Query 040151
Match_columns 251
No_of_seqs 113 out of 706
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 1.7E-42 3.6E-47 321.1 21.5 225 7-250 338-570 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 8.1E-32 1.8E-36 258.3 18.0 224 6-250 308-553 (564)
3 KOG1299 Vacuolar sorting prote 100.0 1.3E-30 2.9E-35 235.5 18.3 195 11-250 327-534 (549)
4 COG5158 SEC1 Proteins involved 99.9 4.6E-26 9.9E-31 214.9 18.1 215 6-250 330-563 (582)
5 KOG1302 Vacuolar sorting prote 99.9 4.8E-24 1E-28 199.1 19.4 220 7-250 346-588 (600)
6 KOG1301 Vesicle trafficking pr 99.9 3.3E-24 7.2E-29 196.4 15.5 213 6-250 369-600 (621)
7 PF14771 DUF4476: Domain of un 51.2 79 0.0017 22.8 6.5 59 46-107 8-66 (95)
8 PF12327 FtsZ_C: FtsZ family, 51.0 31 0.00067 25.2 4.2 37 213-249 35-76 (95)
9 PF09331 DUF1985: Domain of un 41.6 30 0.00065 27.3 3.1 55 48-109 71-125 (142)
10 PF11691 DUF3288: Protein of u 40.9 1.4E+02 0.0031 21.8 6.5 53 49-104 12-69 (90)
11 PF02401 LYTB: LytB protein; 40.4 47 0.001 29.5 4.4 29 218-246 212-240 (281)
12 KOG2884 26S proteasome regulat 40.1 45 0.00098 28.6 4.0 37 201-240 96-132 (259)
13 PF01344 Kelch_1: Kelch motif; 38.4 12 0.00026 22.9 0.3 10 218-227 13-22 (47)
14 smart00612 Kelch Kelch domain. 33.7 25 0.00054 20.9 1.2 9 219-227 2-10 (47)
15 PRK05581 ribulose-phosphate 3- 33.3 63 0.0014 26.8 4.0 29 217-249 171-199 (220)
16 PF10087 DUF2325: Uncharacteri 33.0 1.3E+02 0.0029 21.6 5.2 36 213-248 47-82 (97)
17 TIGR00216 ispH_lytB (E)-4-hydr 31.0 59 0.0013 28.9 3.5 32 215-246 208-239 (280)
18 PF11569 Homez: Homeodomain le 26.3 1.4E+02 0.003 19.9 3.8 36 67-103 10-45 (56)
19 PF08328 ASL_C: Adenylosuccina 26.0 2.2E+02 0.0048 21.8 5.4 52 51-107 59-110 (115)
20 COG0371 GldA Glycerol dehydrog 25.6 89 0.0019 28.9 3.8 32 216-247 59-90 (360)
21 COG0513 SrmB Superfamily II DN 24.8 91 0.002 30.0 3.9 31 215-249 128-158 (513)
22 PLN02334 ribulose-phosphate 3- 24.4 88 0.0019 26.5 3.4 29 217-249 175-203 (229)
23 KOG2499 Beta-N-acetylhexosamin 24.4 2.1E+02 0.0045 27.6 6.0 35 137-171 188-233 (542)
24 PRK00117 recX recombination re 24.0 2.6E+02 0.0057 22.0 5.9 50 60-110 6-56 (157)
25 PRK12360 4-hydroxy-3-methylbut 23.1 79 0.0017 28.1 2.9 31 215-245 209-239 (281)
26 PRK08883 ribulose-phosphate 3- 23.1 1.2E+02 0.0026 25.8 4.0 32 214-249 165-196 (220)
27 cd00564 TMP_TenI Thiamine mono 23.0 1.1E+02 0.0024 24.4 3.6 30 216-249 150-179 (196)
28 cd01481 vWA_collagen_alpha3-VI 22.1 1.9E+02 0.0041 23.1 4.8 36 213-248 105-140 (165)
29 PRK14137 recX recombination re 22.0 2.6E+02 0.0056 23.4 5.6 49 63-112 38-87 (195)
30 PRK14136 recX recombination re 21.8 2.7E+02 0.0058 25.2 5.9 50 62-112 159-209 (309)
31 PRK10039 hypothetical protein; 21.5 1.3E+02 0.0029 23.4 3.5 26 223-248 81-110 (127)
32 PRK01045 ispH 4-hydroxy-3-meth 20.7 1.1E+02 0.0023 27.6 3.2 32 215-246 210-241 (298)
33 PF11144 DUF2920: Protein of u 20.5 65 0.0014 30.2 1.9 25 201-225 20-44 (403)
34 PF00739 X: Trans-activation p 20.4 34 0.00073 26.7 0.0 15 213-227 125-139 (142)
35 PRK00103 rRNA large subunit me 20.4 58 0.0013 26.3 1.4 12 214-225 96-107 (157)
36 PF01408 GFO_IDH_MocA: Oxidore 20.4 1.2E+02 0.0026 22.1 3.1 34 214-247 86-119 (120)
37 PRK00043 thiE thiamine-phospha 20.3 1.2E+02 0.0025 24.9 3.3 30 216-249 160-189 (212)
38 PF03575 Peptidase_S51: Peptid 20.0 61 0.0013 25.6 1.4 18 218-235 38-55 (154)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-42 Score=321.06 Aligned_cols=225 Identities=26% Similarity=0.405 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-CcchHH-------HHHHhhhCCCCChhhHHHHHHHHHHhCC
Q 040151 7 LHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAEFKD-------VIKVLTAKEDVTLDNKLRLLMIAASIYP 78 (251)
Q Consensus 7 ~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~~k~-------li~~L~~~~~~~~~dkLRLllLy~l~~~ 78 (251)
+++..++.|++||++|++.++. +|.+++++|||||+| |+++++ ++..+. +++++..||+|++++|.+. .
