Query 040151
Match_columns 251
No_of_seqs 113 out of 706
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 9.7E-45 3.3E-49 348.4 23.2 225 6-250 338-571 (594)
2 3puk_A Syntaxin-binding protei 100.0 3.4E-43 1.2E-47 337.5 21.3 220 6-250 338-566 (592)
3 1epu_A S-SEC1; parallel beta-s 100.0 1.4E-40 4.9E-45 319.7 22.7 225 6-250 336-574 (591)
4 2xhe_A UNC18; exocytosis, exoc 100.0 6.1E-40 2.1E-44 318.4 19.5 239 6-250 338-601 (650)
5 3c98_A Syntaxin-binding protei 100.0 4.7E-39 1.6E-43 310.1 23.3 225 6-250 350-583 (606)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 1.9E-30 6.4E-35 252.6 14.0 212 6-250 396-647 (671)
7 3bq9_A Predicted rossmann fold 48.9 31 0.001 31.6 6.1 35 214-249 144-183 (460)
8 2lz1_A Nuclear factor erythroi 38.6 47 0.0016 23.2 4.4 30 81-110 43-72 (90)
9 2x5n_A SPRPN10, 26S proteasome 35.4 40 0.0014 26.6 4.3 34 213-246 105-140 (192)
10 3dfg_A Xcrecx, regulatory prot 26.0 1E+02 0.0035 23.5 5.0 50 62-112 14-64 (162)
11 1skn_P DNA-binding domain of S 24.9 1E+02 0.0036 21.5 4.3 28 81-108 39-66 (92)
12 2ki0_A DS119; beta-alpha-beta, 24.7 49 0.0017 18.3 2.0 24 224-247 11-34 (36)
13 2kz5_A Transcription factor NF 23.7 1.1E+02 0.0039 21.3 4.3 29 81-109 43-71 (91)
14 1to0_A Hypothetical UPF0247 pr 23.5 29 0.001 27.2 1.4 12 214-225 99-110 (167)
15 1ns5_A Hypothetical protein YB 22.8 30 0.001 26.8 1.3 9 217-225 97-105 (155)
16 3gh1_A Predicted nucleotide-bi 22.4 1.5E+02 0.0052 27.0 6.0 36 213-249 145-185 (462)
17 1o6d_A Hypothetical UPF0247 pr 21.4 34 0.0012 26.7 1.4 9 217-225 96-104 (163)
18 3szu_A ISPH, 4-hydroxy-3-methy 21.4 86 0.003 27.3 4.1 29 218-246 228-256 (328)
19 3dnf_A ISPH, LYTB, 4-hydroxy-3 20.3 81 0.0028 27.1 3.6 29 218-246 212-240 (297)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=9.7e-45 Score=348.35 Aligned_cols=225 Identities=20% Similarity=0.350 Sum_probs=173.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-Ccc-------hHHHHHHhhhCCCCChhhHHHHHHHHHHhC
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAE-------FKDVIKVLTAKEDVTLDNKLRLLMIAASIY 77 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~-------~k~li~~L~~~~~~~~~dkLRLllLy~l~~ 77 (251)
++++..+++|++||++|++.+++ +|++++++||+|++| |.+ .+.+.++|. ++.++++|||||+|||+|++
T Consensus 338 ~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~ 415 (594)
T 1dn1_A 338 QKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK 415 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc
Confidence 46788899999999999999997 899999999999999 543 235667876 88999999999999999976
Q ss_pred CCCCChHHHHHHHHHcCCChhHHHHHHHHHHhcCCccccccccCCCcccccCCCCCCccccccCccchHHHHHHHHhcCC
Q 040151 78 PEKFEGEKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSRRGKKRTARKDRSGGEEICKYPRSLKIWHKLVEKLGKNE 157 (251)
Q Consensus 78 ~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~k~~~~~~k~~~~~~~~y~~sr~~P~l~~ile~l~~~~ 157 (251)
+|+.++++.+|++++|++.+++.+++||..+|+...+.....|.+.+.++.+ +.++.|++|||.|.|+++++++++|+
T Consensus 416 -~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~~~~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~ 493 (594)
T 1dn1_A 416 -NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDK 493 (594)
T ss_dssp -TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCGGGCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTC
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccccccccccccccC-CCCccceeeccchHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999987654432223233344443 57999999999999999999999999
