Query 040152
Match_columns 293
No_of_seqs 433 out of 2631
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1084 Predicted GTPase [Gene 100.0 2.4E-73 5.1E-78 495.4 32.4 291 2-293 1-292 (346)
2 KOG1490 GTP-binding protein CR 100.0 1.1E-69 2.4E-74 491.3 25.1 293 1-293 1-293 (620)
3 TIGR03156 GTP_HflX GTP-binding 99.9 2.5E-26 5.4E-31 210.0 20.8 230 50-293 75-313 (351)
4 PRK11058 GTPase HflX; Provisio 99.9 1.8E-26 3.9E-31 215.6 18.6 228 50-293 83-321 (426)
5 COG2262 HflX GTPases [General 99.9 2.5E-26 5.5E-31 206.7 18.1 225 50-293 78-316 (411)
6 cd01897 NOG NOG1 is a nucleola 99.9 9.3E-23 2E-27 167.4 14.3 125 169-293 1-125 (168)
7 PF02421 FeoB_N: Ferrous iron 99.9 8.1E-21 1.8E-25 153.4 13.1 115 170-293 2-117 (156)
8 cd01878 HflX HflX subfamily. 99.8 8.3E-20 1.8E-24 155.1 16.1 145 144-293 18-165 (204)
9 COG1160 Predicted GTPases [Gen 99.8 7.1E-20 1.5E-24 167.5 13.7 118 169-292 4-123 (444)
10 KOG0084 GTPase Rab1/YPT1, smal 99.8 1E-19 2.2E-24 148.5 11.4 115 167-293 8-126 (205)
11 COG0486 ThdF Predicted GTPase 99.8 7.9E-19 1.7E-23 161.1 18.2 117 167-293 216-336 (454)
12 COG1159 Era GTPase [General fu 99.8 1.8E-19 3.8E-24 156.8 13.2 120 168-293 6-126 (298)
13 PRK12299 obgE GTPase CgtA; Rev 99.8 2.2E-19 4.8E-24 163.1 13.8 121 169-293 159-283 (335)
14 TIGR00436 era GTP-binding prot 99.8 1.1E-18 2.3E-23 154.9 14.0 117 170-293 2-119 (270)
15 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.6E-18 9.9E-23 160.0 19.0 117 167-293 202-322 (442)
16 PRK05291 trmE tRNA modificatio 99.8 5E-18 1.1E-22 160.4 18.4 116 167-293 214-333 (449)
17 cd01898 Obg Obg subfamily. Th 99.8 8.9E-19 1.9E-23 143.9 11.6 120 170-293 2-126 (170)
18 PF01926 MMR_HSR1: 50S ribosom 99.8 3.8E-18 8.2E-23 132.0 13.6 114 170-290 1-116 (116)
19 cd04142 RRP22 RRP22 subfamily. 99.8 2.3E-18 4.9E-23 145.9 12.7 121 170-293 2-128 (198)
20 PRK12297 obgE GTPase CgtA; Rev 99.8 3.8E-18 8.2E-23 158.9 15.2 122 170-293 160-286 (424)
21 TIGR02729 Obg_CgtA Obg family 99.8 2.3E-18 5E-23 156.3 13.3 123 169-293 158-285 (329)
22 KOG0410 Predicted GTP binding 99.8 2.4E-18 5.2E-23 150.2 12.7 217 69-293 80-306 (410)
23 cd01861 Rab6 Rab6 subfamily. 99.8 4.7E-18 1E-22 138.4 12.5 113 170-293 2-117 (161)
24 PRK15494 era GTPase Era; Provi 99.8 7.4E-18 1.6E-22 153.9 15.1 121 167-293 51-172 (339)
25 PRK12296 obgE GTPase CgtA; Rev 99.8 6.1E-18 1.3E-22 159.6 14.4 123 169-293 160-296 (500)
26 PRK12298 obgE GTPase CgtA; Rev 99.8 6.9E-18 1.5E-22 156.2 13.5 122 170-293 161-287 (390)
27 KOG0087 GTPase Rab11/YPT3, sma 99.8 2.2E-18 4.7E-23 142.1 8.6 115 167-293 13-131 (222)
28 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.2E-17 2.6E-22 137.7 13.1 116 168-293 2-121 (170)
29 PRK03003 GTP-binding protein D 99.8 1.6E-17 3.4E-22 158.4 15.4 121 167-293 37-158 (472)
30 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.2E-17 2.5E-22 136.9 12.5 114 169-293 3-119 (166)
31 cd04121 Rab40 Rab40 subfamily. 99.8 1.4E-17 3E-22 140.0 13.1 115 168-293 6-122 (189)
32 cd04120 Rab12 Rab12 subfamily. 99.7 1.5E-17 3.2E-22 141.3 12.8 113 170-293 2-117 (202)
33 cd01864 Rab19 Rab19 subfamily. 99.7 2E-17 4.3E-22 135.6 12.7 115 168-293 3-120 (165)
34 cd01881 Obg_like The Obg-like 99.7 1.1E-17 2.3E-22 138.0 11.2 119 173-293 1-132 (176)
35 cd04109 Rab28 Rab28 subfamily. 99.7 1.7E-17 3.7E-22 142.2 12.6 113 170-293 2-121 (215)
36 cd04124 RabL2 RabL2 subfamily. 99.7 2.1E-17 4.5E-22 135.2 12.5 113 170-293 2-116 (161)
37 KOG0078 GTP-binding protein SE 99.7 1.5E-17 3.3E-22 137.6 11.5 116 167-293 11-129 (207)
38 cd01868 Rab11_like Rab11-like. 99.7 2.3E-17 5E-22 135.0 12.6 115 168-293 3-120 (165)
39 cd01879 FeoB Ferrous iron tran 99.7 2.2E-17 4.8E-22 133.7 12.4 112 173-293 1-113 (158)
40 cd01865 Rab3 Rab3 subfamily. 99.7 2.9E-17 6.2E-22 134.7 12.7 114 169-293 2-118 (165)
41 cd04119 RJL RJL (RabJ-Like) su 99.7 2.7E-17 5.8E-22 134.4 12.4 113 170-293 2-122 (168)
42 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.2E-17 1.1E-21 131.0 13.9 117 169-293 2-119 (157)
43 cd01894 EngA1 EngA1 subfamily. 99.7 4.2E-17 9.1E-22 131.7 13.3 116 172-293 1-117 (157)
44 cd04136 Rap_like Rap-like subf 99.7 2.7E-17 5.8E-22 134.0 11.8 113 169-293 2-118 (163)
45 cd01866 Rab2 Rab2 subfamily. 99.7 4.1E-17 8.8E-22 134.3 12.9 115 168-293 4-121 (168)
46 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 2.5E-17 5.4E-22 139.7 11.9 114 169-293 1-122 (201)
47 cd04131 Rnd Rnd subfamily. Th 99.7 3.1E-17 6.6E-22 136.7 12.1 113 169-293 2-117 (178)
48 cd01867 Rab8_Rab10_Rab13_like 99.7 3.9E-17 8.4E-22 134.2 12.5 115 168-293 3-120 (167)
49 smart00175 RAB Rab subfamily o 99.7 4.4E-17 9.6E-22 132.7 12.8 113 170-293 2-117 (164)
50 cd04106 Rab23_lke Rab23-like s 99.7 4.1E-17 8.8E-22 132.9 12.4 113 170-293 2-118 (162)
51 KOG1489 Predicted GTP-binding 99.7 1.2E-17 2.7E-22 145.6 9.6 121 169-293 197-324 (366)
52 cd01874 Cdc42 Cdc42 subfamily. 99.7 3.2E-17 7E-22 136.1 11.7 113 169-293 2-117 (175)
53 PRK03003 GTP-binding protein D 99.7 4.3E-17 9.2E-22 155.4 14.1 122 167-293 210-334 (472)
54 PRK00089 era GTPase Era; Revie 99.7 6.3E-17 1.4E-21 145.1 14.4 120 168-293 5-125 (292)
55 cd04110 Rab35 Rab35 subfamily. 99.7 4.5E-17 9.8E-22 138.0 12.7 115 168-293 6-122 (199)
56 TIGR03594 GTPase_EngA ribosome 99.7 4.7E-17 1E-21 153.5 14.1 118 170-293 1-119 (429)
57 cd04122 Rab14 Rab14 subfamily. 99.7 5.6E-17 1.2E-21 133.0 12.7 113 169-293 3-119 (166)
58 cd04145 M_R_Ras_like M-Ras/R-R 99.7 4.9E-17 1.1E-21 132.6 12.2 113 169-293 3-119 (164)
59 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 4.8E-17 1E-21 135.9 12.3 115 167-293 4-121 (182)
60 PRK00093 GTP-binding protein D 99.7 7E-17 1.5E-21 152.6 14.8 119 169-293 2-121 (435)
61 KOG0079 GTP-binding protein H- 99.7 2.1E-17 4.5E-22 128.7 9.1 113 169-293 9-124 (198)
62 cd01895 EngA2 EngA2 subfamily. 99.7 1.1E-16 2.3E-21 131.1 14.0 119 168-293 2-125 (174)
63 cd04113 Rab4 Rab4 subfamily. 99.7 7.4E-17 1.6E-21 131.4 12.4 113 170-293 2-117 (161)
64 cd04127 Rab27A Rab27a subfamil 99.7 7.9E-17 1.7E-21 133.8 12.7 115 168-293 4-132 (180)
65 cd04175 Rap1 Rap1 subgroup. T 99.7 6.1E-17 1.3E-21 132.4 11.8 113 169-293 2-118 (164)
66 cd04171 SelB SelB subfamily. 99.7 1.3E-16 2.8E-21 129.9 13.7 111 170-293 2-116 (164)
67 cd04146 RERG_RasL11_like RERG/ 99.7 2.3E-17 5.1E-22 135.1 9.2 113 170-293 1-118 (165)
68 cd04138 H_N_K_Ras_like H-Ras/N 99.7 7.3E-17 1.6E-21 131.0 12.0 113 169-293 2-118 (162)
69 KOG0092 GTPase Rab5/YPT51 and 99.7 1.7E-17 3.8E-22 135.0 7.9 115 167-293 4-122 (200)
70 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1E-16 2.2E-21 138.7 13.2 115 167-293 12-129 (232)
71 cd04157 Arl6 Arl6 subfamily. 99.7 7.9E-17 1.7E-21 131.1 11.8 112 170-293 1-116 (162)
72 cd04133 Rop_like Rop subfamily 99.7 6.6E-17 1.4E-21 134.4 11.4 114 169-293 2-117 (176)
73 PLN03071 GTP-binding nuclear p 99.7 6.9E-17 1.5E-21 138.9 11.9 117 166-293 11-129 (219)
74 cd04176 Rap2 Rap2 subgroup. T 99.7 8E-17 1.7E-21 131.5 11.7 113 169-293 2-118 (163)
75 cd04117 Rab15 Rab15 subfamily. 99.7 1.2E-16 2.6E-21 130.7 12.7 113 170-293 2-117 (161)
76 cd04144 Ras2 Ras2 subfamily. 99.7 6.3E-17 1.4E-21 136.0 11.2 112 170-293 1-118 (190)
77 cd04112 Rab26 Rab26 subfamily. 99.7 1E-16 2.3E-21 134.8 12.5 113 170-293 2-118 (191)
78 cd00877 Ran Ran (Ras-related n 99.7 8.1E-17 1.8E-21 132.4 11.4 112 169-293 1-116 (166)
79 smart00174 RHO Rho (Ras homolo 99.7 7.5E-17 1.6E-21 133.1 11.2 112 171-293 1-114 (174)
80 PF08477 Miro: Miro-like prote 99.7 2.4E-17 5.1E-22 127.7 7.7 114 170-292 1-119 (119)
81 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.3E-16 2.9E-21 131.7 12.6 113 170-293 2-118 (170)
82 cd04158 ARD1 ARD1 subfamily. 99.7 1E-16 2.2E-21 132.2 11.8 110 170-293 1-112 (169)
83 cd04149 Arf6 Arf6 subfamily. 99.7 1.4E-16 3.1E-21 131.3 12.7 113 167-293 8-122 (168)
84 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 8.6E-17 1.9E-21 132.1 11.3 110 171-293 2-111 (164)
85 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 8.5E-17 1.8E-21 131.1 11.0 116 167-293 21-140 (221)
86 cd01875 RhoG RhoG subfamily. 99.7 1.3E-16 2.9E-21 134.2 12.6 114 168-293 3-119 (191)
87 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 2E-16 4.3E-21 129.5 13.2 111 169-293 1-114 (168)
88 cd04118 Rab24 Rab24 subfamily. 99.7 1.2E-16 2.6E-21 134.4 12.0 113 170-293 2-117 (193)
89 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.4E-16 3E-21 137.0 12.5 113 169-293 2-117 (222)
90 PTZ00369 Ras-like protein; Pro 99.7 1.4E-16 3E-21 133.8 12.1 115 167-293 4-122 (189)
91 cd04132 Rho4_like Rho4-like su 99.7 1.6E-16 3.4E-21 132.9 12.3 113 170-293 2-117 (187)
92 cd04102 RabL3 RabL3 (Rab-like3 99.7 1.6E-16 3.5E-21 134.7 12.5 113 170-293 2-141 (202)
93 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.9E-16 4.2E-21 130.3 12.6 110 170-293 1-112 (167)
94 smart00173 RAS Ras subfamily o 99.7 1.5E-16 3.4E-21 129.8 11.8 112 170-293 2-117 (164)
95 KOG0098 GTPase Rab2, small G p 99.7 1.7E-16 3.6E-21 128.4 11.5 114 167-293 5-123 (216)
96 cd01871 Rac1_like Rac1-like su 99.7 1.4E-16 3.1E-21 132.1 11.4 114 169-293 2-117 (174)
97 cd00154 Rab Rab family. Rab G 99.7 2.6E-16 5.6E-21 126.7 12.7 113 170-293 2-117 (159)
98 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.6E-16 3.5E-21 130.1 11.5 113 170-293 1-119 (167)
99 cd04163 Era Era subfamily. Er 99.7 5.1E-16 1.1E-20 126.0 14.4 120 168-293 3-123 (168)
100 cd01860 Rab5_related Rab5-rela 99.7 2.8E-16 6.2E-21 128.0 12.9 114 169-293 2-118 (163)
101 cd01893 Miro1 Miro1 subfamily. 99.7 1.5E-16 3.4E-21 130.6 11.4 112 170-293 2-115 (166)
102 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.6E-16 5.6E-21 130.3 12.6 113 169-293 3-119 (172)
103 cd04134 Rho3 Rho3 subfamily. 99.7 1.2E-16 2.5E-21 134.4 10.6 113 170-293 2-116 (189)
104 cd01862 Rab7 Rab7 subfamily. 99.7 2.9E-16 6.2E-21 129.0 12.8 113 170-293 2-121 (172)
105 cd04116 Rab9 Rab9 subfamily. 99.7 3.3E-16 7.1E-21 128.8 13.1 116 167-293 4-126 (170)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.4E-16 5.2E-21 128.7 12.2 110 170-293 2-113 (159)
107 cd04123 Rab21 Rab21 subfamily. 99.7 3E-16 6.5E-21 127.3 12.6 113 170-293 2-117 (162)
108 cd04125 RabA_like RabA-like su 99.7 2.9E-16 6.2E-21 131.6 12.9 114 169-293 1-117 (188)
109 cd04101 RabL4 RabL4 (Rab-like4 99.7 3.7E-16 8E-21 127.6 13.1 112 170-293 2-119 (164)
110 cd01863 Rab18 Rab18 subfamily. 99.7 2.6E-16 5.7E-21 128.1 12.2 113 170-293 2-118 (161)
111 PLN03110 Rab GTPase; Provision 99.7 3.2E-16 6.9E-21 134.5 13.0 115 168-293 12-129 (216)
112 cd04140 ARHI_like ARHI subfami 99.7 2.6E-16 5.7E-21 129.0 12.0 115 169-293 2-120 (165)
113 cd04114 Rab30 Rab30 subfamily. 99.7 3.4E-16 7.4E-21 128.4 12.6 115 168-293 7-124 (169)
114 COG1160 Predicted GTPases [Gen 99.7 1E-16 2.2E-21 146.9 10.3 120 167-293 177-301 (444)
115 COG0536 Obg Predicted GTPase [ 99.7 1.6E-16 3.6E-21 140.2 11.1 120 170-293 161-287 (369)
116 smart00177 ARF ARF-like small 99.7 3.1E-16 6.6E-21 130.2 12.1 112 168-293 13-126 (175)
117 PRK09518 bifunctional cytidyla 99.7 3.1E-16 6.8E-21 156.1 14.4 122 167-293 449-573 (712)
118 PRK09518 bifunctional cytidyla 99.7 5.9E-16 1.3E-20 154.2 16.3 121 167-293 274-395 (712)
119 cd04128 Spg1 Spg1p. Spg1p (se 99.7 3.5E-16 7.6E-21 130.7 12.3 112 170-293 2-116 (182)
120 cd01896 DRG The developmentall 99.7 5E-16 1.1E-20 134.7 13.7 89 170-260 2-90 (233)
121 cd04130 Wrch_1 Wrch-1 subfamil 99.7 1.9E-16 4.2E-21 130.8 10.6 113 170-293 2-116 (173)
122 smart00178 SAR Sar1p-like memb 99.7 3.9E-16 8.4E-21 130.6 12.4 113 167-293 16-130 (184)
123 TIGR03594 GTPase_EngA ribosome 99.7 5.3E-16 1.1E-20 146.4 14.7 120 167-293 171-295 (429)
124 PLN00223 ADP-ribosylation fact 99.7 5.4E-16 1.2E-20 129.5 12.8 113 167-293 16-130 (181)
125 PRK04213 GTP-binding protein; 99.7 6.7E-16 1.5E-20 130.7 13.5 121 167-293 8-142 (201)
126 PRK00093 GTP-binding protein D 99.7 7.3E-16 1.6E-20 145.7 15.1 120 167-293 172-296 (435)
127 KOG0095 GTPase Rab30, small G 99.7 4.3E-16 9.4E-21 121.6 11.0 114 168-293 7-124 (213)
128 cd00157 Rho Rho (Ras homology) 99.7 3.2E-16 7E-21 128.6 11.1 113 170-293 2-116 (171)
129 cd01892 Miro2 Miro2 subfamily. 99.7 3.5E-16 7.6E-21 129.1 11.3 115 167-293 3-120 (169)
130 cd04154 Arl2 Arl2 subfamily. 99.7 5.9E-16 1.3E-20 128.0 12.5 113 167-293 13-127 (173)
131 KOG1191 Mitochondrial GTPase [ 99.7 1.2E-15 2.6E-20 140.1 15.3 123 167-293 267-401 (531)
132 cd04148 RGK RGK subfamily. Th 99.7 3.7E-16 8E-21 134.6 11.2 111 170-293 2-118 (221)
133 cd04111 Rab39 Rab39 subfamily. 99.7 5E-16 1.1E-20 132.8 11.9 114 169-293 3-121 (211)
134 cd04151 Arl1 Arl1 subfamily. 99.7 6E-16 1.3E-20 125.9 11.7 111 170-293 1-112 (158)
135 cd04135 Tc10 TC10 subfamily. 99.7 4.4E-16 9.5E-21 128.5 11.0 113 170-293 2-116 (174)
136 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 9.6E-16 2.1E-20 127.0 12.9 112 168-293 15-128 (174)
137 TIGR03598 GTPase_YsxC ribosome 99.7 1.9E-15 4.2E-20 125.8 14.4 119 167-293 17-141 (179)
138 cd00879 Sar1 Sar1 subfamily. 99.7 1E-15 2.2E-20 128.3 12.9 113 167-293 18-132 (190)
139 cd04147 Ras_dva Ras-dva subfam 99.7 4.6E-16 1E-20 131.6 10.8 112 170-293 1-116 (198)
140 KOG0093 GTPase Rab3, small G p 99.7 5.2E-16 1.1E-20 120.8 9.9 114 168-293 21-138 (193)
141 cd04126 Rab20 Rab20 subfamily. 99.7 7.4E-16 1.6E-20 132.4 12.0 110 170-293 2-112 (220)
142 cd00878 Arf_Arl Arf (ADP-ribos 99.7 9.2E-16 2E-20 124.6 11.8 110 170-293 1-112 (158)
143 cd00876 Ras Ras family. The R 99.7 9E-16 2E-20 124.3 11.6 112 170-293 1-116 (160)
144 PRK09554 feoB ferrous iron tra 99.7 9E-16 1.9E-20 152.8 13.9 119 168-293 3-124 (772)
145 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1E-15 2.2E-20 128.0 12.1 114 168-293 3-121 (183)
146 cd04143 Rhes_like Rhes_like su 99.7 8.7E-16 1.9E-20 134.3 12.0 112 170-293 2-125 (247)
147 PLN00023 GTP-binding protein; 99.7 9.1E-16 2E-20 137.1 12.1 116 167-293 20-163 (334)
148 PTZ00133 ADP-ribosylation fact 99.7 1.3E-15 2.7E-20 127.4 12.2 112 168-293 17-130 (182)
149 cd04103 Centaurin_gamma Centau 99.7 7.1E-16 1.5E-20 125.9 10.5 106 170-293 2-111 (158)
150 cd01870 RhoA_like RhoA-like su 99.7 6.8E-16 1.5E-20 127.4 10.5 114 169-293 2-117 (175)
151 cd04139 RalA_RalB RalA/RalB su 99.7 1.3E-15 2.8E-20 124.0 11.9 113 169-293 1-117 (164)
152 cd04177 RSR1 RSR1 subgroup. R 99.7 1E-15 2.2E-20 125.9 11.4 113 169-293 2-118 (168)
153 KOG0394 Ras-related GTPase [Ge 99.7 3.2E-16 6.9E-21 126.6 8.1 115 167-293 8-130 (210)
154 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.7E-15 3.7E-20 128.0 12.7 118 170-292 2-127 (196)
155 KOG1423 Ras-like GTPase ERA [C 99.7 9.6E-16 2.1E-20 133.2 11.3 123 167-293 71-197 (379)
156 KOG0080 GTPase Rab18, small G 99.7 4.5E-16 9.8E-21 122.9 8.5 115 167-293 10-129 (209)
157 PLN03108 Rab family protein; P 99.6 1.9E-15 4.2E-20 129.1 13.0 115 168-293 6-123 (210)
158 COG0370 FeoB Fe2+ transport sy 99.6 1.8E-15 4E-20 144.5 14.0 116 169-293 4-120 (653)
159 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.9E-15 4E-20 122.9 11.7 110 170-293 1-113 (160)
160 cd04159 Arl10_like Arl10-like 99.6 2.1E-15 4.5E-20 121.5 11.5 110 171-293 2-113 (159)
161 smart00176 RAN Ran (Ras-relate 99.6 2.3E-15 5E-20 127.6 11.9 109 174-293 1-111 (200)
162 COG0218 Predicted GTPase [Gene 99.6 4.9E-15 1.1E-19 122.6 13.1 119 167-293 23-147 (200)
163 TIGR00991 3a0901s02IAP34 GTP-b 99.6 8.5E-15 1.8E-19 130.1 15.2 133 157-293 27-165 (313)
164 cd00881 GTP_translation_factor 99.6 5.7E-15 1.2E-19 123.0 13.4 110 170-293 1-126 (189)
165 TIGR00231 small_GTP small GTP- 99.6 5.7E-15 1.2E-19 118.3 12.9 115 169-293 2-120 (161)
166 cd01889 SelB_euk SelB subfamil 99.6 4.2E-15 9.1E-20 125.1 12.3 110 170-293 2-132 (192)
167 cd01891 TypA_BipA TypA (tyrosi 99.6 8.4E-15 1.8E-19 123.5 13.6 111 169-293 3-129 (194)
168 PF00071 Ras: Ras family; Int 99.6 2.1E-15 4.6E-20 122.8 9.6 113 170-293 1-116 (162)
169 PLN03118 Rab family protein; P 99.6 4.4E-15 9.5E-20 126.9 11.9 116 167-293 13-132 (211)
170 cd01890 LepA LepA subfamily. 99.6 8E-15 1.7E-19 121.5 13.0 111 169-293 1-131 (179)
171 cd01873 RhoBTB RhoBTB subfamil 99.6 2.5E-15 5.4E-20 126.9 10.1 114 168-293 2-132 (195)
172 cd00880 Era_like Era (E. coli 99.6 9.7E-15 2.1E-19 117.0 13.1 114 173-293 1-116 (163)
173 cd01853 Toc34_like Toc34-like 99.6 1.4E-14 3.1E-19 126.5 15.0 126 166-293 29-161 (249)
174 cd04137 RheB Rheb (Ras Homolog 99.6 5.9E-15 1.3E-19 122.5 11.6 113 169-293 2-118 (180)
175 KOG0086 GTPase Rab4, small G p 99.6 3.4E-15 7.3E-20 117.0 8.9 114 168-293 9-126 (214)
176 cd04105 SR_beta Signal recogni 99.6 1.4E-14 3E-19 123.2 12.8 111 169-293 1-121 (203)
177 cd04166 CysN_ATPS CysN_ATPS su 99.6 9.2E-15 2E-19 124.7 11.4 111 170-293 1-142 (208)
178 TIGR02528 EutP ethanolamine ut 99.6 9.3E-15 2E-19 116.6 10.7 99 170-293 2-100 (142)
179 cd04155 Arl3 Arl3 subfamily. 99.6 1.9E-14 4.2E-19 118.5 12.7 113 167-293 13-127 (173)
180 TIGR00437 feoB ferrous iron tr 99.6 1.4E-14 2.9E-19 141.1 13.2 110 175-293 1-111 (591)
181 PRK00454 engB GTP-binding prot 99.6 5.2E-14 1.1E-18 118.4 14.8 119 167-293 23-147 (196)
182 cd04129 Rho2 Rho2 subfamily. 99.6 2E-14 4.4E-19 120.5 11.4 113 170-293 3-117 (187)
183 COG1163 DRG Predicted GTPase [ 99.6 1.7E-14 3.7E-19 126.6 11.0 94 166-261 61-154 (365)
184 TIGR00487 IF-2 translation ini 99.6 3.1E-14 6.8E-19 138.1 13.9 114 166-293 85-199 (587)
185 PRK05306 infB translation init 99.6 2.9E-14 6.2E-19 141.7 13.8 115 165-293 287-401 (787)
186 PTZ00132 GTP-binding nuclear p 99.5 5.5E-14 1.2E-18 120.4 12.4 114 167-293 8-125 (215)
187 cd01886 EF-G Elongation factor 99.5 9.4E-14 2E-18 122.9 13.4 110 170-293 1-128 (270)
188 COG3596 Predicted GTPase [Gene 99.5 4.5E-14 9.8E-19 121.6 10.8 124 165-293 36-160 (296)
189 PF00009 GTP_EFTU: Elongation 99.5 3.5E-14 7.5E-19 119.2 9.8 112 168-293 3-134 (188)
190 cd04169 RF3 RF3 subfamily. Pe 99.5 1.5E-13 3.4E-18 121.4 14.2 111 169-293 3-135 (267)
191 cd04168 TetM_like Tet(M)-like 99.5 9.5E-14 2.1E-18 120.7 12.6 110 170-293 1-128 (237)
192 cd01884 EF_Tu EF-Tu subfamily. 99.5 1.1E-13 2.4E-18 116.8 12.5 111 169-293 3-130 (195)
193 PRK15467 ethanolamine utilizat 99.5 4.5E-14 9.8E-19 115.3 9.7 101 170-293 3-103 (158)
194 PF06858 NOG1: Nucleolar GTP-b 99.5 4.7E-14 1E-18 92.8 7.8 58 235-292 1-58 (58)
195 COG1100 GTPase SAR1 and relate 99.5 1.6E-13 3.5E-18 117.4 12.8 114 169-293 6-123 (219)
196 PF00025 Arf: ADP-ribosylation 99.5 4.4E-14 9.5E-19 117.3 8.9 113 167-293 13-127 (175)
197 KOG0073 GTP-binding ADP-ribosy 99.5 2.9E-13 6.2E-18 107.5 12.0 112 168-293 16-129 (185)
198 CHL00189 infB translation init 99.5 2.1E-13 4.6E-18 134.4 13.8 114 166-293 242-359 (742)
199 cd04170 EF-G_bact Elongation f 99.5 2.6E-13 5.7E-18 120.2 13.2 110 170-293 1-128 (268)
200 cd01876 YihA_EngB The YihA (En 99.5 2.6E-13 5.7E-18 110.3 12.1 116 170-293 1-122 (170)
201 cd01850 CDC_Septin CDC/Septin. 99.5 3.7E-13 8E-18 119.6 13.9 122 167-293 3-155 (276)
202 TIGR00475 selB selenocysteine- 99.5 3.2E-13 6.9E-18 131.4 13.8 110 170-293 2-115 (581)
203 cd00882 Ras_like_GTPase Ras-li 99.5 2.1E-13 4.6E-18 107.8 10.4 112 173-293 1-114 (157)
204 PTZ00258 GTP-binding protein; 99.5 3.8E-13 8.2E-18 123.8 13.3 90 167-258 20-126 (390)
205 TIGR00491 aIF-2 translation in 99.5 3.8E-13 8.3E-18 130.4 13.9 113 167-293 3-133 (590)
206 cd01900 YchF YchF subfamily. 99.5 3.7E-13 7.9E-18 118.8 12.1 87 171-259 1-104 (274)
207 cd01883 EF1_alpha Eukaryotic e 99.5 5.6E-13 1.2E-17 114.6 12.8 114 170-293 1-149 (219)
208 cd04104 p47_IIGP_like p47 (47- 99.5 2.9E-13 6.2E-18 114.5 10.8 112 169-293 2-119 (197)
209 cd04167 Snu114p Snu114p subfam 99.5 4.1E-13 8.9E-18 114.9 11.7 110 170-293 2-135 (213)
210 PRK12317 elongation factor 1-a 99.5 3E-13 6.6E-18 127.5 11.8 116 167-293 5-151 (425)
211 KOG0088 GTPase Rab21, small G 99.5 2.5E-14 5.5E-19 112.8 3.2 112 167-293 12-130 (218)
212 KOG0097 GTPase Rab14, small G 99.5 2.9E-13 6.3E-18 104.9 8.9 114 167-293 10-128 (215)
213 KOG0395 Ras-related GTPase [Ge 99.5 2.6E-13 5.7E-18 114.4 9.3 114 168-293 3-120 (196)
214 PRK09601 GTP-binding protein Y 99.5 9.2E-13 2E-17 120.0 13.3 89 169-259 3-108 (364)
215 cd01885 EF2 EF2 (for archaea a 99.5 8.9E-13 1.9E-17 113.3 12.4 111 169-293 1-137 (222)
216 PF04548 AIG1: AIG1 family; I 99.5 5.7E-13 1.2E-17 114.0 11.1 119 170-292 2-127 (212)
217 cd01899 Ygr210 Ygr210 subfamil 99.4 1.1E-12 2.5E-17 118.3 12.8 87 171-259 1-111 (318)
218 PRK09602 translation-associate 99.4 1.3E-12 2.7E-17 121.5 13.0 89 169-259 2-114 (396)
219 CHL00071 tufA elongation facto 99.4 1.5E-12 3.1E-17 122.1 13.2 113 167-293 11-140 (409)
220 smart00053 DYNc Dynamin, GTPas 99.4 4.2E-12 9.1E-17 110.0 15.0 123 167-293 25-204 (240)
221 TIGR00484 EF-G translation elo 99.4 1.7E-12 3.7E-17 129.2 13.6 113 167-293 9-139 (689)
222 cd01888 eIF2_gamma eIF2-gamma 99.4 2.9E-12 6.2E-17 108.9 12.8 111 170-293 2-149 (203)
223 KOG0091 GTPase Rab39, small G 99.4 5.2E-13 1.1E-17 106.0 7.0 114 168-293 8-128 (213)
224 PLN03127 Elongation factor Tu; 99.4 2.7E-12 5.8E-17 121.2 13.0 113 167-293 60-189 (447)
225 PF09439 SRPRB: Signal recogni 99.4 2.7E-13 5.9E-18 112.0 5.5 114 168-293 3-124 (181)
226 PRK04004 translation initiatio 99.4 3.7E-12 8E-17 123.9 14.1 114 166-293 4-135 (586)
227 PRK10218 GTP-binding protein; 99.4 3.4E-12 7.4E-17 124.2 13.4 113 167-293 4-132 (607)
228 PRK12735 elongation factor Tu; 99.4 3.7E-12 8.1E-17 118.9 13.1 113 167-293 11-140 (396)
229 TIGR01393 lepA GTP-binding pro 99.4 4.2E-12 9.1E-17 123.8 13.9 112 168-293 3-134 (595)
230 TIGR01394 TypA_BipA GTP-bindin 99.4 4E-12 8.7E-17 123.7 13.5 111 169-293 2-128 (594)
231 TIGR00483 EF-1_alpha translati 99.4 3.6E-12 7.9E-17 120.2 12.8 117 167-293 6-153 (426)
232 PRK12739 elongation factor G; 99.4 3.7E-12 8.1E-17 126.7 13.5 113 167-293 7-137 (691)
233 cd04165 GTPBP1_like GTPBP1-lik 99.4 5.5E-12 1.2E-16 108.8 12.7 111 170-293 1-150 (224)
234 PF10662 PduV-EutP: Ethanolami 99.4 2.6E-12 5.6E-17 101.9 9.7 100 169-293 2-101 (143)
235 PRK12736 elongation factor Tu; 99.4 4.8E-12 1E-16 118.1 13.1 113 167-293 11-140 (394)
236 PRK00007 elongation factor G; 99.4 5.9E-12 1.3E-16 125.3 14.0 113 167-293 9-139 (693)
237 COG2229 Predicted GTPase [Gene 99.4 8.8E-12 1.9E-16 101.3 12.4 113 168-293 10-133 (187)
238 PLN03126 Elongation factor Tu; 99.4 7.4E-12 1.6E-16 118.9 13.8 113 167-293 80-209 (478)
239 KOG0393 Ras-related small GTPa 99.4 6.5E-13 1.4E-17 110.4 5.7 114 168-293 4-121 (198)
240 PRK00741 prfC peptide chain re 99.4 6.9E-12 1.5E-16 120.6 13.3 113 167-293 9-143 (526)
241 KOG0070 GTP-binding ADP-ribosy 99.4 1.1E-12 2.4E-17 106.7 6.6 114 167-293 16-130 (181)
242 PRK09866 hypothetical protein; 99.4 1.9E-11 4.1E-16 117.0 15.7 71 216-293 231-301 (741)
243 TIGR00503 prfC peptide chain r 99.4 9.9E-12 2.1E-16 119.5 13.8 113 167-293 10-144 (527)
244 PRK05124 cysN sulfate adenylyl 99.3 1.4E-11 3E-16 117.3 13.8 114 167-293 26-172 (474)
245 KOG0081 GTPase Rab27, small G 99.3 4.5E-13 9.7E-18 105.9 2.7 112 170-293 11-136 (219)
246 PRK13351 elongation factor G; 99.3 1.2E-11 2.5E-16 123.4 13.3 113 167-293 7-137 (687)
247 PF00350 Dynamin_N: Dynamin fa 99.3 8.8E-12 1.9E-16 102.3 10.5 112 171-291 1-168 (168)
248 PRK00049 elongation factor Tu; 99.3 1.1E-11 2.4E-16 115.6 12.4 113 167-293 11-140 (396)
249 PRK10512 selenocysteinyl-tRNA- 99.3 2E-11 4.3E-16 119.4 14.1 110 170-293 2-116 (614)
250 PRK05506 bifunctional sulfate 99.3 1E-11 2.2E-16 122.5 12.2 114 167-293 23-169 (632)
251 PRK05433 GTP-binding protein L 99.3 2E-11 4.4E-16 119.1 14.0 113 167-293 6-138 (600)
252 TIGR00485 EF-Tu translation el 99.3 1.5E-11 3.3E-16 114.7 12.4 113 167-293 11-140 (394)
253 KOG0075 GTP-binding ADP-ribosy 99.3 3.5E-12 7.5E-17 99.6 6.6 113 168-293 20-134 (186)
254 TIGR02034 CysN sulfate adenyly 99.3 1.8E-11 3.8E-16 114.7 12.4 111 170-293 2-145 (406)
255 TIGR00993 3a0901s04IAP86 chlor 99.3 5.2E-11 1.1E-15 114.4 15.0 123 168-293 118-248 (763)
256 KOG0083 GTPase Rab26/Rab37, sm 99.3 7.2E-13 1.6E-17 101.7 1.5 110 172-293 1-115 (192)
257 TIGR03680 eif2g_arch translati 99.3 2.8E-11 6.1E-16 113.4 12.5 113 168-293 4-146 (406)
258 KOG4252 GTP-binding protein [S 99.3 2.1E-12 4.5E-17 104.1 3.0 115 167-293 19-136 (246)
259 KOG3883 Ras family small GTPas 99.3 5.2E-11 1.1E-15 93.7 9.9 118 167-293 8-130 (198)
260 PRK04000 translation initiatio 99.2 5.9E-11 1.3E-15 111.2 12.2 114 167-293 8-151 (411)
261 COG0012 Predicted GTPase, prob 99.2 2E-11 4.4E-16 110.0 8.4 89 169-259 3-109 (372)
262 KOG1707 Predicted Ras related/ 99.2 3.3E-11 7.2E-16 113.0 9.2 114 167-293 8-127 (625)
263 PF05049 IIGP: Interferon-indu 99.2 3.6E-11 7.8E-16 109.7 9.0 113 168-292 35-152 (376)
264 PTZ00416 elongation factor 2; 99.2 1.1E-10 2.4E-15 118.1 13.4 113 167-293 18-156 (836)
265 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 8.5E-11 1.8E-15 101.3 10.4 120 170-293 1-123 (232)
266 KOG1486 GTP-binding protein DR 99.2 2.6E-11 5.7E-16 103.1 6.9 92 167-260 61-152 (364)
267 TIGR00490 aEF-2 translation el 99.2 8.9E-11 1.9E-15 117.3 11.3 113 167-293 18-150 (720)
268 TIGR02836 spore_IV_A stage IV 99.2 1.9E-10 4.1E-15 105.2 11.9 123 167-292 16-191 (492)
269 PTZ00141 elongation factor 1- 99.2 2.4E-10 5.1E-15 108.2 13.1 112 167-292 6-156 (446)
270 KOG0071 GTP-binding ADP-ribosy 99.2 1.6E-10 3.4E-15 89.7 9.6 113 168-293 17-130 (180)
271 cd01882 BMS1 Bms1. Bms1 is an 99.2 2.4E-10 5.3E-15 98.6 11.9 105 167-293 38-145 (225)
272 PLN00116 translation elongatio 99.2 2.2E-10 4.8E-15 116.2 13.2 113 167-293 18-162 (843)
273 PF00735 Septin: Septin; Inte 99.2 3E-10 6.5E-15 101.0 12.4 121 168-293 4-154 (281)
274 KOG0074 GTP-binding ADP-ribosy 99.2 1.1E-10 2.3E-15 90.8 7.9 114 166-293 15-131 (185)
275 PRK12740 elongation factor G; 99.1 4.1E-10 8.9E-15 112.0 12.7 106 174-293 1-124 (668)
276 KOG0090 Signal recognition par 99.1 3E-10 6.6E-15 94.4 9.7 113 169-293 39-157 (238)
277 KOG0076 GTP-binding ADP-ribosy 99.1 1.2E-10 2.6E-15 93.6 6.3 116 167-293 16-138 (197)
278 COG0532 InfB Translation initi 99.1 8.6E-10 1.9E-14 103.3 12.8 113 166-293 3-119 (509)
279 KOG1424 Predicted GTP-binding 99.1 8.5E-11 1.8E-15 108.9 5.1 169 57-229 163-373 (562)
280 cd04178 Nucleostemin_like Nucl 99.1 2.3E-10 5E-15 94.6 6.7 56 167-225 116-172 (172)
281 PRK07560 elongation factor EF- 99.1 7.8E-10 1.7E-14 110.8 11.8 113 167-293 19-151 (731)
282 TIGR00092 GTP-binding protein 99.1 1.1E-09 2.4E-14 100.1 11.4 89 169-259 3-109 (368)
283 KOG0077 Vesicle coat complex C 99.1 4.5E-10 9.8E-15 89.7 7.7 112 168-293 20-133 (193)
284 COG1161 Predicted GTPases [Gen 99.0 9E-10 1.9E-14 99.9 9.7 136 81-230 54-192 (322)
285 KOG1145 Mitochondrial translat 99.0 1.9E-09 4.2E-14 100.6 11.9 115 164-293 149-265 (683)
286 PLN00043 elongation factor 1-a 99.0 2.1E-09 4.6E-14 101.7 12.2 116 167-293 6-157 (447)
287 cd01858 NGP_1 NGP-1. Autoanti 99.0 4.4E-10 9.5E-15 91.5 6.5 55 168-225 102-157 (157)
288 COG0480 FusA Translation elong 99.0 2E-09 4.4E-14 105.9 12.0 113 167-293 9-140 (697)
289 KOG1491 Predicted GTP-binding 99.0 1.4E-09 3.1E-14 96.3 9.7 92 167-260 19-127 (391)
290 PRK09563 rbgA GTPase YlqF; Rev 99.0 3.3E-09 7.1E-14 94.9 11.3 61 167-230 120-181 (287)
291 cd01851 GBP Guanylate-binding 99.0 2.4E-09 5.1E-14 92.4 9.9 92 167-260 6-104 (224)
292 PRK10416 signal recognition pa 99.0 6.3E-08 1.4E-12 87.7 19.4 214 45-292 18-270 (318)
293 KOG1532 GTPase XAB1, interacts 99.0 1E-09 2.2E-14 94.7 7.2 75 215-293 116-193 (366)
294 TIGR03596 GTPase_YlqF ribosome 99.0 4.1E-09 8.9E-14 93.8 10.8 61 167-230 117-178 (276)
295 KOG0096 GTPase Ran/TC4/GSP1 (n 99.0 1.2E-09 2.6E-14 89.1 6.6 116 166-293 8-126 (216)
296 KOG0462 Elongation factor-type 99.0 2.8E-09 6E-14 99.6 9.6 113 167-293 59-189 (650)
297 KOG1547 Septin CDC10 and relat 99.0 1.4E-08 2.9E-13 86.2 12.5 122 166-292 44-195 (336)
298 cd01855 YqeH YqeH. YqeH is an 99.0 9.5E-10 2.1E-14 92.4 5.6 55 168-225 127-190 (190)
299 KOG2486 Predicted GTPase [Gene 99.0 9.2E-09 2E-13 89.0 11.6 119 166-293 134-260 (320)
300 COG5256 TEF1 Translation elong 98.9 3.9E-09 8.4E-14 96.1 9.3 117 168-293 7-157 (428)
301 COG4108 PrfC Peptide chain rel 98.9 8.8E-09 1.9E-13 94.1 10.9 110 169-292 13-144 (528)
302 PRK13768 GTPase; Provisional 98.9 3.8E-09 8.2E-14 92.8 8.2 77 215-293 97-174 (253)
303 KOG0072 GTP-binding ADP-ribosy 98.9 1.8E-09 4E-14 84.2 5.4 114 167-293 17-131 (182)
304 cd01849 YlqF_related_GTPase Yl 98.9 2.7E-09 5.9E-14 86.6 6.5 56 167-225 99-155 (155)
305 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.4E-09 7.4E-14 84.7 6.4 54 170-226 85-139 (141)
306 PTZ00327 eukaryotic translatio 98.9 1.7E-08 3.7E-13 95.6 11.5 114 167-293 33-183 (460)
307 COG5019 CDC3 Septin family pro 98.9 4.4E-08 9.5E-13 88.1 13.2 123 166-293 21-174 (373)
308 cd01856 YlqF YlqF. Proteins o 98.9 5.4E-09 1.2E-13 86.3 7.0 56 167-225 114-170 (171)
309 KOG2655 Septin family protein 98.9 3.9E-08 8.4E-13 89.0 12.8 123 166-293 19-170 (366)
310 COG1217 TypA Predicted membran 98.9 1.4E-08 3.1E-13 93.4 10.1 113 167-293 4-132 (603)
311 PTZ00099 rab6; Provisional 98.9 1.6E-08 3.4E-13 84.1 9.5 75 208-293 20-97 (176)
312 TIGR01425 SRP54_euk signal rec 98.8 3.2E-07 6.9E-12 85.7 18.3 114 168-292 100-250 (429)
313 KOG1954 Endocytosis/signaling 98.8 2.9E-08 6.2E-13 89.0 10.4 123 167-293 57-223 (532)
314 KOG2423 Nucleolar GTPase [Gene 98.8 3.7E-09 7.9E-14 95.3 3.8 157 54-229 199-366 (572)
315 cd01859 MJ1464 MJ1464. This f 98.8 1.9E-08 4E-13 81.7 7.3 56 167-225 100-156 (156)
316 TIGR00750 lao LAO/AO transport 98.8 9E-08 2E-12 86.2 11.8 52 133-190 5-56 (300)
317 COG0552 FtsY Signal recognitio 98.8 3E-07 6.4E-12 82.1 14.5 219 48-292 38-295 (340)
318 COG4917 EutP Ethanolamine util 98.7 2.2E-08 4.7E-13 76.5 5.9 101 169-293 2-102 (148)
319 TIGR03597 GTPase_YqeH ribosome 98.7 2.1E-08 4.6E-13 92.5 6.3 57 169-228 155-217 (360)
320 KOG0468 U5 snRNP-specific prot 98.7 1.2E-07 2.6E-12 90.5 11.4 115 165-293 125-261 (971)
321 PF03029 ATP_bind_1: Conserved 98.7 3.2E-08 7E-13 86.0 6.6 74 216-293 92-168 (238)
322 COG0481 LepA Membrane GTPase L 98.7 6.1E-08 1.3E-12 89.5 8.4 113 167-293 8-140 (603)
323 PF03193 DUF258: Protein of un 98.7 2.1E-08 4.6E-13 81.4 4.9 60 169-231 36-103 (161)
324 PRK14845 translation initiatio 98.7 1.4E-07 3E-12 96.6 11.6 101 179-293 472-590 (1049)
325 PRK09435 membrane ATPase/prote 98.7 1.6E-07 3.5E-12 85.2 10.7 24 166-189 54-77 (332)
326 KOG1673 Ras GTPases [General f 98.7 2.8E-08 6.2E-13 78.6 4.8 115 168-293 20-136 (205)
327 PRK12289 GTPase RsgA; Reviewed 98.7 4E-08 8.7E-13 90.0 6.6 58 170-230 174-239 (352)
328 PRK12288 GTPase RsgA; Reviewed 98.7 6.1E-08 1.3E-12 88.8 7.7 59 170-231 207-273 (347)
329 KOG2485 Conserved ATP/GTP bind 98.6 1.3E-07 2.8E-12 83.3 8.7 69 166-234 141-215 (335)
330 TIGR00157 ribosome small subun 98.6 6.8E-08 1.5E-12 84.4 7.0 58 170-231 122-187 (245)
331 PRK13796 GTPase YqeH; Provisio 98.6 4.2E-08 9.1E-13 90.7 6.0 56 169-227 161-222 (365)
332 KOG0458 Elongation factor 1 al 98.6 2E-07 4.3E-12 88.1 8.8 118 167-293 176-327 (603)
333 KOG3886 GTP-binding protein [S 98.5 1.3E-07 2.9E-12 79.8 5.8 116 168-293 4-128 (295)
334 COG2895 CysN GTPases - Sulfate 98.5 6E-07 1.3E-11 80.3 9.8 114 167-293 5-151 (431)
335 PF03308 ArgK: ArgK protein; 98.5 2.6E-07 5.6E-12 80.0 7.2 107 166-293 27-179 (266)
336 KOG1144 Translation initiation 98.5 4E-07 8.7E-12 87.9 9.0 112 166-292 473-603 (1064)
337 KOG1487 GTP-binding protein DR 98.5 8.5E-08 1.8E-12 82.3 3.9 92 169-262 60-151 (358)
338 COG1162 Predicted GTPases [Gen 98.5 5.1E-07 1.1E-11 80.0 8.2 58 170-230 166-231 (301)
339 TIGR03348 VI_IcmF type VI secr 98.5 8.9E-07 1.9E-11 93.1 11.5 123 170-293 113-255 (1169)
340 PRK14974 cell division protein 98.5 1.2E-06 2.5E-11 79.8 10.8 70 214-293 222-291 (336)
341 COG1703 ArgK Putative periplas 98.5 1.2E-06 2.6E-11 77.0 10.3 56 132-189 17-72 (323)
342 PRK14723 flhF flagellar biosyn 98.5 2E-05 4.3E-10 78.5 20.0 24 168-191 185-208 (767)
343 KOG2484 GTPase [General functi 98.5 1.7E-07 3.7E-12 84.9 4.5 168 57-232 135-314 (435)
344 TIGR00064 ftsY signal recognit 98.4 6.8E-06 1.5E-10 72.9 14.5 23 167-189 71-93 (272)
345 KOG4423 GTP-binding protein-li 98.4 1.5E-08 3.2E-13 82.6 -2.8 115 168-293 25-147 (229)
346 PRK00098 GTPase RsgA; Reviewed 98.4 9.4E-07 2E-11 79.5 8.2 59 169-230 165-231 (298)
347 cd03112 CobW_like The function 98.4 7.4E-07 1.6E-11 72.7 6.5 22 170-191 2-23 (158)
348 KOG0464 Elongation factor G [T 98.4 1.5E-07 3.2E-12 85.6 2.4 113 167-293 36-166 (753)
349 KOG0448 Mitofusin 1 GTPase, in 98.4 5.9E-06 1.3E-10 79.6 13.1 116 167-293 108-273 (749)
350 PRK06995 flhF flagellar biosyn 98.3 0.00017 3.7E-09 68.6 21.0 23 168-190 256-278 (484)
351 COG5192 BMS1 GTP-binding prote 98.3 1.2E-05 2.7E-10 75.9 13.0 142 125-293 27-175 (1077)
352 PRK00771 signal recognition pa 98.3 4.5E-05 9.8E-10 71.9 16.7 23 167-189 94-116 (437)
353 PRK11889 flhF flagellar biosyn 98.2 5.3E-06 1.2E-10 76.4 9.3 23 167-189 240-262 (436)
354 COG0050 TufB GTPases - transla 98.2 8E-06 1.7E-10 71.6 9.8 112 168-293 12-140 (394)
355 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.2E-06 4.7E-11 76.7 6.6 58 169-229 162-227 (287)
356 KOG0082 G-protein alpha subuni 98.2 5.3E-06 1.1E-10 75.3 8.9 83 202-293 182-274 (354)
357 KOG3859 Septins (P-loop GTPase 98.2 2.7E-06 5.9E-11 73.8 6.4 122 166-292 40-187 (406)
358 PRK12724 flagellar biosynthesi 98.2 0.00039 8.5E-09 64.9 20.5 23 168-190 223-245 (432)
359 COG3523 IcmF Type VI protein s 98.2 3E-05 6.4E-10 80.2 14.3 122 171-293 128-268 (1188)
360 PRK10867 signal recognition pa 98.2 0.00015 3.3E-09 68.2 17.5 22 168-189 100-121 (433)
361 KOG0461 Selenocysteine-specifi 98.2 1.8E-05 4E-10 70.8 10.6 112 168-293 7-134 (522)
362 KOG0467 Translation elongation 98.1 6.8E-06 1.5E-10 79.9 8.1 112 167-292 8-135 (887)
363 PF00448 SRP54: SRP54-type pro 98.1 7.7E-06 1.7E-10 69.1 7.6 21 169-189 2-22 (196)
364 KOG0447 Dynamin-like GTP bindi 98.1 0.00016 3.5E-09 68.3 16.8 124 165-293 305-491 (980)
365 PRK12723 flagellar biosynthesi 98.1 0.00015 3.3E-09 67.3 16.6 23 167-189 173-195 (388)
366 COG1419 FlhF Flagellar GTP-bin 98.1 0.00015 3.4E-09 66.7 16.3 24 168-191 203-226 (407)
367 KOG0465 Mitochondrial elongati 98.1 2.8E-06 6E-11 80.8 5.1 111 168-292 39-167 (721)
368 COG3276 SelB Selenocysteine-sp 98.1 1.4E-05 3E-10 73.7 9.3 111 170-293 2-115 (447)
369 PRK12727 flagellar biosynthesi 98.1 0.00027 5.9E-09 67.7 17.8 24 167-190 349-372 (559)
370 KOG1707 Predicted Ras related/ 98.1 2.3E-05 4.9E-10 74.4 10.4 115 165-293 422-538 (625)
371 smart00010 small_GTPase Small 98.1 7.9E-06 1.7E-10 62.8 6.2 87 170-293 2-89 (124)
372 COG5257 GCD11 Translation init 98.1 1.4E-05 3E-10 70.9 7.8 115 167-293 9-152 (415)
373 PRK14722 flhF flagellar biosyn 98.1 1.9E-05 4.1E-10 72.8 9.1 24 167-190 136-159 (374)
374 TIGR00959 ffh signal recogniti 98.1 0.00012 2.6E-09 68.9 14.2 22 168-189 99-120 (428)
375 PRK14721 flhF flagellar biosyn 98.0 0.00017 3.7E-09 67.6 14.6 25 167-191 190-214 (420)
376 TIGR00073 hypB hydrogenase acc 98.0 2E-05 4.2E-10 67.1 7.3 25 167-191 21-45 (207)
377 PRK05703 flhF flagellar biosyn 98.0 0.00056 1.2E-08 64.5 17.5 23 168-190 221-243 (424)
378 PRK12726 flagellar biosynthesi 97.9 3.6E-05 7.9E-10 70.7 8.0 23 167-189 205-227 (407)
379 cd03115 SRP The signal recogni 97.9 0.00028 6E-09 58.1 11.9 68 214-293 82-151 (173)
380 cd03114 ArgK-like The function 97.8 0.00012 2.6E-09 59.0 8.4 20 171-190 2-21 (148)
381 smart00275 G_alpha G protein a 97.8 0.00019 4E-09 65.9 10.7 84 201-293 170-263 (342)
382 COG1618 Predicted nucleotide k 97.8 0.00047 1E-08 55.6 10.8 113 167-290 4-139 (179)
383 COG0541 Ffh Signal recognition 97.8 0.001 2.3E-08 61.7 14.5 23 167-189 99-121 (451)
384 KOG0781 Signal recognition par 97.7 0.0013 2.7E-08 61.6 14.6 38 147-189 362-399 (587)
385 cd00066 G-alpha G protein alph 97.7 0.00014 2.9E-09 66.1 8.1 84 201-293 147-240 (317)
386 PRK06731 flhF flagellar biosyn 97.7 0.00014 3E-09 64.4 7.7 24 167-190 74-97 (270)
387 KOG1533 Predicted GTPase [Gene 97.7 4.9E-05 1.1E-09 64.7 4.5 20 170-189 4-23 (290)
388 COG5258 GTPBP1 GTPase [General 97.7 0.00021 4.6E-09 65.0 8.6 115 166-293 115-267 (527)
389 KOG0780 Signal recognition par 97.7 0.0018 4E-08 59.1 14.4 104 166-275 99-239 (483)
390 KOG3905 Dynein light intermedi 97.6 0.00042 9.1E-09 61.8 9.3 89 167-263 51-143 (473)
391 PRK01889 GTPase RsgA; Reviewed 97.5 0.00013 2.9E-09 67.2 5.5 58 169-229 196-261 (356)
392 cd02038 FleN-like FleN is a me 97.5 0.0013 2.8E-08 52.2 10.3 99 172-292 4-108 (139)
393 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00022 4.8E-09 59.2 5.8 21 169-189 1-21 (178)
394 KOG3887 Predicted small GTPase 97.4 0.00016 3.4E-09 61.9 4.3 115 168-292 27-146 (347)
395 KOG1534 Putative transcription 97.4 9.3E-05 2E-09 62.1 2.8 74 215-293 98-176 (273)
396 KOG0460 Mitochondrial translat 97.4 0.00092 2E-08 60.0 9.1 113 168-293 54-182 (449)
397 KOG0469 Elongation factor 2 [T 97.4 0.00047 1E-08 64.7 7.6 112 167-292 18-161 (842)
398 COG0523 Putative GTPases (G3E 97.3 0.00063 1.4E-08 61.7 7.2 23 169-191 2-24 (323)
399 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0019 4E-08 46.9 8.3 71 171-261 2-72 (99)
400 PRK11537 putative GTP-binding 97.3 0.00069 1.5E-08 61.5 6.8 24 168-191 4-27 (318)
401 cd01857 HSR1_MMR1 HSR1/MMR1. 97.3 0.00067 1.5E-08 53.9 5.9 44 247-293 11-54 (141)
402 cd03111 CpaE_like This protein 97.3 0.00098 2.1E-08 50.4 6.5 91 173-290 5-106 (106)
403 KOG1143 Predicted translation 97.2 0.00049 1.1E-08 62.4 5.4 113 168-293 167-315 (591)
404 PF05621 TniB: Bacterial TniB 97.2 0.0074 1.6E-07 53.9 12.6 112 166-290 59-189 (302)
405 cd03110 Fer4_NifH_child This p 97.2 0.0044 9.6E-08 51.1 10.6 65 213-293 91-155 (179)
406 PRK10751 molybdopterin-guanine 97.1 0.0012 2.7E-08 54.4 6.1 24 168-191 6-29 (173)
407 PRK14737 gmk guanylate kinase; 97.1 0.00061 1.3E-08 57.0 4.3 42 167-208 3-45 (186)
408 cd03116 MobB Molybdenum is an 97.1 0.0012 2.6E-08 53.8 5.6 23 169-191 2-24 (159)
409 COG0194 Gmk Guanylate kinase [ 97.0 0.00041 8.9E-09 57.3 2.2 41 169-209 5-45 (191)
410 cd00071 GMPK Guanosine monopho 97.0 0.00091 2E-08 53.0 3.9 51 171-223 2-54 (137)
411 COG3640 CooC CO dehydrogenase 96.9 0.0021 4.5E-08 55.1 6.0 43 246-292 154-196 (255)
412 PRK14738 gmk guanylate kinase; 96.9 0.001 2.3E-08 56.5 4.1 26 167-192 12-37 (206)
413 TIGR00157 ribosome small subun 96.9 0.0016 3.5E-08 56.9 5.3 46 244-293 33-79 (245)
414 cd02042 ParA ParA and ParB of 96.9 0.0079 1.7E-07 44.9 8.3 71 171-259 2-73 (104)
415 COG0466 Lon ATP-dependent Lon 96.8 0.0096 2.1E-07 58.5 10.4 24 167-190 349-372 (782)
416 PF00004 AAA: ATPase family as 96.8 0.0046 1E-07 47.8 6.9 21 171-191 1-21 (132)
417 cd01859 MJ1464 MJ1464. This f 96.8 0.003 6.4E-08 50.9 5.9 46 243-293 8-53 (156)
418 PF13207 AAA_17: AAA domain; P 96.8 0.00086 1.9E-08 51.5 2.6 22 170-191 1-22 (121)
419 cd02036 MinD Bacterial cell di 96.8 0.0098 2.1E-07 48.7 9.0 62 216-292 64-125 (179)
420 PF02263 GBP: Guanylate-bindin 96.7 0.0055 1.2E-07 54.1 7.5 64 164-227 17-86 (260)
421 cd01855 YqeH YqeH. YqeH is an 96.7 0.0035 7.7E-08 52.3 6.0 47 240-293 27-73 (190)
422 PF05879 RHD3: Root hair defec 96.7 0.0015 3.2E-08 65.9 4.3 55 174-228 1-61 (742)
423 cd00009 AAA The AAA+ (ATPases 96.7 0.016 3.6E-07 44.9 9.4 25 168-192 19-43 (151)
424 PRK00300 gmk guanylate kinase; 96.7 0.0021 4.6E-08 54.2 4.4 25 168-192 5-29 (205)
425 TIGR03263 guanyl_kin guanylate 96.7 0.0021 4.6E-08 53.0 4.3 23 170-192 3-25 (180)
426 PRK08118 topology modulation p 96.7 0.0014 3E-08 53.8 3.0 23 169-191 2-24 (167)
427 COG1116 TauB ABC-type nitrate/ 96.6 0.0013 2.8E-08 56.9 2.7 24 170-193 31-54 (248)
428 PF13555 AAA_29: P-loop contai 96.6 0.0022 4.7E-08 43.5 3.2 20 170-189 25-44 (62)
429 PF05729 NACHT: NACHT domain 96.6 0.0083 1.8E-07 48.2 7.1 22 170-191 2-23 (166)
430 PF05783 DLIC: Dynein light in 96.6 0.004 8.6E-08 59.4 5.8 87 167-263 24-116 (472)
431 KOG2203 GTP-binding protein [G 96.6 0.0027 5.8E-08 60.3 4.4 61 167-227 36-100 (772)
432 PRK07261 topology modulation p 96.6 0.0016 3.5E-08 53.6 2.7 22 170-191 2-23 (171)
433 KOG0446 Vacuolar sorting prote 96.5 0.004 8.7E-08 61.7 5.3 124 167-293 28-211 (657)
434 COG0563 Adk Adenylate kinase a 96.5 0.0021 4.5E-08 53.4 2.8 22 170-191 2-23 (178)
435 PF13671 AAA_33: AAA domain; P 96.5 0.0018 4E-08 51.1 2.5 21 171-191 2-22 (143)
436 cd01856 YlqF YlqF. Proteins o 96.5 0.0061 1.3E-07 50.1 5.5 42 245-293 17-58 (171)
437 COG1136 SalX ABC-type antimicr 96.4 0.0021 4.5E-08 55.2 2.7 24 170-193 33-56 (226)
438 PF00005 ABC_tran: ABC transpo 96.4 0.0021 4.6E-08 50.4 2.6 25 169-193 12-36 (137)
439 PF13191 AAA_16: AAA ATPase do 96.4 0.0038 8.1E-08 51.4 4.1 23 167-189 23-45 (185)
440 cd01131 PilT Pilus retraction 96.4 0.0076 1.6E-07 50.9 6.0 22 170-191 3-24 (198)
441 PF00503 G-alpha: G-protein al 96.4 0.0074 1.6E-07 56.4 6.5 85 200-293 220-315 (389)
442 cd02019 NK Nucleoside/nucleoti 96.4 0.0027 5.9E-08 44.0 2.5 21 171-191 2-22 (69)
443 KOG0466 Translation initiation 96.4 0.0037 8E-08 55.4 3.8 65 216-293 126-191 (466)
444 TIGR03596 GTPase_YlqF ribosome 96.4 0.0093 2E-07 53.1 6.5 42 245-293 19-60 (276)
445 PRK09270 nucleoside triphospha 96.3 0.0044 9.6E-08 53.5 4.2 25 167-191 32-56 (229)
446 PHA02518 ParA-like protein; Pr 96.3 0.032 7E-07 47.0 9.1 67 215-292 77-144 (211)
447 TIGR00235 udk uridine kinase. 96.3 0.0034 7.4E-08 53.3 3.0 25 166-190 4-28 (207)
448 COG3840 ThiQ ABC-type thiamine 96.3 0.0037 7.9E-08 51.7 3.0 25 169-193 26-50 (231)
449 KOG0057 Mitochondrial Fe/S clu 96.2 0.096 2.1E-06 50.2 12.7 70 41-110 200-272 (591)
450 KOG0463 GTP-binding protein GP 96.2 0.007 1.5E-07 55.1 4.9 24 168-191 133-156 (641)
451 cd01854 YjeQ_engC YjeQ/EngC. 96.2 0.0063 1.4E-07 54.5 4.7 46 244-293 75-121 (287)
452 COG1341 Predicted GTPase or GT 96.2 0.021 4.6E-07 52.7 8.0 26 165-190 70-95 (398)
453 smart00382 AAA ATPases associa 96.2 0.0046 9.9E-08 47.6 3.2 25 169-193 3-27 (148)
454 PRK13900 type IV secretion sys 96.2 0.014 3.1E-07 53.3 6.8 25 168-192 160-184 (332)
455 COG1126 GlnQ ABC-type polar am 96.2 0.004 8.6E-08 52.8 2.9 24 169-192 29-52 (240)
456 PF00625 Guanylate_kin: Guanyl 96.2 0.0023 5E-08 53.2 1.5 38 169-206 3-42 (183)
457 PF13521 AAA_28: AAA domain; P 96.2 0.0028 6.1E-08 51.5 1.9 23 170-192 1-23 (163)
458 PF13238 AAA_18: AAA domain; P 96.1 0.0037 8.1E-08 48.1 2.5 21 171-191 1-21 (129)
459 PRK06217 hypothetical protein; 96.1 0.0043 9.4E-08 51.6 3.0 23 169-191 2-24 (183)
460 PRK10078 ribose 1,5-bisphospho 96.1 0.0042 9.1E-08 51.8 2.8 22 170-191 4-25 (186)
461 TIGR02322 phosphon_PhnN phosph 96.1 0.0039 8.4E-08 51.5 2.6 22 170-191 3-24 (179)
462 KOG2749 mRNA cleavage and poly 96.1 0.022 4.8E-07 51.7 7.4 24 167-190 102-125 (415)
463 PRK00098 GTPase RsgA; Reviewed 96.1 0.0098 2.1E-07 53.5 5.3 46 245-293 78-123 (298)
464 PRK05480 uridine/cytidine kina 96.1 0.0051 1.1E-07 52.2 3.3 25 167-191 5-29 (209)
465 cd02037 MRP-like MRP (Multiple 96.1 0.028 6.2E-07 45.9 7.6 64 214-292 67-132 (169)
466 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0051 1.1E-07 50.9 3.1 22 168-189 3-24 (188)
467 KOG2743 Cobalamin synthesis pr 96.0 0.038 8.1E-07 49.1 8.4 25 167-191 56-80 (391)
468 cd01130 VirB11-like_ATPase Typ 96.0 0.0051 1.1E-07 51.3 3.0 24 169-192 26-49 (186)
469 COG3839 MalK ABC-type sugar tr 96.0 0.0044 9.5E-08 56.4 2.7 23 170-192 31-53 (338)
470 PF03205 MobB: Molybdopterin g 96.0 0.0045 9.7E-08 49.3 2.5 23 169-191 1-23 (140)
471 KOG3347 Predicted nucleotide k 96.0 0.0048 1E-07 49.2 2.5 24 167-190 6-29 (176)
472 TIGR00150 HI0065_YjeE ATPase, 96.0 0.034 7.3E-07 43.8 7.3 23 169-191 23-45 (133)
473 PRK08233 hypothetical protein; 96.0 0.0054 1.2E-07 50.5 2.9 23 169-191 4-26 (182)
474 PRK14530 adenylate kinase; Pro 96.0 0.0054 1.2E-07 52.4 3.0 22 169-190 4-25 (215)
475 cd03222 ABC_RNaseL_inhibitor T 96.0 0.0061 1.3E-07 50.5 3.1 25 169-193 26-50 (177)
476 cd02032 Bchl_like This family 96.0 0.05 1.1E-06 47.9 9.1 19 170-188 2-20 (267)
477 PRK03839 putative kinase; Prov 96.0 0.0054 1.2E-07 50.7 2.7 22 170-191 2-23 (180)
478 PRK13894 conjugal transfer ATP 95.9 0.022 4.8E-07 51.7 6.7 24 168-191 148-171 (319)
479 cd03261 ABC_Org_Solvent_Resist 95.9 0.0061 1.3E-07 52.7 2.9 24 169-192 27-50 (235)
480 cd02023 UMPK Uridine monophosp 95.9 0.0055 1.2E-07 51.5 2.5 21 171-191 2-22 (198)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.0072 1.6E-07 51.6 3.2 24 169-192 31-54 (218)
482 PRK09563 rbgA GTPase YlqF; Rev 95.9 0.015 3.2E-07 52.1 5.4 42 245-293 22-63 (287)
483 TIGR00960 3a0501s02 Type II (G 95.9 0.0072 1.6E-07 51.5 3.2 24 169-192 30-53 (216)
484 PRK13949 shikimate kinase; Pro 95.9 0.0065 1.4E-07 49.9 2.8 23 169-191 2-24 (169)
485 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0073 1.6E-07 51.2 3.2 24 169-192 28-51 (211)
486 TIGR01166 cbiO cobalt transpor 95.9 0.0066 1.4E-07 50.7 2.9 24 169-192 19-42 (190)
487 COG1120 FepC ABC-type cobalami 95.8 0.0076 1.6E-07 52.8 3.2 24 168-191 28-51 (258)
488 cd03226 ABC_cobalt_CbiO_domain 95.8 0.0067 1.4E-07 51.3 2.8 24 169-192 27-50 (205)
489 cd03265 ABC_DrrA DrrA is the A 95.8 0.0067 1.5E-07 51.9 2.9 24 169-192 27-50 (220)
490 cd03264 ABC_drug_resistance_li 95.8 0.0064 1.4E-07 51.6 2.7 23 170-192 27-49 (211)
491 TIGR03608 L_ocin_972_ABC putat 95.8 0.0069 1.5E-07 51.1 2.9 24 169-192 25-48 (206)
492 TIGR03597 GTPase_YqeH ribosome 95.8 0.0099 2.2E-07 55.0 4.1 46 241-293 57-102 (360)
493 PRK12289 GTPase RsgA; Reviewed 95.8 0.024 5.1E-07 52.3 6.4 45 246-293 88-132 (352)
494 cd00820 PEPCK_HprK Phosphoenol 95.8 0.007 1.5E-07 45.8 2.4 21 169-189 16-36 (107)
495 TIGR02673 FtsE cell division A 95.8 0.0072 1.6E-07 51.4 2.9 24 169-192 29-52 (214)
496 cd03269 ABC_putative_ATPase Th 95.8 0.0075 1.6E-07 51.2 2.9 24 169-192 27-50 (210)
497 PRK13851 type IV secretion sys 95.8 0.0077 1.7E-07 55.2 3.1 25 168-192 162-186 (344)
498 PF00437 T2SE: Type II/IV secr 95.7 0.013 2.7E-07 51.9 4.4 24 168-191 127-150 (270)
499 cd03262 ABC_HisP_GlnQ_permease 95.7 0.0089 1.9E-07 50.7 3.3 24 169-192 27-50 (213)
500 cd03293 ABC_NrtD_SsuB_transpor 95.7 0.0075 1.6E-07 51.6 2.9 24 169-192 31-54 (220)
No 1
>COG1084 Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.4e-73 Score=495.35 Aligned_cols=291 Identities=43% Similarity=0.793 Sum_probs=284.2
Q ss_pred cccccccCCCCCChHHHHHHHHhhhhhcCCccccC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHH
Q 040152 2 VQYNFKKITVVPNGKDIVDIILSRTQRQTPTVVHK-GYSITRLRQFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYG 80 (293)
Q Consensus 2 ~~~~f~~i~~v~~~~e~id~~~~r~~~~~~~~~~~-~~~~~ri~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~ 80 (293)
+.++|++||+||+++|+||++|+||+|++++..++ +..+.+++.+|+++++++++.+.++|++++..||.++++||||+
T Consensus 1 ~~~~f~kiptv~~~~ElIdk~f~Ra~r~~~~~~~~~~~~~~kar~~e~~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~ 80 (346)
T COG1084 1 MMNPFKKIPTVPTADELIDKAFRRAERAESTVRPDKGPKIVKAREFEIRRVKTASNIVRDRLDKIVERFPSLDDLHPFYR 80 (346)
T ss_pred CCCccccCCCCCCcHHHHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccChHHH
Confidence 36899999999999999999999999999887776 67888999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhhhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhc
Q 040152 81 DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMAR 160 (293)
Q Consensus 81 ~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~ 160 (293)
+|+|++++.++||.+|++++||...+.++.++|+++++++.++++|.+++++++||++++++++.+.|++++++++++++
T Consensus 81 eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~ 160 (346)
T COG1084 81 ELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKK 160 (346)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHH
Q 040152 161 LPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS 240 (293)
Q Consensus 161 ~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~ 240 (293)
+|.++++.++|+|+|+||||||||+++++++++++++|||||+++++|+++.++.+||++||||++|+|.+++|.+|+++
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 241 ~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.++.+.+++|+|++|+|..|+|+.+.|.+++.+++..|. .|+++|+||+|+
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~ 292 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDI 292 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccc
Confidence 9999999999999999999999999999999999999986 899999999995
No 2
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-69 Score=491.28 Aligned_cols=293 Identities=69% Similarity=1.140 Sum_probs=290.4
Q ss_pred CcccccccCCCCCChHHHHHHHHhhhhhcCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHH
Q 040152 1 MVQYNFKKITVVPNGKDIVDIILSRTQRQTPTVVHKGYSITRLRQFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYG 80 (293)