T Consensus 338 k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~ 414 (593)
T KOG1300|consen 338 KELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-R 414 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-c
Confidence 5677899999999999999998 999999999999999 876543 334444 7899999999999999995 6
Q ss_pred CCCChHHHHHHHHHcCCChhHHHHHHHHHHhcCCccccccccCCCcccccCCCCCCccccccCccchHHHHHHHHhcCCC
Q 040151 79 EKFEGEKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSRRGKKRTARKDRSGGEEICKYPRSLKIWHKLVEKLGKNEL 158 (251)
Q Consensus 79 ~~~~~~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~k~~~~~~k~~~~~~~~y~~sr~~P~l~~ile~l~~~~l 158 (251)
+|..+.++.+|+++.+++.++++++.|+..+|.+..++....|...+.++++. .+.+|.+|||+|.|++|+|++++++|
T Consensus 415 ~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~k~~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~L 493 (593)
T KOG1300|consen 415 KGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTKDSFLLKFDPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRL 493 (593)
T ss_pred CCccHHHHHHHhcccCCCchHHHHHhhHHHhCCccccCcccccCCCCcccccc-ccceeeeeeeehHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999887655433344445577776 89999999999999999999999999
Q ss_pred CCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCHHHHHHHHHHHh
Q 040151 159 SKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATSSELRICYKLTT 238 (251)
Q Consensus 159 ~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~r~~~els~ 238 (251)
++++|||+..++.... .....|++++.|.+.+... ...+.+||+|||||||+||+|+|++||+++
T Consensus 494 d~~~fp~~~~~s~~~~-~~~~~Sar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~ 558 (593)
T KOG1300|consen 494 DKKHFPYLNDTSETSS-GSAATSARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSE 558 (593)
T ss_pred ChhhCccccCCccccc-cCccccccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHH
Confidence 9999999987763221 1122233445666655531 123579999999999999999999999999
Q ss_pred hcCCeEEEccCC
Q 040151 239 ELNGEVVLGSSK 250 (251)
Q Consensus 239 ~~~~~IiiGsT~ 250 (251)
+++++||||||+
T Consensus 559 ~~~~EViiGS~~ 570 (593)
T KOG1300|consen 559 KLNREVIIGSDH 570 (593)
T ss_pred hhCceEEECCcc
Confidence 999999999997
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=99.98 E-value=8.1e-32 Score=258.35 Aligned_cols=224 Identities=22% Similarity=0.338 Sum_probs=160.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-Ccc---hHHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCC
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAE---FKDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKF 81 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~---~k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~ 81 (251)
.+++..+++|++|+++|++.+++++|.+++++||+|++| +.+ ...+.++|. +...+.+|||||+|||+++. |+
T Consensus 308 ~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~d~LRLl~L~sl~~--g~ 384 (564)
T PF00995_consen 308 QEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIEDKLRLLCLYSLTN--GI 384 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHHHHHHHHHHHHHHh--cC
Confidence 466788999999999999999999999999999999999 333 234888885 78899999999999999972 44
Q ss_pred Ch---HHHHHHHHHcCCChhHHHHHHHHHHhcCCcccc----ccc-cCCCccc---c---cCCCCCCccccccCccchHH
Q 040151 82 EG---EKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKK----KSR-RGKKRTA---R---KDRSGGEEICKYPRSLKIWH 147 (251)
Q Consensus 82 ~~---~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~----~~~-~k~~~~~---~---k~~~~~~~~y~~sr~~P~l~ 147 (251)
+. +++++++..++++.+++.++.+|..+|....+. ... .+..+.. . ....+.+..|.++||+|+++
T Consensus 385 ~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~y~Pli~ 464 (564)
T PF00995_consen 385 KGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNSSNFQSIRKKLNLISKFNDKNDKNNPKDISYVYSGYAPLIV 464 (564)
T ss_dssp TCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTTS--CTTC-TT---HHTTCCCSSSSCSCCCSTTCT---HHH
T ss_pred CcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCccchhhhcccccccccccccccccccccccchhcccccHHH
Confidence 44 456778888888889999999999998776541 000 1111111 1 11135688999999999999
Q ss_pred HHHHHHhcCCCC-CCCCCcccCcCCCCc-cccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCC
Q 040151 148 KLVEKLGKNELS-KDDYPSHFAVINEAP-VAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGA 225 (251)
Q Consensus 148 ~ile~l~~~~l~-~~~fp~~~~~~~~~~-~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGv 225 (251)
++|+.+++++++ ++.||++++...... ...+++..+ +.|.... ....+++++||||||||
T Consensus 465 rlve~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------------~~~~~~~~viVf~vGGv 526 (564)
T PF00995_consen 465 RLVEDLIKGKLDKEEEFPYLDPKPKNLNGSSFSLRSSK-PSRSKTQ-----------------PSNKPRKRVIVFFVGGV 526 (564)
T ss_dssp HHHHHHHTTHSHHTTTSEBSSTCC-----SSSSSS-------------------------------S-SSEEEEEEETEB
T ss_pred HHHHHHhhccCCcccccccccccccccCCCCccccccc-ccccccc-----------------cccCCCCEEEEEEEcCC
Confidence 999999999997 999999987752211 112222211 1111000 01246899999999999
Q ss_pred CHHHHHHHHHHHhhcC--CeEEEccCC
Q 040151 226 TSSELRICYKLTTELN--GEVVLGSSK 250 (251)
Q Consensus 226 Ty~E~r~~~els~~~~--~~IiiGsT~ 250 (251)
||+|++++++++++.+ ++|+||||+
T Consensus 527 Ty~Ei~~l~~l~~~~~~~~~iiigsT~ 553 (564)
T PF00995_consen 527 TYSEIRALRELSKKLGPGKEIIIGSTS 553 (564)
T ss_dssp EHHHHHHHHHHHTTSSSSSEEEEEESS
T ss_pred cHHHHHHHHHHHHhhCCCcEEEEEeCC
Confidence 9999999999999988 999999996
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-30 Score=235.46 Aligned_cols=195 Identities=25% Similarity=0.333 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccCCcc---hHHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCCChHHHH
Q 040151 11 FVAHDSALHQKINRIIRETGLRELGQLEQDLVFCDAE---FKDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKFEGEKGL 87 (251)
Q Consensus 11 ~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~gd~~---~k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~~~~~~~ 87 (251)
+|++|+.+.+++++.++.++|.+++|+||+++|.+++ ..++.++|. +.+++..|++||++||+|+| +..+..++.
