BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040152
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 106/132 (80%)
Query: 161 LPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVI 220
LPSI+P+ +TI++ G PNVGKSSFMN ++RA+VDVQ Y+FTTK+L+VGH D+K +YQ+I
Sbjct: 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQII 81
Query: 221 DTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM 280
DTPG+LDR FE+RN IEM +ITALAH+ +LF +DIS CG +I +Q LF+SIKS+F
Sbjct: 82 DTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS 141
Query: 281 NKPLIIVCNKTD 292
NK ++I NK D
Sbjct: 142 NKSIVIGFNKID 153
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 155/288 (53%)
Query: 6 FKKITVVPNGKDIVDIILSRTQRQTPTVVHKGYSITRLRQFYMRKVKYTQQNFFEKLSTI 65
F++ V +++D R ++ + +G + + R +V+ + L +
Sbjct: 5 FERXPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKV 64
Query: 66 IDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYR 125
++ P L + FY +L+ VL ++D + A I+ A +I ++ + YV+ ++Y +
Sbjct: 65 LERTPGLSTLPKFYQELVDVLVDRDTFHKAXAGIDWAIRIIRELEERYVERIRYSNDPNE 124
Query: 126 CKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFM 185
L+ GR+ +V++ I L YL + R+ + LP +D T++I G+PNVGKS+ +
Sbjct: 125 IAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLL 184
Query: 186 NKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245
+T A ++ Y FTT+ + VG + Y RYQ+IDTPG+LDRP +RN IE +I AL
Sbjct: 185 KALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244
Query: 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293
+L + +++ D S CG+ + +Q LF + F + P ++V NK D+
Sbjct: 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFE 231
+ GYPN GKSS + +TRA + PY FTT S +G + + R+ + D PGI++ E
Sbjct: 162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221
Query: 232 DRNIIEMCSITALAHL-RSAVLFF-LDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCN 289
+ + + L H+ R+ VL + LD + ++ + + +P ++ N
Sbjct: 222 GKGL----GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 277
Query: 290 KTDL 293
K DL
Sbjct: 278 KVDL 281
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 171 ILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVI--DTPGILD 227
+ I G PNVGKS+ +N + V + P A TT+ +G + Q+I DTPGI +
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-EAQIIFLDTPGIYE 70
Query: 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIV 287
D M I + + V+ F+ I + G+ + + IK L NKP+I+V
Sbjct: 71 PKKSDVLGHSMVEIAKQSLEEADVILFM-IDATEGWRPRDEEIYQNFIKPL--NKPVIVV 127
Query: 288 CNKTD 292
NK D
Sbjct: 128 INKID 132
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 171 ILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVI--DTPGILD 227
+ I G PNVGKS+ +N + V + P A TT+ +G + Q+I DTPGI +
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-EAQIIFLDTPGIYE 71
Query: 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIV 287
D M I + + V+ F+ I + G+ + + IK L NKP+I+V
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFM-IDATEGWRPRDEEIYQNFIKPL--NKPVIVV 128
Query: 288 CNKTD 292
NK D
Sbjct: 129 INKID 133
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 171 ILICGYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
+ I G PNVGKSS +N +++D V TT+ + + QV+DT GI +
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286
Query: 230 FEDRNI-IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVC 288
+ I +E A +A L L I + G++ Q ++ +K ++PLI+V
Sbjct: 287 DQVEKIGVERSRQAA----NTADLVLLTIDAATGWTTGDQ-EIYEQVK----HRPLILVM 337
Query: 289 NKTDL 293
NK DL
Sbjct: 338 NKIDL 342
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 175 GYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRN 234
G+P+VGKS+ ++K+T + + Y FTT G YK + Q++D PGI+D + R
Sbjct: 79 GFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG 138
Query: 235 IIEMCSITALAHLRSAVLFFLDIS 258
+ A+A + + LD++
Sbjct: 139 --RGKQVIAVARTCNLLFIILDVN 160
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 151 LEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGH 209
LE R++ RLP R I++ G NVGKSSFMN + +V V YA TT
Sbjct: 18 LEDPRRYTMRLPDAG-FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPV--- 73
Query: 210 TDYKYLRYQ------VIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGY 263
YK + ++DTPG+ D + L LR + CG
Sbjct: 74 --YKSMELHPIGPVTLVDTPGLDD-------------VGELGRLRVEKARRVFYRADCGI 118
Query: 264 SIAQQAALFHS--IKSLF--MNKPLIIVCNKTDL 293
+ A + + +LF M P ++V NK D+
Sbjct: 119 LVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDV 152
