Query 040152
Match_columns 293
No_of_seqs 433 out of 2631
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e87_A Hypothetical protein PH 100.0 2.8E-48 9.4E-53 356.2 33.3 292 2-293 1-292 (357)
2 2qu8_A Putative nucleolar GTP- 99.9 3.3E-23 1.1E-27 177.5 16.2 140 154-293 15-154 (228)
3 2qtf_A Protein HFLX, GTP-bindi 99.9 5.3E-22 1.8E-26 181.7 14.7 227 51-293 66-304 (364)
4 2gj8_A MNME, tRNA modification 99.8 1.4E-19 4.9E-24 148.2 13.8 122 168-293 4-127 (172)
5 1wf3_A GTP-binding protein; GT 99.8 8.1E-19 2.8E-23 156.7 14.6 122 168-293 7-129 (301)
6 3iby_A Ferrous iron transport 99.8 7E-19 2.4E-23 153.6 12.9 118 169-293 2-122 (256)
7 3tw8_B RAS-related protein RAB 99.8 3.6E-19 1.2E-23 145.5 10.1 116 167-293 8-125 (181)
8 3iev_A GTP-binding protein ERA 99.8 9.8E-19 3.3E-23 156.7 13.6 124 166-293 8-134 (308)
9 2wji_A Ferrous iron transport 99.8 2E-18 6.8E-23 140.1 13.8 116 168-293 3-120 (165)
10 1mky_A Probable GTP-binding pr 99.8 1.2E-18 4.1E-23 163.5 13.3 119 169-293 2-122 (439)
11 3gee_A MNME, tRNA modification 99.8 1.2E-18 4E-23 164.6 12.7 118 168-293 233-355 (476)
12 2dyk_A GTP-binding protein; GT 99.8 2.6E-18 9E-23 137.8 12.5 118 169-293 2-120 (161)
13 3i8s_A Ferrous iron transport 99.8 1.3E-18 4.6E-23 153.3 11.5 119 168-293 3-124 (274)
14 1xzp_A Probable tRNA modificat 99.8 2.9E-18 9.9E-23 162.1 13.6 117 168-293 243-362 (482)
15 3a1s_A Iron(II) transport prot 99.8 3.9E-18 1.3E-22 149.0 13.4 117 168-293 5-122 (258)
16 3def_A T7I23.11 protein; chlor 99.8 5E-18 1.7E-22 148.6 13.2 124 167-293 35-163 (262)
17 4a9a_A Ribosome-interacting GT 99.8 1.3E-18 4.5E-23 159.1 9.8 120 167-293 71-194 (376)
18 2lkc_A Translation initiation 99.8 5.4E-18 1.8E-22 138.4 12.3 115 165-293 5-119 (178)
19 1h65_A Chloroplast outer envel 99.8 5.6E-18 1.9E-22 148.8 13.2 123 167-293 38-166 (270)
20 1z06_A RAS-related protein RAB 99.8 2.6E-18 8.8E-23 142.2 10.4 117 167-293 19-139 (189)
21 3lxx_A GTPase IMAP family memb 99.8 5.9E-18 2E-22 145.9 13.0 123 167-293 28-157 (239)
22 3cbq_A GTP-binding protein REM 99.8 1.3E-18 4.5E-23 145.4 8.5 118 166-293 21-142 (195)
23 3q85_A GTP-binding protein REM 99.8 1.6E-18 5.5E-23 140.3 8.7 116 168-293 2-121 (169)
24 3r7w_A Gtpase1, GTP-binding pr 99.8 4.4E-18 1.5E-22 152.4 11.9 122 168-293 3-127 (307)
25 3lxw_A GTPase IMAP family memb 99.7 3.9E-18 1.3E-22 148.1 10.9 122 167-293 20-151 (247)
26 2bme_A RAB4A, RAS-related prot 99.7 3.4E-18 1.2E-22 140.7 9.8 116 167-293 9-127 (186)
27 1zj6_A ADP-ribosylation factor 99.7 5.1E-18 1.7E-22 140.2 10.9 113 167-293 15-129 (187)
28 3tkl_A RAS-related protein RAB 99.7 2.9E-18 9.8E-23 142.3 9.4 116 167-293 15-133 (196)
29 3b1v_A Ferrous iron uptake tra 99.7 7.7E-18 2.6E-22 148.2 12.4 116 168-293 3-119 (272)
30 1z2a_A RAS-related protein RAB 99.7 3.5E-18 1.2E-22 137.9 9.4 116 167-293 4-121 (168)
31 2h17_A ADP-ribosylation factor 99.7 4.6E-18 1.6E-22 139.8 9.9 114 166-293 19-134 (181)
32 1wms_A RAB-9, RAB9, RAS-relate 99.7 6.9E-18 2.4E-22 137.6 10.6 116 167-293 6-128 (177)
33 2il1_A RAB12; G-protein, GDP, 99.7 3.9E-18 1.3E-22 141.8 9.3 118 165-293 23-143 (192)
34 1u8z_A RAS-related protein RAL 99.7 5.8E-18 2E-22 136.3 10.0 114 168-293 4-121 (168)
35 2wjg_A FEOB, ferrous iron tran 99.7 2E-17 6.9E-22 136.4 13.5 117 167-293 6-124 (188)
36 1g16_A RAS-related protein SEC 99.7 3.2E-18 1.1E-22 138.4 8.4 115 168-293 3-120 (170)
37 1ksh_A ARF-like protein 2; sma 99.7 9.4E-18 3.2E-22 138.3 11.2 113 167-293 17-131 (186)
38 3k53_A Ferrous iron transport 99.7 1.8E-17 6E-22 145.7 13.5 117 168-293 3-121 (271)
39 4bas_A ADP-ribosylation factor 99.7 4.7E-18 1.6E-22 141.3 9.3 116 166-293 15-139 (199)
40 3cph_A RAS-related protein SEC 99.7 5.8E-18 2E-22 142.4 10.0 116 167-293 19-137 (213)
41 4dhe_A Probable GTP-binding pr 99.7 1.6E-17 5.5E-22 140.9 12.8 122 167-293 28-156 (223)
42 2iwr_A Centaurin gamma 1; ANK 99.7 7.6E-18 2.6E-22 137.7 10.4 111 167-293 6-120 (178)
43 2bov_A RAla, RAS-related prote 99.7 1.1E-17 3.8E-22 139.8 11.6 115 167-293 13-131 (206)
44 2hxs_A RAB-26, RAS-related pro 99.7 2.2E-18 7.4E-23 140.7 7.1 116 167-293 5-127 (178)
45 1upt_A ARL1, ADP-ribosylation 99.7 9.6E-18 3.3E-22 135.8 10.8 113 167-293 6-120 (171)
46 2bcg_Y Protein YP2, GTP-bindin 99.7 1.1E-17 3.8E-22 140.3 11.3 116 167-293 7-125 (206)
47 1ky3_A GTP-binding protein YPT 99.7 3.5E-18 1.2E-22 139.7 8.0 116 167-293 7-130 (182)
48 1zd9_A ADP-ribosylation factor 99.7 1.5E-17 5.1E-22 137.7 11.9 114 167-293 21-136 (188)
49 1fzq_A ADP-ribosylation factor 99.7 1.9E-17 6.4E-22 136.5 12.2 114 166-293 14-129 (181)
50 1z0f_A RAB14, member RAS oncog 99.7 9.5E-18 3.3E-22 136.7 10.3 116 167-293 14-132 (179)
51 1r8s_A ADP-ribosylation factor 99.7 1.7E-17 5.7E-22 133.6 11.6 110 170-293 2-113 (164)
52 4dkx_A RAS-related protein RAB 99.7 5.8E-18 2E-22 144.1 9.3 116 167-293 12-130 (216)
53 2g6b_A RAS-related protein RAB 99.7 8.2E-18 2.8E-22 137.5 9.8 116 167-293 9-128 (180)
54 1ek0_A Protein (GTP-binding pr 99.7 8.6E-18 3E-22 135.7 9.8 115 168-293 3-120 (170)
55 2nzj_A GTP-binding protein REM 99.7 6.5E-18 2.2E-22 137.4 9.1 116 168-293 4-123 (175)
56 2fu5_C RAS-related protein RAB 99.7 2.2E-18 7.5E-23 141.6 6.3 116 167-293 7-125 (183)
57 3clv_A RAB5 protein, putative; 99.7 9.5E-18 3.3E-22 139.4 10.2 114 167-292 6-158 (208)
58 1kao_A RAP2A; GTP-binding prot 99.7 1.4E-17 4.8E-22 133.9 10.8 114 168-293 3-120 (167)
59 3geh_A MNME, tRNA modification 99.7 7.1E-18 2.4E-22 158.7 10.3 115 168-293 224-342 (462)
60 2q3h_A RAS homolog gene family 99.7 1.2E-17 4.2E-22 139.4 10.6 117 166-293 18-136 (201)
61 1z08_A RAS-related protein RAB 99.7 4.3E-18 1.5E-22 137.8 7.5 116 167-293 5-123 (170)
62 2hjg_A GTP-binding protein ENG 99.7 3E-18 1E-22 160.6 7.6 122 166-293 173-298 (436)
63 2fn4_A P23, RAS-related protei 99.7 2.3E-17 7.9E-22 134.7 11.9 116 166-293 7-126 (181)
64 2hup_A RAS-related protein RAB 99.7 9.8E-18 3.4E-22 140.5 9.8 116 167-293 28-146 (201)
65 3t5g_A GTP-binding protein RHE 99.7 2.1E-17 7E-22 135.5 11.5 115 167-293 5-123 (181)
66 2a9k_A RAS-related protein RAL 99.7 1.4E-17 4.7E-22 136.7 10.5 115 167-293 17-135 (187)
67 1svi_A GTP-binding protein YSX 99.7 3.7E-17 1.3E-21 135.6 13.1 119 167-293 22-146 (195)
68 2hjg_A GTP-binding protein ENG 99.7 7.5E-18 2.6E-22 157.9 9.9 119 169-293 4-123 (436)
69 1f6b_A SAR1; gtpases, N-termin 99.7 1.4E-17 4.9E-22 139.3 10.7 113 167-293 24-138 (198)
70 1m2o_B GTP-binding protein SAR 99.7 2.4E-17 8.1E-22 137.0 11.7 113 167-293 22-136 (190)
71 1c1y_A RAS-related protein RAP 99.7 1.6E-17 5.4E-22 133.9 10.3 114 168-293 3-120 (167)
72 4dsu_A GTPase KRAS, isoform 2B 99.7 2.5E-17 8.5E-22 135.6 11.6 115 167-293 3-121 (189)
73 2atx_A Small GTP binding prote 99.7 1.6E-17 5.4E-22 137.9 10.5 116 167-293 17-134 (194)
74 2gf9_A RAS-related protein RAB 99.7 2.5E-17 8.4E-22 136.3 11.5 116 167-293 21-139 (189)
75 2y8e_A RAB-protein 6, GH09086P 99.7 5.4E-18 1.8E-22 138.2 7.4 115 168-293 14-131 (179)
76 2h57_A ADP-ribosylation factor 99.7 8.3E-18 2.8E-22 139.3 8.6 115 167-293 20-138 (190)
77 3bc1_A RAS-related protein RAB 99.7 1.9E-17 6.5E-22 136.6 10.7 116 167-293 10-139 (195)
78 1lnz_A SPO0B-associated GTP-bi 99.7 2.4E-18 8E-23 156.1 5.7 123 169-293 159-286 (342)
79 1moz_A ARL1, ADP-ribosylation 99.7 1.1E-17 3.8E-22 137.2 9.2 113 167-293 17-131 (183)
80 1vg8_A RAS-related protein RAB 99.7 8.9E-18 3.1E-22 140.6 8.7 116 167-293 7-129 (207)
81 2a5j_A RAS-related protein RAB 99.7 1.5E-17 5E-22 138.0 9.6 116 167-293 20-138 (191)
82 1zbd_A Rabphilin-3A; G protein 99.7 2.8E-17 9.5E-22 137.4 11.2 116 167-293 7-125 (203)
83 2p5s_A RAS and EF-hand domain 99.7 1.8E-17 6.2E-22 138.4 10.0 116 167-293 27-145 (199)
84 1z0j_A RAB-22, RAS-related pro 99.7 1.9E-17 6.7E-22 133.7 9.9 115 168-293 6-123 (170)
85 3c5c_A RAS-like protein 12; GD 99.7 2.5E-17 8.4E-22 136.5 10.6 114 167-293 20-139 (187)
86 2b6h_A ADP-ribosylation factor 99.7 2.1E-17 7.3E-22 137.5 10.3 113 167-293 28-142 (192)
87 2ew1_A RAS-related protein RAB 99.7 1.4E-17 4.7E-22 140.0 9.0 116 167-293 25-143 (201)
88 2efe_B Small GTP-binding prote 99.7 1.9E-17 6.6E-22 135.4 9.6 116 167-293 11-129 (181)
89 3reg_A RHO-like small GTPase; 99.7 1.6E-17 5.5E-22 138.0 9.1 116 167-293 22-139 (194)
90 3cpj_B GTP-binding protein YPT 99.7 1.9E-17 6.5E-22 141.0 9.8 116 167-293 12-130 (223)
91 4gzl_A RAS-related C3 botulinu 99.7 1.2E-17 3.9E-22 140.4 8.2 116 167-293 29-146 (204)
92 3pqc_A Probable GTP-binding pr 99.7 1E-16 3.6E-21 132.4 13.8 120 166-293 21-145 (195)
93 1x3s_A RAS-related protein RAB 99.7 2.7E-17 9.1E-22 136.2 10.1 115 168-293 15-133 (195)
94 2ce2_X GTPase HRAS; signaling 99.7 5E-17 1.7E-21 130.3 11.4 114 168-293 3-120 (166)
95 1r2q_A RAS-related protein RAB 99.7 2.3E-17 8E-22 133.1 9.3 115 168-293 6-123 (170)
96 3kkq_A RAS-related protein M-R 99.7 5E-17 1.7E-21 133.4 11.5 120 162-293 12-135 (183)
97 2x77_A ADP-ribosylation factor 99.7 3.3E-17 1.1E-21 135.5 10.4 113 167-293 21-135 (189)
98 2oil_A CATX-8, RAS-related pro 99.7 2.9E-17 9.9E-22 136.2 10.1 116 167-293 24-142 (193)
99 3q3j_B RHO-related GTP-binding 99.7 2.5E-17 8.6E-22 139.5 9.9 116 167-293 26-143 (214)
100 2f7s_A C25KG, RAS-related prot 99.7 1.9E-17 6.4E-22 140.0 9.0 116 167-293 24-153 (217)
101 3q72_A GTP-binding protein RAD 99.7 1.6E-17 5.4E-22 134.0 8.2 112 168-293 2-118 (166)
102 2j1l_A RHO-related GTP-binding 99.7 1.6E-17 5.6E-22 140.5 8.5 116 167-293 33-150 (214)
103 2xtp_A GTPase IMAP family memb 99.7 8.6E-17 2.9E-21 140.2 13.2 124 167-293 21-151 (260)
104 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.9E-17 6.5E-22 135.9 8.3 116 167-293 4-121 (186)
105 3l0i_B RAS-related protein RAB 99.7 2.5E-18 8.7E-23 143.7 3.0 116 167-293 32-150 (199)
106 1m7b_A RND3/RHOE small GTP-bin 99.7 2.6E-17 8.8E-22 135.7 8.9 116 167-293 6-123 (184)
107 2gco_A H9, RHO-related GTP-bin 99.7 2.6E-17 8.7E-22 137.8 8.9 119 164-293 21-141 (201)
108 2g3y_A GTP-binding protein GEM 99.7 6E-17 2E-21 137.3 11.2 116 167-293 36-157 (211)
109 4dcu_A GTP-binding protein ENG 99.7 4.3E-17 1.5E-21 153.6 11.4 121 167-293 22-143 (456)
110 3con_A GTPase NRAS; structural 99.7 5.1E-17 1.8E-21 134.3 10.5 114 168-293 21-138 (190)
111 2j0v_A RAC-like GTP-binding pr 99.7 2.8E-17 9.4E-22 138.5 9.0 116 167-293 8-125 (212)
112 2o52_A RAS-related protein RAB 99.7 1.1E-17 3.7E-22 140.1 6.3 116 167-293 24-142 (200)
113 2atv_A RERG, RAS-like estrogen 99.7 4E-17 1.4E-21 135.9 9.8 114 167-293 27-144 (196)
114 3ihw_A Centg3; RAS, centaurin, 99.7 3.1E-17 1.1E-21 135.6 9.0 110 166-293 18-131 (184)
115 2fv8_A H6, RHO-related GTP-bin 99.7 4.5E-17 1.5E-21 136.9 10.1 115 168-293 25-141 (207)
116 2yc2_C IFT27, small RAB-relate 99.7 1.2E-17 4E-22 139.8 6.4 115 167-293 19-144 (208)
117 2erx_A GTP-binding protein DI- 99.7 5.2E-17 1.8E-21 131.3 10.0 114 168-293 3-121 (172)
118 3bwd_D RAC-like GTP-binding pr 99.7 1.3E-17 4.6E-22 136.5 6.5 116 167-293 7-124 (182)
119 2fg5_A RAB-22B, RAS-related pr 99.7 2.1E-17 7.2E-22 137.3 7.8 116 167-293 22-140 (192)
120 3oes_A GTPase rhebl1; small GT 99.7 5.8E-17 2E-21 135.6 10.4 115 167-293 23-141 (201)
121 2fh5_B SR-beta, signal recogni 99.7 1.3E-16 4.4E-21 134.6 12.2 115 167-293 6-127 (214)
122 2ged_A SR-beta, signal recogni 99.7 1.9E-17 6.7E-22 137.1 7.0 113 167-293 47-168 (193)
123 4dcu_A GTP-binding protein ENG 99.7 5.1E-17 1.8E-21 153.1 10.4 123 166-293 193-318 (456)
124 1gwn_A RHO-related GTP-binding 99.7 4.2E-17 1.4E-21 137.4 8.8 116 167-293 27-144 (205)
125 3dz8_A RAS-related protein RAB 99.7 1.6E-17 5.4E-22 137.8 6.0 116 167-293 22-140 (191)
126 3gj0_A GTP-binding nuclear pro 99.7 1.3E-17 4.3E-22 141.7 5.3 116 167-293 14-131 (221)
127 1jwy_B Dynamin A GTPase domain 99.7 3.9E-16 1.3E-20 139.7 14.9 140 150-293 6-210 (315)
128 3llu_A RAS-related GTP-binding 99.7 1.9E-16 6.6E-21 131.9 11.8 120 167-293 19-141 (196)
129 2aka_B Dynamin-1; fusion prote 99.7 8.1E-16 2.8E-20 136.4 16.4 139 151-293 8-204 (299)
130 2gf0_A GTP-binding protein DI- 99.7 8.7E-17 3E-21 133.6 9.4 117 167-293 7-126 (199)
131 4djt_A GTP-binding nuclear pro 99.7 5E-17 1.7E-21 137.5 7.1 116 167-293 10-129 (218)
132 1nrj_B SR-beta, signal recogni 99.7 5.1E-16 1.8E-20 131.2 12.2 114 166-293 10-132 (218)
133 2cjw_A GTP-binding protein GEM 99.7 8.5E-17 2.9E-21 134.0 7.1 117 167-293 5-126 (192)
134 1ega_A Protein (GTP-binding pr 99.7 1.2E-16 4.2E-21 142.6 8.4 117 168-293 8-128 (301)
135 3t1o_A Gliding protein MGLA; G 99.7 2.3E-16 7.8E-21 130.6 9.2 118 167-293 13-147 (198)
136 2zej_A Dardarin, leucine-rich 99.6 1.7E-16 6E-21 130.9 7.1 114 169-293 3-124 (184)
137 3th5_A RAS-related C3 botulinu 99.5 1.2E-17 4.2E-22 139.9 0.0 116 167-293 29-146 (204)
138 3o47_A ADP-ribosylation factor 99.6 4.1E-16 1.4E-20 140.9 10.0 113 167-293 164-278 (329)
139 2wkq_A NPH1-1, RAS-related C3 99.6 1.5E-16 5.2E-21 142.8 7.1 116 167-293 154-271 (332)
140 3t5d_A Septin-7; GTP-binding p 99.6 2E-15 6.7E-20 132.8 13.4 122 167-293 7-156 (274)
141 2cxx_A Probable GTP-binding pr 99.6 4.9E-16 1.7E-20 128.0 8.8 116 169-293 2-134 (190)
142 1mky_A Probable GTP-binding pr 99.6 4E-16 1.4E-20 146.3 9.3 121 167-293 179-304 (439)
143 3qq5_A Small GTP-binding prote 99.6 3.4E-16 1.2E-20 145.5 7.7 119 166-293 32-152 (423)
144 3lvq_E ARF-GAP with SH3 domain 99.6 1.1E-15 3.9E-20 145.3 10.9 113 167-293 321-435 (497)
145 2x2e_A Dynamin-1; nitration, h 99.6 1.4E-14 4.7E-19 132.0 15.2 123 167-293 30-209 (353)
146 2f9l_A RAB11B, member RAS onco 99.6 3.2E-15 1.1E-19 124.8 9.9 115 168-293 5-122 (199)
147 3r7w_B Gtpase2, GTP-binding pr 99.6 3E-15 1E-19 134.1 10.1 116 170-293 1-118 (331)
148 1wxq_A GTP-binding protein; st 99.6 1.2E-15 4.2E-20 141.0 7.5 89 170-260 2-114 (397)
149 2qpt_A EH domain-containing pr 99.6 5.2E-15 1.8E-19 142.1 10.9 122 167-293 64-230 (550)
150 3tr5_A RF-3, peptide chain rel 99.6 4.9E-15 1.7E-19 141.5 9.1 112 168-293 13-146 (528)
151 3t34_A Dynamin-related protein 99.6 3E-14 1E-18 130.1 13.5 126 164-293 30-215 (360)
152 1zo1_I IF2, translation initia 99.6 3.4E-15 1.2E-19 141.3 7.1 113 167-293 3-115 (501)
153 3izy_P Translation initiation 99.6 7E-16 2.4E-20 147.2 2.3 113 167-293 3-116 (537)
154 2j69_A Bacterial dynamin-like 99.5 1.2E-14 4.2E-19 143.2 10.9 117 167-293 68-242 (695)
155 1oix_A RAS-related protein RAB 99.5 2.3E-14 7.7E-19 119.0 10.4 115 168-293 29-146 (191)
156 3j2k_7 ERF3, eukaryotic polype 99.5 5E-14 1.7E-18 131.9 13.9 116 167-293 16-167 (439)
157 3dpu_A RAB family protein; roc 99.5 2.5E-14 8.7E-19 137.2 11.6 114 166-293 39-162 (535)
158 3izq_1 HBS1P, elongation facto 99.5 1.3E-14 4.4E-19 141.0 9.3 118 166-293 165-317 (611)
159 3p26_A Elongation factor 1 alp 99.5 2.6E-14 9E-19 135.5 11.0 117 167-293 32-183 (483)
160 1wb1_A Translation elongation 99.5 3.2E-14 1.1E-18 134.8 10.0 112 168-293 19-137 (482)
161 3zvr_A Dynamin-1; hydrolase, D 99.5 5E-13 1.7E-17 131.7 18.1 124 166-293 49-229 (772)
162 2c78_A Elongation factor TU-A; 99.5 8E-14 2.7E-18 129.3 10.4 113 167-293 10-140 (405)
163 3c5h_A Glucocorticoid receptor 99.5 2.3E-14 7.7E-19 124.8 6.2 128 163-293 14-210 (255)
164 2h5e_A Peptide chain release f 99.5 2.5E-13 8.6E-18 129.8 13.5 112 168-293 13-146 (529)
165 3sjy_A Translation initiation 99.5 2E-13 6.9E-18 126.5 11.6 115 167-293 7-141 (403)
166 1zun_B Sulfate adenylate trans 99.5 2.7E-13 9.2E-18 126.8 12.4 114 167-293 23-169 (434)
167 2xex_A Elongation factor G; GT 99.5 1.2E-13 4.2E-18 136.1 10.5 113 167-293 9-139 (693)
168 1pui_A ENGB, probable GTP-bind 99.5 2.9E-13 9.8E-18 113.4 11.1 118 167-293 25-149 (210)
169 1d2e_A Elongation factor TU (E 99.5 2E-13 6.9E-18 126.2 11.0 112 168-293 3-131 (397)
170 1udx_A The GTP-binding protein 99.5 1.3E-13 4.3E-18 127.9 9.1 120 169-293 158-281 (416)
171 1g7s_A Translation initiation 99.4 1.2E-13 4.3E-18 133.5 8.6 113 167-293 4-134 (594)
172 1jal_A YCHF protein; nucleotid 99.4 8.2E-14 2.8E-18 126.7 6.6 90 169-260 3-109 (363)
173 1kk1_A EIF2gamma; initiation o 99.4 4.6E-13 1.6E-17 124.3 11.7 114 167-293 9-149 (410)
174 2elf_A Protein translation elo 99.4 2.3E-13 8E-18 124.6 9.2 101 170-293 23-125 (370)
175 1jny_A EF-1-alpha, elongation 99.4 1.3E-13 4.6E-18 128.9 7.5 116 167-293 5-156 (435)
176 1dar_A EF-G, elongation factor 99.4 3.1E-13 1.1E-17 133.2 10.2 113 167-293 11-141 (691)
177 1s0u_A EIF-2-gamma, translatio 99.4 8E-13 2.7E-17 122.7 12.2 115 167-293 7-147 (408)
178 1r5b_A Eukaryotic peptide chai 99.4 1.3E-13 4.4E-18 130.1 6.7 116 167-293 42-193 (467)
179 3cb4_D GTP-binding protein LEP 99.4 6.7E-13 2.3E-17 128.3 11.1 113 167-293 3-135 (599)
180 2qag_A Septin-2, protein NEDD5 99.4 1.3E-12 4.4E-17 119.4 11.7 122 167-293 36-186 (361)
181 1f60_A Elongation factor EEF1A 99.4 1.3E-13 4.3E-18 129.9 5.1 115 168-293 7-157 (458)
182 2rdo_7 EF-G, elongation factor 99.4 1.5E-12 5.3E-17 128.4 13.0 113 167-293 9-146 (704)
183 3mca_A HBS1, elongation factor 99.4 5.6E-14 1.9E-18 136.1 2.4 113 167-293 176-327 (592)
184 2www_A Methylmalonic aciduria 99.4 4.4E-13 1.5E-17 121.9 8.1 107 166-293 72-224 (349)