T Consensus 327 ~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~-e~~~~~~~~ 404 (549)
T KOG1299|consen 327 NVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQ-NEKVSEIDRLRLVALYALRY-ERHPPNELR 404 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHc-CCcccHHHHHHHHHHHHHHh-ccCChHHHH
Confidence 5899999999999999999999999999999997443 457888886 89999999999999999999 677777776
Q ss_pred HH---HHHcCCChhHHHHHHHHHHhcCCccccccccCCC------cccccCCCCCCccccccCccchHHHHHHHHhcCCC
Q 040151 88 NL---MKLAKLTADDMTAVNNMRLFGGSSEKKKSRRGKK------RTARKDRSGGEEICKYPRSLKIWHKLVEKLGKNEL 158 (251)
Q Consensus 88 ~l---l~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~k~~------~~~~k~~~~~~~~y~~sr~~P~l~~ile~l~~~~l 158 (251)
+| |...|- ..-.++.-|.++++...+.+...... +...|.-++.++.|. ||.|+|+++++++.+|+|
T Consensus 405 ~L~~~l~~~~~--~~~~~v~~ll~~~G~~~R~~dlf~~~~~v~i~R~~~kglkgvENVyt--QH~P~lk~~l~~~~rgRl 480 (549)
T KOG1299|consen 405 QLPQILREQGP--KKPELVPFLLKYAGLHVRQGDLFGPNDLVPIARRFIKGLKGVENVYT--QHQPLLKSTLEDLFRGRL 480 (549)
T ss_pred HHHHHHHhcCC--CcchhHHHHHHhcCcccccccccCcchhHHHHHHHhhccCcchhhhh--ccCHHHHHHHHHHHhccc
Confidence 65 444443 24577888888887765554221111 111222245677777 999999999999999999
Q ss_pred CCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCHHHHHHHHHHHh
Q 040151 159 SKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATSSELRICYKLTT 238 (251)
Q Consensus 159 ~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~r~~~els~ 238 (251)
++-.||++..... +.+++.||||||||+||+|+|.++++..
T Consensus 481 ~~~~~p~l~~~~s---------------------------------------~~~pq~IIVfivGGaTYEEa~~V~~~N~ 521 (549)
T KOG1299|consen 481 KEIDYPFLGSQTS---------------------------------------RDRPQDIIVFIVGGATYEEARVVHELNA 521 (549)
T ss_pred ccCCCcccccccc---------------------------------------cCCCceEEEEEECCccHHHHHHHHHHhc
Confidence 9888999974321 1379999999999999999999999997
Q ss_pred h-cCCeEEEccCC
Q 040151 239 E-LNGEVVLGSSK 250 (251)
Q Consensus 239 ~-~~~~IiiGsT~ 250 (251)
+ .|++|++|||+
T Consensus 522 tn~g~rvvLgGtt 534 (549)
T KOG1299|consen 522 TNPGVRVVLGGTT 534 (549)
T ss_pred CCCceEEEEcceE
Confidence 5 48999999985
No 4
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=99.94 E-value=4.6e-26 Score=214.86 Aligned_cols=215 Identities=22% Similarity=0.306 Sum_probs=158.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccCCc---chHHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCC-
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFCDA---EFKDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKF- 81 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~gd~---~~k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~- 81 (251)
+.+++.|.+|++|+++|++++++++|++++++||++.++.. +..|++..+. .... ..|||||+|||+|+. +++
T Consensus 330 ~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~~~~i~Dli~~l~-~~~~-E~~klRllilysL~~-~~~~ 406 (582)
T COG5158 330 QKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGNDVKSDISDLIELLE-SGVE-EDDKLRLLILYSLTK-DGLI 406 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHh-cCch-HHHHHHHHHHHHHhc-Ccch
Confidence 46788999999999999999999999999999999999842 2567888775 3333 337999999999975 563
Q ss_pred ChHHHHHHHHHcCCChhHHHHHHHHHHhcCCccccccc----cCCC---------cccccC-CCCCCccccccCccchHH
Q 040151 82 EGEKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSR----RGKK---------RTARKD-RSGGEEICKYPRSLKIWH 147 (251)
Q Consensus 82 ~~~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~----~k~~---------~~~~k~-~~~~~~~y~~sr~~P~l~ 147 (251)
...+..+++...|++.++...++++..+|....+.... .+.+ .+..+. ....+..+++++|.|..+
T Consensus 407 ~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~~n~y~~s~~~~~~~~~~~v~~~~iP~~k 486 (582)
T COG5158 407 KDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQWFNTYSLSREHQGVPDLENVYSGLIPLKK 486 (582)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCcccccccccccCCCchHHHHHHhhcchhc
Confidence 44567788899999999999999999887664333211 0110 011111 123456667889999999
Q ss_pred HHHHHHhcCCCCCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCH
Q 040151 148 KLVEKLGKNELSKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATS 227 (251)
Q Consensus 148 ~ile~l~~~~l~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy 227 (251)
++...++.+++.+..++.... |.|..+ +.| +.+.. ...++++++|||+||+||
T Consensus 487 ~~~~~~~~~~~~~~~~s~~~~---------s~~~~~-~k~-~~~~~----------------~~~~~~~~~VfviGG~ty 539 (582)
T COG5158 487 DIPIDLLVRRLFEPLKSSQQQ---------SLRLSR-PKG-RSRSN----------------KKIPQQRILVFVIGGVTY 539 (582)
T ss_pred ccchhhhhhhhcccccchhcc---------ceeecc-ccc-ccccc----------------cccccceEEEEEECCeeh
Confidence 999999999887766665541 222222 122 11111 013799999999999999
Q ss_pred HHHHHHHHHHhhcC-CeEEEccCC
Q 040151 228 SELRICYKLTTELN-GEVVLGSSK 250 (251)
Q Consensus 228 ~E~r~~~els~~~~-~~IiiGsT~ 250 (251)
+|+|++|+++.+.+ ++|++|||.