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 171 ILICGYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
++I G PN GKSS +N + R V A TT+ + H + +IDT G+ +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 69
Query: 230 FEDRNIIEMCSIT-ALAHLRSA--VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLII 286
E +E I A + A VLF +D + + A+ F I L P+ +
Sbjct: 70 DE----VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF--IARLPAKLPITV 123
Query: 287 VCNKTDL 293
V NK D+
Sbjct: 124 VRNKADI 130
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 171 ILICGYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
++I G PN GKSS +N + R V A TT+ + H + +IDT G+ +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66
Query: 230 FEDRNIIEMCSIT-ALAHLRSA--VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLII 286
E +E I A + A VLF +D + + A+ F I L P+ +
Sbjct: 67 DE----VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF--IARLPAKLPITV 120
Query: 287 VCNKTDL 293
V NK D+
Sbjct: 121 VRNKADI 127
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 171 ILICGYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
++I G PNVGKS+ +N++ D V TT+ + + + ++++DT G+
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS-- 303
Query: 230 FEDRNIIEMCSIT-ALAHLRSA--VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLII 286
E +++E I L + A VLF LD S + + IK NK ++
Sbjct: 304 -ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD---EEDRKILERIK----NKRYLV 355
Query: 287 VCNKTDL 293
V NK D+
Sbjct: 356 VINKVDV 362
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 160 RLPSIDPNTRTILICGYPNVGKSSFMNKITRADV----DVQPYAFTTKSLFVGHTDYKYL 215
R + P LI G PNVGKS+ +N++ + ++ D + + + VG
Sbjct: 112 RAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK------ 165
Query: 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDIS 258
+++DTPGIL FED + ++T ++ +++ D++
Sbjct: 166 ELELLDTPGILWPKFEDELVGLRLAVT--GAIKDSIINLQDVA 206
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 171 ILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
+ I G PNVGKS+ +N + V + P TT+ G + +DTPG L +P
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG-LHKP 68
Query: 230 ------FEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP 283
F D+ + E ALA + +AV++ +D+ + + ++K L P
Sbjct: 69 MDALGEFMDQEVYE-----ALADV-NAVVWVVDLRHP---PTPEDELVARALKPLVGKVP 119
Query: 284 LIIVCNKTD 292
+++V NK D
Sbjct: 120 ILLVGNKLD 128
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 171 ILICGYPNVGKSSFMNKIT-RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
++I G PN GKSS +N + R V A TT+ + H +IDT G+ +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREAS 66
Query: 230 FEDRNIIEMCSIT-ALAHLRSA--VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLII 286
E +E I A + A VLF +D + + A+ F I L P+ +
Sbjct: 67 DE----VERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEF--IARLPAKLPITV 120
Query: 287 VCNKTDL 293
V NK D+
Sbjct: 121 VRNKADI 127
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 171 ILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPG--ILD 227
+ I G PNVGKS+ N+I + V+ T+ ++ + +IDT G I D
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ--AALFHSIKSLFMNKPLI 285
PF + ++ +A + V+ F+ ++G G + A + A + + K KP++
Sbjct: 86 EPF----LAQIRQQAEIAMDEADVIIFM-VNGREGVTAADEEVAKILYRTK-----KPVV 135
Query: 286 IVCNKTD 292
+ NK D
Sbjct: 136 LAVNKLD 142
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 151 LEQIRQHMARLPSIDPNTRTILIC--GYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFV 207
L+ + +H +P N I C G PNVGKSS +N + + V V A TT+
Sbjct: 176 LDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD 235
Query: 208 GHTDYKYLRYQVIDTPGI 225
Y + ++DT G+
Sbjct: 236 TSFTYNQQEFVIVDTAGM 253
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
I + G PNVGKS+ N +T +V + + T G +Y +++V+D PG+
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTP 223
I + G PNVGKS+F + T DV++ Y FTT VG T Y + D P
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVT------YAITDHP 49
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 170 TILICGYPNVGKSSFMNK-ITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228
T+LI G PNVGKS+ NK + + V+ T+ ++ ++++DT G+ D
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62
Query: 229 PFEDRNII-EMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269
P ++II + L +R A L + G G + ++