185 2ywe_A GTP-binding protein LEP 99.4 8E-13 2.7E-17 127.6 10.2 112 168-293 6-137 (600)
186 1n0u_A EF-2, elongation factor 99.4 9.3E-13 3.2E-17 132.3 8.8 113 167-293 18-162 (842)
187 3avx_A Elongation factor TS, e 99.4 3.5E-12 1.2E-16 129.6 12.6 113 167-293 295-424 (1289)
188 3p32_A Probable GTPase RV1496/ 99.3 1.5E-12 5.1E-17 118.7 7.9 107 166-293 77-229 (355)
189 3vqt_A RF-3, peptide chain rel 99.3 2.2E-12 7.5E-17 123.8 9.4 112 168-293 31-164 (548)
190 2ohf_A Protein OLA1, GTP-bindi 99.3 1E-12 3.5E-17 120.7 6.7 94 167-262 21-131 (396)
191 2dby_A GTP-binding protein; GD 99.3 6.8E-12 2.3E-16 114.6 8.1 89 169-259 2-111 (368)
192 2dy1_A Elongation factor G; tr 99.3 2.9E-11 1E-15 118.7 12.3 113 167-293 8-138 (665)
193 3ec1_A YQEH GTPase; atnos1, at 99.2 8.9E-13 3.1E-17 120.7 -1.0 116 169-293 163-286 (369)
194 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 2.5E-11 8.6E-16 111.5 8.3 91 167-259 19-127 (392)
195 3h2y_A GTPase family protein; 99.2 1.1E-12 3.6E-17 120.1 -1.1 116 169-293 161-285 (368)
196 2p67_A LAO/AO transport system 99.2 1E-11 3.4E-16 112.6 5.2 106 167-293 55-206 (341)
197 3j25_A Tetracycline resistance 99.2 1.3E-11 4.4E-16 120.7 5.6 112 168-293 2-131 (638)
198 2qag_C Septin-7; cell cycle, c 99.1 1.6E-10 5.6E-15 107.1 11.0 125 164-293 27-179 (418)
199 4fn5_A EF-G 1, elongation fact 99.1 3E-10 1E-14 112.3 12.3 113 167-293 12-149 (709)
200 1f5n_A Interferon-induced guan 99.0 1.7E-10 5.8E-15 111.0 6.6 91 165-260 35-133 (592)
201 2qnr_A Septin-2, protein NEDD5 99.0 9.6E-10 3.3E-14 97.8 10.8 123 166-293 16-167 (301)
202 2wsm_A Hydrogenase expression/ 99.0 8.8E-11 3E-15 99.1 3.7 106 167-293 29-166 (221)
203 1puj_A YLQF, conserved hypothe 99.0 5.5E-10 1.9E-14 98.4 8.3 63 166-231 118-181 (282)
204 2qm8_A GTPase/ATPase; G protei 99.0 2.6E-10 8.8E-15 103.1 5.5 106 167-293 54-205 (337)
205 4fid_A G protein alpha subunit 99.0 1.5E-09 5.2E-14 97.7 10.1 83 202-293 148-240 (340)
206 1yrb_A ATP(GTP)binding protein 98.9 1.6E-09 5.5E-14 93.7 6.8 28 167-194 13-45 (262)
207 3sop_A Neuronal-specific septi 98.9 7.1E-09 2.4E-13 90.7 10.6 120 169-293 3-152 (270)
208 2v3c_C SRP54, signal recogniti 98.9 2.5E-08 8.7E-13 92.8 14.6 113 168-293 99-250 (432)
209 2j37_W Signal recognition part 98.9 6.2E-09 2.1E-13 98.5 10.2 116 167-293 100-252 (504)
210 2qag_B Septin-6, protein NEDD5 98.8 1.7E-08 5.9E-13 93.4 11.2 120 168-293 42-188 (427)
211 2hf9_A Probable hydrogenase ni 98.8 6.2E-09 2.1E-13 87.9 6.8 25 167-191 37-61 (226)
212 3cnl_A YLQF, putative uncharac 98.8 4.8E-09 1.6E-13 91.4 6.1 59 169-230 100-159 (262)
213 3dm5_A SRP54, signal recogniti 98.8 2.3E-07 7.8E-12 86.3 16.5 117 167-293 99-251 (443)
214 2yhs_A FTSY, cell division pro 98.7 2.4E-07 8.2E-12 87.0 14.7 117 47-190 199-315 (503)
215 3kl4_A SRP54, signal recogniti 98.7 1.4E-07 4.8E-12 87.6 12.8 116 167-292 96-249 (433)
216 1vma_A Cell division protein F 98.5 4.1E-07 1.4E-11 80.9 10.8 106 46-190 18-126 (306)
217 1zu4_A FTSY; GTPase, signal re 98.5 4.3E-06 1.5E-10 74.8 17.1 118 49-189 9-126 (320)
218 3ohm_A Guanine nucleotide-bind 98.5 4.2E-07 1.4E-11 81.4 9.3 84 201-293 153-246 (327)
219 3b9q_A Chloroplast SRP recepto 98.5 4.6E-06 1.6E-10 73.9 15.5 119 48-190 4-122 (302)
220 2xxa_A Signal recognition part 98.5 3.1E-06 1.1E-10 78.8 14.7 115 167-292 99-251 (433)
221 1azs_C GS-alpha; complex (lyas 98.4 1.2E-07 4.3E-12 87.1 4.8 81 202-293 204-296 (402)
222 1cip_A Protein (guanine nucleo 98.4 1.7E-07 5.9E-12 84.9 5.0 84 201-293 179-272 (353)
223 1tq4_A IIGP1, interferon-induc 98.4 7.5E-07 2.6E-11 82.3 9.2 114 168-293 69-187 (413)
224 3szr_A Interferon-induced GTP- 98.4 3.7E-06 1.3E-10 81.6 14.6 26 167-192 44-69 (608)
225 1j8m_F SRP54, signal recogniti 98.4 6.3E-06 2.2E-10 72.9 14.7 115 168-292 98-250 (297)
226 1zcb_A G alpha I/13; GTP-bindi 98.4 1.5E-07 5.3E-12 85.6 3.9 83 202-293 188-280 (362)
227 3q5d_A Atlastin-1; G protein, 98.4 1E-06 3.5E-11 82.0 8.8 62 167-228 66-153 (447)
228 2og2_A Putative signal recogni 98.3 1.7E-05 5.7E-10 71.9 16.4 23 168-190 157-179 (359)
229 2xtz_A Guanine nucleotide-bind 98.2 5.7E-07 1.9E-11 81.5 3.0 71 214-293 182-262 (354)
230 3e70_C DPA, signal recognition 98.1 1.1E-05 3.7E-10 72.3 10.1 116 167-292 128-279 (328)
231 2ffh_A Protein (FFH); SRP54, s 98.1 7.2E-05 2.5E-09 69.2 14.4 23 167-189 97-119 (425)
232 1rj9_A FTSY, signal recognitio 98.0 2.9E-05 9.9E-10 68.8 11.0 119 167-292 101-258 (304)
233 1u0l_A Probable GTPase ENGC; p 98.0 1.3E-06 4.3E-11 77.5 2.0 95 183-293 32-127 (301)
234 2px0_A Flagellar biosynthesis 98.0 4.4E-05 1.5E-09 67.4 11.6 23 167-189 104-126 (296)
235 4dzz_A Plasmid partitioning pr 97.6 0.00013 4.4E-09 60.0 7.1 66 215-292 76-141 (206)
236 1t9h_A YLOQ, probable GTPase E 97.5 2.5E-05 8.6E-10 69.3 1.5 57 169-229 174-238 (307)
237 4ido_A Atlastin-1; GTPase, GTP 97.5 0.00078 2.7E-08 62.6 11.3 107 167-277 66-198 (457)
238 2yv5_A YJEQ protein; hydrolase 97.4 0.00021 7.1E-09 63.2 6.6 54 170-227 167-228 (302)
239 3ney_A 55 kDa erythrocyte memb 97.4 5.1E-05 1.8E-09 62.9 2.1 54 168-223 19-74 (197)
240 2rcn_A Probable GTPase ENGC; Y 97.3 0.00015 5.3E-09 65.5 3.9 57 170-229 217-282 (358)
241 1u0l_A Probable GTPase ENGC; p 97.2 0.00043 1.5E-08 61.1 6.0 56 170-228 171-234 (301)
242 1ls1_A Signal recognition part 97.2 0.0004 1.4E-08 61.1 5.4 24 167-190 97-120 (295)
243 1kgd_A CASK, peripheral plasma 97.1 0.00024 8.2E-09 57.6 3.1 24 169-192 6-29 (180)
244 1ex7_A Guanylate kinase; subst 97.0 0.00016 5.6E-09 59.3 1.5 39 170-208 3-43 (186)
245 2yv5_A YJEQ protein; hydrolase 97.0 0.00052 1.8E-08 60.6 4.1 46 244-293 76-122 (302)
246 1ye8_A Protein THEP1, hypothet 96.8 0.00059 2E-08 55.4 2.9 22 170-191 2-23 (178)
247 1lvg_A Guanylate kinase, GMP k 96.8 0.00058 2E-08 56.3 2.7 23 169-191 5-27 (198)
248 3c8u_A Fructokinase; YP_612366 96.7 0.0013 4.4E-08 54.5 4.5 24 167-190 21-44 (208)
249 1puj_A YLQF, conserved hypothe 96.6 0.0026 8.9E-08 55.5 5.9 42 245-293 21-62 (282)
250 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.036 1.2E-06 46.8 12.9 23 168-190 39-61 (262)
251 1zp6_A Hypothetical protein AT 96.6 0.0012 3.9E-08 53.6 3.1 24 168-191 9-32 (191)
252 3tr0_A Guanylate kinase, GMP k 96.5 0.0013 4.4E-08 53.9 3.3 23 169-191 8-30 (205)
253 3a00_A Guanylate kinase, GMP k 96.5 0.0012 4.1E-08 53.7 2.7 23 170-192 3-25 (186)
254 3tau_A Guanylate kinase, GMP k 96.5 0.0016 5.6E-08 53.9 3.5 26 167-192 7-32 (208)
255 1s96_A Guanylate kinase, GMP k 96.5 0.0014 5E-08 54.9 3.1 25 168-192 16-40 (219)
256 1znw_A Guanylate kinase, GMP k 96.4 0.0015 5.1E-08 54.0 3.1 24 169-192 21-44 (207)
257 1z6g_A Guanylate kinase; struc 96.4 0.0014 4.8E-08 54.8 2.9 24 169-192 24-47 (218)
258 2j41_A Guanylate kinase; GMP, 96.3 0.0022 7.6E-08 52.5 3.2 25 168-192 6-30 (207)
259 1kag_A SKI, shikimate kinase I 96.3 0.002 6.9E-08 51.2 2.8 23 169-191 5-27 (173)
260 3n70_A Transport activator; si 96.3 0.026 8.9E-07 43.6 9.2 24 168-191 24-47 (145)
261 3end_A Light-independent proto 96.2 0.0067 2.3E-07 53.1 6.3 65 215-292 157-224 (307)
262 3tif_A Uncharacterized ABC tra 96.2 0.0025 8.6E-08 54.0 3.3 24 169-192 32-55 (235)
263 2qor_A Guanylate kinase; phosp 96.2 0.0022 7.6E-08 52.8 2.9 24 168-191 12-35 (204)
264 4gp7_A Metallophosphoesterase; 96.2 0.002 6.9E-08 51.6 2.6 21 169-189 10-30 (171)
265 4b4t_K 26S protease regulatory 96.2 0.051 1.7E-06 50.1 12.3 24 168-191 206-229 (428)
266 3cwq_A Para family chromosome 96.2 0.0069 2.4E-07 50.1 6.0 64 214-292 67-131 (209)
267 3kb2_A SPBC2 prophage-derived 96.2 0.0023 7.9E-08 50.6 2.8 22 169-190 2-23 (173)
268 4eun_A Thermoresistant glucoki 96.2 0.0026 8.9E-08 52.2 3.1 23 168-190 29-51 (200)
269 3h2y_A GTPase family protein; 96.2 0.0038 1.3E-07 56.6 4.5 48 239-293 61-108 (368)
270 2pcj_A ABC transporter, lipopr 96.1 0.0021 7.3E-08 54.1 2.4 23 170-192 32-54 (224)
271 3asz_A Uridine kinase; cytidin 96.1 0.0023 8E-08 52.7 2.7 24 168-191 6-29 (211)
272 3ec1_A YQEH GTPase; atnos1, at 96.1 0.0018 6.3E-08 58.7 2.2 47 240-293 64-110 (369)
273 3l82_B F-box only protein 4; T 96.1 0.012 4.1E-07 49.0 6.8 52 242-293 120-175 (227)
274 4b4t_L 26S protease subunit RP 96.1 0.051 1.8E-06 50.2 11.9 24 168-191 215-238 (437)
275 2bbw_A Adenylate kinase 4, AK4 96.1 0.0031 1.1E-07 53.5 3.4 25 168-192 27-54 (246)
276 3lw7_A Adenylate kinase relate 96.1 0.0028 9.5E-08 50.0 2.9 20 169-188 2-21 (179)
277 2onk_A Molybdate/tungstate ABC 96.1 0.0026 9E-08 54.1 2.9 24 169-192 25-48 (240)
278 3t61_A Gluconokinase; PSI-biol 96.1 0.0031 1.1E-07 51.7 3.2 23 168-190 18-40 (202)
279 1htw_A HI0065; nucleotide-bind 96.1 0.0031 1E-07 50.1 3.0 23 170-192 35-57 (158)
280 2bdt_A BH3686; alpha-beta prot 96.1 0.0026 9E-08 51.5 2.6 21 170-190 4-24 (189)
281 1sgw_A Putative ABC transporte 96.1 0.0028 9.6E-08 53.0 2.7 23 170-192 37-59 (214)
282 2cbz_A Multidrug resistance-as 96.0 0.0035 1.2E-07 53.2 3.3 24 169-192 32-55 (237)
283 3ec2_A DNA replication protein 96.0 0.006 2.1E-07 48.9 4.6 24 168-191 38-61 (180)
284 3gfo_A Cobalt import ATP-bindi 96.0 0.003 1E-07 55.0 2.9 23 170-192 36-58 (275)
285 1ly1_A Polynucleotide kinase; 96.0 0.0034 1.1E-07 50.1 3.0 21 170-190 4-24 (181)
286 1knq_A Gluconate kinase; ALFA/ 96.0 0.0037 1.3E-07 49.9 3.2 23 168-190 8-30 (175)
287 4g1u_C Hemin import ATP-bindin 96.0 0.0029 1E-07 54.7 2.7 24 169-192 38-61 (266)
288 1g6h_A High-affinity branched- 96.0 0.0031 1.1E-07 54.2 2.9 24 169-192 34-57 (257)
289 1b0u_A Histidine permease; ABC 96.0 0.0037 1.3E-07 53.9 3.4 24 169-192 33-56 (262)
290 3vaa_A Shikimate kinase, SK; s 96.0 0.0036 1.2E-07 51.3 3.1 23 168-190 25-47 (199)
291 2ff7_A Alpha-hemolysin translo 96.0 0.0032 1.1E-07 53.8 2.9 23 170-192 37-59 (247)
292 2eyu_A Twitching motility prot 96.0 0.0035 1.2E-07 54.0 3.1 24 168-191 25-48 (261)
293 2pze_A Cystic fibrosis transme 96.0 0.0034 1.2E-07 53.0 2.9 24 169-192 35-58 (229)
294 2i3b_A HCR-ntpase, human cance 96.0 0.0032 1.1E-07 51.6 2.6 22 170-191 3-24 (189)
295 1mv5_A LMRA, multidrug resista 96.0 0.0039 1.3E-07 53.1 3.3 24 169-192 29-52 (243)
296 1bif_A 6-phosphofructo-2-kinas 96.0 0.0026 8.9E-08 59.5 2.4 25 167-191 38-62 (469)
297 4b4t_H 26S protease regulatory 96.0 0.086 2.9E-06 49.0 12.4 24 168-191 243-266 (467)
298 3b85_A Phosphate starvation-in 96.0 0.003 1E-07 52.6 2.4 22 170-191 24-45 (208)
299 3tqc_A Pantothenate kinase; bi 96.0 0.011 3.8E-07 52.4 6.3 24 167-190 91-114 (321)
300 2v9p_A Replication protein E1; 95.9 0.0038 1.3E-07 55.1 3.1 24 168-191 126-149 (305)
301 1np6_A Molybdopterin-guanine d 95.9 0.0039 1.3E-07 50.4 3.0 24 168-191 6-29 (174)
302 1ji0_A ABC transporter; ATP bi 95.9 0.0036 1.2E-07 53.2 2.9 23 170-192 34-56 (240)
303 2olj_A Amino acid ABC transpor 95.9 0.0043 1.5E-07 53.6 3.4 24 169-192 51-74 (263)
304 1rz3_A Hypothetical protein rb 95.9 0.008 2.7E-07 49.3 4.9 24 167-190 21-44 (201)
305 3uie_A Adenylyl-sulfate kinase 95.9 0.004 1.4E-07 51.0 3.1 24 168-191 25-48 (200)
306 2qi9_C Vitamin B12 import ATP- 95.9 0.0037 1.3E-07 53.5 2.9 23 170-192 28-50 (249)
307 4b4t_I 26S protease regulatory 95.9 0.086 2.9E-06 48.5 12.1 24 168-191 216-239 (437)
308 2if2_A Dephospho-COA kinase; a 95.9 0.0036 1.2E-07 51.2 2.7 22 169-190 2-23 (204)
309 3la6_A Tyrosine-protein kinase 95.9 0.05 1.7E-06 47.4 10.2 64 215-292 202-265 (286)
310 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0039 1.3E-07 53.3 3.0 22 170-191 31-52 (250)
311 2ghi_A Transport protein; mult 95.9 0.0045 1.5E-07 53.3 3.3 24 169-192 47-70 (260)
312 1qhx_A CPT, protein (chloramph 95.9 0.0046 1.6E-07 49.3 3.2 23 169-191 4-26 (178)
313 1vpl_A ABC transporter, ATP-bi 95.9 0.0047 1.6E-07 53.1 3.4 23 170-192 43-65 (256)
314 2x8a_A Nuclear valosin-contain 95.9 0.0065 2.2E-07 52.6 4.3 21 171-191 47-67 (274)
315 1nks_A Adenylate kinase; therm 95.9 0.0039 1.3E-07 50.2 2.7 22 169-190 2-23 (194)
316 2ihy_A ABC transporter, ATP-bi 95.9 0.004 1.4E-07 54.3 2.9 23 170-192 49-71 (279)
317 1jbk_A CLPB protein; beta barr 95.8 0.0094 3.2E-07 47.4 4.9 24 168-191 43-66 (195)
318 2zu0_C Probable ATP-dependent 95.8 0.0051 1.7E-07 53.2 3.5 23 169-191 47-69 (267)
319 3h4m_A Proteasome-activating n 95.8 0.029 1E-06 48.2 8.4 24 168-191 51-74 (285)
320 1odf_A YGR205W, hypothetical 3 95.8 0.0081 2.8E-07 52.6 4.8 23 167-189 30-52 (290)
321 2ixe_A Antigen peptide transpo 95.8 0.0049 1.7E-07 53.4 3.3 24 169-192 46-69 (271)
322 1cke_A CK, MSSA, protein (cyti 95.8 0.0046 1.6E-07 51.4 3.0 22 169-190 6-27 (227)
323 3aez_A Pantothenate kinase; tr 95.8 0.0047 1.6E-07 54.7 3.1 24 167-190 89-112 (312)
324 2nq2_C Hypothetical ABC transp 95.8 0.0043 1.5E-07 53.2 2.9 23 170-192 33-55 (253)
325 3trf_A Shikimate kinase, SK; a 95.8 0.005 1.7E-07 49.5 3.1 23 168-190 5-27 (185)
326 2rhm_A Putative kinase; P-loop 95.8 0.0048 1.6E-07 49.8 2.9 23 168-190 5-27 (193)
327 1gvn_B Zeta; postsegregational 95.8 0.011 3.6E-07 51.7 5.3 24 167-190 32-55 (287)
328 2jaq_A Deoxyguanosine kinase; 95.8 0.0047 1.6E-07 50.3 2.9 21 170-190 2-22 (205)
329 3bfv_A CAPA1, CAPB2, membrane 95.8 0.099 3.4E-06 45.0 11.5 63 215-292 192-255 (271)
330 3lnc_A Guanylate kinase, GMP k 95.8 0.0034 1.2E-07 52.7 2.0 23 169-191 28-51 (231)
331 1kht_A Adenylate kinase; phosp 95.8 0.0054 1.8E-07 49.3 3.1 22 169-190 4-25 (192)
332 2yz2_A Putative ABC transporte 95.8 0.0055 1.9E-07 52.9 3.3 23 170-192 35-57 (266)
333 1y63_A LMAJ004144AAA protein; 95.7 0.0061 2.1E-07 49.2 3.4 25 167-191 9-33 (184)
334 2wwf_A Thymidilate kinase, put 95.7 0.0066 2.2E-07 49.8 3.5 24 167-190 9-32 (212)
335 1jjv_A Dephospho-COA kinase; P 95.7 0.0055 1.9E-07 50.3 3.0 22 169-190 3-24 (206)
336 4b4t_J 26S protease regulatory 95.7 0.11 3.8E-06 47.4 11.8 24 168-191 182-205 (405)
337 2pjz_A Hypothetical protein ST 95.6 0.0055 1.9E-07 52.9 2.9 23 170-192 32-54 (263)
338 3syl_A Protein CBBX; photosynt 95.6 0.2 6.7E-06 43.4 13.1 25 167-191 66-90 (309)
339 2f1r_A Molybdopterin-guanine d 95.6 0.0025 8.6E-08 51.3 0.6 23 169-191 3-25 (171)
340 4a74_A DNA repair and recombin 95.6 0.0046 1.6E-07 51.3 2.3 23 169-191 26-48 (231)
341 2qt1_A Nicotinamide riboside k 95.6 0.0079 2.7E-07 49.4 3.6 25 167-191 20-44 (207)
342 2yvu_A Probable adenylyl-sulfa 95.6 0.0076 2.6E-07 48.6 3.5 24 167-190 12-35 (186)
343 2jeo_A Uridine-cytidine kinase 95.6 0.0065 2.2E-07 51.5 3.1 23 168-190 25-47 (245)
344 3cm0_A Adenylate kinase; ATP-b 95.6 0.0061 2.1E-07 49.0 2.8 22 169-190 5-26 (186)
345 4e22_A Cytidylate kinase; P-lo 95.6 0.0084 2.9E-07 51.2 3.7 23 167-189 26-48 (252)
346 2ehv_A Hypothetical protein PH 95.6 0.006 2E-07 51.3 2.8 21 169-189 31-51 (251)
347 3fb4_A Adenylate kinase; psych 95.5 0.0067 2.3E-07 50.1 3.0 21 170-190 2-22 (216)
348 3nh6_A ATP-binding cassette SU 95.5 0.0048 1.6E-07 54.5 2.1 25 168-192 80-104 (306)
349 1zak_A Adenylate kinase; ATP:A 95.5 0.0068 2.3E-07 50.4 3.0 24 167-190 4-27 (222)
350 3iij_A Coilin-interacting nucl 95.5 0.0075 2.5E-07 48.3 3.1 22 168-189 11-32 (180)
351 3kjh_A CO dehydrogenase/acetyl 95.5 0.015 5.3E-07 48.7 5.2 64 214-292 131-194 (254)
352 1tue_A Replication protein E1; 95.5 0.012 4.2E-07 48.7 4.4 39 148-190 42-80 (212)
353 2plr_A DTMP kinase, probable t 95.5 0.0077 2.6E-07 49.2 3.2 22 169-190 5-26 (213)
354 2kjq_A DNAA-related protein; s 95.5 0.0064 2.2E-07 47.7 2.5 24 168-191 36-59 (149)
355 2cdn_A Adenylate kinase; phosp 95.5 0.0092 3.2E-07 48.7 3.6 24 167-190 19-42 (201)
356 3jvv_A Twitching mobility prot 95.5 0.0063 2.1E-07 54.9 2.7 22 170-191 125-146 (356)
357 1uf9_A TT1252 protein; P-loop, 95.5 0.0075 2.6E-07 49.1 3.0 25 167-191 7-31 (203)
358 2p5t_B PEZT; postsegregational 95.5 0.012 4E-07 50.2 4.3 24 167-190 31-54 (253)
359 2bbs_A Cystic fibrosis transme 95.5 0.0073 2.5E-07 52.9 3.1 24 169-192 65-88 (290)
360 3dl0_A Adenylate kinase; phosp 95.5 0.0075 2.6E-07 49.8 3.0 21 170-190 2-22 (216)
361 2c95_A Adenylate kinase 1; tra 95.5 0.0081 2.8E-07 48.6 3.2 23 168-190 9-31 (196)
362 1aky_A Adenylate kinase; ATP:A 95.5 0.0084 2.9E-07 49.8 3.3 23 168-190 4-26 (220)
363 1via_A Shikimate kinase; struc 95.5 0.0069 2.4E-07 48.3 2.7 21 170-190 6-26 (175)
364 2v54_A DTMP kinase, thymidylat 95.4 0.0086 2.9E-07 48.8 3.3 24 168-191 4-27 (204)
365 1zd8_A GTP:AMP phosphotransfer 95.4 0.0074 2.5E-07 50.4 2.9 23 168-190 7-29 (227)
366 1ukz_A Uridylate kinase; trans 95.4 0.011 3.6E-07 48.4 3.8 24 167-190 14-37 (203)
367 3b9p_A CG5977-PA, isoform A; A 95.4 0.21 7.1E-06 43.0 12.3 24 168-191 54-77 (297)
368 1tev_A UMP-CMP kinase; ploop, 95.4 0.0083 2.8E-07 48.3 3.0 22 169-190 4-25 (196)
369 1xjc_A MOBB protein homolog; s 95.4 0.0084 2.9E-07 48.2 3.0 23 168-190 4-26 (169)
370 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0084 2.9E-07 51.4 3.2 23 168-190 4-26 (260)
371 3fvq_A Fe(3+) IONS import ATP- 95.4 0.0064 2.2E-07 54.9 2.5 23 170-192 32-54 (359)
372 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0061 2.1E-07 54.4 2.4 23 170-192 173-195 (330)
373 2p65_A Hypothetical protein PF 95.4 0.013 4.4E-07 46.5 4.1 24 168-191 43-66 (187)
374 2gza_A Type IV secretion syste 95.4 0.007 2.4E-07 54.7 2.8 24 169-192 176-199 (361)