T Consensus 540 ~E~~~~~e~~~~~~~~~ii~Gst~ 563 (582)
T COG5158 540 EELRVLYELNESQNSVRIIYGSTE 563 (582)
T ss_pred HHHHHHHHHHhhcCCeeEEEcCCc
Confidence 99999999999887 999999996
No 5
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.8e-24 Score=199.06 Aligned_cols=220 Identities=17% Similarity=0.210 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-Ccc-hHHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCCChH
Q 040151 7 LHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAE-FKDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKFEGE 84 (251)
Q Consensus 7 ~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~-~k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~~~~ 84 (251)
.+|+.+..|+++|+.+++++...++.+...+||++..| |.+ .-++|+.++ ....+....|||+||.+++. +|+.++
T Consensus 346 ~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~~~~IeElI-~~~~~~~~vLRLicL~Slt~-~Gl~~k 423 (600)
T KOG1302|consen 346 QRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKDFDYIEELI-YQEVPLNNVLRLICLLSLTC-NGLKPK 423 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccchHHHHHHH-hhcccHHHHHHHHHHHHHHh-cCCCHH
Confidence 46777999999999999999999999999999999888 533 356777766 66899999999999999987 899998
Q ss_pred HH----HHHHHHcCCChhHHHHHHHHHHhcCCcccccccc---C----------CCccccc----CCCCCCccccccCcc
Q 040151 85 KG----LNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSRR---G----------KKRTARK----DRSGGEEICKYPRSL 143 (251)
Q Consensus 85 ~~----~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~---k----------~~~~~~k----~~~~~~~~y~~sr~~ 143 (251)
++ +.+++.+|. +++-.++||++.|+-..+..+.. + +..+..+ ...++|.+|+||+|.
T Consensus 424 ~l~~~rr~~lqsYG~--ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~ 501 (600)
T KOG1302|consen 424 DLDHYRREYLQSYGY--EHLLTLQNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTLPLVDEENDESNPSDIAYVYSGYA 501 (600)
T ss_pred HHHHHHHHHHHhhhH--HHHHHHHHHHHcCCcccccCCCcchhhHHHHHHHHHHhcCCCcCCcccccCcccchhhhcccc
Confidence 86 467999998 89999999999997755443220 0 0011111 124789999999999
Q ss_pred chHHHHHHHHhcCCCCCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEc
Q 040151 144 KIWHKLVEKLGKNELSKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVG 223 (251)
Q Consensus 144 P~l~~ile~l~~~~l~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvG 223 (251)
|++.+|++.+++.......|.-+...+.. . . ....|....- ..++..+ ...+.++|||+|
T Consensus 502 PLs~rlve~~l~~~~w~~~~~~i~~l~g~----~-~---e~~~~~~~~~---------~~~~~~~---g~~R~~lVff~G 561 (600)
T KOG1302|consen 502 PLSCRLVEDLLKRRGWQELYSKIRNLPGP----H-F---EEVTWTPSDI---------ASKNNSP---GALRVTLVFFLG 561 (600)
T ss_pred cHHHHHHHHHhcccchhhhHHHHccCCCC----c-h---hhcccChhhh---------cccccCC---CCcceEEEEEEC
Confidence 99999999999985444444333322110 0 0 0001110000 0000000 147899999999
Q ss_pred CCCHHHHHHHHHHHhhcCCeEEEccCC
Q 040151 224 GATSSELRICYKLTTELNGEVVLGSSK 250 (251)
Q Consensus 224 GvTy~E~r~~~els~~~~~~IiiGsT~ 250 (251)
|+||+|+++++++++..|.+++|.+|+
T Consensus 562 G~T~~EIAalr~l~~~~~~~f~i~Tt~ 588 (600)
T KOG1302|consen 562 GCTYAEIAALRFLAKLEGYRFLIATTG 588 (600)
T ss_pred CccHHHHHHHHHHHhhcCceEEEEecc
Confidence 999999999999999999999999986
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.3e-24 Score=196.42 Aligned_cols=213 Identities=18% Similarity=0.190 Sum_probs=147.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccCCcchHHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCCChHH
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFCDAEFKDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKFEGEK 85 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~gd~~~k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~~~~~ 85 (251)
+++|+.+++|++||+++.+++++|.|+.+.++|++++++.- -+.+++.+.+....+++||||+++||.++. +-..+++
T Consensus 369 ~ekK~~ID~HtnIatalL~~IkeR~lD~ff~~E~~~~~~~l-~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~-et~~~s~ 446 (621)
T KOG1301|consen 369 TEKKRLIDLHTNIATALLEQIKERKLDDFFEVEKKIMSTTL-DRSLLDILEDGEAGTPEDKLRLFIIYYLST-ETVPQSD 446 (621)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhcccccccc-cHHHHHHHhcccCCChHHHHHHHHHHHHhh-ccccHHH
Confidence 68999999999999999999999999999999999987421 246677776446789999999999999976 5555766
Q ss_pred HH---HHHHHcCCChhHHHHHHHHHHhcCCcc--ccccccCCCcc-----cccC-C----CCCCccccccCccchHHHHH
Q 040151 86 GL---NLMKLAKLTADDMTAVNNMRLFGGSSE--KKKSRRGKKRT-----ARKD-R----SGGEEICKYPRSLKIWHKLV 150 (251)
Q Consensus 86 ~~---~ll~~~gl~~~~~~~l~~l~~lg~~~~--~~~~~~k~~~~-----~~k~-~----~~~~~~y~~sr~~P~l~~il 150 (251)
++ ..++.+|++.+.++.+++|+.+..... ...+....+.. ...+ . .+.-+-..--+..| +.+|+
T Consensus 447 le~~e~al~e~~~d~~Al~yvkr~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~~q~lP-vT~iv 525 (621)
T KOG1301|consen 447 LEAVENALTEAGCDLNALKYVKRLKEITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPKKQNLP-VTRIV 525 (621)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccccccCCcccHHHHHHHHhhccHHHHHhhHHhcCcccccCc-HHHHH
Confidence 65 458889998888888888776532211 11111111100 0000 0 00000011113344 68999
Q ss_pred HHHhcCCC--CCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCHH
Q 040151 151 EKLGKNEL--SKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATSS 228 (251)
Q Consensus 151 e~l~~~~l--~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~ 228 (251)
|.++.++- ..++|.|++|+.... +.+.+. .+ ..+.++.|||||||.+|-
T Consensus 526 eal~~~~sn~etddYl~~DPk~~k~--~~~~~~--------~~-------------------r~~f~eaIVFvVGGGNYi 576 (621)
T KOG1301|consen 526 EALMDPKSNPETDDYLYFDPKLSKG--GSSSLP--------IK-------------------RQPFQEAIVFVVGGGNYI 576 (621)
T ss_pred HHhhCCCCCccccceEeeccccccC--CCcccc--------cc-------------------ccchhheEEEEEcCcCee
Confidence 99998875 357799999885431 111110 01 126999999999999999
Q ss_pred HHHHHHHHHhhc--CCeEEEccCC
Q 040151 229 ELRICYKLTTEL--NGEVVLGSSK 250 (251)
Q Consensus 229 E~r~~~els~~~--~~~IiiGsT~ 250 (251)
|+.++.+|+++. .++||||+|.