Q Consensus 1 ~~~~~f~~i~~v~~~~e~id~~~~r~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~ 80 (293)
|+.++|++|++||++.+|+|.+++++|+++||+++++++|.|||.||+++++++++.+.++|.+++.+||.++++||||+
T Consensus 1 m~~~nfk~it~Vp~~~~~~d~~ls~tQr~tPTvi~k~~~i~riR~fy~rkvk~~~~~~~~kL~~il~~FP~~~~ihPfy~ 80 (620)
T KOG1490|consen 1 MAKANFKKITPVPDVNDFLDVVLSRTQRKTPTVIRKGFKISRIRQFYARKVKFTQTTLTEKLDDILQEFPKLNDIHPFYA 80 (620)
T ss_pred CcccccccccccCchhHHHHHHHhhhccCCCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhhhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhc
Q 040152 81 DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMAR 160 (293)
Q Consensus 81 ~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~ 160 (293)
+|++++++++||+.+|+|++.|+.+++.++++|++++++++|.++|++++++++|||+.+++++...+++|+++++++++
T Consensus 81 dL~~~ly~~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~r 160 (620)
T KOG1490|consen 81 DLLNILYDRDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSR 160 (620)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHH
Q 040152 161 LPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS 240 (293)
Q Consensus 161 ~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~ 240 (293)
+|.+++..++++++|+||||||||+|.++.+++.+++|+|||+...+|++++....|+++||||++|++.+++|.+|+++
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 241 ~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.+++|...+|||++|.|..|+++.++|.+++..++++|.++|+|+|+||+|+
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999995
No 3
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.95 E-value=2.5e-26 Score=210.03 Aligned_cols=230 Identities=20% Similarity=0.241 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHH--HHHHHHHhHhccCCchh-h-
Q 040152 50 KVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDSLY-R- 125 (293)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~--~~~~~~~~~~~~~~~~~-~- 125 (293)
-++..|....++.. +.+++|+. ..+|+||..+++++++.+|++.|+..+. ++...|.++.+.+.... +
T Consensus 75 ~l~p~q~~nl~~~~----~~~v~Dr~----~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g 146 (351)
T TIGR03156 75 ELSPSQERNLEKAL----GCRVIDRT----GLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRG 146 (351)
T ss_pred CCCHHHHHHHHHHh----CCcccchH----HHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCC
Confidence 45566655444433 57899988 9999999999999999999999998664 44444544333221110 0
Q ss_pred --hhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCcccee
Q 040152 126 --CKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTK 203 (293)
Q Consensus 126 --~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~ 203 (293)
...+ ......+...+.++.+.++.+...+...+... .....++|+++|+||||||||+|+|++..+.+.+.+|+|.
T Consensus 147 ~gE~~~-~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r-~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~ 224 (351)
T TIGR03156 147 PGETQL-ETDRRLIRERIAQLKKELEKVEKQRERQRRRR-KRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL 224 (351)
T ss_pred CChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc
Confidence 0011 11112334444444445555554444333222 2234579999999999999999999999877888999999
Q ss_pred eeeEEEEEe-cCceEEEEeCCCCCCC-CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhccC
Q 040152 204 SLFVGHTDY-KYLRYQVIDTPGILDR-PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA-ALFHSIKSLFM 280 (293)
Q Consensus 204 ~~~~~~~~~-~~~~~~iiDTpG~~~~-~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~~~ 280 (293)
++....+.+ ++..+.+|||||+... +......+ ..++.. ...+|++++|+|++++........+ .++..+.. .
T Consensus 225 d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~-~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--~ 300 (351)
T TIGR03156 225 DPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEE-VREADLLLHVVDASDPDREEQIEAVEKVLEELGA--E 300 (351)
T ss_pred CCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHH-HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc--C
Confidence 999999988 5678999999999553 22211111 123332 3457999999999987654332211 33444332 4
Q ss_pred CCcEEEEEeccCC
Q 040152 281 NKPLIIVCNKTDL 293 (293)
Q Consensus 281 ~~piivV~NK~Dl 293 (293)
+.|+++|+||+|+
T Consensus 301 ~~piIlV~NK~Dl 313 (351)
T TIGR03156 301 DIPQLLVYNKIDL 313 (351)
T ss_pred CCCEEEEEEeecC
Confidence 7899999999996
No 4
>PRK11058 GTPase HflX; Provisional
Probab=99.95 E-value=1.8e-26 Score=215.57 Aligned_cols=228 Identities=18% Similarity=0.246 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHH--HHHHHHHhHhccCCchh---
Q 040152 50 KVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDSLY--- 124 (293)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~--~~~~~~~~~~~~~~~~~--- 124 (293)
.++.+|....++.. +.+++|+. ..||+||..+++++++.+||+.|+..|. ++...|.++-+.++...
T Consensus 83 ~lsp~q~~nle~~~----~~~v~DR~----~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g 154 (426)
T PRK11058 83 ALSPAQERNLERLC----ECRVIDRT----GLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRG 154 (426)
T ss_pred CCCHHHHHHHHHHH----CCeEecch----hHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCC
Confidence 45566654444433 57999998 9999999999999999999999999887 33344555444332110
Q ss_pred ----hhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCcc
Q 040152 125 ----RCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAF 200 (293)
Q Consensus 125 ----~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~ 200 (293)
.....++....++..+. +.++.+...+...+ ........+.|+++|+||||||||+|+|++.++.+++.+|
T Consensus 155 ~ge~~~e~d~r~i~~ri~~l~----~~L~~~~~~r~~~r-~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~ 229 (426)
T PRK11058 155 PGETQLETDRRLLRNRIVQIL----SRLERVEKQREQGR-RARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLF 229 (426)
T ss_pred CChhHhHHHHHHHHHHHHHHH----HHHHHHHHhHHHHH-HHhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCC
Confidence 11112223333444333 33333333332111 1111123468999999999999999999999888889999
Q ss_pred ceeeeeEEEEEecCc-eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHH-HHHHHHHhhc
Q 040152 201 TTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ-AALFHSIKSL 278 (293)
Q Consensus 201 tt~~~~~~~~~~~~~-~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~-~~~l~~l~~~ 278 (293)
+|.++..+.+.+.+. .+.+|||||+....+...-.....++.. ...+|++++|+|++++..+..... ..++.++..
T Consensus 230 tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~-~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~- 307 (426)
T PRK11058 230 ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE-TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA- 307 (426)
T ss_pred CCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH-hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc-
Confidence 999999988888765 7899999999554222111111122222 345799999999999754433321 244555543
Q ss_pred cCCCcEEEEEeccCC
Q 040152 279 FMNKPLIIVCNKTDL 293 (293)
Q Consensus 279 ~~~~piivV~NK~Dl 293 (293)
.+.|+++|+||+|+
T Consensus 308 -~~~pvIiV~NKiDL 321 (426)
T PRK11058 308 -HEIPTLLVMNKIDM 321 (426)
T ss_pred -CCCCEEEEEEcccC
Confidence 47899999999996
No 5
>COG2262 HflX GTPases [General function prediction only]
Probab=99.94 E-value=2.5e-26 Score=206.65 Aligned_cols=225 Identities=19% Similarity=0.224 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHH--HHHHHHHhHhccCCc-----
Q 040152 50 KVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDS----- 122 (293)
Q Consensus 50 ~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~--~~~~~~~~~~~~~~~----- 122 (293)
.++.+|....++ .+ +..++|++ ..||+||..++.++++.+||+.|+..|. .+...|.++-+.|+.
T Consensus 78 ~LsP~Q~~NLe~---~l-~~kVIDRt----~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rG 149 (411)
T COG2262 78 ELSPSQLRNLEK---EL-GVKVIDRT----QLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRG 149 (411)
T ss_pred cCCHHHHHHHHH---HH-CCEEEehH----hHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCC
Confidence 466677554444 33 57889999 9999999999999999999999999877 445445443323322
Q ss_pred --hhhhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCcc
Q 040152 123 --LYRCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAF 200 (293)
Q Consensus 123 --~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~ 200 (293)
-++....++ .+...+.++++.++.+++.|+..++ .+.....+.|.++|++|+|||||+|+|++....+.+..|
T Consensus 150 pGE~~lE~drR----~ir~rI~~i~~eLe~v~~~R~~~R~-~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF 224 (411)
T COG2262 150 PGETQLETDRR----RIRRRIAKLKRELENVEKAREPRRK-KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF 224 (411)
T ss_pred CCchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh-hhcccCCCeEEEEeeccccHHHHHHHHhccCeecccccc
Confidence 111222233 3444455555566666666655443 233346789999999999999999999999999999999
Q ss_pred ceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHH----HHHHHH
Q 040152 201 TTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA----ALFHSI 275 (293)
Q Consensus 201 tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~----~~l~~l 275 (293)
+|.++....+.++ +..+.+.||.||+++-+...-.-.+.++....+ +|++++|+|+|+|. ...++ +++.++
T Consensus 225 ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~-aDlllhVVDaSdp~---~~~~~~~v~~vL~el 300 (411)
T COG2262 225 ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKE-ADLLLHVVDASDPE---ILEKLEAVEDVLAEI 300 (411)
T ss_pred ccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhc-CCEEEEEeecCChh---HHHHHHHHHHHHHHc
Confidence 9999999999998 478999999999998655543334455555444 59999999999983 23333 344444
Q ss_pred hhccCCCcEEEEEeccCC
Q 040152 276 KSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 276 ~~~~~~~piivV~NK~Dl 293 (293)
.. ...|+|+|+||+|+
T Consensus 301 ~~--~~~p~i~v~NKiD~ 316 (411)
T COG2262 301 GA--DEIPIILVLNKIDL 316 (411)
T ss_pred CC--CCCCEEEEEecccc
Confidence 33 46899999999994
No 6
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.90 E-value=9.3e-23 Score=167.44 Aligned_cols=125 Identities=69% Similarity=1.117 Sum_probs=101.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
++|+++|.+|||||||+|+|++..+.+.+++++|.+...+...+++.++++|||||+.+.+..+++.++..++.++.+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 47999999999999999999999887777889999998888888888999999999976655555555555555555667
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|++++|+|++++.++....+..|+..++....+.|+++|+||+|+
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl 125 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDL 125 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcccc
Confidence 999999999987766545445677777765458999999999996
No 7
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=8.1e-21 Score=153.44 Aligned_cols=115 Identities=24% Similarity=0.321 Sum_probs=88.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh-hccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL-AHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l-~~~~ 248 (293)
+|+++|.||||||||+|+|+|.+..++++|++|.+...+.+.+++..+.++||||..+..... .-|..+...+ ...+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s--~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS--EEERVARDYLLSEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS--HHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC--cHHHHHHHHHhhcCC
Confidence 699999999999999999999999999999999999999999999999999999987643221 1122222333 3457
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|++++|+|+++ .+..+.++.++.+ .+.|+++|+||+|+
T Consensus 80 D~ii~VvDa~~-----l~r~l~l~~ql~e--~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 80 DLIIVVVDATN-----LERNLYLTLQLLE--LGIPVVVVLNKMDE 117 (156)
T ss_dssp SEEEEEEEGGG-----HHHHHHHHHHHHH--TTSSEEEEEETHHH
T ss_pred CEEEEECCCCC-----HHHHHHHHHHHHH--cCCCEEEEEeCHHH
Confidence 99999999987 3444566677766 48999999999984
No 8
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.84 E-value=8.3e-20 Score=155.14 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=97.3
Q ss_pred hcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc-eEEEEeC
Q 040152 144 IGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDT 222 (293)
Q Consensus 144 ~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~iiDT 222 (293)
++++++.+.+.+...+..+. ....++|+++|.+|||||||+|++++..+.+.+.+++|.+.....+.+++. .+.+|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~-~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt 96 (204)
T cd01878 18 LRRELEKVKKQRELQRRRRK-RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDT 96 (204)
T ss_pred HHHHHHHHHHhHHHHHHhhh-hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCC
Confidence 33444555555554444332 345679999999999999999999998876667778888887777777665 8999999
Q ss_pred CCCCCCCCCchhHHH-HHHHHHhhccCcEEEEEEeCCCCCCCCHHHH-HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 223 PGILDRPFEDRNIIE-MCSITALAHLRSAVLFFLDISGSCGYSIAQQ-AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 223 pG~~~~~~~~~~~~e-~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~-~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
||+.+...... .+ ..........+|++++|+|++++.+...... .+++..+.. .+.|+++|+||+|+
T Consensus 97 ~G~~~~~~~~~--~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl 165 (204)
T cd01878 97 VGFIRDLPHQL--VEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDL 165 (204)
T ss_pred CccccCCCHHH--HHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEcccc
Confidence 99865432211 11 1111122344699999999998765543321 133333322 46899999999996
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=7.1e-20 Score=167.47 Aligned_cols=118 Identities=27% Similarity=0.439 Sum_probs=96.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC-chhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~-~~~~~e~~~~~~l~~ 246 (293)
+.|+++|.||||||||+|+|++.... ++++|++|++...+...|.+..+.++||+|+.+...+ -...+..++..++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999987 8999999999999999999999999999999754422 233445566667655
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
||++|||+|... +.+.++. .+.+.++. .++|+++|+||+|
T Consensus 84 -ADvilfvVD~~~--Git~~D~-~ia~~Lr~--~~kpviLvvNK~D 123 (444)
T COG1160 84 -ADVILFVVDGRE--GITPADE-EIAKILRR--SKKPVILVVNKID 123 (444)
T ss_pred -CCEEEEEEeCCC--CCCHHHH-HHHHHHHh--cCCCEEEEEEccc
Confidence 599999999977 4444443 44555553 5799999999998
No 10
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1e-19 Score=148.55 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=95.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
..++|+++|.+|||||+|+.++.+..+..........++....+++++. +++||||+|+ +| +.++ ..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ------ER----Frtit~s 77 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ------ER----FRTITSS 77 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecccc------HH----HhhhhHh
Confidence 4579999999999999999999999987666555566777777777765 5899999998 43 2333 56
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+++.+++||+|+|+++..+|+... .|+.++.... .+.|.++|+||||+
T Consensus 78 yYR~ahGii~vyDiT~~~SF~~v~--~Wi~Ei~~~~~~~v~~lLVGNK~Dl 126 (205)
T KOG0084|consen 78 YYRGAHGIIFVYDITKQESFNNVK--RWIQEIDRYASENVPKLLVGNKCDL 126 (205)
T ss_pred hccCCCeEEEEEEcccHHHhhhHH--HHHHHhhhhccCCCCeEEEeecccc
Confidence 778899999999999999999887 6898988764 46799999999996
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.82 E-value=7.9e-19 Score=161.07 Aligned_cols=117 Identities=32% Similarity=0.434 Sum_probs=92.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHH---H
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI---T 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~---~ 242 (293)
+..+++++|.||||||||+|+|++.+.. +++.|+||++....++..+|.++.++||+|+.+.. +.+|+..+ .
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~----d~VE~iGIeRs~ 291 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD----DVVERIGIERAK 291 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc----cHHHHHHHHHHH
Confidence 5679999999999999999999999877 89999999999999999999999999999997543 33443333 1
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....||.||||+|++.+.. ..+ ..++..+ ..++|+++|+||+||
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~--~~d-~~~~~~~---~~~~~~i~v~NK~DL 336 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLD--KED-LALIELL---PKKKPIIVVLNKADL 336 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCc--hhh-HHHHHhc---ccCCCEEEEEechhc
Confidence 22334799999999999632 222 1334312 257999999999997
No 12
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=1.8e-19 Score=156.79 Aligned_cols=120 Identities=27% Similarity=0.407 Sum_probs=94.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
..-|+++|.||||||||+|+|.|.+.. +++.|.||+....|.+..++.++.++||||+..........+-..+..++ .
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl-~ 84 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL-K 84 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh-c
Confidence 346999999999999999999999998 89999999999999999999999999999997653222222333344444 3
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|+++||+|+++..+.... .+++.++. .+.|+++++||+|.
T Consensus 85 dvDlilfvvd~~~~~~~~d~---~il~~lk~--~~~pvil~iNKID~ 126 (298)
T COG1159 85 DVDLILFVVDADEGWGPGDE---FILEQLKK--TKTPVILVVNKIDK 126 (298)
T ss_pred cCcEEEEEEeccccCCccHH---HHHHHHhh--cCCCeEEEEEcccc
Confidence 46999999999996665433 34555555 46899999999994
No 13
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=2.2e-19 Score=163.13 Aligned_cols=121 Identities=23% Similarity=0.395 Sum_probs=92.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe-cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..|+++|.||||||||+|+|+++++.+++|||||..+..+.+.+ ++..+++|||||+.+...... .+....+..+ +.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~-gLg~~flrhi-e~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGA-GLGHRFLKHI-ER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccc-cHHHHHHHHh-hh
Confidence 47999999999999999999999988999999999999999998 456799999999986543321 1222223333 24
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
+++++||+|+++..+++... .|..++... ..++|+++|+||+|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~--~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYK--TIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHH--HHHHHHHHhhhhcccCCeEEEEECccc
Confidence 69999999999865433322 566666543 236899999999996
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=1.1e-18 Score=154.89 Aligned_cols=117 Identities=23% Similarity=0.359 Sum_probs=86.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
.|+++|.||||||||+|+|++.++. +++.++||+....+....++.++.+|||||+.+........+...+.. ....+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~-~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARS-AIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHH-HHhhC
Confidence 6899999999999999999999875 788899999887777666777899999999965421111111112222 33457
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|++++|+|+++..+.. . .++..+.. .+.|+++|+||+|+
T Consensus 81 Dvvl~VvD~~~~~~~~--~--~i~~~l~~--~~~p~ilV~NK~Dl 119 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--E--FVLTKLQN--LKRPVVLTRNKLDN 119 (270)
T ss_pred CEEEEEEECCCCCchH--H--HHHHHHHh--cCCCEEEEEECeeC
Confidence 9999999999854432 2 34445544 47899999999996
No 15
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.79 E-value=4.6e-18 Score=159.96 Aligned_cols=117 Identities=29% Similarity=0.402 Sum_probs=89.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHH---H
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI---T 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~---~ 242 (293)
...+|+++|.||||||||+|+|++... .++++++||++.....+.+++..+.+|||||+.+.. ..++...+ .
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~----~~ie~~gi~~~~ 277 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA----DFVERLGIEKSF 277 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch----hHHHHHHHHHHH
Confidence 456899999999999999999998765 378899999999999999999999999999985432 22222111 1
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+|++++|+|++++.++... |+..+.. .+.|+++|+||+|+
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~----~l~~~~~--~~~piIlV~NK~Dl 322 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF----LIIDLNK--SKKPFILVLNKIDL 322 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH----HHHHHhh--CCCCEEEEEECccC
Confidence 233457999999999986554321 5555543 47899999999996
No 16
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=5e-18 Score=160.42 Aligned_cols=116 Identities=30% Similarity=0.423 Sum_probs=88.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHH---H
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI---T 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~---~ 242 (293)
..++|+++|+||||||||+|+|++.+.. +++.+++|.+.....+.+++.++.+|||||+.+.. +.++...+ .
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~----~~ie~~gi~~~~ 289 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD----DEVEKIGIERSR 289 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc----cHHHHHHHHHHH
Confidence 3468999999999999999999998764 78899999999999999999999999999985421 22222111 1
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+|++++|+|++++.++... .++.. ..+.|+++|+||+|+
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~---~~l~~----~~~~piiiV~NK~DL 333 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDD---EILEE----LKDKPVIVVLNKADL 333 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHH---HHHHh----cCCCCcEEEEEhhhc
Confidence 234457999999999987654422 33333 247899999999996
No 17
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.79 E-value=8.9e-19 Score=143.89 Aligned_cols=120 Identities=25% Similarity=0.384 Sum_probs=87.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc-eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
+|+++|.+|||||||+|+|.+....++.++++|.....+.+.+++. .+.+|||||+.+...... .+....+..+ ..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~-~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGK-GLGHRFLRHI-ERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccC-CchHHHHHHH-HhC
Confidence 5899999999999999999988777778888898888888888776 899999999864322211 1111222222 246
Q ss_pred cEEEEEEeCCCC-CCCCHHHHHHHHHHHhhcc---CCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGS-CGYSIAQQAALFHSIKSLF---MNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~-~~~~~~~~~~~l~~l~~~~---~~~piivV~NK~Dl 293 (293)
|++++|+|++++ .++.... .|.+++.... .+.|+++|+||+|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~--~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYK--TIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CEEEEEEecCCCCCHHHHHH--HHHHHHHHhCccccccccEEEEEchhc
Confidence 999999999986 4443332 4555554432 36899999999996
No 18
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.78 E-value=3.8e-18 Score=131.98 Aligned_cols=114 Identities=27% Similarity=0.456 Sum_probs=85.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchh-HHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRN-IIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~-~~e~~~~~~l~~~ 247 (293)
+|+++|.+|+|||||+|+|++.+. .+++.+++|.....+.+.+++..+.++||||+.+....... .........+ ..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~-~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI-SK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH-CT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH-HH
Confidence 589999999999999999998754 47888999999988888889999999999999765322211 1122344455 55
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEec
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK 290 (293)
+|+++||+|++++ ......+++++++ .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~---~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNP---ITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSH---SHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCC---CCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 6999999997762 1222335666664 48999999998
No 19
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.78 E-value=2.3e-18 Score=145.87 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=82.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+.++.....|.++.+.....+.+++. .+++|||||..+.+.............. ...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~-~~~ 80 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG-LRN 80 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhh-hcc
Confidence 7999999999999999999998876554555444544445556663 5789999998554322221111111222 245
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc----cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~----~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+++... .|...+... ..+.|+++|+||+|+
T Consensus 81 ad~iilv~D~~~~~S~~~~~--~~~~~i~~~~~~~~~~~piiivgNK~Dl 128 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVK--LLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcccCCCCCCEEEEEECccc
Confidence 79999999999987776554 445544432 257899999999996
No 20
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=3.8e-18 Score=158.95 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=91.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
.|+++|.||||||||+|+|+++++.++++||||..+..+.+.++ +..+.+|||||+.+...+.. .+-...+..+ +.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~-gLg~~fLrhi-er~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV-GLGHQFLRHI-ERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc-hHHHHHHHHH-hhC
Confidence 89999999999999999999999889999999999999998887 67899999999976433221 1112222222 236
Q ss_pred cEEEEEEeCCCCCCCCHH-HHHHHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIA-QQAALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~-~~~~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
++++||+|+++..+.+.. +...|..++... ..++|+++|+||+||
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 999999999875322222 222455555543 247899999999996
No 21
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=2.3e-18 Score=156.27 Aligned_cols=123 Identities=24% Similarity=0.384 Sum_probs=91.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..|+++|.||||||||+|+|++....++++||||..+..+.+.+++ ..+++|||||+.+...... .+....++.+ +.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~-gLg~~flrhi-er 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGA-GLGHRFLKHI-ER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccc-cHHHHHHHHH-Hh
Confidence 4799999999999999999999988899999999999999999877 7899999999976433221 1222223333 23
Q ss_pred CcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQA-ALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
+|++++|+|+++...-+..+.+ .|.+++... ..++|+++|+||+|+
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL 285 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDL 285 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccC
Confidence 6999999999975222222222 455555433 247899999999996
No 22
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.78 E-value=2.4e-18 Score=150.24 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=137.4
Q ss_pred CCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHH--HHHHHHHhHhccCCchhhhhhhHHHhhhhHHHHHHhhc-
Q 040152 69 FPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIS--KIAKDYVKLLKYGDSLYRCKSLKVAALGRMCTVVKRIG- 145 (293)
Q Consensus 69 ~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 145 (293)
.|.+|+. ..++++|-+.+.++++..|+..|..-+. ++..+|.++.+..++.-. ....+..-+++..+++..+
T Consensus 80 VrvfDr~----~~vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~-gsges~id~d~~rllr~kea 154 (410)
T KOG0410|consen 80 VRVFDRR----HTVLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVK-GSGESIIDRDIRRLLRIKEA 154 (410)
T ss_pred eeeecch----hhHHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCccc-CccchHhHHHHHHHHHHHHH
Confidence 4555655 7789999999999999999999987443 556666666654322100 0000111112212221111
Q ss_pred ccHHHHHHHHHHh-hcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-ceEEEEeCC
Q 040152 146 PSLAYLEQIRQHM-ARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTP 223 (293)
Q Consensus 146 ~~l~~l~~~~~~~-~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~iiDTp 223 (293)
...+.|+.++.+. .+........+.|.++|++|+|||||+++|+++.....+..|.|.+++......+. ..+.+.||.
T Consensus 155 ~lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTv 234 (410)
T KOG0410|consen 155 QLRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTV 234 (410)
T ss_pred HHHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeech
Confidence 1122344444333 23344445678999999999999999999999888888999999999988777754 458999999
Q ss_pred CCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-C----CCcEEEEEeccCC
Q 040152 224 GILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-M----NKPLIIVCNKTDL 293 (293)
Q Consensus 224 G~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~----~~piivV~NK~Dl 293 (293)
||+...+...-.-...++....+ +|++++|+|+|+|.-..... ..+..+..+. + ...++-|.||+|.
T Consensus 235 GFisdLP~~LvaAF~ATLeeVae-adlllHvvDiShP~ae~q~e--~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 235 GFISDLPIQLVAAFQATLEEVAE-ADLLLHVVDISHPNAEEQRE--TVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred hhhhhCcHHHHHHHHHHHHHHhh-cceEEEEeecCCccHHHHHH--HHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 99886543322222234444444 59999999999985332222 3444454432 1 1237788899884
No 23
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.77 E-value=4.7e-18 Score=138.35 Aligned_cols=113 Identities=21% Similarity=0.250 Sum_probs=87.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++.+.++.....++++.+.....+.+++. .+++|||||.. + . ......+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~------~--~-~~~~~~~~~~ 72 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE------R--F-RSLIPSYIRD 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH------H--H-HHHHHHHhcc
Confidence 7999999999999999999999988777777887777777777664 58999999962 1 1 1223344556
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~~~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 73 SSVAVVVYDITNRQSFDNTD--KWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred CCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEEEChhc
Confidence 79999999999987765544 5666665432 25899999999996
No 24
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=7.4e-18 Score=153.87 Aligned_cols=121 Identities=27% Similarity=0.432 Sum_probs=89.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
...+|+++|.+|||||||+|+|.+..+. +++.++||++...+.+.+++.++.+|||||+.+........+...+..+ .
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~-l 129 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS-L 129 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH-h
Confidence 3458999999999999999999998876 5678889998888888888889999999998653222112222223333 3
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++ ++..... .++..++. .+.|.++|+||+|+
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~-~il~~l~~--~~~p~IlViNKiDl 172 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITH-NILDKLRS--LNIVPIFLLNKIDI 172 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHH-HHHHHHHh--cCCCEEEEEEhhcC
Confidence 45799999999876 4444432 45666654 35688899999996
No 25
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=6.1e-18 Score=159.58 Aligned_cols=123 Identities=22% Similarity=0.372 Sum_probs=89.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
..|+++|.||||||||+|+|++.++.++++||||..++.+.+.+++..+++|||||+.+...... .+....+..+ ..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~-gLg~~fLrhi-era 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK-GLGLDFLRHI-ERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh-HHHHHHHHHH-Hhc
Confidence 48999999999999999999999998999999999999999999999999999999975432221 1222223322 336
Q ss_pred cEEEEEEeCCCCC-CCCHHHHH-HHHHHHhhc------------cCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSC-GYSIAQQA-ALFHSIKSL------------FMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~-~~~~~~~~-~~l~~l~~~------------~~~~piivV~NK~Dl 293 (293)
|+++||+|+++.. +.+....+ .+..++... ..++|+|+|+||+|+
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL 296 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV 296 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence 9999999998632 11111111 223333221 246899999999996
No 26
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=6.9e-18 Score=156.25 Aligned_cols=122 Identities=25% Similarity=0.402 Sum_probs=89.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
.|+++|.||||||||+|+|++.+..++++|+||+.+..+.+.+.+ ..+.++||||+.+...... .+....+..+ ..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~-~Lg~~~l~~i-~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA-GLGIRFLKHL-ERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh-hHHHHHHHHH-HhC
Confidence 799999999999999999999998899999999999999998875 4699999999976432211 1222233333 346
Q ss_pred cEEEEEEeCCCCCCCCHHHH-HHHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQ-AALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~-~~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
|++++|+|++........+. ..|++++... ..++|+++|+||+|+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 99999999984321122222 2455555543 246899999999996
No 27
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.2e-18 Score=142.12 Aligned_cols=115 Identities=21% Similarity=0.294 Sum_probs=95.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
..++|+++|.+|||||-|+.+++...+.....+....++.......++. +.+||||+|+ +| ++++ .+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ------ER----yrAitSa 82 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ------ER----YRAITSA 82 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccch------hh----hccccch
Confidence 4579999999999999999999999998777766666666666666665 5699999998 44 3444 57
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+++.+-+.++|+|++.+.+|.... +|+.+++... +++++++|+||+||
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~--rWL~ELRdhad~nivimLvGNK~DL 131 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVE--RWLKELRDHADSNIVIMLVGNKSDL 131 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHH--HHHHHHHhcCCCCeEEEEeecchhh
Confidence 778889999999999988887665 8999999875 68999999999997
No 28
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.76 E-value=1.2e-17 Score=137.74 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=82.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|++|||||||++++++..+.....+..+.+.....+.+++ ..+.+|||||..+ ........+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~ 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER--------FRKSMVQHYY 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHH--------HHHhhHHHhh
Confidence 35899999999999999999998876544434333344444555555 4689999999721 1111123445
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+.+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl 121 (170)
T cd04115 74 RNVHAVVFVYDVTNMASFHSLP--SWIEECEQHSLPNEVPRILVGNKCDL 121 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 6679999999999987766554 5676665432 46899999999996
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.6e-17 Score=158.35 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=90.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..++|+++|.+|||||||+|+|++.... +.+.+++|.+.......+++..+.+|||||+..........+..++..+ .
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~-~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA-M 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH-H
Confidence 4578999999999999999999987754 6788899999988888899999999999998532211111222223233 3
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++|+|+|+++..++... .+...++. .++|+++|+||+|+
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~---~i~~~l~~--~~~piilV~NK~Dl 158 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDE---AVARVLRR--SGKPVILAANKVDD 158 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccC
Confidence 457999999999987554433 34444444 57999999999996
No 30
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=1.2e-17 Score=136.94 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=83.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|++|||||||++++.+..+.....+..+.+.....+..++. .+++|||||.. + . ......+.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~--~-~~~~~~~~~ 73 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE------R--F-RTITSSYYR 73 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH------h--H-HHHHHHHhC
Confidence 58999999999999999999988876544454444455555555553 57999999962 1 1 112234556
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~~~ii~v~d~~~~~s~~~l~--~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred cCCEEEEEEECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEEChhc
Confidence 689999999999977665544 5677666543 46899999999996
No 31
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.75 E-value=1.4e-17 Score=140.01 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=85.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|..|||||||+.++.+..+.....+..+.+.....+..++ ..+++|||||.. + .. .....+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~------~--~~-~l~~~~~ 76 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG------R--FC-TIFRSYS 76 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH------H--HH-HHHHHHh
Confidence 46899999999999999999998776433223334444444455555 457899999972 1 11 1223455
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.+++... .|+.++.....+.|+++|+||+||
T Consensus 77 ~~ad~illVfD~t~~~Sf~~~~--~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 77 RGAQGIILVYDITNRWSFDGID--RWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred cCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccc
Confidence 6789999999999998887765 688888766678999999999996
No 32
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.75 E-value=1.5e-17 Score=141.25 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=84.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
.|+++|..|||||||++++....+.....+..+.+.....+.+++ ..+++|||+|.. + .. .....+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe------~--~~-~l~~~y~~~ 72 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE------R--FN-SITSAYYRS 72 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch------h--hH-HHHHHHhcC
Confidence 589999999999999999998888544334444555556667766 467999999972 1 11 112345667
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+||
T Consensus 73 ad~iIlVfDvtd~~Sf~~l~--~w~~~i~~~~~~~~piilVgNK~DL 117 (202)
T cd04120 73 AKGIILVYDITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDC 117 (202)
T ss_pred CCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECccc
Confidence 89999999999998887765 4666665432 47999999999996
No 33
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=2e-17 Score=135.55 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=81.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
.++|+++|++|||||||++++.+..+.....+..+.+.....+.+++ ..+++|||||. +. .. .......
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~------~~--~~-~~~~~~~ 73 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ------ER--FR-TITQSYY 73 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh------HH--HH-HHHHHHh
Confidence 46899999999999999999998776543333333344455566665 36799999996 21 11 1123344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~~d~~llv~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ivv~nK~Dl 120 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVP--HWIEEVEKYGASNVVLLLIGNKCDL 120 (165)
T ss_pred ccCCEEEEEEECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEECccc
Confidence 5579999999999987765444 5677665532 47899999999996
No 34
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=1.1e-17 Score=138.03 Aligned_cols=119 Identities=33% Similarity=0.394 Sum_probs=83.1
Q ss_pred ecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEE
Q 040152 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAV 251 (293)
Q Consensus 173 vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~i 251 (293)
++|.+|||||||+|+|++..+.+++++++|.++..+...++ +..+.+|||||+.+......+.. ... ......+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~-~~~-~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLG-NQF-LAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCcc-HHH-HHHHhccCEE
Confidence 58999999999999999988777788899999988888888 88999999999854322111111 011 1223447999
Q ss_pred EEEEeCCCCC----CCCHHHHHHHHHHHhhcc--------CCCcEEEEEeccCC
Q 040152 252 LFFLDISGSC----GYSIAQQAALFHSIKSLF--------MNKPLIIVCNKTDL 293 (293)
Q Consensus 252 l~v~D~s~~~----~~~~~~~~~~l~~l~~~~--------~~~piivV~NK~Dl 293 (293)
++|+|++++. .....+.-.+..++.... .+.|+++|+||+|+
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 132 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDL 132 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhc
Confidence 9999999863 111222113344443221 36899999999996
No 35
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.74 E-value=1.7e-17 Score=142.25 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=83.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC---ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~---~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+++|||||... . ......+.+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----~----~~l~~~~~~ 72 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----G----GKMLDKYIY 72 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----H----HHHHHHHhh
Confidence 799999999999999999999887655555555566666666643 4689999999621 1 122334556
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc----CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF----MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~----~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~ad~iilV~D~t~~~s~~~~~--~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 73 GAHAVFLVYDVTNSQSFENLE--DWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHHhccccCCCceEEEEEECccc
Confidence 789999999999987765554 5666665542 24689999999996
No 36
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.74 E-value=2.1e-17 Score=135.16 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=78.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+.....+....+........++ ..+++|||||.... . .....+...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~-~~~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF--------Q-TMHASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh--------h-hhhHHHhCC
Confidence 799999999999999999998877543332222222222333333 35789999997221 1 112344556
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..++....+.|+++|+||+|+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 73 AHACILVFDVTRKITYKNLS--KWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEECccC
Confidence 79999999999876655443 677777665557999999999996
No 37
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.5e-17 Score=137.62 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=93.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||+++.++....+..........+.....+..++. .+++|||+|+ ++ ...-..++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ------er---f~ti~~sY 81 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ------ER---FRTITTAY 81 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccc------hh---HHHHHHHH
Confidence 4679999999999999999999999887665555566667777777775 4799999998 33 12334678
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
++.|+++++|||+++..+|+... .|++.+.+.. .+.|+++|+||+|+
T Consensus 82 yrgA~gi~LvyDitne~Sfeni~--~W~~~I~e~a~~~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSFENIR--NWIKNIDEHASDDVVKILVGNKCDL 129 (207)
T ss_pred HhhcCeeEEEEEccchHHHHHHH--HHHHHHHhhCCCCCcEEEeeccccc
Confidence 88899999999999988887766 5788887764 38999999999996
No 38
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.74 E-value=2.3e-17 Score=134.96 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=84.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||++++.+..+.....++++.+.....+..++. .+.+|||||.. + ... ......
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~--~~~-~~~~~~ 73 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE------R--YRA-ITSAYY 73 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH------H--HHH-HHHHHH
Confidence 358999999999999999999998877666666666666666666654 57899999972 1 111 112334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..++++++|+|++++.++.... +|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVE--RWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccc
Confidence 5579999999999877665444 5777766543 35899999999996
No 39
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.74 E-value=2.2e-17 Score=133.70 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=82.8
Q ss_pred ecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC-chhHHHHHHHHHhhccCcEE
Q 040152 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DRNIIEMCSITALAHLRSAV 251 (293)
Q Consensus 173 vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~-~~~~~e~~~~~~l~~~~d~i 251 (293)
++|.+|||||||+|++++....++.++++|.+.....+.+++..+.+|||||+.+.... ....+....+.. ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG--EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC--CCCcEE
Confidence 58999999999999999988777888999999988888888888999999998654321 111121111111 457999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 252 LFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 252 l~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++|+|++++.. ...++.++.. .++|+++|+||+|+
T Consensus 79 i~v~d~~~~~~-----~~~~~~~~~~--~~~~~iiv~NK~Dl 113 (158)
T cd01879 79 VNVVDATNLER-----NLYLTLQLLE--LGLPVVVALNMIDE 113 (158)
T ss_pred EEEeeCCcchh-----HHHHHHHHHH--cCCCEEEEEehhhh
Confidence 99999987422 1234444444 47899999999996
No 40
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.74 E-value=2.9e-17 Score=134.73 Aligned_cols=114 Identities=23% Similarity=0.243 Sum_probs=79.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+.....+..+.+........++ ..+++|||||... .. ........
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~--------~~-~~~~~~~~ 72 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER--------YR-TITTAYYR 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH--------HH-HHHHHHcc
Confidence 5899999999999999999999887544333333233333333333 4589999999721 11 11234456
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~~~~~l~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piivv~nK~Dl 118 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQ--DWSTQIKTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred CCcEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCCEEEEEECccc
Confidence 679999999999876655443 5777776543 46899999999996
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=2.7e-17 Score=134.36 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=79.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++++..+.....+..+.+.....+..++ ..+++|||||.. . .. .........
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~--~~-~~~~~~~~~ 72 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP------E--YL-EVRNEFYKD 72 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH------H--HH-HHHHHHhcc
Confidence 799999999999999999999887554444333333344444444 457899999972 1 11 122334556
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc------CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF------MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~------~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 73 TQGVLLVYDVTDRQSFEALD--SWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred CCEEEEEEECCCHHHHHhHH--HHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 79999999999977665443 5676665432 35899999999996
No 42
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=5.2e-17 Score=131.05 Aligned_cols=117 Identities=31% Similarity=0.371 Sum_probs=84.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
.+|+++|.+|+|||||+|++++.... ..+.+++|.......+.+.+.++.+|||||+.+...... .............