375 3tui_C Methionine import ATP-b 95.3 0.0097 3.3E-07 53.8 3.5 24 169-192 55-78 (366)
376 1z47_A CYSA, putative ABC-tran 95.3 0.0076 2.6E-07 54.3 2.8 23 170-192 43-65 (355)
377 2ewv_A Twitching motility prot 95.3 0.0084 2.9E-07 54.4 3.0 23 168-190 136-158 (372)
378 1lw7_A Transcriptional regulat 95.3 0.0064 2.2E-07 54.9 2.2 24 168-191 170-193 (365)
379 3rlf_A Maltose/maltodextrin im 95.3 0.0082 2.8E-07 54.6 2.9 23 170-192 31-53 (381)
380 1nn5_A Similar to deoxythymidy 95.2 0.01 3.5E-07 48.7 3.1 23 168-190 9-31 (215)
381 1sq5_A Pantothenate kinase; P- 95.2 0.0088 3E-07 52.7 2.9 24 167-190 79-102 (308)
382 2pt5_A Shikimate kinase, SK; a 95.2 0.01 3.6E-07 46.7 3.0 21 170-190 2-22 (168)
383 2vli_A Antibiotic resistance p 95.2 0.0078 2.7E-07 48.1 2.3 23 168-190 5-27 (183)
384 1e6c_A Shikimate kinase; phosp 95.2 0.011 3.6E-07 46.9 3.0 22 169-190 3-24 (173)
385 1fnn_A CDC6P, cell division co 95.2 0.076 2.6E-06 47.5 9.1 23 169-191 45-67 (389)
386 1g29_1 MALK, maltose transport 95.2 0.0089 3.1E-07 54.2 2.8 23 170-192 31-53 (372)
387 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.097 3.3E-06 46.2 9.5 24 168-191 45-68 (322)
388 3l2o_B F-box only protein 4; s 95.2 0.024 8.1E-07 49.5 5.3 52 242-293 205-260 (312)
389 2iyv_A Shikimate kinase, SK; t 95.2 0.01 3.4E-07 47.7 2.8 22 169-190 3-24 (184)
390 3tlx_A Adenylate kinase 2; str 95.2 0.011 3.9E-07 50.0 3.3 24 167-190 28-51 (243)
391 2it1_A 362AA long hypothetical 95.2 0.012 4E-07 53.2 3.5 23 170-192 31-53 (362)
392 2yyz_A Sugar ABC transporter, 95.2 0.012 3.9E-07 53.2 3.5 23 170-192 31-53 (359)
393 1v43_A Sugar-binding transport 95.2 0.0093 3.2E-07 54.1 2.9 23 170-192 39-61 (372)
394 1ixz_A ATP-dependent metallopr 95.1 0.0091 3.1E-07 50.7 2.6 22 170-191 51-72 (254)
395 2ze6_A Isopentenyl transferase 95.1 0.01 3.4E-07 50.8 2.9 21 170-190 3-23 (253)
396 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.7E-07 47.9 2.9 22 169-190 13-34 (199)
397 2oap_1 GSPE-2, type II secreti 95.1 0.0096 3.3E-07 56.3 2.9 23 170-192 262-284 (511)
398 2pez_A Bifunctional 3'-phospho 95.1 0.012 4E-07 47.1 3.0 23 168-190 5-27 (179)
399 1e4v_A Adenylate kinase; trans 95.1 0.01 3.5E-07 49.1 2.7 21 170-190 2-22 (214)
400 1p9r_A General secretion pathw 95.0 0.0095 3.3E-07 54.9 2.6 23 169-191 168-190 (418)
401 3cio_A ETK, tyrosine-protein k 95.0 0.26 8.9E-06 43.0 11.8 62 216-292 215-277 (299)
402 2vp4_A Deoxynucleoside kinase; 95.0 0.01 3.5E-07 49.8 2.5 25 167-191 19-43 (230)
403 4b4t_M 26S protease regulatory 95.0 0.043 1.5E-06 50.7 6.9 24 168-191 215-238 (434)
404 2pbr_A DTMP kinase, thymidylat 95.0 0.012 4.3E-07 47.2 3.0 21 170-190 2-22 (195)
405 3sr0_A Adenylate kinase; phosp 95.0 0.013 4.3E-07 48.7 3.0 21 170-190 2-22 (206)
406 3be4_A Adenylate kinase; malar 95.0 0.0096 3.3E-07 49.4 2.3 23 168-190 5-27 (217)
407 3d31_A Sulfate/molybdate ABC t 95.0 0.0077 2.6E-07 54.1 1.7 23 170-192 28-50 (348)
408 1nij_A Hypothetical protein YJ 95.0 0.0087 3E-07 53.0 2.0 25 168-192 4-28 (318)
409 1qf9_A UMP/CMP kinase, protein 94.9 0.012 4.1E-07 47.2 2.7 22 169-190 7-28 (194)
410 1ak2_A Adenylate kinase isoenz 94.9 0.016 5.4E-07 48.7 3.5 24 167-190 15-38 (233)
411 3vfd_A Spastin; ATPase, microt 94.9 0.15 5.1E-06 46.1 10.1 24 168-191 148-171 (389)
412 1gtv_A TMK, thymidylate kinase 94.9 0.0053 1.8E-07 50.5 0.3 21 170-190 2-22 (214)
413 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.012 4.2E-07 48.6 2.6 22 169-190 24-45 (235)
414 3gd7_A Fusion complex of cysti 94.8 0.012 3.9E-07 53.8 2.5 24 169-192 48-71 (390)
415 2z0h_A DTMP kinase, thymidylat 94.8 0.015 5.1E-07 47.0 3.0 22 170-191 2-23 (197)
416 2xb4_A Adenylate kinase; ATP-b 94.8 0.015 5.1E-07 48.5 3.0 21 170-190 2-22 (223)
417 1vht_A Dephospho-COA kinase; s 94.8 0.015 5.2E-07 48.0 3.0 23 168-190 4-26 (218)
418 2f6r_A COA synthase, bifunctio 94.8 0.018 6E-07 50.0 3.5 24 166-189 73-96 (281)
419 1m7g_A Adenylylsulfate kinase; 94.8 0.016 5.3E-07 47.8 3.0 23 168-190 25-47 (211)
420 2w58_A DNAI, primosome compone 94.8 0.038 1.3E-06 44.9 5.3 22 169-190 55-76 (202)
421 1iy2_A ATP-dependent metallopr 94.7 0.014 4.7E-07 50.4 2.6 22 170-191 75-96 (278)
422 3umf_A Adenylate kinase; rossm 94.7 0.018 6.1E-07 48.2 3.2 23 168-190 29-51 (217)
423 3kta_A Chromosome segregation 94.7 0.014 4.8E-07 46.7 2.5 22 169-190 27-48 (182)
424 1in4_A RUVB, holliday junction 94.7 0.014 4.7E-07 52.0 2.6 22 170-191 53-74 (334)
425 3nwj_A ATSK2; P loop, shikimat 94.7 0.016 5.5E-07 49.5 2.9 22 169-190 49-70 (250)
426 3bos_A Putative DNA replicatio 94.7 0.018 6.3E-07 47.7 3.2 23 168-190 52-74 (242)
427 1lv7_A FTSH; alpha/beta domain 94.6 0.02 6.7E-07 48.6 3.3 23 169-191 46-68 (257)
428 1oxx_K GLCV, glucose, ABC tran 94.6 0.01 3.6E-07 53.4 1.6 23 170-192 33-55 (353)
429 1cr0_A DNA primase/helicase; R 94.6 0.014 4.8E-07 50.8 2.3 21 170-190 37-57 (296)
430 1zuh_A Shikimate kinase; alpha 94.5 0.021 7.3E-07 45.0 3.1 23 168-190 7-29 (168)
431 2cvh_A DNA repair and recombin 94.5 0.022 7.6E-07 46.7 3.2 22 169-190 21-42 (220)
432 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.017 5.9E-07 53.9 2.7 24 168-191 138-161 (460)
433 4eaq_A DTMP kinase, thymidylat 94.4 0.023 7.7E-07 47.8 3.1 24 167-190 25-48 (229)
434 1svm_A Large T antigen; AAA+ f 94.4 0.022 7.4E-07 51.8 3.2 23 168-190 169-191 (377)
435 2chg_A Replication factor C sm 94.3 0.046 1.6E-06 44.4 4.9 22 170-191 40-61 (226)
436 1yqt_A RNAse L inhibitor; ATP- 94.3 0.021 7.1E-07 54.4 3.0 25 168-192 47-71 (538)
437 1uj2_A Uridine-cytidine kinase 94.3 0.025 8.4E-07 48.1 3.1 24 167-190 21-44 (252)
438 1n0w_A DNA repair protein RAD5 94.2 0.021 7.2E-07 47.7 2.6 23 169-191 25-47 (243)
439 1zcb_A G alpha I/13; GTP-bindi 94.2 0.025 8.5E-07 51.1 3.2 22 167-188 32-53 (362)
440 3r20_A Cytidylate kinase; stru 94.2 0.027 9.1E-07 47.6 3.2 22 168-189 9-30 (233)
441 1sxj_E Activator 1 40 kDa subu 94.2 0.038 1.3E-06 49.0 4.3 22 169-190 37-58 (354)
442 1f2t_A RAD50 ABC-ATPase; DNA d 94.2 0.026 8.8E-07 44.1 2.8 22 168-189 23-44 (149)
443 3ozx_A RNAse L inhibitor; ATP 94.1 0.03 1E-06 53.3 3.6 32 160-192 18-49 (538)
444 3b60_A Lipid A export ATP-bind 94.1 0.025 8.5E-07 54.3 3.1 23 170-192 371-393 (582)
445 2obl_A ESCN; ATPase, hydrolase 94.1 0.022 7.4E-07 51.1 2.5 24 169-192 72-95 (347)
446 3euj_A Chromosome partition pr 94.1 0.024 8.1E-07 53.2 2.8 22 169-190 30-51 (483)
447 3qf7_A RAD50; ABC-ATPase, ATPa 94.1 0.024 8.3E-07 51.1 2.8 21 169-189 24-44 (365)
448 1ltq_A Polynucleotide kinase; 94.0 0.027 9.3E-07 48.9 3.0 21 170-190 4-24 (301)
449 3b5x_A Lipid A export ATP-bind 94.0 0.027 9.3E-07 54.0 3.3 24 169-192 370-393 (582)
450 2yl4_A ATP-binding cassette SU 94.0 0.025 8.4E-07 54.5 2.9 23 170-192 372-394 (595)
451 1q3t_A Cytidylate kinase; nucl 93.9 0.033 1.1E-06 46.7 3.2 24 167-190 15-38 (236)
452 3qf4_B Uncharacterized ABC tra 93.9 0.028 9.5E-07 54.2 3.0 24 169-192 382-405 (598)
453 3co5_A Putative two-component 93.9 0.022 7.7E-07 43.9 2.0 23 169-191 28-50 (143)
454 3u61_B DNA polymerase accessor 93.8 0.56 1.9E-05 40.9 11.2 22 170-191 50-71 (324)
455 1qhl_A Protein (cell division 93.8 0.0093 3.2E-07 50.3 -0.5 22 170-191 29-50 (227)
456 3pfi_A Holliday junction ATP-d 93.8 0.038 1.3E-06 48.8 3.5 24 168-191 55-78 (338)
457 3d8b_A Fidgetin-like protein 1 93.8 0.15 5.1E-06 45.6 7.5 25 167-191 116-140 (357)
458 2qmh_A HPR kinase/phosphorylas 93.7 0.038 1.3E-06 45.6 3.1 25 167-191 33-57 (205)
459 3ake_A Cytidylate kinase; CMP 93.7 0.035 1.2E-06 45.2 2.9 21 170-190 4-24 (208)
460 3j16_B RLI1P; ribosome recycli 93.7 0.037 1.3E-06 53.5 3.5 25 168-192 103-127 (608)
461 3t15_A Ribulose bisphosphate c 93.7 0.034 1.2E-06 48.5 3.0 24 168-191 36-59 (293)
462 1t9h_A YLOQ, probable GTPase E 93.7 0.082 2.8E-06 46.5 5.5 45 245-293 84-129 (307)
463 3bk7_A ABC transporter ATP-bin 93.7 0.031 1.1E-06 54.0 2.9 25 168-192 117-141 (607)
464 2ce7_A Cell division protein F 93.7 0.37 1.3E-05 45.0 10.2 22 170-191 51-72 (476)
465 3zvl_A Bifunctional polynucleo 93.7 0.046 1.6E-06 50.2 3.9 25 167-191 257-281 (416)
466 4a82_A Cystic fibrosis transme 93.6 0.024 8.3E-07 54.4 2.0 23 170-192 369-391 (578)
467 2dpy_A FLII, flagellum-specifi 93.6 0.03 1E-06 51.9 2.5 24 169-192 158-181 (438)
468 3cf0_A Transitional endoplasmi 93.6 0.039 1.3E-06 48.2 3.2 24 168-191 49-72 (301)
469 3a8t_A Adenylate isopentenyltr 93.6 0.044 1.5E-06 48.9 3.5 23 169-191 41-63 (339)
470 3pxg_A Negative regulator of g 93.5 0.063 2.1E-06 50.1 4.7 37 150-191 188-224 (468)
471 2grj_A Dephospho-COA kinase; T 93.5 0.039 1.3E-06 45.1 2.9 25 167-191 11-35 (192)
472 3ozx_A RNAse L inhibitor; ATP 93.5 0.035 1.2E-06 52.8 2.9 23 170-192 296-318 (538)
473 1njg_A DNA polymerase III subu 93.5 0.034 1.2E-06 45.7 2.6 21 170-190 47-67 (250)
474 3hu3_A Transitional endoplasmi 93.4 0.18 6.1E-06 47.3 7.6 24 168-191 238-261 (489)
475 3qf4_A ABC transporter, ATP-bi 93.4 0.032 1.1E-06 53.7 2.5 23 170-192 371-393 (587)
476 3crm_A TRNA delta(2)-isopenten 93.4 0.044 1.5E-06 48.6 3.1 23 169-191 6-28 (323)
477 1yqt_A RNAse L inhibitor; ATP- 93.4 0.039 1.3E-06 52.5 3.0 24 169-192 313-336 (538)
478 3eie_A Vacuolar protein sortin 93.3 0.1 3.6E-06 45.9 5.5 24 168-191 51-74 (322)
479 1nlf_A Regulatory protein REPA 93.3 0.034 1.2E-06 47.9 2.3 23 168-190 30-52 (279)
480 3exa_A TRNA delta(2)-isopenten 93.3 0.047 1.6E-06 48.3 3.1 23 169-191 4-26 (322)
481 2v1u_A Cell division control p 93.3 0.085 2.9E-06 47.0 5.0 25 167-191 43-67 (387)
482 4fcw_A Chaperone protein CLPB; 93.2 0.11 3.6E-06 45.1 5.4 23 169-191 48-70 (311)
483 3bk7_A ABC transporter ATP-bin 93.2 0.044 1.5E-06 52.9 3.0 23 170-192 384-406 (607)
484 1p5z_B DCK, deoxycytidine kina 93.2 0.032 1.1E-06 47.7 1.9 25 167-191 23-47 (263)
485 2r62_A Cell division protease 93.2 0.038 1.3E-06 47.1 2.3 21 170-190 46-66 (268)
486 1sxj_C Activator 1 40 kDa subu 93.1 0.048 1.7E-06 48.3 3.1 22 170-191 48-69 (340)
487 1l8q_A Chromosomal replication 93.1 0.045 1.5E-06 48.1 2.8 24 168-191 37-60 (324)
488 1ofh_A ATP-dependent HSL prote 93.1 0.05 1.7E-06 47.1 3.1 22 169-190 51-72 (310)
489 2qby_A CDC6 homolog 1, cell di 93.1 0.044 1.5E-06 48.8 2.8 24 168-191 45-68 (386)
490 1a7j_A Phosphoribulokinase; tr 93.1 0.034 1.2E-06 48.5 2.0 23 168-190 5-27 (290)
491 2ocp_A DGK, deoxyguanosine kin 93.1 0.049 1.7E-06 45.8 2.9 23 169-191 3-25 (241)
492 2qgz_A Helicase loader, putati 93.0 0.11 3.7E-06 45.6 5.2 23 168-190 152-174 (308)
493 1d2n_A N-ethylmaleimide-sensit 93.0 0.047 1.6E-06 46.7 2.7 25 167-191 63-87 (272)
494 3foz_A TRNA delta(2)-isopenten 92.9 0.065 2.2E-06 47.2 3.5 23 169-191 11-33 (316)
495 3d3q_A TRNA delta(2)-isopenten 92.9 0.052 1.8E-06 48.5 2.9 23 169-191 8-30 (340)
496 3hws_A ATP-dependent CLP prote 92.9 0.14 4.8E-06 45.7 5.8 25 167-191 50-74 (363)
497 3j16_B RLI1P; ribosome recycli 92.9 0.052 1.8E-06 52.4 3.1 23 171-193 381-403 (608)
498 2zan_A Vacuolar protein sortin 92.8 0.15 5.1E-06 47.2 6.0 24 168-191 167-190 (444)
499 2dr3_A UPF0273 protein PH0284; 92.8 0.049 1.7E-06 45.4 2.5 20 170-189 25-44 (247)
500 2ga8_A Hypothetical 39.9 kDa p 92.8 0.062 2.1E-06 48.3 3.2 24 167-190 23-46 (359)
No 1
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.8e-48 Score=356.16 Aligned_cols=292 Identities=29% Similarity=0.585 Sum_probs=266.1
Q ss_pred cccccccCCCCCChHHHHHHHHhhhhhcCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHH
Q 040152 2 VQYNFKKITVVPNGKDIVDIILSRTQRQTPTVVHKGYSITRLRQFYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGD 81 (293)
Q Consensus 2 ~~~~f~~i~~v~~~~e~id~~~~r~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ 81 (293)
+.++|++||+|||++||+|++|+||+|++|+.+++++.+.|+|++|+++++.+++.+++.|.+++..+|.++++||||.+
T Consensus 1 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~ 80 (357)
T 2e87_A 1 MRNPFERMPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQE 80 (357)
T ss_dssp CCCTTTTCCCCCCHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHHHHHHhhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhhhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcC
Q 040152 82 LLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARL 161 (293)
Q Consensus 82 ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~ 161 (293)
+++.+.+.+++..+|.++.++......++.+|.+.++++.....+...++...+++.++++++...+..+++.++.+++.
T Consensus 81 l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 160 (357)
T 2e87_A 81 LVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDL 160 (357)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999887776777777888899999999999999888899999999999988
Q ss_pred CCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHH
Q 040152 162 PSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI 241 (293)
Q Consensus 162 ~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~ 241 (293)
+..+...++|+++|++|||||||+|+|++..+.+.+++++|.+...+....++..+.+|||||+.+.+.++.+.++.+.+
T Consensus 161 ~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 161 PVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp CCCCSSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 88777888999999999999999999999987778889999999988888888889999999998877777777777777
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.++...+|++++|+|++++++++...+..|+.++.....+.|+++|+||+|+
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 7777778999999999998877777777888888775558999999999996
No 2
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=3.3e-23 Score=177.53 Aligned_cols=140 Identities=57% Similarity=0.916 Sum_probs=108.1
Q ss_pred HHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCch
Q 040152 154 IRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDR 233 (293)
Q Consensus 154 ~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~ 233 (293)
......++|.++...++|+++|.+|||||||+|+|++..+.+.+++++|.+.......+++..+.+|||||+.+.+..++
T Consensus 15 ~~~~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 94 (228)
T 2qu8_A 15 ENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR 94 (228)
T ss_dssp -------CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC
T ss_pred hhheeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh
Confidence 34455678888888999999999999999999999999887778889999999888888888999999999987665555
Q ss_pred hHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 234 NIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 234 ~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..++...+..+...+|++++|+|++++.++.......|+..+.....+.|+++|+||+|+
T Consensus 95 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 95 NTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp CHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred hhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 555555566666778999999999999888866556788888775558999999999996
No 3
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=5.3e-22 Score=181.70 Aligned_cols=227 Identities=22% Similarity=0.175 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHH-HHHHhHhccCCch-----
Q 040152 51 VKYTQQNFFEKLSTIIDEF-PRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIA-KDYVKLLKYGDSL----- 123 (293)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~-p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~-~~~~~~~~~~~~~----- 123 (293)
++.+|.. +|++.+ +. +++|+. ..+++||-.++.++++..|++.|+..+..-. ..|..+.+.++..
T Consensus 66 l~p~q~~---~l~~~~-~~~~v~dr~----~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl~~~~~l~~~~~~i~~~g~ 137 (364)
T 2qtf_A 66 LKPRHFI---NIRREL-KGKEVLDKI----LLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKSKIGEQQGPLGA 137 (364)
T ss_dssp CCHHHHH---HHHHHH-TTCEEECHH----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred CCHHHHH---HHHHHh-CCCceeehH----hHHHHHHHhhCcccchhHHHHHHHHhhhchhhhhhhHHHHhcCCCCcCCc
Confidence 4445533 344433 24 566655 8899999999999999999999988665322 5565554433211
Q ss_pred --hhhhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccc
Q 040152 124 --YRCKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFT 201 (293)
Q Consensus 124 --~~~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~t 201 (293)
......++...+++..+.++ +..+...+...+ ........+.|+++|++|||||||+|+|++..+.+.+++++
T Consensus 138 ge~~~e~~~~~~~~~i~~l~~~----l~~~~~~r~~~r-~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~ 212 (364)
T 2qtf_A 138 GTYGVESTIKFYKRRINKLMKE----LESIKIFKEKSI-ESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFT 212 (364)
T ss_dssp ------CHHHHHHHHHHHHHHH----HHHHHC--------------CCEEEEECBTTSSHHHHHHHHHCC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCccc
Confidence 01112233333344333322 232222222211 11122234469999999999999999999998878889999
Q ss_pred eeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC--CCCHHHH-HHHHHHHhhc
Q 040152 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC--GYSIAQQ-AALFHSIKSL 278 (293)
Q Consensus 202 t~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~--~~~~~~~-~~~l~~l~~~ 278 (293)
|.++..+.+.+++..+.+|||||+....+.........++. ....+|++++|+|++++. ....... .+++.++..