T Consensus 577 EYqnL~d~~krq~~~krIiYGsTe 600 (621)
T KOG1301|consen 577 EYQNLVDLAKRQQTVKRIIYGSTE 600 (621)
T ss_pred ehhhHHHHHHhhcccceeEecchh
Confidence 999999999864 3899999995
No 7
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=51.24 E-value=79 Score=22.80 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=44.1
Q ss_pred cchHHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHHHHHHHHH
Q 040151 46 AEFKDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR 107 (251)
Q Consensus 46 ~~~k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~ 107 (251)
.+++++++.|. . ..-..||++++-.++-+. .-++.+++.+++.....+.+.+++++-+-
T Consensus 8 ~~f~~~~~~lk-~-~~fd~dkl~~l~~~~~~~-~~~T~~Qv~~il~~f~fd~~kl~~lk~l~ 66 (95)
T PF14771_consen 8 NDFEQFLEQLK-K-ESFDSDKLKVLEAAAKTN-NCFTCAQVKQILSLFSFDNDKLKALKLLY 66 (95)
T ss_pred HHHHHHHHHHH-c-CCCcHHHHHHHHHHHhcC-CceeHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34678888885 3 456789999988887643 23888999999999998887777766544
No 8
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=51.01 E-value=31 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCceEEEEEEcC--CCHHHHHHHHHHHh-hc--CCeEEEccC
Q 040151 213 IGQCIFEFVVGG--ATSSELRICYKLTT-EL--NGEVVLGSS 249 (251)
Q Consensus 213 ~~~~iIVFvvGG--vTy~E~r~~~els~-~~--~~~IiiGsT 249 (251)
..+.++|.|.|| +|+.|+..+-+.-+ .. +.+|++|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 478999999997 77999887765443 33 578998864
No 9
>PF09331 DUF1985: Domain of unknown function (DUF1985); InterPro: IPR015410 This domain is functionally uncharacterised; it is found in a set of Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.
Probab=41.57 E-value=30 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=34.8
Q ss_pred hHHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHHHHHHHHHHh
Q 040151 48 FKDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLF 109 (251)
Q Consensus 48 ~k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~~l 109 (251)
..+++..|......+.++|+||++||.+. +-+-.. -+...++.+.++.+.++..+
T Consensus 71 v~dv~~~L~~~~~~~~~~Rlrla~L~~v~--gvl~~~-----~~~~~i~~~~~~~v~Dl~~f 125 (142)
T PF09331_consen 71 VEDVIAKLKKMKKWDSEDRLRLALLLFVD--GVLIAT-----SKTTKIPKEHLKMVDDLEKF 125 (142)
T ss_pred HHHHHHHHhhcccCChhhHHHHHHHHhhh--eeeecc-----CCCCCCCHHHHHHHhhHHHH
Confidence 34677777644568899999999999883 222111 01223666677777666654
No 10
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=40.91 E-value=1.4e+02 Score=21.80 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHHHhhhCCCCChhhHHHHHHHHHHhCCCCCCh-----HHHHHHHHHcCCChhHHHHHH
Q 040151 49 KDVIKVLTAKEDVTLDNKLRLLMIAASIYPEKFEG-----EKGLNLMKLAKLTADDMTAVN 104 (251)
Q Consensus 49 k~li~~L~~~~~~~~~dkLRLllLy~l~~~~~~~~-----~~~~~ll~~~gl~~~~~~~l~ 104 (251)
+++++.|. ....+..+..-|.-|.+ +| .|++. .|+.++|+.=|++.+++..-.
T Consensus 12 R~~vd~Ll-~~~p~d~~L~eLARL~i-RY-~gFPGA~diq~DL~kiL~~W~lteeeLf~kT 69 (90)
T PF11691_consen 12 REIVDRLL-AGEPTDYNLAELARLRI-RY-QGFPGARDIQKDLDKILQKWGLTEEELFEKT 69 (90)
T ss_pred HHHHHHHH-cCCCCchhHHHHHHHHH-Hh-cCCCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 46777776 33356666666666655 57 56553 567789999999877665433
No 11
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=40.37 E-value=47 Score=29.54 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=23.6
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhcCCeEEE
Q 040151 218 FEFVVGGATSSELRICYKLTTELNGEVVL 246 (251)
Q Consensus 218 IVFvvGGvTy~E~r~~~els~~~~~~Iii 246 (251)
+++||||-+-+-.+.|++++++.+.+.+.
T Consensus 212 ~miVIGg~~SsNT~kL~eia~~~~~~t~~ 240 (281)
T PF02401_consen 212 AMIVIGGKNSSNTRKLAEIAKEHGKPTYH 240 (281)
T ss_dssp EEEEES-TT-HHHHHHHHHHHHCTTCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHHhCCCEEE
Confidence 88999999999999999999988765554
No 12
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=40.08 E-value=45 Score=28.63 Aligned_cols=37 Identities=32% Similarity=0.229 Sum_probs=27.0
Q ss_pred hhhhhhcccccCCCceEEEEEEcCCCHHHHHHHHHHHhhc
Q 040151 201 SVLKHALSGFEKIGQCIFEFVVGGATSSELRICYKLTTEL 240 (251)
Q Consensus 201 ~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~r~~~els~~~ 240 (251)
-+|+++.++ ..++||||||--=+.++|. .+..+++++
T Consensus 96 lalkhRqnk--~~~~riVvFvGSpi~e~ek-eLv~~akrl 132 (259)
T KOG2884|consen 96 LALKHRQNK--NQKQRIVVFVGSPIEESEK-ELVKLAKRL 132 (259)
T ss_pred HHHHhhcCC--CcceEEEEEecCcchhhHH-HHHHHHHHH
Confidence 355665552 3479999999999999998 666677664
No 13
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=38.41 E-value=12 Score=22.85 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=7.9
Q ss_pred EEEEEcCCCH
Q 040151 218 FEFVVGGATS 227 (251)
Q Consensus 218 IVFvvGGvTy 227 (251)
-|||+||.+-
T Consensus 13 ~iyv~GG~~~ 22 (47)
T PF01344_consen 13 KIYVIGGYDG 22 (47)
T ss_dssp EEEEEEEBES
T ss_pred EEEEEeeecc
Confidence 4899999864
No 14
>smart00612 Kelch Kelch domain.