Q ss_pred CCCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCHHHHHHHHHHH
Q 040151 158 LSKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATSSELRICYKLT 237 (251)
Q Consensus 158 l~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~r~~~els 237 (251)
|++++|||+.++++... ..+.++.|+++|++.+++.+ ...++|+|||||||+||+|+|++|+++
T Consensus 494 L~~~~fP~~~~~~~~~~-~~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els 557 (594)
T 1dn1_A 494 LDTKHYPYISTRSSASF-STTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVT 557 (594)
T ss_dssp SCTTTSCCSSCC------------------------------------------CCCCEEEEEEETCEEHHHHHHHHHHH
T ss_pred CCcccCCccCCCCCccc-cccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHH
Confidence 99999999976643211 11122344478987664321 136899999999999999999999999
Q ss_pred hhc-CCeEEEccCC
Q 040151 238 TEL-NGEVVLGSSK 250 (251)
Q Consensus 238 ~~~-~~~IiiGsT~ 250 (251)
++. +++||||||+
T Consensus 558 ~~~~~~~VilG~t~ 571 (594)
T 1dn1_A 558 QANGKWEVLIGSTH 571 (594)
T ss_dssp HHHSSCEEEEEESS
T ss_pred hhcCCceEEEeeCC
Confidence 986 4899999997
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=3.4e-43 Score=337.54 Aligned_cols=220 Identities=21% Similarity=0.242 Sum_probs=170.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-Ccc---hH----HHHHHhhhCCCCChhhHHHHHHHHHHhC
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAE---FK----DVIKVLTAKEDVTLDNKLRLLMIAASIY 77 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~---~k----~li~~L~~~~~~~~~dkLRLllLy~l~~ 77 (251)
++++..+++|++||++|++.+++ +|++++++||+|++| |.+ .| .++++|. ++.++++|||||+|||+|++
T Consensus 338 ~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL~lLy~L~~ 415 (592)
T 3puk_A 338 RKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRAVLLYIFGI 415 (592)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSSSCTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc
Confidence 46788899999999999999997 899999999999999 543 23 4456675 88899999999999999987
Q ss_pred CCCCChHHHHHHHHHcCCChhHHHHHHHHHHhcCCccccccccCCCcccccCCCCCCccccccCccchHHHHHHHHhcCC
Q 040151 78 PEKFEGEKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSRRGKKRTARKDRSGGEEICKYPRSLKIWHKLVEKLGKNE 157 (251)
Q Consensus 78 ~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~k~~~~~~k~~~~~~~~y~~sr~~P~l~~ile~l~~~~ 157 (251)
+|+.++++.+|++++|++. ++.+|.||..+|....+.. +...+.+|. .+.++.|++|||+|+++++++++++|+
T Consensus 416 -~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~~---~~~~~~rk~-~~~e~~Y~~Sr~~P~l~~ile~~~~g~ 489 (592)
T 3puk_A 416 -NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPPS---QQAKPLRKD-RSAEETFQLSRWTPFIKDIMEDAIDNR 489 (592)
T ss_dssp -CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSSB---SSCCCCCCC-CCCCCGGGSCCCCCTTHHHHHHHHTCC
T ss_pred -CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccCc---cccCccccc-CCCCcceeeeccchHHHHHHHHHHhCC
Confidence 8999999999999999987 8999999999998765442 222334444 357999999999999999999999999
Q ss_pred CCCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCHHHHHHHHHHH
Q 040151 158 LSKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATSSELRICYKLT 237 (251)
Q Consensus 158 l~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~r~~~els 237 (251)
|+++.|||+.+++..+. ..+.++.|.|.| +.+++. ...+++++|||||||+||+|+|++|+++
T Consensus 490 L~~~~fP~~~~~~~~~~-~~~~~s~r~~~w-~~~~~~---------------~~~~~~riiVFivGGvTysE~r~~~els 552 (592)