T Consensus 213 T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~- 290 (364)
T 2qtf_A 213 TMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV- 290 (364)
T ss_dssp -CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC-
T ss_pred ccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc-
Confidence 99999999999998999999999866533221111112233 334579999999998853 1111111 123333321
Q ss_pred cCCCcEEEEEeccCC
Q 040152 279 FMNKPLIIVCNKTDL 293 (293)
Q Consensus 279 ~~~~piivV~NK~Dl 293 (293)
.+.|+++|+||+|+
T Consensus 291 -~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 291 -SGKPILVTLNKIDK 304 (364)
T ss_dssp -CSCCEEEEEECGGG
T ss_pred -CCCCEEEEEECCCC
Confidence 47899999999995
No 4
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.82 E-value=1.4e-19 Score=148.16 Aligned_cols=122 Identities=25% Similarity=0.340 Sum_probs=90.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
..+|+++|.+|||||||+|+|++.... +.+++++|.+...+.+.+++..+.+|||||+.+.... ..............
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE-VERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH-HHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH-HHHHHHHHHHHHHH
Confidence 458999999999999999999988754 6778899998888888888888999999998543211 11111111112345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++... .|+..+.... .+.|+++|+||+|+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~---~~~~~~~~~~~~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPA---EIWPEFIARLPAKLPITVVRNKADI 127 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHH---HHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred hCCEEEEEEECCCCCCHHHH---HHHHHHHHhcccCCCEEEEEECccC
Confidence 57999999999998887643 3444444332 46899999999995
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=8.1e-19 Score=156.69 Aligned_cols=122 Identities=23% Similarity=0.297 Sum_probs=89.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
..+|+++|.||||||||+|+|++.++. +++.++||.....+....++.++++|||||+.+... ..+............
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~-~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD-ALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS-HHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh-HHHHHHHHHHHHHHh
Confidence 457999999999999999999999886 567888998887777778888999999999975321 111111112223345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++. +..+. .+++.+.....+.|+++|+||+|+
T Consensus 86 ~ad~il~VvD~~~~~--~~~~~-~i~~~l~~~~~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPP--TPEDE-LVARALKPLVGKVPILLVGNKLDA 129 (301)
T ss_dssp SCSEEEEEEETTSCC--CHHHH-HHHHHHGGGTTTSCEEEEEECGGG
T ss_pred cCCEEEEEEECCCCC--ChHHH-HHHHHHHhhcCCCCEEEEEECccc
Confidence 579999999999863 33332 344566553347999999999996
No 6
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=7e-19 Score=153.60 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=89.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC-chhHHHHHHHHHhh--
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DRNIIEMCSITALA-- 245 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~-~~~~~e~~~~~~l~-- 245 (293)
++|+++|.+|||||||+|+|++....++++|++|.+...+.+.+++..+.+|||||+.+.... ..+..+......+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 589999999999999999999998888999999999999999999999999999999765431 00011111111222
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++. .....+...+.. .+.|+++|+||+|+
T Consensus 82 ~~~d~vi~VvDas~~-----~~~~~l~~~l~~--~~~pvilv~NK~Dl 122 (256)
T 3iby_A 82 LEYDCIINVIDACHL-----ERHLYLTSQLFE--LGKPVVVALNMMDI 122 (256)
T ss_dssp SCCSEEEEEEEGGGH-----HHHHHHHHHHTT--SCSCEEEEEECHHH
T ss_pred CCCCEEEEEeeCCCc-----hhHHHHHHHHHH--cCCCEEEEEEChhc
Confidence 557999999999872 333355566655 47999999999994
No 7
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=145.48 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=87.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|++..+.....++++.+.....+.+++ ..+.+|||||........ ..+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~ 78 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT---------STY 78 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC---------GGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH---------HHH
Confidence 457999999999999999999999988766777777777778888877 568999999964322111 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.....+.|+++|+||+|+
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl 125 (181)
T 3tw8_B 79 YRGTHGVIVVYDVTSAESFVNVK--RWLHEINQNCDDVCRILVGNKNDD 125 (181)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHCTTSEEEEEEECTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCCC
Confidence 44579999999999865544333 577777766668999999999996
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=9.8e-19 Score=156.70 Aligned_cols=124 Identities=27% Similarity=0.337 Sum_probs=93.4
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEec-CceEEEEeCCCCCCCCC-CchhHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYK-YLRYQVIDTPGILDRPF-EDRNIIEMCSIT 242 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~-~~~~~iiDTpG~~~~~~-~~~~~~e~~~~~ 242 (293)
+....|+++|.||||||||+|+|++.++. +++.+++|.....+....+ +..+.+|||||+.+... ...+........
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 34568999999999999999999999887 6788999999999988888 88999999999976431 111111112222
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+|++++|+|++++.+.... ..|+..+.. .+.|+++|+||+|+
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~--~~~~~~l~~--~~~pvilV~NK~Dl 134 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDE--EIYQNFIKP--LNKPVIVVINKIDK 134 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHH--HHHHHHTGG--GCCCEEEEEECGGG
T ss_pred HHhhcCCEEEEEEeCCCCCCchhH--HHHHHHHHh--cCCCEEEEEECccC
Confidence 334457999999999986544332 234677766 47899999999995
No 9
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=2e-18 Score=140.14 Aligned_cols=116 Identities=25% Similarity=0.367 Sum_probs=82.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc-hhHHHHHHHHHhh-
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED-RNIIEMCSITALA- 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~-~~~~e~~~~~~l~- 245 (293)
..+|+++|++|||||||+|+|++..+.+..++++|.+...+.+.+++..+++|||||+.+..... ...+.. ..+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---~~~~~ 79 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIAR---DYIIN 79 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHH---HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHH---HHHhc
Confidence 35899999999999999999999887777788888888888888888899999999987643221 111111 1111
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++. .....|+.++.. .+.|+++|+||+|+
T Consensus 80 ~~~~~~i~v~D~~~~-----~~~~~~~~~~~~--~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 80 EKPDLVVNIVDATAL-----ERNLYLTLQLME--MGANLLLALNKMDL 120 (165)
T ss_dssp HCCSEEEEEEETTCH-----HHHHHHHHHHHH--TTCCEEEEEECHHH
T ss_pred CCCCEEEEEecCCch-----hHhHHHHHHHHh--cCCCEEEEEEchHh
Confidence 257999999999862 222356666655 47999999999995
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=1.2e-18 Score=163.46 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=77.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc-hhHHHHHHHHHhhc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED-RNIIEMCSITALAH 246 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~-~~~~e~~~~~~l~~ 246 (293)
++|+++|.||||||||+|+|++.... +.+.|++|++...+...+++..+++|||||+....... ...+..++..+ ..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~-~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM-IR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH-HT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHH-HH
Confidence 57999999999999999999998865 78899999999999999999999999999986432111 12222233333 45
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++. +..+. .+...++. .++|+++|+||+|+
T Consensus 81 ~ad~il~V~D~~~~~--~~~d~-~i~~~l~~--~~~p~ilv~NK~D~ 122 (439)
T 1mky_A 81 EADLVLFVVDGKRGI--TKEDE-SLADFLRK--STVDTILVANKAEN 122 (439)
T ss_dssp TCSEEEEEEETTTCC--CHHHH-HHHHHHHH--HTCCEEEEEESCCS
T ss_pred hCCEEEEEEECCCCC--CHHHH-HHHHHHHH--cCCCEEEEEeCCCC
Confidence 579999999998754 33321 22233333 37899999999996
No 11
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.77 E-value=1.2e-18 Score=164.64 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=68.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHH---HHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS---ITA 243 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~---~~~ 243 (293)
..+|+++|.||||||||+|+|++.+.. ++++++||.+.....+.+++.++.+|||||+.+.. ..++... ...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~----~~ve~~gi~~~~~ 308 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG----EEIEHEGIRRSRM 308 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------------------------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch----hHHHHHHHHHHHh
Confidence 458999999999999999999998654 78899999999999999999999999999985421 1111111 122
Q ss_pred hhccCcEEEEEEeCCCCCCCCHH-HHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIA-QQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~-~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++++.++... ....++..+. +.|+++|+||+|+
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl 355 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDR 355 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTS
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCC
Confidence 34457999999999997765422 1224555443 6899999999996
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=2.6e-18 Score=137.78 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=78.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
++|+++|.+|||||||+|++.+..+. ....+++|.+.......+++..+.+|||||+.+.... ...+. .........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~-~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKW-EKKIQ-EKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSC-CHHHH-HHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccch-HHHHH-HHHHHHHHh
Confidence 58999999999999999999988765 5677788888888888888889999999998653211 11111 122334455
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++. +.... .+...+.. .+.|+++|+||+|+
T Consensus 80 ~~~~i~v~d~~~~~--~~~~~-~~~~~~~~--~~~p~ilv~nK~Dl 120 (161)
T 2dyk_A 80 AEVVLFAVDGRAEL--TQADY-EVAEYLRR--KGKPVILVATKVDD 120 (161)
T ss_dssp CSEEEEEEESSSCC--CHHHH-HHHHHHHH--HTCCEEEEEECCCS
T ss_pred CCEEEEEEECCCcc--cHhHH-HHHHHHHh--cCCCEEEEEECccc
Confidence 79999999999853 33321 23333333 37899999999996
No 13
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=1.3e-18 Score=153.29 Aligned_cols=119 Identities=19% Similarity=0.213 Sum_probs=90.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC-chhHHHHHHHHHh--
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE-DRNIIEMCSITAL-- 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~-~~~~~e~~~~~~l-- 244 (293)
.++|+++|.+|||||||+|+|++..+.+++++++|.+...+.+.+++..+.+|||||+.+.... .....+......+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 4689999999999999999999999888999999999999999998889999999999775421 1111111111112
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|+++. .....+...+.+ .+.|+++|+||+|+
T Consensus 83 ~~~~d~ii~VvD~~~~-----~~~~~~~~~l~~--~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 83 SGDADLLINVVDASNL-----ERNLYLTLQLLE--LGIPCIVALNMLDI 124 (274)
T ss_dssp HTCCSEEEEEEEGGGH-----HHHHHHHHHHHH--HTCCEEEEEECHHH
T ss_pred hcCCCEEEEEecCCCh-----HHHHHHHHHHHh--cCCCEEEEEECccc
Confidence 2457999999999872 333355555555 37999999999995
No 14
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=2.9e-18 Score=162.11 Aligned_cols=117 Identities=27% Similarity=0.381 Sum_probs=88.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCC-CCCC-CchhHHHHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL-DRPF-EDRNIIEMCSITAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~-~~~~-~~~~~~e~~~~~~l 244 (293)
..+|+++|.||||||||+|+|++.+.. ++++++||.+.....+.+++.++.+|||||+. +... .+...++ .+.. .
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~-~~~~-~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIE-RTLQ-E 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHH-HHHH-H
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHH-HHHH-H
Confidence 468999999999999999999998754 78999999999999999999999999999986 4321 1110011 1222 2
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++|+|+|++++.++.. .++++.+ .++|+++|+||+|+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~---~~il~~l----~~~piivV~NK~DL 362 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEED---RKILERI----KNKRYLVVINKVDV 362 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHH---HHHHHHH----TTSSEEEEEEECSS
T ss_pred hhcccEEEEEecCCCCCCHHH---HHHHHHh----cCCCEEEEEECccc
Confidence 344799999999998755422 2344433 37899999999996
No 15
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=3.9e-18 Score=149.02 Aligned_cols=117 Identities=25% Similarity=0.281 Sum_probs=90.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh-c
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA-H 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~-~ 246 (293)
.++|+++|.+|||||||+|+|++..+.+.++|++|.+...+.+..++..+.+|||||+.+....... +......+. .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~~~~~ 82 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID--EKIARDYLLKG 82 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH--HHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH--HHHHHHHHhhc
Confidence 4689999999999999999999999888899999999999999888889999999999765322111 111111121 4
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|+++.. ....|..++.. .+.|+++|+||+|+
T Consensus 83 ~~d~ii~V~D~t~~~-----~~~~~~~~l~~--~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 83 DADLVILVADSVNPE-----QSLYLLLEILE--MEKKVILAMTAIDE 122 (258)
T ss_dssp CCSEEEEEEETTSCH-----HHHHHHHHHHT--TTCCEEEEEECHHH
T ss_pred CCCEEEEEeCCCchh-----hHHHHHHHHHh--cCCCEEEEEECcCC
Confidence 579999999998732 23356666665 47999999999995
No 16
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.76 E-value=5e-18 Score=148.56 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=89.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh-
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL- 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l- 244 (293)
...+|+++|.+|||||||+|+|++..+. +.+++++|.......+.+++..+.+|||||+.+.........+. ....+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~-i~~~l~ 113 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALEL-IKGFLV 113 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHH-HHHHHh
Confidence 4579999999999999999999998863 67788888888888888899999999999997654332222211 11111
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC---CCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM---NKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~---~~piivV~NK~Dl 293 (293)
...+|++++|+|++... +...+ ..+++.+...+. ..|+++|+||+|+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELD-KQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHH-HHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHH-HHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 22469999999997754 55443 245655555432 2599999999996
No 17
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-18 Score=159.10 Aligned_cols=120 Identities=23% Similarity=0.415 Sum_probs=90.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.||||||||+|+|++....++++||||.++..+.+.+++.+++++||||+.+.+....+ +..+.+... +
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~-~g~~~l~~i-~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG-RGKQVIAVA-R 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C-HHHHHHHHH-H
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH-HHHHHHHHH-H
Confidence 45689999999999999999999999889999999999999999999999999999999876543322 222334333 4
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHH-HHHHHhhc---cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAA-LFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~-~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++. ...+ +..++... ...+|.++|+||+|.
T Consensus 149 ~ad~il~vvD~~~p~-----~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 149 TCNLLFIILDVNKPL-----HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HCSEEEEEEETTSHH-----HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred hcCccccccccCccH-----HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 479999999998742 2222 22333322 246789999999983
No 18
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=5.4e-18 Score=138.36 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=86.8
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
....++|+++|.+|||||||+++|++..+.....+++|.+.....+.+++..+.+|||||+.+..... ...
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------~~~ 75 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR---------ARG 75 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC---------CSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH---------HHH
Confidence 34678999999999999999999999888777777777777777788888899999999985432111 122
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.. . ...+.+..+.. .+.|+++|+||+|+
T Consensus 76 ~~~~d~~i~v~d~~~~~~--~-~~~~~l~~~~~--~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 76 AQVTDIVILVVAADDGVM--P-QTVEAINHAKA--ANVPIIVAINKMDK 119 (178)
T ss_dssp CCCCCEEEEEEETTCCCC--H-HHHHHHHHHGG--GSCCEEEEEETTTS
T ss_pred HhhCCEEEEEEECCCCCc--H-HHHHHHHHHHh--CCCCEEEEEECccC
Confidence 345799999999988532 2 22244554443 47899999999996
No 19
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=5.6e-18 Score=148.84 Aligned_cols=123 Identities=20% Similarity=0.293 Sum_probs=88.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh-
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL- 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l- 244 (293)
..++|+++|.+|+|||||+|+|++..+. +.+.+++|..........++..+.+|||||+.+........++ .+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~--~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALN--IIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHH--HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHH--HHHHHh
Confidence 4579999999999999999999998864 5667778877777777778889999999999664322222211 12211
Q ss_pred -hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCC---CcEEEEEeccCC
Q 040152 245 -AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMN---KPLIIVCNKTDL 293 (293)
Q Consensus 245 -~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~---~piivV~NK~Dl 293 (293)
...+|+++||+|++.. ++...+ ..++..+...+.. .|+++|+||+|+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~-~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHH-HHHHHHHHHHhCcccccCEEEEEECccc
Confidence 2346999999999764 455433 2566666554322 699999999996
No 20
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.76 E-value=2.6e-18 Score=142.24 Aligned_cols=117 Identities=22% Similarity=0.269 Sum_probs=83.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||||. +. +.......+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~--~~~~~~~~~ 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ------ER--FRKSMVQHY 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS------HH--HHTTTHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc------hh--hhhhhhHHH
Confidence 457999999999999999999998877655555555555566666665 46899999996 21 110112334
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+.++... ..+.|+++|+||+|+
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLP--AWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred hcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 45579999999999865543333 566666544 257999999999996
No 21
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=145.86 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=81.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCc--cceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHH--HHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYA--FTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIE--MCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~--~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e--~~~~~ 242 (293)
..++|+++|.+|||||||+|+|++..+.....+ ++|.........+++..+.||||||+.+.........+ ...+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999888766655 67888888888899999999999999875433221111 12222
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc---CCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF---MNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~---~~~piivV~NK~Dl 293 (293)
.....+|++|+|+|+++... ... .++..+...+ ...|+++|+||+|+
T Consensus 108 ~~~~~~~~~l~v~d~~~~~~-~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYTE-EEH---KATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp HTTTCCSEEEEEEETTCCSS-HHH---HHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred hcCCCCcEEEEEeeCCCCCH-HHH---HHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 33445699999999985322 212 3343333211 24699999999995
No 22
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=145.39 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=84.3
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
....+|+++|.+|||||||+++|++........++++.+.....+.+++. .+++|||||.... ...+ ...
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~~----~~~ 92 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA----GGWL----RDH 92 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG----GHHH----HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc----hhhh----HHH
Confidence 35679999999999999999999876554455566666666666667664 5689999998321 1111 122
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVP--ETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred hhccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEeechhc
Confidence 344579999999999876654443 5666665432 37899999999996
No 23
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.75 E-value=1.6e-18 Score=140.30 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=73.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+++|++........+.++.+.....+.+++. .+.+|||||..+.... ....+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW--------LQDHCL 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh--------hhhhhh
Confidence 358999999999999999999987766555555666666666667664 5789999998432110 011123
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVP--ETLLRLRAGRPHHDLPVILVGNKSDL 121 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred ccCCEEEEEEECCChHHHHHHH--HHHHHHHhcccCCCCCEEEEeeCcch
Confidence 3469999999999976554433 5566655443 37999999999996
No 24
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=4.4e-18 Score=152.36 Aligned_cols=122 Identities=13% Similarity=0.096 Sum_probs=88.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEe-cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~-~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|++++.... +++++++|.+...+...+ ++..+++|||||+.+. ...+.......+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF----MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH----HHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH----hhhhhhhHHHHHh
Confidence 468999999999999999999887433 556788899888888776 5567999999997211 0000001112334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHH-HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQ-AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~-~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++..... ..++.++.....+.|+++|+||+|+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl 127 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL 127 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccc
Confidence 56799999999999876655543 2456666655568999999999996
No 25
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.75 E-value=3.9e-18 Score=148.08 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=82.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCcc--ceeeeeEEEEEecCceEEEEeCCCCCCCCCCc----hhHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAF--TTKSLFVGHTDYKYLRYQVIDTPGILDRPFED----RNIIEMCS 240 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~--tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~----~~~~e~~~ 240 (293)
...+|+++|.+|||||||+|+|++..+....+++ +|.....+...+++..+.||||||+.+..... ...+. .+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~-~~ 98 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG-HC 98 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH-HH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH-HH
Confidence 4679999999999999999999999877554443 78888888888999999999999997543211 11111 11
Q ss_pred HHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc----CCCcEEEEEeccCC
Q 040152 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF----MNKPLIIVCNKTDL 293 (293)
Q Consensus 241 ~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~----~~~piivV~NK~Dl 293 (293)
+......+|++|+|+|++. +...+. .+++.+...+ .+.|+++|+||+|+
T Consensus 99 ~~~~~~~~d~il~V~d~~~---~~~~~~-~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR---FTAQDQ-QAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB---CCHHHH-HHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHhcCCCCCEEEEEEeCCC---CCHHHH-HHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 1222366799999999985 333322 3333333322 26799999999996
No 26
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=3.4e-18 Score=140.68 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=85.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....++++.+.....+..++ ..+.+|||||..+ . . .....+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~-~~~~~~ 79 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-----F---R-SVTRSY 79 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-----G---H-HHHHTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-----H---H-HHHHHH
Confidence 457999999999999999999999887666666666666666677766 4689999999721 1 1 122344
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl 127 (186)
T 2bme_A 80 YRGAAGALLVYDITSRETYNALT--NWLTDARMLASQNIVIILCGNKKDL 127 (186)
T ss_dssp STTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred HhcCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccc
Confidence 55679999999999865543333 466555543 257899999999996
No 27
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=5.1e-18 Score=140.21 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=81.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+|+|++..+. .. ..|.+.....+.+++..+++|||||+.+.... ...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~~~ 82 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HT--SPTIGSNVEEIVINNTRFLMWDIGGQESLRSS---------WNTYYT 82 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EE--ECCSCSSCEEEEETTEEEEEEECCC----CGG---------GHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cC--cCCCccceEEEEECCEEEEEEECCCCHhHHHH---------HHHHhc
Confidence 4579999999999999999999987764 22 22444555666778889999999998432111 122345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 83 NTEFVIVVVDSTDRERISVTR--EELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TCCEEEEEEETTCTTTHHHHH--HHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CCCEEEEEEeCCCHHHHHHHH--HHHHHHHhchhhCCCeEEEEEECCCC
Confidence 579999999999987665444 566666543 257999999999996
No 28
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=142.31 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=87.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|++..+.....++++.+.....+.+++ ..+.+|||||...... ....+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~ 85 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT---------ITSSY 85 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT---------THHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh---------hHHHH
Confidence 457999999999999999999999888777777777777777777777 4689999999732211 11223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ilv~nK~Dl 133 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDL 133 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred HhhCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccc
Confidence 45579999999999865544333 4666665442 47899999999996
No 29
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=7.7e-18 Score=148.22 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=87.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh-c
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA-H 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~-~ 246 (293)
.++|+++|.||||||||+|+|++....++++|++|.+...+.+.. +..+++|||||+.+....... +......+. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~--e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE--AKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH--HHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH--HHHHHHHHhcC
Confidence 468999999999999999999998877889999999888887776 778999999998764322111 111111222 2
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|+++. .....|..++.+ .+.|+++|+||+|+
T Consensus 80 ~~d~vi~V~D~t~~-----e~~~~~~~~l~~--~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 80 RADSILNVVDATNL-----ERNLYLTTQLIE--TGIPVTIALNMIDV 119 (272)
T ss_dssp CCSEEEEEEEGGGH-----HHHHHHHHHHHH--TCSCEEEEEECHHH
T ss_pred CCCEEEEEecCCch-----HhHHHHHHHHHh--cCCCEEEEEEChhh
Confidence 47999999999873 233356666655 48999999999995
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.75 E-value=3.5e-18 Score=137.90 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|.+..+.....+..+.+.....+.+++. .+.+|||||..+.... ...+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~~~~ 74 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI---------TKAY 74 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC---------CHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH---------HHHH
Confidence 4568999999999999999999998776544454455555566666553 6899999997432111 1223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.....+.|+++|+||+|+
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~piilv~nK~Dl 121 (168)
T 1z2a_A 75 YRGAQACVLVFSTTDRESFEAIS--SWREKVVAEVGDIPTALVQNKIDL 121 (168)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHHCSCCEEEEEECGGG
T ss_pred hcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccc
Confidence 44579999999999865443322 566666554468999999999995
No 31
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=4.6e-18 Score=139.83 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=81.0
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
....+|+++|.+|||||||+|+|++..+. .+ ..|.+.....+.+++..+.+|||||+.+... ....+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~ 86 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVINNTRFLMWDIGGQESLRS---------SWNTYY 86 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCE--EE-ECCSSSSCEEEEETTEEEEEEEESSSGGGTC---------GGGGGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCcCceeeEEEEECCEEEEEEECCCCHhHHH---------HHHHHh
Confidence 45679999999999999999999998772 11 1233344556677788899999999833211 112334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 87 ~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRERISVTR--EELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp TTCCEEEEEEETTCTTTHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ccCCEEEEEEECCCHHHHHHHH--HHHHHHHhChhhCCCeEEEEEECCCc
Confidence 5579999999999976655443 455555433 357999999999996
No 32
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.74 E-value=6.9e-18 Score=137.59 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=81.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|++++..+.....+..+.+.....+.+++. .+.+|||||... . . .....+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----~---~-~~~~~~ 76 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-----F---R-SLRTPF 76 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-----G---H-HHHGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh-----h---h-hhHHHH
Confidence 4568999999999999999999998876555555566666666677664 689999999721 1 1 122344
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-----CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-----MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-----~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 128 (177)
T 1wms_A 77 YRGSDCCLLTFSVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVILGNKIDI 128 (177)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred HhcCCEEEEEEECcCHHHHHHHH--HHHHHHHHHccccccCCCcEEEEEECCcc
Confidence 55579999999999865443332 4555554332 47899999999996
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=141.78 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=79.6
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
.....+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||||.. ... ....