Probab=33.74 E-value=25 Score=20.87 Aligned_cols=9 Identities=44% Similarity=0.759 Sum_probs=7.4
Q ss_pred EEEEcCCCH
Q 040151 219 EFVVGGATS 227 (251)
Q Consensus 219 VFvvGGvTy 227 (251)
|||+||.+.
T Consensus 2 iyv~GG~~~ 10 (47)
T smart00612 2 IYVVGGFDG 10 (47)
T ss_pred EEEEeCCCC
Confidence 799999863
No 15
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=33.25 E-value=63 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=21.2
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccC
Q 040151 217 IFEFVVGGATSSELRICYKLTTELNGEVVLGSS 249 (251)
Q Consensus 217 iIVFvvGGvTy~E~r~~~els~~~~~~IiiGsT 249 (251)
..|.+.||+|-+.++.+.+ .|.++++.|+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgS 199 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGS 199 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEECh
Confidence 6677899999976655554 5788777665
No 16
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.02 E-value=1.3e+02 Score=21.64 Aligned_cols=36 Identities=3% Similarity=-0.045 Sum_probs=33.0
Q ss_pred CCceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEcc
Q 040151 213 IGQCIFEFVVGGATSSELRICYKLTTELNGEVVLGS 248 (251)
Q Consensus 213 ~~~~iIVFvvGGvTy~E~r~~~els~~~~~~IiiGs 248 (251)
...++||++.+=+++.-+..+.+.+++.++.+++--
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 467999999999999999999999999999988764
No 17
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=31.03 E-value=59 Score=28.91 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=26.2
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEE
Q 040151 215 QCIFEFVVGGATSSELRICYKLTTELNGEVVL 246 (251)
Q Consensus 215 ~~iIVFvvGGvTy~E~r~~~els~~~~~~Iii 246 (251)
+-=+++||||-.-+-.+-|++++++.+.+.+.
T Consensus 208 ~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~ 239 (280)
T TIGR00216 208 EVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYL 239 (280)
T ss_pred hCCEEEEECCCCCchHHHHHHHHHHhCCCEEE
Confidence 34478999999999999999999987754443
No 18
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=26.28 E-value=1.4e+02 Score=19.88 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHHHHH
Q 040151 67 LRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDMTAV 103 (251)
Q Consensus 67 LRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~~~l 103 (251)
++.+-=|...+ ..+.+.|+..|....+++.+++.-.
T Consensus 10 ~~pL~~Yy~~h-~~L~E~DL~~L~~kS~ms~qqVr~W 45 (56)
T PF11569_consen 10 IQPLEDYYLKH-KQLQEEDLDELCDKSRMSYQQVRDW 45 (56)
T ss_dssp -HHHHHHHHHT-----TTHHHHHHHHTT--HHHHHHH
T ss_pred hHHHHHHHHHc-CCccHhhHHHHHHHHCCCHHHHHHH
Confidence 35566677777 6799999999999999988776643
No 19
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=25.99 E-value=2.2e+02 Score=21.81 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=29.3
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHHHHHHHHH
Q 040151 51 VIKVLTAKEDVTLDNKLRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR 107 (251)
Q Consensus 51 li~~L~~~~~~~~~dkLRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~ 107 (251)
+..+|....--.++++|+-+ +-...++.+++.++++...++++..+-+.+|.
T Consensus 59 IQTvmRr~g~~~pYE~LK~l-----TRg~~it~~~l~~fI~~L~ip~~~k~~L~~lt 110 (115)
T PF08328_consen 59 IQTVMRRYGIPNPYEKLKEL-----TRGKKITKEDLREFIESLDIPEEAKARLLALT 110 (115)
T ss_dssp HHHHHHHTT-SSHHHHHHHH-----HTTS---HHHHHHHHHTSSS-HHHHHHHHH--
T ss_pred HHHHHHHcCCCCHHHHHHHH-----HcCCCCCHHHHHHHHHhCCCCHHHHHHHHhcC
Confidence 44444433445688877743 33245777888889998888877766666554
No 20
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=25.57 E-value=89 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEc
Q 040151 216 CIFEFVVGGATSSELRICYKLTTELNGEVVLG 247 (251)
Q Consensus 216 ~iIVFvvGGvTy~E~r~~~els~~~~~~IiiG 247 (251)
...+.++|.+|++|...+...+...+.+++||
T Consensus 59 ~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIG 90 (360)
T COG0371 59 VVHVVFVGEASEEEVERLAAEAGEDGADVVIG 90 (360)
T ss_pred ceeeeecCccCHHHHHHHHHHhcccCCCEEEE
Confidence 67888999999999999988877677788886
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=24.79 E-value=91 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=23.8
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccC
Q 040151 215 QCIFEFVVGGATSSELRICYKLTTELNGEVVLGSS 249 (251)
Q Consensus 215 ~~iIVFvvGGvTy~E~r~~~els~~~~~~IiiGsT 249 (251)
..-++.++||+++..-. ..|.. |.+|+||+.