T 3puk_A 490 LDSKEWPYCSRCPAVWN-GSGAVSARQKPR-TNYLEL---------------DRKNGSRLIIFVIGGITYSEMRCAYEVS 552 (592)
T ss_dssp CCTTTSCC---------------------C-CCCCCC---------------CCSCCSEEEEEEETCEEHHHHHHHHHHH
T ss_pred CCcccCCccCCCCCCcc-CCcccccccccc-ccCccc---------------cccCCCeEEEEEeCCcCHHHHHHHHHHH
Confidence 99999999987643211 011123344788 544321 1236899999999999999999999999
Q ss_pred hhcC-CeEEEccCC
Q 040151 238 TELN-GEVVLGSSK 250 (251)
Q Consensus 238 ~~~~-~~IiiGsT~ 250 (251)
++.+ ++||||||+
T Consensus 553 ~~~~~~~vilG~T~ 566 (592)
T 3puk_A 553 QAHKSCEVIIGSTH 566 (592)
T ss_dssp HHCCSSEEEEEESS
T ss_pred hhcCCceEEEeeCC
Confidence 9875 899999997
No 3
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=1.4e-40 Score=319.74 Aligned_cols=225 Identities=21% Similarity=0.331 Sum_probs=170.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-Ccc-------hHHHHHHhhhCCCCChhhHHHHHHHHHHhC
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAE-------FKDVIKVLTAKEDVTLDNKLRLLMIAASIY 77 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~-------~k~li~~L~~~~~~~~~dkLRLllLy~l~~ 77 (251)
++++..+++|++||++|++.+++ +|++++++||+|++| |.+ .+.++++|. ++..+++|||||+|||++++
T Consensus 336 ~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRLl~Ly~l~~ 413 (591)
T 1epu_A 336 QKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHK 413 (591)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc
Confidence 35677899999999999999999 999999999999999 543 235778886 88899999999999999988
Q ss_pred CCCCChHHHHHHHHHcCCChhHHHHHHHHHHhcCCccccccccCCCcc----cccCCCCCCccccccCccchHHHHHHHH
Q 040151 78 PEKFEGEKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSRRGKKRT----ARKDRSGGEEICKYPRSLKIWHKLVEKL 153 (251)
Q Consensus 78 ~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~k~~~~----~~k~~~~~~~~y~~sr~~P~l~~ile~l 153 (251)
+|++++++.++++.+|++.+++.++.||..+|+...+.....+.... .++. .+.+..|+++||+|++++|+|++
T Consensus 414 -~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~s~~~Pl~~~ive~l 491 (591)
T 1epu_A 414 -GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKE-RQADHTYQMSRWTPYMKDIMEAA 491 (591)
T ss_dssp -TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCTTSGGGSCC-CCSCCSCGGGCCCCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCcccccccccccccccc-CCCCccccccccchhHHHHHHHH
Confidence 79999999999999999999999999999999776544222122111 1222 34677899999999999999999
Q ss_pred hcCCCCCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCHHHHHHH
Q 040151 154 GKNELSKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATSSELRIC 233 (251)
Q Consensus 154 ~~~~l~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~r~~ 233 (251)
++++++++.|||++++.+... ....++.++++|++.+++.. ...++++|||||||+||+|++++
T Consensus 492 ~~~~l~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~---------------~~~~~~viVF~vGG~Ty~E~~~l 555 (591)
T 1epu_A 492 VEDKLDTRHYPFLNGGGPRPS-CQQPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSEMRSA 555 (591)
T ss_dssp HTTCSCTTTSCBTTSCC-----------------------------------------CCCCEEEEEEETCBCHHHHHHH
T ss_pred hcCCCCcccCcccCCCCCccc-cCCccccccCcccCCCCccc---------------cCCCCeEEEEEECCCCHHHHHHH
Confidence 999999999999987543211 11112334467876544311 12467799999999999999999
Q ss_pred HHHHh--hcCCeEEEccCC
Q 040151 234 YKLTT--ELNGEVVLGSSK 250 (251)
Q Consensus 234 ~els~--~~~~~IiiGsT~ 250 (251)
|+|++ ..+++||||||+
T Consensus 556 ~~l~~~~~~~~~viigsT~ 574 (591)
T 1epu_A 556 YEVTQTAKNNWEVILGSTH 574 (591)