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-KIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH-HHHHHHHHHHHhh
Confidence 47999999999999999999988764 567788888888888888888899999999866432111 1111111223345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+..... .+.. ..+.|+++|+||+|+
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~---~~~~----~~~~~vi~v~nK~D~ 119 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLE---ILEL----PADKPIIVVLNKSDL 119 (157)
T ss_pred CCEEEEEEECCCCCCHHHHH---HHHh----hcCCCEEEEEEchhc
Confidence 79999999999865443332 2222 247999999999995
No 43
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=4.2e-17 Score=131.69 Aligned_cols=116 Identities=25% Similarity=0.298 Sum_probs=82.5
Q ss_pred eecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcE
Q 040152 172 LICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSA 250 (293)
Q Consensus 172 ~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (293)
+++|.+|||||||+|+|++.... .+..+++|.+.......+.+..+.+|||||+.+........+.... ......+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~-~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQA-ELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHH-HHHHHhCCE
Confidence 47899999999999999988643 5677888988888888888889999999999654321111111111 222344699
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 251 VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 251 il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+++|+|++++.+.... .+...++. .+.|+++|+||+|+
T Consensus 80 ii~v~d~~~~~~~~~~---~~~~~~~~--~~~piiiv~nK~D~ 117 (157)
T cd01894 80 ILFVVDGREGLTPADE---EIAKYLRK--SKKPVILVVNKVDN 117 (157)
T ss_pred EEEEEeccccCCccHH---HHHHHHHh--cCCCEEEEEECccc
Confidence 9999999875444332 23333433 36899999999996
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.73 E-value=2.7e-17 Score=134.04 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=79.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+. ..++.|+.+.....+..++. .+.+|||||..... .....+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~~ 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT---------AMRDLYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCccccc---------hHHHHHhh
Confidence 58999999999999999999987764 33444444444455555554 46889999973211 11123445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 118 (163)
T cd04136 72 NGQGFVLVYSITSQSSFNDLQ--DLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 679999999999977665443 455555443 247899999999996
No 45
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.73 E-value=4.1e-17 Score=134.28 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=82.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||++++.+..+.....+..+.+.....+..++ ..+.+|||||. ++ +... ...+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~--~~~~-~~~~~ 74 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ------ES--FRSI-TRSYY 74 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------HH--HHHH-HHHHh
Confidence 36899999999999999999999887654444444444444455554 46899999996 11 1111 12334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.+++... .|+.+++.. ..+.|+++|+||+|+
T Consensus 75 ~~~d~il~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 75 RGAAGALLVYDITRRETFNHLT--SWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred ccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECccc
Confidence 5579999999999877665444 677777653 257899999999996
No 46
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=2.5e-17 Score=139.71 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=80.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-C--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
.+|+++|.+|||||||++++.+..+.....+....+.....+.++ + ..+.+|||||.... . .....+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-----~----~~~~~~~ 71 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-----G----GMTRVYY 71 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-----h----hhHHHHh
Confidence 379999999999999999999887754444433334444455554 3 35799999997211 1 1123445
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-----cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-----~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+.++... ..+.|+++|+||+|+
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~--~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVL--KWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 6689999999999988776654 455555432 246899999999996
No 47
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=3.1e-17 Score=136.66 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=81.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+.. .+.+|........+..++. .+++|||||.... . .....+..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~-----~----~~~~~~~~ 71 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY-----D----NVRPLCYP 71 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhh-----h----hcchhhcC
Confidence 479999999999999999999887753 3333333333334445443 5789999997211 0 11123455
Q ss_pred cCcEEEEEEeCCCCCCCCHH-HHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIA-QQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~-~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++... . .|+.+++....+.|+++|+||+||
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~--~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLK--KWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHH--HHHHHHHHHCCCCCEEEEEEChhh
Confidence 67999999999999888753 3 577777766568999999999996
No 48
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.73 E-value=3.9e-17 Score=134.22 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=82.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|++|||||||++++.+..+.....+..+.+.....+.+++. .+++|||||... ... ......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--------~~~-~~~~~~ 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER--------FRT-ITTAYY 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH--------HHH-HHHHHh
Confidence 468999999999999999999998876544444444444444555553 579999999621 111 122344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.+++... +|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~ad~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 74 RGAMGIILVYDITDEKSFENIR--NWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred CCCCEEEEEEECcCHHHHHhHH--HHHHHHHHhCCCCCcEEEEEECccc
Confidence 5679999999999877765544 5676666532 46899999999996
No 49
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.73 E-value=4.4e-17 Score=132.74 Aligned_cols=113 Identities=20% Similarity=0.279 Sum_probs=82.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+.....+..+.+.....+.+++ ..+++|||||.. + .. .........
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~--~~-~~~~~~~~~ 72 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE------R--FR-SITSSYYRG 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH------H--HH-HHHHHHhCC
Confidence 799999999999999999999887655555555555555566655 468899999962 1 11 122334455
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+++... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~--~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 73 AVGALLVYDITNRESFENLK--NWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEEchhc
Confidence 79999999999977665444 4666665432 57999999999995
No 50
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.73 E-value=4.1e-17 Score=132.91 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=79.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec----CceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK----YLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~----~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
+|+++|.+|+|||||++++++..+.....+..+.+.....+.++ ...+++|||||.. . .. .....+.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~--~~-~~~~~~~ 72 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE------E--FD-AITKAYY 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH------H--HH-HhHHHHh
Confidence 79999999999999999999887754333333333333344443 3468999999962 1 11 1123345
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.....+.|+++|+||+|+
T Consensus 73 ~~~~~~v~v~d~~~~~s~~~l~--~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 73 RGAQACILVFSTTDRESFEAIE--SWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred cCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEEChhc
Confidence 5679999999999977665443 566666655568999999999996
No 51
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.73 E-value=1.2e-17 Score=145.59 Aligned_cols=121 Identities=32% Similarity=0.537 Sum_probs=93.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCce-EEEEeCCCCCCCCCCchhHHHHHHHHHhhc-
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR-YQVIDTPGILDRPFEDRNIIEMCSITALAH- 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~-~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~- 246 (293)
..|.++|.||+|||||+|+|+.+++.+++|+|||..+..+.+.+++.. +.+-|.||+++.....+. .....++|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG----lG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG----LGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCc----ccHHHHHHH
Confidence 478899999999999999999999999999999999999999998875 999999999986544432 11222332
Q ss_pred -cCcEEEEEEeCCCCCCCCHHHHHHHH-HHH---hhccCCCcEEEEEeccCC
Q 040152 247 -LRSAVLFFLDISGSCGYSIAQQAALF-HSI---KSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 -~~d~il~v~D~s~~~~~~~~~~~~~l-~~l---~~~~~~~piivV~NK~Dl 293 (293)
.++.++||+|.+.+.-.+..++++++ .++ .+...++|.++|+||+|+
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~ 324 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL 324 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence 25899999999987444555444332 233 333468999999999996
No 52
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.73 E-value=3.2e-17 Score=136.09 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=80.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHH-HHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSI-TALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~-~~l~ 245 (293)
.+|+++|.+|||||||++++....+. ..+.+|........+..++ ..+++|||||.... ..+ ....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY----------DRLRPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccch----------hhhhhhhc
Confidence 47999999999999999999988874 3344444333333445555 45789999998321 111 1234
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++..... .|+.++.....+.|+++|+||+|+
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~-~w~~~i~~~~~~~piilvgnK~Dl 117 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDL 117 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEECHhh
Confidence 45799999999999877765532 366666654457899999999996
No 53
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.3e-17 Score=155.36 Aligned_cols=122 Identities=22% Similarity=0.280 Sum_probs=90.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHH--
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA-- 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~-- 243 (293)
..++|+++|.||||||||+|+|++.... +++.++||.+.....+.+++..+.+|||||+...............+.+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4679999999999999999999998754 7788999999988888888889999999998543221111111122221
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++++.++... .++..+.. .+.|+|+|+||+|+
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~---~~~~~~~~--~~~piIiV~NK~Dl 334 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQ---RVLSMVIE--AGRALVLAFNKWDL 334 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccc
Confidence 23457999999999986543322 45555544 57999999999996
No 54
>PRK00089 era GTPase Era; Reviewed
Probab=99.73 E-value=6.3e-17 Score=145.08 Aligned_cols=120 Identities=27% Similarity=0.401 Sum_probs=85.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...|+++|.||||||||+|+|++..+. +++.+.||+....+....++.++.++||||+.+........+...+... ..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~-~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS-LK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH-Hh
Confidence 457999999999999999999999876 6778888888777776666678999999998654311111111122222 34
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|+++..+ ... ..++..+.. .+.|+++|+||+|+
T Consensus 84 ~~D~il~vvd~~~~~~--~~~-~~i~~~l~~--~~~pvilVlNKiDl 125 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGD-EFILEKLKK--VKTPVILVLNKIDL 125 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhH-HHHHHHHhh--cCCCEEEEEECCcC
Confidence 5799999999998432 222 234444443 36899999999996
No 55
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.73 E-value=4.5e-17 Score=137.95 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=81.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|++|||||||++++.+..+.....+..+.+.....+.+++ ..+.+|||||.... . .....+.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----~----~~~~~~~ 76 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF-----R----TITSTYY 76 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH-----H----HHHHHHh
Confidence 56899999999999999999998877543333333334444444444 35789999997211 1 1113344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.......|+++|+||+|+
T Consensus 77 ~~a~~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 77 RGTHGVIVVYDVTNGESFVNVK--RWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred CCCcEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccc
Confidence 5579999999999977665443 677777765567899999999996
No 56
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=4.7e-17 Score=153.47 Aligned_cols=118 Identities=25% Similarity=0.324 Sum_probs=88.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
+|+++|.+|||||||+|+|++.... +.+.+++|++...+...+++..+.+|||||+..........+..++..++ ..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~-~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI-EEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH-hhC
Confidence 4899999999999999999998754 67889999999999999999999999999985432211222333333343 346
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|++++|+|+++.. ...+. .+.+.++. .++|+++|+||+|+
T Consensus 80 d~vl~vvD~~~~~--~~~d~-~i~~~l~~--~~~piilVvNK~D~ 119 (429)
T TIGR03594 80 DVILFVVDGREGL--TPEDE-EIAKWLRK--SGKPVILVANKIDG 119 (429)
T ss_pred CEEEEEEeCCCCC--CHHHH-HHHHHHHH--hCCCEEEEEECccC
Confidence 9999999998743 33321 34444444 47899999999995
No 57
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.73 E-value=5.6e-17 Score=133.05 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=78.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccc-eeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFT-TKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~t-t~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
.+|+++|++|||||||++++.+..+... ++.| ..+.....+..++. .+.+|||||.. + .. .......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~--~~-~~~~~~~ 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD-CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE------R--FR-AVTRSYY 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCcccceeEEEEEEEECCEEEEEEEEECCCcH------H--HH-HHHHHHh
Confidence 5899999999999999999998877433 3332 22333333444443 57999999972 1 11 1123344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~~~~~~ilv~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 73 RGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccc
Confidence 5679999999999987766554 5666654432 46899999999996
No 58
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=4.9e-17 Score=132.63 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=79.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+ ...++.++.........+++. .+++|||||..+. .. ....+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~----~~~~~~~ 72 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF-----SA----MREQYMR 72 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-----hH----HHHHHHh
Confidence 5899999999999999999998766 344445554444444555553 5789999997322 11 1223445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 73 ~~~~~ilv~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piiiv~NK~Dl 119 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVD--KFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHH--HHHHHHHHHhCCCCCCEEEEeeCccc
Confidence 579999999999977665444 455555442 247899999999996
No 59
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.73 E-value=4.8e-17 Score=135.94 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=82.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
...+|+++|.+|||||||++++.+..+.. .+.+|........+..++. .+++|||+|.... ..+ ..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~-~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~----------~~~~~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------DNVRPL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC-ccCCceeeeeEEEEEECCEEEEEEEEECCCchhh----------Hhhhhh
Confidence 34689999999999999999999887743 3333333333334444443 5899999997211 112 23
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... -.|+.++.....+.|+++|+||+||
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~-~~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVL-KKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCEEEEeEChhh
Confidence 455679999999999988876541 1577777665568999999999996
No 60
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=7e-17 Score=152.59 Aligned_cols=119 Identities=26% Similarity=0.305 Sum_probs=87.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
++|+++|.+|||||||+|+|++.... +.+.+++|.+...+...+++..+.+|||||+.+........+..+...+ ...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~-~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELA-IEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHH-HHh
Confidence 57999999999999999999998764 6778999999999999999999999999999652211111222223333 344
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+..... +...++. .+.|+++|+||+|+
T Consensus 81 ad~il~vvd~~~~~~~~~~~---~~~~l~~--~~~piilv~NK~D~ 121 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEE---IAKILRK--SNKPVILVVNKVDG 121 (435)
T ss_pred CCEEEEEEECCCCCCHHHHH---HHHHHHH--cCCcEEEEEECccC
Confidence 79999999998854332222 2333333 37899999999994
No 61
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=2.1e-17 Score=128.72 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=93.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHH-HHHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCS-ITALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~-~~~l~ 245 (293)
++.+|+|.+|||||||+-++....+.-+....+..+.....++++|. .++||||+|+ ++ +.. ...++
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq------Er----Frtitstyy 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ------ER----FRTITSTYY 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccH------HH----HHHHHHHHc
Confidence 46789999999999999999988876555555566777888888875 4799999997 33 233 35677
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+..+++++|+|+++..+|.... +|+++++..+...|-++|+||+|+
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~--rWLeei~~ncdsv~~vLVGNK~d~ 124 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVK--RWLEEIRNNCDSVPKVLVGNKNDD 124 (198)
T ss_pred cCCceEEEEEECcchhhhHhHH--HHHHHHHhcCccccceecccCCCC
Confidence 8889999999999999888776 899999998888999999999995
No 62
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=1.1e-16 Score=131.13 Aligned_cols=119 Identities=30% Similarity=0.309 Sum_probs=85.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHH----HHHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM----CSIT 242 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~----~~~~ 242 (293)
..+|+++|.+|+|||||+|++++.... ..+.+++|.......+..++..+.+|||||+.+...... .++. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEE-GIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhc-cHHHHHHHHHHH
Confidence 458999999999999999999988744 566778888877777788888899999999875432111 1111 1122
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+
T Consensus 81 -~~~~~d~vi~v~d~~~~~~~~~~---~~~~~~~~--~~~~~iiv~nK~Dl 125 (174)
T cd01895 81 -AIERADVVLLVIDATEGITEQDL---RIAGLILE--EGKALVIVVNKWDL 125 (174)
T ss_pred -HHhhcCeEEEEEeCCCCcchhHH---HHHHHHHh--cCCCEEEEEecccc
Confidence 23456999999999987654332 33444433 46899999999996
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=7.4e-17 Score=131.41 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=79.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||+++|.+..+.....+..+.+.....+..++ ..+++|||||+.. +.. ........
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~-~~~~~~~~ 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER--------FRS-VTRSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH--------HHH-hHHHHhcC
Confidence 799999999999999999998887654444444444444444444 3579999999721 111 12334456
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..++... .+.|+++|+||+|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D~ 117 (161)
T cd04113 73 AAGALLVYDITNRTSFEALP--TWLSDARALASPNIVVILVGNKSDL 117 (161)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEEchhc
Confidence 79999999999987765544 5666655432 57899999999996
No 64
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.72 E-value=7.9e-17 Score=133.77 Aligned_cols=115 Identities=20% Similarity=0.279 Sum_probs=79.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec------------CceEEEEeCCCCCCCCCCchhH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------YLRYQVIDTPGILDRPFEDRNI 235 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~------------~~~~~iiDTpG~~~~~~~~~~~ 235 (293)
..+|+++|.+|||||||++++.+..+.....+..+.+.....+.+. ...+.+|||||. ++
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~-- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------ER-- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh------HH--
Confidence 3589999999999999999999887754433333333333333332 246899999996 21
Q ss_pred HHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 236 IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 236 ~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+. .....+...+|++++|+|++++.++.... .|+.++... ..+.|+++|+||+|+
T Consensus 76 ~~-~~~~~~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 76 FR-SLTTAFFRDAMGFLLIFDLTNEQSFLNVR--NWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred HH-HHHHHHhCCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 11 11233445679999999999977766554 567766543 246899999999996
No 65
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=6.1e-17 Score=132.42 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=79.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++....+. ..++.|+.+.....+..++. .+++|||||..... .....+..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~~ 71 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------AMRDLYMK 71 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEEEEEEEEECCCcccch---------hHHHHHHh
Confidence 48999999999999999999977653 34445555444445555554 46799999973211 11233455
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.+++... +|+..+... ..+.|+++|+||+|+
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 118 (164)
T cd04175 72 NGQGFVLVYSITAQSTFNDLQ--DLREQILRVKDTEDVPMILVGNKCDL 118 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 579999999999877665544 455555432 257899999999996
No 66
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=1.3e-16 Score=129.89 Aligned_cols=111 Identities=21% Similarity=0.149 Sum_probs=73.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc---ccccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 170 TILICGYPNVGKSSFMNKITRADV---DVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~---~~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
.|+++|.+|||||||+|+|++... .....+++|.+.......+. +..+++|||||+ ++ .. .......
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~------~~--~~-~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH------EK--FI-KNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh------HH--HH-HHHHhhh
Confidence 689999999999999999997532 22234566777666666665 678999999997 21 11 1122334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++........ .+..+... ...|+++|+||+|+
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~---~~~~~~~~-~~~~~ilv~NK~Dl 116 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTRE---HLEILELL-GIKRGLVVLTKADL 116 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHH---HHHHHHHh-CCCcEEEEEECccc
Confidence 5579999999998732222222 22222221 23499999999996
No 67
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.72 E-value=2.3e-17 Score=135.10 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=77.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++.+..+. ..+++++.........+++. .+++|||||....... ........
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~ 71 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIRW 71 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHHh
Confidence 4899999999999999999876663 34555544444444455544 5789999998531100 01122345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+++... .|+..+... ..+.|+++|+||+|+
T Consensus 72 ~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl 118 (165)
T cd04146 72 ADGFVLVYSITDRSSFDEIS--QLKQLIREIKKRDREIPVILVGNKADL 118 (165)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEECCch
Confidence 79999999999987776554 344444332 247999999999996
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.72 E-value=7.3e-17 Score=130.98 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=77.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++++..+.. .+..|+.+........++. .+.+|||||.... . .....+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~----~l~~~~~~ 71 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----S----AMRDQYMR 71 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC-CcCCcchheEEEEEEECCEEEEEEEEECCCCcch-----H----HHHHHHHh
Confidence 479999999999999999999887643 3334444444444555553 4788999997321 1 11223445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~--~~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIH--TYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 579999999999876554433 445554433 247899999999996
No 69
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.7e-17 Score=134.98 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=86.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
...+++++|..|||||||+-++....|.....+.+...+....+..++ .++.||||+|+- + +.++ ..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE------R----y~slapM 73 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE------R----YHSLAPM 73 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcc------c----ccccccc
Confidence 456899999999999999999999888654344444444444455554 568899999983 2 1222 34
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC-CCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM-NKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~-~~piivV~NK~Dl 293 (293)
+++.++++|+|||+++..+|...+ .|+++++...+ +.-+.+|+||+||
T Consensus 74 YyRgA~AAivvYDit~~~SF~~aK--~WvkeL~~~~~~~~vialvGNK~DL 122 (200)
T KOG0092|consen 74 YYRGANAAIVVYDITDEESFEKAK--NWVKELQRQASPNIVIALVGNKADL 122 (200)
T ss_pred eecCCcEEEEEEecccHHHHHHHH--HHHHHHHhhCCCCeEEEEecchhhh
Confidence 566789999999999998888776 78999987543 4556689999997
No 70
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=1e-16 Score=138.66 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=81.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||++++.+..+... +..|........+..++ ..++||||+|.. + +. .....+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~-y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e------~--~~-~~~~~~ 81 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPET-YVPTVFENYTAGLETEEQRVELSLWDTSGSP------Y--YD-NVRPLC 81 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCC-cCCceeeeeEEEEEECCEEEEEEEEeCCCch------h--hH-HHHHHH
Confidence 346899999999999999999998877543 33333222233344444 358999999972 1 11 111334
Q ss_pred hccCcEEEEEEeCCCCCCCCHH-HHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIA-QQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~-~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.+|... . .|+.++.....+.|+++|+||+||
T Consensus 82 ~~~ad~vIlVyDit~~~Sf~~~~~--~w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 82 YSDSDAVLLCFDISRPETVDSALK--KWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred cCCCcEEEEEEECCChHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccc
Confidence 5668999999999998887653 3 577777765567899999999996
No 71
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=7.9e-17 Score=131.10 Aligned_cols=112 Identities=20% Similarity=0.284 Sum_probs=75.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++++..+....+. .|.+.....+...+..+++|||||.... + .....+...+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~----~-----~~~~~~~~~~d 70 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKY----R-----GLWEHYYKNIQ 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhh----H-----HHHHHHHccCC
Confidence 489999999999999999998754333322 2333334445566778999999997321 1 11123345679
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc----cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~----~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++.... .++..+... ..+.|+++|+||+|+
T Consensus 71 ~ii~v~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 71 GIIFVIDSSDRLRLVVVK--DELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred EEEEEEeCCcHHHHHHHH--HHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 999999999876554433 344443221 147999999999996
No 72
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.71 E-value=6.6e-17 Score=134.36 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=81.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||+.++....+... +..|........+..++ ..+++|||+|...... ....+..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~-~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~---------~~~~~~~ 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR---------LRPLSYR 71 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-CCCcceeeeEEEEEECCEEEEEEEEECCCCccccc---------cchhhcC
Confidence 3799999999999999999998887543 33333333333344444 4579999999833211 0122445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.+|..... .|+.+++....+.|+++|+||+||
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~-~w~~~i~~~~~~~piilvgnK~Dl 117 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLK-KWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeChhh
Confidence 6799999999999988876521 577777655467999999999996
No 73
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=6.9e-17 Score=138.94 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=82.4
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec--CceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
....+|+++|.+|||||||++++....+.....+....+.....+..+ ...+.+|||||..... .....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh---------hhhHH
Confidence 456799999999999999999998877653333322222222233333 3578999999973211 11123
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...+|++|+|||++++.++.... .|+.++.....+.|+++|+||+|+
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~--~w~~~i~~~~~~~piilvgNK~Dl 129 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDV 129 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEEchhh
Confidence 455679999999999987776554 678877765568999999999996
No 74
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.71 E-value=8e-17 Score=131.49 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=78.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++....+... +..|..+.....+..++. .+++|||||..... .....+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~~ 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------SMRDLYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEECCEEEEEEEEECCCccccc---------chHHHHHh
Confidence 4799999999999999999998877543 333333344445555554 47899999973221 11123445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 72 ~ad~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIK--PMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred hCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 579999999999977665443 4555554432 47999999999996
No 75
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.71 E-value=1.2e-16 Score=130.68 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=81.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++.+..+.....+....+.....+..++. .+++|||||.... . .....+...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~-~~~~~~~~~ 72 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY--------Q-TITKQYYRR 72 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH--------H-hhHHHHhcC
Confidence 7999999999999999999988876444443333344445555553 5789999996211 0 112334556
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+++... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~~~~i~v~d~~~~~sf~~~~--~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 73 AQGIFLVYDISSERSYQHIM--KWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred CcEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccc
Confidence 79999999999987776654 5677665543 36899999999996
No 76
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=6.3e-17 Score=136.02 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=77.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||+++|.+..+.. .+++|+.+........++. .+++|||||.... . .....+...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~----~~~~~~~~~ 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE-TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY-----T----ALRDQWIRE 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchHhhEEEEEEECCEEEEEEEEECCCchhh-----H----HHHHHHHHh
Confidence 48999999999999999999877743 3444443333344445554 4789999997211 1 111234455
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc----cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~----~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 71 ad~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilvgNK~Dl 118 (190)
T cd04144 71 GEGFILVYSITSRSTFERVE--RFREQIQRVKDESAADVPIMIVGNKCDK 118 (190)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHHhcccCCCCCEEEEEEChhc
Confidence 79999999999977665544 455555432 246899999999996
No 77
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1e-16 Score=134.79 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=78.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCcccee-eeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTK-SLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~-~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+|+++|.+|||||||++++.+..+....+..|+. +.....+.+++ ..++||||||. ++ +. .....+..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~--~~-~~~~~~~~ 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ------ER--FR-SVTHAYYR 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc------HH--HH-HhhHHHcc
Confidence 7999999999999999999998876544443332 33223344444 36899999996 21 11 11233445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~ad~~i~v~D~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~NK~Dl 118 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIR--AWLTEIKEYAQEDVVIMLLGNKADM 118 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEEcccc
Confidence 579999999999976655443 5666666543 36899999999996
No 78
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=8.1e-17 Score=132.45 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=77.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEE--Eec--CceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHT--DYK--YLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~--~~~--~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
++|+++|.+|||||||++++....+.....+ |.+...... ..+ ...+.+|||||....... ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------~~~~ 69 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA--TLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL---------RDGY 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCCChhhccc---------cHHH
Confidence 3799999999999999999987765432222 222222222 222 346899999998432111 1223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+.++.....+.|+++|+||+|+
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCcEEEEEEchhc
Confidence 45579999999999977665443 577777765558999999999996
No 79
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.71 E-value=7.5e-17 Score=133.09 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=78.8
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
|+++|.+|||||||++++.+..+.... ..+...........++. .+++|||||..... .........+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~~ 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY-VPTVFENYSADVEVDGKPVELGLWDTAGQEDYD---------RLRPLSYPDT 70 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC-CCcEEeeeeEEEEECCEEEEEEEEECCCCcccc---------hhchhhcCCC
Confidence 589999999999999999998875433 23333333344445554 47999999973221 0112234457
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 71 d~~ilv~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 71 DVFLICFSVDSPASFENVKE-KWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEecChhh
Confidence 99999999999877654431 477777765568999999999996
No 80
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.71 E-value=2.4e-17 Score=127.70 Aligned_cols=114 Identities=22% Similarity=0.225 Sum_probs=74.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc----cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD----VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~----~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
+|+|+|.+|||||||+++|.+.... .......+..............+.+||++|........ ....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------~~~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH---------QFFL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS---------HHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc---------cchh
Confidence 5899999999999999999988765 12222233332233333333458999999983211111 1113
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHH-HHHHHHHhhccCCCcEEEEEeccC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQ-AALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~-~~~l~~l~~~~~~~piivV~NK~D 292 (293)
..+|++++|+|++++.+++...+ +.|+..+.....+.|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 34699999999999877665433 357777776556799999999998
No 81
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.71 E-value=1.3e-16 Score=131.71 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=79.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+.....|....+.....+..++ ..+++|||||.. + .. .........
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~--~~-~~~~~~~~~ 72 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE------R--FK-CIASTYYRG 72 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH------H--HH-hhHHHHhcC
Confidence 699999999999999999999887544434334444445555554 358999999972 1 11 111334556
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-c-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL-F-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+.++... . ...|+++|+||+|+
T Consensus 73 ad~~ilv~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 73 AQAIIIVFDLTDVASLEHTR--QWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred CCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 79999999999876666554 577765432 2 24679999999996
No 82
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.71 E-value=1e-16 Score=132.17 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=78.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++.+..+. . + .+|.+......++.+..+++|||||..... .....+...+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~-~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~---------~~~~~~~~~ad 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q-P-IPTIGFNVETVEYKNLKFTIWDVGGKHKLR---------PLWKHYYLNTQ 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-C-c-CCcCceeEEEEEECCEEEEEEECCCChhcc---------hHHHHHhccCC
Confidence 5899999999999999999987553 2 2 334544455667777889999999973211 11223445579
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 69 ~ii~V~D~s~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 112 (169)
T cd04158 69 AVVFVVDSSHRDRVSEAH--SELAKLLTEKELRDALLLIFANKQDV 112 (169)
T ss_pred EEEEEEeCCcHHHHHHHH--HHHHHHhcChhhCCCCEEEEEeCcCc
Confidence 999999999976665443 455555432 245899999999996
No 83
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=1.4e-16 Score=131.31 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=77.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||++++....+. ...| |.+.........+..+++|||||.. + +. .....+..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~--t~g~~~~~~~~~~~~~~l~Dt~G~~------~--~~-~~~~~~~~ 75 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVTYKNVKFNVWDVGGQD------K--IR-PLWRHYYT 75 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccC--CcccceEEEEECCEEEEEEECCCCH------H--HH-HHHHHHhc
Confidence 3568999999999999999999876653 2222 2233334455566789999999972 1 11 11233455
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhh-c-cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKS-L-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~-~-~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .++.++.. . ..+.|+++|+||+|+
T Consensus 76 ~a~~ii~v~D~t~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 122 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEAR--QELHRIINDREMRDALLLVFANKQDL 122 (168)
T ss_pred cCCEEEEEEeCCchhhHHHHH--HHHHHHhcCHhhcCCcEEEEEECcCC
Confidence 679999999999977665443 44444332 1 246899999999996
No 84
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.71 E-value=8.6e-17 Score=132.07 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=76.0
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcE
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSA 250 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (293)
|+++|.+|||||||++++.+..+.....| |.+.....+..++..+.+|||||..... .....+.+.+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p--t~g~~~~~i~~~~~~l~i~Dt~G~~~~~---------~~~~~~~~~ad~ 70 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP--TTGFNSVAIPTQDAIMELLEIGGSQNLR---------KYWKRYLSGSQG 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc--cCCcceEEEeeCCeEEEEEECCCCcchh---------HHHHHHHhhCCE
Confidence 79999999999999999998766432222 2222233455666789999999973211 111234556799
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 251 VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 251 il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+++|+|++++.++.... .|+.++.....+.|+++|+||+|+
T Consensus 71 ii~V~D~t~~~s~~~~~--~~l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 71 LIFVVDSADSERLPLAR--QELHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred EEEEEECCCHHHHHHHH--HHHHHHHhCCCCCcEEEEEeCcCC
Confidence 99999999976544333 455555433368999999999996
No 85
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.5e-17 Score=131.12 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=92.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
+..+++++|..+|||||||+++....+.....+....++....+.+.|+ ++++|||+|+ |+ ...-+.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ------ER---FrslipsY 91 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ------ER---FRSLIPSY 91 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH------HH---Hhhhhhhh
Confidence 3479999999999999999999999887666666667777777777776 5799999998 43 12333567
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-C-CCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-M-NKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~-~~piivV~NK~Dl 293 (293)
.+.+++++.|+|+++..+|...+ +|++.+.... . +.-+++|+||.||
T Consensus 92 ~Rds~vaviVyDit~~~Sfe~t~--kWi~dv~~e~gs~~viI~LVGnKtDL 140 (221)
T KOG0094|consen 92 IRDSSVAVIVYDITDRNSFENTS--KWIEDVRRERGSDDVIIFLVGNKTDL 140 (221)
T ss_pred ccCCeEEEEEEeccccchHHHHH--HHHHHHHhccCCCceEEEEEcccccc
Confidence 77789999999999998888776 7888876542 3 3567899999997
No 86
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.71 E-value=1.3e-16 Score=134.22 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=79.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHH-HHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSI-TAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~-~~l 244 (293)
..+|+++|.+|||||||++++....+... +..|..+.....+..++ ..+++|||||.. + + ..+ ..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e------~--~--~~l~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKE-YIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE------E--Y--DRLRTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcC-CCCceEeeeEEEEEECCEEEEEEEEECCCch------h--h--hhhhhhh
Confidence 35899999999999999999998877433 32332222222334444 357999999982 1 1 112 234
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+.++.....+.|+++|+||+||
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~-~w~~~i~~~~~~~piilvgNK~DL 119 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRH-KWHPEVCHHCPNVPILLVGTKKDL 119 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEeChhh
Confidence 556899999999999888776542 366666554468999999999996
No 87
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.71 E-value=2e-16 Score=129.48 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=78.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---CceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
+.|+++|.+|+|||||+|+|++..+.....+++|.+......... +..+.+|||||+.. ... ......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~--------~~~-~~~~~~ 71 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA--------FTN-MRARGA 71 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH--------HHH-HHHHHH
Confidence 369999999999999999999888766556667776665566654 56899999999721 111 112233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++....... ..+..+.. .+.|+++|+||+|+
T Consensus 72 ~~~d~il~v~d~~~~~~~~~~---~~~~~~~~--~~~p~ivv~NK~Dl 114 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTI---EAIKLAKA--ANVPFIVALNKIDK 114 (168)
T ss_pred hhcCEEEEEEECCCCccHHHH---HHHHHHHH--cCCCEEEEEEceec
Confidence 457999999999985422222 23333333 47899999999996
No 88
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=1.2e-16 Score=134.39 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=80.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceee-eeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKS-LFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~-~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+|+++|.+|||||||++++.+..+....+..|... .....+..++. .+.+|||||.... . .....+..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~----~~~~~~~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY-----E----AMSRIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh-----h----hhhHhhcC
Confidence 79999999999999999999988765445444332 22344555554 4679999997221 1 11123445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.....+.|+++|+||+|+
T Consensus 73 ~~d~iilv~d~~~~~s~~~~~--~~~~~i~~~~~~~piilv~nK~Dl 117 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAK--FWVKELQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHH--HHHHHHHhcCCCCCEEEEEEcccc
Confidence 679999999999876654433 577777665457999999999996
No 89
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.70 E-value=1.4e-16 Score=137.05 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=80.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~l~ 245 (293)
.+|+++|.+|||||||++++.+..+... +.+|........+..++. .+.+|||+|... + ..+ ...+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~-y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~--------~--~~l~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGS-YVPTVFENYTASFEIDKRRIELNMWDTSGSSY--------Y--DNVRPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCc-cCCccccceEEEEEECCEEEEEEEEeCCCcHH--------H--HHHhHHhc
Confidence 4799999999999999999998877543 333333333334455443 578999999721 1 112 2344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|||++++.++..... .|..++.....+.|+++|+||+||
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~-~w~~~~~~~~~~~piiLVgnK~DL 117 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLK-KWQGETQEFCPNAKVVLVGCKLDM 117 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEECccc
Confidence 56799999999999877766532 466666655568999999999996
No 90
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=1.4e-16 Score=133.79 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=78.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||++++.+..+.. .+..|........+..++. .+++|||||..+.. .....+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~l~~~~ 73 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS---------AMRDQY 73 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch---------hhHHHH
Confidence 45799999999999999999999887643 2333333333334444443 47899999983321 111234
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.+++... .|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~Dl 122 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIA--SFREQILRVKDKDRVPMILVGNKCDL 122 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 55679999999999987766554 4555554432 47899999999996
No 91
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.70 E-value=1.6e-16 Score=132.93 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=77.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-C--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+|+++|.+|||||||++++.+..+... +..++.......+... + ..+++|||||... .. ........
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----~~----~~~~~~~~ 71 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEE-YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----YD----RLRPLSYP 71 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCC-CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----HH----HHHHHhCC
Confidence 799999999999999999998887533 3333333233334443 2 3579999999721 11 11122345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 72 ~ad~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 117 (187)
T cd04132 72 DVDVLLICYAVDNPTSLDNVED-KWFPEVNHFCPGTPIMLVGLKTDL 117 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeChhh
Confidence 5799999999999877654432 466666544457899999999996
No 92
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.70 E-value=1.6e-16 Score=134.74 Aligned_cols=113 Identities=20% Similarity=0.206 Sum_probs=79.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-----C--ceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-----Y--LRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-----~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
+|+++|.+|||||||++++.+..+.....+....+.....+.++ + ..+++|||+|... . . ....
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----~---~-~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-----V---K-STRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----H---H-HHHH
Confidence 79999999999999999999988754443333323333444442 2 3589999999721 1 1 1123
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--------------------cCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--------------------FMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--------------------~~~~piivV~NK~Dl 293 (293)
.+...+|++++|+|++++.++.... .|+.++... ..+.|+++|+||+||
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~--~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl 141 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQ--RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQ 141 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHH--HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccc
Confidence 4556689999999999988877665 677776431 136899999999996
No 93
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.70 E-value=1.9e-16 Score=130.30 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=77.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++.+. +.. .+ ..|.+.....+.+++..+++|||||... .. .....+...+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~-~~-~~t~g~~~~~~~~~~~~~~i~D~~G~~~--------~~-~~~~~~~~~a~ 68 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPK-KV-APTVGFTPTKLRLDKYEVCIFDLGGGAN--------FR-GIWVNYYAEAH 68 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCc-cc-cCcccceEEEEEECCEEEEEEECCCcHH--------HH-HHHHHHHcCCC
Confidence 4899999999999999999976 322 11 2233444556667778899999999721 11 11234456689
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++.... .++..+... ..+.|+++|+||+|+
T Consensus 69 ~ii~V~D~s~~~s~~~~~--~~l~~l~~~~~~~~~piliv~NK~Dl 112 (167)
T cd04161 69 GLVFVVDSSDDDRVQEVK--EILRELLQHPRVSGKPILVLANKQDK 112 (167)
T ss_pred EEEEEEECCchhHHHHHH--HHHHHHHcCccccCCcEEEEEeCCCC
Confidence 999999999976554433 456655432 247899999999996
No 94
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.70 E-value=1.5e-16 Score=129.83 Aligned_cols=112 Identities=17% Similarity=0.240 Sum_probs=76.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++.+..+.. .+..++.+........++ ..+.+|||||..+.. .....+...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~~~ 71 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS---------AMRDQYMRT 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch---------HHHHHHHhh
Confidence 79999999999999999999887643 333344444334444444 357899999973321 111233445
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|...+... ..+.|+++|+||+|+
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~pii~v~nK~Dl 117 (164)
T smart00173 72 GEGFLLVYSITDRQSFEEIK--KFREQILRVKDRDDVPIVLVGNKCDL 117 (164)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 79999999999976665444 344444332 136899999999996
No 95
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.7e-16 Score=128.43 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=88.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeee--eEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSL--FVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~--~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
..++++++|..|||||+|+-+++...|..... .|.++ ....+..++ .+++||||+|+ ++ ...-..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~~id~k~IKlqiwDtaGq------e~---frsv~~ 73 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMVTIDGKQIKLQIWDTAGQ------ES---FRSVTR 73 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEEEEcCceEEEEEEecCCc------HH---HHHHHH
Confidence 35689999999999999999999998864333 34444 344445555 46899999998 32 112335
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
.++..+.++|+|+|++.+.+|+... .||.+++.. ..+..+++++||+||
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~--~wL~D~rq~~~~NmvImLiGNKsDL 123 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLT--SWLEDARQHSNENMVIMLIGNKSDL 123 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHH--HHHHHHHHhcCCCcEEEEEcchhhh
Confidence 6777788999999999999999887 678888776 368889999999997
No 96
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.70 E-value=1.4e-16 Score=132.05 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=78.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||+.++.+..+... +..|........+..++ ..+++|||||..... ........
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~~ 71 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD---------RLRPLSYP 71 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCc-CCCcceeeeEEEEEECCEEEEEEEEECCCchhhh---------hhhhhhcC
Confidence 3799999999999999999998777433 33333333333344444 457899999973211 11122344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++..... .|+..+.....+.|+++|+||+||
T Consensus 72 ~~d~~ilv~d~~~~~sf~~~~~-~~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 72 QTDVFLICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEeeChhh
Confidence 5799999999999877765432 356555544457999999999996
No 97
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.70 E-value=2.6e-16 Score=126.66 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=79.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec--CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||+|++.+..+.....+..+.+........+ ...+.+|||||... .. .....+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~-~~~~~~~~~ 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER--------FR-SITPSYYRG 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH--------HH-HHHHHHhcC
Confidence 79999999999999999999988865544444444444444443 35689999999721 11 112333445
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 73 AHGAILVYDITNRESFENLD--KWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEEcccc
Confidence 79999999999866554443 4666665543 46899999999996
No 98
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=1.6e-16 Score=130.15 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=78.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc----cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD----VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~----~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
+|+++|++|||||||++++++.... ......+|.....+.+.+++..+++|||||+.+. . .......
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~----~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL-----R----SLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-----H----HHHHHHh
Confidence 5899999999999999999875432 1122345666667778888889999999998321 1 1112345
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++... ..++..+... ..+.|+++|+||+|+
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEES--KSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred CCCCEEEEEEECchHHHHHHH--HHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 567999999999886543322 2444444332 247899999999996
No 99
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=5.1e-16 Score=125.95 Aligned_cols=120 Identities=28% Similarity=0.347 Sum_probs=81.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
..+|+++|.+|+|||||+|++++..+. ..+.+.++...........+..+.+|||||+.+........+... ......
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKA-AWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHH-HHHHHH
Confidence 458999999999999999999998765 444556666666655566667899999999865432211111111 122344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++...... .+...+.. .+.|+++|+||+|+
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~---~~~~~~~~--~~~~~iiv~nK~Dl 123 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDE---FILELLKK--SKTPVILVLNKIDL 123 (168)
T ss_pred hCCEEEEEEECCCccCchHH---HHHHHHHH--hCCCEEEEEEchhc
Confidence 56999999999986322211 33444443 36899999999996
No 100
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=2.8e-16 Score=128.04 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=78.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|++|||||||+|++++..+.....+..........+.+++ ..+.+|||||.. + .... ...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~------~--~~~~-~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE------R--YRSL-APMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH------H--HHHH-HHHHhc
Confidence 4899999999999999999999887543333222223333344443 468999999962 1 1111 123445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAK--SWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccc
Confidence 579999999999876655444 5666665543 56899999999996
No 101
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=1.5e-16 Score=130.55 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=74.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe--cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY--KYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+.. .++.+.... .....+ ....+++|||||.... . .........
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~----~-----~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE-NVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQD----R-----ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-cCCCcccce-EeeeeecCCeEEEEEEeCCCchhh----h-----HHHhhhccc
Confidence 79999999999999999999887742 233322221 111222 3356899999997321 1 111122345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++..... .|+..++....+.|+++|+||+|+
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~-~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRT-KWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhc
Confidence 799999999998776554321 466666554457999999999996
No 102
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.69 E-value=2.6e-16 Score=130.27 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=77.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+... +..|........+..++ ..+++|||||..+. . .....+..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~----~l~~~~~~ 72 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY-HDPTIEDAYKQQARIDNEPALLDILDTAGQAEF-----T----AMRDQYMR 72 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC-cCCcccceEEEEEEECCEEEEEEEEeCCCchhh-----H----HHhHHHhh
Confidence 5899999999999999999998877432 32333233333445555 35789999997321 1 11123345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|...+... ..+.|+++|+||+|+
T Consensus 73 ~~d~~ilv~d~~~~~Sf~~~~--~~~~~i~~~~~~~~~piilvgNK~Dl 119 (172)
T cd04141 73 CGEGFIICYSVTDRHSFQEAS--EFKKLITRVRLTEDIPLVLVGNKVDL 119 (172)
T ss_pred cCCEEEEEEECCchhHHHHHH--HHHHHHHHhcCCCCCCEEEEEEChhh
Confidence 579999999999988887665 344444332 247899999999996
No 103
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=1.2e-16 Score=134.35 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+... +..|...........++ ..+++|||||..... .+ .......
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-----~l----~~~~~~~ 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD-----RL----RSLSYAD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc-----cc----ccccccC
Confidence 799999999999999999998877432 22222222223333444 468999999973221 01 1123345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++..... .|+..+.....+.|+++|+||+||
T Consensus 72 a~~~ilv~dv~~~~sf~~~~~-~~~~~i~~~~~~~piilvgNK~Dl 116 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVES-KWLGEIREHCPGVKLVLVALKCDL 116 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhh
Confidence 799999999999887765432 467777665568999999999996
No 104
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=2.9e-16 Score=129.05 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=76.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++.+..+.....+..+.+.......+++. .+.+|||||... ... ....+...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~-~~~~~~~~ 72 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER--------FQS-LGVAFYRG 72 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH--------HHh-HHHHHhcC
Confidence 7999999999999999999998775443333333444445555554 467999999721 111 11234455
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-----CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-----MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-----~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|...+.... .+.|+++|+||+|+
T Consensus 73 ~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (172)
T cd01862 73 ADCCVLVYDVTNPKSFESLD--SWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCccCCCCceEEEEEECccc
Confidence 79999999999876554333 4554443322 27899999999996
No 105
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.69 E-value=3.3e-16 Score=128.85 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=79.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||++++.+..+.....+..+.+.....+.+++. .+++|||||. ++ .. .....+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~------~~--~~-~~~~~~ 74 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ------ER--FR-SLRTPF 74 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh------HH--HH-HhHHHH
Confidence 3468999999999999999999988776544443333333444455543 5789999996 21 11 111234
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-----cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-----~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|..++... ..+.|+++|+||+|+
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVVLGNKNDI 126 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHH--HHHHHHHHhcccccCCCCcEEEEEECccc
Confidence 45679999999999987666554 455544332 136899999999996
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.69 E-value=2.4e-16 Score=128.71 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=75.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++....+. ...| |.+............+++|||||+. + .. .....+...+|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~------~--~~-~~~~~~~~~ad 69 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQD------K--IR-PLWRHYFQNTQ 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECCEEEEEEECCCCH------h--HH-HHHHHHhcCCC
Confidence 7999999999999999999776664 2222 3333334455667789999999972 1 11 11234456689
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhh--ccCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKS--LFMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~--~~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++.... .++..+.. ...+.|+++|+||+|+
T Consensus 70 ~~i~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 70 GLIFVVDSNDRERIGEAR--EELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred EEEEEEeCCCHHHHHHHH--HHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 999999999876655443 34444322 1246899999999996
No 107
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.69 E-value=3e-16 Score=127.34 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=78.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|+|||||+|++.+..+.....+.++.........+.+. .+.+|||||... .. .........
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~-~~~~~~~~~ 72 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER--------YH-ALGPIYYRD 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHH--------HH-HhhHHHhcc
Confidence 7999999999999999999988775444444444444444554443 588999999621 11 111223455
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 73 ADGAILVYDITDADSFQKVK--KWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccc
Confidence 79999999999976554433 4666665543 36899999999996
No 108
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=2.9e-16 Score=131.65 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=80.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+.....+..+.+.....+..++ ..+++|||||.. . .. .....+..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~------~--~~-~~~~~~~~ 71 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE------R--FR-SLNNSYYR 71 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH------H--HH-hhHHHHcc
Confidence 3799999999999999999998887543333333334444455544 357899999962 1 11 12234455
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+.++.... ...|+++|+||+|+
T Consensus 72 ~~d~iilv~d~~~~~s~~~i~--~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 72 GAHGYLLVYDVTDQESFENLK--FWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred CCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECCCC
Confidence 679999999999987666554 5677766542 35899999999996
No 109
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.69 E-value=3.7e-16 Score=127.60 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=76.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcC--CcccccCccce-eeeeEEEEEec---CceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 170 TILICGYPNVGKSSFMNKITRA--DVDVQPYAFTT-KSLFVGHTDYK---YLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~--~~~~~~~~~tt-~~~~~~~~~~~---~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
+|+++|++|||||||++++.+. .+ ...+.+++ .+......... ...+++|||||. +. .. .....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------~~--~~-~~~~~ 71 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVF-PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ------EL--YS-DMVSN 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH------HH--HH-HHHHH
Confidence 7999999999999999999864 33 33343333 23333333332 246899999996 21 11 11223
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++++.++.... .|+..+.....+.|+++|+||+|+
T Consensus 72 ~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 72 YWESPSVFILVYDVSNKASFENCS--RWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred HhCCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccc
Confidence 345579999999999876654433 677776654457899999999996
No 110
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=2.6e-16 Score=128.05 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=78.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++++..+.....+..+.+.....+.+++ ..+++|||||.... . .......+.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~-~~~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF--------R-TLTSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh--------h-hhhHHHhCC
Confidence 799999999999999999998877543333333333333344443 46899999996211 1 111334456
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~iv~nK~D~ 118 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLE--TWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred CCEEEEEEECCCHHHHHhHH--HHHHHHHHhCCCCCCcEEEEEECCcc
Confidence 79999999999877665443 4666665432 47899999999996
No 111
>PLN03110 Rab GTPase; Provisional
Probab=99.69 E-value=3.2e-16 Score=134.53 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=84.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|++|||||||+++|.+..+.....++...+.....+.+++ ..++||||||.. + +. .....+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~------~--~~-~~~~~~~ 82 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE------R--YR-AITSAYY 82 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH------H--HH-HHHHHHh
Confidence 46899999999999999999999887655445444555555566655 368999999972 1 11 1223445
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..++++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~--~~~~~~~~~~~~~~piiiv~nK~Dl 129 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQ--RWLRELRDHADSNIVIMMAGNKSDL 129 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHH--HHHHHHHHhCCCCCeEEEEEEChhc
Confidence 5679999999999987766544 5676665542 47899999999996
No 112
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.69 E-value=2.6e-16 Score=128.98 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=74.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe--cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY--KYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+.....+ +........... ....+.+|||||..... .+ ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~----~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFP-----AM----QRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcch-----HH----HHHHhh
Confidence 4799999999999999999998887533222 222222222222 23468899999984321 11 112234
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQA-ALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.....+ .++.++... ..+.|+++|+||+|+
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDE 120 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccc
Confidence 57999999999998776554432 333333221 147899999999996
No 113
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=3.4e-16 Score=128.44 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=81.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||++++++..+.....+..+.+.....+.+.+. .+.+|||||+.. ... ....+.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~-~~~~~~ 77 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER--------FRS-ITQSYY 77 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH--------HHH-HHHHHh
Confidence 468999999999999999999987765544444455555656666664 478999999721 111 112344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~~i~v~NK~D~ 124 (169)
T cd04114 78 RSANALILTYDITCEESFRCLP--EWLREIEQYANNKVITILVGNKIDL 124 (169)
T ss_pred cCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccc
Confidence 5579999999999865543332 5666665443 36899999999996
No 114
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=1e-16 Score=146.87 Aligned_cols=120 Identities=28% Similarity=0.330 Sum_probs=93.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHH----HHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM----CSI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~----~~~ 241 (293)
...+|+++|.||||||||+|+|++.+-. +++.++||++.....+++++..+.++||+|.-....-.. ..|+ .++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e-~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITE-SVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCccccccc-ceEEEeehhhH
Confidence 4689999999999999999999998765 889999999999999999999999999999865432111 1111 233
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.++.. +|++++|+|++.+.+ ..+ .++...+.+ .++++++|+||+|+
T Consensus 256 ~aI~~-a~vvllviDa~~~~~--~qD-~~ia~~i~~--~g~~~vIvvNKWDl 301 (444)
T COG1160 256 KAIER-ADVVLLVIDATEGIS--EQD-LRIAGLIEE--AGRGIVIVVNKWDL 301 (444)
T ss_pred hHHhh-cCEEEEEEECCCCch--HHH-HHHHHHHHH--cCCCeEEEEEcccc
Confidence 44433 599999999998643 222 255655555 58999999999996
No 115
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.6e-16 Score=140.16 Aligned_cols=120 Identities=26% Similarity=0.427 Sum_probs=91.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc-
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL- 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~- 247 (293)
.|.++|.||||||||+++++.+++.+++|||||..+..+.+... +..+.+-|.||+++...+... .....+.|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G----LG~~FLrHIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG----LGLRFLRHIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC----ccHHHHHHHH
Confidence 68899999999999999999999999999999999999999874 456999999999986544321 112223332
Q ss_pred -CcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 248 -RSAVLFFLDISGSCGYSIAQQA-ALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 -~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
+.+++||+|++.....+..+.+ .+..++... ..++|.++|+||+|+
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 4799999999986554444433 334455443 468999999999994
No 116
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.69 E-value=3.1e-16 Score=130.15 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=77.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..+|+++|.+|||||||++++....+. ...| |.........++...+++|||||.... ......+...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~---------~~~~~~~~~~ 80 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIP--TIGFNVETVTYKNISFTVWDVGGQDKI---------RPLWRHYYTN 80 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCC--ccccceEEEEECCEEEEEEECCCChhh---------HHHHHHHhCC
Confidence 468999999999999999999766552 2222 333333445566778999999997211 1112344566
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... +++..+... ..+.|+++|+||+||
T Consensus 81 ad~ii~v~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 81 TQGLIFVVDSNDRDRIDEAR--EELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 89999999999976654433 444444221 246899999999996
No 117
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=3.1e-16 Score=156.14 Aligned_cols=122 Identities=26% Similarity=0.306 Sum_probs=90.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh-
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL- 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l- 244 (293)
..++|+++|.+|||||||+|+|++.+.. ++++++||.+.....+.+++..+.+|||||+...............+.+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4579999999999999999999998864 67889999999888888899999999999986533222111111222222
Q ss_pred -hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 -AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 -~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|+++..+.... .++..+.. .++|+++|+||+|+
T Consensus 529 ~i~~advvilViDat~~~s~~~~---~i~~~~~~--~~~piIiV~NK~DL 573 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDL---KVMSMAVD--AGRALVLVFNKWDL 573 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEEchhc
Confidence 2447999999999986543322 45555544 47999999999996
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=5.9e-16 Score=154.17 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=90.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..++|+++|.||||||||+|+|++.... +.+.+++|.+.......+++..+.+|||||+..........+..++.. ..
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~-~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI-AV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH-HH
Confidence 3468999999999999999999988764 678899999998888888889999999999864221111122223322 33
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++|||+|+++. +...+. .+...++. .++|+++|+||+|+
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~-~i~~~Lr~--~~~pvIlV~NK~D~ 395 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDE-RIVRMLRR--AGKPVVLAVNKIDD 395 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHH-HHHHHHHh--cCCCEEEEEECccc
Confidence 457999999999873 333332 45555655 58999999999995
No 119
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.68 E-value=3.5e-16 Score=130.74 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=77.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+.....|....+.....+..++ ..+++|||+|.... . .....+...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~-~~~~~~~~~ 72 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF--------I-NMLPLVCND 72 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH--------H-HhhHHHCcC
Confidence 799999999999999999998877543333333334344555655 35799999997211 1 112234556
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+.++.... ...| ++|+||+||
T Consensus 73 a~~iilv~D~t~~~s~~~i~--~~~~~~~~~~~~~~p-ilVgnK~Dl 116 (182)
T cd04128 73 AVAILFMFDLTRKSTLNSIK--EWYRQARGFNKTAIP-ILVGTKYDL 116 (182)
T ss_pred CCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCE-EEEEEchhc
Confidence 79999999999987776554 5676665532 2455 689999996
No 120
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.68 E-value=5e-16 Score=134.75 Aligned_cols=89 Identities=30% Similarity=0.534 Sum_probs=71.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|+|||||+|+|++....+..++|+|.++..+.+.+++..+++|||||+.+...... .+..+.+ ...+.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~l-~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK-GRGRQVI-AVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch-hHHHHHH-HhhccCC
Confidence 6899999999999999999999887889999999999999999999999999999865432211 1112222 3455679
Q ss_pred EEEEEEeCCCC
Q 040152 250 AVLFFLDISGS 260 (293)
Q Consensus 250 ~il~v~D~s~~ 260 (293)
++++|+|++++
T Consensus 80 ~il~V~D~t~~ 90 (233)
T cd01896 80 LILMVLDATKP 90 (233)
T ss_pred EEEEEecCCcc
Confidence 99999999874
No 121
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.68 E-value=1.9e-16 Score=130.84 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=80.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+++++|.+|+|||||++++.+..+. ..++.|+.+........++ ..+++|||||+.... .+ ...+...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----~~----~~~~~~~ 71 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFD-----KL----RPLCYPD 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhc-----cc----cccccCC
Confidence 7999999999999999999887764 3455555554444555555 357899999983221 00 1123445
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 72 a~~~i~v~d~~~~~sf~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 116 (173)
T cd04130 72 TDVFLLCFSVVNPSSFQNISE-KWIPEIRKHNPKAPIILVGTQADL 116 (173)
T ss_pred CcEEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeeChhh
Confidence 799999999999877665422 467666654457999999999996
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=3.9e-16 Score=130.61 Aligned_cols=113 Identities=14% Similarity=0.211 Sum_probs=79.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||++++.+..+.. + .+|.+.....+.+++..+.+|||||... . ......+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~------~---~~~~~~~~~ 83 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGNIKFTTFDLGGHQQ------A---RRLWKDYFP 83 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECCEEEEEEECCCCHH------H---HHHHHHHhC
Confidence 34689999999999999999999876542 1 2345555666777788899999999721 1 111233455
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .++.++... ..+.|+++|+||+|+
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~--~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESK--RELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHH--HHHHHHHcChhhcCCCEEEEEeCccc
Confidence 679999999999865543332 334443321 257899999999996
No 123
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=5.3e-16 Score=146.36 Aligned_cols=120 Identities=29% Similarity=0.293 Sum_probs=89.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHH----HHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM----CSI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~----~~~ 241 (293)
...+|+++|.+|+|||||+|+|++.... +.+.++||.+.....+.+++..+.+|||||+.+..... ..++. .+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~-~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVT-EGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccch-hhHHHHHHHHHH
Confidence 4578999999999999999999987754 67888999998888888888899999999986543221 11221 122
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. ...+|++++|+|++++.+. .+ ..++..+.. .+.|+++|+||+|+
T Consensus 250 ~~-~~~ad~~ilV~D~~~~~~~--~~-~~~~~~~~~--~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 250 KA-IERADVVLLVLDATEGITE--QD-LRIAGLILE--AGKALVIVVNKWDL 295 (429)
T ss_pred HH-HHhCCEEEEEEECCCCccH--HH-HHHHHHHHH--cCCcEEEEEECccc
Confidence 22 3447999999999985432 22 244555444 47899999999996
No 124
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=5.4e-16 Score=129.46 Aligned_cols=113 Identities=21% Similarity=0.327 Sum_probs=77.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||++++....+. ... .|.+.....++.++..+++|||||+ ++ .. .....+..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~--pt~g~~~~~~~~~~~~~~i~D~~Gq------~~--~~-~~~~~~~~ 83 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQ------DK--IR-PLWRHYFQ 83 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-ccc--CCcceeEEEEEECCEEEEEEECCCC------HH--HH-HHHHHHhc
Confidence 3468999999999999999999876653 222 2333444456667788999999997 21 11 12234456
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhh--ccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKS--LFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~--~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .++..+.. ...+.|+++|+||+|+
T Consensus 84 ~a~~iI~V~D~s~~~s~~~~~--~~l~~~l~~~~~~~~piilv~NK~Dl 130 (181)
T PLN00223 84 NTQGLIFVVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFANKQDL 130 (181)
T ss_pred cCCEEEEEEeCCcHHHHHHHH--HHHHHHhcCHhhCCCCEEEEEECCCC
Confidence 689999999999876654333 33433321 1247899999999996
No 125
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=6.7e-16 Score=130.71 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=76.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc---hhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED---RNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~---~~~~e~~~~~~ 243 (293)
..++|+++|.+|||||||+|+|++..+.++..+++|..... ..++ .+++|||||+....... ...+.......
