Query 040150
Match_columns 85
No_of_seqs 83 out of 85
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 08:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040150.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040150hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d4ua2 g.39.1.5 (A:1-36) DNA 36.7 5.9 0.00043 20.1 0.9 12 1-13 16-27 (36)
2 d1rh6a_ a.6.1.7 (A:) Excisiona 6.0 1.3E+02 0.0091 15.9 1.6 14 16-29 15-28 (55)
3 d1fafa_ a.2.3.1 (A:) Large T a 5.3 57 0.0042 18.0 -0.3 27 9-37 17-45 (79)
4 d2nr5a1 a.25.6.1 (A:1-64) Hypo 5.3 1.1E+02 0.0079 16.4 1.0 11 72-82 47-57 (64)
5 d2jn6a1 a.4.1.19 (A:1-89) Unch 5.0 2E+02 0.015 15.2 2.1 14 17-30 35-48 (89)
6 d2ckca1 d.76.2.1 (A:2563-2622) 4.8 89 0.0065 16.8 0.4 9 75-83 26-34 (60)
7 d2ckaa1 d.76.2.1 (A:2028-2085) 3.6 1.3E+02 0.0092 16.0 0.4 9 75-83 28-36 (58)
8 d1ds6b_ b.1.18.8 (B:) Rho GDP- 3.5 2.1E+02 0.016 18.1 1.5 13 17-29 19-31 (179)
9 d1fs1a1 a.158.1.1 (A:109-149) 3.5 2.1E+02 0.015 13.0 1.1 8 22-29 28-35 (41)
10 d2p12a1 b.175.1.1 (A:8-172) Hy 3.3 3.1E+02 0.022 17.1 2.1 23 61-83 133-156 (165)
No 1
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.70 E-value=5.9 Score=20.08 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.7
Q ss_pred CcccccccCCCCC
Q 040150 1 MENYLNENFGSVK 13 (85)
Q Consensus 1 ~~~~~~~~F~~i~ 13 (85)
|+|||+.+|+ .+
T Consensus 16 ~DSYL~~~Fd-~~ 27 (36)
T d1d4ua2 16 MDSYLMDHFD-LP 27 (36)
T ss_dssp SCSSSTTTTS-CC
T ss_pred HHHHHHHcCC-ch
Confidence 6789999998 54
No 2
>d1rh6a_ a.6.1.7 (A:) Excisionase Xis {Bacteriophage lambda [TaxId: 10710]}
Probab=6.03 E-value=1.3e+02 Score=15.92 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=12.2
Q ss_pred CCcHHHHHHHHHHh
Q 040150 16 NSSEEALQRWRRLY 29 (85)
Q Consensus 16 ~~s~ealrRWR~A~ 29 (85)
.||..+|++|-++.
T Consensus 15 pPs~~TL~~~ak~g 28 (55)
T d1rh6a_ 15 PRSLETVRRWVRES 28 (55)
T ss_dssp CCCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcC
Confidence 47889999999987
No 3
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=5.32 E-value=57 Score=17.98 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=16.0
Q ss_pred CCCCCCCC-CcH-HHHHHHHHHhchhcccCC
Q 040150 9 FGSVKPKN-SSE-EALQRWRRLYGIVKNPKR 37 (85)
Q Consensus 9 F~~i~~k~-~s~-ealrRWR~A~~lviN~~R 37 (85)
++ |++.. ++. +-.+.+|+.+ +--.|-+
T Consensus 17 Lg-l~~~~~~~~~~IkkaYr~l~-~~~HPDk 45 (79)
T d1fafa_ 17 LK-LPRQLWGDFGRMQQAYKQQS-LLLHPDK 45 (79)
T ss_dssp HT-CCSSSTTCHHHHHHHHHHHH-HHSSGGG
T ss_pred hC-CCCCCCCCHHHHHHHHHHHH-HHhCccc
Confidence 44 66543 243 4556688888 6666654
No 4
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=5.30 E-value=1.1e+02 Score=16.39 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=8.1
Q ss_pred HHHhhhhhhhh
Q 040150 72 FLITSTLTDWL 82 (85)
Q Consensus 72 ~~~~~~~~~~~ 82 (85)
..+.+.|.|||
T Consensus 47 tnrikeledwl 57 (64)
T d2nr5a1 47 TNRIKELEDWL 57 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45667888887
No 5
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=4.97 E-value=2e+02 Score=15.21 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=10.9
Q ss_pred CcHHHHHHHHHHhc
Q 040150 17 SSEEALQRWRRLYG 30 (85)
Q Consensus 17 ~s~ealrRWR~A~~ 30 (85)
.+..++.+|.+.++
T Consensus 35 Is~~tl~~W~k~~~ 48 (89)
T d2jn6a1 35 INRVTLKNWIIKYG 48 (89)
T ss_dssp SCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 45678999999873
No 6
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.81 E-value=89 Score=16.75 Aligned_cols=9 Identities=44% Similarity=1.062 Sum_probs=6.1
Q ss_pred hhhhhhhhc
Q 040150 75 TSTLTDWLK 83 (85)
Q Consensus 75 ~~~~~~~~~ 83 (85)
.++|.+||+
T Consensus 26 ~~~L~~WL~ 34 (60)
T d2ckca1 26 NKDLVEWLK 34 (60)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 457777775
No 7
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.61 E-value=1.3e+02 Score=15.98 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=5.5
Q ss_pred hhhhhhhhc
Q 040150 75 TSTLTDWLK 83 (85)
Q Consensus 75 ~~~~~~~~~ 83 (85)
.++|.+||+
T Consensus 28 ~~~L~~WL~ 36 (58)
T d2ckaa1 28 RAELEMWLQ 36 (58)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 356667764
No 8
>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.51 E-value=2.1e+02 Score=18.13 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=10.3
Q ss_pred CcHHHHHHHHHHh
Q 040150 17 SSEEALQRWRRLY 29 (85)
Q Consensus 17 ~s~ealrRWR~A~ 29 (85)
...|+|+||..+-
T Consensus 19 ~~DESL~kwKe~L 31 (179)
T d1ds6b_ 19 KDDESLIKYKKTL 31 (179)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cChhHHHHHHHHh
Confidence 3458999999985
No 9
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.47 E-value=2.1e+02 Score=13.04 Aligned_cols=8 Identities=50% Similarity=0.982 Sum_probs=5.9
Q ss_pred HHHHHHHh
Q 040150 22 LQRWRRLY 29 (85)
Q Consensus 22 lrRWR~A~ 29 (85)
=++|++++
T Consensus 28 cr~w~~l~ 35 (41)
T d1fs1a1 28 CKRWYRLA 35 (41)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHh
Confidence 46788876
No 10
>d2p12a1 b.175.1.1 (A:8-172) Hypothetical protein RHA1_ro00977 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=3.25 E-value=3.1e+02 Score=17.15 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.6
Q ss_pred hhhhhhHHHHHHHHhh-hhhhhhc
Q 040150 61 SFLLKGSLNLKFLITS-TLTDWLK 83 (85)
Q Consensus 61 kir~~~~v~~a~~~~~-~~~~~~~ 83 (85)
.++++..++.++-++. |+..||.
T Consensus 133 Al~ta~~~ve~i~r~g~d~~~WLa 156 (165)
T d2p12a1 133 AILTATTAIDGIAAHGHDLGRWLA 156 (165)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5677788888888888 8999984
Done!