T ss_dssp HHHHTSSCSSCEEEEEESS
T ss_pred HHHHhhccCCCeEEEecCC
Confidence 99998 568999999997
No 4
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=6.1e-40 Score=318.39 Aligned_cols=239 Identities=18% Similarity=0.271 Sum_probs=171.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-Ccc-------hHHHHHHhhhCCCCChhhHHHHHHHHHHhC
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAE-------FKDVIKVLTAKEDVTLDNKLRLLMIAASIY 77 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~-------~k~li~~L~~~~~~~~~dkLRLllLy~l~~ 77 (251)
++++..+++|++||++|++.+++ +|++++++||+|++| |.+ .+++.++|. ++..+.+|||||+|||++++
T Consensus 338 ~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~~ll~-~~~~~~~dkLRLl~Ly~l~~ 415 (650)
T 2xhe_A 338 REQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVV-DRRVSTEDKLRCLMLCVLAK 415 (650)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 46788899999999999999999 999999999999999 542 245777876 78899999999999999998
Q ss_pred CCCCChHHHHHHHHHcCCChhHHHHHHHHHHhcCCccccccccCCCcccccCCCCCCccccccCccchHHHHHHHHhcCC
Q 040151 78 PEKFEGEKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSRRGKKRTARKDRSGGEEICKYPRSLKIWHKLVEKLGKNE 157 (251)
Q Consensus 78 ~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~k~~~~~~k~~~~~~~~y~~sr~~P~l~~ile~l~~~~ 157 (251)
+|+++++++++++.+|++.+++.+|+||+.+|+...+..+..+.+...++. .+..|+++||+|++++|||++++++
T Consensus 416 -~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~~~~~~~~rk~---~~~~yv~s~y~Pl~~rlve~l~~~~ 491 (650)
T 2xhe_A 416 -NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRGRKPKTMKRIE---RDMPYVLSRWTPIVKDLMEYIATGQ 491 (650)
T ss_dssp -TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCCCCCCCCCCCC---CCCCSTTCCCCCHHHHHHHHHTTTC
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccccccccccccc---cCCcceeccchHHHHHHHHHHhcCC
Confidence 799999999999999999999999999999998765442222222222332 2338999999999999999999999
Q ss_pred CCCCCCCcccCcCCC-C-----------ccccCCCcccccccccCCCCCCC----CCchhhhhhhc-ccccCCCceEEEE
Q 040151 158 LSKDDYPSHFAVINE-A-----------PVAHSMRSRRTRTWARPRSSDDG----CSSDSVLKHAL-SGFEKIGQCIFEF 220 (251)
Q Consensus 158 l~~~~fp~~~~~~~~-~-----------~~~~s~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~iIVF 220 (251)
|+++.|||++++.+. . .+..+.++.+.++|++.+.+... +++.+..+... .....+++++|||
T Consensus 492 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF 571 (650)
T 2xhe_A 492 LDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVF 571 (650)
T ss_dssp SCTTTSCBSSCGGGSCCCC---------------------------------------------------CCCSCEEEEE
T ss_pred CCcccCceeCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCEEEEE
Confidence 999999999765322 0 00111123344789876543221 11111110000 0012457889999
Q ss_pred EEcCCCHHHHHHHHHHHhhcCCeEEEccCC
Q 040151 221 VVGGATSSELRICYKLTTELNGEVVLGSSK 250 (251)
Q Consensus 221 vvGGvTy~E~r~~~els~~~~~~IiiGsT~ 250 (251)
||||+||+|+|++|+|+++.+++||||||+
T Consensus 572 ~iGGvTysEi~al~~ls~~~~~~viigsT~ 601 (650)
T 2xhe_A 572 INGTVSYNEIRCAYEVSQSSGYEVYIGAHN 601 (650)
T ss_dssp EEEEECHHHHHHHHHHHTTSSSEEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHhcCCCEEEEeeCC
Confidence 999999999999999998889999999996
No 5
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=4.7e-39 Score=310.07 Aligned_cols=225 Identities=20% Similarity=0.346 Sum_probs=171.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccC-Ccc-------hHHHHHHhhhCCCCChhhHHHHHHHHHHhC