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 45689999999999999999999988777777777766443 3333 68999999974422111 11111111111
Q ss_pred h---hccCcEEEEEEeCCCCCCCC--------HHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 L---AHLRSAVLFFLDISGSCGYS--------IAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l---~~~~d~il~v~D~s~~~~~~--------~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+ ...++++++|+|++...... ......++..+.. .+.|+++|+||+|+
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl 142 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDK 142 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccc
Confidence 1 22357899999987532210 0011123333333 47899999999996
No 126
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=7.3e-16 Score=145.68 Aligned_cols=120 Identities=28% Similarity=0.303 Sum_probs=89.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHH----HHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM----CSI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~----~~~ 241 (293)
...+|+++|.+|+|||||+|+|++... .+++.+++|.+.....+.+++..+.+|||||+........ .++. .++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~-~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTE-GVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhh-HHHHHHHHHHH
Confidence 467999999999999999999998764 4778889999988888888888999999999866433221 1221 122
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+ ..+|++++|+|++++.+.. + ..++..+.. .++|+++|+||+|+
T Consensus 251 ~~~-~~ad~~ilViD~~~~~~~~--~-~~i~~~~~~--~~~~~ivv~NK~Dl 296 (435)
T PRK00093 251 KAI-ERADVVLLVIDATEGITEQ--D-LRIAGLALE--AGRALVIVVNKWDL 296 (435)
T ss_pred HHH-HHCCEEEEEEeCCCCCCHH--H-HHHHHHHHH--cCCcEEEEEECccC
Confidence 232 3469999999999864432 2 244444443 47899999999996
No 127
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.3e-16 Score=121.56 Aligned_cols=114 Identities=22% Similarity=0.270 Sum_probs=90.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~l 244 (293)
.++|+++|..|||||+|+.+++..-+.+........+.....++.++. +++||||+|+ ++ +.++ ..+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq------er----frsitqsy 76 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ------ER----FRSITQSY 76 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch------HH----HHHHHHHH
Confidence 478999999999999999999998887665555556667777777775 5799999998 43 2333 356
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC-CCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM-NKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~-~~piivV~NK~Dl 293 (293)
+..++++++|+|+|...+|.... +|+.++..... ..--|+|+||+|+
T Consensus 77 yrsahalilvydiscqpsfdclp--ewlreie~yan~kvlkilvgnk~d~ 124 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLP--EWLREIEQYANNKVLKILVGNKIDL 124 (213)
T ss_pred hhhcceEEEEEecccCcchhhhH--HHHHHHHHHhhcceEEEeeccccch
Confidence 66689999999999988888776 78999887643 3445899999995
No 128
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.68 E-value=3.2e-16 Score=128.62 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=77.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||+++|++..+..... .+..+........++ ..+++|||||+.+.... .......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~---------~~~~~~~ 71 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYV-PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL---------RPLSYPN 71 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeeEEEEEECCEEEEEEEEeCCCccccccc---------chhhcCC
Confidence 79999999999999999999988743222 222222233333333 35899999998532110 1122345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 72 TDVFLICFSVDSPSSFENVKT-KWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEEccHHh
Confidence 799999999998766554432 466666655457999999999995
No 129
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=3.5e-16 Score=129.06 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=78.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCcccee-eeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTK-SLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~-~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
+.++|+++|.+|||||||++++.+..+.+..+.+|+. ......+.+++ ..+++|||+|....... ...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---------~~~ 73 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL---------NDA 73 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc---------chh
Confidence 4678999999999999999999998876344444433 23334455555 35789999997432110 112
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+..+... .+.|+++|+||+|+
T Consensus 74 ~~~~~d~~llv~d~~~~~s~~~~~--~~~~~~~~~-~~~p~iiv~NK~Dl 120 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCA--EVYKKYFML-GEIPCLFVAAKADL 120 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHHHHHH--HHHHHhccC-CCCeEEEEEEcccc
Confidence 235579999999999875544332 555555322 37899999999996
No 130
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.68 E-value=5.9e-16 Score=127.96 Aligned_cols=113 Identities=20% Similarity=0.313 Sum_probs=77.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||++++.+..+. .+. .|.+.....+.+++..+.+|||||... .. .....+..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~--------~~-~~~~~~~~ 80 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEGYKLNIWDVGGQKT--------LR-PYWRNYFE 80 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECCEEEEEEECCCCHH--------HH-HHHHHHhC
Confidence 4568999999999999999999987543 111 233344555666677899999999721 11 11223445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhh--ccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKS--LFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~--~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .++..+.. ...+.|+++|+||+|+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (173)
T cd04154 81 STDALIWVVDSSDRLRLDDCK--RELKELLQEERLAGATLLILANKQDL 127 (173)
T ss_pred CCCEEEEEEECCCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECccc
Confidence 679999999999976554332 34444322 1257999999999996
No 131
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.2e-15 Score=140.08 Aligned_cols=123 Identities=28% Similarity=0.344 Sum_probs=91.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHH----HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMC----SI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~----~~ 241 (293)
....|+++|.||||||||+|+|+..+.. +++.++||++.....++.+|.++.++||+|+.+.. ...+|.. +.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~---~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES---NDGIEALGIERAR 343 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc---CChhHHHhHHHHH
Confidence 3468999999999999999999999877 89999999999999999999999999999997721 1222322 22
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-c------CCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-F------MNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~------~~~piivV~NK~Dl 293 (293)
..+ ..+|+|++|+|+......+...+.+.+.....- . ...|+++|.||.|+
T Consensus 344 k~~-~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~ 401 (531)
T KOG1191|consen 344 KRI-ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL 401 (531)
T ss_pred HHH-hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence 333 336999999999443233333333445444331 1 24799999999996
No 132
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.67 E-value=3.7e-16 Score=134.59 Aligned_cols=111 Identities=22% Similarity=0.296 Sum_probs=76.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCcccee-eeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTK-SLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~-~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+|+++|.+|||||||++++.+..+....++.+.. +.....+.+++ ..+.+|||||.. .... ..+..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-------~~~~----~~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-------MWTE----DSCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------hHHH----hHHhh
Confidence 7999999999999999999877664233332221 33344444433 468999999983 1111 11222
Q ss_pred -cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 247 -LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 -~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+|+|+||+|+
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~--~~~~~l~~~~~~~~~piilV~NK~Dl 118 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERAS--ELRIQLRRNRQLEDRPIILVGNKSDL 118 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEChhc
Confidence 679999999999987776554 4555554432 47899999999996
No 133
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=5e-16 Score=132.85 Aligned_cols=114 Identities=20% Similarity=0.286 Sum_probs=80.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-C--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
.+|+++|.+|||||||++++++..+.....+..+.+.....+.+. + ..+++|||||.. + .. .....+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~------~--~~-~~~~~~~ 73 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE------R--FR-SITRSYY 73 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch------h--HH-HHHHHHh
Confidence 589999999999999999999888754444444444444444442 2 358999999972 1 11 1123345
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.+++... +|+.++.... ...|+++|+||+|+
T Consensus 74 ~~~d~iilv~D~~~~~Sf~~l~--~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHVH--DWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred cCCcEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 5679999999999987766554 5676665432 35678999999996
No 134
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.67 E-value=6e-16 Score=125.88 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=73.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++....+. ... .|.+.....+++.+..+++|||||..+ .. .....+...+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~-~~~~~~~~~~~ 68 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTI--PTIGFNVETVTYKNLKFQVWDLGGQTS--------IR-PYWRCYYSNTD 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcC--CccCcCeEEEEECCEEEEEEECCCCHH--------HH-HHHHHHhcCCC
Confidence 5899999999999999999876653 222 233344445566677899999999731 11 11233445689
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++..... .+...++.. ..+.|+++|+||+|+
T Consensus 69 ~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl 112 (158)
T cd04151 69 AIIYVVDSTDRDRLGTAKE-ELHAMLEEEELKGAVLLVFANKQDM 112 (158)
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHhchhhcCCcEEEEEeCCCC
Confidence 9999999998654432221 222222221 247899999999996
No 135
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.67 E-value=4.4e-16 Score=128.49 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=78.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|+|||||++++.+..+.. .+.++..+.....+..++. .+.+|||||..+.... .......
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~~~~ 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPE-EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL---------RPLSYPM 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc---------ccccCCC
Confidence 79999999999999999999887742 3333443343334455554 3689999997432110 1123445
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 72 ~~~~ilv~~~~~~~s~~~~~~-~~~~~l~~~~~~~piivv~nK~Dl 116 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKE-EWVPELKEYAPNVPYLLVGTQIDL 116 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeEchhh
Confidence 699999999999877654432 356665544468999999999996
No 136
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=9.6e-16 Score=126.95 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=77.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..+|+++|++|+|||||++++++..+.. . ..|.+.......+++..+.+|||||... .. .........
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~-~~~~~~~~~ 82 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-T--SPTIGSNVEEIVYKNIRFLMWDIGGQES--------LR-SSWNTYYTN 82 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-c--CCccccceEEEEECCeEEEEEECCCCHH--------HH-HHHHHHhhc
Confidence 4589999999999999999998776642 2 2344445566677778899999999721 11 112233456
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHh-hc-cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIK-SL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~-~~-~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .++..+. .. ..+.|+++|+||+|+
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~--~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTK--EELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHhchhhcCCCEEEEEECCCC
Confidence 79999999999865544332 3333332 21 246899999999996
No 137
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.67 E-value=1.9e-15 Score=125.78 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=77.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc--ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC--chhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV--DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~--~~~~~e~~~~~ 242 (293)
+.++|+++|.+|+|||||+|++++..+ .+++.+++|.+...... + ..+.+|||||+...... ++..+......
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 567999999999999999999998762 35567777776554332 2 36999999998653221 11111111111
Q ss_pred Hhh--ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALA--HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~--~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+. ..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~---~~~~~~~~--~~~pviiv~nK~D~ 141 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDL---EMLEWLRE--RGIPVLIVLTKADK 141 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccc
Confidence 122 224799999999875332222 33444443 47899999999996
No 138
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.66 E-value=1e-15 Score=128.30 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=79.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|++|||||||++++.+..+. .+ ..|..+..+.+.+++..+++|||||.. . .. .....+..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~-~~T~~~~~~~i~~~~~~~~l~D~~G~~------~--~~-~~~~~~~~ 85 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA--QH-VPTLHPTSEELTIGNIKFKTFDLGGHE------Q--AR-RLWKDYFP 85 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccCcceEEEEECCEEEEEEECCCCH------H--HH-HHHHHHhc
Confidence 4568999999999999999999987763 12 234455566777888889999999962 1 11 11123345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|+++..++.... .++.++... ..+.|+++|+||+|+
T Consensus 86 ~ad~iilV~D~~~~~s~~~~~--~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 86 EVDGIVFLVDAADPERFQESK--EELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred cCCEEEEEEECCcHHHHHHHH--HHHHHHHcCccccCCCEEEEEeCCCC
Confidence 579999999999875554332 445444332 246899999999996
No 139
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=4.6e-16 Score=131.63 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=79.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+. ..+..++.......+.+++ ..+++|||||..... . ........
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-----~----~~~~~~~~ 70 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP-----A----MRKLSIQN 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh-----H----HHHHHhhc
Confidence 5899999999999999999988764 3344455455555666666 468899999973221 0 11223455
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+++... .|+..+.... .+.|+++|+||+|+
T Consensus 71 ad~vilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 71 SDAFALVYAVDDPESFEEVE--RLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 79999999999977665444 4454444432 46899999999996
No 140
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=5.2e-16 Score=120.81 Aligned_cols=114 Identities=25% Similarity=0.307 Sum_probs=87.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec--CceEEEEeCCCCCCCCCCchhHHHHHHH-HHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDRNIIEMCSI-TAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~iiDTpG~~~~~~~~~~~~e~~~~-~~l 244 (293)
.++++++|.+.+|||||+-+.++..+..+-+.....+..+..+--. ..++++|||+|+ ++ ...+ .++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq------Er----yrtiTTay 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ------ER----YRTITTAY 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc------hh----hhHHHHHH
Confidence 5699999999999999999999998876555444444444443332 246899999998 43 2333 456
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
++.++++++++|+++..+++..+ .|...++... .+.|+|+|+||||+
T Consensus 91 yRgamgfiLmyDitNeeSf~svq--dw~tqIktysw~naqvilvgnKCDm 138 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQ--DWITQIKTYSWDNAQVILVGNKCDM 138 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHH--HHHHHheeeeccCceEEEEecccCC
Confidence 67789999999999988887766 6777776652 58999999999997
No 141
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=7.4e-16 Score=132.38 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=76.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++.+..+.. ..+ |.........+....+.+|||||..... .....+...+|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~---------~l~~~~~~~ad 69 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS--TVGGAFYLKQWGPYNISIWDTAGREQFH---------GLGSMYCRGAA 69 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC--ccceEEEEEEeeEEEEEEEeCCCcccch---------hhHHHHhccCC
Confidence 79999999999999999999988742 222 3332233334455678999999973211 11123455679
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
++++|||++++.++.... .|+..+... ..+.|+|+|+||+||
T Consensus 70 ~~IlV~Dvt~~~Sf~~l~--~~~~~l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 70 AVILTYDVSNVQSLEELE--DRFLGLTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccc
Confidence 999999999988776654 333333322 246899999999996
No 142
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.66 E-value=9.2e-16 Score=124.56 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=77.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++++..+. . ...|.......+.+.+..+.+|||||.... . .....+...+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~--------~-~~~~~~~~~~~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKNVSFTVWDVGGQDKI--------R-PLWKHYYENTN 68 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECCEEEEEEECCCChhh--------H-HHHHHHhccCC
Confidence 5899999999999999999988742 1 123444555566677788999999997321 1 11233445579
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++.... .++..+... ..+.|+++|+||+|+
T Consensus 69 ~~i~v~D~~~~~~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~ 112 (158)
T cd00878 69 GIIFVVDSSDRERIEEAK--EELHKLLNEEELKGVPLLIFANKQDL 112 (158)
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHhCcccCCCcEEEEeeccCC
Confidence 999999999876554443 344433221 247899999999996
No 143
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.66 E-value=9e-16 Score=124.26 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=77.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++++..+ ...+.+++.+........++ ..+++|||||... .. .........
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----~~----~~~~~~~~~ 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-----FS----AMRDLYIRQ 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-----HH----HHHHHHHhc
Confidence 589999999999999999998774 44455555555555566654 4689999999732 11 111233445
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .+...+.... .+.|+++|+||+|+
T Consensus 71 ~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~ 116 (160)
T cd00876 71 GDGFILVYSITDRESFEEIK--GYREQILRVKDDEDIPIVLVGNKCDL 116 (160)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECCcc
Confidence 69999999999866544333 4444444432 37999999999995
No 144
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.66 E-value=9e-16 Score=152.82 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=89.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC-chhHHHHH-HHHH-h
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DRNIIEMC-SITA-L 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~-~~~~~e~~-~~~~-l 244 (293)
..+|+++|.||||||||+|+|++.+..+++++++|.+...+.+.+++.++.+|||||+.+.... +....+.. +... .
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 3589999999999999999999998889999999999999999998889999999999764321 11111111 1111 1
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|+++.. ..+.+..++.+ .+.|+++|+||+|+
T Consensus 83 ~~~aD~vI~VvDat~le-----r~l~l~~ql~e--~giPvIvVlNK~Dl 124 (772)
T PRK09554 83 SGDADLLINVVDASNLE-----RNLYLTLQLLE--LGIPCIVALNMLDI 124 (772)
T ss_pred ccCCCEEEEEecCCcch-----hhHHHHHHHHH--cCCCEEEEEEchhh
Confidence 23479999999998732 12234555555 47999999999995
No 145
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.66 E-value=1e-15 Score=127.95 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=74.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEE---ecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTD---YKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~---~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..+|+++|.+|||||||++++.+..+. ...|+.+......... ..+..+.+|||||.. + .. .....+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------~--~~-~~~~~~ 72 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE------K--LR-PLWKSY 72 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcH------h--HH-HHHHHH
Confidence 458999999999999999999887664 2233322222222222 234678999999972 1 11 112344
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .++.++... ..+.|+++|+||+|+
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~--~~~~~i~~~~~~~~~p~iiv~NK~D~ 121 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAK--TELHKITRFSENQGVPVLVLANKQDL 121 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHH--HHHHHHHhhhhcCCCcEEEEEECcCc
Confidence 55689999999999865443332 344444332 147899999999996
No 146
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=8.7e-16 Score=134.31 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=78.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||++++.+..+.. .+.+|+.+.....+.+++. .++||||+|..+.. .+. ......
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~-----~~~----~~~~~~ 71 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP-----AMR----RLSILT 71 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh-----HHH----HHHhcc
Confidence 69999999999999999999887753 4444554555555566653 57899999973211 111 112345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc----------cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL----------FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~----------~~~~piivV~NK~Dl 293 (293)
+|++++|||++++.+|+... .|+.++... ..+.|+++|+||+|+
T Consensus 72 ad~iIlVfdv~~~~Sf~~i~--~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl 125 (247)
T cd04143 72 GDVFILVFSLDNRESFEEVC--RLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred CCEEEEEEeCCCHHHHHHHH--HHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence 79999999999987766554 445554321 247899999999996
No 147
>PLN00023 GTP-binding protein; Provisional
Probab=99.66 E-value=9.1e-16 Score=137.09 Aligned_cols=116 Identities=21% Similarity=0.232 Sum_probs=81.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---------------CceEEEEeCCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---------------YLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---------------~~~~~iiDTpG~~~~~~~ 231 (293)
...+|+++|..|||||||++++.+..+.....+....+.....+.++ ...++||||+|....
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf--- 96 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY--- 96 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh---
Confidence 45699999999999999999999887754333332233333444443 134899999997211
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-------------CCCcEEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-------------MNKPLIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-------------~~~piivV~NK~Dl 293 (293)
......+...+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+||
T Consensus 97 ------rsL~~~yyr~AdgiILVyDITdr~SFenL~--kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 97 ------KDCRSLFYSQINGVIFVHDLSQRRTKTSLQ--KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred ------hhhhHHhccCCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 111234556689999999999987776554 6777776531 24799999999997
No 148
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=1.3e-15 Score=127.36 Aligned_cols=112 Identities=20% Similarity=0.293 Sum_probs=76.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..+|+++|.+|||||||++++....+. ...| |.......+...+..+++|||||.. + .. .....+...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~--T~~~~~~~~~~~~~~~~l~D~~G~~------~--~~-~~~~~~~~~ 84 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEYKNLKFTMWDVGGQD------K--LR-PLWRHYYQN 84 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--ccccceEEEEECCEEEEEEECCCCH------h--HH-HHHHHHhcC
Confidence 468999999999999999999766553 2222 3334444556677789999999972 1 11 112334566
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHh-h-ccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIK-S-LFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~-~-~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+++... .++..+. . ...+.|+++|+||+|+
T Consensus 85 ad~iI~v~D~t~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 85 TNGLIFVVDSNDRERIGDAR--EELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred CCEEEEEEeCCCHHHHHHHH--HHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 89999999999876655443 3343332 2 1246899999999996
No 149
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.65 E-value=7.1e-16 Score=125.91 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=77.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|.+|||||||+.++....+... +++ +.......+.+++ ..+++|||+|..+ . .+...
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~---------~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----A---------QFASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCC-CccceEEEEEECCEEEEEEEEECCCCCc-----h---------hHHhc
Confidence 699999999999999999988766432 222 2333344556666 3589999999821 1 12345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~--~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVY--NLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 79999999999998887655 5677766543 46899999999985
No 150
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.65 E-value=6.8e-16 Score=127.44 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=78.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
++|+++|++|||||||++++.+..+... +.++........+.+++. .+.+|||||..+... .......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~~~ 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR---------LRPLSYP 71 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccccceEEEEEECCEEEEEEEEeCCCchhhhh---------ccccccC
Confidence 4899999999999999999998876432 333333333445555544 578999999732110 0112334
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 72 ~~d~~i~v~~~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 117 (175)
T cd01870 72 DTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 117 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCEEEEeeChhc
Confidence 5799999999998766544321 466666554458999999999996
No 151
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.65 E-value=1.3e-15 Score=124.00 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=75.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
++|+++|++|||||||++++++..+. ..+.+++.+........++ ..+.+|||||..+.. ........
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~ 70 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA---------AIRDNYHR 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh---------HHHHHHhh
Confidence 37999999999999999999987764 3444444444434344443 458999999973221 11122344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piiiv~NK~D~ 117 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATA--EFREQILRVKDDDNVPLLLVGNKCDL 117 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEcccc
Confidence 569999999999876554443 333333332 247999999999996
No 152
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.65 E-value=1e-15 Score=125.87 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=77.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
++|+++|.+|||||||++++.+..+.. .+..++.........+++ ..+++|||||..... .....+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE-SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT---------AMRELYIK 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch---------hhhHHHHh
Confidence 479999999999999999999877642 333344334344445544 467999999974321 11123345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.++++++|+|++++.++.... .|...+... ..+.|+++|+||+|+
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~--~~~~~i~~~~~~~~~piiiv~nK~D~ 118 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELG--ELREQVLRIKDSDNVPMVLVGNKADL 118 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHH--HHHHHHHHhhCCCCCCEEEEEEChhc
Confidence 579999999999976665444 455555432 247999999999995
No 153
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.65 E-value=3.2e-16 Score=126.56 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=82.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
...+|++.|.+|||||||+|++...++..........+.....+..++. .++||||+|+ ++ ++++ .+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ------ER----FqsLg~a 77 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ------ER----FQSLGVA 77 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccH------HH----hhhcccc
Confidence 4568999999999999999999988876443333333333333334443 4799999998 43 3444 45
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc----c-CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL----F-MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~----~-~~~piivV~NK~Dl 293 (293)
.++.+|++++|+|+.++.+|...+ .|-+++-.. . ..-|.|+++||+|+
T Consensus 78 FYRgaDcCvlvydv~~~~Sfe~L~--~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 78 FYRGADCCVLVYDVNNPKSFENLE--NWRKEFLIQASPQDPETFPFVILGNKIDV 130 (210)
T ss_pred eecCCceEEEEeecCChhhhccHH--HHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence 677899999999999999998877 455443321 1 35799999999996
No 154
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=1.7e-15 Score=128.04 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=83.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCccccc--CccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHH---HHHHh
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQP--YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMC---SITAL 244 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~--~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~---~~~~l 244 (293)
+|+++|.||||||||+|++++....... .++.|.........+++..+.++||||+.+..... ..+... .+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~-~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP-EQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh-HHHHHHHHHHHHhc
Confidence 6999999999999999999998765333 45678888888888889999999999998764321 112111 11222
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC---CCcEEEEEeccC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM---NKPLIIVCNKTD 292 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~---~~piivV~NK~D 292 (293)
...+|+++||+|+.+ +...+ ...++.++..+. -.++++|+|++|
T Consensus 81 ~~g~~~illVi~~~~---~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 81 APGPHAFLLVVPLGR---FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CCCCEEEEEEEECCC---cCHHH-HHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 345699999999876 23222 244555555432 268899999988
No 155
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=9.6e-16 Score=133.17 Aligned_cols=123 Identities=24% Similarity=0.349 Sum_probs=94.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHH---HHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMC---SIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~---~~~ 242 (293)
....|+++|.||||||||.|.+.|.++. ++....||+....+.+..+..++.+.||||........+...+.. ...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 4458999999999999999999999987 788899999999999999989999999999988665544444433 122
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....||+++.|+|++++....... ++..+... ...|-++|.||+|.
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~---vl~~l~~y-s~ips~lvmnkid~ 197 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPR---VLHMLEEY-SKIPSILVMNKIDK 197 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChH---HHHHHHHH-hcCCceeeccchhc
Confidence 2334479999999999754433332 34444332 47899999999984
No 156
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=4.5e-16 Score=122.90 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=89.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
..++|+++|.+|||||||+-++....+..........++.+..+..++. ++.||||+|+ ++ +.++ ..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq------Er----FRtLTpS 79 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ------ER----FRTLTPS 79 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccch------Hh----hhccCHh
Confidence 4579999999999999999999998886544333455667777777775 4789999998 33 3444 45
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+++.+.++++|+|++.+.+|...+ .|++++.-.. .+.-.++|+||+|.
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd--~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLD--IWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHH--HHHHHHHhhcCCccHhHhhhcccccc
Confidence 677789999999999999888775 6888887654 34556799999983
No 157
>PLN03108 Rab family protein; Provisional
Probab=99.65 E-value=1.9e-15 Score=129.09 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=80.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|++|||||||++++++..+.....+....+.....+.+++. .+.+|||||... +... ...+.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~--------~~~~-~~~~~ 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSI-TRSYY 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH--------HHHH-HHHHh
Confidence 468999999999999999999988776544444444444445555553 578999999721 1111 12334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... ...|+++|+||+|+
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~--~~~~~~~~~~~~~~piiiv~nK~Dl 123 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLA--SWLEDARQHANANMTIMLIGNKCDL 123 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccC
Confidence 4579999999999987766544 4565554332 47899999999996
No 158
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.8e-15 Score=144.47 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=92.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh-cc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA-HL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~-~~ 247 (293)
.+|+++|.||||||||+|+|+|.+..++++|+.|.+...+.+.+.+..++++|.||..+-.... .-|.-+...+. +.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S--~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS--EDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC--chHHHHHHHHhcCC
Confidence 4699999999999999999999999999999999999999999999999999999998743221 11223333333 44
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|+++.|+|+++ .+..+.+.-++.+ .+.|+++++|++|.
T Consensus 82 ~D~ivnVvDAtn-----LeRnLyltlQLlE--~g~p~ilaLNm~D~ 120 (653)
T COG0370 82 PDLIVNVVDATN-----LERNLYLTLQLLE--LGIPMILALNMIDE 120 (653)
T ss_pred CCEEEEEcccch-----HHHHHHHHHHHHH--cCCCeEEEeccHhh
Confidence 799999999997 3443444445555 58999999999994
No 159
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.64 E-value=1.9e-15 Score=122.92 Aligned_cols=110 Identities=20% Similarity=0.297 Sum_probs=72.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
+|+++|.+|||||||++++.+..+.. ..| |..........+ ...+.+|||||... .. .....+...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~-~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIP--TVGFNVEMLQLEKHLSLTVWDVGGQEK--------MR-TVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccC--ccCcceEEEEeCCceEEEEEECCCCHh--------HH-HHHHHHhccC
Confidence 48999999999999999999887642 222 222333334433 35789999999721 11 1122334457
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
|++++|+|++++.++.... .++.++... ..+.|+++|+||+|+
T Consensus 69 ~~iv~v~D~~~~~~~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQ--KELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred CEEEEEEECCcHHHHHHHH--HHHHHHHhchhhcCCCEEEEEECccc
Confidence 9999999999865444332 344443221 247999999999996
No 160
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.64 E-value=2.1e-15 Score=121.47 Aligned_cols=110 Identities=19% Similarity=0.288 Sum_probs=75.0
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcE
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSA 250 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (293)
|+++|++|||||||+|++.+..+.....| |..........++..+.+|||||... .. .....+...+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~-~~~~~~~~~~d~ 70 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPR--------FR-SMWERYCRGVNA 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECCEEEEEEECCCCHh--------HH-HHHHHHHhcCCE
Confidence 78999999999999999999877544443 33333344556667899999999721 11 122334556799
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 251 VLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 251 il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+++|+|++++.++.... .++..+... ..+.|+++|+||+|+
T Consensus 71 ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~D~ 113 (159)
T cd04159 71 IVYVVDAADRTALEAAK--NELHDLLEKPSLEGIPLLVLGNKNDL 113 (159)
T ss_pred EEEEEECCCHHHHHHHH--HHHHHHHcChhhcCCCEEEEEeCccc
Confidence 99999999865443322 233333221 247899999999995
No 161
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.64 E-value=2.3e-15 Score=127.60 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=75.8
Q ss_pred cCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEE
Q 040152 174 CGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAV 251 (293)
Q Consensus 174 vG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~i 251 (293)
+|.+|||||||++++....+.....+....+.....+.+++ ..+.||||||.... . .....+...+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~--------~-~l~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF--------G-GLRDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh--------h-hhhHHHhcCCCEE
Confidence 69999999999999997766432222222233333333333 46899999997211 1 1112355668999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 252 LFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 252 l~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++|+|++++.++.... .|+.++.....+.|+++|+||+|+
T Consensus 72 ilV~D~t~~~S~~~i~--~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 72 IIMFDVTARVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred EEEEECCChHHHHHHH--HHHHHHHHhCCCCCEEEEEECccc
Confidence 9999999987776554 577777765568999999999996
No 162
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=4.9e-15 Score=122.61 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=82.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC--cccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC--chhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD--VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~--~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~--~~~~~e~~~~~ 242 (293)
..+-|+++|.+|||||||+|+|++.+ ..++..|+.|+.++...+. + .+.++|.||++-.... .+..+......
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999999977 4588999999887765443 2 2889999999764322 22222221112
Q ss_pred HhhccC--cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLR--SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~--d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+...+ .++++++|+.++...... +.++.+.. .+.|+++|+||+|.
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~---em~~~l~~--~~i~~~vv~tK~DK 147 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR---EMIEFLLE--LGIPVIVVLTKADK 147 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCeEEEEEcccc
Confidence 222222 578999999885432222 34444444 58999999999994
No 163
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.63 E-value=8.5e-15 Score=130.11 Aligned_cols=133 Identities=19% Similarity=0.290 Sum_probs=85.8
Q ss_pred HhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhH
Q 040152 157 HMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNI 235 (293)
Q Consensus 157 ~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~ 235 (293)
.+.+++..+.+..+|+++|.+||||||++|+|++.... ++....+|..........++..+.+|||||+.+........
T Consensus 27 ~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~ 106 (313)
T TIGR00991 27 LLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQA 106 (313)
T ss_pred HHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHH
Confidence 34455666667889999999999999999999998764 44544444444444455678899999999997642111111
Q ss_pred HHHHHHHH--hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC---CCcEEEEEeccCC
Q 040152 236 IEMCSITA--LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM---NKPLIIVCNKTDL 293 (293)
Q Consensus 236 ~e~~~~~~--l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~---~~piivV~NK~Dl 293 (293)
. ..+.. .....|++|||.+.+.. .++..+ ..+++.+...|. -.++|+|+|++|.
T Consensus 107 ~--~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~D-kqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 107 V--NIIKRFLLGKTIDVLLYVDRLDAY-RVDTLD-GQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred H--HHHHHHhhcCCCCEEEEEeccCcc-cCCHHH-HHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 1 11111 12246999999666543 233222 145666665542 3679999999883
No 164
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.63 E-value=5.7e-15 Score=122.97 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=76.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCccccc----------------CccceeeeeEEEEEecCceEEEEeCCCCCCCCCCch
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQP----------------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDR 233 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~----------------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~ 233 (293)
+|+++|.+|+|||||+|+|++....... ..++|.........+.+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 4899999999999999999887654221 2344555556666777788999999997321
Q ss_pred hHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 234 NIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 234 ~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....... ...+|++++|+|++++...... .++..+.. .+.|+++|+||+|+
T Consensus 76 ---~~~~~~~-~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~--~~~~i~iv~nK~D~ 126 (189)
T cd00881 76 ---SSEVIRG-LSVSDGAILVVDANEGVQPQTR---EHLRIARE--GGLPIIVAINKIDR 126 (189)
T ss_pred ---HHHHHHH-HHhcCEEEEEEECCCCCcHHHH---HHHHHHHH--CCCCeEEEEECCCC
Confidence 1111222 2356999999999886543322 33444443 47999999999996
No 165
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.63 E-value=5.7e-15 Score=118.28 Aligned_cols=115 Identities=25% Similarity=0.259 Sum_probs=79.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|+|||||++++.+..+.....++++.+.....+..++ ..+.+|||||+.+. +... .....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~----~~~~~ 72 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY-----RAIR----RLYYR 72 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc-----hHHH----HHHHh
Confidence 5899999999999999999999886667778888888877777777 67899999996332 1111 11222
Q ss_pred cCcEEEEEEeCCCC-CCCCHHHHHHHHHHHhhccC-CCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGS-CGYSIAQQAALFHSIKSLFM-NKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~-~~~~~~~~~~~l~~l~~~~~-~~piivV~NK~Dl 293 (293)
.++.++.++|.+.. .++.... ..++..+..... +.|+++|+||+|+
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEIL-EKQTKEIIHHAESNVPIILVGNKIDL 120 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhHh-HHHHHHHHHhcccCCcEEEEEEcccC
Confidence 34677778887765 3332221 123333333222 7899999999996
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.62 E-value=4.2e-15 Score=125.11 Aligned_cols=110 Identities=21% Similarity=0.197 Sum_probs=72.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcC-------CcccccCccceeeeeEEEEEec--------------CceEEEEeCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRA-------DVDVQPYAFTTKSLFVGHTDYK--------------YLRYQVIDTPGILDR 228 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~-------~~~~~~~~~tt~~~~~~~~~~~--------------~~~~~iiDTpG~~~~ 228 (293)
+|+++|.+|+|||||+++|++. ....+..+++|.+.......+. +..+++|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 7999999999999999999873 1112334567777666555554 5679999999972
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+...... ..+.+|++++|+|+++.......+.+.+ ... .+.|+++|+||+|+
T Consensus 80 ------~~~~~~~~-~~~~~d~vi~VvD~~~~~~~~~~~~~~~---~~~--~~~~~iiv~NK~Dl 132 (192)
T cd01889 80 ------SLIRTIIG-GAQIIDLMLLVVDATKGIQTQTAECLVI---GEI--LCKKLIVVLNKIDL 132 (192)
T ss_pred ------HHHHHHHH-HHhhCCEEEEEEECCCCccHHHHHHHHH---HHH--cCCCEEEEEECccc
Confidence 11112222 2344699999999987433222222221 111 36799999999995
No 167
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=8.4e-15 Score=123.47 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=74.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC--Ccccc--------------cCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc
Q 040152 169 RTILICGYPNVGKSSFMNKITRA--DVDVQ--------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~--~~~~~--------------~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~ 232 (293)
++|+++|.+|||||||+++|++. .+... ...++|.......+.+++..+++|||||+.+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 48999999999999999999862 22211 11334444555566677788999999998321
Q ss_pred hhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 RNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 ~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. .....+...+|++++|+|+++.. ..... .++..+.. .+.|+++|+||+|+
T Consensus 79 ----~-~~~~~~~~~~d~~ilV~d~~~~~-~~~~~--~~~~~~~~--~~~p~iiv~NK~Dl 129 (194)
T cd01891 79 ----G-GEVERVLSMVDGVLLLVDASEGP-MPQTR--FVLKKALE--LGLKPIVVINKIDR 129 (194)
T ss_pred ----H-HHHHHHHHhcCEEEEEEECCCCc-cHHHH--HHHHHHHH--cCCCEEEEEECCCC
Confidence 1 11233445579999999998742 12111 33444433 47899999999996
No 168
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.62 E-value=2.1e-15 Score=122.81 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=82.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|||||||++++.+..+.....+....+.....+..++. .+.+|||+|. +.. . .........
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~------~~~--~-~~~~~~~~~ 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ------ERF--D-SLRDIFYRN 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS------GGG--H-HHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc------ccc--c-ccccccccc
Confidence 6899999999999999999988775433333225555566666554 4799999997 211 1 111234455
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC-CCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM-NKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~-~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++.... .|+..+..... +.|+++|+||+|+
T Consensus 72 ~~~~ii~fd~~~~~S~~~~~--~~~~~i~~~~~~~~~iivvg~K~D~ 116 (162)
T PF00071_consen 72 SDAIIIVFDVTDEESFENLK--KWLEEIQKYKPEDIPIIVVGNKSDL 116 (162)
T ss_dssp ESEEEEEEETTBHHHHHTHH--HHHHHHHHHSTTTSEEEEEEETTTG
T ss_pred cccccccccccccccccccc--cccccccccccccccceeeeccccc
Confidence 79999999999987766555 67888777655 6899999999995
No 169
>PLN03118 Rab family protein; Provisional
Probab=99.62 E-value=4.4e-15 Score=126.90 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+++|.+..+.. ..+.++.+.....+.+++ ..+++|||||.... . .....+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~----~~~~~~ 82 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-----R----TLTSSY 82 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchhh-----H----HHHHHH
Confidence 35689999999999999999999877632 223333333344445544 36799999997321 1 111234
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|...+... ..+.|+++|+||+|+
T Consensus 83 ~~~~d~~vlv~D~~~~~sf~~~~~-~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 83 YRNAQGIILVYDVTRRETFTNLSD-VWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 455799999999999776665432 233333221 246799999999996
No 170
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=8e-15 Score=121.48 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=68.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCccc------cc---------CccceeeeeEEEEEe-----cCceEEEEeCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDV------QP---------YAFTTKSLFVGHTDY-----KYLRYQVIDTPGILDR 228 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~------~~---------~~~tt~~~~~~~~~~-----~~~~~~iiDTpG~~~~ 228 (293)
++|+++|.+|||||||+++|++..... .. ..++|.........+ .+..+++|||||+.+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998743111 01 112233322222322 3446889999998431
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. .. .......+|++++|+|+++..+...... |. .+.. .+.|+++|+||+|+
T Consensus 81 -----~---~~-~~~~~~~ad~~i~v~D~~~~~~~~~~~~--~~-~~~~--~~~~iiiv~NK~Dl 131 (179)
T cd01890 81 -----S---YE-VSRSLAACEGALLLVDATQGVEAQTLAN--FY-LALE--NNLEIIPVINKIDL 131 (179)
T ss_pred -----H---HH-HHHHHHhcCeEEEEEECCCCccHhhHHH--HH-HHHH--cCCCEEEEEECCCC
Confidence 1 11 1223345799999999998654433332 22 2222 47899999999996
No 171
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=2.5e-15 Score=126.94 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=74.3
Q ss_pred CceEeecCCCCCCHhHHHH-HHhcCCcc----cccCcccee--eeeEEE--------EEecC--ceEEEEeCCCCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMN-KITRADVD----VQPYAFTTK--SLFVGH--------TDYKY--LRYQVIDTPGILDRPF 230 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin-~l~~~~~~----~~~~~~tt~--~~~~~~--------~~~~~--~~~~iiDTpG~~~~~~ 230 (293)
..+|+++|.+|||||||+. ++.+..+. ...+.+|.. +..... ..+++ ..+++|||+|..+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3589999999999999996 55554331 222333321 111111 12333 46899999998321
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+ ...+...+|++++|+|++++.++..... .|+.+++....+.|+++|+||+||
T Consensus 80 -----~----~~~~~~~ad~iilv~d~t~~~Sf~~~~~-~w~~~i~~~~~~~piilvgNK~DL 132 (195)
T cd01873 80 -----D----RRFAYGRSDVVLLCFSIASPNSLRNVKT-MWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred -----h----hcccCCCCCEEEEEEECCChhHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhc
Confidence 1 1123456899999999999887765532 366666655457899999999996
No 172
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.62 E-value=9.7e-15 Score=117.02 Aligned_cols=114 Identities=26% Similarity=0.290 Sum_probs=81.4
Q ss_pred ecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcE
Q 040152 173 ICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSA 250 (293)
Q Consensus 173 vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (293)
++|.+|+|||||+|++++.... ....+++|........... +..+.+|||||+.+........ ......+...+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~--~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER--EELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH--HHHHHHHHHhCCE
Confidence 5899999999999999988766 6677777877777666665 5689999999997654332211 1122234455799
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 251 VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 251 il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+++|+|+++........ +...... .+.|+++|+||+|+
T Consensus 79 il~v~~~~~~~~~~~~~---~~~~~~~--~~~~~ivv~nK~D~ 116 (163)
T cd00880 79 ILFVVDADLRADEEEEK---LLELLRE--RGKPVLLVLNKIDL 116 (163)
T ss_pred EEEEEeCCCCCCHHHHH---HHHHHHh--cCCeEEEEEEcccc
Confidence 99999999865443332 2333332 47899999999995
No 173
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.61 E-value=1.4e-14 Score=126.50 Aligned_cols=126 Identities=23% Similarity=0.255 Sum_probs=83.7
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchh-HHHHHHHH-
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRN-IIEMCSIT- 242 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~-~~e~~~~~- 242 (293)
....+|+++|.+|||||||+|+|++.... ++....+|.........+++..+.+|||||+.+....... .-....+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 35679999999999999999999998754 5566667777777777778889999999999876321111 00011111
Q ss_pred Hhh-ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC---CCcEEEEEeccCC
Q 040152 243 ALA-HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM---NKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~-~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~---~~piivV~NK~Dl 293 (293)
.+. ...|+++||..++.. .+...+ ..+++.+...+. -.++++|+||+|.
T Consensus 109 ~l~~~~idvIL~V~rlD~~-r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMY-RRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred HHhccCCCEEEEEEcCCCC-CCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 121 235889988766653 233332 245555554432 2579999999984
No 174
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.61 E-value=5.9e-15 Score=122.55 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=75.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.+|+++|.+|||||||++++.+..+.... .+++..........++ ..+++|||||+.+. . ........
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~-~~~~~~~~ 71 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY-YPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY--------S-ILPQKYSI 71 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc-CcchhhhEEEEEEECCEEEEEEEEECCChHhh--------H-HHHHHHHh
Confidence 47999999999999999999988764333 3333333344444444 34689999997321 1 11122344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|+++..+++... .++..+... ..+.|+++|+||+|+
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVK--VIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 569999999999876555443 344444332 146899999999995
No 175
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.4e-15 Score=117.04 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=84.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHH-HHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSI-TAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~-~~l 244 (293)
.++++++|+.|.|||+|+.++...++..........+.....+..++ .+++||||+|+ ++ +.++ +.+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQ------Er----FRSVtRsY 78 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ------ER----FRSVTRSY 78 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccH------HH----HHHHHHHH
Confidence 46899999999999999999998887643332223333333344443 46899999998 33 2333 567
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+..+.+.++|+|++++.+|+... .|+...+.+. +++-+++++||.||
T Consensus 79 YRGAAGAlLVYD~TsrdsfnaLt--nWL~DaR~lAs~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 79 YRGAAGALLVYDITSRDSFNALT--NWLTDARTLASPNIVVILCGNKKDL 126 (214)
T ss_pred hccccceEEEEeccchhhHHHHH--HHHHHHHhhCCCcEEEEEeCChhhc
Confidence 77788999999999999888766 7787777653 56778899999997
No 176
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.60 E-value=1.4e-14 Score=123.15 Aligned_cols=111 Identities=21% Similarity=0.311 Sum_probs=69.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe----cCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY----KYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~----~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
++|+++|++|||||||+++|.+..+... ++.+ ......... .+..+.+|||||+.. +...... .
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~--~~~~~~~~~~~~~~~~~~~l~D~pG~~~--------~~~~~~~-~ 68 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST-VTSI--EPNVATFILNSEGKGKKFRLVDVPGHPK--------LRDKLLE-T 68 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcE--eecceEEEeecCCCCceEEEEECCCCHH--------HHHHHHH-H
Confidence 3699999999999999999998765322 2222 222223322 256799999999831 1112222 2
Q ss_pred hccC-cEEEEEEeCCCC-CCCCHHHHHHHHHHH----hhccCCCcEEEEEeccCC
Q 040152 245 AHLR-SAVLFFLDISGS-CGYSIAQQAALFHSI----KSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~-d~il~v~D~s~~-~~~~~~~~~~~l~~l----~~~~~~~piivV~NK~Dl 293 (293)
...+ ++++||+|+++. ..+... ..++..+ .....+.|+++|+||+|+
T Consensus 69 ~~~~~~~vV~VvD~~~~~~~~~~~--~~~l~~il~~~~~~~~~~pvliv~NK~Dl 121 (203)
T cd04105 69 LKNSAKGIVFVVDSATFQKNLKDV--AEFLYDILTDLEKVKNKIPVLIACNKQDL 121 (203)
T ss_pred HhccCCEEEEEEECccchhHHHHH--HHHHHHHHHHHhhccCCCCEEEEecchhh
Confidence 3344 999999999985 222211 1222222 222257999999999996
No 177
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.59 E-value=9.2e-15 Score=124.74 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=73.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccc-------------------------------cCccceeeeeEEEEEecCceEE
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQ-------------------------------PYAFTTKSLFVGHTDYKYLRYQ 218 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~-------------------------------~~~~tt~~~~~~~~~~~~~~~~ 218 (293)
+|+++|.+|+|||||+++|+...-.+. ...++|.+.....+.+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999974321111 1256788888888888889999
Q ss_pred EEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 219 VIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 219 iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|||||+.+ +......+ ...+|++++|+|++++....... ....+.. ....++|+|+||+|+
T Consensus 81 liDTpG~~~--------~~~~~~~~-~~~ad~~llVvD~~~~~~~~~~~---~~~~~~~-~~~~~iIvviNK~D~ 142 (208)
T cd04166 81 IADTPGHEQ--------YTRNMVTG-ASTADLAILLVDARKGVLEQTRR---HSYILSL-LGIRHVVVAVNKMDL 142 (208)
T ss_pred EEECCcHHH--------HHHHHHHh-hhhCCEEEEEEECCCCccHhHHH---HHHHHHH-cCCCcEEEEEEchhc
Confidence 999999721 11122222 34579999999998753222221 2222222 122457889999995
No 178
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.59 E-value=9.3e-15 Score=116.64 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=65.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||+|++.+..+. +.. |. ..++.. .+|||||.... .. .. ...+......+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~~~~---~~iDt~G~~~~---~~-~~-~~~~~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVEYND---GAIDTPGEYVE---NR-RL-YSALIVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEEEcC---eeecCchhhhh---hH-HH-HHHHHHHhhcCC
Confidence 7999999999999999999988652 111 21 123332 68999997210 01 11 122222355689
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++... .|...+ ..|+++|+||+|+
T Consensus 65 ~vilv~d~~~~~s~~~~---~~~~~~-----~~p~ilv~NK~Dl 100 (142)
T TIGR02528 65 VIALVQSATDPESRFPP---GFASIF-----VKPVIGLVTKIDL 100 (142)
T ss_pred EEEEEecCCCCCcCCCh---hHHHhc-----cCCeEEEEEeecc
Confidence 99999999998776542 233322 3499999999996
No 179
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.59 E-value=1.9e-14 Score=118.52 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=76.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+..+|+++|++|||||||++++.+..+.. ...|.+.....+.+.+..+.+|||||... .. ........
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~--------~~-~~~~~~~~ 80 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRA--------IR-PYWRNYFE 80 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHH--------HH-HHHHHHhc
Confidence 36789999999999999999999876532 12233444456667778899999999721 11 11223345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|+++..++.... .++..+... ..+.|+++|+||+|+
T Consensus 81 ~~~~ii~v~D~~~~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 81 NTDCLIYVIDSADKKRLEEAG--AELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred CCCEEEEEEeCCCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECCCC
Confidence 579999999999865443222 233222211 246899999999995
No 180
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=1.4e-14 Score=141.13 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=82.3
Q ss_pred CCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC-chhHHHHHHHHHhhccCcEEEE
Q 040152 175 GYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DRNIIEMCSITALAHLRSAVLF 253 (293)
Q Consensus 175 G~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~-~~~~~e~~~~~~l~~~~d~il~ 253 (293)
|.||||||||+|++++.+..+++++++|.+...+.+.+++..+++|||||+.+.... ..+.+....+ ....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l--~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL--LNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH--hhcCCCEEEE
Confidence 899999999999999998888999999999999999998889999999999764321 1111111111 1234799999
Q ss_pred EEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 254 FLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 254 v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|+|+++.. +.+.+..++.+ .+.|+++|+||+|+
T Consensus 79 VvDat~le-----r~l~l~~ql~~--~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 79 VVDASNLE-----RNLYLTLQLLE--LGIPMILALNLVDE 111 (591)
T ss_pred EecCCcch-----hhHHHHHHHHh--cCCCEEEEEehhHH
Confidence 99998732 22344445544 47999999999995
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.58 E-value=5.2e-14 Score=118.38 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=75.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc--ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc--hhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV--DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED--RNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~--~~~~e~~~~~ 242 (293)
..++|+++|.+|||||||+|+|++..+ ..++.+++|....... + +..+.+|||||+......+ +..+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 567899999999999999999998753 3555666776654433 2 3679999999976432211 1111111111
Q ss_pred Hhh--ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALA--HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~--~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+. ...+++++|+|++.+...... .+...+.. .+.|+++|+||+|+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~---~i~~~l~~--~~~~~iiv~nK~Dl 147 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL---QMIEWLKE--YGIPVLIVLTKADK 147 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH---HHHHHHHH--cCCcEEEEEECccc
Confidence 111 123678899998875432221 22333333 37899999999996
No 182
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.57 E-value=2e-14 Score=120.46 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=76.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|++|+|||||++++....+.. .+..++.........+++. .+.+|||||........ ......
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~---------~~~~~~ 72 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLR---------PLSYSK 72 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccc---------hhhcCC
Confidence 79999999999999999998766643 2223333333444455543 47899999974321100 112244
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 73 a~~~llv~~i~~~~s~~~~~~-~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 73 AHVILIGFAVDTPDSLENVRT-KWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEeeChhh
Confidence 699999999998766554432 467777655567999999999996
No 183
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=126.57 Aligned_cols=94 Identities=29% Similarity=0.483 Sum_probs=78.1
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
....+++++|.|+||||||+|+|++.+..+++|+|||..+..|.+.++|..+|++|+||+++.....++.- .+ +-+..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG-~~-vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG-RQ-VLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc-ce-eeeee
Confidence 34569999999999999999999999999999999999999999999999999999999988654433210 11 22345
Q ss_pred ccCcEEEEEEeCCCCC
Q 040152 246 HLRSAVLFFLDISGSC 261 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~ 261 (293)
..||+|++|+|+....
T Consensus 139 R~ADlIiiVld~~~~~ 154 (365)
T COG1163 139 RNADLIIIVLDVFEDP 154 (365)
T ss_pred ccCCEEEEEEecCCCh
Confidence 6689999999998743
No 184
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.57 E-value=3.1e-14 Score=138.06 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=82.8
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc-eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
++.++|+++|.+|+|||||+++|.+..+.....+++|.+.....+.+++. .+.+|||||+.+.. .+ ....
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----~~----r~rg 155 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----SM----RARG 155 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchh-----hH----HHhh
Confidence 46789999999999999999999998887666677887777667777554 89999999984321 11 1123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|+++....... +.+..... .+.|+++++||+|+
T Consensus 156 a~~aDiaILVVda~dgv~~qT~---e~i~~~~~--~~vPiIVviNKiDl 199 (587)
T TIGR00487 156 AKVTDIVVLVVAADDGVMPQTI---EAISHAKA--ANVPIIVAINKIDK 199 (587)
T ss_pred hccCCEEEEEEECCCCCCHhHH---HHHHHHHH--cCCCEEEEEECccc
Confidence 4457999999999874322222 22333332 47899999999996
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.57 E-value=2.9e-14 Score=141.65 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=84.6
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..+.+.|+++|.+|+|||||+++|.+..+.....++.|.+.....+.+++..++||||||+.++. .+ ....
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-----~m----~~rg 357 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT-----AM----RARG 357 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccch-----hH----HHhh
Confidence 34678999999999999999999998887666667778777777788888889999999984431 11 1122
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|+++........ .+..... .+.|+|+|+||+|+
T Consensus 358 a~~aDiaILVVdAddGv~~qT~e---~i~~a~~--~~vPiIVviNKiDl 401 (787)
T PRK05306 358 AQVTDIVVLVVAADDGVMPQTIE---AINHAKA--AGVPIIVAINKIDK 401 (787)
T ss_pred hhhCCEEEEEEECCCCCCHhHHH---HHHHHHh--cCCcEEEEEECccc
Confidence 34469999999998753322222 2233332 47899999999996
No 186
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.55 E-value=5.5e-14 Score=120.39 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=76.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEE--e--cCceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTD--Y--KYLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~--~--~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
...+|+++|++|||||||++++....+.....+ |.+....... . +...+.+|||+|.... . ....