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----~~~----~~~~ 93 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE-----RFN----SITS 93 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG-----GGH----HHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH-----HHH----HHHH
Confidence 34557899999999999999999999887655555556666666777766 368999999972 111 1122
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
.+...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilV~NK~Dl 143 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLP--KWMKMIDKYASEDAELLLVGNKLDC 143 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccc
Confidence 3344579999999999865544333 4555555442 47899999999996
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=5.8e-18 Score=136.27 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=79.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|.+..+. ..+.+++.......+.+++. .+.+|||||..+. . .....+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~----~~~~~~~ 73 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-----A----AIRDNYF 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-----H----HHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-----H----HHHHHHh
Confidence 468999999999999999999988763 34444555544555556554 6899999997321 1 1112334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 74 RSGEGFLCVFSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred hcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECccc
Confidence 4579999999999876544333 5566655543 37999999999996
No 35
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=2e-17 Score=136.38 Aligned_cols=117 Identities=25% Similarity=0.380 Sum_probs=89.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc-hhHHHHHHHHHhh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED-RNIIEMCSITALA 245 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~-~~~~e~~~~~~l~ 245 (293)
...+|+++|.+|||||||+|+|++..+.+..++++|.+...+.+.+++..+.+|||||+.+..... ...+.. ..+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~~~~ 82 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIAR---DYII 82 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHH---HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHH---HHHh
Confidence 456899999999999999999999887778888889888888888888899999999986643221 111111 1111
Q ss_pred -ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 -HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 -~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++ ......|+..+.. .+.|+++|+||+|+
T Consensus 83 ~~~~~~~i~v~d~~~-----~~~~~~~~~~~~~--~~~piilv~nK~Dl 124 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA-----LERNLYLTLQLME--MGANLLLALNKMDL 124 (188)
T ss_dssp HHCCSEEEEEEEGGG-----HHHHHHHHHHHHT--TTCCEEEEEECHHH
T ss_pred ccCCCEEEEEecchh-----HHHHHHHHHHHHh--cCCCEEEEEEhhhc
Confidence 23699999999985 2333466776665 57899999999995
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=3.2e-18 Score=138.37 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=79.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+.....+.++.+.....+.+++. .+.+|||||..+..... ..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~---------~~~~ 73 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT---------TAYY 73 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC---------HHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH---------HHHh
Confidence 468999999999999999999998876555566666666666666653 68999999974322111 1233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIK--QWFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccC
Confidence 4569999999999865443332 5666665542 47899999999996
No 37
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=9.4e-18 Score=138.25 Aligned_cols=113 Identities=17% Similarity=0.253 Sum_probs=81.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+|++++.. . ..+. .|.+.....+.+++..+++|||||+.+ .. ........
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~--------~~-~~~~~~~~ 84 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-V-DTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKS--------LR-SYWRNYFE 84 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-C-SSCC-CCSSEEEEEEEETTEEEEEEEECCSHH--------HH-TTGGGGCT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-C-Cccc-ccCccceEEEEECCEEEEEEECCCCHh--------HH-HHHHHHhc
Confidence 46799999999999999999999877 2 2222 244455667777888999999999721 11 11123445
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 85 STDGLIWVVDSADRQRMQDCQ--RELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp TCSEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCCEEEEEEECcCHHHHHHHH--HHHHHHHhChhcCCCcEEEEEeCccC
Confidence 579999999999976654433 455555432 257999999999996
No 38
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=1.8e-17 Score=145.74 Aligned_cols=117 Identities=24% Similarity=0.321 Sum_probs=90.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh-hc
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL-AH 246 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l-~~ 246 (293)
.++|+++|.+|||||||+|+|++..+.+.+++++|.+...+.+.+++..+.+|||||+.+......... .....+ ..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~--~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDEL--IARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHH--HHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHH--HHHHhhhcc
Confidence 468999999999999999999999888888999999999999999999999999999977543322111 111111 24
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCC-CcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMN-KPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~-~piivV~NK~Dl 293 (293)
.+|++++|+|+++. ...+.+..++.. .+ .|+++|+||+|+
T Consensus 81 ~~d~vi~v~D~~~~-----~~~~~~~~~~~~--~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 81 NADVIVDIVDSTCL-----MRNLFLTLELFE--MEVKNIILVLNKFDL 121 (271)
T ss_dssp CCSEEEEEEEGGGH-----HHHHHHHHHHHH--TTCCSEEEEEECHHH
T ss_pred CCcEEEEEecCCcc-----hhhHHHHHHHHh--cCCCCEEEEEEChhc
Confidence 57999999999873 233345555554 34 999999999994
No 39
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=4.7e-18 Score=141.34 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=81.0
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
...++|+++|.+|||||||+++|++..+....+.. |.+.....+...+..+++|||||+.... .....+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~ 84 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFR---------GLWETYY 84 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGG---------GGGGGGC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHH---------HHHHHHH
Confidence 45679999999999999999999998876522322 3445566667778889999999983211 1112334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc---------CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF---------MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~---------~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 139 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVK--SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHH--HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred hcCCEEEEEEECCcHHHHHHHH--HHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence 5579999999999977665443 4555544320 27899999999996
No 40
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=5.8e-18 Score=142.42 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=85.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|++..+.....++++.+.....+.+++ ..+.+|||||....... ...+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~~~~ 89 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI---------TTAY 89 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC---------CHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH---------HHHH
Confidence 457999999999999999999999887666666667677777777777 46899999997332111 1223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 90 ~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 90 YRGAMGIILVYDVTDERTFTNIK--QWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCC
Confidence 34579999999999865443332 5666665433 36899999999996
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.74 E-value=1.6e-17 Score=140.92 Aligned_cols=122 Identities=15% Similarity=0.100 Sum_probs=85.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc--ccccCccceeeeeEEEEE-ecCceEEEEeCCCCCCCCCCc--hhHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV--DVQPYAFTTKSLFVGHTD-YKYLRYQVIDTPGILDRPFED--RNIIEMCSI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~--~~~~~~~tt~~~~~~~~~-~~~~~~~iiDTpG~~~~~~~~--~~~~e~~~~ 241 (293)
..++|+++|.+|||||||+|+|++... .+.+.+++|......... .++..+.||||||+.+..... ...+.....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 567999999999999999999999873 467788888887666655 556789999999986643221 111111111
Q ss_pred HHh--hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TAL--AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l--~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+ ...+|++++|+|++++. .... ..++..+.. .+.|+++|+||+|+
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~--~~~~-~~~~~~l~~--~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPL--TELD-RRMIEWFAP--TGKPIHSLLTKCDK 156 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC--CHHH-HHHHHHHGG--GCCCEEEEEECGGG
T ss_pred HHHhcCcCcCEEEEEEeCCCCC--CHHH-HHHHHHHHh--cCCCEEEEEecccc
Confidence 111 22258899999999843 3332 356666665 47899999999996
No 42
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.74 E-value=7.6e-18 Score=137.70 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=78.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||++++++..+.. +..|+.+.....+.+++. .+++|||||... . .+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~---------~~ 69 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---------KF 69 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H---------HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h---------HH
Confidence 45799999999999999999999988753 333333444455555553 578999999732 1 12
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQA-ALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.....+ .++..+.... .+.|+++|+||+|+
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3346999999999997766554432 2444444321 47899999999996
No 43
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=139.83 Aligned_cols=115 Identities=19% Similarity=0.253 Sum_probs=83.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|.+..+ ...+++++.......+.+++. .+.+|||||..+. .. ....+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~----~~~~~ 82 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-----AA----IRDNY 82 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-----HH----HHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh-----HH----HHHHH
Confidence 457999999999999999999998876 344555665555566666664 6899999997432 11 11233
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred HhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 44579999999999876554433 5666665543 37899999999996
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=2.2e-18 Score=140.72 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=81.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC---ceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY---LRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~---~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...+|+++|.+|||||||+++|++..+.....+.++.+.....+.+++ ..+++|||||....... ...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~---------~~~ 75 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM---------LDK 75 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT---------HHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch---------hhH
Confidence 457999999999999999999998876543334444566666777765 57899999997433211 122
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc---CCCc-EEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF---MNKP-LIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~---~~~p-iivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+..+.... .+.| +++|+||+|+
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~iilv~nK~Dl 127 (178)
T 2hxs_A 76 YIYGAQGVLLVYDITNYQSFENLE--DWYTVVKKVSEESETQPLVALVGNKIDL 127 (178)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred HHhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence 345579999999999865543332 4555554421 2456 8999999996
No 45
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=9.6e-18 Score=135.83 Aligned_cols=113 Identities=21% Similarity=0.301 Sum_probs=82.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+|++.+..+.. .. .|.+.....+.+++..+.+|||||+.... .....+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~~~~ 73 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TI--PTIGFNVETVTYKNLKFQVWDLGGLTSIR---------PYWRCYYS 73 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CC--CCSSEEEEEEEETTEEEEEEEECCCGGGG---------GGGGGGCT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cC--CcCccceEEEEECCEEEEEEECCCChhhh---------HHHHHHhc
Confidence 45799999999999999999999877632 22 24455666777788899999999973211 11123345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .++..+... ..+.|+++|+||+|+
T Consensus 74 ~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 74 NTDAVIYVVDSCDRDRIGISK--SELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp TCSEEEEEEETTCCTTHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHhchhhCCCEEEEEEECCCC
Confidence 579999999999987665443 455554332 257999999999996
No 46
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.74 E-value=1.1e-17 Score=140.26 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=86.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+++|.+..+.....++.+.+.....+.+++. .+.+|||||..+..... ..+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------~~~ 77 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT---------SSY 77 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC---------GGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH---------HHh
Confidence 3569999999999999999999998876655666666666666777664 68999999975432111 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 78 ~~~~d~vilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 125 (206)
T 2bcg_Y 78 YRGSHGIIIVYDVTDQESFNGVK--MWLQEIDRYATSTVLKLLVGNKCDL 125 (206)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred ccCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCC
Confidence 44579999999999866544333 5666665542 47899999999996
No 47
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.74 E-value=3.5e-18 Score=139.66 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=77.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---CceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...+|+++|.+|||||||+++|++..+.....+..+.+.....+.++ ...+.+|||||..... .....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 77 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ---------SLGVA 77 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh---------hhhHH
Confidence 45799999999999999999999988765545555555666666655 2468999999963211 11123
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-----CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-----MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-----~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASSFENIK--SWRDEFLVHANVNSPETFPFVILGNKIDA 130 (182)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHHCCSCTTTCCEEEEEECTTS
T ss_pred HhhcCCEEEEEEECCChHHHHHHH--HHHHHHHHHhcccCcCCCcEEEEEECCcc
Confidence 445579999999999865443332 4555554332 47899999999996
No 48
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=1.5e-17 Score=137.69 Aligned_cols=114 Identities=17% Similarity=0.267 Sum_probs=81.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+|+|++..+.....+ |.+.....+...+..+.+|||||.. . .. .....+..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~------~--~~-~~~~~~~~ 89 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQP------R--FR-SMWERYCR 89 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETTEEEEEEEECCSH------H--HH-TTHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEEEeCCEEEEEEECCCCH------h--HH-HHHHHHHc
Confidence 457999999999999999999998877533322 3344445566778889999999972 1 11 11223345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASK--NELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHhCcccCCCCEEEEEECCCC
Confidence 579999999999876554433 455555432 257999999999996
No 49
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.73 E-value=1.9e-17 Score=136.46 Aligned_cols=114 Identities=16% Similarity=0.252 Sum_probs=80.8
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
....+|+++|.+|||||||++++.+..+.. + ..|.+.....+.+++..+.+|||||+.. .. .....+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~--~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~-----~~----~~~~~~~ 81 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH--I-TPTQGFNIKSVQSQGFKLNVWDIGGQRK-----IR----PYWRSYF 81 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE--E-EEETTEEEEEEEETTEEEEEEECSSCGG-----GH----HHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc--c-cCcCCeEEEEEEECCEEEEEEECCCCHH-----HH----HHHHHHh
Confidence 457899999999999999999999886531 1 1233344556677788899999999721 11 1123344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEETG--QELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHHHH--HHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred CCCCEEEEEEECcCHHHHHHHH--HHHHHHHhChhhcCCCEEEEEECcCc
Confidence 5679999999999876654433 455554332 257899999999996
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.73 E-value=9.5e-18 Score=136.71 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=80.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+.++.+.....+..++ ..+.+|||||..+. . .....+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~----~~~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF-----R----AVTRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT-----C----HHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh-----h----hhHHHH
Confidence 457999999999999999999998887543333333344444455554 46899999996321 1 112233
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl 132 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLS--SWLTDARNLTNPNTVIILIGNKADL 132 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred hccCCEEEEEEeCcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccc
Confidence 44579999999999865443332 5666665543 57899999999996
No 51
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=1.7e-17 Score=133.62 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=80.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|||||||++++++..+.. ..| |.+.....+.+++..+++|||||+.+ . . .....+...+|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~-----~---~-~~~~~~~~~~d 69 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDK-----I---R-PLWRHYFQNTQ 69 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-CCC--CSSCCEEEEECSSCEEEEEECCCCGG-----G---H-HHHHHHTTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-ccC--cCceeEEEEEECCEEEEEEEcCCChh-----h---H-HHHHHHhccCC
Confidence 79999999999999999999877642 222 44455666777788899999999821 1 1 11233455679
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 70 ~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl 113 (164)
T 1r8s_A 70 GLIFVVDSNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDL 113 (164)
T ss_dssp EEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHhchhhcCCeEEEEEECcCC
Confidence 999999999976655433 556655432 247899999999996
No 52
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.73 E-value=5.8e-18 Score=144.10 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=79.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
+.++|+++|.+|||||||+++++...+.....|....+........++. .++||||+|+.... .....+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~---------~l~~~~ 82 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR---------SLIPSY 82 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG---------GGHHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh---------hHHHHH
Confidence 3579999999999999999999988876444443344444445555554 57899999983321 111335
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+||
T Consensus 83 ~~~a~~~ilv~di~~~~Sf~~i~--~~~~~i~~~~~~~~piilVgNK~Dl 130 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNSFQQTT--KWIDDVRTERGSDVIIMLVGNKTDL 130 (216)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHTTSSEEEEEEECTTC
T ss_pred hccccEEEEEeecchhHHHHHHH--HHHHHHHHhcCCCCeEEEEeeccch
Confidence 56689999999999987776554 566666543 357899999999996
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=8.2e-18 Score=137.51 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=80.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc-ccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV-QPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~-~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...+|+++|.+|||||||+|+|++..+.. ...+.++.+........++. .+++|||||..... .....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR---------SVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH---------HHHHH
Confidence 45799999999999999999999988753 33444555555555566654 68999999973211 11123
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 128 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQ--AWLTEIHEYAQHDVALMLLGNKVDS 128 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECCST
T ss_pred HccCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECccc
Confidence 345579999999999865443332 5666665543 57899999999996
No 54
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=8.6e-18 Score=135.67 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=81.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|++.+..+.....+..+.+.......+++. .+.+|||||..+. .. ....+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~----~~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF-----AS----LAPXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----GG----GHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh-----hh----hhhhhh
Confidence 358999999999999999999988876544455555555555556543 6899999997321 11 112334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl 120 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKAR--HWVKELHEQASKDIIIALVGNKIDX 120 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred ccCcEEEEEEecCChHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCCc
Confidence 5579999999999865544333 5666665442 57899999999996
No 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=137.35 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=72.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+... ++.+..+.....+.+++. .+++|||||..... .. .....+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---~~----~~~~~~~ 75 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD---KS----WSQESCL 75 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC----------C----HHHHHTT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccc---hh----hhHHhhc
Confidence 46899999999999999999998876522 222222333445556554 57899999984310 01 1113345
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~piilv~NK~Dl 123 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESAS--ELRIQLRRTHQADHVPIILVGNKADL 123 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHH--HHHHHHHHCC----CCEEEEEECTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhhccCCCCEEEEEEChhh
Confidence 5579999999999876554443 456666543 247899999999996
No 56
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.73 E-value=2.2e-18 Score=141.58 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+.....++++.+.....+.+++ ..+.+|||||..+.. .....+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~ 77 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAY 77 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh---------hhHHHH
Confidence 356899999999999999999998877655555556666666667766 568999999973221 011223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 125 (183)
T 2fu5_C 78 YRGAMGIMLVYDITNEKSFDNIR--NWIRNIEEHASADVEKMILGNKCDV 125 (183)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred HhcCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccC
Confidence 44579999999999866544333 567666654 247899999999996
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=9.5e-18 Score=139.39 Aligned_cols=114 Identities=20% Similarity=0.245 Sum_probs=80.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--------------------------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-------------------------------- 214 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-------------------------------- 214 (293)
...+|+++|.+|||||||+|+|++..+.....+.++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999887544444444444444455443
Q ss_pred -------ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEE
Q 040152 215 -------LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIV 287 (293)
Q Consensus 215 -------~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV 287 (293)
..+.+|||||..+... ....+...+|++++|+|++++.++.... .|+..+.... +.|+++|
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~~d~~i~v~D~~~~~s~~~~~--~~~~~i~~~~-~~piilv 153 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS---------IVPLYYRGATCAIVVFDISNSNTLDRAK--TWVNQLKISS-NYIIILV 153 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT---------THHHHHTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHS-CCEEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHH---------HHHHHhcCCCEEEEEEECCCHHHHHHHH--HHHHHHHhhC-CCcEEEE
Confidence 5789999999633211 1122344579999999999865543332 5677766543 4899999
Q ss_pred EeccC
Q 040152 288 CNKTD 292 (293)
Q Consensus 288 ~NK~D 292 (293)
+||+|
T Consensus 154 ~NK~D 158 (208)
T 3clv_A 154 ANKID 158 (208)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 99999
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.73 E-value=1.4e-17 Score=133.89 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=78.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|++.+..+.. .+..++.........+++. .+.+|||||..+. .. ....+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----~~----~~~~~~ 72 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-----AS----MRDLYI 72 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-----HH----HHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchhh-----HH----HHHHHh
Confidence 4689999999999999999999887643 3334444444555566654 4899999997322 11 112233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 73 KNGQGFILVYSLVNQQSFQDIK--PMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred ccCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 4469999999999865543332 4555554432 47999999999995
No 59
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.73 E-value=7.1e-18 Score=158.70 Aligned_cols=115 Identities=30% Similarity=0.422 Sum_probs=80.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHH---HHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS---ITA 243 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~---~~~ 243 (293)
..+|+++|+||||||||+|+|++.+.. +.+.+++|.+.....+.+++.++.+|||||+.+.. +.++... ...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~----~~ve~~gi~~~~~ 299 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS----DQVEKIGVERSRQ 299 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------------------------C
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch----hHHHHHHHHHHhh
Confidence 458999999999999999999987654 77889999999888889999999999999985421 1111111 122
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++++.+ ... ..++..+. ..|+++|+||+|+
T Consensus 300 ~~~~aD~vl~VvD~s~~~~--~~~-~~i~~~l~----~~piivV~NK~Dl 342 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWT--TGD-QEIYEQVK----HRPLILVMNKIDL 342 (462)
T ss_dssp CCCSCSEEEEEEETTTCSC--HHH-HHHHHHHT----TSCEEEEEECTTS
T ss_pred hhhcCCEEEEEeccCCCCC--HHH-HHHHHhcc----CCcEEEEEECCCC
Confidence 3345799999999998543 332 25565553 4799999999996
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=139.37 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
....+|+++|.+|||||||+++|++..+ ...+.+|+.......+..++. .+.+|||||+....... ..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~ 87 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR---------PL 87 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG---------GG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh---------Hh
Confidence 3567999999999999999999998875 345555665555556666664 56799999985432111 12
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... ..|+..+.....+.|+++|+||+|+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVS-EKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHH-HTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred hcCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEECHhh
Confidence 345579999999999876544332 1467666665568999999999996
No 61
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=4.3e-18 Score=137.77 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=80.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|++++..+.....+..+.+.....+.+++. .+.+|||||..+.. .....+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~ 75 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH---------ALGPIY 75 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh---------hhHHHH
Confidence 3568999999999999999999988876555555555555555666554 57899999973211 111223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl 123 (170)
T 1z08_A 76 YRDSNGAILVYDITDEDSFQKVK--NWVKELRKMLGNEICLCIVGNKIDL 123 (170)
T ss_dssp STTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHGGGSEEEEEEECGGG
T ss_pred hccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECccc
Confidence 44579999999999865544333 5666655432 47899999999996
No 62
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=3e-18 Score=160.58 Aligned_cols=122 Identities=22% Similarity=0.224 Sum_probs=84.4
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCc--hhHHH-HHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED--RNIIE-MCSI 241 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~--~~~~e-~~~~ 241 (293)
....+|+++|.+|||||||+|+|++.... ++++++||.+.....+.+++..+++|||||+.+..... .+.+. ..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35679999999999999999999998875 78889999999988999999999999999987654311 01111 1122
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. ...+|++++|+|++++.++. + ..|+..+.. .+.|+++|+||+|+
T Consensus 253 ~~-~~~ad~~llv~D~~~~~s~~--~-~~~~~~~~~--~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 253 KA-IDRSEVVAVVLDGEEGIIEQ--D-KRIAGYAHE--AGKAVVIVVNKWDA 298 (436)
T ss_dssp HH-HHHCSEEEEEEETTTCCCHH--H-HHHHHHHHH--TTCEEEEEEECGGG
T ss_pred HH-HHhCCEEEEEEcCCcCCcHH--H-HHHHHHHHH--cCCcEEEEEECccC
Confidence 22 33479999999999865433 2 356666655 58999999999996
No 63
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.73 E-value=2.3e-17 Score=134.66 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=81.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...++|+++|.+|||||||+|+|++..+. ..+.+|+.......+.+++. .+.+|||||..+..... ..