T Consensus 128 ~~~~~~i~GG~~~~~q~--~~l~~--~~~ivVaTP 158 (513)
T COG0513 128 GLRVAVVYGGVSIRKQI--EALKR--GVDIVVATP 158 (513)
T ss_pred CccEEEEECCCCHHHHH--HHHhc--CCCEEEECc
Confidence 34489999999988755 45544 799999985
No 22
>PLN02334 ribulose-phosphate 3-epimerase
Probab=24.42 E-value=88 Score=26.49 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=20.7
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccC
Q 040151 217 IFEFVVGGATSSELRICYKLTTELNGEVVLGSS 249 (251)
Q Consensus 217 iIVFvvGGvTy~E~r~~~els~~~~~~IiiGsT 249 (251)
+-|+++||+|-+.+..+.+ .|.++++.|+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~----aGad~vvvgs 203 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAE----AGANVIVAGS 203 (229)
T ss_pred CcEEEeCCCCHHHHHHHHH----cCCCEEEECh
Confidence 4699999999887666553 4777666554
No 23
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=24.36 E-value=2.1e+02 Score=27.64 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=25.5
Q ss_pred ccccCc-cch--HHHHHHHHhcCCC--------CCCCCCcccCcCC
Q 040151 137 CKYPRS-LKI--WHKLVEKLGKNEL--------SKDDYPSHFAVIN 171 (251)
Q Consensus 137 y~~sr~-~P~--l~~ile~l~~~~l--------~~~~fp~~~~~~~ 171 (251)
.+.||| .|+ |+++++.+.-+|| |.+.||+..+..|
T Consensus 188 lDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~P 233 (542)
T KOG2499|consen 188 LDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFP 233 (542)
T ss_pred EecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCch
Confidence 355776 554 8899998888887 4678888766654
No 24
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=24.03 E-value=2.6e+02 Score=21.95 Aligned_cols=50 Identities=4% Similarity=0.014 Sum_probs=36.3
Q ss_pred CCChhhHHHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHHH-HHHHHHHhc
Q 040151 60 DVTLDNKLRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDMT-AVNNMRLFG 110 (251)
Q Consensus 60 ~~~~~dkLRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~~-~l~~l~~lg 110 (251)
......+.+-.+++.|++ ...+..++.+-|...|++++.++ +|..|...|
T Consensus 6 ~~~~~~~a~~~al~~L~~-r~~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~ 56 (157)
T PRK00117 6 RRRMYASARARALRLLAR-REHSRAELRRKLAAKGFSEEVIEAVLDRLKEEG 56 (157)
T ss_pred cccHHHHHHHHHHHHHcc-chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 345567778888888877 56777888877788899887764 456666554
No 25
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=23.15 E-value=79 Score=28.13 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.5
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEE
Q 040151 215 QCIFEFVVGGATSSELRICYKLTTELNGEVV 245 (251)
Q Consensus 215 ~~iIVFvvGGvTy~E~r~~~els~~~~~~Ii 245 (251)
+-=+++||||-.-+-.+-|++++++.+.+.+
T Consensus 209 ~vD~miVVGg~~SsNT~rL~eia~~~~~~t~ 239 (281)
T PRK12360 209 EVDVMIVIGGKHSSNTQKLVKICEKNCPNTF 239 (281)
T ss_pred hCCEEEEecCCCCccHHHHHHHHHHHCCCEE
Confidence 3447899999999999999999988765444
No 26
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.12 E-value=1.2e+02 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=22.9
Q ss_pred CceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccC
Q 040151 214 GQCIFEFVVGGATSSELRICYKLTTELNGEVVLGSS 249 (251)
Q Consensus 214 ~~~iIVFvvGGvTy~E~r~~~els~~~~~~IiiGsT 249 (251)
+..+-|.|.||+|-+.++.+.+ .|.++++.|+
T Consensus 165 ~~~~~I~vdGGI~~eni~~l~~----aGAd~vVvGS 196 (220)
T PRK08883 165 GRDIRLEIDGGVKVDNIREIAE----AGADMFVAGS 196 (220)
T ss_pred CCCeeEEEECCCCHHHHHHHHH----cCCCEEEEeH
Confidence 3457788999999766665543 5788777665
No 27
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=22.97 E-value=1.1e+02 Score=24.42 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccC
Q 040151 216 CIFEFVVGGATSSELRICYKLTTELNGEVVLGSS 249 (251)
Q Consensus 216 ~iIVFvvGGvTy~E~r~~~els~~~~~~IiiGsT 249 (251)
.+-|++.||++-..+..+.. .|.+.+..|+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~ 179 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----AGADGVAVIS 179 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----cCCCEEEEeh
Confidence 46689999999765555443 4666655543
No 28
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=22.12 E-value=1.9e+02 Score=23.05 Aligned_cols=36 Identities=6% Similarity=-0.089 Sum_probs=25.1
Q ss_pred CCceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEcc
Q 040151 213 IGQCIFEFVVGGATSSELRICYKLTTELNGEVVLGS 248 (251)
Q Consensus 213 ~~~~iIVFvvGGvTy~E~r~~~els~~~~~~IiiGs 248 (251)
..++++|+|..|-+..+........+..|+.|+--|
T Consensus 105 ~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG 140 (165)
T cd01481 105 GVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIG 140 (165)
T ss_pred CCCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEe
Confidence 357888888999988777655555556777766433
No 29
>PRK14137 recX recombination regulator RecX; Provisional
Probab=21.99 E-value=2.6e+02 Score=23.38 Aligned_cols=49 Identities=6% Similarity=-0.033 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHH-HHHHHHHHhcCC
Q 040151 63 LDNKLRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDM-TAVNNMRLFGGS 112 (251)
Q Consensus 63 ~~dkLRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~-~~l~~l~~lg~~ 112 (251)
...+++-.++++|++ ...+..++.+-|+..|++++.+ .+|..|...|..
T Consensus 38 ~~~~~~~~Al~~Ls~-R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyL 87 (195)
T PRK14137 38 AREALLAYAFRALAA-RAMTAAELRAKLERRSEDEALVTEVLERVQELGYQ 87 (195)
T ss_pred HHHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 346777778888877 5677788887788889988776 557778776643
No 30
>PRK14136 recX recombination regulator RecX; Provisional
Probab=21.82 E-value=2.7e+02 Score=25.18 Aligned_cols=50 Identities=6% Similarity=-0.040 Sum_probs=38.4
Q ss_pred ChhhHHHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHH-HHHHHHHHhcCC
Q 040151 62 TLDNKLRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDM-TAVNNMRLFGGS 112 (251)
Q Consensus 62 ~~~dkLRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~-~~l~~l~~lg~~ 112 (251)
-+.-.++-..|++|++ ..-+..++.+-|+..|++.+.+ .+|..|..+|..