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFC-DAE-------FKDVIKVLTAKEDVTLDNKLRLLMIAASIY 77 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~g-d~~-------~k~li~~L~~~~~~~~~dkLRLllLy~l~~ 77 (251)
.+++..+++|++|+++|++.++ ++|++++++||+|+|| |.+ .+.++++|. ++.++++|||||+|||++++
T Consensus 350 ~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL~lLy~l~~ 427 (606)
T 3c98_A 350 QKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK 427 (606)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHSBCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 4678889999999999999996 6899999999999998 543 346888886 88999999999999999988
Q ss_pred CCCCChHHHHHHHHHcCCChhHHHHHHHHHHhcCCccccccccCCCcccccCCCCCCccccccCccchHHHHHHHHhcCC
Q 040151 78 PEKFEGEKGLNLMKLAKLTADDMTAVNNMRLFGGSSEKKKSRRGKKRTARKDRSGGEEICKYPRSLKIWHKLVEKLGKNE 157 (251)
Q Consensus 78 ~~~~~~~~~~~ll~~~gl~~~~~~~l~~l~~lg~~~~~~~~~~k~~~~~~k~~~~~~~~y~~sr~~P~l~~ile~l~~~~ 157 (251)
+|+.++++.++++.++++..++.++.||..+|....+.....+...+.++. ...+..|.++||+|+++++++++++++
T Consensus 428 -~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~ 505 (606)
T 3c98_A 428 -NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDK 505 (606)
T ss_dssp -TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCTTTCCCCCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTC
T ss_pred -cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccccccccchhhcc-CCcccccceecchHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999998765443222222222322 346788999999999999999999999
Q ss_pred CCCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcccccCCCceEEEEEEcCCCHHHHHHHHHHH
Q 040151 158 LSKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALSGFEKIGQCIFEFVVGGATSSELRICYKLT 237 (251)
Q Consensus 158 l~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~r~~~els 237 (251)
|+++.|||+.+......+.... +.+.+.|++.+.++. ..+++++|||||||+||+|+|++|+++
T Consensus 506 L~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~iIVFvvGGvTy~E~~~l~~ls 569 (606)
T 3c98_A 506 LDTKHYPYISTRSSASFSTTAV-SARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVT 569 (606)
T ss_dssp SCTTTSCCSSCC------------------------------------------CCCSEEEEEEETCEEHHHHHHHHHHH
T ss_pred CCcccCcccCCCCccccccccc-ccccCCccccCCCCC---------------CCCCCEEEEEEECCcCHHHHHHHHHHH
Confidence 9999999998765432211111 223366776655421 246889999999999999999999999
Q ss_pred hhc-CCeEEEccCC
Q 040151 238 TEL-NGEVVLGSSK 250 (251)
Q Consensus 238 ~~~-~~~IiiGsT~ 250 (251)
++. +++||||||+
T Consensus 570 ~~~~~~~viiGsT~ 583 (606)
T 3c98_A 570 QANGKWEVLIGSTH 583 (606)
T ss_dssp HHHSSCEEEEEESS
T ss_pred HHcCCcEEEEEeCC
Confidence 876 4799999996
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=99.97 E-value=1.9e-30 Score=252.58 Aligned_cols=212 Identities=17% Similarity=0.151 Sum_probs=148.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhccCCcchHHHHHHhhhCCC-CChhhHHHHHHHHHHhCCC-CCCh
Q 040151 6 TLHVTFVAHDSALHQKINRIIRETGLRELGQLEQDLVFCDAEFKDVIKVLTAKED-VTLDNKLRLLMIAASIYPE-KFEG 83 (251)
Q Consensus 6 ~~~~~~v~~H~~ia~~~~~~~~~~~L~~~~elEQ~la~gd~~~k~li~~L~~~~~-~~~~dkLRLllLy~l~~~~-~~~~ 83 (251)
++++..+++|++||++|++.+++++|++++++||+|+ +..+.++++++|. ++. .+++|||||+|||+|++ + |+++
T Consensus 396 ~~~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll~-~~~~~~~~dkLRLl~Ly~l~~-~~g~~~ 472 (671)
T 1mqs_A 396 TAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDILK-DGKTNNLEDKLRSFIVLYLTS-TTGLPK 472 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHTT-SCCSTTHHHHHHHHHHHHHHC-SSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHHh-CcCCCCHHHHHHHHHHHHHHc-CCCCCH