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~---------~~ 76 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR---------EQ 76 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH---------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH---------HH
Confidence 35679999999999999999999988663 34555555555566666654 67899999975432111 12
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQSFNEVG--KLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred HHhhCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 233469999999999865544333 455555322 247899999999996
No 64
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=9.8e-18 Score=140.55 Aligned_cols=116 Identities=13% Similarity=0.186 Sum_probs=78.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+.....+..+.+.....+.+++ ..+++|||||.. ... .....+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~----~~~~~~ 98 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE-----RFR----TITQSY 98 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCG-----GGH----HHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH-----hHH----HHHHHH
Confidence 357999999999999999999998887544434334455566666666 478999999972 111 112334
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl 146 (201)
T 2hup_A 99 YRSANGAILAYDITKRSSFLSVP--HWIEDVRKYAGSNIVQLLIGNKSDL 146 (201)
T ss_dssp HTTCSEEEEEEETTBHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred HhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCcc
Confidence 45679999999999865543332 5676666543 57899999999996
No 65
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=2.1e-17 Score=135.49 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=81.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|++..+ ...+.+++..........++. .+++|||||+.+..... ..+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------~~~ 74 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP---------QTY 74 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC---------GGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH---------HHH
Confidence 356999999999999999999997775 344445555555666666663 56899999985542111 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 75 SIDINGYILVYSVTSIKSFEVIK--VIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHC----CCEEEEEECTTC
T ss_pred HhcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 44579999999999876554443 4555554432 47899999999996
No 66
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.73 E-value=1.4e-17 Score=136.71 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=81.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+. ..+++++.......+.+++. .+.+|||||..+. .. ....+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~----~~~~~ 86 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-----AA----IRDNY 86 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-----HH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEEEEEECCEEEEEEEEECCCCccc-----HH----HHHHH
Confidence 4569999999999999999999988763 34555555555555566654 6899999997432 11 11233
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEMESFAATA--DFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred hccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 44579999999999865544333 5566655543 37899999999996
No 67
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=3.7e-17 Score=135.57 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHH-HHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMC-SITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~-~~~~ 243 (293)
..++|+++|.+|||||||+|+|++..+. ..+.+++|....... . +..+.+|||||+.+............ ....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 5689999999999999999999988743 455566666554432 2 34799999999765433221111111 1222
Q ss_pred hhccC---cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLR---SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~---d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+...+ |++++|+|++++.++... .++..+.. .+.|+++|+||+|+
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~~~--~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDV---QMYEFLKY--YGIPVIVIATKADK 146 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH---HHHHHHHH--TTCCEEEEEECGGG
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCEEEEEECccc
Confidence 22333 899999999986544332 23344433 47899999999996
No 68
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=7.5e-18 Score=157.91 Aligned_cols=119 Identities=22% Similarity=0.291 Sum_probs=74.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
++|+++|.||||||||+|+|++.... +.+.+++|++...+...+++..+++|||||+..........+..++..+ ...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~-~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA-MDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH-HHh
Confidence 58999999999999999999998765 6788999999999999999999999999998532211111222223233 345
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|++++|+|++++.+ ..+. .+...++. .++|+++|+||+|+
T Consensus 83 ad~il~vvD~~~~~~--~~d~-~~~~~l~~--~~~pvilv~NK~D~ 123 (436)
T 2hjg_A 83 ADVIIFMVNGREGVT--AADE-EVAKILYR--TKKPVVLAVNKLDN 123 (436)
T ss_dssp CSEEEEEEETTTCSC--HHHH-HHHHHHTT--CCSCEEEEEECCCC
T ss_pred CCEEEEEEeCCCCCC--HHHH-HHHHHHHH--cCCCEEEEEECccC
Confidence 799999999988544 3332 34444544 57999999999996
No 69
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.73 E-value=1.4e-17 Score=139.29 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=78.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+..+|+++|.+|||||||++++.+..+.. +. .|.+...+.+.+++..+++|||||+...... ...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~-~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------~~~~~~ 91 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ--HV-PTLHPTSEELTIAGMTFTTFDLGGHIQARRV---------WKNYLP 91 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCG---------GGGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc--cC-CCCCceeEEEEECCEEEEEEECCCcHhhHHH---------HHHHHh
Confidence 45689999999999999999999877632 21 2444456777888889999999997432211 112344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+.++... ..+.|+++|+||+|+
T Consensus 92 ~~d~~i~v~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 138 (198)
T 1f6b_A 92 AINGIVFLVDCADHERLLESK--EELDSLMTDETIANVPILILGNKIDR 138 (198)
T ss_dssp GCSEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHhCcccCCCcEEEEEECCCc
Confidence 579999999999976655443 556655432 257999999999996
No 70
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=2.4e-17 Score=136.97 Aligned_cols=113 Identities=14% Similarity=0.248 Sum_probs=81.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+..+|+++|.+|||||||++++++..+.. + ..|.+...+.+.+++..+.+|||||+...... ...+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~~~ 89 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT--L-QPTWHPTSEELAIGNIKFTTFDLGGHIQARRL---------WKDYFP 89 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC--C-CCCCSCEEEEEEETTEEEEEEECCCSGGGTTS---------GGGGCT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc--c-ccCCCCCeEEEEECCEEEEEEECCCCHHHHHH---------HHHHHh
Confidence 34589999999999999999999887642 2 23455567778888889999999998432111 112344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+.++... ..+.|+++|+||+|+
T Consensus 90 ~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~NK~Dl 136 (190)
T 1m2o_B 90 EVNGIVFLVDAADPERFDEAR--VELDALFNIAELKDVPFVILGNKIDA 136 (190)
T ss_dssp TCCEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred cCCEEEEEEECCChHHHHHHH--HHHHHHHcchhhcCCCEEEEEECCCC
Confidence 579999999999977655443 455555432 257999999999996
No 71
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.72 E-value=1.6e-17 Score=133.85 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=76.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|.+..+.. .+..|+..........++ ..+.+|||||..+... + ...+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----~----~~~~~ 72 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----M----RDLYM 72 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC-SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----H----HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-----H----HHHHh
Confidence 4589999999999999999999877643 333344333334444443 3589999999743321 1 11233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 73 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1c1y_A 73 KNGQGFALVYSITAQSTFNDLQ--DLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhhCcCCCcEEEEEECccc
Confidence 3469999999999865544333 455554432 247999999999996
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=2.5e-17 Score=135.56 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=80.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCce--EEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+ ...+++++.+........++.. +.+|||||..+.... ...+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~ 72 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM---------RDQY 72 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT---------HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH---------HHHH
Confidence 356899999999999999999998876 4455566666666666666654 678999997443211 1123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~i~v~nK~Dl 121 (189)
T 4dsu_A 73 MRTGEGFLCVFAINNTKSFEDIH--HYREQIKRVKDSEDVPMVLVGNKCDL 121 (189)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred HhcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECccC
Confidence 33469999999999865544333 455555443 247899999999996
No 73
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.6e-17 Score=137.93 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=82.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+. ..+.+|+.......+.+++ ..+.+|||||+.+.... ...+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~ 86 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL---------RPLS 86 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT---------GGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH---------HHHh
Confidence 4569999999999999999999988663 3444555444445556655 46899999998543211 1223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 87 YPMTDVFLICFSVVNPASFQNVKE-EWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHH-THHHHHHHHSTTCCEEEEEECTTS
T ss_pred cCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhh
Confidence 455799999999998665543321 466666665558999999999996
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=2.5e-17 Score=136.30 Aligned_cols=116 Identities=23% Similarity=0.230 Sum_probs=80.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+...+ ..+.+|||||........ ..+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------~~~ 91 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT---------TAY 91 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG---------GGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH---------HHh
Confidence 357999999999999999999999887544334333334444444443 468999999975432111 223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 92 ~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 139 (189)
T 2gf9_A 92 YRGAMGFLLMYDIANQESFAAVQ--DWATQIKTYSWDNAQVILVGNKCDL 139 (189)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccc
Confidence 44579999999999865443332 5666665542 47899999999996
No 75
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=5.4e-18 Score=138.21 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=83.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+.....+.++.+.....+.+++. .+.+|||||..... . ....+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----~-----~~~~~~ 84 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----S-----LIPSYI 84 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG----G-----GSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH----H-----HHHHHh
Confidence 468999999999999999999988876666666666777777777664 68999999963211 0 112233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 131 (179)
T 2y8e_A 85 RDSTVAVVVYDITNTNSFHQTS--KWIDDVRTERGSDVIIMLVGNKTDL 131 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHTTSSEEEEEEECGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCcc
Confidence 4579999999999865443332 5566555432 47899999999996
No 76
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.72 E-value=8.3e-18 Score=139.28 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=82.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+|+|++.......+ ..|.+.....+.+++..+.+|||||..+... ....+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~~~ 89 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN---------LWEHYYK 89 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSSCEEEEEEECCSTTTGG---------GGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECCEEEEEEECCCCHHHHH---------HHHHHHh
Confidence 56799999999999999999999887333233 2455567777788888999999999743211 1122345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc----CCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF----MNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~----~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl 138 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAK--EELDTLLNHPDIKHRRIPILFFANKMDL 138 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHH--HHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence 579999999999865444332 4555554321 47899999999996
No 77
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.72 E-value=1.9e-17 Score=136.64 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=80.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeee-EEEEEecC-----------ceEEEEeCCCCCCCCCCchh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLF-VGHTDYKY-----------LRYQVIDTPGILDRPFEDRN 234 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~-~~~~~~~~-----------~~~~iiDTpG~~~~~~~~~~ 234 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.. ......++ ..+.+|||||+. ..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~- 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE-----RF- 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG-----GG-
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH-----HH-
Confidence 3579999999999999999999988775444443333333 33444443 378999999972 11
Q ss_pred HHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 235 IIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 235 ~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
. .....+...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 84 --~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 84 --R-SLTTAFFRDAMGFLLLFDLTNEQSFLNVR--NWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp --H-HHHHHTTTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred --H-HHHHHHHcCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 1 12234455679999999999865443322 5666665543 47899999999996
No 78
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=2.4e-18 Score=156.10 Aligned_cols=123 Identities=21% Similarity=0.402 Sum_probs=90.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
++|+++|.+|||||||+|+|++..+.+++++++|..+..+.+.+++ ..+++|||||+.+....... +....+..+ ..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~-l~~~fl~~i-~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG-LGHQFLRHI-ER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT-THHHHHHHH-HH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch-hHHHHHHHH-Hh
Confidence 4799999999999999999999988889999999999999988876 78999999997542111111 111222222 23
Q ss_pred CcEEEEEEeCCCCCCCCHHHH-HHHHHHHhhcc---CCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQ-AALFHSIKSLF---MNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~-~~~l~~l~~~~---~~~piivV~NK~Dl 293 (293)
+|++++|+|+++..+....+. ..|+.++.... .++|+++|+||+|+
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl 286 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM 286 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccC
Confidence 699999999998322222222 25666666542 47999999999996
No 79
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-17 Score=137.21 Aligned_cols=113 Identities=23% Similarity=0.252 Sum_probs=78.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||++++++..+. .. ..|.+.....+.+++..+.+|||||+.+..... .....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~~~ 84 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV-TT--KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYW---------RCYYA 84 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE-EE--CSSTTCCEEEEEETTEEEEEEEEC----CCTTG---------GGTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC-cc--CCcCccceEEEEECCEEEEEEECCCCHhHHHHH---------HHHhc
Confidence 5679999999999999999999987662 11 123334456667778889999999985432111 12344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 85 DTAAVIFVVDSTDKDRMSTAS--KELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp TEEEEEEEEETTCTTTHHHHH--HHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHHcChhhCCCeEEEEEECCCC
Confidence 579999999999976654443 566665543 257899999999996
No 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.72 E-value=8.9e-18 Score=140.63 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=82.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||||........ ..+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------~~~ 77 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG---------VAF 77 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC---------CGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH---------HHH
Confidence 456999999999999999999999887655555556666666666665 468999999974321110 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-----CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-----MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-----~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (207)
T 1vg8_A 78 YRGADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGNKIDL 129 (207)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHCCSSGGGSCEEEEEECTTS
T ss_pred HhCCcEEEEEEECCCHHHHHHHH--HHHHHHHHhcccccCCCCcEEEEEECCCC
Confidence 44579999999999865443332 4555554332 36899999999996
No 81
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=1.5e-17 Score=138.03 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=80.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+..++ ..+++|||||........ ..+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT---------RSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC---------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH---------HHH
Confidence 456999999999999999999999887655555555555556666665 368999999974321111 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl 138 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLT--SWLEDARQHSSSNMVIMLIGNKSDL 138 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccc
Confidence 44579999999999865443332 566666543 247899999999996
No 82
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=2.8e-17 Score=137.42 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=81.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+..++ ..+.+|||||+. ... .....+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~----~~~~~~ 77 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE-----RYR----TITTAY 77 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-----GGH----HHHHTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch-----hhc----chHHHh
Confidence 356999999999999999999999887544444334444444444444 468999999972 111 112334
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 78 ~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 125 (203)
T 1zbd_A 78 YRGAMGFILMYDITNEESFNAVQ--DWSTQIKTYSWDNAQVLLVGNKCDM 125 (203)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSCSSCEEEEEEECTTC
T ss_pred hcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccc
Confidence 55679999999999865544333 5666665543 47899999999996
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=138.45 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=74.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||||..+. . .....+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~----~~~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF-----R----SIAKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC-----H----HHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch-----h----hhHHHH
Confidence 457999999999999999999998876533333333334444455554 45899999997321 1 111223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIR--EWVDMIEDAAHETVPIMLVGNKADI 145 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHH--HHHHHHHHHC---CCEEEEEECGGG
T ss_pred HhhCCEEEEEEECCChHHHHHHH--HHHHHHHHhcCCCCCEEEEEECccc
Confidence 34479999999999865544333 4666665432 47899999999996
No 84
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=1.9e-17 Score=133.72 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=78.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|.+..+.....+....+.......+.+ ..+.+|||||+.+. . .....+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-----~----~~~~~~~ 76 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF-----R----ALAPMYY 76 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----G----GGTHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh-----h----cccHhhC
Confidence 46899999999999999999999886543333333333334444444 46899999997221 1 1112234
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+... ....|+++|+||+|+
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~~iilv~nK~Dl 123 (170)
T 1z0j_A 77 RGSAAAIIVYDITKEETFSTLK--NWVRELRQHGPPSIVVAIAGNKCDL 123 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSCTTSEEEEEEECTTC
T ss_pred cCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECCcc
Confidence 5579999999999865544332 566666554 357899999999996
No 85
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=136.46 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=78.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+. ..+..|+..........++ ..+++|||||...... + ..+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----~-----~~~ 88 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-----C-----ERY 88 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-----T-----HHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-----H-----HHH
Confidence 4579999999999999999999988764 3444454444334444444 3578999999843221 1 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc----CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF----MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~----~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 89 ~~~~~~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl 139 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQSFDSSS--SYLELLALHAKETQRSIPALLLGNKLDM 139 (187)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHHHHCCCCCEEEEEECGGG
T ss_pred HhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHHhhccCCCCCEEEEEECcch
Confidence 44579999999999876655443 5666665432 58999999999996
No 86
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=2.1e-17 Score=137.49 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=79.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||++++++..+. ... .|.+.....+.+++..+.+|||||..+.... ...+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~~~ 95 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNICFTVWDVGGQDKIRPL---------WRHYFQ 95 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEE--EETTEEEEEEEETTEEEEEEECC-----CTT---------HHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-ccC--CcCceeEEEEEECCEEEEEEECCCCHhHHHH---------HHHHhc
Confidence 5679999999999999999999987764 222 2555566677778889999999998432111 122334
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~--~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESA--DELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred cCCEEEEEEECCCHHHHHHHH--HHHHHHhcccccCCCeEEEEEECCCC
Confidence 579999999999976654433 556555432 247999999999996
No 87
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.4e-17 Score=139.97 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=84.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+.....++.+.+.....+.+++. .+++|||||. ++ +. .....+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------~~--~~-~~~~~~ 95 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ------ER--FR-SITQSY 95 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------GG--GH-HHHGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------HH--HH-HHHHHH
Confidence 3579999999999999999999998876555566666666666777664 6899999997 21 11 112334
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 96 ~~~~d~~i~v~D~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~NK~Dl 143 (201)
T 2ew1_A 96 YRSANALILTYDITCEESFRCLP--EWLREIEQYASNKVITVLVGNKIDL 143 (201)
T ss_dssp STTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred HhcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCC
Confidence 45679999999999865543333 5666665542 47899999999996
No 88
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=1.9e-17 Score=135.38 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=81.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||||.... . .....+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~----~~~~~~ 81 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----H----SLAPMY 81 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG-----G----GGTHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh-----h----hhhHHH
Confidence 456999999999999999999999887654444444444455555554 36899999997321 1 111223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~i~v~nK~Dl 129 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAK--KWVQELQAQGNPNMVMALAGNKSDL 129 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCcc
Confidence 45579999999999865544333 5666666542 47899999999996
No 89
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.71 E-value=1.6e-17 Score=137.97 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=81.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|++++..+. ..+.+|+..........++. .+++|||||..+... ....+
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~ 91 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR---------LRPLS 91 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT---------TGGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH---------HhHhh
Confidence 4569999999999999999999998864 33344444444445555554 469999999732211 11223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... ..|+..+.....+.|+++|+||+|+
T Consensus 92 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 92 YADSDVVLLCFAVNNRTSFDNIS-TKWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHH-HTHHHHHHHHCTTSEEEEEEECGGG
T ss_pred ccCCcEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhh
Confidence 44579999999999976554431 2566666665568999999999996
No 90
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=140.96 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=79.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+.....++.+.+.....+.+++ ..+.+|||||+....... ..+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~ 82 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT---------SAY 82 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC---------GGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH---------HHH
Confidence 356999999999999999999999887655555555556666666766 468999999975432111 223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 83 ~~~~d~vilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl 130 (223)
T 3cpj_B 83 YRGAVGALIVYDISKSSSYENCN--HWLSELRENADDNVAVGLIGNKSDL 130 (223)
T ss_dssp TTTCCEEEEEEC-CCHHHHHHHH--HHHHHHHHHCC--CEEEEEECCGGG
T ss_pred hccCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCeEEEEEECccc
Confidence 45579999999999876554433 567666554 247899999999996
No 91
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.71 E-value=1.2e-17 Score=140.44 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=81.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCce--EEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||++++++..+. ..+..++.+.......+++.. +.+|||||+.+... ....+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~ 98 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR---------LRPLS 98 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT---------TGGGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH---------HHHHH
Confidence 4679999999999999999999987764 344455555555556666654 55999999832211 11223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... ..|+..+.....+.|+++|+||+|+
T Consensus 99 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 99 YPQTDVFLICFSLVSPASFENVR-AKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHH-HTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEechhh
Confidence 45579999999999876554432 1466666665568999999999995
No 92
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.71 E-value=1e-16 Score=132.44 Aligned_cols=120 Identities=23% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHH-HHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS-ITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~-~~~ 243 (293)
...++|+++|.+|||||||+|+|++.... ..+.+++|........ +..+.+|||||+............... ...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 35679999999999999999999998744 4556666665544322 456899999997654332211111111 122
Q ss_pred hh---ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LA---HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~---~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+. ..+|++++|+|+++....... .++..+.. .+.|+++|+||+|+
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~---~~~~~~~~--~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL---MMVEWMKS--LNIPFTIVLTKMDK 145 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH---HHHHHHHH--TTCCEEEEEECGGG
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH---HHHHHHHH--cCCCEEEEEEChhc
Confidence 22 224899999999875433222 33334433 37899999999995
No 93
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.7e-17 Score=136.18 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=82.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||||..+.... ...+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~~ 85 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL---------TPSYY 85 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS---------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh---------hHHHh
Confidence 46999999999999999999999887654444444555555555554 46899999997332111 12234
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+.++.... .+.|+++|+||+|+
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLD--NWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHH--HHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred ccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 4579999999999865443333 5677776543 47899999999996
No 94
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.71 E-value=5e-17 Score=130.34 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=77.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|++.+..+.. .+..++..........++. .+.+|||||..+.. . ....+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~-----~~~~~~ 72 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A-----MRDQYM 72 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----H-----HHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----H-----HHHHhh
Confidence 3589999999999999999999887643 3334444444445555544 47899999974321 1 112233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~p~iiv~nK~Dl 120 (166)
T 2ce2_X 73 RTGEGFLCVFAINNTKSFEDIH--QYREQIKRVKDSDDVPMVLVGNKSDL 120 (166)
T ss_dssp HHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEEchhh
Confidence 4469999999999865443332 5566655443 37999999999996
No 95
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=2.3e-17 Score=133.10 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=78.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+.....+..+.+.......+++ ..+.+|||||+.+. . .....+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~----~~~~~~~ 76 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----H----SLAPMYY 76 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----G----GGHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-----h----hhhHHhc
Confidence 46899999999999999999998876543333333333334444443 46899999997321 1 1112334
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~iilv~nK~Dl 123 (170)
T 1r2q_A 77 RGAQAAIVVYDITNEESFARAK--NWVKELQRQASPNIVIALSGNKADL 123 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccC
Confidence 5579999999999865544333 566666543 357899999999996
No 96
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.71 E-value=5e-17 Score=133.38 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=80.6
Q ss_pred CCCCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCce--EEEEeCCCCCCCCCCchhHHHHH
Q 040152 162 PSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDRNIIEMC 239 (293)
Q Consensus 162 ~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~iiDTpG~~~~~~~~~~~~e~~ 239 (293)
+..+....+|+++|.+|||||||+|+|++..+.. .+..++..........++.. +.+|||||..+....
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------- 82 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM-------- 82 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS--------
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH--------
Confidence 3334467799999999999999999999876643 33344444445556666654 567999997432111
Q ss_pred HHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 240 SITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 240 ~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 83 -~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 83 -REQYMRTGDGFLIVYSVTDKASFEHVD--RFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 112233469999999999976554333 455555332 257899999999996
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=3.3e-17 Score=135.46 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=81.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+|++.+..+.. ..| |.+.....+.+++..+++|||||+.+..... ..+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~---------~~~~~ 88 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYW---------RCYFS 88 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCC---------SSSST
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHH---------HHHhh
Confidence 46799999999999999999998877642 222 4445566677778889999999985432111 11334
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .++..+... ..+.|+++|+||+|+
T Consensus 89 ~~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 89 DTDAVIYVVDSTDRDRMGVAK--HELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp TCCEEEEEEETTCCTTHHHHH--HHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred cCCEEEEEEeCCCHHHHHHHH--HHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 579999999999987665443 455554332 247899999999996
No 98
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=136.21 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=79.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|++..+.....+..+.+........++ ..+.+|||||+.+.... ...+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI---------TSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT---------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh---------hHHH
Confidence 457999999999999999999999887644333333333334444433 46899999998543211 1223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~--~~l~~i~~~~~~~~piilv~nK~Dl 142 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVE--RWLKELYDHAEATIVVMLVGNKSDL 142 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHH--HHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred hccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCeEEEEEECCCc
Confidence 44579999999999865443222 5666665542 47899999999996
No 99
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.71 E-value=2.5e-17 Score=139.53 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+.. .+..|+..........++ ..+.+|||||...... ....+
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~ 95 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN---------VRPLC 95 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT---------TGGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH---------HHHHH
Confidence 46799999999999999999999988753 333333333333334443 4689999999732211 11223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++... ...|+..+.....+.|+++|+||+|+
T Consensus 96 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~Dl 143 (214)
T 3q3j_B 96 YSDSDAVLLCFDISRPETVDSA-LKKWRTEILDYCPSTRVLLIGCKTDL 143 (214)
T ss_dssp CTTCSEEEEEEETTCTHHHHHH-HTHHHHHHHHHCTTSEEEEEEECGGG
T ss_pred cCCCeEEEEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 4557999999999997665441 12677777766668999999999996
No 100
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=1.9e-17 Score=140.00 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=80.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec------------CceEEEEeCCCCCCCCCCchh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK------------YLRYQVIDTPGILDRPFEDRN 234 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~------------~~~~~iiDTpG~~~~~~~~~~ 234 (293)
...+|+++|.+|||||||+|+|++..+.....+..+.+.....+.++ ...+++|||||. +
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------~-- 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------E-- 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH------H--
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc------H--
Confidence 35799999999999999999999887754333333333444444444 346899999996 2
Q ss_pred HHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 235 IIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 235 ~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
.+. .....+...+|++++|+|++++.++... ..|+..+.... .+.|+++|+||+|+
T Consensus 96 ~~~-~~~~~~~~~~d~iilV~D~~~~~s~~~~--~~~l~~i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 96 RFR-SLTTAFFRDAMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp HHH-HHHHHHHTTCCEEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred hHH-hHHHHHhcCCCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence 111 1223344567999999999986544332 25666665433 57899999999996
No 101
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.71 E-value=1.6e-17 Score=133.99 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=66.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..+|+++|.+|||||||+|++++.... ..+.++++.. .....++ ..+.+|||||..... .....+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR---------WLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch---------hhhhhh
Confidence 468999999999999999999987664 3344444443 2233433 357899999974321 111223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl 118 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKAS--ELRVQLRRARQTDDVPIILVGNKSDL 118 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHH--HHHHHHHHCC---CCCEEEEEECTTC
T ss_pred hhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEecccc
Confidence 44579999999999876554433 456665543 247899999999996
No 102
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=140.55 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+.. .+.+|+.......+..++. .+.+|||||..+.. .....+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~~~~ 102 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE-SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD---------RLRPLF 102 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCchhhh---------HHHHHH
Confidence 45799999999999999999999887643 3334444444445555554 58999999973221 111223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 103 YPDASVLLLCFDVTSPNSFDNIFN-RWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp --CEEEEEEEEETTCHHHHHHHHH-THHHHHHHHCSSCCEEEEEECGGG
T ss_pred hccCCEEEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhh
Confidence 445799999999998655443321 467676665568999999999996
No 103
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.71 E-value=8.6e-17 Score=140.19 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=83.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCcc-ceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHH--HHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAF-TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIE--MCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~-tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e--~~~~~ 242 (293)
...+|+++|.+|||||||+|+|++.... ....+. +|.....+...+++..+.||||||+.+.........+ .....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999999988744 333344 7888888888889999999999999765433222111 11222
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHH--HHHHHHHhhccCCCcEEEEEe-ccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQ--AALFHSIKSLFMNKPLIIVCN-KTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~--~~~l~~l~~~~~~~piivV~N-K~Dl 293 (293)
.....+|++++|+|++. +..... +.++..+.......|.++|+| |+|+
T Consensus 101 ~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl 151 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL 151 (260)
T ss_dssp HHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred hcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEccccc
Confidence 23455799999999985 443322 234443322111457777777 9995
No 104
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.70 E-value=1.9e-17 Score=135.90 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=79.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+.. .+..++..........++. .+++|||||+.+... ....+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~ 73 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR---------LRPLS 73 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS-SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT---------TGGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH---------HHHHh
Confidence 34689999999999999999999877643 3334444444444555554 467999999832210 11223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 74 YPQTDVSLICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHH-THHHHHHHHSTTSCEEEEEECHHH
T ss_pred ccCCcEEEEEEECCChhhHHHHHH-HHHHHHHHhCCCCCEEEEeEcccc
Confidence 455799999999998655443321 466666655458999999999995
No 105
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.70 E-value=2.5e-18 Score=143.67 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=84.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....++++.+.....+.+++ ..+.+|||||........ ..+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~ 102 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT---------SSY 102 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS---------CC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH---------HHH
Confidence 457999999999999999999999887666666667777777777776 468999999975432111 113
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 103 YRGAHGIIVVYDVTDQESFNNVK--QWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp -CCCSEEEECC-CCCSHHHHHHH--HHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred hhcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhccCCCCEEEEEECccC
Confidence 34579999999999976554443 5677776543 37899999999996
No 106
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.70 E-value=2.6e-17 Score=135.69 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+... +..|........+.+++ ..+.+|||||...... ....+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~ 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN---------VRPLS 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT---------TGGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEECCEEEEEEEEECCCChhhhh---------hHHhh
Confidence 456899999999999999999998876432 33333333333444444 4689999999732210 01223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... ..|+..+.....+.|+++|+||+|+
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 76 YPDSDAVLICFDISRPETLDSVL-KKWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHH-HTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred cCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCEEEEEEcchh
Confidence 45579999999999866554331 1466666655568999999999996
No 107
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=2.6e-17 Score=137.84 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=80.9
Q ss_pred CCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHH
Q 040152 164 IDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSI 241 (293)
Q Consensus 164 ~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~ 241 (293)
+.....+|+++|.+|||||||++++++..+.....+.++.. ....+.+++. .+.+|||||..+... ..