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-----~----~~~~ 76 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIP--TLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-----G----GLRD 76 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceEEEEEEEEECCeEEEEEEEECCCchhh-----h----hhhH
Confidence 456999999999999999988776655332222 3322222222 2 2356899999997221 1 1112
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+...++++++|+|+++..++.... .|+..+.....+.|+++|+||+|+
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVP--NWHRDIVRVCENIPIVLVGNKVDV 125 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccC
Confidence 3344569999999999977765444 567666655567899999999995
No 187
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.54 E-value=9.4e-14 Score=122.95 Aligned_cols=110 Identities=19% Similarity=0.163 Sum_probs=76.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc---c---------------cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADV---D---------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~---~---------------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
+|+++|.+|+|||||+++|....- . .....++|.+.....+.|++..+.+|||||+.+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 589999999999999999963110 0 11234677788888889999999999999984321
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+ .+.+|++++|+|+++.. .... ..++..+.. .++|+++|+||+|+
T Consensus 79 ------~~~~~~-l~~aD~ailVVDa~~g~--~~~t-~~~~~~~~~--~~~p~ivviNK~D~ 128 (270)
T cd01886 79 ------IEVERS-LRVLDGAVAVFDAVAGV--EPQT-ETVWRQADR--YNVPRIAFVNKMDR 128 (270)
T ss_pred ------HHHHHH-HHHcCEEEEEEECCCCC--CHHH-HHHHHHHHH--cCCCEEEEEECCCC
Confidence 122223 34469999999998743 2222 234444444 47899999999995
No 188
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=4.5e-14 Score=121.64 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=83.9
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...+.+|+++|.+|+|||||+|+|+..+.. ++..+.+|.........+++..+.+|||||..+....+. -..+.+..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~--~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA--EHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH--HHHHHHHH
Confidence 445678999999999999999999976655 333333444333334455667799999999987543331 11233344
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+....|++++++|+.++.--..+ +++..+.....+.++++|+|.+|.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~---~f~~dVi~~~~~~~~i~~VtQ~D~ 160 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE---DFLRDVIILGLDKRVLFVVTQADR 160 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH---HHHHHHHHhccCceeEEEEehhhh
Confidence 44446999999999997543333 345555544456899999999984
No 189
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.54 E-value=3.5e-14 Score=119.19 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=76.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCccc------------------ccCccceeeeeEEEEE--ecCceEEEEeCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDV------------------QPYAFTTKSLFVGHTD--YKYLRYQVIDTPGILD 227 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~------------------~~~~~tt~~~~~~~~~--~~~~~~~iiDTpG~~~ 227 (293)
..+|+++|+.++|||||+++|++..... ....+.|.......+. ..+..+.++||||+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 4689999999999999999997433210 1123456666666666 778899999999972
Q ss_pred CCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
......... ...+|++++|+|+.+.. .... .+.+..+.. .+.|+++|+||+|+
T Consensus 82 -------~f~~~~~~~-~~~~D~ailvVda~~g~--~~~~-~~~l~~~~~--~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 82 -------DFIKEMIRG-LRQADIAILVVDANDGI--QPQT-EEHLKILRE--LGIPIIVVLNKMDL 134 (188)
T ss_dssp -------HHHHHHHHH-HTTSSEEEEEEETTTBS--THHH-HHHHHHHHH--TT-SEEEEEETCTS
T ss_pred -------ceeecccce-ecccccceeeeeccccc--cccc-ccccccccc--cccceEEeeeeccc
Confidence 122223333 44579999999998743 3222 234445544 47899999999996
No 190
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.53 E-value=1.5e-13 Score=121.41 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=73.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc----------------cccC------ccceeeeeEEEEEecCceEEEEeCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD----------------VQPY------AFTTKSLFVGHTDYKYLRYQVIDTPGIL 226 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~----------------~~~~------~~tt~~~~~~~~~~~~~~~~iiDTpG~~ 226 (293)
++|+++|.+|+|||||+++|+...-. +.++ .+.|.......+++++..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 58999999999999999999742111 1111 1234445556778888999999999984
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.. ......+ ..+|++++|+|+++... ... ..+++.... .+.|+++++||+|+
T Consensus 83 df~--------~~~~~~l-~~aD~~IlVvda~~g~~--~~~-~~i~~~~~~--~~~P~iivvNK~D~ 135 (267)
T cd04169 83 DFS--------EDTYRTL-TAVDSAVMVIDAAKGVE--PQT-RKLFEVCRL--RGIPIITFINKLDR 135 (267)
T ss_pred HHH--------HHHHHHH-HHCCEEEEEEECCCCcc--HHH-HHHHHHHHh--cCCCEEEEEECCcc
Confidence 321 1122233 34699999999987432 221 133444333 47899999999995
No 191
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.53 E-value=9.5e-14 Score=120.73 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=74.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc------------c------ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD------------V------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~------------~------~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
+|+++|.+|+|||||+++|+...-. . ....+.|.......+.+++.++++|||||+.+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 5899999999999999999753211 0 0112345555667778888899999999985421
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+ ...+|++++|+|+++....... .+++.+.. .+.|+++|+||+|+
T Consensus 79 ------~~~~~~-l~~aD~~IlVvd~~~g~~~~~~---~~~~~~~~--~~~P~iivvNK~D~ 128 (237)
T cd04168 79 ------AEVERS-LSVLDGAILVISAVEGVQAQTR---ILWRLLRK--LNIPTIIFVNKIDR 128 (237)
T ss_pred ------HHHHHH-HHHhCeEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccc
Confidence 111222 3346999999999985432222 34444444 47899999999995
No 192
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=1.1e-13 Score=116.81 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=75.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc----------------ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV----------------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~----------------~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~ 232 (293)
.+|+++|.+|+|||||+++|++... ......++|.+.....+++++..+.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 4799999999999999999975310 011134667777666777777889999999972
Q ss_pred hhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 233 RNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 233 ~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
.+......++. .+|++++|+|++........ ..+..+.. .+.| +|+|+||+|+
T Consensus 77 --~~~~~~~~~~~-~~D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~~~iIvviNK~D~ 130 (195)
T cd01884 77 --DYIKNMITGAA-QMDGAILVVSATDGPMPQTR---EHLLLARQ--VGVPYIVVFLNKADM 130 (195)
T ss_pred --HHHHHHHHHhh-hCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCcEEEEEeCCCC
Confidence 12222333433 46999999999874322222 33444443 3566 7899999996
No 193
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.53 E-value=4.5e-14 Score=115.27 Aligned_cols=101 Identities=21% Similarity=0.156 Sum_probs=64.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||+|+|.+..... ..| +...+.+. .+|||||+..... .+....... ...+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~-----~~v~~~~~--~~iDtpG~~~~~~----~~~~~~~~~-~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKT-----QAVEFNDK--GDIDTPGEYFSHP----RWYHALITT-LQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccc-----eEEEECCC--CcccCCccccCCH----HHHHHHHHH-HhcCC
Confidence 79999999999999999998764211 112 22233322 3799999743221 111111222 44579
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++++|+|+++..++.. .++..+. .+.|+++|+||+|+
T Consensus 67 ~il~v~d~~~~~s~~~----~~~~~~~---~~~~ii~v~nK~Dl 103 (158)
T PRK15467 67 MLIYVHGANDPESRLP----AGLLDIG---VSKRQIAVISKTDM 103 (158)
T ss_pred EEEEEEeCCCcccccC----HHHHhcc---CCCCeEEEEEcccc
Confidence 9999999998755422 2333332 36799999999996
No 194
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=99.53 E-value=4.7e-14 Score=92.78 Aligned_cols=58 Identities=60% Similarity=0.907 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 235 IIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 235 ~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
.+|++++.++.|.+++|+|++|+|..||++.++|+.+++++++.|.++|+++|+||+|
T Consensus 1 ~IE~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 1 EIEMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred ChhHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3788999999999999999999999999999999999999999999999999999998
No 195
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.52 E-value=1.6e-13 Score=117.44 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=78.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---CceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
.+|+++|.+|||||||+++|.+..+.....+..+. ......... ...+.+|||+|+. . +. .....+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~~Dt~gq~------~--~~-~~~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGN-LDPAKTIEPYRRNIKLQLWDTAGQE------E--YR-SLRPEYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceee-eeEEEEEEeCCCEEEEEeecCCCHH------H--HH-HHHHHHh
Confidence 68999999999999999999998886443332222 222222222 3458999999982 1 11 1223455
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..++++++|+|.+...+..... ..|..++.... .+.|+++|+||+|+
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELT-EEWLEELRELAPDDVPILLVGNKIDL 123 (219)
T ss_pred cCCCEEEEEEecccchhhhHHH-HHHHHHHHHhCCCCceEEEEeccccc
Confidence 6689999999999844433322 26777777665 36899999999997
No 196
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.52 E-value=4.4e-14 Score=117.31 Aligned_cols=113 Identities=20% Similarity=0.321 Sum_probs=82.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|..||||||+++++....... ...|.+.....+.+.+..+.+||.+|.... ++ ....+..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~----~~-----~w~~y~~ 80 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKGYSLTIWDLGGQESF----RP-----LWKSYFQ 80 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETTEEEEEEEESSSGGG----GG-----GGGGGHT
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeeeCcEEEEEEeccccccc----cc-----cceeecc
Confidence 56799999999999999999998765432 233667778888889999999999997321 11 1123445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|+++||+|++++..+.... ..+.++... ..+.|+++++||+|+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~--~~L~~ll~~~~~~~~piLIl~NK~D~ 127 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAK--EELKELLNDPELKDIPILILANKQDL 127 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHH--HHHHHHHTSGGGTTSEEEEEEESTTS
T ss_pred ccceeEEEEecccceeecccc--cchhhhcchhhcccceEEEEeccccc
Confidence 579999999999865444332 344444332 357999999999995
No 197
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=2.9e-13 Score=107.54 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=83.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..+|+++|..|+||||++++|.+..... -..|.........+++..+++||..|+.. .+ .....+++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~~~~~~L~iwDvGGq~~----lr-----~~W~nYfes 83 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLEYKGYTLNIWDVGGQKT----LR-----SYWKNYFES 83 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEEecceEEEEEEcCCcch----hH-----HHHHHhhhc
Confidence 4589999999999999999999987542 22477888888999999999999999832 12 233456667
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHh--hccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIK--SLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~--~~~~~~piivV~NK~Dl 293 (293)
.|+++||+|++++..+..-. ..+.++- +...+.|+++++||.|+
T Consensus 84 tdglIwvvDssD~~r~~e~~--~~L~~lL~eerlaG~~~Lvlank~dl 129 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECK--QELTELLVEERLAGAPLLVLANKQDL 129 (185)
T ss_pred cCeEEEEEECchHHHHHHHH--HHHHHHHhhhhhcCCceEEEEecCcC
Confidence 89999999999976554322 2222221 12357899999999996
No 198
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.50 E-value=2.1e-13 Score=134.44 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=79.1
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec----CceEEEEeCCCCCCCCCCchhHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK----YLRYQVIDTPGILDRPFEDRNIIEMCSI 241 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~----~~~~~iiDTpG~~~~~~~~~~~~e~~~~ 241 (293)
.+.+.|+++|++|+|||||+++|.+..+.....++.|.+.....+.+. +..+.||||||+.. +. ...
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~--------F~-~mr 312 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA--------FS-SMR 312 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHH--------HH-HHH
Confidence 467799999999999999999999887765555566655544444432 46799999999721 11 111
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
......+|++++|+|+++.......+ .+..+.. .+.|+|+|+||+|+
T Consensus 313 ~rg~~~aDiaILVVDA~dGv~~QT~E---~I~~~k~--~~iPiIVViNKiDl 359 (742)
T CHL00189 313 SRGANVTDIAILIIAADDGVKPQTIE---AINYIQA--ANVPIIVAINKIDK 359 (742)
T ss_pred HHHHHHCCEEEEEEECcCCCChhhHH---HHHHHHh--cCceEEEEEECCCc
Confidence 22345579999999998754333332 2333333 47899999999996
No 199
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.50 E-value=2.6e-13 Score=120.20 Aligned_cols=110 Identities=23% Similarity=0.234 Sum_probs=73.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc------c------cc------CccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD------V------QP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~------~------~~------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
+|+++|.+|+|||||+++|...... + .+ ..+.|.......+.+++..+++|||||+.+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 5899999999999999999743211 1 01 1133445556677888889999999998321
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
......+ ...+|++++|+|++......... .+..+.. .+.|.++|+||+|+
T Consensus 78 -----~~~~~~~-l~~aD~~i~Vvd~~~g~~~~~~~---~~~~~~~--~~~p~iivvNK~D~ 128 (268)
T cd04170 78 -----VGETRAA-LRAADAALVVVSAQSGVEVGTEK---LWEFADE--AGIPRIIFINKMDR 128 (268)
T ss_pred -----HHHHHHH-HHHCCEEEEEEeCCCCCCHHHHH---HHHHHHH--cCCCEEEEEECCcc
Confidence 1122223 33469999999999854433232 3333333 47899999999995
No 200
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.50 E-value=2.6e-13 Score=110.26 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=69.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC--chhHHHHHHHHH--
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE--DRNIIEMCSITA-- 243 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~--~~~~~e~~~~~~-- 243 (293)
.|+++|.+|+|||||+|.+++.... .++.+++|..... ...+ ..+.+|||||+...... ....+.......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 3899999999999999999954432 4455555554433 2333 27899999998654221 111111111111
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+++++++|.+........ .....+.. .+.|+++|+||+|+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~---~~~~~l~~--~~~~vi~v~nK~D~ 122 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL---EMLDWLEE--LGIPFLVVLTKADK 122 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH---HHHHHHHH--cCCCEEEEEEchhc
Confidence 11223688999999875332222 22333333 35899999999995
No 201
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.50 E-value=3.7e-13 Score=119.56 Aligned_cols=122 Identities=21% Similarity=0.268 Sum_probs=75.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccccc---------Cccce-eeeeEEEEEecC--ceEEEEeCCCCCCCCCCc--
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQP---------YAFTT-KSLFVGHTDYKY--LRYQVIDTPGILDRPFED-- 232 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~---------~~~tt-~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~-- 232 (293)
..++|+++|.+|+|||||+|+|++..+.... ...|+ .......+..++ ..+.+|||||+.+.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 4579999999999999999999988765332 22222 233333444455 358999999998753211
Q ss_pred ----hhHHHHHH---H-------H-Hhhc--cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 ----RNIIEMCS---I-------T-ALAH--LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 ----~~~~e~~~---~-------~-~l~~--~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.++++.+. + + .... .+|+++|+++++.. +....+ ++.++.+.. ..|+++|+||+|+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D-~~~lk~l~~---~v~vi~VinK~D~ 155 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD-IEFMKRLSK---RVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH-HHHHHHHhc---cCCEEEEEECCCc
Confidence 01111110 0 0 0011 24789999998863 333332 356666654 6899999999995
No 202
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.49 E-value=3.2e-13 Score=131.44 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=77.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC---cccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 170 TILICGYPNVGKSSFMNKITRAD---VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~---~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.|+++|.+|+|||||+++|++.. +.....+++|.+.....+.+++..+.+|||||+ +. +... ......
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh------e~--f~~~-~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH------EK--FISN-AIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH------HH--HHHH-HHhhhc
Confidence 68999999999999999999754 223345577888777778888888999999997 21 1112 223344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
.+|++++|+|+++.......+. +..+.. .+.| +++|+||+|+
T Consensus 73 ~aD~aILVVDa~~G~~~qT~eh---l~il~~--lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEH---LAVLDL--LGIPHTIVVITKADR 115 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHH---HHHHHH--cCCCeEEEEEECCCC
Confidence 5799999999998432222222 222322 3677 9999999996
No 203
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.49 E-value=2.1e-13 Score=107.82 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=70.2
Q ss_pred ecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe--cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcE
Q 040152 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY--KYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSA 250 (293)
Q Consensus 173 vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (293)
++|.+|+|||||+|++.+..........+........... .+..+.+|||||..+.. .........+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR---------SLRRLYYRGADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHH---------hHHHHHhcCCCE
Confidence 5899999999999999988763223223333333333332 24568999999973211 111233455799
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 251 VLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 251 il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+++|+|++++.+......+.+.........+.|+++|+||+|+
T Consensus 72 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 72 IILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 9999999986544433322112222222358999999999995
No 204
>PTZ00258 GTP-binding protein; Provisional
Probab=99.49 E-value=3.8e-13 Score=123.83 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc-----------------eEEEEeCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRP 229 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~iiDTpG~~~~~ 229 (293)
...+|+++|.||||||||+|+|++....++++||||+++..+.+.+.+. .+.++||||+....
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 5568999999999999999999999999999999999999999887643 48999999997543
Q ss_pred CCchhHHHHHHHHHhhccCcEEEEEEeCC
Q 040152 230 FEDRNIIEMCSITALAHLRSAVLFFLDIS 258 (293)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~v~D~s 258 (293)
... ..+..+.+..+.+ +|++++|+|+.
T Consensus 100 ~~g-~gLg~~fL~~Ir~-aD~il~VVd~f 126 (390)
T PTZ00258 100 SEG-EGLGNAFLSHIRA-VDGIYHVVRAF 126 (390)
T ss_pred cch-hHHHHHHHHHHHH-CCEEEEEEeCC
Confidence 322 2233344444433 69999999985
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.49 E-value=3.8e-13 Score=130.36 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=72.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec------------------CceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------------YLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~~~iiDTpG~~~~ 228 (293)
+.+.|+++|.+|+|||||+|+|.+..+......++|.+.....+..+ ...+.+|||||+...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45689999999999999999999887754333334443222222111 123889999997211
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+ .......+|++++|+|+++....... ..+..++. .+.|+++|+||+|+
T Consensus 83 -----~~l----~~~~~~~aD~~IlVvD~~~g~~~qt~---e~i~~l~~--~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 83 -----TNL----RKRGGALADLAILIVDINEGFKPQTQ---EALNILRM--YKTPFVVAANKIDR 133 (590)
T ss_pred -----HHH----HHHHHhhCCEEEEEEECCcCCCHhHH---HHHHHHHH--cCCCEEEEEECCCc
Confidence 111 12234567999999999974332222 22333333 47899999999996
No 206
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.48 E-value=3.7e-13 Score=118.81 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=68.2
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc-----------------eEEEEeCCCCCCCCCCch
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRPFEDR 233 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~iiDTpG~~~~~~~~~ 233 (293)
|+++|.||||||||+|+|++.+..++++||||.++..+.+.+.+. .++++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~- 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG- 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh-
Confidence 578999999999999999999999999999999999999888764 38999999998543222
Q ss_pred hHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 234 NIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 234 ~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
..+..+.+..+. .+|++++|+|+.+
T Consensus 80 ~glg~~fL~~i~-~~D~li~VV~~f~ 104 (274)
T cd01900 80 EGLGNKFLSHIR-EVDAIAHVVRCFE 104 (274)
T ss_pred hHHHHHHHHHHH-hCCEEEEEEeCcC
Confidence 122223334433 3699999999853
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.48 E-value=5.6e-13 Score=114.62 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=73.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc-------------------------------ccccCccceeeeeEEEEEecCceEE
Q 040152 170 TILICGYPNVGKSSFMNKITRADV-------------------------------DVQPYAFTTKSLFVGHTDYKYLRYQ 218 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~-------------------------------~~~~~~~tt~~~~~~~~~~~~~~~~ 218 (293)
+|+++|.+++|||||+.+|+...- ......++|.+.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999852110 0111346788888888889999999
Q ss_pred EEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCC---CCHHHH-HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 219 VIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCG---YSIAQQ-AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 219 iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~---~~~~~~-~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|||||+.+ .. ...+.. ...+|++++|+|+++... +....+ ...+..... ....|+++|+||+|+
T Consensus 81 liDtpG~~~-------~~-~~~~~~-~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHRD-------FV-PNMITG-ASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChHH-------HH-HHHHHH-hhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cCCCeEEEEEEcccc
Confidence 999999721 11 122222 344799999999998421 111111 111222222 123689999999996
No 208
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=2.9e-13 Score=114.54 Aligned_cols=112 Identities=23% Similarity=0.250 Sum_probs=68.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCc-----cceeeeeEEEEEe-cCceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYA-----FTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~-----~tt~~~~~~~~~~-~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
.+|+++|.+|||||||+|+|++......... .+|... ..+.. ....+.+|||||+.+........++.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~---- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE---- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCCCCCceEEeCCCCCcccCCHHHHHHH----
Confidence 4799999999999999999998654211111 122211 11111 12468999999997643322222221
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+|++++|.|. +++..+ ..+++.++. .+.|+++|+||+|+
T Consensus 76 ~~~~~~d~~l~v~~~----~~~~~d-~~~~~~l~~--~~~~~ilV~nK~D~ 119 (197)
T cd04104 76 MKFSEYDFFIIISST----RFSSND-VKLAKAIQC--MGKKFYFVRTKVDR 119 (197)
T ss_pred hCccCcCEEEEEeCC----CCCHHH-HHHHHHHHH--hCCCEEEEEecccc
Confidence 112335888887432 234333 356777766 36899999999995
No 209
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.47 E-value=4.1e-13 Score=114.94 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=68.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccc-------------------cCccceeeeeEEEEEec-----CceEEEEeCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQ-------------------PYAFTTKSLFVGHTDYK-----YLRYQVIDTPGI 225 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~-------------------~~~~tt~~~~~~~~~~~-----~~~~~iiDTpG~ 225 (293)
+|+++|.+|+|||||+++|+....... ...+.|.......+.+. ...+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 799999999999999999986543221 00112222222222222 246899999998
Q ss_pred CCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 226 LDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+.. ..... ....+|++++|+|+++..+.... .++..... .+.|+++|+||+|+
T Consensus 82 ~~f~--------~~~~~-~~~~aD~~llVvD~~~~~~~~~~---~~~~~~~~--~~~p~iiviNK~D~ 135 (213)
T cd04167 82 VNFM--------DEVAA-ALRLSDGVVLVVDVVEGVTSNTE---RLIRHAIL--EGLPIVLVINKIDR 135 (213)
T ss_pred cchH--------HHHHH-HHHhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccc
Confidence 5321 11122 23346999999999875443221 34444433 36899999999995
No 210
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.47 E-value=3e-13 Score=127.47 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=77.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-------------------------------cccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-------------------------------VQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-------------------------------~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|.+|+|||||+++|+...-. ....+++|.+.....+++++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 3468999999999999999999743211 111467899998888888888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+.+|||||+.+.. . ..... ...+|++++|+|++++.+...... +.+..+... ...|+++|+||+|+
T Consensus 85 ~i~liDtpG~~~~~---~-----~~~~~-~~~aD~~ilVvDa~~~~~~~~~~~-~~~~~~~~~-~~~~iivviNK~Dl 151 (425)
T PRK12317 85 YFTIVDCPGHRDFV---K-----NMITG-ASQADAAVLVVAADDAGGVMPQTR-EHVFLARTL-GINQLIVAINKMDA 151 (425)
T ss_pred EEEEEECCCcccch---h-----hHhhc-hhcCCEEEEEEEcccCCCCCcchH-HHHHHHHHc-CCCeEEEEEEcccc
Confidence 99999999973211 0 11122 345799999999997322222211 122222221 23469999999996
No 211
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.46 E-value=2.5e-14 Score=112.79 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=82.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccccc-----CccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQP-----YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~-----~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~ 241 (293)
-.++|+++|.--||||||+-++...+|.... ..|.++...++.. ...+.||||+|+ ++ +.++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~---ra~L~IWDTAGQ------Er----fHAL 78 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDC---RADLHIWDTAGQ------ER----FHAL 78 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccc---eeeeeeeeccch------Hh----hhcc
Confidence 4579999999999999999999988875433 2344444443322 235899999998 32 2233
Q ss_pred -HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 242 -TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 242 -~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..++...+++++|+|++++.+|...+ .|..+++... ...-+++|+||+||
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVK--nWV~Elr~mlGnei~l~IVGNKiDL 130 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVK--NWVLELRTMLGNEIELLIVGNKIDL 130 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHH--HHHHHHHHHhCCeeEEEEecCcccH
Confidence 23455679999999999998887665 7888887653 45788999999997
No 212
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.9e-13 Score=104.90 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=84.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccc-eeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-H
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFT-TKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-T 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~t-t~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~ 242 (293)
-.++..++|..|||||+|+..++..++. ++.|.| ........++..+. ++++|||+|+ ++ +.++ +
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfm-adcphtigvefgtriievsgqkiklqiwdtagq------er----fravtr 78 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ------ER----FRAVTR 78 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHh-hcCCcccceecceeEEEecCcEEEEEEeecccH------HH----HHHHHH
Confidence 3568899999999999999999988873 344432 23333444555554 5799999997 43 2333 5
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
.++..+.+.++|+|++.++.++... .|+...+.+ .++..+++++||.||
T Consensus 79 syyrgaagalmvyditrrstynhls--swl~dar~ltnpnt~i~lignkadl 128 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIFLIGNKADL 128 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHH--HHHhhhhccCCCceEEEEecchhhh
Confidence 6677788999999999999888777 677777665 356778999999996
No 213
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.46 E-value=2.6e-13 Score=114.42 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=83.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||+|+.++.+..+. ..|.+|..+.+......++. .+.|+||+|..+.+ .+. ..+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~-----~~~----~~~~ 72 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS-----AMR----DLYI 72 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCEEEEEEEEcCCCcccCh-----HHH----HHhh
Confidence 458999999999999999999998884 45666666777777777765 46899999953322 111 2233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...|++++|++++++.+|.....+ ...+... ....|+++|+||+||
T Consensus 73 ~~~~gF~lVysitd~~SF~~~~~l--~~~I~r~~~~~~~PivlVGNK~Dl 120 (196)
T KOG0395|consen 73 RNGDGFLLVYSITDRSSFEEAKQL--REQILRVKGRDDVPIILVGNKCDL 120 (196)
T ss_pred ccCcEEEEEEECCCHHHHHHHHHH--HHHHHHhhCcCCCCEEEEEEcccc
Confidence 345999999999999998877643 4444211 135799999999997
No 214
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=9.2e-13 Score=120.03 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=70.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc-----------------eEEEEeCCCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRPFE 231 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~iiDTpG~~~~~~~ 231 (293)
.+|+++|.||||||||+|+|++....++++||||.++..+.+.+.+. .+.++||||+......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 47999999999999999999999988999999999999998887652 4899999999764322
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
. ..+..+.+..+. .+|++++|+|++.
T Consensus 83 g-~glg~~fL~~i~-~aD~li~VVd~f~ 108 (364)
T PRK09601 83 G-EGLGNQFLANIR-EVDAIVHVVRCFE 108 (364)
T ss_pred H-HHHHHHHHHHHH-hCCEEEEEEeCCc
Confidence 2 223334444443 3699999999964
No 215
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.45 E-value=8.9e-13 Score=113.32 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=69.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccc----------------cCccceeeeeEEEEEec----------CceEEEEeC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQ----------------PYAFTTKSLFVGHTDYK----------YLRYQVIDT 222 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~----------------~~~~tt~~~~~~~~~~~----------~~~~~iiDT 222 (293)
++|+++|..++|||||+.+|....-... ...+.|.........+. +..+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999974321110 01122333222223333 456899999
Q ss_pred CCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 223 PGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 223 pG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
||+.+.. .....+ ...+|++++|+|+++....... .+++.... .+.|+++|+||+|+
T Consensus 81 PG~~~f~--------~~~~~~-l~~aD~~ilVvD~~~g~~~~t~---~~l~~~~~--~~~p~ilviNKiD~ 137 (222)
T cd01885 81 PGHVDFS--------SEVTAA-LRLCDGALVVVDAVEGVCVQTE---TVLRQALK--ERVKPVLVINKIDR 137 (222)
T ss_pred CCccccH--------HHHHHH-HHhcCeeEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECCCc
Confidence 9985421 112222 3446999999999986443332 33444333 36899999999995
No 216
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.45 E-value=5.7e-13 Score=114.00 Aligned_cols=119 Identities=24% Similarity=0.277 Sum_probs=74.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCccccc--CccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHH--HHHHHhh
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQP--YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEM--CSITALA 245 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~--~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~--~~~~~l~ 245 (293)
+|+++|.+|+||||++|.++|....... ....|.........+++..+.++||||+.+........... .++....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 6999999999999999999998865322 33456677777778899999999999997765433222211 1222234
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC---CCcEEEEEeccC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM---NKPLIIVCNKTD 292 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~---~~piivV~NK~D 292 (293)
...+++|+|+..+ + ++..+. ..++.+...|. -..+++|++..|
T Consensus 82 ~g~ha~llVi~~~-r--~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-R--FTEEDR-EVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp T-ESEEEEEEETT-B---SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred CCCeEEEEEEecC-c--chHHHH-HHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 4568999999998 2 343332 44445544432 246888888776
No 217
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.44 E-value=1.1e-12 Score=118.31 Aligned_cols=87 Identities=33% Similarity=0.483 Sum_probs=66.2
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe------------------------cCceEEEEeCCCCC
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY------------------------KYLRYQVIDTPGIL 226 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~~~iiDTpG~~ 226 (293)
|+++|.||||||||+|+|++..+.++++||+|.+++.+...+ .+.++++|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999999998999999999998876654 22468999999996
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
...... ..+..+.+..+ ..+|++++|+|++.
T Consensus 81 ~ga~~~-~glg~~fL~~i-r~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEG-KGLGNKFLDDL-RDADALIHVVDASG 111 (318)
T ss_pred CCccch-hhHHHHHHHHH-HHCCEEEEEEeCCC
Confidence 543222 12222333333 34699999999984
No 218
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.44 E-value=1.3e-12 Score=121.45 Aligned_cols=89 Identities=34% Similarity=0.489 Sum_probs=67.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe------------------------cCceEEEEeCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY------------------------KYLRYQVIDTPG 224 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~~~iiDTpG 224 (293)
++|+++|.||||||||+|+|++..+.++++||+|.++..+.... ....+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 47999999999999999999999998999999999998876542 124589999999
Q ss_pred CCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 225 ILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 225 ~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
+....... ..+..+.+..+. .+|++++|+|++.
T Consensus 82 l~~ga~~g-~glg~~fL~~ir-~ad~ll~Vvd~~~ 114 (396)
T PRK09602 82 LVPGAHEG-RGLGNQFLDDLR-QADALIHVVDASG 114 (396)
T ss_pred cCCCccch-hhHHHHHHHHHH-HCCEEEEEEeCCC
Confidence 97543221 122223344443 3699999999983
No 219
>CHL00071 tufA elongation factor Tu
Probab=99.43 E-value=1.5e-12 Score=122.13 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=76.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc----------------cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD----------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~----------------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|.+|+|||||+++|++.... .....++|.+.....+..++..+.++||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 4568999999999999999999864211 11235677777666666677789999999972
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
.+-...+..+. .+|++++|+|++... .... .+.+..+.. .+.| +|+|+||+|+
T Consensus 87 ----~~~~~~~~~~~-~~D~~ilVvda~~g~--~~qt-~~~~~~~~~--~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 87 ----DYVKNMITGAA-QMDGAILVVSAADGP--MPQT-KEHILLAKQ--VGVPNIVVFLNKEDQ 140 (409)
T ss_pred ----HHHHHHHHHHH-hCCEEEEEEECCCCC--cHHH-HHHHHHHHH--cCCCEEEEEEEccCC
Confidence 11122333433 469999999998743 2221 133444433 3678 7789999996
No 220
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.43 E-value=4.2e-12 Score=109.99 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeE-----------EEE-------------------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFV-----------GHT------------------------- 210 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~-----------~~~------------------------- 210 (293)
..+.++++|+.|+||||+++++++..+........|+.+.. ...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999875321111111111100 000
Q ss_pred -------------Ee--c-CceEEEEeCCCCCCCCCC-----chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHH
Q 040152 211 -------------DY--K-YLRYQVIDTPGILDRPFE-----DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269 (293)
Q Consensus 211 -------------~~--~-~~~~~iiDTpG~~~~~~~-----~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~ 269 (293)
+. + ...+.++||||+...+.. ....++.+....+.+..+++|+|+|++.. ....+.+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d--~~~~d~l 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD--LANSDAL 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC--CCchhHH
Confidence 00 0 135899999999754211 12233334445555556799999998763 2333333
Q ss_pred HHHHHHhhccCCCcEEEEEeccCC
Q 040152 270 ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 270 ~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++.+.+.. .+.|+++|+||+|.
T Consensus 183 ~ia~~ld~--~~~rti~ViTK~D~ 204 (240)
T smart00053 183 KLAKEVDP--QGERTIGVITKLDL 204 (240)
T ss_pred HHHHHHHH--cCCcEEEEEECCCC
Confidence 56666665 57899999999995
No 221
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.42 E-value=1.7e-12 Score=129.15 Aligned_cols=113 Identities=22% Similarity=0.195 Sum_probs=80.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc------cc------------cCccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD------VQ------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~------~~------------~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
+.++|+++|.+|+|||||+++|....-. +. ...++|.+.....+.+++..+.+|||||+.+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 4569999999999999999999632110 11 13467888888899999999999999999643
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. ....++ ..+|++++|+|+++....... .++..+.. .+.|+++|+||+|+
T Consensus 89 ~~--------~~~~~l-~~~D~~ilVvda~~g~~~~~~---~~~~~~~~--~~~p~ivviNK~D~ 139 (689)
T TIGR00484 89 TV--------EVERSL-RVLDGAVAVLDAVGGVQPQSE---TVWRQANR--YEVPRIAFVNKMDK 139 (689)
T ss_pred hH--------HHHHHH-HHhCEEEEEEeCCCCCChhHH---HHHHHHHH--cCCCEEEEEECCCC
Confidence 21 112222 335999999999885433322 33444443 47899999999996
No 222
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.42 E-value=2.9e-12 Score=108.93 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=64.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc--c-ccCccceeeeeEEEEEec---------------------------C-----
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD--V-QPYAFTTKSLFVGHTDYK---------------------------Y----- 214 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~--~-~~~~~tt~~~~~~~~~~~---------------------------~----- 214 (293)
+|+++|..|+|||||+.+|++.... . ....+.|.......+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6899999999999999999765211 0 001111211111111111 2
Q ss_pred -ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCC-CCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 215 -LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCG-YSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 215 -~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~-~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
..+.+|||||+ + .+....+..+ ..+|++++|+|++++.. ......+ ..+... ...|+++|+||+|
T Consensus 82 ~~~i~~iDtPG~------~--~~~~~~~~~~-~~~D~~llVvd~~~~~~~~~t~~~l---~~~~~~-~~~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGH------E--ILMATMLSGA-AVMDGALLLIAANEPCPQPQTSEHL---AALEIM-GLKHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCCh------H--HHHHHHHHhh-hcCCEEEEEEECCCCCCCcchHHHH---HHHHHc-CCCcEEEEEEchh
Confidence 56899999996 1 1222233333 34699999999997421 2222222 222221 2357999999999
Q ss_pred C
Q 040152 293 L 293 (293)
Q Consensus 293 l 293 (293)
+
T Consensus 149 l 149 (203)
T cd01888 149 L 149 (203)
T ss_pred c
Confidence 6
No 223
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.41 E-value=5.2e-13 Score=106.00 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=82.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC---ceEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~---~~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
.+++.++|++-||||||+..++..++..-..|....+.....++... .++++|||+|+ ++ +.++ ..
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq------er----frsitks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ------ER----FRSITKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch------HH----HHHHHHH
Confidence 46889999999999999999999888754445444455444444432 46899999998 33 2333 44
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCc-EEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKP-LIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~p-iivV~NK~Dl 293 (293)
++...-++++|+|++++.+|+... .|+.+..-.. +.++ ..+|+.|+||
T Consensus 78 yyrnsvgvllvyditnr~sfehv~--~w~~ea~m~~q~P~k~VFlLVGhKsDL 128 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVE--NWVKEAAMATQGPDKVVFLLVGHKSDL 128 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHH--HHHHHHHHhcCCCCeeEEEEeccccch
Confidence 555556899999999999998877 6776655432 3344 4699999997
No 224
>PLN03127 Elongation factor Tu; Provisional
Probab=99.40 E-value=2.7e-12 Score=121.21 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=76.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC------Cc----------ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA------DV----------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~------~~----------~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|..++|||||+++|++. .. ..+...++|.+.....++.++..+.++||||+.+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 4568999999999999999999732 11 0122367788877777777777899999999832
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
.+ ......+. .+|++++|+|+++....... +.+..+.. .+.| +|+|+||+|+
T Consensus 137 ----f~-~~~~~g~~-~aD~allVVda~~g~~~qt~---e~l~~~~~--~gip~iIvviNKiDl 189 (447)
T PLN03127 137 ----YV-KNMITGAA-QMDGGILVVSAPDGPMPQTK---EHILLARQ--VGVPSLVVFLNKVDV 189 (447)
T ss_pred ----hH-HHHHHHHh-hCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCeEEEEEEeecc
Confidence 11 12223333 37999999999874322222 33444443 3678 5789999996
No 225
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.40 E-value=2.7e-13 Score=112.03 Aligned_cols=114 Identities=19% Similarity=0.323 Sum_probs=60.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe---cCceEEEEeCCCCCCCCCCchhHHHHHHHHH-
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY---KYLRYQVIDTPGILDRPFEDRNIIEMCSITA- 243 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~---~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~- 243 (293)
.+.|+++|++|+|||+|+..|........ .|+...... ... .+..+.++|+||+..- +. ..+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T---~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rl----r~----~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT---VTSMENNIA-YNVNNSKGKKLRLVDIPGHPRL----RS----KLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------SSEEEE-CCGSSTCGTCECEEEETT-HCC----CH----HHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe---eccccCCce-EEeecCCCCEEEEEECCCcHHH----HH----HHHHhh
Confidence 35799999999999999999998744211 122222222 222 3457999999998321 21 11222
Q ss_pred -hhccCcEEEEEEeCCCC-CCC-CHHHH-HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 -LAHLRSAVLFFLDISGS-CGY-SIAQQ-AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 -l~~~~d~il~v~D~s~~-~~~-~~~~~-~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+.+|+||+|++.. ... +.++. +.++..........|+++++||+|+
T Consensus 71 ~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl 124 (181)
T PF09439_consen 71 KYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDL 124 (181)
T ss_dssp HHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTS
T ss_pred hchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccc
Confidence 23335799999999741 000 01111 1222222222357899999999996
No 226
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.40 E-value=3.7e-12 Score=123.90 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec------------------CceEEEEeCCCCCC
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------------YLRYQVIDTPGILD 227 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~~~iiDTpG~~~ 227 (293)
.+++.|+++|.+|+|||||+++|.+..+........|.+......... ...+.+|||||+.+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 467789999999999999999998776532222223332211111110 01278999999832
Q ss_pred CCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. .. . .......+|++++|+|+++....... ..+..+.. .+.|+++|+||+|+
T Consensus 84 f-----~~---~-~~~~~~~aD~~IlVvDa~~g~~~qt~---e~i~~~~~--~~vpiIvviNK~D~ 135 (586)
T PRK04004 84 F-----TN---L-RKRGGALADIAILVVDINEGFQPQTI---EAINILKR--RKTPFVVAANKIDR 135 (586)
T ss_pred H-----HH---H-HHHhHhhCCEEEEEEECCCCCCHhHH---HHHHHHHH--cCCCEEEEEECcCC
Confidence 1 11 1 11223447999999999874222222 22333333 47899999999995
No 227
>PRK10218 GTP-binding protein; Provisional
Probab=99.40 E-value=3.4e-12 Score=124.20 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=77.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC--ccc--------------ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD--VDV--------------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~--~~~--------------~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
+.++|+++|..++|||||+++|+... +.. ....+.|.......+.+++..+++|||||+.+...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 35689999999999999999998632 110 11234566666667788888999999999854321
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. .......+|++++|+|+++....... .++..+.. .+.|.++|+||+|+
T Consensus 84 --------~-v~~~l~~aDg~ILVVDa~~G~~~qt~---~~l~~a~~--~gip~IVviNKiD~ 132 (607)
T PRK10218 84 --------E-VERVMSMVDSVLLVVDAFDGPMPQTR---FVTKKAFA--YGLKPIVVINKVDR 132 (607)
T ss_pred --------H-HHHHHHhCCEEEEEEecccCccHHHH---HHHHHHHH--cCCCEEEEEECcCC
Confidence 1 12233457999999999874322222 23333333 47899999999995
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.39 E-value=3.7e-12 Score=118.89 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=74.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC-------Cc---------ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA-------DV---------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~-------~~---------~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|.+++|||||+++|++. .+ ......++|.+.....+..++..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 3468999999999999999999862 11 011234667776666666667789999999972
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEE-EEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLI-IVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~pii-vV~NK~Dl 293 (293)
.+-......+ ..+|++++|+|+++....... +.+..+.. .+.|.+ +|+||+|+
T Consensus 87 ----~f~~~~~~~~-~~aD~~llVvda~~g~~~qt~---e~l~~~~~--~gi~~iivvvNK~Dl 140 (396)
T PRK12735 87 ----DYVKNMITGA-AQMDGAILVVSAADGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDM 140 (396)
T ss_pred ----HHHHHHHhhh-ccCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCeEEEEEEecCC
Confidence 1112223333 346999999999874322222 33333333 367855 68999996
No 229
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.39 E-value=4.2e-12 Score=123.81 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=71.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCccc---------cc------CccceeeeeEEEEEec---C--ceEEEEeCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDV---------QP------YAFTTKSLFVGHTDYK---Y--LRYQVIDTPGILD 227 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~---------~~------~~~tt~~~~~~~~~~~---~--~~~~iiDTpG~~~ 227 (293)
.++|+++|.+|+|||||+++|+.....+ .+ ..+.|.......+.|. + ..+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999997642111 11 1234444444444442 2 4689999999843
Q ss_pred CCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. .. .......+|++++|+|+++........ .|...+. .+.|+++|+||+|+
T Consensus 83 F~--------~~-v~~~l~~aD~aILVvDat~g~~~qt~~--~~~~~~~---~~ipiIiViNKiDl 134 (595)
T TIGR01393 83 FS--------YE-VSRSLAACEGALLLVDAAQGIEAQTLA--NVYLALE---NDLEIIPVINKIDL 134 (595)
T ss_pred HH--------HH-HHHHHHhCCEEEEEecCCCCCCHhHHH--HHHHHHH---cCCCEEEEEECcCC
Confidence 21 11 112234469999999999865444333 2222222 37899999999996
No 230
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.39 E-value=4e-12 Score=123.71 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=77.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC--cc----c----------ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD--VD----V----------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~--~~----~----------~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~ 232 (293)
++|+++|..++|||||+++|+... +. + ....+.|.......+.|++..+++|||||+.+..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~--- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG--- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---
Confidence 489999999999999999997521 11 1 1123566666677788999999999999984321
Q ss_pred hhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 RNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 ~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. +......+|++++|+|+++.. ... ...++..+.. .+.|+++|+||+|+
T Consensus 79 -----~e-v~~~l~~aD~alLVVDa~~G~--~~q-T~~~l~~a~~--~~ip~IVviNKiD~ 128 (594)
T TIGR01394 79 -----GE-VERVLGMVDGVLLLVDASEGP--MPQ-TRFVLKKALE--LGLKPIVVINKIDR 128 (594)
T ss_pred -----HH-HHHHHHhCCEEEEEEeCCCCC--cHH-HHHHHHHHHH--CCCCEEEEEECCCC
Confidence 01 122234469999999998742 222 1245555544 47899999999995
No 231
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.39 E-value=3.6e-12 Score=120.18 Aligned_cols=117 Identities=16% Similarity=0.101 Sum_probs=76.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-------------------------------cccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-------------------------------VQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-------------------------------~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|..++|||||+++|+...-. .....+.|.+.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 4568999999999999999999742110 011336778887778888888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+.+|||||+. ..+ ...... ...+|++++|+|+++...+........+..... ....|+++|+||+|+
T Consensus 86 ~i~iiDtpGh~-------~f~-~~~~~~-~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 86 EVTIVDCPGHR-------DFI-KNMITG-ASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDS 153 (426)
T ss_pred EEEEEECCCHH-------HHH-HHHHhh-hhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhc
Confidence 99999999972 111 112222 344799999999998643211111111111221 123579999999996
No 232
>PRK12739 elongation factor G; Reviewed
Probab=99.39 E-value=3.7e-12 Score=126.71 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=80.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc---c---cc------------cCccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV---D---VQ------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~---~---~~------------~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
+.++|+++|.+|+|||||+++|+...- . +. ...++|.+.....+.+++..+.++||||+.+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 456899999999999999999964211 0 11 24567888888889999999999999998431
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
......++. .+|++++|+|+++.. .... ..++..+.. .+.|+|+++||+|+
T Consensus 87 --------~~e~~~al~-~~D~~ilVvDa~~g~--~~qt-~~i~~~~~~--~~~p~iv~iNK~D~ 137 (691)
T PRK12739 87 --------TIEVERSLR-VLDGAVAVFDAVSGV--EPQS-ETVWRQADK--YGVPRIVFVNKMDR 137 (691)
T ss_pred --------HHHHHHHHH-HhCeEEEEEeCCCCC--CHHH-HHHHHHHHH--cCCCEEEEEECCCC
Confidence 112333433 359999999998743 3222 134444444 47899999999996
No 233
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.39 E-value=5.5e-12 Score=108.76 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=68.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccC--------------ccceeee------------------------eEEEEE
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPY--------------AFTTKSL------------------------FVGHTD 211 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~--------------~~tt~~~------------------------~~~~~~ 211 (293)
+|+++|..++|||||+++++...+..... .+.|... ....++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48899999999999999998654421100 0111100 002233
Q ss_pred ecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh-ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEec
Q 040152 212 YKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA-HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 212 ~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~-~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK 290 (293)
..+..+.++||||+.+ +....+..+. ..+|++++|+|++.... ... ..++..+.. .+.|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~~--------~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d-~~~l~~l~~--~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHER--------YLKTTLFGLTGYAPDYAMLVVAANAGII--GMT-KEHLGLALA--LNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcHH--------HHHHHHHhhcccCCCEEEEEEECCCCCc--HHH-HHHHHHHHH--cCCCEEEEEEC
Confidence 4456799999999721 1122333433 35799999999987543 221 244444444 47899999999
Q ss_pred cCC
Q 040152 291 TDL 293 (293)
Q Consensus 291 ~Dl 293 (293)
+|+
T Consensus 148 ~D~ 150 (224)
T cd04165 148 IDL 150 (224)
T ss_pred ccc
Confidence 995
No 234
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.38 E-value=2.6e-12 Score=101.89 Aligned_cols=100 Identities=26% Similarity=0.378 Sum_probs=67.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
.+|+++|++|+|||||+++|.+...... -|..+ .+.+ .+|||||-.- .+.....++......+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i-----~~~~---~~IDTPGEyi-----E~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAI-----EYYD---NTIDTPGEYI-----ENPRFYHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC----cccee-----Eecc---cEEECChhhe-----eCHHHHHHHHHHHhhC
Confidence 4899999999999999999999765321 12222 2222 4699999521 2233345555666678
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|+|++|.|++++.+.-... .. ..| ++|+|-|+||+|+
T Consensus 65 d~V~ll~dat~~~~~~pP~---fa----~~f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPG---FA----SMF-NKPVIGVITKIDL 101 (143)
T ss_pred CEEEEEecCCCCCccCCch---hh----ccc-CCCEEEEEECccC
Confidence 9999999999964322221 11 122 5899999999996
No 235
>PRK12736 elongation factor Tu; Reviewed
Probab=99.38 E-value=4.8e-12 Score=118.06 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc----------------ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV----------------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~----------------~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|..++|||||+++|++... ......++|.+.....+..++..+.+|||||+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH----
Confidence 356899999999999999999986311 011134667776655665667789999999972
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
..+ ...+..+ ..+|++++|+|+++....... +.+..+.. .+.| +|+|+||+|+
T Consensus 87 ---~f~-~~~~~~~-~~~d~~llVvd~~~g~~~~t~---~~~~~~~~--~g~~~~IvviNK~D~ 140 (394)
T PRK12736 87 ---DYV-KNMITGA-AQMDGAILVVAATDGPMPQTR---EHILLARQ--VGVPYLVVFLNKVDL 140 (394)
T ss_pred ---HHH-HHHHHHH-hhCCEEEEEEECCCCCchhHH---HHHHHHHH--cCCCEEEEEEEecCC
Confidence 111 2223333 346999999999874332222 23333333 3677 6789999996
No 236
>PRK00007 elongation factor G; Reviewed
Probab=99.38 E-value=5.9e-12 Score=125.27 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc---CCcc---cc------------cCccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR---ADVD---VQ------------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~---~~~~---~~------------~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
+.++|+++|.+|+|||||+++|+. ..-. +. ...++|.+.....+.|++..+.++||||+.+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 456999999999999999999963 2100 11 24567888888888999999999999998432
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
......++. .+|++++|+|++........ .++..+.. .+.|.++++||+|+
T Consensus 89 --------~~ev~~al~-~~D~~vlVvda~~g~~~qt~---~~~~~~~~--~~~p~iv~vNK~D~ 139 (693)
T PRK00007 89 --------TIEVERSLR-VLDGAVAVFDAVGGVEPQSE---TVWRQADK--YKVPRIAFVNKMDR 139 (693)
T ss_pred --------HHHHHHHHH-HcCEEEEEEECCCCcchhhH---HHHHHHHH--cCCCEEEEEECCCC
Confidence 112233333 35999999999874332222 34444444 47899999999995
No 237
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=8.8e-12 Score=101.31 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=83.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc--------ccc--CccceeeeeEEEEEecC-ceEEEEeCCCCCCCCCCchhHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD--------VQP--YAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDRNII 236 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~--------~~~--~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~~~~~~~~~~ 236 (293)
..+|+++|+.++||||++.+++..... .+. ...||.....+...+.+ ..+.++||||+ +|-.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq------~RF~- 82 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ------ERFK- 82 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc------HHHH-
Confidence 458999999999999999999876531 111 22478888888888876 78999999998 4322
Q ss_pred HHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 237 EMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 237 e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+..+...+++.++++|.+.+..+... .+++.+.... ..|+++++||.||
T Consensus 83 --fm~~~l~~ga~gaivlVDss~~~~~~a~---~ii~f~~~~~-~ip~vVa~NK~DL 133 (187)
T COG2229 83 --FMWEILSRGAVGAIVLVDSSRPITFHAE---EIIDFLTSRN-PIPVVVAINKQDL 133 (187)
T ss_pred --HHHHHHhCCcceEEEEEecCCCcchHHH---HHHHHHhhcc-CCCEEEEeecccc
Confidence 2235566678999999999998776222 4455544432 2899999999997
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.37 E-value=7.4e-12 Score=118.92 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=76.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc----------------ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV----------------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~----------------~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|.+++|||||+++|++... ......+.|.+.....+++++..+.+|||||+.+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 456899999999999999999985211 1122345677766666777788899999999821
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
.+ ...+..+ ..+|++++|+|+.+....... +++..+.. .++| +|+|+||+|+
T Consensus 157 ----f~-~~~~~g~-~~aD~ailVVda~~G~~~qt~---e~~~~~~~--~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 157 ----YV-KNMITGA-AQMDGAILVVSGADGPMPQTK---EHILLAKQ--VGVPNMVVFLNKQDQ 209 (478)
T ss_pred ----HH-HHHHHHH-hhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCeEEEEEecccc
Confidence 11 1223333 346999999999874332222 33333333 3677 7889999996
No 239
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.37 E-value=6.5e-13 Score=110.43 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=87.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-Cce--EEEEeCCCCCCCCCCchhHHHHHHHHH-
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-YLR--YQVIDTPGILDRPFEDRNIIEMCSITA- 243 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~~~--~~iiDTpG~~~~~~~~~~~~e~~~~~~- 243 (293)
..++++||..++|||+|+..++...+.. .|.+|--+-+...+..+ +.. +.+|||+|+.+... ++.
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~-~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr----------lRpl 72 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPE-EYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR----------LRPL 72 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcc-cccCeEEccceEEEEecCCCEEEEeeeecCCCccccc----------cccc
Confidence 4589999999999999999998887744 34444445555566664 554 68999999954311 111
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+..+|++|+||+++++.++..... +|+.+++...++.|+|+|++|.||
T Consensus 73 sY~~tdvfl~cfsv~~p~S~~nv~~-kW~pEi~~~cp~vpiiLVGtk~DL 121 (198)
T KOG0393|consen 73 SYPQTDVFLLCFSVVSPESFENVKS-KWIPEIKHHCPNVPIILVGTKADL 121 (198)
T ss_pred CCCCCCEEEEEEEcCChhhHHHHHh-hhhHHHHhhCCCCCEEEEeehHHh
Confidence 2344699999999999998876643 899999999899999999999997
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.37 E-value=6.9e-12 Score=120.56 Aligned_cols=113 Identities=20% Similarity=0.269 Sum_probs=74.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC--cc----c----------ccC------ccceeeeeEEEEEecCceEEEEeCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD--VD----V----------QPY------AFTTKSLFVGHTDYKYLRYQVIDTPG 224 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~--~~----~----------~~~------~~tt~~~~~~~~~~~~~~~~iiDTpG 224 (293)
..++|+++|.+|+|||||+++|+... .. + .++ .+.|.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 34589999999999999999996211 00 0 111 12344445566788888999999999
Q ss_pred CCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 225 ILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 225 ~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.+.. .....++ ..+|++++|+|+++.. .... ..++..... .+.|+++++||+|+
T Consensus 89 ~~df~--------~~~~~~l-~~aD~aIlVvDa~~gv--~~~t-~~l~~~~~~--~~iPiiv~iNK~D~ 143 (526)
T PRK00741 89 HEDFS--------EDTYRTL-TAVDSALMVIDAAKGV--EPQT-RKLMEVCRL--RDTPIFTFINKLDR 143 (526)
T ss_pred chhhH--------HHHHHHH-HHCCEEEEEEecCCCC--CHHH-HHHHHHHHh--cCCCEEEEEECCcc
Confidence 84321 1122233 3469999999998843 2221 134444433 47999999999995
No 241
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.1e-12 Score=106.66 Aligned_cols=114 Identities=23% Similarity=0.340 Sum_probs=85.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|-.||||||++.+|-..++-.. -.|.+..+..+.+++..+++||..|+... | .....+..