Confidence 4678889999999999999999999999999999997 4333457888886 544 49999999999999988 7 8998
Q ss_pred HHH---HHHHHHcCCChhHHHHHHHHHHhcCCc-----ccc----------ccccCCCcccc---cCCC-C-CCcccccc
Q 040151 84 EKG---LNLMKLAKLTADDMTAVNNMRLFGGSS-----EKK----------KSRRGKKRTAR---KDRS-G-GEEICKYP 140 (251)
Q Consensus 84 ~~~---~~ll~~~gl~~~~~~~l~~l~~lg~~~-----~~~----------~~~~k~~~~~~---k~~~-~-~~~~y~~s 140 (251)
+++ .++++.+|++...+..|.++..++... ... ++.-......+ +-.. + ......++
T Consensus 473 ~~~~~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~r~~~~~~~~g~~~~~~~v~ 552 (671)
T 1mqs_A 473 DFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIK 552 (671)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------CHHHHHTTTSSCSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHHHHHHHHhccchhhHHHhHH
Confidence 884 566788999877777777776553211 000 00000000000 0000 0 00011123
Q ss_pred -----CccchHHHHHHHHhcC-----C--CCCCCCCcccCcCCCCccccCCCcccccccccCCCCCCCCCchhhhhhhcc
Q 040151 141 -----RSLKIWHKLVEKLGKN-----E--LSKDDYPSHFAVINEAPVAHSMRSRRTRTWARPRSSDDGCSSDSVLKHALS 208 (251)
Q Consensus 141 -----r~~P~l~~ile~l~~~-----~--l~~~~fp~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (251)
++.|.+.+++++++++ + ++.++|||++|..+.. ..+. +. .
T Consensus 553 n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~~~~--~~~~--------~~--~---------------- 604 (671)
T 1mqs_A 553 KLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRG--SHTR--------KP--K---------------- 604 (671)
T ss_dssp HTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSSC--SSSC--------CC--C----------------
T ss_pred hhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCCCCcCC--CCCC--------Cc--c----------------
Confidence 4456688999999998 3 6779999998653210 0000 00 0
Q ss_pred cccCCCceEEEEEEcCCCHHHHHHHHHHHhhc---CCeEEEccCC
Q 040151 209 GFEKIGQCIFEFVVGGATSSELRICYKLTTEL---NGEVVLGSSK 250 (251)
Q Consensus 209 ~~~~~~~~iIVFvvGGvTy~E~r~~~els~~~---~~~IiiGsT~ 250 (251)
..+++++|||||||+||+|++++|+|+++. +++||||||+
T Consensus 605 --~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~ 647 (671)
T 1mqs_A 605 --RQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTA 647 (671)
T ss_dssp --CCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESS
T ss_pred --cCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeecc
Confidence 125799999999999999999999999873 7999999996
No 7
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=48.87 E-value=31 Score=31.57 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=23.0
Q ss_pred CceEEEEEEcC--CCHHHHHHHHHHHhh---cCCeEEEccC
Q 040151 214 GQCIFEFVVGG--ATSSELRICYKLTTE---LNGEVVLGSS 249 (251)
Q Consensus 214 ~~~iIVFvvGG--vTy~E~r~~~els~~---~~~~IiiGsT 249 (251)
.++++||+ || ++-.++..++++.+. .|..|+.||-
T Consensus 144 ~~~ivVv~-GSs~~~~~~Ye~A~eLGr~LA~~G~~LVtGGG 183 (460)
T 3bq9_A 144 EPNMVVCW-GGHSINEIEYKYTKDVGYHIGLRGLNICTGCG 183 (460)
T ss_dssp CSCEEEEE-CCSSCCHHHHHHHHHHHHHHHHTTCEEEECCS
T ss_pred CCCEEEEE-cCCCCCCHHHHHHHHHHHHHHHCCCEEEeCCc
Confidence 44555544 66 345566777777764 5899999984
No 8
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=38.56 E-value=47 Score=23.18 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=26.4
Q ss_pred CChHHHHHHHHHcCCChhHHHHHHHHHHhc
Q 040151 81 FEGEKGLNLMKLAKLTADDMTAVNNMRLFG 110 (251)
Q Consensus 81 ~~~~~~~~ll~~~gl~~~~~~~l~~l~~lg 110 (251)