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~ 90 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YIADIEVDGKQVELALWDTAGQEDYDR---------LR 90 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC-CEEEEEETTEEEEEEEECCCCSGGGTT---------TG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce-EEEEEEECCEEEEEEEEECCCchhHHH---------HH
Confidence 33456799999999999999999999887754333333332 2234555553 689999999732211 01
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+...+|++++|+|++++.++.... ..|+..+.....+.|+++|+||+|+
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 91 PLSYPDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHH-HTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEecHHh
Confidence 12344579999999999865554331 1466666655458999999999996
No 108
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=6e-17 Score=137.32 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCce--EEEEeCCCCCCCCCCchhHHHHHHH-H
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDRNIIEMCSI-T 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~--~~iiDTpG~~~~~~~~~~~~e~~~~-~ 242 (293)
...+|+++|.+|||||||+|++++.... ...++.++.+.....+.+++.. +++|||+|.. .. + ..+ .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~------~~--~-~~l~~ 106 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK------GE--N-EWLHD 106 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT------HH--H-HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc------ch--h-hhHHH
Confidence 3468999999999999999999976543 3444555555555566666654 6789999972 11 1 122 3
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+...+|++++|||++++.++.... .|...+... ..+.|+++|+||+||
T Consensus 107 ~~~~~a~~~ilVydvt~~~sf~~~~--~~~~~l~~~~~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 107 HCMQVGDAYLIVYSITDRASFEKAS--ELRIQLRRARQTEDIPIILVGNKSDL 157 (211)
T ss_dssp CCCCCCSEEEEEEETTCHHHHHHHH--HHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHH--HHHHHHHHHhCCCCCcEEEEEEChHH
Confidence 3445579999999999976665544 455555432 247899999999997
No 109
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=4.3e-17 Score=153.56 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=77.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..++|+++|.+|||||||+|+|++..+. +.+.+++|.+.......+.+..+++|||||+..........+..++.. ..
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~-~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI-AM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH-HH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh-hH
Confidence 3568999999999999999999998775 778899999999999988899999999999863322112222223323 33
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++|+|+|+++ ++...+. .+.+.++. .++|+++|+||+|+
T Consensus 101 ~~ad~il~VvD~~~--~~~~~d~-~l~~~l~~--~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 101 DEADVIIFMVNGRE--GVTAADE-EVAKILYR--TKKPVVLAVNKLDN 143 (456)
T ss_dssp HHCSEEEEEEESSS--CSCHHHH-HHHHHHTT--CCSCEEEEEECC--
T ss_pred hhCCEEEEEEeCCC--CCChHHH-HHHHHHHH--cCCCEEEEEECccc
Confidence 45799999999877 4444442 34555554 58999999999995
No 110
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=5.1e-17 Score=134.26 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=76.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+. ..+.+++.......+.+++. .+.+|||||..+.. .....+.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 90 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------AMRDQYM 90 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------C
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHHH---------HHHHHhh
Confidence 469999999999999999999987664 33444555555555666654 48999999973211 1112344
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADIN--LYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHH--HHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred CcCCEEEEEEECcCHHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 5579999999999865543332 4565555432 37899999999996
No 111
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=2.8e-17 Score=138.48 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=82.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|.+..+. ..+.+|+.+.....+.+++. .+.+|||||+...... ...+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~ 77 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL---------RPLS 77 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-----------CGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH---------HHhh
Confidence 4579999999999999999999988764 34444554444445555553 6899999998543211 1123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 78 ~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 78 YRGADIFVLAFSLISKASYENVLK-KWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHH-THHHHHHHHCTTCCEEEEEECHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEeCHHh
Confidence 455799999999998655443321 467777665558999999999995
No 112
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=140.08 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=75.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....++.+.+.....+.+++ ..+.+|||||..... .....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~~~~ 94 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR---------SVTRSY 94 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS---------CCCHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH---------HHHHHH
Confidence 457999999999999999999998887655555555556666666666 578999999962110 001223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 95 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl 142 (200)
T 2o52_A 95 YRGAAGALLVYDITSRETYNSLA--AWLTDARTLASPNIVVILCGNKKDL 142 (200)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHTCTTCEEEEEEECGGG
T ss_pred hccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECCCc
Confidence 44579999999999865543332 5666665432 47899999999996
No 113
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4e-17 Score=135.89 Aligned_cols=114 Identities=21% Similarity=0.274 Sum_probs=78.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+... +..++.......+.+++ ..+.+|||||+.+ . .....+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~-----~~~~~~ 95 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T-----IQREGH 95 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C-----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c-----cchhhh
Confidence 457999999999999999999998876433 33333333334445554 4589999999854 1 111223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 96 ~~~~d~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRGSFEEVL--PLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred hccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhhCCCCCcEEEEEECccc
Confidence 34469999999999866553333 455555442 247899999999996
No 114
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=3.1e-17 Score=135.62 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=80.1
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
....+|+++|.+|||||||++++++..+.....+ | .+.....+.+++. .+++|||||... . .
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~-----~---- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP-E-GGRFKKEIVVDGQSYLLLIRDEGGPPE-----L-----Q---- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT-T-CEEEEEEEEETTEEEEEEEEECSSSCC-----H-----H----
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-C-cceEEEEEEECCEEEEEEEEECCCChh-----h-----h----
Confidence 3567999999999999999999998877543322 2 3344456666664 467899999721 1 1
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc--CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF--MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~--~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVY--NYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHH--HHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred eecCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccc
Confidence 233469999999999976655433 5777776542 47899999999996
No 115
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.5e-17 Score=136.94 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=77.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+... +.+++.......+..++ ..+.+|||||..+..... ..+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~~ 94 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR---------PLSY 94 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTG---------GGGC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHH---------Hhhc
Confidence 46899999999999999999998877533 33333333333455555 368999999985432111 1234
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... ..|+..+.....+.|+++|+||+|+
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIP-EKWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHH-HTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred CCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEEchhh
Confidence 4579999999999865544331 1466666655568999999999996
No 116
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.70 E-value=1.2e-17 Score=139.76 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC--CcccccCccce-eeeeEEEEEecC----ceEEEEeCCCCCCCCCCchhHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA--DVDVQPYAFTT-KSLFVGHTDYKY----LRYQVIDTPGILDRPFEDRNIIEMC 239 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~--~~~~~~~~~tt-~~~~~~~~~~~~----~~~~iiDTpG~~~~~~~~~~~~e~~ 239 (293)
...+|+++|.+|||||||+++|++. .+. ..+.+|+ .+.....+.+++ ..+.+|||||+ +. .. .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~--~~-~ 88 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS------DL--YK-E 88 (208)
T ss_dssp EEEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTT------HH--HH-H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc-CCCCCccceEEEEEEEEECCcccEEEEEEEECCCc------HH--HH-H
Confidence 3469999999999999999999988 443 2333333 355666667764 46899999997 21 11 1
Q ss_pred HHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc----CCCcEEEEEeccCC
Q 040152 240 SITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF----MNKPLIIVCNKTDL 293 (293)
Q Consensus 240 ~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~----~~~piivV~NK~Dl 293 (293)
....+...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCK--AWFELLKSARPDRERPLRAVLVANKTDL 144 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHH--HHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHH--HHHHHHHHhhcccccCCcEEEEEECccc
Confidence 1233445579999999999876544333 6777776543 37899999999996
No 117
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.2e-17 Score=131.31 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=72.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|.+|||||||+|+|++..+.....+. ...........++ ..+.+|||||+.+. ..+ .....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-----~~~----~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT-VEDTYRQVISCDKSICTLQITDTTGSHQF-----PAM----QRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCC-SCEEEEEEEEETTEEEEEEEEECCSCSSC-----HHH----HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-ccccEEEEEEECCEEEEEEEEECCCchhh-----HHH----HHHhc
Confidence 468999999999999999999988764332222 2122222233333 35899999997432 111 12233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
..+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~pii~v~nK~Dl 121 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELK--PIYEQICEIKGDVESIPIMLVGNKCDE 121 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTH--HHHHHHHHHHC---CCCEEEEEECGGG
T ss_pred ccCCEEEEEEECcCHHHHHHHH--HHHHHHHHHhCCCCCCCEEEEEEcccc
Confidence 3469999999999865443222 344444332 247899999999995
No 118
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=1.3e-17 Score=136.48 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=72.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||++++.+..+. ..+.+|+.......+..++ ..+++|||||+...... ...+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~ 76 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL---------RPLS 76 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTT---------GGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh---------HHhh
Confidence 4579999999999999999999987764 2333343333222233333 34679999998443211 1123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 77 YRGADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHH-THHHHHHHHCTTCCEEEEEECHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCEEEEEechhh
Confidence 445799999999998655443321 466666665558999999999995
No 119
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.1e-17 Score=137.26 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=78.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe--cCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY--KYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+....+.......+ ....+.+|||||..+. .. ....+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~----~~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF-----HS----LAPMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG-----GG----GTHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh-----Hh----hhHHh
Confidence 4579999999999999999999988764322222222222333333 3346899999997321 10 11223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~--~~~~~i~~~~~~~~piiiv~NK~Dl 140 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLK--KWVKELKEHGPENIVMAIAGNKCDL 140 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHH--HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred hccCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhCCCCCcEEEEEECccc
Confidence 44579999999999876554333 5666665543 47899999999996
No 120
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=135.56 Aligned_cols=115 Identities=17% Similarity=0.319 Sum_probs=78.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec--CceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK--YLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|++..+.. .+..++..........+ ...+.+|||||..+..... ..+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------~~~ 92 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSE-GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP---------YSF 92 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC---------GGG
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH---------HHH
Confidence 46799999999999999999999988753 33334433334444433 3567999999975432211 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl 141 (201)
T 3oes_A 93 IIGVHGYVLVYSVTSLHSFQVIE--SLYQKLHEGHGKTRVPVVLVGNKADL 141 (201)
T ss_dssp TTTCCEEEEEEETTCHHHHHHHH--HHHHHHHC-----CCCEEEEEECTTC
T ss_pred HhcCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCCEEEEEECccC
Confidence 44579999999999866554433 566666543 247899999999996
No 121
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.69 E-value=1.3e-16 Score=134.57 Aligned_cols=115 Identities=21% Similarity=0.322 Sum_probs=73.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---CceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---YLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
..++|+++|.+|||||||+++|++..+. ..+++++.+.. .+.++ +..+++|||||+ +. +.......
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~------~~--~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSA--IYKVNNNRGNSLTLIDLPGH------ES--LRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC-CBCCCCSCEEE--EEECSSTTCCEEEEEECCCC------HH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCcceeeE--EEEecCCCccEEEEEECCCC------hh--HHHHHHHH
Confidence 4569999999999999999999988763 34444443333 35555 467999999998 21 11112334
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHH-HHHHHhh---ccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAA-LFHSIKS---LFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~-~l~~l~~---~~~~~piivV~NK~Dl 293 (293)
+...+|++++|+|+++... ....... |...+.. ...+.|+++|+||+|+
T Consensus 75 ~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQR-EVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127 (214)
T ss_dssp HGGGEEEEEEEEETTTHHH-HHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred HHhhCCEEEEEEECCCcCH-HHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence 4566799999999987211 0111112 2222222 1246899999999996
No 122
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-17 Score=137.15 Aligned_cols=113 Identities=21% Similarity=0.359 Sum_probs=71.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc---ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV---QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~---~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
..++|+++|.+|||||||+|+|++..+.. ...+.++. .+.+..+.+|||||+.+...... ..+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~~~-----~~~~~ 114 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYKLS-----DYLKT 114 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCHH-----HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCchHHHHHH-----HHHHh
Confidence 56799999999999999999999887542 12222222 22556789999999865432211 12222
Q ss_pred hhccCcEEEEEEeCC-CCCCCCHHHHHHHHHHHhhc-----cCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDIS-GSCGYSIAQQAALFHSIKSL-----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s-~~~~~~~~~~~~~l~~l~~~-----~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++ ++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTA--EFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHH--HHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred hcccCCEEEEEEECCCCchhHHHHH--HHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 223469999999998 543333222 344443321 147999999999996
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=5.1e-17 Score=153.05 Aligned_cols=123 Identities=23% Similarity=0.231 Sum_probs=85.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCC-cccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHH-
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITA- 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~- 243 (293)
....+|+++|.+|||||||+|+|++.. ..+++++++|.+.....+.+++..+++|||||+.+........-.+..+.+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 456799999999999999999999876 447889999999988889999999999999998664321100001122222
Q ss_pred -hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 -LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 -l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|+++.. .... ..++..+.. .+.|+++|+||+|+
T Consensus 273 ~~~~~ad~~llviD~~~~~--~~~~-~~~~~~~~~--~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGI--IEQD-KRIAGYAHE--AGKAVVIVVNKWDA 318 (456)
T ss_dssp HHHHHCSEEEEEEETTTCC--CHHH-HHHHHHHHH--TTCEEEEEEECGGG
T ss_pred HHHhhCCEEEEEEeCCCCc--CHHH-HHHHHHHHH--cCCCEEEEEEChhc
Confidence 234479999999999843 3332 255666655 57999999999996
No 124
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.69 E-value=4.2e-17 Score=137.36 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=79.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+... +..|+.......+.+++ ..+.+|||||...... ....+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~ 96 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN---------VRPLS 96 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT---------TGGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH---------HHHhh
Confidence 456999999999999999999999877533 22333333333444444 4689999999732210 01223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... ..|+..+.....+.|+++|+||+|+
T Consensus 97 ~~~~d~~ilv~D~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 97 YPDSDAVLICFDISRPETLDSVL-KKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHH-HTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred ccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCEEEEEechhh
Confidence 45579999999999865544331 1566666665568999999999996
No 125
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.6e-17 Score=137.82 Aligned_cols=116 Identities=24% Similarity=0.275 Sum_probs=79.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe--cCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY--KYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
..++|+++|.+|||||||+|+|++..+.....+..+.+........ ....+.+|||||. +. .. .....+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~--~~-~~~~~~ 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ------ER--YR-TITTAY 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH------HH--CH-HHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh------HH--HH-HHHHHH
Confidence 4579999999999999999999987765333332233333334443 3456899999995 11 11 122334
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl 140 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQ--DWATQIKTYSWDNAQVILVGNKCDM 140 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred HccCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCC
Confidence 55679999999999866554333 5666666543 57899999999996
No 126
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=1.3e-17 Score=141.68 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=80.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+++...+. ..+..+++...........+..+.+|||||........ ..+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------~~~ 84 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR---------DGY 84 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC---------HHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH---------HHH
Confidence 4579999999999999999996654432 33444555554444444344578999999974322111 123
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .|+..+.....+.|+++|+||+|+
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDI 131 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHSTTCCEEEEEECTTS
T ss_pred HhcCCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCcc
Confidence 34579999999999866544333 577777665568999999999996
No 127
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.68 E-value=3.9e-16 Score=139.65 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcCCccc------ccCc---cceeeee--------------
Q 040152 150 YLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRADVDV------QPYA---FTTKSLF-------------- 206 (293)
Q Consensus 150 ~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~------~~~~---~tt~~~~-------------- 206 (293)
.+++.++.+..+.......++|+++|.+|||||||+|+|++..+.. +..| .++....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 3445555555444334567899999999999999999999987621 2222 1222100
Q ss_pred ------------------------E-------------EEEEecCceEEEEeCCCCCCCCC-----CchhHHHHHHHHHh
Q 040152 207 ------------------------V-------------GHTDYKYLRYQVIDTPGILDRPF-----EDRNIIEMCSITAL 244 (293)
Q Consensus 207 ------------------------~-------------~~~~~~~~~~~iiDTpG~~~~~~-----~~~~~~e~~~~~~l 244 (293)
. ......+..+.+|||||+.+.+. .....+.... ..+
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMV-MAY 164 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHH-HHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHH-HHH
Confidence 0 00111335799999999965321 1111122222 233
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|+++.. +.......++..+.. .+.|+++|+||+|+
T Consensus 165 ~~~~d~iilvvd~~~~~-~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 165 IKKQNAIIVAVTPANTD-LANSDALQLAKEVDP--EGKRTIGVITKLDL 210 (315)
T ss_dssp HHSTTEEEEEEEESSSC-STTCSHHHHHHHHCS--SCSSEEEEEECTTS
T ss_pred HcCCCeEEEEEEecCcc-hhhhHHHHHHHHhCC--CCCcEEEEEcCccc
Confidence 34579999999985432 211111245555554 47899999999996
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=1.9e-16 Score=131.92 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=73.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc--ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV--QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||++++.+..... ....+++..............+++|||||.......... ...+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~------~~~~ 92 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD------YEMI 92 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh------cccc
Confidence 56799999999999999999988753321 111112211111111123357999999998542111100 0123
Q ss_pred hccCcEEEEEEeCCCCCCCCHH-HHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIA-QQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~-~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++ .+... ....|+..+.....+.|+++|+||+|+
T Consensus 93 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl 141 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141 (196)
T ss_dssp HHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred cccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence 3457999999999986 22222 223566665444468999999999995
No 129
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=8.1e-16 Score=136.40 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCCC-CCCCCceEeecCCCCCCHhHHHHHHhcCCcc------cccCcc----------------------c
Q 040152 151 LEQIRQHMARLPS-IDPNTRTILICGYPNVGKSSFMNKITRADVD------VQPYAF----------------------T 201 (293)
Q Consensus 151 l~~~~~~~~~~~~-~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~------~~~~~~----------------------t 201 (293)
+++.++.++.... .....++|+++|.+|||||||+|+|++..+. ++..|+ +
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~t 87 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 87 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccC
Confidence 3444455544332 2235679999999999999999999998763 222332 2
Q ss_pred eeeee------------------------EEEEEecCceEEEEeCCCCCCCCC----Cc-hhHHHHHHHHHhhccCcEEE
Q 040152 202 TKSLF------------------------VGHTDYKYLRYQVIDTPGILDRPF----ED-RNIIEMCSITALAHLRSAVL 252 (293)
Q Consensus 202 t~~~~------------------------~~~~~~~~~~~~iiDTpG~~~~~~----~~-~~~~e~~~~~~l~~~~d~il 252 (293)
|.+.. ..........+.+|||||+.+... +. ...+.......+....++++
T Consensus 88 t~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 167 (299)
T 2aka_B 88 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLIL 167 (299)
T ss_dssp CHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEE
Confidence 32200 000011135799999999875331 11 11222222233333334566
Q ss_pred EEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 253 FFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 253 ~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+|+|+++...... ...+++.+.. .+.|+++|+||+|+
T Consensus 168 ~v~d~~~~~~~~~--~~~~~~~~~~--~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 168 AVSPANSDLANSD--ALKIAKEVDP--QGQRTIGVITKLDL 204 (299)
T ss_dssp EEEESSSCGGGCH--HHHHHHHHCT--TCSSEEEEEECGGG
T ss_pred EEecCCcchhhhH--HHHHHHHhCC--CCCeEEEEEEcccc
Confidence 8999987543332 2245666654 47899999999995
No 130
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=8.7e-17 Score=133.61 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=74.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+|+|++..+.....+ +...........++ ..+.+|||||+.+. ..+ ...+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~----~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQF-----PAM----QRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGSC-----HHH----HHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEECCEEEEEEEEeCCChHHh-----HHH----HHHh
Confidence 467999999999999999999998776433222 22222222233333 36899999997322 111 1223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHH-HHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQ-QAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~-~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++.... .+.++..+.....+.|+++|+||+|+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl 126 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 34479999999999865543332 12333343322247899999999996
No 131
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.67 E-value=5e-17 Score=137.49 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=76.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec-C--ceEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK-Y--LRYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~-~--~~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...+|+++|.+|||||||+|+|++..+.....+..+........... + ..+.+|||||+....... ..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------~~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK---------DV 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---------HH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---------HH
Confidence 45699999999999999999999877653222222222222222222 2 468999999974332111 12
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc-CCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF-MNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~-~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+..+.... .+.|+++|+||+|+
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLA--RWVKEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHH--HHHHHHHHHHCSSSCEEEEEECTTC
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCCEEEEEECCCC
Confidence 344579999999999865543333 5666665443 35899999999996
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=5.1e-16 Score=131.21 Aligned_cols=114 Identities=21% Similarity=0.344 Sum_probs=74.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccc---cCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQ---PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~---~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
...++|+++|++|||||||+++|++..+... ..+.++. .+....+.+|||||+.... ..+ ...+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~----~~~-~~~~~ 77 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLR----YKL-SDYLK 77 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCGGGT----HHH-HHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcHHHH----HHH-HHHHH
Confidence 3567999999999999999999998876421 1221111 1245679999999983221 111 11111
Q ss_pred HhhccCcEEEEEEeCC-CCCCCCHHHHHHHHHHHhhc-----cCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDIS-GSCGYSIAQQAALFHSIKSL-----FMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s-~~~~~~~~~~~~~l~~l~~~-----~~~~piivV~NK~Dl 293 (293)
.....+|++++|+|++ ++.++.... .|+.++... ..+.|+++|+||+|+
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTA--EFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHH--HHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred hccccCCEEEEEEECCCChHHHHHHH--HHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 1112368999999999 766766554 344444321 247999999999996
No 133
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.66 E-value=8.5e-17 Score=133.99 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...+|+++|.+|||||||+|++++.... ...+++++.+.....+.+++. .+++|||+|..... + .+ ...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~---~-~~----~~~ 76 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN---E-WL----HDH 76 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------C-TT----GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh---h-hH----HHh
Confidence 3468999999999999999999974432 334455555555556666665 45789999974310 0 00 012
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+...+|++++|+|++++.++.... .|+..+... ..+.|+++|+||+|+
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~--~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKAS--ELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHH--HHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred hcccCCEEEEEEECCCHHHHHHHH--HHHHHHHHhhCCCCCeEEEEEechhh
Confidence 334479999999999977666544 344444432 247899999999996
No 134
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.66 E-value=1.2e-16 Score=142.59 Aligned_cols=117 Identities=24% Similarity=0.352 Sum_probs=83.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHH---HHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS---ITA 243 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~---~~~ 243 (293)
...|+++|.+|||||||+|+|++..+. +++.+++|.....+.+..++..+.+|||||+... ....+.... ...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~---~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME---EKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHH---HHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCcc---chhhHHHHHHHHHHH
Confidence 457999999999999999999999875 5677888888888888888889999999998410 111111100 011
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|+++ ++..+. .+.+.+.. .+.|+++|+||+|+
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~-~i~~~l~~--~~~P~ilvlNK~D~ 128 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDE-MVLNKLRE--GKAPVILAVNKVDN 128 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHH-HHHHHHHS--SSSCEEEEEESTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHH-HHHHHHHh--cCCCEEEEEECccc
Confidence 2234599999999976 444432 33444443 47899999999996
No 135
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.66 E-value=2.3e-16 Score=130.56 Aligned_cols=118 Identities=16% Similarity=0.072 Sum_probs=72.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccC--------ccceeeeeEEEE---Ee--cCceEEEEeCCCCCCCCCCch
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPY--------AFTTKSLFVGHT---DY--KYLRYQVIDTPGILDRPFEDR 233 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~--------~~tt~~~~~~~~---~~--~~~~~~iiDTpG~~~~~~~~~ 233 (293)
...+|+++|.+|||||||++.+.+........ ...|........ .. ....+++|||||+....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 45799999999999999998887654332110 112322222111 11 23468999999974321
Q ss_pred hHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHH----HHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 234 NIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQ----QAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 234 ~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~----~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+...+|++++|+|++++....... ...|+.+++....+.|+++|+||+|+