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~~f~vWDvGGq~k~----R-----~lW~~Y~~ 83 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNISFTVWDVGGQEKL----R-----PLWKHYFQ 83 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcceEEEEEecCCCccc----c-----cchhhhcc
Confidence 456899999999999999999977665332 34888999999999999999999998321 1 11234566
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..++++||+|.+++........ ++...+... ..+.|+++.+||.|+
T Consensus 84 ~t~~lIfVvDS~Dr~Ri~eak~-eL~~~l~~~~l~~~~llv~aNKqD~ 130 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRERIEEAKE-ELHRMLAEPELRNAPLLVFANKQDL 130 (181)
T ss_pred CCcEEEEEEeCCcHHHHHHHHH-HHHHHHcCcccCCceEEEEechhhc
Confidence 6799999999999766654432 344444332 257999999999995
No 242
>PRK09866 hypothetical protein; Provisional
Probab=99.36 E-value=1.9e-11 Score=117.00 Aligned_cols=71 Identities=24% Similarity=0.182 Sum_probs=44.2
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+.++||||+........+. ....+ ...+|+|+||+|++...+.... .+++.++......|+++|+||+|+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k---~M~eq-L~eADvVLFVVDat~~~s~~De---eIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQK---MLNQQ-LARASAVLAVLDYTQLKSISDE---EVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CEEEEECCCCCCccchHHHH---HHHHH-HhhCCEEEEEEeCCCCCChhHH---HHHHHHHhcCCCCCEEEEEEcccC
Confidence 57899999996432111111 11223 3346999999999875443332 345555553223599999999995
No 243
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.36 E-value=9.9e-12 Score=119.50 Aligned_cols=113 Identities=20% Similarity=0.248 Sum_probs=74.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC--Ccc----c----------cc------CccceeeeeEEEEEecCceEEEEeCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA--DVD----V----------QP------YAFTTKSLFVGHTDYKYLRYQVIDTPG 224 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~--~~~----~----------~~------~~~tt~~~~~~~~~~~~~~~~iiDTpG 224 (293)
+.++|+++|.+|+|||||+++|+.. ... + .+ ..+.|.......+++++..+++|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3568999999999999999998521 110 1 11 113344455566788888999999999
Q ss_pred CCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 225 ILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 225 ~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.+.. .....++ ..+|++++|+|+++. ..... ..+++.... .+.|+++|+||+|+
T Consensus 90 ~~df~--------~~~~~~l-~~aD~aIlVvDa~~g--v~~~t-~~l~~~~~~--~~~PiivviNKiD~ 144 (527)
T TIGR00503 90 HEDFS--------EDTYRTL-TAVDNCLMVIDAAKG--VETRT-RKLMEVTRL--RDTPIFTFMNKLDR 144 (527)
T ss_pred hhhHH--------HHHHHHH-HhCCEEEEEEECCCC--CCHHH-HHHHHHHHh--cCCCEEEEEECccc
Confidence 83221 1222333 346999999999874 33221 133443333 47899999999995
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.34 E-value=1.4e-11 Score=117.32 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccc---------------------------------cCccceeeeeEEEEEec
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQ---------------------------------PYAFTTKSLFVGHTDYK 213 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~---------------------------------~~~~tt~~~~~~~~~~~ 213 (293)
...+|+++|.+++|||||+++|+...-.+. ...+.|.+.....+.++
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 456999999999999999999974321110 01234566666667777
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+..+.+|||||+.+ +.......+ ..+|++++|+|++..........+.+...+ ...|+|+|+||+|+
T Consensus 106 ~~~i~~iDTPGh~~--------f~~~~~~~l-~~aD~allVVDa~~G~~~qt~~~~~l~~~l----g~~~iIvvvNKiD~ 172 (474)
T PRK05124 106 KRKFIIADTPGHEQ--------YTRNMATGA-STCDLAILLIDARKGVLDQTRRHSFIATLL----GIKHLVVAVNKMDL 172 (474)
T ss_pred CcEEEEEECCCcHH--------HHHHHHHHH-hhCCEEEEEEECCCCccccchHHHHHHHHh----CCCceEEEEEeecc
Confidence 88899999999621 111222333 557999999999875332222222333332 23578999999996
No 245
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.5e-13 Score=105.85 Aligned_cols=112 Identities=22% Similarity=0.321 Sum_probs=76.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---------C--ceEEEEeCCCCCCCCCCchhHHHH
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---------Y--LRYQVIDTPGILDRPFEDRNIIEM 238 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---------~--~~~~iiDTpG~~~~~~~~~~~~e~ 238 (293)
+.+.+|.+||||||++.+++...+...-......+.....+-++ + ..+++|||+|+ ++ +
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ------ER----F 80 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ------ER----F 80 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH------HH----H
Confidence 56778999999999999999887753322211222222222221 1 24799999998 43 2
Q ss_pred HHH-HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 239 CSI-TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 239 ~~~-~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.++ .++...|-++++++|.++..+|-... +|+.+++-. +.+.-+++++||+||
T Consensus 81 RSLTTAFfRDAMGFlLiFDlT~eqSFLnvr--nWlSQL~~hAYcE~PDivlcGNK~DL 136 (219)
T KOG0081|consen 81 RSLTTAFFRDAMGFLLIFDLTSEQSFLNVR--NWLSQLQTHAYCENPDIVLCGNKADL 136 (219)
T ss_pred HHHHHHHHHhhccceEEEeccchHHHHHHH--HHHHHHHHhhccCCCCEEEEcCccch
Confidence 333 45566567899999999977765544 788887654 456779999999997
No 246
>PRK13351 elongation factor G; Reviewed
Probab=99.34 E-value=1.2e-11 Score=123.36 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc------------ccc------CccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD------------VQP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~------------~~~------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
..++|+++|..|+|||||+++|+...-. ..+ ....|.......+.+++..+++|||||+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3569999999999999999999743210 001 1234555556677888889999999998432
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. ... ......+|++++|+|+++........ .+..+.. .+.|+++|+||+|+
T Consensus 87 ~--------~~~-~~~l~~aD~~ilVvd~~~~~~~~~~~---~~~~~~~--~~~p~iiviNK~D~ 137 (687)
T PRK13351 87 T--------GEV-ERSLRVLDGAVVVFDAVTGVQPQTET---VWRQADR--YGIPRLIFINKMDR 137 (687)
T ss_pred H--------HHH-HHHHHhCCEEEEEEeCCCCCCHHHHH---HHHHHHh--cCCCEEEEEECCCC
Confidence 1 112 22334469999999999865444333 3333433 47899999999996
No 247
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.34 E-value=8.8e-12 Score=102.29 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=66.2
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEE---------------------------------------
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTD--------------------------------------- 211 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~--------------------------------------- 211 (293)
|+++|..++|||||+|+|.|......+...+|..+..-...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999875433322232221111000
Q ss_pred -----------------ecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHH
Q 040152 212 -----------------YKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHS 274 (293)
Q Consensus 212 -----------------~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~ 274 (293)
.....+.|+||||+.+....... .....+ +.+|+++||+++++.... .+...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~----~~~~~~-~~~d~vi~V~~~~~~~~~--~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE----ITEEYL-PKADVVIFVVDANQDLTE--SDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH----HHHHHH-STTEEEEEEEETTSTGGG--HHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHH----HHHHhh-ccCCEEEEEeccCcccch--HHHHHHHHH
Confidence 00135889999999663222211 222233 667999999999984332 222234444
Q ss_pred HhhccCCCcEEEEEecc
Q 040152 275 IKSLFMNKPLIIVCNKT 291 (293)
Q Consensus 275 l~~~~~~~piivV~NK~ 291 (293)
... ....+++|.||+
T Consensus 154 ~~~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDP--DKSRTIFVLNKA 168 (168)
T ss_dssp HTT--TCSSEEEEEE-G
T ss_pred hcC--CCCeEEEEEcCC
Confidence 443 245599999995
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=99.34 E-value=1.1e-11 Score=115.64 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=75.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc----------------ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV----------------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~----------------~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|.+++|||||+++|++... ......++|.+.....+..++..+.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 346899999999999999999986311 011145677777666666667789999999972
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEE-EEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLI-IVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~pii-vV~NK~Dl 293 (293)
.+....... ...+|++++|+|++........ +++..+.. .+.|.+ +++||+|+
T Consensus 87 ----~f~~~~~~~-~~~aD~~llVVDa~~g~~~qt~---~~~~~~~~--~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 87 ----DYVKNMITG-AAQMDGAILVVSAADGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDM 140 (396)
T ss_pred ----HHHHHHHhh-hccCCEEEEEEECCCCCchHHH---HHHHHHHH--cCCCEEEEEEeecCC
Confidence 111222233 3457999999999874322222 33444443 367875 68999996
No 249
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.33 E-value=2e-11 Score=119.44 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=72.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc---ccccCccceeeeeEEEEEe-cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 170 TILICGYPNVGKSSFMNKITRADV---DVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~---~~~~~~~tt~~~~~~~~~~-~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
.|+++|.+++|||||+++|++.+. ......+.|.+.....+.. ++..+.+|||||+ ++ +....+ +..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh------e~--fi~~m~-~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH------EK--FLSNML-AGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH------HH--HHHHHH-HHh
Confidence 589999999999999999997542 2333456677665555544 3567899999997 21 111222 234
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
..+|++++|+|+++.......+ .+..+.. .+.| +++|+||+|+
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~e---hl~il~~--lgi~~iIVVlNKiDl 116 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTRE---HLAILQL--TGNPMLTVALTKADR 116 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHH---HHHHHHH--cCCCeEEEEEECCcc
Confidence 4579999999998743322222 2333332 2455 5799999996
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.33 E-value=1e-11 Score=122.48 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=74.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccc---------------------------------cCccceeeeeEEEEEec
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQ---------------------------------PYAFTTKSLFVGHTDYK 213 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~---------------------------------~~~~tt~~~~~~~~~~~ 213 (293)
...+|+++|.+|+|||||+++|+...-.+. ...+.|.+.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 345899999999999999999985432110 01244566666677778
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+..+.++||||+.+ +....... ...+|++++|+|++........+.+.++..+ ...|+++|+||+|+
T Consensus 103 ~~~~~liDtPG~~~--------f~~~~~~~-~~~aD~~llVvda~~g~~~~t~e~~~~~~~~----~~~~iivvvNK~D~ 169 (632)
T PRK05506 103 KRKFIVADTPGHEQ--------YTRNMVTG-ASTADLAIILVDARKGVLTQTRRHSFIASLL----GIRHVVLAVNKMDL 169 (632)
T ss_pred CceEEEEECCChHH--------HHHHHHHH-HHhCCEEEEEEECCCCccccCHHHHHHHHHh----CCCeEEEEEEeccc
Confidence 88899999999721 11112222 3456999999999875433222222333322 23678999999996
No 251
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.32 E-value=2e-11 Score=119.14 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc---------------ccCccceeeeeEEEEEec-----CceEEEEeCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV---------------QPYAFTTKSLFVGHTDYK-----YLRYQVIDTPGIL 226 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~---------------~~~~~tt~~~~~~~~~~~-----~~~~~iiDTpG~~ 226 (293)
..++++++|..++|||||+.+|+...-.+ ....+.|.......+.|. +..+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34689999999999999999997532110 011234444433444443 3568999999984
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.. ...... ...+|++++|+|+++........ .|.. ... .+.|+++|+||+|+
T Consensus 86 dF~--------~~v~~s-l~~aD~aILVVDas~gv~~qt~~--~~~~-~~~--~~lpiIvViNKiDl 138 (600)
T PRK05433 86 DFS--------YEVSRS-LAACEGALLVVDASQGVEAQTLA--NVYL-ALE--NDLEIIPVLNKIDL 138 (600)
T ss_pred HHH--------HHHHHH-HHHCCEEEEEEECCCCCCHHHHH--HHHH-HHH--CCCCEEEEEECCCC
Confidence 421 111122 33469999999999854433322 2222 222 47899999999996
No 252
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.32 E-value=1.5e-11 Score=114.74 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc----------------ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV----------------DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~----------------~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|..++|||||+++|++... ......++|.+.....++.++..+.+|||||+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 346899999999999999999974310 0112356777776666666667899999999832
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEE-EEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLI-IVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~pii-vV~NK~Dl 293 (293)
.+ ...+... ..+|++++|+|+++....... +.+..+.. .+.|.+ +|+||+|+
T Consensus 88 ----f~-~~~~~~~-~~~D~~ilVvda~~g~~~qt~---e~l~~~~~--~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 88 ----YV-KNMITGA-AQMDGAILVVSATDGPMPQTR---EHILLARQ--VGVPYIVVFLNKCDM 140 (394)
T ss_pred ----HH-HHHHHHH-hhCCEEEEEEECCCCCcHHHH---HHHHHHHH--cCCCEEEEEEEeccc
Confidence 11 1222332 346999999999874322222 33333333 356755 78999996
No 253
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.32 E-value=3.5e-12 Score=99.60 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=82.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
...+.++|-.++|||||+|..+...+.. +...|.+.....+.-++..+.+||.||+... + .....+...
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e--dmiptvGfnmrk~tkgnvtiklwD~gGq~rf----r-----smWerycR~ 88 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----R-----SMWERYCRG 88 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh--hhcccccceeEEeccCceEEEEEecCCCccH----H-----HHHHHHhhc
Confidence 3479999999999999999988766642 2344777888888878888999999998321 1 222345666
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHh--hccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIK--SLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~--~~~~~~piivV~NK~Dl 293 (293)
.++++||+|++++...+... .-+..+- +...++|+++.+||.|+
T Consensus 89 v~aivY~VDaad~~k~~~sr--~EL~~LL~k~~l~gip~LVLGnK~d~ 134 (186)
T KOG0075|consen 89 VSAIVYVVDAADPDKLEASR--SELHDLLDKPSLTGIPLLVLGNKIDL 134 (186)
T ss_pred CcEEEEEeecCCcccchhhH--HHHHHHhcchhhcCCcEEEecccccC
Confidence 79999999999987665443 2222221 12358999999999985
No 254
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.31 E-value=1.8e-11 Score=114.69 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=73.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCccc---------------------------------ccCccceeeeeEEEEEecCce
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDV---------------------------------QPYAFTTKSLFVGHTDYKYLR 216 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~---------------------------------~~~~~tt~~~~~~~~~~~~~~ 216 (293)
+|+++|..++|||||+++|+...-.+ ....+.|.+.....+.+++..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 69999999999999999996322110 011245677777777788889
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 217 YQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 217 ~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.++||||+.+ +-...... ...+|++++|+|++........+.+.++..+ ...++++|+||+|+
T Consensus 82 ~~liDtPGh~~--------f~~~~~~~-~~~aD~allVVda~~G~~~qt~~~~~~~~~~----~~~~iivviNK~D~ 145 (406)
T TIGR02034 82 FIVADTPGHEQ--------YTRNMATG-ASTADLAVLLVDARKGVLEQTRRHSYIASLL----GIRHVVLAVNKMDL 145 (406)
T ss_pred EEEEeCCCHHH--------HHHHHHHH-HhhCCEEEEEEECCCCCccccHHHHHHHHHc----CCCcEEEEEEeccc
Confidence 99999999721 11112223 3457999999999875433333333333332 23468999999995
No 255
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.30 E-value=5.2e-11 Score=114.37 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=78.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCc-ccccC-ccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc-hhHHHHHHHH-H
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADV-DVQPY-AFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED-RNIIEMCSIT-A 243 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~-~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~-~~~~e~~~~~-~ 243 (293)
..+|+++|.+||||||++|+|++... .+... +.||. ........++..+.+|||||+.+..... .+......+. .
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 45899999999999999999999864 34443 44444 4333445677889999999998764322 1111112222 2
Q ss_pred hh-ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC---CCcEEEEEeccCC
Q 040152 244 LA-HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM---NKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~-~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~---~~piivV~NK~Dl 293 (293)
+. ..+|+||||...+... ...++ ..+++.+...|. -..+|+|+|..|.
T Consensus 197 Lsk~gpDVVLlV~RLd~~~-~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQT-RDSND-LPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred HhcCCCCEEEEEEeCCCcc-ccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 22 2368999998776422 22222 255666665542 3568999998873
No 256
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.29 E-value=7.2e-13 Score=101.74 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=77.1
Q ss_pred eecCCCCCCHhHHHHHHhcCCcccccCcc-ceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH-HHhhcc
Q 040152 172 LICGYPNVGKSSFMNKITRADVDVQPYAF-TTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI-TALAHL 247 (293)
Q Consensus 172 ~vvG~~~~GKSSlin~l~~~~~~~~~~~~-tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~-~~l~~~ 247 (293)
+++|.+++|||+|+-++....+...+.-. ...+..-..++.++. ++++|||+|+ ++ +.++ .+++..
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq------er----frsvt~ayyrd 70 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ------ER----FRSVTHAYYRD 70 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccch------HH----HhhhhHhhhcc
Confidence 36899999999998777665554332211 112222223334443 5899999998 33 2333 567777
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+|++++++|+.+..+|+.-+ .|+.++.+.. ....+.+++||||+
T Consensus 71 a~allllydiankasfdn~~--~wlsei~ey~k~~v~l~llgnk~d~ 115 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQ--AWLSEIHEYAKEAVALMLLGNKCDL 115 (192)
T ss_pred cceeeeeeecccchhHHHHH--HHHHHHHHHHHhhHhHhhhcccccc
Confidence 89999999999999988765 7888888763 35778999999996
No 257
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.29 E-value=2.8e-11 Score=113.36 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=66.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc---cccCccceeeeeEEEE--------------------------EecCceEE
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHT--------------------------DYKYLRYQ 218 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~---~~~~~~tt~~~~~~~~--------------------------~~~~~~~~ 218 (293)
..+|+++|.+++|||||+++|++.... .....+.|........ ...+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 458999999999999999999864321 1111122222221110 01135689
Q ss_pred EEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC-CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 219 VIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC-GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 219 iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~-~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|||||+. .+... +......+|++++|+|+++.. .....+.+.++ .. ....|+++|+||+|+
T Consensus 84 liDtPGh~--------~f~~~-~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l---~~-~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 84 FVDAPGHE--------TLMAT-MLSGAALMDGALLVIAANEPCPQPQTKEHLMAL---EI-IGIKNIVIVQNKIDL 146 (406)
T ss_pred EEECCCHH--------HHHHH-HHHHHHHCCEEEEEEECCCCccccchHHHHHHH---HH-cCCCeEEEEEEcccc
Confidence 99999972 11112 222334569999999999754 22223322222 22 123579999999996
No 258
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=2.1e-12 Score=104.09 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=84.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec--CceEEEEeCCCCCCCCCCchhHHHHHHH-HH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDRNIIEMCSI-TA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~iiDTpG~~~~~~~~~~~~e~~~~-~~ 243 (293)
..++++++|.-+|||||++.+++..-+.-........+......... +.+.++|||+|+- +. .++ .+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqe-----Ef-----DaItkA 88 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQE-----EF-----DAITKA 88 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccch-----hH-----HHHHHH
Confidence 34689999999999999999999776643332222333333333333 3467899999982 22 333 57
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++++|.+.++||..++..+|+... +|.+.+......+|.++|-||+||
T Consensus 89 yyrgaqa~vLVFSTTDr~SFea~~--~w~~kv~~e~~~IPtV~vqNKIDl 136 (246)
T KOG4252|consen 89 YYRGAQASVLVFSTTDRYSFEATL--EWYNKVQKETERIPTVFVQNKIDL 136 (246)
T ss_pred HhccccceEEEEecccHHHHHHHH--HHHHHHHHHhccCCeEEeeccchh
Confidence 788889999999999987766544 788888877778999999999996
No 259
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.25 E-value=5.2e-11 Score=93.69 Aligned_cols=118 Identities=15% Similarity=0.260 Sum_probs=85.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC-CcccccCccceeeeeEEEEEecC---ceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA-DVDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~-~~~~~~~~~tt~~~~~~~~~~~~---~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
...+|+++|.-+||||+++..|.-. .....++..|-.+++...++-+. ..+.+.||.|+-+.+.+. -.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL--------pr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL--------PR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh--------hH
Confidence 4568999999999999999998644 44455566677788887777653 358999999985432221 13
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQA-ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+...+|++++|+++.++.+|+..+.+ .+++.-+. ....|+++.+||+|+
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr 130 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDR 130 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-cccccEEEEechhhc
Confidence 344557999999999999888766543 33333222 246899999999995
No 260
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.25 E-value=5.9e-11 Score=111.24 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc---cccCccceeeeeEEEEEe---------------------c-----CceE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDY---------------------K-----YLRY 217 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~---~~~~~~tt~~~~~~~~~~---------------------~-----~~~~ 217 (293)
...+|+++|..++|||||+.+|++.... .....+.|.........+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 4568999999999999999999764211 111233444433221111 0 2468
Q ss_pred EEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC-CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 218 QVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC-GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 218 ~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~-~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|||||+. .+....+... ..+|++++|+|++++. .......+.++ ... ...|+++|+||+|+
T Consensus 88 ~liDtPG~~--------~f~~~~~~~~-~~~D~~llVVDa~~~~~~~~t~~~l~~l---~~~-~i~~iiVVlNK~Dl 151 (411)
T PRK04000 88 SFVDAPGHE--------TLMATMLSGA-ALMDGAILVIAANEPCPQPQTKEHLMAL---DII-GIKNIVIVQNKIDL 151 (411)
T ss_pred EEEECCCHH--------HHHHHHHHHH-hhCCEEEEEEECCCCCCChhHHHHHHHH---HHc-CCCcEEEEEEeecc
Confidence 999999972 1111222222 3359999999999754 22223322322 221 23479999999996
No 261
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2e-11 Score=109.95 Aligned_cols=89 Identities=24% Similarity=0.342 Sum_probs=69.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC------------------ceEEEEeCCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY------------------LRYQVIDTPGILDRPF 230 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~------------------~~~~iiDTpG~~~~~~ 230 (293)
.++.++|.||||||||+|+++......++|||||.+++.|.....+ .++.++|.+|+.....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4799999999999999999999998899999999999999876532 2578999999987543
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
..+ .+-.+.+..+++ +|+|++|+|+++
T Consensus 83 ~Ge-GLGNkFL~~IRe-vdaI~hVVr~f~ 109 (372)
T COG0012 83 KGE-GLGNKFLDNIRE-VDAIIHVVRCFG 109 (372)
T ss_pred cCC-CcchHHHHhhhh-cCeEEEEEEecC
Confidence 321 111244455544 499999999984
No 262
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.23 E-value=3.3e-11 Score=113.04 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=81.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccccc---CccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQP---YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~---~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...+|+++|..|+||||||-+|.+..+..+- .+..+.. ..+.-...+..++||+.-.+ ++ ..+..
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~----~~-----~~l~~ 75 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSD----DR-----LCLRK 75 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccc----hh-----HHHHH
Confidence 4568999999999999999999998874221 1222222 22233445689999985321 22 22222
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc---CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF---MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~---~~~piivV~NK~Dl 293 (293)
-.+.+|+|++|++.+++.+++... ..|+..++..+ ...|+|+|+||+|+
T Consensus 76 EirkA~vi~lvyavd~~~T~D~is-t~WLPlir~~~~~~~~~PVILvGNK~d~ 127 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRIS-TKWLPLIRQLFGDYHETPVILVGNKSDN 127 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhh-hhhhhhhhcccCCCccCCEEEEeeccCC
Confidence 234469999999999988777664 37999999887 78999999999995
No 263
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.22 E-value=3.6e-11 Score=109.74 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=62.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-----cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-----VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-----~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
..+|+|+|.+|+|||||||+|.|-... ......||....... ..+...+.+||.||.+........+++...
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~-- 111 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPPEEYLKEVK-- 111 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT--
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCHHHHHHHcc--
Confidence 458999999999999999999763322 111222343333221 112235899999999765444444433221
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
+ ...|.++++.+- .+.. ....+.++++. .++|+++|-+|+|
T Consensus 112 -~-~~yD~fiii~s~----rf~~-ndv~La~~i~~--~gK~fyfVRTKvD 152 (376)
T PF05049_consen 112 -F-YRYDFFIIISSE----RFTE-NDVQLAKEIQR--MGKKFYFVRTKVD 152 (376)
T ss_dssp -G-GG-SEEEEEESS----S--H-HHHHHHHHHHH--TT-EEEEEE--HH
T ss_pred -c-cccCEEEEEeCC----CCch-hhHHHHHHHHH--cCCcEEEEEeccc
Confidence 1 123877776543 2333 33467788877 6899999999998
No 264
>PTZ00416 elongation factor 2; Provisional
Probab=99.22 E-value=1.1e-10 Score=118.14 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=73.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccc----------------cCccceeeeeEEEEEec----------CceEEEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQ----------------PYAFTTKSLFVGHTDYK----------YLRYQVI 220 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~----------------~~~~tt~~~~~~~~~~~----------~~~~~ii 220 (293)
..++|+++|..++|||||+++|+...-.+. ...++|.......+.|. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 456999999999999999999975322110 01123333333333443 4568999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 221 DTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
||||+.+.. .....++ ..+|++++|+|+++....... .+++.+.. .+.|+++|+||+|+
T Consensus 98 DtPG~~~f~--------~~~~~al-~~~D~ailVvda~~g~~~~t~---~~~~~~~~--~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 98 DSPGHVDFS--------SEVTAAL-RVTDGALVVVDCVEGVCVQTE---TVLRQALQ--ERIRPVLFINKVDR 156 (836)
T ss_pred cCCCHHhHH--------HHHHHHH-hcCCeEEEEEECCCCcCccHH---HHHHHHHH--cCCCEEEEEEChhh
Confidence 999985421 1222333 446999999999985444433 34444444 46899999999995
No 265
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.21 E-value=8.5e-11 Score=101.32 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=71.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
+|+++|..|+||||..+.+.+.-.. ...+.+.|.++...++... ...+++||+||+.+.-.. ....+ .......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~---~~~~~-~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN---YFNSQ-REEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT---THTCC-HHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc---ccccc-HHHHHhc
Confidence 5899999999999999888866432 4445556777776666544 458999999999654211 10001 1223344
Q ss_pred CcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQA-ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.++++||+|+.+..-......+ ..+..+....++..+-+.+.|+|+
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~ 123 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL 123 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc
Confidence 5899999999854311111211 344445555678899999999996
No 266
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=2.6e-11 Score=103.08 Aligned_cols=92 Identities=28% Similarity=0.494 Sum_probs=76.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.|.||||||+..+++...+.+.|.|||.....|.+.++|..+|+.|.||+++...+.+..- ..+.+.+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG--RQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG--RQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC--ceEEEEee
Confidence 4568999999999999999999999999999999999999999999999999999999988654432210 12234456
Q ss_pred cCcEEEEEEeCCCC
Q 040152 247 LRSAVLFFLDISGS 260 (293)
Q Consensus 247 ~~d~il~v~D~s~~ 260 (293)
.+|+|++|+|++..
T Consensus 139 taDlilMvLDatk~ 152 (364)
T KOG1486|consen 139 TADLILMVLDATKS 152 (364)
T ss_pred cccEEEEEecCCcc
Confidence 68999999999874
No 267
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.20 E-value=8.9e-11 Score=117.31 Aligned_cols=113 Identities=16% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC---------------cc-cccCccceeeeeEE----EEEecCceEEEEeCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD---------------VD-VQPYAFTTKSLFVG----HTDYKYLRYQVIDTPGIL 226 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~---------------~~-~~~~~~tt~~~~~~----~~~~~~~~~~iiDTpG~~ 226 (293)
..++|+++|..++|||||+++|+... +. .....+.|...... ..++++..+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 35699999999999999999996421 10 00012233332221 245566789999999996
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.. .....++ ..+|++++|+|+.+........ .++.+.. .+.|.++|+||+|.
T Consensus 98 ~f~--------~~~~~al-~~aD~~llVvda~~g~~~~t~~---~~~~~~~--~~~p~ivviNKiD~ 150 (720)
T TIGR00490 98 DFG--------GDVTRAM-RAVDGAIVVVCAVEGVMPQTET---VLRQALK--ENVKPVLFINKVDR 150 (720)
T ss_pred ccH--------HHHHHHH-HhcCEEEEEEecCCCCCccHHH---HHHHHHH--cCCCEEEEEEChhc
Confidence 532 1122333 3469999999998754333332 2333322 36788999999994
No 268
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.19 E-value=1.9e-10 Score=105.15 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=81.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC----Ccc------------cccCcc---ceeeeeE---EEEEec-----CceEEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA----DVD------------VQPYAF---TTKSLFV---GHTDYK-----YLRYQV 219 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~----~~~------------~~~~~~---tt~~~~~---~~~~~~-----~~~~~i 219 (293)
....|.++|+.|+|||||+|+|.+. +.. +++.++ +|.++.. ..++.. ..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4568999999999999999999987 332 455667 6666655 334432 147899
Q ss_pred EeCCCCCCCCCCc--hh-------------HH------HHHHHHHhhccCcEEEEEE-eCCC----CCCCCHHHHHHHHH
Q 040152 220 IDTPGILDRPFED--RN-------------II------EMCSITALAHLRSAVLFFL-DISG----SCGYSIAQQAALFH 273 (293)
Q Consensus 220 iDTpG~~~~~~~~--~~-------------~~------e~~~~~~l~~~~d~il~v~-D~s~----~~~~~~~~~~~~l~ 273 (293)
+||+|+.+...-. +. .+ +--+...+...+|..++|. |.|- +..+...+ .+++.
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE-e~~i~ 174 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE-ERVIE 174 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH-HHHHH
Confidence 9999997742110 00 00 1113445564568888887 8761 22344333 37888
Q ss_pred HHhhccCCCcEEEEEeccC
Q 040152 274 SIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 274 ~l~~~~~~~piivV~NK~D 292 (293)
+++. .++|+++|+||+|
T Consensus 175 eLk~--~~kPfiivlN~~d 191 (492)
T TIGR02836 175 ELKE--LNKPFIILLNSTH 191 (492)
T ss_pred HHHh--cCCCEEEEEECcC
Confidence 8887 5899999999998
No 269
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.19 E-value=2.4e-10 Score=108.16 Aligned_cols=112 Identities=17% Similarity=0.187 Sum_probs=73.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-------------------------------ccccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-------------------------------DVQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-------------------------------~~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|..++|||||+.+|+...- ......+.|.+.....+++++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 345899999999999999999864110 0111235677777777888888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC---C----CCHHHHHHHHHHHhhccCCCc-EEEE
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC---G----YSIAQQAALFHSIKSLFMNKP-LIIV 287 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~---~----~~~~~~~~~l~~l~~~~~~~p-iivV 287 (293)
.+.|+||||+.+ . ....+.. ...+|++++|+|++... + ....+.+.++ .. .+.| +|+|
T Consensus 86 ~i~lIDtPGh~~-------f-~~~~~~g-~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~---~~--~gi~~iiv~ 151 (446)
T PTZ00141 86 YFTIIDAPGHRD-------F-IKNMITG-TSQADVAILVVASTAGEFEAGISKDGQTREHALLA---FT--LGVKQMIVC 151 (446)
T ss_pred EEEEEECCChHH-------H-HHHHHHh-hhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH---HH--cCCCeEEEE
Confidence 999999999732 1 1122233 34579999999998743 1 1222222222 22 3555 6799
Q ss_pred EeccC
Q 040152 288 CNKTD 292 (293)
Q Consensus 288 ~NK~D 292 (293)
+||+|
T Consensus 152 vNKmD 156 (446)
T PTZ00141 152 INKMD 156 (446)
T ss_pred EEccc
Confidence 99999
No 270
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.6e-10 Score=89.74 Aligned_cols=113 Identities=21% Similarity=0.281 Sum_probs=82.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..+|+.+|-.++||||++..|.-..... . ..|.++.+..+.+.+..+++||..|+.. +. ...+.++..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~-~--ipTvGFnvetVtykN~kfNvwdvGGqd~--------iR-plWrhYy~g 84 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVT-T--IPTVGFNVETVTYKNVKFNVWDVGGQDK--------IR-PLWRHYYTG 84 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcc-c--ccccceeEEEEEeeeeEEeeeeccCchh--------hh-HHHHhhccC
Confidence 5689999999999999999998665432 1 2377788889999999999999999821 11 122445666
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..+++||+|+++....+.+. .++..-+.+. ..+.|+++.+||.|+
T Consensus 85 tqglIFV~Dsa~~dr~eeAr-~ELh~ii~~~em~~~~~LvlANkQDl 130 (180)
T KOG0071|consen 85 TQGLIFVVDSADRDRIEEAR-NELHRIINDREMRDAIILILANKQDL 130 (180)
T ss_pred CceEEEEEeccchhhHHHHH-HHHHHHhCCHhhhcceEEEEecCccc
Confidence 68999999999865444333 2444444332 247899999999996
No 271
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.19 E-value=2.4e-10 Score=98.65 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=66.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
.+..|+++|.+|+|||||+|.+.+.... .....++ . . .....+.++.++||||.. . ..+. .
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~--i~~~~~~~i~~vDtPg~~------~-----~~l~-~ 100 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--T--VVTGKKRRLTFIECPNDI------N-----AMID-I 100 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--E--EEecCCceEEEEeCCchH------H-----HHHH-H
Confidence 4568999999999999999999865221 1111111 1 1 122356779999999852 1 1122 2
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcE-EEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPL-IIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~pi-ivV~NK~Dl 293 (293)
...+|++++|+|++........ .++..+.. .+.|. ++|+||+|+
T Consensus 101 ak~aDvVllviDa~~~~~~~~~---~i~~~l~~--~g~p~vi~VvnK~D~ 145 (225)
T cd01882 101 AKVADLVLLLIDASFGFEMETF---EFLNILQV--HGFPRVMGVLTHLDL 145 (225)
T ss_pred HHhcCEEEEEEecCcCCCHHHH---HHHHHHHH--cCCCeEEEEEecccc
Confidence 3457999999999874332222 34444443 35675 559999995
No 272
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.18 E-value=2.2e-10 Score=116.18 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc----------cc------CccceeeeeEEEEEec----------------C
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV----------QP------YAFTTKSLFVGHTDYK----------------Y 214 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~----------~~------~~~tt~~~~~~~~~~~----------------~ 214 (293)
+.++|+++|..++|||||+.+|+...-.+ .+ ..+.|.......+.|. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 46699999999999999999997433110 01 1123333333333342 4
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..++++||||+.+.. .....++ ..+|++++|+|+.+........ +++.+.. .+.|+++++||+|.
T Consensus 98 ~~inliDtPGh~dF~--------~e~~~al-~~~D~ailVvda~~Gv~~~t~~---~~~~~~~--~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGVCVQTET---VLRQALG--ERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHHH--------HHHHHHH-hhcCEEEEEEECCCCCcccHHH---HHHHHHH--CCCCEEEEEECCcc
Confidence 568999999984321 1222333 4469999999999865444333 3444433 47899999999995
No 273
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.18 E-value=3e-10 Score=101.04 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=68.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCccccc--Cc------cceeeeeEEEEEe--cCc--eEEEEeCCCCCCCCCCc---
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQP--YA------FTTKSLFVGHTDY--KYL--RYQVIDTPGILDRPFED--- 232 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~--~~------~tt~~~~~~~~~~--~~~--~~~iiDTpG~~~~~~~~--- 232 (293)
.++|+|+|.+|+|||||+|.|++....... .+ ..|..+....... ++. .+.++||||+++.....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 468999999999999999999987654221 11 1122222222222 333 57899999998753221
Q ss_pred ---hhHHHHHHHHHhhc------------cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 ---RNIIEMCSITALAH------------LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 ---~~~~e~~~~~~l~~------------~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.++++.+.-..+.. ..|++||+++++.+ +....+ +..++.+.. ..++|-|+.|+|.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D-i~~mk~Ls~---~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD-IEFMKRLSK---RVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH-HHHHHHHTT---TSEEEEEESTGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH-HHHHHHhcc---cccEEeEEecccc
Confidence 12222211111110 12799999999864 344443 355666654 6889999999994
No 274
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=90.79 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=80.7
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
.+..+|++.|-.|+|||||+..|.+.++.. ...|.++....+++.+ ..+++||..|+-.- +. ....+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~I----Rp-----yWsNY 82 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNTKKVEYDGTFHLNVWDIGGQRGI----RP-----YWSNY 82 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh---ccccCCcceEEEeecCcEEEEEEecCCcccc----ch-----hhhhh
Confidence 467799999999999999999999987641 1236667777777776 68999999997331 11 12335
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHH--HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQ--AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~--~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...|.++||+|.++.-.++...+ .+++++.+- ...|+.+..||.|+
T Consensus 83 yenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdl 131 (185)
T KOG0074|consen 83 YENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDL 131 (185)
T ss_pred hhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHH
Confidence 555799999999888655543322 123333222 57899999999985
No 275
>PRK12740 elongation factor G; Reviewed
Probab=99.14 E-value=4.1e-10 Score=112.04 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=71.6
Q ss_pred cCCCCCCHhHHHHHHhcCCcc------------cc------cCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhH
Q 040152 174 CGYPNVGKSSFMNKITRADVD------------VQ------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNI 235 (293)
Q Consensus 174 vG~~~~GKSSlin~l~~~~~~------------~~------~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~ 235 (293)
+|.+|+|||||+++|....-. +. ...+.|.......+.+++..+++|||||+.+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 699999999999999532211 11 12355666777788889999999999998421
Q ss_pred HHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 236 IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 236 ~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.......+ ..+|++++|+|++........ .++..+.. .+.|+++|+||+|+
T Consensus 74 -~~~~~~~l-~~aD~vllvvd~~~~~~~~~~---~~~~~~~~--~~~p~iiv~NK~D~ 124 (668)
T PRK12740 74 -TGEVERAL-RVLDGAVVVVCAVGGVEPQTE---TVWRQAEK--YGVPRIIFVNKMDR 124 (668)
T ss_pred -HHHHHHHH-HHhCeEEEEEeCCCCcCHHHH---HHHHHHHH--cCCCEEEEEECCCC
Confidence 11122233 346999999999885432222 33444443 47899999999995
No 276
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3e-10 Score=94.44 Aligned_cols=113 Identities=19% Similarity=0.305 Sum_probs=75.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc--
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH-- 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~-- 246 (293)
..|+++|..++|||+|+-.|...... ...|+..++.+.+.+++..+.++|.||+ . .+.......+.+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~---~TvtSiepn~a~~r~gs~~~~LVD~PGH------~--rlR~kl~e~~~~~~ 107 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR---GTVTSIEPNEATYRLGSENVTLVDLPGH------S--RLRRKLLEYLKHNY 107 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc---CeeeeeccceeeEeecCcceEEEeCCCc------H--HHHHHHHHHccccc
Confidence 47999999999999999999877432 2245667778888888888999999998 2 222233333443
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHH-HHHhhc---cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALF-HSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l-~~l~~~---~~~~piivV~NK~Dl 293 (293)
.+-+|+||+|+..-.. +..+..+.+ .-+... ....|+++++||.|+
T Consensus 108 ~akaiVFVVDSa~f~k-~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl 157 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLK-NVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDL 157 (238)
T ss_pred cceeEEEEEeccccch-hhHHHHHHHHHHHHhhccccCCCCEEEEecchhh
Confidence 4679999999976221 111111222 222221 247899999999996
No 277
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.2e-10 Score=93.58 Aligned_cols=116 Identities=18% Similarity=0.278 Sum_probs=83.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC---cccc--cCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD---VDVQ--PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~---~~~~--~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~ 241 (293)
....|++.|..|+|||||+.++-... +... ..-.+|...+.+++..++.++.+||..|+-. .+ .-.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~----lr-----Slw 86 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES----LR-----SLW 86 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH----HH-----HHH
Confidence 34579999999999999998875322 2111 2235688889999999989999999999711 11 223
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhh--ccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKS--LFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~--~~~~~piivV~NK~Dl 293 (293)
..++..+++++|++|++++..++.... .++.+.. ...+.|+++.+||.|+
T Consensus 87 ~~yY~~~H~ii~viDa~~~eR~~~~~t--~~~~v~~~E~leg~p~L~lankqd~ 138 (197)
T KOG0076|consen 87 KKYYWLAHGIIYVIDATDRERFEESKT--AFEKVVENEKLEGAPVLVLANKQDL 138 (197)
T ss_pred HHHHHHhceeEEeecCCCHHHHHHHHH--HHHHHHHHHHhcCCchhhhcchhhh
Confidence 456677899999999999776655442 2333222 2358999999999985
No 278
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8.6e-10 Score=103.26 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=85.5
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---CceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
.++|-|.++|.-.-|||||+..+-+.++......+.|.++...++..+ ...+.|+||||+ +- +.+++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH------eA----Ft~mR 72 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH------EA----FTAMR 72 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH------HH----HHHHH
Confidence 357789999999999999999999999887788888998888888874 357999999998 11 12222
Q ss_pred H-hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 A-LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~-l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+ -+..+|++++|+|+.+..-.+.. +-+..++. .+.|+++++||+|.
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTi---EAI~hak~--a~vP~iVAiNKiDk 119 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTI---EAINHAKA--AGVPIVVAINKIDK 119 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHH---HHHHHHHH--CCCCEEEEEecccC
Confidence 1 23446999999999984333322 33444444 58999999999995
No 279
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.09 E-value=8.5e-11 Score=108.92 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhcCCCC----CCCCch-HH--HHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchh-----
Q 040152 57 NFFEKLSTIIDEFPRL----DDIHPF-YG--DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLY----- 124 (293)
Q Consensus 57 ~~~~~l~~~~~~~p~~----~~~~pf-y~--~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~----- 124 (293)
.++..||.+++....+ |-.+|- |+ +|.+.....+..|+.++-||+|+++.......|...+.......
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA 242 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSA 242 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEec
Confidence 4678999999888765 555554 44 68888888889999999999999999888888877774332100
Q ss_pred -h---------hhhhHHH------hhh-----hHHHHHHhhcccHHHHHHHHHH-----hhcC---CCCCCCCceEeecC
Q 040152 125 -R---------CKSLKVA------ALG-----RMCTVVKRIGPSLAYLEQIRQH-----MARL---PSIDPNTRTILICG 175 (293)
Q Consensus 125 -~---------~~~~~~~------~~~-----r~~~~~~~~~~~l~~l~~~~~~-----~~~~---~~~~~~~~~I~vvG 175 (293)
. .++.++. ..+ .....+.+....-..+..+.+. .... +... ...+|.+||
T Consensus 243 ~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~-~~vtVG~VG 321 (562)
T KOG1424|consen 243 LAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYK-DVVTVGFVG 321 (562)
T ss_pred ccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCC-ceeEEEeec
Confidence 0 0000000 000 0000111111000111112211 1111 1122 247899999
Q ss_pred CCCCCHhHHHHHHhcCC-cccccCccceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 176 YPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 176 ~~~~GKSSlin~l~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
+|||||||+||+|.|.+ +.++..|+-|+.+..-.++ ..+.++|+||+.-.+
T Consensus 322 YPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 322 YPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPS 373 (562)
T ss_pred CCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccC
Confidence 99999999999999876 4599999999988876554 348999999997644
No 280
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.08 E-value=2.3e-10 Score=94.62 Aligned_cols=56 Identities=36% Similarity=0.563 Sum_probs=46.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
...+++++|.||||||||+|+|++... .+++.|++|+....... +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 456899999999999999999999776 58889999987665443 246899999995
No 281
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.08 E-value=7.8e-10 Score=110.81 Aligned_cols=113 Identities=16% Similarity=0.070 Sum_probs=70.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc----------cc------CccceeeeeEEEEEe----cCceEEEEeCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV----------QP------YAFTTKSLFVGHTDY----KYLRYQVIDTPGIL 226 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~----------~~------~~~tt~~~~~~~~~~----~~~~~~iiDTpG~~ 226 (293)
+.++|+++|..++|||||+.+|+...-.+ .+ ..+.|.......+.| ++..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45689999999999999999997432111 01 112344333333333 34568999999996
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.. .....++ ..+|++++|+|+.......... ++..... .+.|.|+++||+|+
T Consensus 99 df~--------~~~~~~l-~~~D~avlVvda~~g~~~~t~~---~~~~~~~--~~~~~iv~iNK~D~ 151 (731)
T PRK07560 99 DFG--------GDVTRAM-RAVDGAIVVVDAVEGVMPQTET---VLRQALR--ERVKPVLFINKVDR 151 (731)
T ss_pred ChH--------HHHHHHH-HhcCEEEEEEECCCCCCccHHH---HHHHHHH--cCCCeEEEEECchh
Confidence 531 1222233 3459999999998754433333 2333222 35688999999994
No 282
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.07 E-value=1.1e-09 Score=100.07 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=68.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCc-----------------eEEEEeCCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRPF 230 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~-----------------~~~iiDTpG~~~~~~ 230 (293)
.++.++|.||+|||||+|+|++... .+++|||||..+..+.+.+.+. .+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 4799999999999999999999999 8999999999999999887662 479999999976432
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
.... +-...+..+ +.+|++++|+|..+
T Consensus 83 ~g~G-lgn~fL~~i-r~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEG-LGNQFLANI-REVDIIQHVVRCFE 109 (368)
T ss_pred cccC-cchHHHHHH-HhCCEEEEEEeCCC
Confidence 2211 111222333 33699999999864
No 283
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.5e-10 Score=89.66 Aligned_cols=112 Identities=15% Similarity=0.216 Sum_probs=80.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..++++.|-.|+|||||++.|-...... .. .|..++.....+++..++-+|..|+. ...+....+...
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~q-hv--PTlHPTSE~l~Ig~m~ftt~DLGGH~---------qArr~wkdyf~~ 87 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HV--PTLHPTSEELSIGGMTFTTFDLGGHL---------QARRVWKDYFPQ 87 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccc-cC--CCcCCChHHheecCceEEEEccccHH---------HHHHHHHHHHhh
Confidence 4589999999999999999998776532 22 26666677778888899999999972 122444556666
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+|+++|.+|+-+...+.... .-++.+-.. ....|+++.+||+|.
T Consensus 88 v~~iv~lvda~d~er~~es~--~eld~ll~~e~la~vp~lilgnKId~ 133 (193)
T KOG0077|consen 88 VDAIVYLVDAYDQERFAESK--KELDALLSDESLATVPFLILGNKIDI 133 (193)
T ss_pred hceeEeeeehhhHHHhHHHH--HHHHHHHhHHHHhcCcceeecccccC
Confidence 79999999999876665433 122222111 157999999999995
No 284
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.05 E-value=9e-10 Score=99.95 Aligned_cols=136 Identities=21% Similarity=0.298 Sum_probs=79.8
Q ss_pred HHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCc--hhhhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHh
Q 040152 81 DLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDS--LYRCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHM 158 (293)
Q Consensus 81 ~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~ 158 (293)
.+..+...... +.-+++++..-....+.|.+.+..... ........+.....+......+. ++..+++
T Consensus 54 ~l~~~v~~k~~----i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~------~~~i~~~ 123 (322)
T COG1161 54 ELERIVKEKPK----LLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLS------EEKIKRL 123 (322)
T ss_pred cHHHHHccCCc----EEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHHH------HHHHHHH
Confidence 34444444443 666778888777777778777654421 11110001111111111111110 0111222
Q ss_pred hcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 159 ARLPSIDPNTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 159 ~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
.+. .......+++++|.||||||||||+|.+... .+++.|++|++...-..+. .+.++||||+.....
T Consensus 124 ~~~-~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~~~ 192 (322)
T COG1161 124 KKK-GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPPKF 192 (322)
T ss_pred hhc-CCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCCCc
Confidence 211 1223456899999999999999999999876 4889999999877655443 389999999976543
No 285
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.9e-09 Score=100.65 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=84.5
Q ss_pred CCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe-cCceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 164 IDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 164 ~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
..+++|.|.++|...-|||||+.+|-+..+......+.|..+-...+.. .|..++|.||||+.- +.+++
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA----------F~aMR 218 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA----------FSAMR 218 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHH----------HHHHH
Confidence 4467889999999999999999999999988777778887766555554 467899999999821 12222
Q ss_pred H-hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 A-LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~-l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+ -+..+|.+++|+.+.+....+.. +.++..+. .+.|+|+.+||||.
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~---EaIkhAk~--A~VpiVvAinKiDk 265 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTL---EAIKHAKS--ANVPIVVAINKIDK 265 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHH---HHHHHHHh--cCCCEEEEEeccCC
Confidence 2 23346999999999885433322 33444444 68999999999994
No 286
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.04 E-value=2.1e-09 Score=101.69 Aligned_cols=116 Identities=19% Similarity=0.161 Sum_probs=72.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-------------------------------ccccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-------------------------------DVQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-------------------------------~~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|..++|||||+-+|+...- ......+.|.+.....+++++.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 446899999999999999988862110 0011235677777777777888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC---CCCHHHHH-HHHHHHhhccCCC-cEEEEEec
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC---GYSIAQQA-ALFHSIKSLFMNK-PLIIVCNK 290 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~---~~~~~~~~-~~l~~l~~~~~~~-piivV~NK 290 (293)
.+.++||||+.+ .+ ... ......+|++++|+|+++.. ++....|. +.+..+.. .+. ++|+|+||
T Consensus 86 ~i~liDtPGh~d-------f~-~~~-~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNK 154 (447)
T PLN00043 86 YCTVIDAPGHRD-------FI-KNM-ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNK 154 (447)
T ss_pred EEEEEECCCHHH-------HH-HHH-HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEc
Confidence 899999999721 11 122 22334579999999998731 11100111 22222222 255 57889999
Q ss_pred cCC
Q 040152 291 TDL 293 (293)
Q Consensus 291 ~Dl 293 (293)
+|+
T Consensus 155 mD~ 157 (447)
T PLN00043 155 MDA 157 (447)
T ss_pred ccC
Confidence 995
No 287
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.04 E-value=4.4e-10 Score=91.51 Aligned_cols=55 Identities=36% Similarity=0.503 Sum_probs=44.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
..+|+++|.||||||||+|+|.+... .+++.+++|+....-. . +..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT--L-MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE--c-CCCEEEEECcCC
Confidence 45789999999999999999998765 4788889888754322 2 245899999995
No 288
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2e-09 Score=105.89 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=80.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC---cc---cc------c------CccceeeeeEEEEEecC-ceEEEEeCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD---VD---VQ------P------YAFTTKSLFVGHTDYKY-LRYQVIDTPGILD 227 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~---~~---~~------~------~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~ 227 (293)
+.++|.++|+..+|||||..+|.-.. .. +. + ..+.|.......+.|.+ ..+++|||||+.|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 56799999999999999999985221 10 11 1 23567777777888986 8999999999998
Q ss_pred CCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+..+-. .+++. .|+.+.|+|+........+. ..++... .+.|.++++||+|.
T Consensus 89 Ft~EV~-----rslrv----lDgavvVvdaveGV~~QTEt---v~rqa~~--~~vp~i~fiNKmDR 140 (697)
T COG0480 89 FTIEVE-----RSLRV----LDGAVVVVDAVEGVEPQTET---VWRQADK--YGVPRILFVNKMDR 140 (697)
T ss_pred cHHHHH-----HHHHh----hcceEEEEECCCCeeecHHH---HHHHHhh--cCCCeEEEEECccc
Confidence 754321 22333 39999999999865444444 3334333 48999999999994
No 289
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.03 E-value=1.4e-09 Score=96.29 Aligned_cols=92 Identities=22% Similarity=0.319 Sum_probs=70.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-----------------ceEEEEeCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-----------------LRYQVIDTPGILDRP 229 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~iiDTpG~~~~~ 229 (293)
+..++.++|.||||||||+|+|+......+++||+|.++....+...+ ..+++.|++|+....
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 456899999999999999999999999999999999999998876542 247999999997643
Q ss_pred CCchhHHHHHHHHHhhccCcEEEEEEeCCCC
Q 040152 230 FEDRNIIEMCSITALAHLRSAVLFFLDISGS 260 (293)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~ 260 (293)
..... +-...+..+++ +|++++|+++...
T Consensus 99 s~G~G-LGN~FLs~iR~-vDaifhVVr~f~d 127 (391)
T KOG1491|consen 99 SAGEG-LGNKFLSHIRH-VDAIFHVVRAFED 127 (391)
T ss_pred ccCcC-chHHHHHhhhh-ccceeEEEEecCc
Confidence 32211 11122334444 4999999988763
No 290
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.00 E-value=3.3e-09 Score=94.94 Aligned_cols=61 Identities=28% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+++++|.||||||||+|+|.+.+. .+++.|++|+..... .. +..+.++||||+.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI--KL-GKGLELLDTPGILWPKL 181 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE--Ee-CCcEEEEECCCcCCCCC
Confidence 457899999999999999999999876 588899999887543 33 24689999999986543
No 291
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.00 E-value=2.4e-09 Score=92.40 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC--Ccccc-cCccceeeeeEEEEEec---CceEEEEeCCCCCCCCCCc-hhHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA--DVDVQ-PYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFED-RNIIEMC 239 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~--~~~~~-~~~~tt~~~~~~~~~~~---~~~~~iiDTpG~~~~~~~~-~~~~e~~ 239 (293)
+...|+|+|++++|||||+|.|.+. .+.+. ....+|+++........ +..+.++||||+.+....+ .......
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4557999999999999999999998 67643 45778998887776663 5689999999998765433 3333333
Q ss_pred HHHHhhccCcEEEEEEeCCCC
Q 040152 240 SITALAHLRSAVLFFLDISGS 260 (293)
Q Consensus 240 ~~~~l~~~~d~il~v~D~s~~ 260 (293)
++..+ .+|+++|..+....
T Consensus 86 ~l~~l--lss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATL--LSSVLIYNSWETIL 104 (224)
T ss_pred HHHHH--HhCEEEEeccCccc
Confidence 33333 35899999888653
No 292
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.99 E-value=6.3e-08 Score=87.65 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchh
Q 040152 45 QFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLY 124 (293)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
+.+..+++.+.+.+.+.+.++.. ...+++ +|+.++.+.|...|. ..+.|+.+++.+.+.... .. ..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~--~~~~~l~~~L~~~dv------~~~~a~~i~~~~~~~~~~----~~-~~ 83 (318)
T PRK10416 18 ERLKKGLSKTRENFGEGINGLFA-KKKIDE--DLLEELEELLIEADV------GVETTEEIIEELRERVKR----KN-LK 83 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHhc----cC-CC
Confidence 34556677777888999999875 455665 477777777766663 445566666666543211 11 11
Q ss_pred hhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcC------CcccccC
Q 040152 125 RCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRA------DVDVQPY 198 (293)
Q Consensus 125 ~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~------~~~~~~~ 198 (293)
....++......+...+..... .+.........++++|++|+||||++..|.+. .+...+.
T Consensus 84 ~~~~~~~~l~~~l~~~l~~~~~-------------~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 84 DPEELKELLKEELAEILEPVEK-------------PLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CHHHHHHHHHHHHHHHhCcCCc-------------cccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 1111222221222211110000 00001123568999999999999999888632 2211110
Q ss_pred -ccc------------eeeee-EEE----------------EEecCceEEEEeCCCCCCCCCCchhHHHHHH-H--HHhh
Q 040152 199 -AFT------------TKSLF-VGH----------------TDYKYLRYQVIDTPGILDRPFEDRNIIEMCS-I--TALA 245 (293)
Q Consensus 199 -~~t------------t~~~~-~~~----------------~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~-~--~~l~ 245 (293)
.+. ..+.. ... ....+.++.++||||..........++.... + ..+.
T Consensus 151 D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~ 230 (318)
T PRK10416 151 DTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADP 230 (318)
T ss_pred CccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcC
Confidence 000 00000 000 0012457899999998654332222222110 0 0112
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
..++.+++|+|++. +.+...+...+. + .-.+.-+|+||.|
T Consensus 231 ~~p~~~~LVl~a~~--g~~~~~~a~~f~---~--~~~~~giIlTKlD 270 (318)
T PRK10416 231 DAPHEVLLVLDATT--GQNALSQAKAFH---E--AVGLTGIILTKLD 270 (318)
T ss_pred CCCceEEEEEECCC--ChHHHHHHHHHH---h--hCCCCEEEEECCC
Confidence 33578999999985 333333322221 1 1235578899998
No 293
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.99 E-value=1e-09 Score=94.67 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=42.3
Q ss_pred ceEEEEeCCCCCCCC-CCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCH-HHHHHHHHHHhhc-cCCCcEEEEEecc
Q 040152 215 LRYQVIDTPGILDRP-FEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSI-AQQAALFHSIKSL-FMNKPLIIVCNKT 291 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~-~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~-~~~~~~l~~l~~~-~~~~piivV~NK~ 291 (293)
.++.++||||+++.- ......+--.++.... +-+++||+|.....+... .. +.+-...-+ ....|.|+|.||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~--ptvv~YvvDt~rs~~p~tFMS--NMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSF--PTVVVYVVDTPRSTSPTTFMS--NMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcC--CeEEEEEecCCcCCCchhHHH--HHHHHHHHHHhccCCeEEEEecc
Confidence 458999999998732 1122222222333222 468999999876433221 11 111111111 1579999999999
Q ss_pred CC
Q 040152 292 DL 293 (293)
Q Consensus 292 Dl 293 (293)
|+
T Consensus 192 Dv 193 (366)
T KOG1532|consen 192 DV 193 (366)
T ss_pred cc
Confidence 96
No 294
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.97 E-value=4.1e-09 Score=93.80 Aligned_cols=61 Identities=33% Similarity=0.420 Sum_probs=48.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+++++|.||||||||+|+|.+... .+++.|++|+..... ..+ ..+.++||||+.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~~-~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWI--KLS-DGLELLDTPGILWPKF 178 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEE--EeC-CCEEEEECCCcccCCC
Confidence 457899999999999999999998774 478889999886543 332 3689999999976543
No 295
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.2e-09 Score=89.08 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=79.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeee--EEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLF--VGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~--~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...++++++|..|.||||++++.....++-...+.+..... ......+..++..|||+|+.... .++.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~g----------glrd 77 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKG----------GLRD 77 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeec----------cccc
Confidence 34679999999999999999999988886444332222222 22222233678999999983211 1111
Q ss_pred hhc-cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAH-LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~-~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
-++ .+.+.++++|++....+.... +|.+.+...+.++|+++++||.|.