++-++++++|+..+++.+++.+|..+..=|
T Consensus 43 Lpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRg 72 (90)
T 2lz1_A 43 LPVVDFNEMMSKEQFNEAQLALIRDIRRRG 72 (90)
T ss_dssp SCHHHHHHHHHHSCCCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 456888999999999999999999998754
No 9
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=35.40 E-value=40 Score=26.63 Aligned_cols=34 Identities=21% Similarity=0.058 Sum_probs=24.1
Q ss_pred CCceEEEEEEcCCC--HHHHHHHHHHHhhcCCeEEE
Q 040151 213 IGQCIFEFVVGGAT--SSELRICYKLTTELNGEVVL 246 (251)
Q Consensus 213 ~~~~iIVFvvGGvT--y~E~r~~~els~~~~~~Iii 246 (251)
.++++|||+.||.+ -.+...+.+..++.|++|++
T Consensus 105 ~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~ 140 (192)
T 2x5n_A 105 QRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDI 140 (192)
T ss_dssp SEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEE
Confidence 46789999999885 35555555566667887775
No 10
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=26.01 E-value=1e+02 Score=23.54 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHhCCCCCChHHHHHHHHHcCCChhHH-HHHHHHHHhcCC
Q 040151 62 TLDNKLRLLMIAASIYPEKFEGEKGLNLMKLAKLTADDM-TAVNNMRLFGGS 112 (251)
Q Consensus 62 ~~~dkLRLllLy~l~~~~~~~~~~~~~ll~~~gl~~~~~-~~l~~l~~lg~~ 112 (251)
.+..+++-.+|+.|++ ...+..++.+-|...|++.+.+ .+|..|...|..
T Consensus 14 ~~~~~a~~~Al~~Ls~-r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~l 64 (162)
T 3dfg_A 14 FKEQTPVQRALGLLVH-REHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQ 64 (162)
T ss_dssp ---CCHHHHHHHHHHH-SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHhhc-hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 3456778888888887 5678888887778889988776 457777766633
No 11
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=24.91 E-value=1e+02 Score=21.48 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHcCCChhHHHHHHHHHH
Q 040151 81 FEGEKGLNLMKLAKLTADDMTAVNNMRL 108 (251)
Q Consensus 81 ~~~~~~~~ll~~~gl~~~~~~~l~~l~~ 108 (251)
++-++++++|+..+++.+++..+.....
T Consensus 39 lpv~efn~lLk~~~Ls~~Ql~~ir~~RR 66 (92)
T 1skn_P 39 MSLSELQQVLKNESLSEYQRQLIRKIRR 66 (92)
T ss_dssp SCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999888775
No 12
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=24.69 E-value=49 Score=18.30 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHhhcCCeEEEc
Q 040151 224 GATSSELRICYKLTTELNGEVVLG 247 (251)
Q Consensus 224 GvTy~E~r~~~els~~~~~~IiiG 247 (251)
|.|-+|...+.|-+++.+++|-+-
T Consensus 11 ggtpeelkklkeeakkanirvtfw 34 (36)
T 2ki0_A 11 GGTPEELKKLKEEAKKANIRVTFW 34 (36)
T ss_dssp CCCHHHHHHHHHHHHHHCCCCCBC
T ss_pred cCCHHHHHHHHHHHHhccEEEEee
Confidence 558999999999988888776543
No 13
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=23.66 E-value=1.1e+02 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHcCCChhHHHHHHHHHHh
Q 040151 81 FEGEKGLNLMKLAKLTADDMTAVNNMRLF 109 (251)
Q Consensus 81 ~~~~~~~~ll~~~gl~~~~~~~l~~l~~l 109 (251)
++-++++++|...+++..++.+|.....=
T Consensus 43 lpv~efn~ll~~~~Ls~~Ql~lIrdiRRR 71 (91)
T 2kz5_A 43 LPVDDFNELLARYPLTESQLALVRDIRRR 71 (91)
T ss_dssp SCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999988854
No 14
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=23.46 E-value=29 Score=27.19 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=9.0
Q ss_pred CceEEEEEEcCC
Q 040151 214 GQCIFEFVVGGA 225 (251)
Q Consensus 214 ~~~iIVFvvGGv 225 (251)
+..=|+|||||.