T Consensus 159 ~~~~~lk~kAL~lLSr-ReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYL 209 (309)
T PRK14136 159 RPARSLKGRALGYLSR-REYSRAELARKLAPYADESDSVEPLLDALEREGWL 209 (309)
T ss_pred ccHHHHHHHHHHHhhc-ccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc
Confidence 4677888888999988 5677888887778889987766 567888877643
No 31
>PRK10039 hypothetical protein; Provisional
Probab=21.49 E-value=1.3e+02 Score=23.42 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=19.9
Q ss_pred cCCCHHHHHHHHHHHhhcC----CeEEEcc
Q 040151 223 GGATSSELRICYKLTTELN----GEVVLGS 248 (251)
Q Consensus 223 GGvTy~E~r~~~els~~~~----~~IiiGs 248 (251)
||.|-.|.|+++|++...+ +.|++..
T Consensus 81 GGlS~VE~R~l~Ela~ga~~~~~~~v~~~~ 110 (127)
T PRK10039 81 GGLSQVEERILIELAVGSTPKGYRQLYIHP 110 (127)
T ss_pred CCccHHHHHHHHHHHhhhcccccceEEEeC
Confidence 8999999999999997542 3555543
No 32
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.68 E-value=1.1e+02 Score=27.56 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=26.2
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEE
Q 040151 215 QCIFEFVVGGATSSELRICYKLTTELNGEVVL 246 (251)
Q Consensus 215 ~~iIVFvvGGvTy~E~r~~~els~~~~~~Iii 246 (251)
+-=.++||||-.-+-.+-|++++++.+.+.+.
T Consensus 210 ~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~ 241 (298)
T PRK01045 210 QADLVIVVGSKNSSNSNRLREVAEEAGAPAYL 241 (298)
T ss_pred hCCEEEEECCCCCccHHHHHHHHHHHCCCEEE
Confidence 34478899999999999999999987765544
No 33
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=20.54 E-value=65 Score=30.21 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=16.0
Q ss_pred hhhhhhcccccCCCceEEEEEEcCC
Q 040151 201 SVLKHALSGFEKIGQCIFEFVVGGA 225 (251)
Q Consensus 201 ~~~~~~~~~~~~~~~~iIVFvvGGv 225 (251)
|.|+....-...+.-+.|||+|||.
T Consensus 20 sKLEyri~ydd~Ke~kaIvfiI~Gf 44 (403)
T PF11144_consen 20 SKLEYRISYDDEKEIKAIVFIIPGF 44 (403)
T ss_pred ceeeEEeecCCCCCceEEEEEeCCc
Confidence 3344443323347889999999984
No 34
>PF00739 X: Trans-activation protein X; InterPro: IPR000236 The Hepatitis B virus (HBV) X gene shares sequences with both the polymerase and precore genes, carries several regulatory signals critical to the replicative cycle, and its product has a transactivating function []. The transactivating function is probably associated with a tumourigenic potential of HBx, since x gene sequences, encoding functional HBx, have been repeatedly found integrated into the genome of liver carcinoma cells [].; GO: 0019079 viral genome replication; PDB: 3I7H_B 3I7K_B.
Probab=20.41 E-value=34 Score=26.66 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=0.0
Q ss_pred CCceEEEEEEcCCCH
Q 040151 213 IGQCIFEFVVGGATS 227 (251)
Q Consensus 213 ~~~~iIVFvvGGvTy 227 (251)
.-.++.|||+||+.+
T Consensus 125 ee~RL~iFVLGGCRH 139 (142)
T PF00739_consen 125 EEIRLMIFVLGGCRH 139 (142)
T ss_dssp ---------------
T ss_pred ccceEEEEEecCccc
Confidence 467899999999864
No 35
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.40 E-value=58 Score=26.26 Aligned_cols=12 Identities=50% Similarity=0.933 Sum_probs=9.3
Q ss_pred CceEEEEEEcCC
Q 040151 214 GQCIFEFVVGGA 225 (251)
Q Consensus 214 ~~~iIVFvvGGv 225 (251)
+..=|+|||||.
T Consensus 96 g~~~i~F~IGGa 107 (157)
T PRK00103 96 GRSDVAFVIGGA 107 (157)
T ss_pred CCccEEEEEcCc
Confidence 444599999985
No 36
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.38 E-value=1.2e+02 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=26.4
Q ss_pred CceEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEc
Q 040151 214 GQCIFEFVVGGATSSELRICYKLTTELNGEVVLG 247 (251)
Q Consensus 214 ~~~iIVFvvGGvTy~E~r~~~els~~~~~~IiiG 247 (251)
+..++|===-+.|.+|++.+.+++++.|+.+.+|
T Consensus 86 g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 86 GKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp TSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 3444444445779999999999999999988876
No 37
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=20.26 E-value=1.2e+02 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccC
Q 040151 216 CIFEFVVGGATSSELRICYKLTTELNGEVVLGSS 249 (251)
Q Consensus 216 ~iIVFvvGGvTy~E~r~~~els~~~~~~IiiGsT 249 (251)
.+-|++.||+|-+.++.+.. .|.+.+..|+
T Consensus 160 ~~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs 189 (212)
T PRK00043 160 DIPIVAIGGITPENAPEVLE----AGADGVAVVS 189 (212)
T ss_pred CCCEEEECCcCHHHHHHHHH----cCCCEEEEeH
Confidence 37799999999765554432 5777766553
No 38
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=20.02 E-value=61 Score=25.59 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=12.4
Q ss_pred EEEEEcCCCHHHHHHHHH
Q 040151 218 FEFVVGGATSSELRICYK 235 (251)
Q Consensus 218 IVFvvGGvTy~E~r~~~e 235 (251)
+|||.||=|+-=++.+++
T Consensus 38 ~I~~~GG~~~~l~~~l~~ 55 (154)
T PF03575_consen 38 AIFLGGGDTFRLLRQLKE 55 (154)
T ss_dssp EEEE--S-HHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHh
Confidence 799999999988887765
Done!