T Consensus 78 gyyI~~qcAiimFdVtsr~t~~n~~--rwhrd~~rv~~NiPiv~cGNKvDi 126 (216)
T KOG0096|consen 78 GYYIQGQCAIIMFDVTSRFTYKNVP--RWHRDLVRVRENIPIVLCGNKVDI 126 (216)
T ss_pred ccEEecceeEEEeeeeehhhhhcch--HHHHHHHHHhcCCCeeeeccceec
Confidence 122 236889999999876665555 677777776678999999999984
No 296
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=2.8e-09 Score=99.64 Aligned_cols=113 Identities=26% Similarity=0.258 Sum_probs=78.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc---------------ccccCccceeeeeEEEEEecC---ceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV---------------DVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~---------------~~~~~~~tt~~~~~~~~~~~~---~~~~iiDTpG~~~~ 228 (293)
+.+++.|+-.-.-|||||..+|....- .+....+.|.-.....+.|.+ .-+++|||||+.|+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 456899999999999999999863221 122344667776666777766 56899999999998
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+-. ..+.+ +|++|+|+|+++. ...+....++..+. .+..+|.|+||+|+
T Consensus 139 s~EVs-----Rslaa----c~G~lLvVDA~qG--vqAQT~anf~lAfe---~~L~iIpVlNKIDl 189 (650)
T KOG0462|consen 139 SGEVS-----RSLAA----CDGALLVVDASQG--VQAQTVANFYLAFE---AGLAIIPVLNKIDL 189 (650)
T ss_pred cceeh-----ehhhh----cCceEEEEEcCcC--chHHHHHHHHHHHH---cCCeEEEeeeccCC
Confidence 65432 22222 5899999999983 33322223333333 47889999999996
No 297
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.4e-08 Score=86.16 Aligned_cols=122 Identities=22% Similarity=0.331 Sum_probs=73.2
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcc--------cccCccceeeeeEEE-EEecCc--eEEEEeCCCCCCCCCCc--
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVD--------VQPYAFTTKSLFVGH-TDYKYL--RYQVIDTPGILDRPFED-- 232 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~--------~~~~~~tt~~~~~~~-~~~~~~--~~~iiDTpG~~~~~~~~-- 232 (293)
+-.++|+++|.+|.|||||+|.|+...+. ..+++.||.--...+ +.-++. ++.++||||++|.--.+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 35789999999999999999999865442 123444443333333 233444 47899999999853211
Q ss_pred ----hhHHHHH---HH------HHhhccC----cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 233 ----RNIIEMC---SI------TALAHLR----SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 233 ----~~~~e~~---~~------~~l~~~~----d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
..++..+ .+ ..-.+.+ +++||.+-++..+- ...+ ++.++.+.+ -..++-|+-|+|
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsL-rplD-ieflkrLt~---vvNvvPVIakaD 195 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSL-RPLD-IEFLKRLTE---VVNVVPVIAKAD 195 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCcc-Cccc-HHHHHHHhh---hheeeeeEeecc
Confidence 1111111 11 1112222 58999999988643 3232 245555554 456788888988
No 298
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=9.5e-10 Score=92.35 Aligned_cols=55 Identities=31% Similarity=0.444 Sum_probs=44.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC---------cccccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD---------VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~---------~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
..+++++|.+|||||||+|+|.+.. ..++..|+||++.....+.. .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 3579999999999999999998743 34677889999877655532 5799999996
No 299
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.95 E-value=9.2e-09 Score=89.01 Aligned_cols=119 Identities=21% Similarity=0.185 Sum_probs=77.5
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcc---cccCccceeeeeEEEEEecCceEEEEeCCCC-----CCCCCCchhHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI-----LDRPFEDRNIIE 237 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~---~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~-----~~~~~~~~~~~e 237 (293)
...+.+++.|.+|||||||+|.+...... ....++.|+.+...++ +..+.++|.||. ....+.+-+.+-
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhH
Confidence 45678999999999999999999876543 2335555655544332 357999999994 334444444443
Q ss_pred HHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 238 MCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 238 ~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+..-... =.+.+.+|++-+..-.....+.|+.+ .+.|+.+|+||||.
T Consensus 211 ~~Y~leR~nL-v~~FLLvd~sv~i~~~D~~~i~~~ge-----~~VP~t~vfTK~DK 260 (320)
T KOG2486|consen 211 KSYLLERENL-VRVFLLVDASVPIQPTDNPEIAWLGE-----NNVPMTSVFTKCDK 260 (320)
T ss_pred HHHHHhhhhh-heeeeeeeccCCCCCCChHHHHHHhh-----cCCCeEEeeehhhh
Confidence 3333222222 24677789887654444444455554 58999999999993
No 300
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.9e-09 Score=96.05 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=75.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC----------------------c---------ccccCccceeeeeEEEEEecCce
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD----------------------V---------DVQPYAFTTKSLFVGHTDYKYLR 216 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~----------------------~---------~~~~~~~tt~~~~~~~~~~~~~~ 216 (293)
..+++++|...+|||||+-+|+-.- + ......+.|.+.....++.+-..
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 4589999999999999999985220 0 11223466777777777777778
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC---CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 217 YQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC---GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 217 ~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~---~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.|+|+||+-|+ . ..+...+..||+.++|+|++... ++....|.+....+.....-..+|+++||+|+
T Consensus 87 ~tIiDaPGHrdF-------v--knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~ 157 (428)
T COG5256 87 FTIIDAPGHRDF-------V--KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL 157 (428)
T ss_pred EEEeeCCchHHH-------H--HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc
Confidence 999999997322 1 11223445579999999998862 33222232222222222234568999999995
No 301
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=8.8e-09 Score=94.11 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=77.8
Q ss_pred ceEeecCCCCCCHhHHHHHHh--cCC--------------ccccc------CccceeeeeEEEEEecCceEEEEeCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKIT--RAD--------------VDVQP------YAFTTKSLFVGHTDYKYLRYQVIDTPGIL 226 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~--~~~--------------~~~~~------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~ 226 (293)
++.+|+-.|.+|||||..+|+ |.. ...++ ..+.+....+-.++|.+..+++.||||+-
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 479999999999999999874 211 11121 23556666777888889999999999997
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
|.+... +.++.+ +|..|.|+|+.. +.+.. .+++++-.+- .+.|++-++||+|
T Consensus 93 DFSEDT-----YRtLtA----vDsAvMVIDaAK--GiE~q-T~KLfeVcrl--R~iPI~TFiNKlD 144 (528)
T COG4108 93 DFSEDT-----YRTLTA----VDSAVMVIDAAK--GIEPQ-TLKLFEVCRL--RDIPIFTFINKLD 144 (528)
T ss_pred ccchhH-----HHHHHh----hheeeEEEeccc--CccHH-HHHHHHHHhh--cCCceEEEeeccc
Confidence 664221 233333 399999999987 33332 3466655544 6899999999998
No 302
>PRK13768 GTPase; Provisional
Probab=98.92 E-value=3.8e-09 Score=92.81 Aligned_cols=77 Identities=26% Similarity=0.215 Sum_probs=42.9
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc-cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAH-LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~-~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+.+|||||+.+.... ..........+.. .++++++|+|++............++........+.|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~--~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF--RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhh--hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 36899999998542211 1111111222221 16899999999774332222212233322222247999999999995
No 303
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.8e-09 Score=84.25 Aligned_cols=114 Identities=26% Similarity=0.348 Sum_probs=81.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|--|+||||++-++--.++ +...| |.+..+..+.+++.++++||..|+..- + ...+.++.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkP--tigfnve~v~yKNLk~~vwdLggqtSi----r-----PyWRcYy~ 84 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKP--TIGFNVETVPYKNLKFQVWDLGGQTSI----R-----PYWRCYYA 84 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCC--CCCcCccccccccccceeeEccCcccc----c-----HHHHHHhc
Confidence 356899999999999998877654443 22222 556667778888999999999998542 1 12234556
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..|+++||+|.++.+..+.... .++..+.+- ..+..+++++||.|.
T Consensus 85 dt~avIyVVDssd~dris~a~~-el~~mL~E~eLq~a~llv~anKqD~ 131 (182)
T KOG0072|consen 85 DTDAVIYVVDSSDRDRISIAGV-ELYSMLQEEELQHAKLLVFANKQDY 131 (182)
T ss_pred ccceEEEEEeccchhhhhhhHH-HHHHHhccHhhcCceEEEEeccccc
Confidence 6799999999999887766553 344444432 245778999999994
No 304
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.91 E-value=2.7e-09 Score=86.63 Aligned_cols=56 Identities=38% Similarity=0.457 Sum_probs=46.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
...+++++|.||+|||||+|+|.+... .+++.+++|......... ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 457899999999999999999998764 477788999887765432 46899999995
No 305
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.89 E-value=3.4e-09 Score=84.72 Aligned_cols=54 Identities=33% Similarity=0.456 Sum_probs=43.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL 226 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~ 226 (293)
+++++|.+|+|||||+|++.+... .++..+++|+.... +..++ .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 799999999999999999998876 36667777776554 33332 68999999984
No 306
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.87 E-value=1.7e-08 Score=95.56 Aligned_cols=114 Identities=22% Similarity=0.240 Sum_probs=65.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc---cccCccceeeeeEEEE---------------Eec---------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHT---------------DYK--------------- 213 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~---~~~~~~tt~~~~~~~~---------------~~~--------------- 213 (293)
...+|.++|....|||||+.+|++.... .+-..+.|.+.-.... .++
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 3458999999999999999999975431 1111122221111100 000
Q ss_pred ---CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC-CCCHHHHHHHHHHHhhccCCCcEEEEEe
Q 040152 214 ---YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC-GYSIAQQAALFHSIKSLFMNKPLIIVCN 289 (293)
Q Consensus 214 ---~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~-~~~~~~~~~~l~~l~~~~~~~piivV~N 289 (293)
...+.++||||+. .+-...+..+ ..+|++++|+|+++.. .....+.+.++..+ .-.|+|+|+|
T Consensus 113 ~~~~~~i~~IDtPGH~--------~fi~~m~~g~-~~~D~alLVVda~~g~~~~qT~ehl~i~~~l----gi~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD--------ILMATMLNGA-AVMDAALLLIAANESCPQPQTSEHLAAVEIM----KLKHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHH--------HHHHHHHHHH-hhCCEEEEEEECCCCccchhhHHHHHHHHHc----CCCcEEEEEe
Confidence 1368999999971 2222223333 3469999999999742 22222222222221 2357899999
Q ss_pred ccCC
Q 040152 290 KTDL 293 (293)
Q Consensus 290 K~Dl 293 (293)
|+|+
T Consensus 180 KiDl 183 (460)
T PTZ00327 180 KIDL 183 (460)
T ss_pred cccc
Confidence 9996
No 307
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.87 E-value=4.4e-08 Score=88.10 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=74.2
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccc----cCcc----ceeeeeEEE--EEecCc--eEEEEeCCCCCCCCCCc-
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQ----PYAF----TTKSLFVGH--TDYKYL--RYQVIDTPGILDRPFED- 232 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~----~~~~----tt~~~~~~~--~~~~~~--~~~iiDTpG~~~~~~~~- 232 (293)
+-.++|+++|.+|.|||||+|.|++...... +... .|..+.... +.-++. .++++||||++|.-...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3567999999999999999999998743211 1111 222222222 222333 57899999999853221
Q ss_pred -----hhHHHHHHHHHh------hc-------cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 -----RNIIEMCSITAL------AH-------LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 -----~~~~e~~~~~~l------~~-------~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.++++.+.-..+ .. ..+++||.+-++.. +....+ +..++.+.. ...+|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D-Ie~Mk~ls~---~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD-IEAMKRLSK---RVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH-HHHHHHHhc---ccCeeeeeecccc
Confidence 122222111111 11 12699999999875 444443 355666654 5778999999994
No 308
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.87 E-value=5.4e-09 Score=86.33 Aligned_cols=56 Identities=30% Similarity=0.424 Sum_probs=45.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
..++++++|.+|+|||||+|++.+... .+++.+++|......... ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 456899999999999999999998876 467778888876654432 56899999997
No 309
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.9e-08 Score=88.99 Aligned_cols=123 Identities=23% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccc-------cCccceeeeeEEEEEe--cCc--eEEEEeCCCCCCCCCCc--
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQ-------PYAFTTKSLFVGHTDY--KYL--RYQVIDTPGILDRPFED-- 232 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~-------~~~~tt~~~~~~~~~~--~~~--~~~iiDTpG~~~~~~~~-- 232 (293)
+-.++++++|.+|.|||||+|.|+....... ..+..|..+....... +|. .++++||||++|.-...
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3467999999999999999999987744311 1122233333333333 333 57899999999842111
Q ss_pred ----hhHHHHHHHHHh------hc------cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 ----RNIIEMCSITAL------AH------LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 ----~~~~e~~~~~~l------~~------~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.++++.+.-..+ .. ..+++||.+.++.. +....+ +..++.+. ....+|-|+-|+|.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D-i~~Mk~l~---~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD-IEFMKKLS---KKVNLIPVIAKADT 170 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh-HHHHHHHh---ccccccceeecccc
Confidence 122222111111 11 12799999999875 344443 24455554 46788899999984
No 310
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.86 E-value=1.4e-08 Score=93.35 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=76.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc------c----------ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD------V----------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~------~----------~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
..++|+++-...-|||||+..|+...-. + ....+.|.-..-..+.|++.+++|+||||+.|+.-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3468999999999999999999754321 1 11235565555566788999999999999998864
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+- |+ .+ .-.|++|+++|+++..-.+. . -.++..-. .+.+-|+|+||+|-
T Consensus 84 EV----ER-vl----~MVDgvlLlVDA~EGpMPQT--r-FVlkKAl~--~gL~PIVVvNKiDr 132 (603)
T COG1217 84 EV----ER-VL----SMVDGVLLLVDASEGPMPQT--R-FVLKKALA--LGLKPIVVINKIDR 132 (603)
T ss_pred hh----hh-hh----hhcceEEEEEEcccCCCCch--h-hhHHHHHH--cCCCcEEEEeCCCC
Confidence 32 21 11 12499999999998432221 1 12222222 46777999999993
No 311
>PTZ00099 rab6; Provisional
Probab=98.86 E-value=1.6e-08 Score=84.06 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=51.4
Q ss_pred EEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcE
Q 040152 208 GHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPL 284 (293)
Q Consensus 208 ~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~pi 284 (293)
..+.+++ ..+.||||||..... .....+.+.+|++|+|+|++++.++.... .|+..+... ..+.|+
T Consensus 20 ~~~~~~~~~v~l~iwDt~G~e~~~---------~~~~~~~~~ad~~ilv~D~t~~~sf~~~~--~w~~~i~~~~~~~~pi 88 (176)
T PTZ00099 20 KTLYLDEGPVRLQLWDTAGQERFR---------SLIPSYIRDSAAAIVVYDITNRQSFENTT--KWIQDILNERGKDVII 88 (176)
T ss_pred EEEEECCEEEEEEEEECCChHHhh---------hccHHHhCCCcEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCeE
Confidence 3344444 467999999972211 11233456689999999999987776554 566665443 246899
Q ss_pred EEEEeccCC
Q 040152 285 IIVCNKTDL 293 (293)
Q Consensus 285 ivV~NK~Dl 293 (293)
++|+||+||
T Consensus 89 ilVgNK~DL 97 (176)
T PTZ00099 89 ALVGNKTDL 97 (176)
T ss_pred EEEEECccc
Confidence 999999996
No 312
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.83 E-value=3.2e-07 Score=85.73 Aligned_cols=114 Identities=23% Similarity=0.309 Sum_probs=62.7
Q ss_pred CceEeecCCCCCCHhHHHHHHh------cCCcc-cccCcc-----------cee-ee-eEEEE---E-------------
Q 040152 168 TRTILICGYPNVGKSSFMNKIT------RADVD-VQPYAF-----------TTK-SL-FVGHT---D------------- 211 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~------~~~~~-~~~~~~-----------tt~-~~-~~~~~---~------------- 211 (293)
+..|+++|.+||||||++..|. |.++. ++.-++ ... +. ..... +
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999986 33332 111110 010 00 01100 0
Q ss_pred ecCceEEEEeCCCCCCCCCCchhHHHH-HHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEec
Q 040152 212 YKYLRYQVIDTPGILDRPFEDRNIIEM-CSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 212 ~~~~~~~iiDTpG~~~~~~~~~~~~e~-~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK 290 (293)
-.+.++.|+||||..... .+.++. ..+.. ...+|.+++|+|++. +.....+.+.|.+ .-.+--+|+||
T Consensus 180 ~~~~DvViIDTaGr~~~d---~~lm~El~~i~~-~~~p~e~lLVlda~~--Gq~a~~~a~~F~~-----~~~~~g~IlTK 248 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQE---DSLFEEMLQVAE-AIQPDNIIFVMDGSI--GQAAEAQAKAFKD-----SVDVGSVIITK 248 (429)
T ss_pred hCCCCEEEEECCCCCcch---HHHHHHHHHHhh-hcCCcEEEEEecccc--ChhHHHHHHHHHh-----ccCCcEEEEEC
Confidence 024578999999975432 112211 11111 123588999999875 3333433333332 12467889999
Q ss_pred cC
Q 040152 291 TD 292 (293)
Q Consensus 291 ~D 292 (293)
.|
T Consensus 249 lD 250 (429)
T TIGR01425 249 LD 250 (429)
T ss_pred cc
Confidence 98
No 313
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.9e-08 Score=88.99 Aligned_cols=123 Identities=22% Similarity=0.300 Sum_probs=75.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc---cccCccceeeeeEEEEE-----------------ec-------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTD-----------------YK------------- 213 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~---~~~~~~tt~~~~~~~~~-----------------~~------------- 213 (293)
..+-|+++|.-..||||+++.|+..++. +.+.|.|-.-..+-+.+ +.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4567999999999999999999988775 33333222111111100 00
Q ss_pred ---------CceEEEEeCCCCCCCCCC--chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCC
Q 040152 214 ---------YLRYQVIDTPGILDRPFE--DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNK 282 (293)
Q Consensus 214 ---------~~~~~iiDTpG~~~~~~~--~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~ 282 (293)
-..+.|+||||+++...+ .+.+-....+..++..+|.|+++||+-.-.- +.+ .-+.+..++. ..-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI-sdE-f~~vi~aLkG--~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SDE-FKRVIDALKG--HED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc-cHH-HHHHHHHhhC--Ccc
Confidence 035899999999874322 1111112233455666899999999865321 211 1256677766 355
Q ss_pred cEEEEEeccCC
Q 040152 283 PLIIVCNKTDL 293 (293)
Q Consensus 283 piivV~NK~Dl 293 (293)
.+=+|+||+|.
T Consensus 213 kiRVVLNKADq 223 (532)
T KOG1954|consen 213 KIRVVLNKADQ 223 (532)
T ss_pred eeEEEeccccc
Confidence 67899999994
No 314
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.79 E-value=3.7e-09 Score=95.33 Aligned_cols=157 Identities=22% Similarity=0.314 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhcCCCC----CCCCch---HHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccC--Cchh
Q 040152 54 TQQNFFEKLSTIIDEFPRL----DDIHPF---YGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYG--DSLY 124 (293)
Q Consensus 54 ~~~~~~~~l~~~~~~~p~~----~~~~pf---y~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~--~~~~ 124 (293)
.+..++..|-+++....++ |...|- ..-+.+.+......|+...-+|..++....+...|++.+... ...+
T Consensus 199 QSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAf 278 (572)
T KOG2423|consen 199 QSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAF 278 (572)
T ss_pred chhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceee
Confidence 4467888999998887765 544454 445666676666677777778888887777777787766432 1111
Q ss_pred hhhhhHH-HhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccce
Q 040152 125 RCKSLKV-AALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTT 202 (293)
Q Consensus 125 ~~~~~~~-~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt 202 (293)
.+. +.. .+.|-+.+++++ +.++.. +.....|.++|+||+||||+||.|-..++. +++.|+-|
T Consensus 279 HAs-i~nsfGKgalI~llRQ--------------f~kLh~-dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET 342 (572)
T KOG2423|consen 279 HAS-INNSFGKGALIQLLRQ--------------FAKLHS-DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET 342 (572)
T ss_pred ehh-hcCccchhHHHHHHHH--------------HHhhcc-CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc
Confidence 111 111 111222222222 111111 123457999999999999999999998887 88888888
Q ss_pred eeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 203 KSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 203 ~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
+-...-... .++.+||+||+.-.+
T Consensus 343 KVWQYItLm---krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 343 KVWQYITLM---KRIFLIDCPGVVYPS 366 (572)
T ss_pred hHHHHHHHH---hceeEecCCCccCCC
Confidence 754432222 468999999997654
No 315
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.78 E-value=1.9e-08 Score=81.67 Aligned_cols=56 Identities=30% Similarity=0.472 Sum_probs=41.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
...+++++|.+|+||||++|++.+.... +++.+++|..... ... +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VKI-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EEc-CCCEEEEECcCC
Confidence 4568999999999999999999976543 5566666655432 222 346899999995
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.76 E-value=9e-08 Score=86.21 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=35.1
Q ss_pred hhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhc
Q 040152 133 ALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 133 ~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+++|+.+.+.+.... ....+.++.........|.++|++|+|||||++.+..
T Consensus 5 ~~~~~~~~~e~~~~~------~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 5 ALARAITLVENRHPE------AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHHHHhCCChH------HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 456666665544332 2233444554455678999999999999999999764
No 317
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.75 E-value=3e-07 Score=82.09 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhhhh
Q 040152 48 MRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRCK 127 (293)
Q Consensus 48 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (293)
...+..+.+.+.+.+.........-....+|+.+|.+.|...| ..++.+..+++.+.+. ....+...+ ..
T Consensus 38 ~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aD------vg~e~~~~i~~~l~~~-~~~~~~~~~---~~ 107 (340)
T COG0552 38 KQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEAD------VGVETAEEIIEELRKR-EGKKKKIKD---EE 107 (340)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHcc------ccHHHHHHHHHHHHHH-hcccccCCC---HH
Confidence 3445555556666665432222232355568889988888777 3567778888877764 111111111 11
Q ss_pred hhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcC------CcccccC-cc
Q 040152 128 SLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRA------DVDVQPY-AF 200 (293)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~------~~~~~~~-~~ 200 (293)
.++......+..++...... ..... .+ .+..+..|+++|-.|+||||.+-.|+.. ++..+.. .|
T Consensus 108 ~v~~~l~~~l~~il~~~~~~-~~~~~-------~~-~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF 178 (340)
T COG0552 108 TVKEALREALIEILRPVDKV-DLPLE-------IP-KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF 178 (340)
T ss_pred HHHHHHHHHHHHHhcccccc-cchhh-------hc-cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchH
Confidence 22222222232232211110 00000 01 1234678999999999999999888521 1111000 00
Q ss_pred --------------ceeeeeEEE-------E--------EecCceEEEEeCCCCCCCCCCchhHHHHHHHH---HhhccC
Q 040152 201 --------------TTKSLFVGH-------T--------DYKYLRYQVIDTPGILDRPFEDRNIIEMCSIT---ALAHLR 248 (293)
Q Consensus 201 --------------tt~~~~~~~-------~--------~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~---~l~~~~ 248 (293)
.......+. + .-.+.++.|+||+|........+++++.-... .....+
T Consensus 179 RAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap 258 (340)
T COG0552 179 RAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAP 258 (340)
T ss_pred HHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCC
Confidence 000111111 0 01246799999999987766556655543221 112223
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
+-+++|+|++. +.+...|.+.|.+.-.+ --++++|+|
T Consensus 259 ~e~llvlDAtt--Gqnal~QAk~F~eav~l-----~GiIlTKlD 295 (340)
T COG0552 259 HEILLVLDATT--GQNALSQAKIFNEAVGL-----DGIILTKLD 295 (340)
T ss_pred ceEEEEEEccc--ChhHHHHHHHHHHhcCC-----ceEEEEecc
Confidence 45899999987 55667777777776432 246678877
No 318
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.74 E-value=2.2e-08 Score=76.55 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=66.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
.+++++|..|+|||||.++|-|....... ...++|++. -.+||||-.- .+..-..++......+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK---------TQAve~~d~--~~IDTPGEy~-----~~~~~Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK---------TQAVEFNDK--GDIDTPGEYF-----EHPRWYHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc---------cceeeccCc--cccCCchhhh-----hhhHHHHHHHHHhhcc
Confidence 47999999999999999999998754221 122333322 3699999531 1111124455566667
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|++++|..+.++.+.-... |.. . ..+|+|-|++|+||
T Consensus 66 dvi~~v~~and~~s~f~p~----f~~---~-~~k~vIgvVTK~DL 102 (148)
T COG4917 66 DVIIYVHAANDPESRFPPG----FLD---I-GVKKVIGVVTKADL 102 (148)
T ss_pred ceeeeeecccCccccCCcc----ccc---c-cccceEEEEecccc
Confidence 9999999998875432221 111 1 25679999999997
No 319
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.71 E-value=2.1e-08 Score=92.51 Aligned_cols=57 Identities=32% Similarity=0.510 Sum_probs=45.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC------cccccCccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD------VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~------~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
.+++++|.+|||||||+|+|++.. ..++..|+||++..... . +..+.++||||+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCCh
Confidence 589999999999999999999753 35788999998866443 3 234689999999754
No 320
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.2e-07 Score=90.51 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCccc------cc--Cc---------cceeeeeEEEEE---ecC--ceEEEEeC
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVDV------QP--YA---------FTTKSLFVGHTD---YKY--LRYQVIDT 222 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~------~~--~~---------~tt~~~~~~~~~---~~~--~~~~iiDT 222 (293)
.....++.++|.-+.|||+|+..|....... .+ |. +++...+.-..- .++ .-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 3456799999999999999999997653211 11 11 111111111111 122 23799999
Q ss_pred CCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 223 PGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 223 pG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
||+.+...+ +..+ ...+|++++|+|+.+...++.+. +++..-. .+.|+++|+||+|.
T Consensus 205 PGHVnF~DE--------~ta~-l~~sDgvVlvvDv~EGVmlntEr---~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDE--------TTAS-LRLSDGVVLVVDVAEGVMLNTER---IIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHH--------HHHH-hhhcceEEEEEEcccCceeeHHH---HHHHHHh--ccCcEEEEEehhHH
Confidence 999765322 1122 23469999999999987777664 3444333 47999999999984
No 321
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.70 E-value=3.2e-08 Score=86.02 Aligned_cols=74 Identities=26% Similarity=0.297 Sum_probs=32.0
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhh-ccCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhh-ccCCCcEEEEEeccC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALA-HLRSAVLFFLDISGSCGYSIAQQA-ALFHSIKS-LFMNKPLIIVCNKTD 292 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~-~~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~-~~~~~piivV~NK~D 292 (293)
.+.++||||+.+.-.. .+.. ..-+..+. ...-++++++|+..... ....+ .++-.+.- ...+.|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~-~~i~~~L~~~~~~~~v~LvD~~~~~~--~~~f~s~~L~s~s~~~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSG-RKIVERLQKNGRLVVVFLVDSSFCSD--PSKFVSSLLLSLSIMLRLELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHH-HHHHHTSSS----EEEEEE-GGG-SS--HHHHHHHHHHHHHHHHHHTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEe-chhH-HHHHHHHhhhcceEEEEEEecccccC--hhhHHHHHHHHHHHHhhCCCCEEEeeeccC
Confidence 6899999999531000 0000 01112222 22358999999976322 22211 11111111 113799999999999
Q ss_pred C
Q 040152 293 L 293 (293)
Q Consensus 293 l 293 (293)
+
T Consensus 168 l 168 (238)
T PF03029_consen 168 L 168 (238)
T ss_dssp G
T ss_pred c
Confidence 6
No 322
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=6.1e-08 Score=89.53 Aligned_cols=113 Identities=26% Similarity=0.301 Sum_probs=75.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc---------------cccCccceeeeeEEEEEecC-----ceEEEEeCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD---------------VQPYAFTTKSLFVGHTDYKY-----LRYQVIDTPGIL 226 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~---------------~~~~~~tt~~~~~~~~~~~~-----~~~~iiDTpG~~ 226 (293)
+.++..++..-.-|||||..+|....-. .....+.|.-.+...+.|.. ..++++||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 3457889999999999999998643211 22234566655555555532 347999999999
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|+..+-. .++.+ +.+.|+|+|++.. .+.+...+.+-.+. .+.-+|-|+||+||
T Consensus 88 DFsYEVS-----RSLAA----CEGalLvVDAsQG--veAQTlAN~YlAle---~~LeIiPViNKIDL 140 (603)
T COG0481 88 DFSYEVS-----RSLAA----CEGALLVVDASQG--VEAQTLANVYLALE---NNLEIIPVLNKIDL 140 (603)
T ss_pred ceEEEeh-----hhHhh----CCCcEEEEECccc--hHHHHHHHHHHHHH---cCcEEEEeeecccC
Confidence 9876543 23333 4688999999984 33222223343333 47889999999997
No 323
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.69 E-value=2.1e-08 Score=81.41 Aligned_cols=60 Identities=25% Similarity=0.202 Sum_probs=36.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc-cc---cc----CccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV-DV---QP----YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~-~~---~~----~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
..++++|.+|||||||+|.|.+... .+ +. -..||...... .++ ....++||||+-+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~--~l~-~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELF--PLP-DGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEE--EET-TSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEE--ecC-CCcEEEECCCCCccccc
Confidence 4899999999999999999998632 11 11 12344443333 332 24689999999776544
No 324
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.68 E-value=1.4e-07 Score=96.64 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=67.7
Q ss_pred CCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC------------------ceEEEEeCCCCCCCCCCchhHHHHHH
Q 040152 179 VGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY------------------LRYQVIDTPGILDRPFEDRNIIEMCS 240 (293)
Q Consensus 179 ~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~------------------~~~~iiDTpG~~~~~~~~~~~~e~~~ 240 (293)
++||||+.++.+.++......+.|.++-...+.++. ..+.||||||+.+ ...+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----F~~l---- 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----FTSL---- 542 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----HHHH----
Confidence 469999999999998766677788777665555432 1279999999721 1111
Q ss_pred HHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 241 ~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.......+|++++|+|+++.. .... ...+..+.. .+.|+++|+||+|+
T Consensus 543 r~~g~~~aDivlLVVDa~~Gi--~~qT-~e~I~~lk~--~~iPiIVViNKiDL 590 (1049)
T PRK14845 543 RKRGGSLADLAVLVVDINEGF--KPQT-IEAINILRQ--YKTPFVVAANKIDL 590 (1049)
T ss_pred HHhhcccCCEEEEEEECcccC--CHhH-HHHHHHHHH--cCCCEEEEEECCCC
Confidence 112234579999999998742 2222 133344443 36899999999996
No 325
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.67 E-value=1.6e-07 Score=85.17 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.1
Q ss_pred CCCceEeecCCCCCCHhHHHHHHh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
+....|.+.|.||+|||||++.|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999874
No 326
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.66 E-value=2.8e-08 Score=78.60 Aligned_cols=115 Identities=18% Similarity=0.270 Sum_probs=74.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|.++|++..|||||+-.+.+...................+...+ ..+.+||..|..+ .+.+ +....
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~-------~~n~--lPiac 90 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE-------FINM--LPIAC 90 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHh-------hhcc--Cceee
Confidence 45899999999999999999998876422211112222222333333 4578999999721 1111 11112
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+-+|+|++|.+.+++++... .|+++.+......--|+|++|-|+
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~--~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIK--EWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHH--HHHHHHhccCCccceEEeccchHh
Confidence 2345899999999998877655 889998876543333788999884
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.66 E-value=4e-08 Score=90.00 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=41.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc-ccccCcc-------ceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADV-DVQPYAF-------TTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~-------tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
.++++|.||||||||+|+|.+... .+...+. ||++...-.... + ..++||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g--~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-G--GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-C--cEEEeCCCcccccc
Confidence 589999999999999999997643 2444444 676664433321 2 37999999977654
No 328
>PRK12288 GTPase RsgA; Reviewed
Probab=98.66 E-value=6.1e-08 Score=88.76 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=41.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc-cccCc-------cceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD-VQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~-------~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
.++++|.||||||||+|+|.+.... ++..+ +||.......+..+ ..++||||+.+....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~l~ 273 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFGLW 273 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcccCC
Confidence 4899999999999999999976532 33332 35655554443322 359999999887654
No 329
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.64 E-value=1.3e-07 Score=83.29 Aligned_cols=69 Identities=28% Similarity=0.329 Sum_probs=52.8
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcC------CcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRA------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRN 234 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~------~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~ 234 (293)
....++.|+|.||+|||||+|++... ...+...|+.|+.+....--.+...++++||||++.....+.+
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence 35679999999999999999998532 2337788999988776544445567999999999877555443
No 330
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.64 E-value=6.8e-08 Score=84.44 Aligned_cols=58 Identities=26% Similarity=0.242 Sum_probs=41.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc-ccc-------CccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD-VQP-------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~-~~~-------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
.++++|.+|||||||+|+|.+.... +++ ..+||+....-.. .+ ..++||||+......
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~l~ 187 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFGLW 187 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccCCC
Confidence 7899999999999999999976432 222 2346766655444 22 379999999886554
No 331
>PRK13796 GTPase YqeH; Provisional
Probab=98.64 E-value=4.2e-08 Score=90.65 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=43.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC------cccccCccceeeeeEEEEEecCceEEEEeCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD------VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILD 227 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~------~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~ 227 (293)
.++.++|.||||||||+|+|.+.. ..++..|+||++.....+ + ....++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C-CCcEEEECCCccc
Confidence 479999999999999999998532 236788999998765433 2 2257999999964
No 332
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2e-07 Score=88.10 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=76.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC----------------------Cc---------ccccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA----------------------DV---------DVQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~----------------------~~---------~~~~~~~tt~~~~~~~~~~~~~ 215 (293)
.....+++|..++|||||+-+|.-. .+ ......+.|.+.....++.+..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 3458999999999999999887521 00 1122345677777777777777
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCC---CCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGS---CGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~---~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
.+.|+|+||+-++-+.. .+-...+|+.++|+|++.. .+|....|.+-...+-....-..+|+++||+|
T Consensus 256 ~~tliDaPGhkdFi~nm---------i~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD 326 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNM---------ISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMD 326 (603)
T ss_pred eEEEecCCCccccchhh---------hccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccc
Confidence 89999999986653221 1123346999999999873 34443333322222222223467899999999
Q ss_pred C
Q 040152 293 L 293 (293)
Q Consensus 293 l 293 (293)
+
T Consensus 327 ~ 327 (603)
T KOG0458|consen 327 L 327 (603)
T ss_pred c
Confidence 5
No 333
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.54 E-value=1.3e-07 Score=79.78 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=76.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecC-ceEEEEeCCCCCCCCCCchhHHHHHH---HH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDRNIIEMCS---IT 242 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~~~~~~~~~~e~~~---~~ 242 (293)
.++|+++|.+|+||||+=..+...-.. ....++.|.++..++..+-| .-+.+||+.|+ + ..+|... -.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq------e-~fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ------E-EFMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCc------H-HHHHHHHhhcch
Confidence 458999999999999987665533322 34456778888888887765 56799999998 2 2222211 11
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHH----HHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQA----ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~----~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
......+++++|+|++... .+..+ +-++.+....+...+.+.+.|+||
T Consensus 77 ~iF~nV~vli~vFDves~e---~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDL 128 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESRE---MEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDL 128 (295)
T ss_pred hhheeheeeeeeeeccchh---hhhhHHHHHHHHHHHHhcCCcceEEEEEeechh
Confidence 1222348999999998742 22222 234444444466778899999996
No 334
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.53 E-value=6e-07 Score=80.30 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=77.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-----------------c----------------cccCccceeeeeEEEEEec
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-----------------D----------------VQPYAFTTKSLFVGHTDYK 213 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-----------------~----------------~~~~~~tt~~~~~~~~~~~ 213 (293)
...+.+-+|...-||||||-+|+...- . .....+.|.+.....+.-+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 345799999999999999999863210 0 0112367888888888888
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..++.+.||||+.+. -..+.+-+..||+.++++|+-. + ..+|-+-...+..+..-+.+++.+||+||
T Consensus 85 KRkFIiADTPGHeQY---------TRNMaTGASTadlAIlLVDAR~--G--vl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGHEQY---------TRNMATGASTADLAILLVDARK--G--VLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcHHHH---------hhhhhcccccccEEEEEEecch--h--hHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 889999999998211 0122334445699999999965 2 23333334444444445679999999997
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.52 E-value=2.6e-07 Score=80.03 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=58.7
Q ss_pred CCCceEeecCCCCCCHhHHHHHHh------cCCcc---cccCcccee-----------------eeeEEEEE--------
Q 040152 166 PNTRTILICGYPNVGKSSFMNKIT------RADVD---VQPYAFTTK-----------------SLFVGHTD-------- 211 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~------~~~~~---~~~~~~tt~-----------------~~~~~~~~-------- 211 (293)
++...|.+.|+||+|||||+++|. +.++. +.+..+.|- +.+.....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 466799999999999999999985 22322 122111111 11122211
Q ss_pred ------------ecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc
Q 040152 212 ------------YKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF 279 (293)
Q Consensus 212 ------------~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~ 279 (293)
..|.++.|+.|.|.+. ++ ....+.+|.+++|+-+...+..+..+. -++ ++
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQ------sE------~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka-Gim-Ei---- 168 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQ------SE------VDIADMADTVVLVLVPGLGDEIQAIKA-GIM-EI---- 168 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSST------HH------HHHHTTSSEEEEEEESSTCCCCCTB-T-THH-HH----
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCc------cH------HHHHHhcCeEEEEecCCCccHHHHHhh-hhh-hh----
Confidence 1256899999999842 22 234566899999998876554443221 122 22
Q ss_pred CCCcEEEEEeccCC
Q 040152 280 MNKPLIIVCNKTDL 293 (293)
Q Consensus 280 ~~~piivV~NK~Dl 293 (293)
.=++|+||+|+
T Consensus 169 ---aDi~vVNKaD~ 179 (266)
T PF03308_consen 169 ---ADIFVVNKADR 179 (266)
T ss_dssp ----SEEEEE--SH
T ss_pred ---ccEEEEeCCCh
Confidence 33899999983
No 336
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4e-07 Score=87.94 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=78.7
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec------------------CceEEEEeCCCCCC
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------------YLRYQVIDTPGILD 227 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~~~iiDTpG~~~ 227 (293)
-+.+.++|+|...+|||-|+..+.+.++....+.+.|..+....+... --.+.+|||||+-.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 356789999999999999999999998877777777765544433322 12478999999732
Q ss_pred CCCCchhHHHHHHH-HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 228 RPFEDRNIIEMCSI-TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 228 ~~~~~~~~~e~~~~-~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
+ ..+ .....++|.+++|+|+.+.......+.+++| +. .+.|+|+.+||+|
T Consensus 553 F----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lL---R~--rktpFivALNKiD 603 (1064)
T KOG1144|consen 553 F----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLL---RM--RKTPFIVALNKID 603 (1064)
T ss_pred h----------hhhhhccccccceEEEEeehhccCCcchhHHHHHH---Hh--cCCCeEEeehhhh
Confidence 1 111 2234457999999999985433333333444 33 5789999999998
No 337
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.51 E-value=8.5e-08 Score=82.27 Aligned_cols=92 Identities=27% Similarity=0.454 Sum_probs=75.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
.++.++|.|.+||||+++.|++...++..|.|||.....|...+++.++++.|.||+++.....+..- ..+.+.++.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg--~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG--KQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc--cEEEEEeecc
Confidence 47999999999999999999999888999999999999999999999999999999988544332110 1223455667
Q ss_pred cEEEEEEeCCCCCC
Q 040152 249 SAVLFFLDISGSCG 262 (293)
Q Consensus 249 d~il~v~D~s~~~~ 262 (293)
++++.|+|+-.|.+
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 89999999987643
No 338
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.48 E-value=5.1e-07 Score=79.96 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=39.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc-c---ccc----CccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADV-D---VQP----YAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~-~---~~~----~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
..+++|.+|||||||+|+|.+... . ++. --.||.....-++.-+ -.|+||||+-+...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccCc
Confidence 789999999999999999986432 1 221 2245555444444323 37999999977654
No 339
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.48 E-value=8.9e-07 Score=93.13 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=68.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCc--cceeee-eEEEEEe-cCceEEEEeCCCCCCCCC--CchhHHHHHHH-H
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYA--FTTKSL-FVGHTDY-KYLRYQVIDTPGILDRPF--EDRNIIEMCSI-T 242 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~--~tt~~~-~~~~~~~-~~~~~~iiDTpG~~~~~~--~~~~~~e~~~~-~ 242 (293)
=.+|+|++|+||||+++.- |-.+...+.. ..+.+. ...+++| -.....++||+|...... .+.+.-++..+ .
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 3899999999999999876 5555432210 011110 0112222 123568999999754321 11111122222 2
Q ss_pred Hhhcc-----CcEEEEEEeCCCCCCCCHHHHH-------HHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 243 ALAHL-----RSAVLFFLDISGSCGYSIAQQA-------ALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~-----~d~il~v~D~s~~~~~~~~~~~-------~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
.+... .|+||+++|+++-...+.++.. ..+.++... ....|+++|+||||+
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 22211 3899999999886544443221 223444433 358999999999996
No 340
>PRK14974 cell division protein FtsY; Provisional
Probab=98.48 E-value=1.2e-06 Score=79.83 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=38.9
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.++.|+||||...........+. .+.. .-.+|.+++|+|++. +.+...+...+... -..--+++||.|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~--~i~~-~~~pd~~iLVl~a~~--g~d~~~~a~~f~~~-----~~~~giIlTKlD~ 291 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELK--KIVR-VTKPDLVIFVGDALA--GNDAVEQAREFNEA-----VGIDGVILTKVDA 291 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHH--HHHH-hhCCceEEEeecccc--chhHHHHHHHHHhc-----CCCCEEEEeeecC
Confidence 356899999998653322222221 1111 113588999999976 33444433333221 1245788899983
No 341
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.48 E-value=1.2e-06 Score=77.05 Aligned_cols=56 Identities=30% Similarity=0.396 Sum_probs=35.7
Q ss_pred HhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHh
Q 040152 132 AALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 132 ~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
.++.|..++...-...-+.+ .++.+..+....++...|.+.|.||+|||||+..|.
T Consensus 17 rAlARaITlvEs~~~~h~~~--a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 17 RALARAITLVESRRPDHRAL--ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred HHHHHHHHHHhcCCchhhhH--HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHH
Confidence 34455555544433322111 234444455555677799999999999999999985
No 342
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.48 E-value=2e-05 Score=78.45 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|+++|++||||||++..|.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 347899999999999999998753
No 343
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.45 E-value=1.7e-07 Score=84.90 Aligned_cols=168 Identities=15% Similarity=0.242 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhcCCCC----CCCCch---HHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCc--hhhhh
Q 040152 57 NFFEKLSTIIDEFPRL----DDIHPF---YGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDS--LYRCK 127 (293)
Q Consensus 57 ~~~~~l~~~~~~~p~~----~~~~pf---y~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~--~~~~~ 127 (293)
-+.+.+.++++...++ |-..|- ..+..++.....--|.-.+-+|..+........+|...++.... ...+.
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkas 214 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKAS 214 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecc
Confidence 3445566665555543 544454 33455554322222666677888999999999999998875432 11111
Q ss_pred hhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCC--CCCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceee
Q 040152 128 SLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSI--DPNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKS 204 (293)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~ 204 (293)
...... .+...+...++ ..+.....++....- -....++.|+|+|||||||+||+|...... +++.|+.|+.
T Consensus 215 t~~~~~----~~~~~~~s~c~-gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s 289 (435)
T KOG2484|consen 215 TQMQNS----NSKNLQSSVCF-GAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS 289 (435)
T ss_pred cccccc----cccccccchhh-hHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh
Confidence 111000 00000000110 011111222221111 135678999999999999999999988775 7888888887
Q ss_pred eeEEEEEecCceEEEEeCCCCCCCCCCc
Q 040152 205 LFVGHTDYKYLRYQVIDTPGILDRPFED 232 (293)
Q Consensus 205 ~~~~~~~~~~~~~~iiDTpG~~~~~~~~ 232 (293)
...-+.+ ..+.|+|.||++-.+..+
T Consensus 290 mqeV~Ld---k~i~llDsPgiv~~~~~~ 314 (435)
T KOG2484|consen 290 MQEVKLD---KKIRLLDSPGIVPPSIDE 314 (435)
T ss_pred hhheecc---CCceeccCCceeecCCCc
Confidence 7655443 568999999997654433
No 344
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.44 E-value=6.8e-06 Score=72.94 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....|+++|++|+||||++..|.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999998875
No 345
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.42 E-value=1.5e-08 Score=82.55 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc---eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL---RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~---~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
.++++|+|+-|+||||++.+.....+..........+.......|++. ++++||..|+.....-. ..+
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt---------rVy 95 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT---------RVY 95 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE---------EEE
Confidence 358999999999999999998877664333222333344444556553 57999999983221111 224
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-----cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-----~~~~piivV~NK~Dl 293 (293)
+..+.+...|||+|....|+... .|-.++..- ....|+++..||||+
T Consensus 96 ykea~~~~iVfdvt~s~tfe~~s--kwkqdldsk~qLpng~Pv~~vllankCd~ 147 (229)
T KOG4423|consen 96 YKEAHGAFIVFDVTRSLTFEPVS--KWKQDLDSKLQLPNGTPVPCVLLANKCDQ 147 (229)
T ss_pred ecCCcceEEEEEccccccccHHH--HHHHhccCcccCCCCCcchheeccchhcc
Confidence 44568889999999988877665 566665432 245788999999995
No 346
>PRK00098 GTPase RsgA; Reviewed
Probab=98.41 E-value=9.4e-07 Score=79.53 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=39.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCc-------cceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~-------~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
..++++|.+|||||||+|+|.+.... +...+ .||+........ + ...++||||+.....
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~--~-~~~~~DtpG~~~~~~ 231 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP--G-GGLLIDTPGFSSFGL 231 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC--C-CcEEEECCCcCccCC
Confidence 37999999999999999999876432 22222 355544433332 2 248999999986443
No 347
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=7.4e-07 Score=72.66 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=19.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|..|+|||||++.+...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998765
No 348
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.5e-07 Score=85.64 Aligned_cols=113 Identities=24% Similarity=0.216 Sum_probs=77.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHh---cCC-----cc----------cccCccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT---RAD-----VD----------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~---~~~-----~~----------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
..++|.++..-.+||||...++. |.- +. .....+.|.......++|+|.+++++||||+.|+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34589999999999999998874 211 10 1123356777777788999999999999999987
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+-. .+++.+ |+++.|+|+|.......... |-. ... -+.|.++.+||+|.
T Consensus 116 ~leve-----rclrvl----dgavav~dasagve~qtltv--wrq-adk--~~ip~~~finkmdk 166 (753)
T KOG0464|consen 116 RLEVE-----RCLRVL----DGAVAVFDASAGVEAQTLTV--WRQ-ADK--FKIPAHCFINKMDK 166 (753)
T ss_pred EEEHH-----HHHHHh----cCeEEEEeccCCcccceeee--ehh-ccc--cCCchhhhhhhhhh
Confidence 65432 344444 89999999998543332222 222 111 37899999999983
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.9e-06 Score=79.59 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=69.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeE---------------------------------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFV--------------------------------------- 207 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~--------------------------------------- 207 (293)
...+|++.|.+++||||++|++...++.+++..+||.-...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 34589999999999999999998766554443333321110
Q ss_pred ----EEEEecC-------ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHh
Q 040152 208 ----GHTDYKY-------LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIK 276 (293)
Q Consensus 208 ----~~~~~~~-------~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~ 276 (293)
-.+-|++ .++.++|.||..-.+.. ...+-.....+|+++||..+.+... ..+ .+.+....
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~------tswid~~cldaDVfVlV~NaEntlt--~se-k~Ff~~vs 258 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL------TSWIDSFCLDADVFVLVVNAENTLT--LSE-KQFFHKVS 258 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhh------hHHHHHHhhcCCeEEEEecCccHhH--HHH-HHHHHHhh
Confidence 0111111 25789999998543321 1333445556799999999877432 222 24455444
Q ss_pred hccCCCcEEEEEeccCC
Q 040152 277 SLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 277 ~~~~~~piivV~NK~Dl 293 (293)
. ....+.++.||+|.
T Consensus 259 ~--~KpniFIlnnkwDa 273 (749)
T KOG0448|consen 259 E--EKPNIFILNNKWDA 273 (749)
T ss_pred c--cCCcEEEEechhhh
Confidence 3 23345666778783
No 350
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.30 E-value=0.00017 Score=68.63 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...++++|++||||||++..|++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999874
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.2e-05 Score=75.86 Aligned_cols=142 Identities=23% Similarity=0.352 Sum_probs=83.2
Q ss_pred hhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHH---hhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcc--cccCc
Q 040152 125 RCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQH---MARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVD--VQPYA 199 (293)
Q Consensus 125 ~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~ 199 (293)
.++..-.++.|+|+....+..+ +++-.-+ ..+.|.-.+.++.++++|+||+|||||+..|...-.. .....
T Consensus 27 naKafavAa~G~mar~~~rtad----i~ekklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~ 102 (1077)
T COG5192 27 NAKAFAVAAIGQMARQAMRTAD----IEEKKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR 102 (1077)
T ss_pred chhhhhhhchHHHHHHHhhccc----hhhhccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC
Confidence 3445555566776654433222 2222112 2355666677888889999999999999998754221 11110
Q ss_pred -cceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc
Q 040152 200 -FTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL 278 (293)
Q Consensus 200 -~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~ 278 (293)
+.| .+.-...++++..+|.- . .++...+..+|+||+++|... +|..+. ++.+.-+..
T Consensus 103 GPiT------vvsgK~RRiTflEcp~D-------l-----~~miDvaKIaDLVlLlIdgnf--GfEMET-mEFLnil~~- 160 (1077)
T COG5192 103 GPIT------VVSGKTRRITFLECPSD-------L-----HQMIDVAKIADLVLLLIDGNF--GFEMET-MEFLNILIS- 160 (1077)
T ss_pred CceE------EeecceeEEEEEeChHH-------H-----HHHHhHHHhhheeEEEecccc--CceehH-HHHHHHHhh-
Confidence 111 11122356889999852 2 223344556799999999975 665543 355555554
Q ss_pred cCCCc-EEEEEeccCC
Q 040152 279 FMNKP-LIIVCNKTDL 293 (293)
Q Consensus 279 ~~~~p-iivV~NK~Dl 293 (293)
.+.| ++.|++..||
T Consensus 161 -HGmPrvlgV~ThlDl 175 (1077)
T COG5192 161 -HGMPRVLGVVTHLDL 175 (1077)
T ss_pred -cCCCceEEEEeeccc
Confidence 3555 5678888885
No 352
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.28 E-value=4.5e-05 Score=71.91 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
.+..|+++|.+|+||||++..|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999998875
No 353
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=5.3e-06 Score=76.42 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....|+++|++||||||++..|.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999999986
No 354
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=8e-06 Score=71.57 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=70.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC----------cc------cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD----------VD------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~----------~~------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
..+|..+|..+-|||||..+++..- +. .....+.|.+...-.++..+..+-.+|+||+.|
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD---- 87 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 87 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH----
Confidence 3589999999999999999986321 11 111235666666556666777899999999832
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
++. .+.+-+...|+.++|+.+++....+..+.+-+.++ -+.| +++++||+|+
T Consensus 88 ---YvK--NMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq-----vGvp~ivvflnK~Dm 140 (394)
T COG0050 88 ---YVK--NMITGAAQMDGAILVVAATDGPMPQTREHILLARQ-----VGVPYIVVFLNKVDM 140 (394)
T ss_pred ---HHH--HHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh-----cCCcEEEEEEecccc
Confidence 222 12222333488888888887433333332222222 3554 6788999996
No 355
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.24 E-value=2.2e-06 Score=76.75 Aligned_cols=58 Identities=24% Similarity=0.167 Sum_probs=38.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cc-------cCccceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQ-------PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~-------~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
..++++|++|||||||+|.|.+.... +. ....||...... ...+ ...++||||+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~--~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELF--PLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEE--EcCC-CCEEEECCCCCccC
Confidence 37999999999999999999986532 11 122345544332 2321 23799999996643
No 356
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.24 E-value=5.3e-06 Score=75.26 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=57.2
Q ss_pred eeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCH--------HHHHHHHH
Q 040152 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSI--------AQQAALFH 273 (293)
Q Consensus 202 t~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~--------~~~~~~l~ 273 (293)
|.++....+.+++..+.++|.+|+.. ++ ..+..+.+.+++|+||++.|+-+-... .+.+++++
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRs----eR-----rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~ 252 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRS----ER-----KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFE 252 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHH----Hh-----hhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHH
Confidence 45555556677788899999999721 22 222335666799999999987432211 12246777
Q ss_pred HHhhc--cCCCcEEEEEeccCC
Q 040152 274 SIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 274 ~l~~~--~~~~piivV~NK~Dl 293 (293)
.+... |.+.++|+.+||.||
T Consensus 253 sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 253 SICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred HHhcCcccccCcEEEEeecHHH
Confidence 77654 678999999999996
No 357
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=2.7e-06 Score=73.82 Aligned_cols=122 Identities=22% Similarity=0.314 Sum_probs=70.7
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEE--EEEe--cC--ceEEEEeCCCCCCCCCCc------h
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG--HTDY--KY--LRYQVIDTPGILDRPFED------R 233 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~--~~~~--~~--~~~~iiDTpG~~~~~~~~------~ 233 (293)
+-.++|+.+|.+|.|||||+..|.+.++...+.+.+-...... .++. .+ .++.++||.|++|.-..+ -
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 3568999999999999999999999888754443332222221 1221 22 257999999999842111 1
Q ss_pred hHHHHH---------HH-HHh--hcc--CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 234 NIIEMC---------SI-TAL--AHL--RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 234 ~~~e~~---------~~-~~l--~~~--~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
.++..+ .+ +.+ ++. .+++||.+.++.. ++...+. - .++.+.+...+|-|+-|.|
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDL-v---tmk~LdskVNIIPvIAKaD 187 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDL-V---TMKKLDSKVNIIPVIAKAD 187 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHH-H---HHHHHhhhhhhHHHHHHhh
Confidence 111111 01 111 222 2689999999875 3333332 1 2333334566777777776
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=0.00039 Score=64.88 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=19.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...++++|++||||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 359
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=3e-05 Score=80.24 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=71.6
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccC--ccceeeeeEEEEEec-CceEEEEeCCCCCCCC--CCchhHHHHHHH----
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPY--AFTTKSLFVGHTDYK-YLRYQVIDTPGILDRP--FEDRNIIEMCSI---- 241 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~--~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~--~~~~~~~e~~~~---- 241 (293)
-+|+|+||+||||++. -+|.++..... ...+......+++|- +..-.+|||.|-.-.. ..+.+.-+++.+
T Consensus 128 y~viG~pgsGKTtal~-~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALL-NSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHh-cccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 7888999999999884 34554442211 111111113334432 2357899999986543 223344444433
Q ss_pred HHhhcc--CcEEEEEEeCCCCCCCCHHHHHHH-------HHHHhhc-cCCCcEEEEEeccCC
Q 040152 242 TALAHL--RSAVLFFLDISGSCGYSIAQQAAL-------FHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~--~d~il~v~D~s~~~~~~~~~~~~~-------l~~l~~~-~~~~piivV~NK~Dl 293 (293)
...... -|+|++.+|+++-.+.+....... +.++.+. ....|+++++||.|+
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 111111 289999999998666655544222 3344433 357999999999996
No 360
>PRK10867 signal recognition particle protein; Provisional
Probab=98.17 E-value=0.00015 Score=68.22 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=18.7
Q ss_pred CceEeecCCCCCCHhHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~ 189 (293)
+..|+++|.+|+||||++..|+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 5679999999999999776664
No 361
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.8e-05 Score=70.75 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=66.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-------cccCccceeeeeEEEEEec---------CceEEEEeCCCCCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-------VQPYAFTTKSLFVGHTDYK---------YLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-------~~~~~~tt~~~~~~~~~~~---------~~~~~iiDTpG~~~~~~~ 231 (293)
..++.+.|...+|||||..+|+.-... .+...+.|.+.-...+... ...+.++|+||+.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----
Confidence 478999999999999999999743221 1112233444333332221 1357899999982
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+ .++..-+..-|..++|+|+........++.+ ++.++. -...++|+||+|+
T Consensus 82 --sLI--RtiiggaqiiDlm~lviDv~kG~QtQtAEcL-iig~~~----c~klvvvinkid~ 134 (522)
T KOG0461|consen 82 --SLI--RTIIGGAQIIDLMILVIDVQKGKQTQTAECL-IIGELL----CKKLVVVINKIDV 134 (522)
T ss_pred --HHH--HHHHhhhheeeeeeEEEehhcccccccchhh-hhhhhh----ccceEEEEecccc
Confidence 111 2233333345899999999875433333322 233332 3467899999985
No 362
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=6.8e-06 Score=79.89 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccccc------------CccceeeeeEEEE----EecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQP------------YAFTTKSLFVGHT----DYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~------------~~~tt~~~~~~~~----~~~~~~~~iiDTpG~~~~~~ 230 (293)
..+++.++....-|||||...|...+--.+. ..-.|++++.... ..++..+++||+||+.|+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 4568999999999999999998755432211 1112333333221 22556789999999988753
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
+ +.+....+|+.++++|+-+...-... .++++.-. .+...++|+||+|
T Consensus 88 e---------vssas~l~d~alvlvdvvegv~~qt~---~vlrq~~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 88 E---------VSSASRLSDGALVLVDVVEGVCSQTY---AVLRQAWI--EGLKPILVINKID 135 (887)
T ss_pred h---------hhhhhhhcCCcEEEEeeccccchhHH---HHHHHHHH--ccCceEEEEehhh
Confidence 2 22234456999999999874322222 33332211 3567899999999
No 363
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.15 E-value=7.7e-06 Score=69.07 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.9
Q ss_pred ceEeecCCCCCCHhHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~ 189 (293)
..|+++|++||||||.+-+|.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 368999999999999998885
No 364
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.15 E-value=0.00016 Score=68.32 Aligned_cols=124 Identities=21% Similarity=0.242 Sum_probs=74.2
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCccc------------------ccC----------------------------
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVDV------------------QPY---------------------------- 198 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~------------------~~~---------------------------- 198 (293)
..+.++|+|+|...+||||.+..+..+...+ .++
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 3467899999999999999999886543210 000
Q ss_pred --------ccceeeeeEEEEEecC---ceEEEEeCCCCCCC-----CCCchhHHHHHHHHHhhccCcEEEEEEe-CCCCC
Q 040152 199 --------AFTTKSLFVGHTDYKY---LRYQVIDTPGILDR-----PFEDRNIIEMCSITALAHLRSAVLFFLD-ISGSC 261 (293)
Q Consensus 199 --------~~tt~~~~~~~~~~~~---~~~~iiDTpG~~~~-----~~~~~~~~e~~~~~~l~~~~d~il~v~D-~s~~~ 261 (293)
.+.|.+..+-.....| .+..++|.||++.. ..+....+... -.++...+++|++|+. .|-..