Sbjct: 63 P---QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDES 101
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 171 ILICGYPNVGKSSFMNKI-TRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229
+ I G PNVGKS+ N I + V P TT+ +Y +DT G+ +
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242
Query: 230 -FEDRNIIEMCSITALAHLRSA--VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLII 286
E R + + + + + A V+ LD + + A L + ++
Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXER-----RGRASVV 297
Query: 287 VCNKTDL 293
V NK DL
Sbjct: 298 VFNKWDL 304
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 171 ILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPG--ILD 227
+ I G PNVGKS+ N+I + V+ T+ ++ + +IDT G I D
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ--AALFHSIKSLFMNKPLI 285
PF + ++ +A + V+ F ++G G + A + A + + K KP++
Sbjct: 66 EPF----LAQIRQQAEIAXDEADVIIFX-VNGREGVTAADEEVAKILYRTK-----KPVV 115
Query: 286 IVCNKTD 292
+ NK D
Sbjct: 116 LAVNKLD 122
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 151 LEQIRQHMARLPSIDPNTRTILIC--GYPNVGKSSFMNK-ITRADVDVQPYAFTTKSLFV 207
L+ + +H +P N I C G PNVGKSS +N + V V A TT+
Sbjct: 156 LDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVD 215
Query: 208 GHTDYKYLRYQVIDTPG 224
Y + ++DT G
Sbjct: 216 TSFTYNQQEFVIVDTAG 232
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ G VGKSS +N I V V P+ A + +
Sbjct: 16 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 75
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM 238
V T + +IDTPG+++ + + +E+
Sbjct: 76 VSRTMGGFT-INIIDTPGLVEAGYVNHQALEL 106
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ G VGKSS +N I V V P+ A + +
Sbjct: 17 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 76
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM 238
V T + +IDTPG+++ + + +E+
Sbjct: 77 VSRTMGGF-TINIIDTPGLVEAGYVNHQALEL 107
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ G VGKSS +N I V V P+ A + +
Sbjct: 17 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 76
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM 238
V T + +IDTPG+++ + + +E+
Sbjct: 77 VSRTMGGFT-INIIDTPGLVEAGYVNHQALEL 107
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 149 AYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNK-ITRADVDVQPY-AFTTKSLF 206
A E++ + +L D N+ T+L+ G VGKSS +N I V V P+ A + +
Sbjct: 17 ATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM 76
Query: 207 VGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM 238
V T + +IDTPG+++ + + +E+
Sbjct: 77 VSRTMGGFT-INIIDTPGLVEAGYVNHQALEL 107
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPY-AFTTKSLFVG-HTDYKYLRYQVIDTPGILDR 228
I I G PNVGKS+ +NK+ + + A TT+ VG HT+ Y + +DTPG+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY-QAIYVDTPGL--H 64
Query: 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNK------ 282
E R I + + A + + L + G+ + + +NK
Sbjct: 65 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTR----------WTPDDEMVLNKLREGKA 114
Query: 283 PLIIVCNKTD 292
P+I+ NK D
Sbjct: 115 PVILAVNKVD 124
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPY-AFTTKSLFVG-HTDYKYLRYQVIDTPGILDR 228
I I G PNVGKS+ +NK+ + + A TT+ VG HT+ Y + +DTPG+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY-QAIYVDTPGL--H 67
Query: 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNK------ 282
E R I + + A + + L + G+ + + +NK
Sbjct: 68 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTR----------WTPDDEMVLNKLREGKA 117
Query: 283 PLIIVCNKTD 292
P+I+ NK D
Sbjct: 118 PVILAVNKVD 127
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
+T+ + G PNVGK++ N +T V + T G +Y+ + V+D PGI
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 171 ILICGYPNVGKSSFMNKI--TRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228
++I G PNVGKSS N++ R+ V V T+ L G + R+ ++DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQ-QAALFHSIKSLFMNKPLIIV 287
++ I E L A + + G + A + A + K KP+I+V
Sbjct: 63 DKWEKKIQEKVDRA----LEDAEVVLFAVDGRAELTQADYEVAEYLRRK----GKPVILV 114
Query: 288 CNKTD 292
K D
Sbjct: 115 ATKVD 119
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG 208
+ I G PNVGKS+ N +TRA+ Y F T VG
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG 208
+ I G PNVGKS+ N +TRA+ Y F T VG
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 142 KRIGPSLAYLEQIRQHMARLPSIDPNTR----TILICGYPNVGKSSFMNKITRADVDVQP 197
+RI + LE I+ + + SI+ N R +I I GY N GK+S N +T V