T Consensus 99 G~~~i~FvIGGa 110 (167)
T 1to0_A 99 GKSKVTFVIGGS 110 (167)
T ss_dssp TCCEEEEEECCS
T ss_pred CCceEEEEEECC
Confidence 434599999995
No 15
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=22.82 E-value=30 Score=26.77 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=7.6
Q ss_pred EEEEEEcCC
Q 040151 217 IFEFVVGGA 225 (251)
Q Consensus 217 iIVFvvGGv 225 (251)
=|+|||||.
T Consensus 97 ~i~FvIGG~ 105 (155)
T 1ns5_A 97 DVSLLIGGP 105 (155)
T ss_dssp CEEEEECBT
T ss_pred eEEEEEECC
Confidence 489999995
No 16
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=22.43 E-value=1.5e+02 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=24.2
Q ss_pred CCceEEEEEEcC--CCHHHHHHHHHHHhh---cCCeEEEccC
Q 040151 213 IGQCIFEFVVGG--ATSSELRICYKLTTE---LNGEVVLGSS 249 (251)
Q Consensus 213 ~~~~iIVFvvGG--vTy~E~r~~~els~~---~~~~IiiGsT 249 (251)
..++++| |+|+ +.-.++..++++.+. .|..|+.||-
T Consensus 145 r~~~IvV-~cGSs~~~p~yye~A~eLGr~LA~~G~~LVtGGG 185 (462)
T 3gh1_A 145 ATPNLVV-CWGGHSINEVEYQYTREVGHELGLRELNICTGCG 185 (462)
T ss_dssp CCSCEEE-EECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCS
T ss_pred CCCCEEE-EECCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCc
Confidence 4555555 5555 455667777777764 4899999984
No 17
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=21.44 E-value=34 Score=26.71 Aligned_cols=9 Identities=22% Similarity=0.612 Sum_probs=7.7
Q ss_pred EEEEEEcCC
Q 040151 217 IFEFVVGGA 225 (251)
Q Consensus 217 iIVFvvGGv 225 (251)
=|+|||||.
T Consensus 96 ~i~FvIGGa 104 (163)
T 1o6d_A 96 DITILIGGP 104 (163)
T ss_dssp CEEEEECCT
T ss_pred eEEEEEECC
Confidence 489999995
No 18
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=21.43 E-value=86 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.7
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhcCCeEEE
Q 040151 218 FEFVVGGATSSELRICYKLTTELNGEVVL 246 (251)
Q Consensus 218 IVFvvGGvTy~E~r~~~els~~~~~~Iii 246 (251)
+++||||-+-+-.+-|++++++.+.+.++
T Consensus 228 ~miVVGg~nSSNT~rL~eia~~~g~~ty~ 256 (328)
T 3szu_A 228 VVLVVGSKNSSNSNRLAELAQRMGKRAFL 256 (328)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEeCCCCCchHHHHHHHHHHhCCCEEE
Confidence 67789999999999999999988765543
No 19
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=20.25 E-value=81 Score=27.07 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.1
Q ss_pred EEEEEcCCCHHHHHHHHHHHhhcCCeEEE
Q 040151 218 FEFVVGGATSSELRICYKLTTELNGEVVL 246 (251)
Q Consensus 218 IVFvvGGvTy~E~r~~~els~~~~~~Iii 246 (251)
+++||||-+-+-.+-|+|++++.+.+.++
T Consensus 212 ~miVVGg~nSSNT~rL~eia~~~~~~ty~ 240 (297)
T 3dnf_A 212 VMIIIGGKNSGNTRRLYYISKELNPNTYH 240 (297)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHCSSEEE
T ss_pred EEEEECCCCCchhHHHHHHHHhcCCCEEE
Confidence 67789999999999999999887654443
Done!