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~m-sKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSI-SKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHH-HHHHhcCCCeEEEEeccCCcch
Confidence 0223333333333333 35789999999863 22333444322 2455566788888874 33211
Q ss_pred CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 262 GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 262 ~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.-+. .-.+...+.+ .+...|+|++|.||
T Consensus 464 ERSn--VTDLVsq~DP--~GrRTIfVLTKVDl 491 (980)
T KOG0447|consen 464 ERSI--VTDLVSQMDP--HGRRTIFVLTKVDL 491 (980)
T ss_pred hhhh--HHHHHHhcCC--CCCeeEEEEeecch
Confidence 1111 1245556655 47889999999996
No 365
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=0.00015 Score=67.32 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
.+..|+++|++||||||.+..|.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999998886
No 366
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.14 E-value=0.00015 Score=66.73 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|+++|++||||||.+..|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999999888643
No 367
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.8e-06 Score=80.77 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=76.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC---cc---------------cccCccceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD---VD---------------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~---~~---------------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
.++|.++-+-.+||||+.+++.... .. .....++|.......+.|.+.++++|||||+.|+.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 4578888999999999999875211 10 11233567777777888988999999999999876
Q ss_pred CCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 230 FEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
.+-. .+ +.-. |+.++|+|+.....-... ..-++++. .+.|.|..+||+|
T Consensus 119 ~EVe-----RA---LrVl-DGaVlvl~aV~GVqsQt~---tV~rQ~~r--y~vP~i~FiNKmD 167 (721)
T KOG0465|consen 119 FEVE-----RA---LRVL-DGAVLVLDAVAGVESQTE---TVWRQMKR--YNVPRICFINKMD 167 (721)
T ss_pred EEeh-----hh---hhhc-cCeEEEEEcccceehhhH---HHHHHHHh--cCCCeEEEEehhh
Confidence 5432 23 3333 888889998774322222 22334444 4899999999998
No 368
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.4e-05 Score=73.72 Aligned_cols=111 Identities=20% Similarity=0.089 Sum_probs=78.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc---cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~---~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.|+-+|.---|||||+.++++..-. .....++|.+........++..+.++|.||+.+. + .++.+-..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-------i--~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-------I--SNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-------H--HHHHhhhc
Confidence 4778899999999999999987543 3446689999988888888888999999998211 1 22223333
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..|..++|+|+.+.......+.+..++.+ .....++|+||+|.
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdll----gi~~giivltk~D~ 115 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLL----GIKNGIIVLTKADR 115 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhc----CCCceEEEEecccc
Confidence 46999999999774333333333333332 34556999999995
No 369
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=0.00027 Score=67.67 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+++|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988864
No 370
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.10 E-value=2.3e-05 Score=74.45 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=71.5
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
+.+-+...++|+.|+|||.+++++.|..+.-+....+.....+..+...+. -+.+-|.+-.....+.+.
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~k--------- 492 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSK--------- 492 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCc---------
Confidence 345678999999999999999999998776533333333333333333332 244555443311111221
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++.++||.|++.++.... .++..-.. ....|++.|+.|+|+
T Consensus 493 --e~~cDv~~~~YDsS~p~sf~~~a--~v~~~~~~-~~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 493 --EAACDVACLVYDSSNPRSFEYLA--EVYNKYFD-LYKIPCLMVATKADL 538 (625)
T ss_pred --cceeeeEEEecccCCchHHHHHH--HHHHHhhh-ccCCceEEEeecccc
Confidence 12369999999999887766543 22222222 258999999999996
No 371
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.10 E-value=7.9e-06 Score=62.85 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=53.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+++++|..|+|||+|+.++....+...+.. .|.. +...| ......++
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~-~t~~------------~~~~~--------------------~~~~~s~~ 48 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYVPTV-FTIG------------IDVYD--------------------PTSYESFD 48 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccccCce-ehhh------------hhhcc--------------------ccccCCCC
Confidence 799999999999999999976665422210 1111 11111 11223347
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
.++.|+|.+...+++.. |...+... ..+.|.++++||.|+
T Consensus 49 ~~~~v~~~~~~~s~~~~----~~~~i~~~~k~dl~~~~~~nk~dl 89 (124)
T smart00010 49 VVLQCWRVDDRDSADNK----NVPEVLVGNKSDLPILVGGNRDVL 89 (124)
T ss_pred EEEEEEEccCHHHHHHH----hHHHHHhcCCCCCcEEEEeechhh
Confidence 88888998886554322 33333322 246788999999985
No 372
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.4e-05 Score=70.94 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=67.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc---cc---------cCccceeee-----------eEEEEEecC------ceE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD---VQ---------PYAFTTKSL-----------FVGHTDYKY------LRY 217 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~---~~---------~~~~tt~~~-----------~~~~~~~~~------~~~ 217 (293)
...+|.++|...-|||||..+|+|-... .. .|.-++.-- ....+...+ +.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4568999999999999999999864211 00 010000000 000011111 357
Q ss_pred EEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 218 QVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 218 ~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.|+|.||+ +.+ +.++..-+..-|+.++|++++++|........-..-++- .-+.+|+|-||+||
T Consensus 89 SfVDaPGH--------e~L-MATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDl 152 (415)
T COG5257 89 SFVDAPGH--------ETL-MATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDL 152 (415)
T ss_pred EEeeCCch--------HHH-HHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccce
Confidence 89999997 222 222222223348999999999998765443211111222 24679999999997
No 373
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=1.9e-05 Score=72.79 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....++++|++||||||++.+|..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999874
No 374
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.05 E-value=0.00012 Score=68.94 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.6
Q ss_pred CceEeecCCCCCCHhHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~ 189 (293)
+..++++|.+|+||||++..|.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999976654
No 375
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=0.00017 Score=67.57 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....++++|++|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988753
No 376
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.00 E-value=2e-05 Score=67.13 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..+.|+++|++|+|||||++++...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998743
No 377
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.98 E-value=0.00056 Score=64.55 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...++++|++||||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999887753
No 378
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=3.6e-05 Score=70.72 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....++++|++||||||++..|.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999886
No 379
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.87 E-value=0.00028 Score=58.09 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=36.8
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc--cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEecc
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAH--LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKT 291 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~--~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~ 291 (293)
+..+.++||||..... ...++. +..+.+ ..|.+++|+|+... .+.. +....+.... + ..-+|+||+
T Consensus 82 ~~d~viiDt~g~~~~~---~~~l~~--l~~l~~~~~~~~~~lVv~~~~~--~~~~---~~~~~~~~~~-~-~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQID---ENLMEE--LKKIKRVVKPDEVLLVVDAMTG--QDAV---NQAKAFNEAL-G-ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchhh---HHHHHH--HHHHHhhcCCCeEEEEEECCCC--hHHH---HHHHHHHhhC-C-CCEEEEECC
Confidence 4468999999974321 111211 111221 26899999998642 1222 3333333221 2 356888999
Q ss_pred CC
Q 040152 292 DL 293 (293)
Q Consensus 292 Dl 293 (293)
|.
T Consensus 150 D~ 151 (173)
T cd03115 150 DG 151 (173)
T ss_pred cC
Confidence 84
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.81 E-value=0.00012 Score=58.96 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.7
Q ss_pred EeecCCCCCCHhHHHHHHhc
Q 040152 171 ILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~ 190 (293)
+.++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999999988853
No 381
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.81 E-value=0.00019 Score=65.91 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=57.5
Q ss_pred ceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCC--------CCHHHHHHHH
Q 040152 201 TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCG--------YSIAQQAALF 272 (293)
Q Consensus 201 tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~--------~~~~~~~~~l 272 (293)
.|.+.....+.+++..+.+||.+|+.. ++ ..+..+...+++|+||+|+|+-+. .-..+.+.++
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~----~R-----~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f 240 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRS----ER-----KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLF 240 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchh----hh-----hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHH
Confidence 456677777888888999999999721 22 222335566799999999997321 1122333556
Q ss_pred HHHhhc--cCCCcEEEEEeccCC
Q 040152 273 HSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 273 ~~l~~~--~~~~piivV~NK~Dl 293 (293)
+.+... +.+.|+++++||.|+
T Consensus 241 ~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 241 ESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred HHHHcCccccCCcEEEEEecHHh
Confidence 665542 468999999999995
No 382
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00047 Score=55.61 Aligned_cols=113 Identities=21% Similarity=0.282 Sum_probs=59.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC----CcccccCccceeeeeEEEEEecCc--eEEEEeCC-CCC--------CCC--
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA----DVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTP-GIL--------DRP-- 229 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~----~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTp-G~~--------~~~-- 229 (293)
...+|.+.|.|||||||++.++.+. .+.+. ++....+.-++. .+.++|.. |-. ..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-------Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-------GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee-------eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 3568999999999999999887632 22222 222222332332 25666655 210 011
Q ss_pred ---CCchhHHHHHHHHHhh---ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEec
Q 040152 230 ---FEDRNIIEMCSITALA---HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 230 ---~~~~~~~e~~~~~~l~---~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK 290 (293)
...-..++..+..++. ..||+ .++|=-.+..+......+.++++.. .++|+|.++-+
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElks~~f~~~ve~vl~--~~kpliatlHr 139 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELKSKKFREAVEEVLK--SGKPLIATLHR 139 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhccHHHHHHHHHHhc--CCCcEEEEEec
Confidence 0112223333333333 23575 4577666665555544445555544 57888877764
No 383
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.001 Score=61.67 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
.+..|+++|--|+||||..-.|.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHH
Confidence 34579999999999999988875
No 384
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0013 Score=61.56 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHh
Q 040152 147 SLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 147 ~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
+.+.|+.+....++ .++..|++||-.||||||=+..++
T Consensus 362 sVDlLRdI~sar~~-----krPYVi~fvGVNGVGKSTNLAKIa 399 (587)
T KOG0781|consen 362 SVDLLRDIMSARRR-----KRPYVISFVGVNGVGKSTNLAKIA 399 (587)
T ss_pred hhhHHHHHHHHHhc-----CCCeEEEEEeecCccccchHHHHH
Confidence 34455555443332 267799999999999999887764
No 385
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.71 E-value=0.00014 Score=66.13 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=56.4
Q ss_pred ceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCC--------CHHHHHHHH
Q 040152 201 TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGY--------SIAQQAALF 272 (293)
Q Consensus 201 tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~--------~~~~~~~~l 272 (293)
.|.++....+.+++..+.+||++|+.. ++ .....+...+++|+||+|.++.+.. ...+.+..+
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~----~R-----~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f 217 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRS----ER-----KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLF 217 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcc----cc-----hhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHH
Confidence 355667777788888999999999732 22 2223345567999999999974211 122223455
Q ss_pred HHHhhc--cCCCcEEEEEeccCC
Q 040152 273 HSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 273 ~~l~~~--~~~~piivV~NK~Dl 293 (293)
..+... +.+.|+++++||.|+
T Consensus 218 ~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 218 DSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred HHHHhCccccCCCEEEEccChHH
Confidence 555442 468999999999995
No 386
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.69 E-value=0.00014 Score=64.36 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+..+++++|++|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999988754
No 387
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.69 E-value=4.9e-05 Score=64.72 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=16.8
Q ss_pred eEeecCCCCCCHhHHHHHHh
Q 040152 170 TILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~ 189 (293)
--+|+|+||+||||..+..+
T Consensus 4 gqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred ceEEEcCCCCCccchhhhHH
Confidence 46889999999999987653
No 388
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.68 E-value=0.00021 Score=64.97 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCccccc--------------CccceeeeeEEEEEec------------------
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQP--------------YAFTTKSLFVGHTDYK------------------ 213 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~--------------~~~tt~~~~~~~~~~~------------------ 213 (293)
+....+.++|..+.|||||+-+|........+ ..+.|.+...+.+.++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 45668999999999999999888754432111 1123344444443332
Q ss_pred -----CceEEEEeCCCCCCCCCCchhHHHHHHHHHh-hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEE
Q 040152 214 -----YLRYQVIDTPGILDRPFEDRNIIEMCSITAL-AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIV 287 (293)
Q Consensus 214 -----~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l-~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV 287 (293)
+.-+.++||.|+ + .+-..+++-+ -+..|-.++++-+.+..+....+.+-++-. ...|+|+|
T Consensus 195 vv~~aDklVsfVDtvGH------E--pwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a-----~~lPviVv 261 (527)
T COG5258 195 VVKRADKLVSFVDTVGH------E--PWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA-----MELPVIVV 261 (527)
T ss_pred hhhhcccEEEEEecCCc------c--HHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh-----hcCCEEEE
Confidence 234689999998 2 2223444433 333588999999988543333332222221 47899999
Q ss_pred EeccCC
Q 040152 288 CNKTDL 293 (293)
Q Consensus 288 ~NK~Dl 293 (293)
++|+|+
T Consensus 262 vTK~D~ 267 (527)
T COG5258 262 VTKIDM 267 (527)
T ss_pred EEeccc
Confidence 999996
No 389
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0018 Score=59.10 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=58.0
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhc------CCcc-cccC-------------ccceeeeeEEEEEe-------------
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITR------ADVD-VQPY-------------AFTTKSLFVGHTDY------------- 212 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~------~~~~-~~~~-------------~~tt~~~~~~~~~~------------- 212 (293)
..+-.|+++|-.|+||||.+..|.. .++. ++.- ...+.-+.++.+..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 3455899999999999999988752 1111 1100 01122222332211
Q ss_pred ---cCceEEEEeCCCCCCCCCCchhHHHH-HHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 040152 213 ---KYLRYQVIDTPGILDRPFEDRNIIEM-CSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSI 275 (293)
Q Consensus 213 ---~~~~~~iiDTpG~~~~~~~~~~~~e~-~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l 275 (293)
++..+.|+||.|..... .+.++. ..+.. .-.+|-++||+|++- +...+.|..-|++-
T Consensus 179 fKke~fdvIIvDTSGRh~qe---~sLfeEM~~v~~-ai~Pd~vi~VmDasi--GQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQE---ASLFEEMKQVSK-AIKPDEIIFVMDASI--GQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhh---HHHHHHHHHHHh-hcCCCeEEEEEeccc--cHhHHHHHHHHHHh
Confidence 24578999999975432 222221 12211 122699999999987 44555655555543
No 390
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.61 E-value=0.00042 Score=61.78 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=48.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC----ceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY----LRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~----~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
...+|+++|..++|||||+.+|-+.+- + .++...+..+-++.-++ .++.+|=.-|-.-+ .+.+. .++.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~-~--KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h----~~LLk-~al~ 122 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSET-V--KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYH----KGLLK-FALP 122 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccc-c--CCCCCcceEEEecccccchhhhhcceEEecCchhh----hhHHh-hccc
Confidence 356999999999999999999988762 2 22222222222222221 23555554453111 11111 2222
Q ss_pred HhhccCcEEEEEEeCCCCCCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGY 263 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~ 263 (293)
+-...-.+++++.|.++|++.
T Consensus 123 ats~aetlviltasms~Pw~~ 143 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTL 143 (473)
T ss_pred ccCccceEEEEEEecCCcHHH
Confidence 211112478999999998653
No 391
>PRK01889 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00013 Score=67.23 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=36.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccC-------ccceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPY-------AFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~-------~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
.+++++|.+|+|||||+|.|.+.... .... ..+|.......+. + ...++||||+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~--~-~~~l~DtpG~~~~~ 261 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP--S-GGLLIDTPGMRELQ 261 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec--C-CCeecCCCchhhhc
Confidence 37999999999999999999875432 1111 1233322222222 1 23688999996543
No 392
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.51 E-value=0.0013 Score=52.21 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=55.2
Q ss_pred eecCCCCCCHhHHHHHHhcC------CcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 172 LICGYPNVGKSSFMNKITRA------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 172 ~vvG~~~~GKSSlin~l~~~------~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
+..|..|+||||+.-.+... ....-+..+. ..... .++.++|||+..+. .... ..
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~-----~~~~~---yd~VIiD~p~~~~~----------~~~~-~l 64 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLG-----LANLD---YDYIIIDTGAGISD----------NVLD-FF 64 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC-----CCCCC---CCEEEEECCCCCCH----------HHHH-HH
Confidence 45678999999987666422 1111111110 00111 46899999986321 1112 23
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
..+|.++++++++... .......++.+.......++.+|+|+++
T Consensus 65 ~~aD~vviv~~~~~~s---~~~~~~~l~~l~~~~~~~~~~lVvN~~~ 108 (139)
T cd02038 65 LAADEVIVVTTPEPTS---ITDAYALIKKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred HhCCeEEEEcCCChhH---HHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3469999999987532 2221234445543334567889999975
No 393
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.48 E-value=0.00022 Score=59.18 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=18.8
Q ss_pred ceEeecCCCCCCHhHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~ 189 (293)
|.+++.|..|+|||||++.+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll 21 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLL 21 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 357899999999999999998
No 394
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00016 Score=61.93 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=62.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
.++|+++|.--+||||+-.-....-.. ..-+.-.|..+...++...-..+++||.||+.+.-...... ..+..
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~------e~iF~ 100 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDY------EMIFR 100 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCH------HHHHh
Confidence 367999999999999976544433211 11111112222222333233568999999998753222111 11333
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhh---ccCCCcEEEEEeccC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQA-ALFHSIKS---LFMNKPLIIVCNKTD 292 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~---~~~~~piivV~NK~D 292 (293)
...+++||+|+.+. ..+.+ ++...+.. ..++..+=+.+.|.|
T Consensus 101 ~~gALifvIDaQdd----y~eala~L~~~v~raykvNp~in~EVfiHKvD 146 (347)
T KOG3887|consen 101 GVGALIFVIDAQDD----YMEALARLHMTVERAYKVNPNINFEVFIHKVD 146 (347)
T ss_pred ccCeEEEEEechHH----HHHHHHHHHHHhhheeecCCCceEEEEEEecc
Confidence 45789999999762 11111 22222221 234666777788877
No 395
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.43 E-value=9.3e-05 Score=62.06 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCCC---CCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhc-cCCCcEEEEEe
Q 040152 215 LRYQVIDTPGILD---RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA-ALFHSIKSL-FMNKPLIIVCN 289 (293)
Q Consensus 215 ~~~~iiDTpG~~~---~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~-~~~~piivV~N 289 (293)
..+.++|+||+++ +.+.-++.++... .+. -.=+++|++|+.-- .+..+.+ -.+..+... .-..|-|-|++
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~--~~~-F~~c~Vylldsqf~--vD~~KfiSG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLK--QWN-FNVCVVYLLDSQFL--VDSTKFISGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHh--ccc-CceeEEEEeccchh--hhHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 3589999999987 3333333333221 111 12478888887431 1111111 011111111 13789999999
Q ss_pred ccCC
Q 040152 290 KTDL 293 (293)
Q Consensus 290 K~Dl 293 (293)
|+||
T Consensus 173 KMDL 176 (273)
T KOG1534|consen 173 KMDL 176 (273)
T ss_pred HHHH
Confidence 9996
No 396
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00092 Score=60.03 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=67.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC-------Cc---c------cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA-------DV---D------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~-------~~---~------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
..+|.-+|...-|||||..+++.- ++ . .....+.|.+...-.++-..+.+-=+|+||+.|
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD---- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD---- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH----
Confidence 358999999999999999988631 11 1 111234554443333333455688899999832
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++. ..+ .-...-|+.++|+.+++..-.+..+.+-+.+++ .-..+++.+||.|+
T Consensus 130 ---YIK-NMI-tGaaqMDGaILVVaatDG~MPQTrEHlLLArQV----GV~~ivvfiNKvD~ 182 (449)
T KOG0460|consen 130 ---YIK-NMI-TGAAQMDGAILVVAATDGPMPQTREHLLLARQV----GVKHIVVFINKVDL 182 (449)
T ss_pred ---HHH-Hhh-cCccccCceEEEEEcCCCCCcchHHHHHHHHHc----CCceEEEEEecccc
Confidence 221 111 112223899999999985444444433333333 23457888999995
No 397
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00047 Score=64.67 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=64.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccc-------cCc---------cceeeeeEEEE----------------EecC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQ-------PYA---------FTTKSLFVGHT----------------DYKY 214 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~-------~~~---------~tt~~~~~~~~----------------~~~~ 214 (293)
+.+++.++....-|||||..+|....--++ .+. +.|.-...-.. +.++
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 445888999999999999999864321111 111 11111110000 1113
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
.-+++||.||+.|++.+ +.+..+..|+.|+|+|.-+....+.+..+ -+.+.+ .+.-++|+||+|
T Consensus 98 FLiNLIDSPGHVDFSSE---------VTAALRVTDGALVVVDcv~GvCVQTETVL--rQA~~E---RIkPvlv~NK~D 161 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSE---------VTAALRVTDGALVVVDCVSGVCVQTETVL--RQAIAE---RIKPVLVMNKMD 161 (842)
T ss_pred eeEEeccCCCcccchhh---------hhheeEeccCcEEEEEccCceEechHHHH--HHHHHh---hccceEEeehhh
Confidence 34799999999887533 22333445999999998876555544322 222322 333467899998
No 398
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.33 E-value=0.00063 Score=61.72 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+..++.|.=|+|||||+|.+...
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~ 24 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLAN 24 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhc
Confidence 46789999999999999999754
No 399
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.30 E-value=0.0019 Score=46.92 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=43.4
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcE
Q 040152 171 ILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSA 250 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~ 250 (293)
+++.|..|+||||+...+...-.. ..+. +..++ ++.++|+||..+..... .......+|.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~-------v~~~~----d~iivD~~~~~~~~~~~--------~~~~~~~~~~ 61 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKR-------VLLID----DYVLIDTPPGLGLLVLL--------CLLALLAADL 61 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCe-------EEEEC----CEEEEeCCCCccchhhh--------hhhhhhhCCE
Confidence 678899999999999887643211 1110 11111 68999999985432100 0122334689
Q ss_pred EEEEEeCCCCC
Q 040152 251 VLFFLDISGSC 261 (293)
Q Consensus 251 il~v~D~s~~~ 261 (293)
++++++.+...
T Consensus 62 vi~v~~~~~~~ 72 (99)
T cd01983 62 VIIVTTPEALA 72 (99)
T ss_pred EEEecCCchhh
Confidence 99999887643
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.28 E-value=0.00069 Score=61.50 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+..++.|.-|+|||||+|.+...
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 457899999999999999999754
No 401
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.26 E-value=0.00067 Score=53.93 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=30.8
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.+.......+++... ..++|+++|+||+|+
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL 54 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADL 54 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhc
Confidence 36999999999987654433222344332 247899999999996
No 402
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.26 E-value=0.00098 Score=50.39 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=50.5
Q ss_pred ecCCCCCCHhHHHHHHhcC-------Cccc--ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 173 ICGYPNVGKSSFMNKITRA-------DVDV--QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 173 vvG~~~~GKSSlin~l~~~-------~~~~--~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
+-+..|+||||+...|... .+.. .+..+. .++.++|||+..+. .....
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~-------------~D~IIiDtpp~~~~----------~~~~~ 61 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG-------------DDYVVVDLGRSLDE----------VSLAA 61 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC-------------CCEEEEeCCCCcCH----------HHHHH
Confidence 3566899999987766432 1111 111111 16899999997421 11122
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-C-CCcEEEEEec
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-M-NKPLIIVCNK 290 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~-~~piivV~NK 290 (293)
...+|.++++++++..+-.... .+++.++... . ...+.+|+|+
T Consensus 62 -l~~aD~vlvvv~~~~~s~~~~~---~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 62 -LDQADRVFLVTQQDLPSIRNAK---RLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -HHHcCeEEEEecCChHHHHHHH---HHHHHHHHcCCCCcCceEEEecC
Confidence 2446999999988764322222 3343333322 2 3467788886
No 403
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00049 Score=62.41 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=68.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCccccc--------------CccceeeeeEEEEE---------ec-----------
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQP--------------YAFTTKSLFVGHTD---------YK----------- 213 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~--------------~~~tt~~~~~~~~~---------~~----------- 213 (293)
..+++++|...+|||||+--|+........ ..+.|..+...... |.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 358999999999999999888754332110 01112111111111 11
Q ss_pred -CceEEEEeCCCCCCCCCCchhHHHHHHHHHh-hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEecc
Q 040152 214 -YLRYQVIDTPGILDRPFEDRNIIEMCSITAL-AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKT 291 (293)
Q Consensus 214 -~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l-~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~ 291 (293)
..-+.++|.+|... +...++..+ .+.+|..++|+.+...+.....+.+-+...+ +.|+.++++|+
T Consensus 247 SSKlvTfiDLAGh~k--------Y~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-----~iPfFvlvtK~ 313 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAK--------YQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAAL-----NIPFFVLVTKM 313 (591)
T ss_pred hcceEEEeecccchh--------hheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHh-----CCCeEEEEEee
Confidence 12378999999732 111222112 2335888999999887777766654444443 78999999999
Q ss_pred CC
Q 040152 292 DL 293 (293)
Q Consensus 292 Dl 293 (293)
||
T Consensus 314 Dl 315 (591)
T KOG1143|consen 314 DL 315 (591)
T ss_pred cc
Confidence 96
No 404
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.23 E-value=0.0074 Score=53.88 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=63.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCC----------------C
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR----------------P 229 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~----------------~ 229 (293)
.++++++++|++|.|||++++++........+... ...++..+.+|.-.+. +
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC------------ccccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 36778999999999999999999987653222110 1135777777765431 1
Q ss_pred CCchhHHHHHHHHHhhccCcEEEEEEeCCCC-CCCCHHHHHHHHHHHhhcc--CCCcEEEEEec
Q 040152 230 FEDRNIIEMCSITALAHLRSAVLFFLDISGS-CGYSIAQQAALFHSIKSLF--MNKPLIIVCNK 290 (293)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~-~~~~~~~~~~~l~~l~~~~--~~~piivV~NK 290 (293)
-......+.+.+..+.. ..+=++++|=-+. ..-+..+|-..+..++.+. -+.|+|.|+++
T Consensus 127 ~~~~~~~~~~~~~llr~-~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRR-LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCHHHHHHHHHHHHHH-cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 11112223333333333 3566778886543 1122333434444444332 47899999875
No 405
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.22 E-value=0.0044 Score=51.13 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=40.5
Q ss_pred cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 213 KYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 213 ~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
...++.++||||.... .....+ ..+|.+++++.++... ......+++.++. .+.|+.+|+||+|
T Consensus 91 ~~~d~viiDtpp~~~~----------~~~~~l-~~aD~vliv~~~~~~~---~~~~~~~~~~l~~--~~~~~~vV~N~~~ 154 (179)
T cd03110 91 EGAELIIIDGPPGIGC----------PVIASL-TGADAALLVTEPTPSG---LHDLERAVELVRH--FGIPVGVVINKYD 154 (179)
T ss_pred cCCCEEEEECcCCCcH----------HHHHHH-HcCCEEEEEecCCccc---HHHHHHHHHHHHH--cCCCEEEEEeCCC
Confidence 3457999999976321 112222 4479999999988642 2222244444444 3578899999987
Q ss_pred C
Q 040152 293 L 293 (293)
Q Consensus 293 l 293 (293)
.
T Consensus 155 ~ 155 (179)
T cd03110 155 L 155 (179)
T ss_pred C
Confidence 3
No 406
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.11 E-value=0.0012 Score=54.39 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+.+.++|++|+|||||+.++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 457899999999999999999865
No 407
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.10 E-value=0.00061 Score=57.00 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVG 208 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~ 208 (293)
...-|+++|++|||||||+++|...... ....+.||+.+-.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~g 45 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPG 45 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCC
Confidence 3457999999999999999999876432 22345677765444
No 408
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.07 E-value=0.0012 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.+.++|++|+|||||+++|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 409
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00041 Score=57.31 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=29.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEE
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGH 209 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~ 209 (293)
.-+++.|++||||||++++|....-..-....||+.+-.|.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gE 45 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGE 45 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCC
Confidence 46899999999999999999877621222345666655543
No 410
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.95 E-value=0.00091 Score=53.05 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=32.1
Q ss_pred EeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeeeEEEEEecCceEEEEeCC
Q 040152 171 ILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTP 223 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~iiDTp 223 (293)
|+++|++|+|||||++.|...... ....+.+|+.+..+. .++..+.++|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~ 54 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKE 54 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHH
Confidence 689999999999999999875321 122334555444332 344556666543
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.0021 Score=55.08 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=26.8
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
+.+|.++.|+|+|-.. ....+. .+++.+...-+++.+|+||+|
T Consensus 154 ~~vD~vivVvDpS~~s-l~taer---i~~L~~elg~k~i~~V~NKv~ 196 (255)
T COG3640 154 EGVDLVIVVVDPSYKS-LRTAER---IKELAEELGIKRIFVVLNKVD 196 (255)
T ss_pred cCCCEEEEEeCCcHHH-HHHHHH---HHHHHHHhCCceEEEEEeecc
Confidence 4469999999998743 222222 222222111279999999987
No 412
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.91 E-value=0.001 Score=56.50 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
....|+++|++|||||||++.|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 44578899999999999999997543
No 413
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.90 E-value=0.0016 Score=56.90 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=34.9
Q ss_pred hhccCcEEEEEEeCCCCC-CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSC-GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~-~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...+|.+++|+|++++. ++...+ +|+..+.. .+.|+++|+||+||
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~--r~l~~~~~--~~i~~vIV~NK~DL 79 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLD--RFLVVAEA--QNIEPIIVLNKIDL 79 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHH--HHHHHHHH--CCCCEEEEEECccc
Confidence 445579999999999865 555544 56665544 57999999999997
No 414
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.88 E-value=0.0079 Score=44.88 Aligned_cols=71 Identities=21% Similarity=0.163 Sum_probs=38.8
Q ss_pred EeecC-CCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 171 ILICG-YPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 171 I~vvG-~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
|++.| ..|+||||+...+...-.. ...+..-.+ .+.. .++.++|+|+..+. ... .....+|
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-----~d~~-~d~viiD~p~~~~~----------~~~-~~l~~ad 63 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-----LDPQ-YDYIIIDTPPSLGL----------LTR-NALAAAD 63 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-----CCCC-CCEEEEeCcCCCCH----------HHH-HHHHHCC
Confidence 45666 5799999988766532110 110000000 0000 45899999997421 111 2233369
Q ss_pred EEEEEEeCCC
Q 040152 250 AVLFFLDISG 259 (293)
Q Consensus 250 ~il~v~D~s~ 259 (293)
.++++++.+.
T Consensus 64 ~viv~~~~~~ 73 (104)
T cd02042 64 LVLIPVQPSP 73 (104)
T ss_pred EEEEeccCCH
Confidence 9999998865
No 415
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0096 Score=58.53 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..+-++++|+||||||||.+++..
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHH
Confidence 346899999999999999999863
No 416
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.82 E-value=0.0046 Score=47.78 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=19.2
Q ss_pred EeecCCCCCCHhHHHHHHhcC
Q 040152 171 ILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~ 191 (293)
|++.|+||+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 417
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.82 E-value=0.003 Score=50.94 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=30.6
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+...+|++++|+|++++...... .+...+.. .++|+++|+||+|+
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~~~---~l~~~~~~--~~~p~iiv~NK~Dl 53 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRSR---KLERYVLE--LGKKLLIVLNKADL 53 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccCCH---HHHHHHHh--CCCcEEEEEEhHHh
Confidence 344457999999999876432222 22332322 36899999999996
No 418
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.81 E-value=0.00086 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.|+|.|.|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 419
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.79 E-value=0.0098 Score=48.69 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=36.1
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
++.|+||||..+. .....+ ..+|.++++++++..+- .....+++.+... ......+|+|++|
T Consensus 64 d~viiD~p~~~~~----------~~~~~l-~~ad~viiv~~~~~~s~---~~~~~~~~~~~~~-~~~~~~iv~N~~~ 125 (179)
T cd02036 64 DYILIDSPAGIER----------GFITAI-APADEALLVTTPEISSL---RDADRVKGLLEAL-GIKVVGVIVNRVR 125 (179)
T ss_pred CEEEEECCCCCcH----------HHHHHH-HhCCcEEEEeCCCcchH---HHHHHHHHHHHHc-CCceEEEEEeCCc
Confidence 6999999986321 112223 34689999998876432 2112334444332 2235678999876
No 420
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.75 E-value=0.0055 Score=54.05 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=43.1
Q ss_pred CCCCCceEeecCCCCCCHhHHHHHHhcCC--ccccc-CccceeeeeEEEEEe---cCceEEEEeCCCCCC
Q 040152 164 IDPNTRTILICGYPNVGKSSFMNKITRAD--VDVQP-YAFTTKSLFVGHTDY---KYLRYQVIDTPGILD 227 (293)
Q Consensus 164 ~~~~~~~I~vvG~~~~GKSSlin~l~~~~--~~~~~-~~~tt~~~~~~~~~~---~~~~~~iiDTpG~~~ 227 (293)
.+..-..|.|+|...+|||.|+|.|.+.. +...+ ...+|.++..-.... +...+.++||.|+.+
T Consensus 17 ~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 17 IDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp TTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 33345589999999999999999998743 33333 234566655433222 234689999999987
No 421
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.74 E-value=0.0035 Score=52.32 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=31.0
Q ss_pred HHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 240 SITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 240 ~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+..+.+.+|++++|+|++++...... .+ .....+.|+++|+||+|+
T Consensus 27 ~l~~~~~~ad~il~VvD~~~~~~~~~~---~l----~~~~~~~~~ilV~NK~Dl 73 (190)
T cd01855 27 LLSSISPKKALVVHVVDIFDFPGSLIP---RL----RLFGGNNPVILVGNKIDL 73 (190)
T ss_pred HHHhcccCCcEEEEEEECccCCCccch---hH----HHhcCCCcEEEEEEchhc
Confidence 344455667999999999885422211 11 111246899999999996
No 422
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.73 E-value=0.0015 Score=65.86 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=42.4
Q ss_pred cCCCCCCHhHHHHHHhcCCccccc---CccceeeeeEEEEEec---CceEEEEeCCCCCCC
Q 040152 174 CGYPNVGKSSFMNKITRADVDVQP---YAFTTKSLFVGHTDYK---YLRYQVIDTPGILDR 228 (293)
Q Consensus 174 vG~~~~GKSSlin~l~~~~~~~~~---~~~tt~~~~~~~~~~~---~~~~~iiDTpG~~~~ 228 (293)
+|+-++|||||+|.|+|..+.+.+ ...||+++........ ...+.++|+-|....
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~ 61 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGR 61 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCch
Confidence 499999999999999999998654 3468888766555442 346889999987543
No 423
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.70 E-value=0.016 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=21.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999998654
No 424
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.69 E-value=0.0021 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
...|+++|++|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4479999999999999999998753
No 425
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.68 E-value=0.0021 Score=53.02 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.|+++|++|+|||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999998754
No 426
>PRK08118 topology modulation protein; Reviewed
Probab=96.67 E-value=0.0014 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+|+|+|++|+|||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 427
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0013 Score=56.87 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADV 193 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~ 193 (293)
-|+++|++|||||||+|.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987543
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.63 E-value=0.0022 Score=43.45 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.4
Q ss_pred eEeecCCCCCCHhHHHHHHh
Q 040152 170 TILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~ 189 (293)
..++.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999875
No 429
>PF05729 NACHT: NACHT domain
Probab=96.59 E-value=0.0083 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=19.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++|.|.+|+||||++..++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999988753
No 430
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.59 E-value=0.004 Score=59.38 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=47.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC----ceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY----LRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~----~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
....|+|+|..++|||||+.+|.+.+- +.++...+.....+.-++ .++.+|=..|-..+ .+-+ ...+.
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~----~~LL-k~~lt 95 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSH----SDLL-KFALT 95 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcch----HhHh-cccCC
Confidence 456899999999999999999976532 222223333332222111 23556655442111 1111 11111
Q ss_pred --HhhccCcEEEEEEeCCCCCCC
Q 040152 243 --ALAHLRSAVLFFLDISGSCGY 263 (293)
Q Consensus 243 --~l~~~~d~il~v~D~s~~~~~ 263 (293)
.+.+ -+|++|+|.+.|+..
T Consensus 96 ~~~l~~--t~vvIvlDlS~PW~~ 116 (472)
T PF05783_consen 96 PENLPN--TLVVIVLDLSKPWNI 116 (472)
T ss_pred cccccc--eEEEEEecCCChHHH
Confidence 1221 379999999998643
No 431
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.57 E-value=0.0027 Score=60.32 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccc----cCccceeeeeEEEEEecCceEEEEeCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQ----PYAFTTKSLFVGHTDYKYLRYQVIDTPGILD 227 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~----~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~ 227 (293)
..-.|.|+|+..+|||||+|.|.|.++.+. ....||+++...++.--...+.++|.-|-.-
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDG 100 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDG 100 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccCCc
Confidence 445899999999999999999999998633 3456888877665443223478899888643
No 432
>PRK07261 topology modulation protein; Provisional
Probab=96.57 E-value=0.0016 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=19.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998743
No 433
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.48 E-value=0.004 Score=61.72 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeee-----------------------E----------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLF-----------------------V---------------- 207 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~-----------------------~---------------- 207 (293)
..|.|+++|..++||||.++.+.|..+.+-...-.|+-+. .
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et 107 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSET 107 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhhH
Confidence 5678999999999999999999986654222111111100 0
Q ss_pred -----------------EEEEecCceEEEEeCCCCCCCCCCc-hhHHHHH---HHHHhhccCcEEEEEEeCCCCCCCCHH
Q 040152 208 -----------------GHTDYKYLRYQVIDTPGILDRPFED-RNIIEMC---SITALAHLRSAVLFFLDISGSCGYSIA 266 (293)
Q Consensus 208 -----------------~~~~~~~~~~~iiDTpG~~~~~~~~-~~~~e~~---~~~~l~~~~d~il~v~D~s~~~~~~~~ 266 (293)
.....+-..+.++|.||+...+..+ ...++.+ .+..+....+++++.+.+.+..-.+ .
T Consensus 108 ~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~at-s 186 (657)
T KOG0446|consen 108 DRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIAT-S 186 (657)
T ss_pred HHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhc-C
Confidence 0000011246899999997754332 1222222 2234444457788877776632222 2
Q ss_pred HHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 267 QQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 267 ~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.+++.+++.+ .+...+.|++|.|+
T Consensus 187 ~alkiarevDp--~g~RTigvitK~Dl 211 (657)
T KOG0446|consen 187 PALVVAREVDP--GGSRTLEVITKFDF 211 (657)
T ss_pred HHHHHHHhhCC--CccchhHHhhhHHh
Confidence 22345555544 35567777777774
No 434
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0021 Score=53.42 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=20.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+|+|+|+|||||||+...|+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 435
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.48 E-value=0.0018 Score=51.08 Aligned_cols=21 Identities=33% Similarity=0.879 Sum_probs=18.9
Q ss_pred EeecCCCCCCHhHHHHHHhcC
Q 040152 171 ILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~ 191 (293)
|+++|.||+||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
No 436
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.46 E-value=0.0061 Score=50.07 Aligned_cols=42 Identities=33% Similarity=0.243 Sum_probs=28.9
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++...... .++..+ .++|.++|+||+|+
T Consensus 17 i~~aD~il~v~D~~~~~~~~~~---~i~~~~----~~k~~ilVlNK~Dl 58 (171)
T cd01856 17 LKLVDLVIEVRDARIPLSSRNP---LLEKIL----GNKPRIIVLNKADL 58 (171)
T ss_pred HhhCCEEEEEeeccCccCcCCh---hhHhHh----cCCCEEEEEehhhc
Confidence 3446999999999876543222 223322 35799999999996
No 437
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.44 E-value=0.0021 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADV 193 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~ 193 (293)
-++++|++|+|||||+|.+.+-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 699999999999999999976543
No 438
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.44 E-value=0.0021 Score=50.43 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV 193 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~ 193 (293)
-.++|+|.+|+|||||++.+++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 3799999999999999999998754
No 439
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.43 E-value=0.0038 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=16.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....++|.|.+|+|||+|++.+.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999875
No 440
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.42 E-value=0.0076 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
-|+++|++|+||||+++++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 441
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.41 E-value=0.0074 Score=56.42 Aligned_cols=85 Identities=25% Similarity=0.341 Sum_probs=56.4
Q ss_pred cceeeeeEEEEEe-cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCC-------CC-HHHHHH
Q 040152 200 FTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCG-------YS-IAQQAA 270 (293)
Q Consensus 200 ~tt~~~~~~~~~~-~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~-------~~-~~~~~~ 270 (293)
..|.++....+.+ ++..+.++|+.|+.. ++. .+..+....++|+||++.++-.- .+ ..+.+.
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~----eRk-----KW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~ 290 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRS----ERK-----KWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLN 290 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGG----GGG-----GGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHH
T ss_pred CCCCCeeEEEEEeecccccceecCCCCch----hhh-----hHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHH
Confidence 3466777777788 888999999999821 221 12223445689999999876321 11 334467
Q ss_pred HHHHHhhc--cCCCcEEEEEeccCC
Q 040152 271 LFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 271 ~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+++++... +.+.|+|+++||.|+
T Consensus 291 lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 291 LFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp HHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred HHHHHHhCcccccCceEEeeecHHH
Confidence 78887764 578999999999985
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.37 E-value=0.0027 Score=43.96 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=19.1
Q ss_pred EeecCCCCCCHhHHHHHHhcC
Q 040152 171 ILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~ 191 (293)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998865
No 443
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0037 Score=55.44 Aligned_cols=65 Identities=29% Similarity=0.414 Sum_probs=38.6
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHH-HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ-AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~-~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+.++|+||+ +.+ +.++..-+..-|+.++++...++|....... +... ++.. -+.++++-||+||
T Consensus 126 HVSfVDCPGH--------DiL-MaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM~---LkhiiilQNKiDl 191 (466)
T KOG0466|consen 126 HVSFVDCPGH--------DIL-MATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIMK---LKHIIILQNKIDL 191 (466)
T ss_pred EEEeccCCch--------HHH-HHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHhh---hceEEEEechhhh
Confidence 4789999997 222 2222111222388899998888776543332 1112 2222 3678999999996
No 444
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.36 E-value=0.0093 Score=53.05 Aligned_cols=42 Identities=31% Similarity=0.237 Sum_probs=29.4
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|+|++|+|+..+.+..... +.+.+ .++|+++|+||+|+
T Consensus 19 l~~aDvVl~V~Dar~p~~~~~~~---i~~~l----~~kp~IiVlNK~DL 60 (276)
T TIGR03596 19 LKLVDVVIEVLDARIPLSSRNPM---IDEIR----GNKPRLIVLNKADL 60 (276)
T ss_pred HhhCCEEEEEEeCCCCCCCCChh---HHHHH----CCCCEEEEEEcccc
Confidence 34579999999998765433221 22222 36899999999996
No 445
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.34 E-value=0.0044 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|++.|++|+|||||++.|.+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999988753
No 446
>PHA02518 ParA-like protein; Provisional
Probab=96.26 E-value=0.032 Score=46.97 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTD 292 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~D 292 (293)
.++.|+||||..+ . ....++ ..+|.+|.+++++..+-.......++++++.....+.| ..++.|+.+
T Consensus 77 ~d~viiD~p~~~~-------~---~~~~~l-~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 77 YDYVVVDGAPQDS-------E---LARAAL-RIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAI 144 (211)
T ss_pred CCEEEEeCCCCcc-------H---HHHHHH-HHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccC
Confidence 4789999999631 1 112222 34699999998876432223333344555433223444 346667653
No 447
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.26 E-value=0.0034 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhc
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+....|+++|++|+|||||++.|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
No 448
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.25 E-value=0.0037 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV 193 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~ 193 (293)
-.++|+|++|+|||||+|-+.|-..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3799999999999999999987543
No 449
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.096 Score=50.24 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCCC-CCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHH
Q 040152 41 TRLRQFYMRKVKYTQQNFFEKLSTI--IDEFPRLD-DIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIA 110 (293)
Q Consensus 41 ~ri~~~~~~~~~~~~~~~~~~l~~~--~~~~p~~~-~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~ 110 (293)
.|+|..+.+.-+.+...+.+.|.++ ++.|-.=+ +..-|+..+.+.-...-+|...++-++-.++.+-...
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~ 272 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVA 272 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHH
Confidence 3556555555566666666666654 33332211 2333444555554444466777777777777666444
No 450
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.23 E-value=0.007 Score=55.14 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..+|+++|...+|||||+--|+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeec
Confidence 468999999999999998777543
No 451
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.22 E-value=0.0063 Score=54.48 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=33.8
Q ss_pred hhccCcEEEEEEeCCCCC-CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSC-GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~-~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...+|.+++|+|+.++. ++...+ +|+..+.. .++|+++|+||+||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ld--r~L~~~~~--~~ip~iIVlNK~DL 121 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLD--RYLVAAEA--AGIEPVIVLTKADL 121 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHH--HHHHHHHH--cCCCEEEEEEHHHC
Confidence 345579999999999876 433333 45655544 47899999999997
No 452
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.21 E-value=0.021 Score=52.69 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhc
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.....+++++|+.++|||||..-|++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 34567999999999999999877653
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.18 E-value=0.0046 Score=47.58 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=21.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV 193 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~ 193 (293)
..++++|++|+||||++..++..-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4799999999999999999986644
No 454
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.18 E-value=0.014 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
..+|+|+|.+|+|||||+++|...-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 3489999999999999999998653
No 455
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.17 E-value=0.004 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||+.++-+-+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 379999999999999999987654
No 456
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.16 E-value=0.0023 Score=53.19 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=25.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeee
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLF 206 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~ 206 (293)
+-|+++|++|+|||||.++|...... ....+.||+.+.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r 42 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPR 42 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCc
Confidence 46899999999999999999864321 223334555433
No 457
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.16 E-value=0.0028 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=18.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
+|+|+|.+++|||||++.|....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g 23 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARG 23 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHcC
Confidence 58999999999999999997653
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.14 E-value=0.0037 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.0
Q ss_pred EeecCCCCCCHhHHHHHHhcC
Q 040152 171 ILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~ 191 (293)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 459
>PRK06217 hypothetical protein; Validated
Probab=96.13 E-value=0.0043 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+|+|+|.+|+||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 460
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.12 E-value=0.0042 Score=51.79 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999765
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.11 E-value=0.0039 Score=51.48 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 462
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.11 E-value=0.022 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..++++++|++++||||+...|++
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHH
Confidence 578999999999999999988864
No 463
>PRK00098 GTPase RsgA; Reviewed
Probab=96.10 E-value=0.0098 Score=53.53 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=32.9
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++...... .-+|+..+.. .+.|+++|+||+||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~-idr~L~~~~~--~~ip~iIVlNK~DL 123 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDL-LDRFLVLAEA--NGIKPIIVLNKIDL 123 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHH-HHHHHHHHHH--CCCCEEEEEEhHHc
Confidence 4556999999999886543322 1145555544 57899999999997
No 464
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.08 E-value=0.0051 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+|.|.+|+|||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999998753
No 465
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.07 E-value=0.028 Score=45.89 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=37.5
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhh-ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEecc
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALA-HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKT 291 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~-~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~ 291 (293)
+.++.|+|||+..+. .....+. ..+|.+++|..++.. +.....++++.+... +.+ .-+|+|+.
T Consensus 67 ~yD~VIiD~pp~~~~----------~~~~~~~~~~ad~viiV~~p~~~---s~~~~~~~~~~l~~~--~~~~~gvv~N~~ 131 (169)
T cd02037 67 ELDYLVIDMPPGTGD----------EHLTLAQSLPIDGAVIVTTPQEV---ALDDVRKAIDMFKKV--NIPILGVVENMS 131 (169)
T ss_pred CCCEEEEeCCCCCcH----------HHHHHHhccCCCeEEEEECCchh---hHHHHHHHHHHHHhc--CCCeEEEEEcCC
Confidence 457899999997421 1111221 346899999887652 233333455555553 344 45788987
Q ss_pred C
Q 040152 292 D 292 (293)
Q Consensus 292 D 292 (293)
+
T Consensus 132 ~ 132 (169)
T cd02037 132 Y 132 (169)
T ss_pred c
Confidence 5
No 466
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.06 E-value=0.0051 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.1
Q ss_pred CceEeecCCCCCCHhHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~ 189 (293)
.+.|+++|.|||||||+.+.|.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 467
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.04 E-value=0.038 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.+.-++.|+-|+|||||+|.+...
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred ccceEEEEecccCChHHHHHHHHcc
Confidence 4556788999999999999998743
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.04 E-value=0.0051 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
..++++|++|+|||||++++++.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999998753
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.0044 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.6
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-++++|++|||||||++.+.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 470
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.03 E-value=0.0045 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.|.|+|+.|+|||||+..|.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
No 471
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0048 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.637 Sum_probs=21.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..++|+|.|.||+|||||..+++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 457999999999999999999974
No 472
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.00 E-value=0.034 Score=43.84 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|++.|..|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 473
>PRK08233 hypothetical protein; Provisional
Probab=95.99 E-value=0.0054 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|+|.|.+|+|||||.++|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999754
No 474
>PRK14530 adenylate kinase; Provisional
Probab=95.99 E-value=0.0054 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
++|+++|+||+||||+.+.|+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 475
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.96 E-value=0.0061 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV 193 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~ 193 (293)
-.++++|++|+|||||++.++|...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3799999999999999999998643
No 476
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.95 E-value=0.05 Score=47.94 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.1
Q ss_pred eEeecCCCCCCHhHHHHHH
Q 040152 170 TILICGYPNVGKSSFMNKI 188 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l 188 (293)
.|++.|..||||||+...|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5888899999999977665
No 477
>PRK03839 putative kinase; Provisional
Probab=95.95 E-value=0.0054 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.|+++|.||+||||+...|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999988643
No 478
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.91 E-value=0.022 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..+|+++|.+|+|||||+++|.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999865
No 479
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0061 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.88 E-value=0.0055 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.9
Q ss_pred EeecCCCCCCHhHHHHHHhcC
Q 040152 171 ILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~ 191 (293)
|+++|++|+|||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998654
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.88 E-value=0.0072 Score=51.55 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 482
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.88 E-value=0.015 Score=52.11 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=29.3
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|+||+|+|+..+.+.... .+.+.. .++|+++|+||+||
T Consensus 22 l~~aDvIL~VvDar~p~~~~~~----~l~~~~---~~kp~iiVlNK~DL 63 (287)
T PRK09563 22 LKLVDVVIEVLDARIPLSSENP----MIDKII---GNKPRLLILNKSDL 63 (287)
T ss_pred hhhCCEEEEEEECCCCCCCCCh----hHHHHh---CCCCEEEEEEchhc
Confidence 3446999999999886553322 122222 26899999999996
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.87 E-value=0.0072 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 484
>PRK13949 shikimate kinase; Provisional
Probab=95.87 E-value=0.0065 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=20.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+|+++|++|+||||+...|+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988743
No 485
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.87 E-value=0.0073 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 486
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.85 E-value=0.0066 Score=50.68 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998864
No 487
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.83 E-value=0.0076 Score=52.80 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.--++++|+.|||||||++++.+-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346899999999999999999873
No 488
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.83 E-value=0.0067 Score=51.29 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 489
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0067 Score=51.86 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
No 490
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.0064 Score=51.62 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=21.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
No 491
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.81 E-value=0.0069 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.+.|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999864
No 492
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.81 E-value=0.0099 Score=54.98 Aligned_cols=46 Identities=26% Similarity=0.475 Sum_probs=31.2
Q ss_pred HHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 241 ~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+..+...++++++|+|+.+..+. |..++.....+.|+++|+||+||
T Consensus 57 l~~~~~~~~~Il~VvD~~d~~~s-------~~~~l~~~~~~~piilV~NK~DL 102 (360)
T TIGR03597 57 LNSLGDSNALIVYVVDIFDFEGS-------LIPELKRFVGGNPVLLVGNKIDL 102 (360)
T ss_pred HhhcccCCcEEEEEEECcCCCCC-------ccHHHHHHhCCCCEEEEEEchhh
Confidence 34555667899999999875321 22233222246899999999996
No 493
>PRK12289 GTPase RsgA; Reviewed
Probab=95.79 E-value=0.024 Score=52.26 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=30.8
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|.+++|+|+.++. ++....-+++..... .+.|+++|+||+||
T Consensus 88 aNvD~vLlV~d~~~p~-~~~~~LdR~L~~a~~--~~ip~ILVlNK~DL 132 (352)
T PRK12289 88 ANADQILLVFALAEPP-LDPWQLSRFLVKAES--TGLEIVLCLNKADL 132 (352)
T ss_pred hcCCEEEEEEECCCCC-CCHHHHHHHHHHHHH--CCCCEEEEEEchhc
Confidence 3469999999998764 232211144544433 57999999999997
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.79 E-value=0.007 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.1
Q ss_pred ceEeecCCCCCCHhHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~ 189 (293)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 368999999999999999986
No 495
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.78 E-value=0.0072 Score=51.40 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 496
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.0075 Score=51.16 Aligned_cols=24 Identities=17% Similarity=0.139 Sum_probs=21.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 497
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.76 E-value=0.0077 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
..+|+|+|.+|+|||||+++|++.-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4489999999999999999998753
No 498
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.75 E-value=0.013 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|+++|.+|+||||+++++...
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCccccchHHHHHhhh
Confidence 348999999999999999999864
No 499
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.75 E-value=0.0089 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 500
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.0075 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999864
Done!