Sbjct: 151 RRINKLMKELESIK--IFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT 208
Query: 198 YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDI 257
FTT S + ++DT G + R + + + A A++ +D
Sbjct: 209 KLFTTMSPKRYAIPINNRKIMLVDTVGFI-RGIPPQIVDAFFVTLSEAKYSDALILVIDS 267
Query: 258 SGSCGYSIAQQAALFHSIKSLFMN-KPLIIVCNKTD 292
+ S I + F ++ + ++ KP+++ NK D
Sbjct: 268 TFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTT 202
I G PNVGKS+ N +T+A ++ Y F T
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCT 36
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 142 KRIGPSLAYLEQIRQHMARLPSIDPNTR----TILICGYPNVGKSSFMNKITRADVDVQP 197
+RI + LE I+ + + SI+ N R +I I GY N GK+S N +T V
Sbjct: 151 RRINKLMKELESIK--IFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT 208
Query: 198 YAFTTKSLFVGHTDYKYLRYQVIDT-PGILDRPFEDRNIIEMCSIT-ALAHLRSAVLFFL 255
FTT S + ++DT P I P I++ +T + A A++ +
Sbjct: 209 KLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIP---PQIVDAFFVTLSEAKYSDALILVI 265
Query: 256 DISGSCGYSIAQQAALFHSIKSLFMN-KPLIIVCNKTD 292
D + S I + F ++ + ++ KP+++ NK D
Sbjct: 266 DSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 171 ILICGYPNVGKSSFMNKIT---RADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL 226
+LI G PN GKS+ +NK+ + V QP F K ++DTPGIL
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVK-----ILDTPGIL 155
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR-YQVIDTPGILDRP 229
+ + G+P+VGKS+ ++ ++ A + Y FTT +G + R + D PG+++
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGA 220
Query: 230 FEDRNIIEMCSITALAHLRSA--VLFFLDISGSCG------YSIAQQAALFHSIKSLFMN 281
+ + L H+ ++ +D SG G Y Q ++++
Sbjct: 221 HQGVGLGHQF----LRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYNLR--LTE 274
Query: 282 KPLIIVCNKTD 292
+P IIV NK D
Sbjct: 275 RPQIIVANKXD 285
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 142 KRIGPSLAYLEQIRQHMARLPSIDPNTR----TILICGYPNVGKSSFMNKITRADVDVQP 197
+RI + LE I+ + + SI+ N R +I I GY N GK+S N +T V
Sbjct: 151 RRINKLMKELESIK--IFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT 208
Query: 198 YAFTTKSLFVGHTDYKYLRYQVIDT--------PGILDRPFEDRNIIEMCSITALAHLRS 249
FTT S + ++DT P I+D F +++ A
Sbjct: 209 KLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIPPQIVDAFF--------VTLSE-AKYSD 259
Query: 250 AVLFFLDISGSCGYSIAQQAALFHSIKSLFMN-KPLIIVCNKTD 292
A++ +D + S I + F ++ + ++ KP+++ NK D
Sbjct: 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 158 MARLPSIDPNTRTILICGYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLR 216
+ L D N+ TIL+ G VGKSS +N I V + P+ +
Sbjct: 29 LGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT 88
Query: 217 YQVIDTPGILD 227
+IDTPG+++
Sbjct: 89 LNIIDTPGLIE 99
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTT 202
I I G PNVGKS+F N +T + + + F T
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCT 56
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 153 QIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTD 211
++ + + L D N+ TIL+ G VGKSS +N I V + P+
Sbjct: 24 KLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS 83
Query: 212 YKYLRYQVIDTPGILD 227
+IDTPG+++
Sbjct: 84 RAGFTLNIIDTPGLIE 99
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224
+ + G PNVGK+S N +T V + T G YK +ID PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224
+ + G PNVGK+S N +T V + T G YK +ID PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224
+ + G PNVGK+S N +T V + T G YK +ID PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 172 LICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225
L+ G PN GK++ N +T A+ V + T G ++ D PG+
Sbjct: 5 LLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGV 58
>pdb|2YK0|A Chain A, Structure Of The N-Terminal Nts-Dbl1-Alpha And Cidr-Gamma
Double Domain Of The Pfemp1 Protein From Plasmodium
Falciparum Varo Strain
Length = 790
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 81 DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLL--KYGDSLYRCKSLKVAALGRMC 138
D HVL NK+ Y++ N R+ +K KD V +L + D + CK+ A G+ C
Sbjct: 667 DNFHVLKNKEEYEICNVDDN-CRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKEC 725
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,345,072
Number of Sequences: 62578
Number of extensions: 328169
Number of successful extensions: 1034
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 54
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)