T Consensus 89 -----~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl 147 (198)
T 3t1o_A 89 -----ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147 (198)
T ss_dssp -----HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTS
T ss_pred -----HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhc
Confidence 11223455679999999999542222221 12455555433468999999999996
No 136
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.64 E-value=1.7e-16 Score=130.86 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=69.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccC-ccceeeeeEEEEEe-----cCceEEEEeCCCCCCCCCCchhHHHHHHH
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPY-AFTTKSLFVGHTDY-----KYLRYQVIDTPGILDRPFEDRNIIEMCSI 241 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~-~~tt~~~~~~~~~~-----~~~~~~iiDTpG~~~~~~~~~~~~e~~~~ 241 (293)
.+|+++|.+|||||||++++++.... ...+ +....+.....+.. ....+.+|||||+.. ... ..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~-~~ 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE--------FYS-TH 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHH--------HHT-TS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH--------HHH-hh
Confidence 58999999999999999999986321 2222 22222322222221 245789999999621 100 01
Q ss_pred HHhhccCcEEEEEEeCCCCC-CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSC-GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~-~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+...+|++++|+|++++. ++... ..|+.++.....+.|+++|+||+|+
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~--~~~~~~~~~~~~~~piilv~nK~Dl 124 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAM--KPWLFNIKARASSSPVILVGTHLDV 124 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTH--HHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHH--HHHHHHHHhhCCCCcEEEEEECCCc
Confidence 12233468999999998852 33222 2577776654457899999999996
No 137
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=139.92 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=79.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||+++|++..+. ..+..++.+.....+..++. .+++|||||+.+.. .....+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~ 98 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD---------RLRPLS 98 (204)
Confidence 4568999999999999999999987763 33334444444444444443 46799999973221 111223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~-~~~~~l~~~~~~~piilv~NK~Dl 146 (204)
T 3th5_A 99 YPQTDVFLICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDL 146 (204)
Confidence 445799999999999877765431 456666554447899999999996
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=140.88 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=79.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+++|++..+. ..+| |.+.....+...+..++||||||....... ...+..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------~~~~~~ 231 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL---------WRHYFQ 231 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----CCS---------HHHHHT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHHH---------HHHHhc
Confidence 3458999999999999999999988763 2333 666667777888889999999997432211 122344
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++++|+|++++.++.... .++..+... ..+.|+++|+||+|+
T Consensus 232 ~ad~vilV~D~~~~~s~~~~~--~~~~~~~~~~~~~~~piilV~NK~Dl 278 (329)
T 3o47_A 232 NTQGLIFVVDSNDRERVNEAR--EELMRMLAEDELRDAVLLVFANKQDL 278 (329)
T ss_dssp TEEEEEEEEETTCSSSHHHHH--HHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred cCCEEEEEEECCchHHHHHHH--HHHHHHHhhhccCCCeEEEEEECccC
Confidence 579999999999987765544 334333222 247899999999996
No 139
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.64 E-value=1.5e-16 Score=142.76 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=82.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCce--EEEEeCCCCCCCCCCchhHHHHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDRNIIEMCSITAL 244 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~iiDTpG~~~~~~~~~~~~e~~~~~~l 244 (293)
...+|+++|.+|||||||++++++..+ ...+.+|+.+.....+..++.. +++|||||+..... ....+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~ 223 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR---------LRPLS 223 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT---------TGGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH---------HHHHh
Confidence 457999999999999999999998776 3445556666666666666655 55999999733211 11223
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|++++|+|++++.++..... .|+..+.....+.|+++|+||+|+
T Consensus 224 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 224 YPQTDVFLICFSLVSPASFHHVRA-KWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHH-THHHHHHHHCTTSCEEEEEECHHH
T ss_pred ccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhhCCCCcEEEEEEchhc
Confidence 445799999999998655443321 456666655458999999999995
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=2e-15 Score=132.84 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=72.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCc------ccee--eeeEEEEEecCc--eEEEEeCCCCCCCCCCc---h
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYA------FTTK--SLFVGHTDYKYL--RYQVIDTPGILDRPFED---R 233 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~------~tt~--~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~---~ 233 (293)
..++|+++|.+|+|||||+|+|++.......++ ..|. +.....+..++. .+.+|||||+.+..... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 457999999999999999999998876654442 2333 333333344443 78999999997642211 1
Q ss_pred ---hHHHHHHHHHhhc------------cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 234 ---NIIEMCSITALAH------------LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 234 ---~~~e~~~~~~l~~------------~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+..+.-..+.. .+|++++++|.+.. ++...+ ..+++.+.. +.|+++|+||+|+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d-~~~l~~l~~---~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLD-IEFMKRLHE---KVNIIPLIAKADT 156 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHH-HHHHHHHTT---TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHH-HHHHHHHhc---cCCEEEEEeccCC
Confidence 1111111111111 14689999988763 334333 356777665 7899999999995
No 141
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=4.9e-16 Score=127.97 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=72.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCch---hHHHHHHHHHh-
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDR---NIIEMCSITAL- 244 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~---~~~e~~~~~~l- 244 (293)
++|+++|.+|||||||+|++++..+.....+++|...... .+. .+.+|||||+.+...... ..+.......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988777777776654433 333 689999999755332221 11111111112
Q ss_pred --hccCcEEEEEEeCCCCCCCCHH-HHH----------HHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 --AHLRSAVLFFLDISGSCGYSIA-QQA----------ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 --~~~~d~il~v~D~s~~~~~~~~-~~~----------~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+.++++++|+|.++ +... +.| .++..+.. .+.|+++|+||+|+
T Consensus 78 ~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl 134 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKA---APEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDK 134 (190)
T ss_dssp HHGGGCCEEEEEEETTH---HHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGG
T ss_pred hhhccCCEEEEEEcchh---hhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhc
Confidence 233456777777653 2211 111 12223332 47999999999996
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.63 E-value=4e-16 Score=146.27 Aligned_cols=121 Identities=22% Similarity=0.306 Sum_probs=80.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHH----HHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIE----MCSI 241 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e----~~~~ 241 (293)
...+|+++|.+|||||||+|+|++.... +++++++|.+...+.+.+++..+.+|||||+...........+ ....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4579999999999999999999998764 7889999999999999999999999999998432111000000 0112
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. ...+|++++|+|+++..+ ..+ ..+...+.. .+.|+++|+||+|+
T Consensus 259 ~~-i~~ad~vllv~d~~~~~~--~~~-~~i~~~l~~--~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 259 DS-IEKADVVVIVLDATQGIT--RQD-QRMAGLMER--RGRASVVVFNKWDL 304 (439)
T ss_dssp HH-HHHCSEEEEEEETTTCCC--HHH-HHHHHHHHH--TTCEEEEEEECGGG
T ss_pred HH-HhhCCEEEEEEeCCCCCC--HHH-HHHHHHHHH--cCCCEEEEEECccC
Confidence 22 234699999999998543 222 234444443 47999999999995
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=3.4e-16 Score=145.53 Aligned_cols=119 Identities=27% Similarity=0.333 Sum_probs=80.3
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeeeeEEEEEecCc-eEEEEeCCCCCCCCCCchhHHHHHHHHH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSLFVGHTDYKYL-RYQVIDTPGILDRPFEDRNIIEMCSITA 243 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~~~~~~~~~~~-~~~iiDTpG~~~~~~~~~~~~e~~~~~~ 243 (293)
...++|+++|.+|+|||||+|+|++..+. +++.+++|.+.....+.+.+. .+.+|||||+.+......... .....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~--~~~~~ 109 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV--EKARR 109 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH--HHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH--HHHHH
Confidence 35679999999999999999999998874 677889999998888888776 899999999987542211111 11223
Q ss_pred hhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++. ... ...|+..+.. .+.|+++|+||+|+
T Consensus 110 ~l~~aD~vllVvD~~~----~~~-~~~~l~~l~~--~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 110 VFYRADCGILVTDSAP----TPY-EDDVVNLFKE--MEIPFVVVVNKIDV 152 (423)
T ss_dssp HHTSCSEEEEECSSSC----CHH-HHHHHHHHHH--TTCCEEEECCCCTT
T ss_pred HHhcCCEEEEEEeCCC----hHH-HHHHHHHHHh--cCCCEEEEEeCcCC
Confidence 3445799999999922 222 2367777766 48999999999996
No 144
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=1.1e-15 Score=145.26 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=84.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
...+|+++|.+|||||||+|+|++..+. . ..+|.+.....+.+++..+.+|||||..+.... ...+..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~~~~~~ 388 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-T--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL---------WRHYYT 388 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC-C--CCCCSSEEEEEEESSSCEEEEEEECCCGGGSGG---------GGGGGT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC-C--cCCccceeEEEEEeCCEEEEEEECCCcHHHHHH---------HHHHhc
Confidence 4579999999999999999999988743 2 234777888888888899999999997322110 122345
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
.+|++|+|+|++++.++.... .++.++... ..+.|+++|+||+|+
T Consensus 389 ~ad~~i~V~D~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl 435 (497)
T 3lvq_E 389 GTQGLIFVVDCADRDRIDEAR--QELHRIINDREMRDAIILIFANKQDL 435 (497)
T ss_dssp TCCEEEEEEETTCGGGHHHHH--HHHHHHHTSGGGTTCEEEEEEECCSS
T ss_pred cCCEEEEEEECcchhHHHHHH--HHHHHHhhhhhcCCCcEEEEEECCCC
Confidence 579999999999976655443 455555332 257999999999996
No 145
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.60 E-value=1.4e-14 Score=132.02 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=74.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc------cccCcc----------------------ceeee-------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD------VQPYAF----------------------TTKSL------------- 205 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~------~~~~~~----------------------tt~~~------------- 205 (293)
..++|+++|.+|||||||+|+|++..+. ++..|. +|.+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5679999999999999999999998763 222232 22210
Q ss_pred -----------eEEEEEecCceEEEEeCCCCCCCCC----Cc-hhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHH
Q 040152 206 -----------FVGHTDYKYLRYQVIDTPGILDRPF----ED-RNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQA 269 (293)
Q Consensus 206 -----------~~~~~~~~~~~~~iiDTpG~~~~~~----~~-~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~ 269 (293)
.......++..+.||||||+...+. .+ ...+.......+....+++++|+|++.. +...+..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~~~~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANSDAL 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGCHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchhHHH
Confidence 0000111235799999999976432 11 1122222223333445678888888763 3222222
Q ss_pred HHHHHHhhccCCCcEEEEEeccCC
Q 040152 270 ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 270 ~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+++.+.. .+.|+++|+||+|+
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl 209 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDL 209 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGG
T ss_pred HHHHHhCc--CCCceEEEeccccc
Confidence 46666654 47899999999995
No 146
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.59 E-value=3.2e-15 Score=124.79 Aligned_cols=115 Identities=19% Similarity=0.230 Sum_probs=80.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc--eEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL--RYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|++|||||||++++++..+.....+..+.+...+.+.+++. .+.+|||||....... ...+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~---------~~~~~ 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI---------TSAYY 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC---------CHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh---------hHHHH
Confidence 468999999999999999999998876555555555666777777775 4688999997332110 11233
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++..++... ..|+..+... ..+.|+++|+||+|+
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~i~~v~nK~Dl 122 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENV--ERWLKELRDHADSNIVIMLVGNKSDL 122 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTH--HHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred hcCCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCeEEEEEECccc
Confidence 456899999999986543322 2456555443 246899999999996
No 147
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.59 E-value=3e-15 Score=134.05 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=75.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCccc-ccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDV-QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLR 248 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~-~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~ 248 (293)
+|+++|.+|||||||++++.+..... ......|.+.....+. ....++||||||+.+.... .+ ....+...+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~---~l---~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP---SY---DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC---SH---HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch---hh---hhhhhccCC
Confidence 58999999999999999887654321 1112334444433332 2367999999999543110 01 113345678
Q ss_pred cEEEEEEeCCCCCCCCHHHHH-HHHHHHhhccCCCcEEEEEeccCC
Q 040152 249 SAVLFFLDISGSCGYSIAQQA-ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 249 d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+++++|+|++++ .+.....+ +|+.++....++.|+++|+||+||
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL 118 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc
Confidence 999999999997 33333322 345555444468999999999997
No 148
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=1.2e-15 Score=140.96 Aligned_cols=89 Identities=30% Similarity=0.451 Sum_probs=47.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe---------------------c---CceEEEEeCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY---------------------K---YLRYQVIDTPGI 225 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~---------------------~---~~~~~iiDTpG~ 225 (293)
+|+++|.||||||||+|+|++....++++||||.++..+...+ + ..++++|||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 7999999999999999999998866889999999888876432 2 246899999998
Q ss_pred CCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCC
Q 040152 226 LDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGS 260 (293)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~ 260 (293)
.......+ .+..+.+ .....+|++++|+|+++.
T Consensus 82 ~~~a~~~~-~l~~~~l-~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEGR-GLGNKFL-DDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CC-CSSTTCSEEEEEEETTCC
T ss_pred ccchhhhh-hHHHHHH-HHHhcCCEEEEEEecccc
Confidence 64221111 0111111 123457999999999875
No 149
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=5.2e-15 Score=142.15 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=77.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc---cccCccceeeeeEEEE---------------------------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD---VQPYAFTTKSLFVGHT--------------------------------- 210 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~---~~~~~~tt~~~~~~~~--------------------------------- 210 (293)
..++|+++|.+|||||||+|+|++..+. ++..+.|+........
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4679999999999999999999998874 5666666543221110
Q ss_pred ---EecC---ceEEEEeCCCCCCCCCCchhH---HHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCC
Q 040152 211 ---DYKY---LRYQVIDTPGILDRPFEDRNI---IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMN 281 (293)
Q Consensus 211 ---~~~~---~~~~iiDTpG~~~~~~~~~~~---~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~ 281 (293)
.+.+ ..+.||||||+.+......+. +. .....+...+|++++|+|+++..... . ...++..+.. .+
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~-~~~~~~l~~aD~il~VvDa~~~~~~~-~-~~~~l~~l~~--~~ 218 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFP-AVLRWFAERVDLIILLFDAHKLEISD-E-FSEAIGALRG--HE 218 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHH-HHHHHHHHHCSEEEEEEETTSCCCCH-H-HHHHHHHTTT--CG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHH-HHHHHHHHhCCEEEEEEeCCcCCCCH-H-HHHHHHHHHh--cC
Confidence 0111 358999999997521110000 11 11222344579999999998743222 2 2256776665 36
Q ss_pred CcEEEEEeccCC
Q 040152 282 KPLIIVCNKTDL 293 (293)
Q Consensus 282 ~piivV~NK~Dl 293 (293)
.|+++|+||+|+
T Consensus 219 ~pvilVlNK~Dl 230 (550)
T 2qpt_A 219 DKIRVVLNKADM 230 (550)
T ss_dssp GGEEEEEECGGG
T ss_pred CCEEEEEECCCc
Confidence 899999999995
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.56 E-value=4.9e-15 Score=141.54 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=79.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC------------------cc----cccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD------------------VD----VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~------------------~~----~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
.++|+++|.+|||||||+|+|+... .. ....+++|.......+.+++..++||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4589999999999999999996211 10 1112456777777888888999999999998
Q ss_pred CCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 226 LDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+... ..... ...+|++|+|+|+++....... .++..+.. .+.|+++|+||+|+
T Consensus 93 ~df~~--------~~~~~-l~~aD~allVvDa~~g~~~~t~---~~~~~~~~--~~iPiivviNK~Dl 146 (528)
T 3tr5_A 93 ADFTE--------DTYRT-LTAVDSALMVIDAAKGVEPRTI---KLMEVCRL--RHTPIMTFINKMDR 146 (528)
T ss_dssp TTCCH--------HHHHG-GGGCSEEEEEEETTTCSCHHHH---HHHHHHHT--TTCCEEEEEECTTS
T ss_pred hhHHH--------HHHHH-HHhCCEEEEEEeCCCCCCHHHH---HHHHHHHH--cCCCEEEEEeCCCC
Confidence 65431 12223 3457999999999985433222 34445544 47899999999996
No 151
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.56 E-value=3e-14 Score=130.13 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=77.2
Q ss_pred CCCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeee-------------------------------------
Q 040152 164 IDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLF------------------------------------- 206 (293)
Q Consensus 164 ~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~------------------------------------- 206 (293)
+....+.|+|+|.+|||||||+|+|+|..+.......+|..+.
T Consensus 30 i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (360)
T 3t34_A 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQD 109 (360)
T ss_dssp --CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHH
Confidence 3346679999999999999999999998763222222221110
Q ss_pred ------------------EEEEEecCceEEEEeCCCCCCCCC-----CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCC
Q 040152 207 ------------------VGHTDYKYLRYQVIDTPGILDRPF-----EDRNIIEMCSITALAHLRSAVLFFLDISGSCGY 263 (293)
Q Consensus 207 ------------------~~~~~~~~~~~~iiDTpG~~~~~~-----~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~ 263 (293)
..........+.+|||||+.+... .....+. .....+...+|++++|+|+++....
T Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~-~~~~~~i~~~d~iilvv~~~~~~~~ 188 (360)
T 3t34_A 110 ETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIE-NMVRSYIEKPNCIILAISPANQDLA 188 (360)
T ss_dssp HHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHH-HHHHHHHHSSSEEEEEEEETTSCGG
T ss_pred HHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHH-HHHHHHhhcCCeEEEEeecccCCcC
Confidence 000111234689999999977522 1122222 2223445567999999998764322
Q ss_pred CHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 264 SIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 264 ~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. ...+.++..+.. .+.|+++|+||+|+
T Consensus 189 ~-~~~~~l~~~~~~--~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 189 T-SDAIKISREVDP--SGDRTFGVLTKIDL 215 (360)
T ss_dssp G-CHHHHHHHHSCT--TCTTEEEEEECGGG
T ss_pred C-HHHHHHHHHhcc--cCCCEEEEEeCCcc
Confidence 2 222355666554 47899999999995
No 152
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.55 E-value=3.4e-15 Score=141.29 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=82.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH 246 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~ 246 (293)
+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+.+++..+.||||||+.+..... .....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~---------~~~~~ 73 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR---------ARGAQ 73 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB---------CSSSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH---------HHHHh
Confidence 567899999999999999999998766555556677776666677777889999999986543221 11244
Q ss_pred cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 247 LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 247 ~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+|++++|+|+++.......+. +..+.. .+.|+++|+||+|+
T Consensus 74 ~aD~aILVVda~~g~~~qT~e~---l~~~~~--~~vPiIVviNKiDl 115 (501)
T 1zo1_I 74 ATDIVVLVVAADDGVMPQTIEA---IQHAKA--AQVPVVVAVNKIDK 115 (501)
T ss_dssp SCSSEEEEEETTTBSCTTTHHH---HHHHHH--TTCCEEEEEECSSS
T ss_pred hCCEEEEEeecccCccHHHHHH---HHHHHh--cCceEEEEEEeccc
Confidence 5799999999988543333332 333333 47899999999996
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.55 E-value=7e-16 Score=147.16 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=84.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe-cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-KYLRYQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
+.++|+++|.+|+|||||+++|.+..+.....+++|.+.....+.+ ++..++||||||+.+...... ...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~---------~~~ 73 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA---------RGT 73 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB---------SSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH---------HHH
Confidence 4678999999999999999999988877667788888877777766 456899999999855432211 133
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+|++++|+|+++...... ...+..+.. .+.|+++|+||+|+
T Consensus 74 ~~aD~vILVVDa~dg~~~qt---~e~l~~~~~--~~vPiIVViNKiDl 116 (537)
T 3izy_P 74 QVTDIVILVVAADDGVMKQT---VESIQHAKD--AHVPIVLAINKCDK 116 (537)
T ss_dssp BSBSSCEEECBSSSCCCHHH---HHHHHHHHT--TTCCEEECCBSGGG
T ss_pred ccCCEEEEEEECCCCccHHH---HHHHHHHHH--cCCcEEEEEecccc
Confidence 45799999999998543222 234444444 47899999999995
No 154
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.55 E-value=1.2e-14 Score=143.22 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccc--------------eeeeeEE-----------------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFT--------------TKSLFVG----------------------- 208 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~t--------------t~~~~~~----------------------- 208 (293)
..++|+|+|.+|+|||||+|+|+|..+. ++..|.| |.....+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4568999999999999999999998865 3444544 2111000
Q ss_pred ----------------EEEecC----ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHH
Q 040152 209 ----------------HTDYKY----LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ 268 (293)
Q Consensus 209 ----------------~~~~~~----~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~ 268 (293)
.+.++. ..+.||||||+.+... .. .....+...+|++|||+|++++.+.....
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-----~~-~~~~~~i~~aD~vL~Vvda~~~~s~~e~~- 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-----RN-ELSLGYVNNCHAILFVMRASQPCTLGERR- 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-----CH-HHHTHHHHSSSEEEEEEETTSTTCHHHHH-
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-----HH-HHHHHHHHhCCEEEEEEeCCCccchhHHH-
Confidence 000010 3689999999843210 11 11122334579999999998865432221
Q ss_pred HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 269 AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 269 ~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.|...+.. .+.|+++|+||+|+
T Consensus 221 -~l~~~l~~--~~~~iiiVlNK~Dl 242 (695)
T 2j69_A 221 -YLENYIKG--RGLTVFFLVNAWDQ 242 (695)
T ss_dssp -HHHHHTTT--SCCCEEEEEECGGG
T ss_pred -HHHHHHHh--hCCCEEEEEECccc
Confidence 23334443 36789999999995
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.54 E-value=2.3e-14 Score=119.02 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=81.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCce--EEEEeCCCCCCCCCCchhHHHHHHHHHhh
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLR--YQVIDTPGILDRPFEDRNIIEMCSITALA 245 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~iiDTpG~~~~~~~~~~~~e~~~~~~l~ 245 (293)
..+|+++|++|||||||++++++..+.....++.+.+...+.+.+++.. +++|||||+....... ....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~---------~~~~ 99 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT---------SAYY 99 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC---------HHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh---------HHHh
Confidence 4689999999999999999999988765556666666677788887765 4679999984422111 1223
Q ss_pred ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc-cCCCcEEEEEeccCC
Q 040152 246 HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL-FMNKPLIIVCNKTDL 293 (293)
Q Consensus 246 ~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~-~~~~piivV~NK~Dl 293 (293)
..++++++|+|.++..++.... .|+..+... ..+.|+++|+||+|+
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~i~~v~nK~Dl 146 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVE--RWLKELRDHADSNIVIMLVGNKSDL 146 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHH--HHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred hcCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEECccc
Confidence 4468999999998854432222 455555432 246899999999996
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.54 E-value=5e-14 Score=131.92 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=77.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-------------------------------cccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-------------------------------VQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-------------------------------~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|.+|+|||||+++|++.... ....+++|.+.....+.+++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 4569999999999999999999543211 112256788888888888888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCC---CCHHHH-HHHHHHHhhccCCCc-EEEEEec
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCG---YSIAQQ-AALFHSIKSLFMNKP-LIIVCNK 290 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~---~~~~~~-~~~l~~l~~~~~~~p-iivV~NK 290 (293)
.+.||||||+.+. .... ......+|++++|+|+++... ++...| .+.+..+.. .+.| +++|+||
T Consensus 96 ~~~iiDTPGh~~f--------~~~~-~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHKSF--------VPNM-IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChHHH--------HHHH-HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 9999999998321 1122 223345799999999998532 111111 122333332 3566 9999999
Q ss_pred cCC
Q 040152 291 TDL 293 (293)
Q Consensus 291 ~Dl 293 (293)
+|+
T Consensus 165 ~Dl 167 (439)
T 3j2k_7 165 MDD 167 (439)
T ss_pred CCC
Confidence 996
No 157
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.54 E-value=2.5e-14 Score=137.23 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEE------EEEe----cCceEEEEeCCCCCCCCCCchhH
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVG------HTDY----KYLRYQVIDTPGILDRPFEDRNI 235 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~------~~~~----~~~~~~iiDTpG~~~~~~~~~~~ 235 (293)
....+|+++|.+|||||||+|++++..+.....+....+.... .+.. .+..+.+|||||........
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~--- 115 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH--- 115 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC---
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH---
Confidence 3567999999999999999999999886422222111111111 1122 24679999999964322111
Q ss_pred HHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 236 IEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 236 ~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+...+|++++|+|+++. . ....|+.++.....+.|+++|+||+|+
T Consensus 116 ------~~~l~~~d~ii~V~D~s~~---~--~~~~~~~~l~~~~~~~pvilV~NK~Dl 162 (535)
T 3dpu_A 116 ------QFFMTRSSVYMLLLDSRTD---S--NKHYWLRHIEKYGGKSPVIVVMNKIDE 162 (535)
T ss_dssp ------HHHHHSSEEEEEEECGGGG---G--GHHHHHHHHHHHSSSCCEEEEECCTTT
T ss_pred ------HHHccCCcEEEEEEeCCCc---h--hHHHHHHHHHHhCCCCCEEEEEECCCc
Confidence 1123347999999999863 2 223677777776567999999999996
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.3e-14 Score=141.03 Aligned_cols=118 Identities=20% Similarity=0.208 Sum_probs=79.5
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCccccc-------------------------------CccceeeeeEEEEEecC
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQP-------------------------------YAFTTKSLFVGHTDYKY 214 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~-------------------------------~~~tt~~~~~~~~~~~~ 214 (293)
....+|+++|.+|+|||||+|+|++....+.. .+++|.+.....+..++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 35679999999999999999999876433221 24678888888888888
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCC---CCCCHHHHH-HHHHHHhhccCCCcEEEEEec
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGS---CGYSIAQQA-ALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~---~~~~~~~~~-~~l~~l~~~~~~~piivV~NK 290 (293)
..+.||||||+.+ . . .........+|++|+|+|+++. .++....+. ..+..+.. ....|+|+|+||
T Consensus 245 ~~~~iiDTPG~e~-----f---~-~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNK 314 (611)
T 3izq_1 245 ANFTIVDAPGHRD-----F---V-PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNK 314 (611)
T ss_dssp CEEEEEECCSSSC-----H---H-HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEEC
T ss_pred ceEEEEECCCCcc-----c---H-HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEec
Confidence 8999999999832 1 1 1122334557999999999873 222211121 22222222 123459999999
Q ss_pred cCC
Q 040152 291 TDL 293 (293)
Q Consensus 291 ~Dl 293 (293)
+|+
T Consensus 315 iDl 317 (611)
T 3izq_1 315 MDN 317 (611)
T ss_dssp TTT
T ss_pred ccc
Confidence 996
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.53 E-value=2.6e-14 Score=135.46 Aligned_cols=117 Identities=20% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-------------------------------ccccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-------------------------------DVQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-------------------------------~~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|.+|+|||||+++|++... .....+++|.+.....+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 456899999999999999999975411 1122346677777777788888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCH---HHHH-HHHHHHhhccCCCcEEEEEecc
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSI---AQQA-ALFHSIKSLFMNKPLIIVCNKT 291 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~---~~~~-~~l~~l~~~~~~~piivV~NK~ 291 (293)
.+.||||||+.+ . . .........+|++|+|+|+++...+.. ..+. +.+..+.. ....|+|+|+||+
T Consensus 112 ~~~iiDTPG~~~-----f---~-~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHRD-----F---V-PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCGG-----G---H-HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECG
T ss_pred eEEEEECCCcHH-----H---H-HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECc
Confidence 999999999822 1 1 112233455799999999998533211 1122 22222222 2235799999999
Q ss_pred CC
Q 040152 292 DL 293 (293)
Q Consensus 292 Dl 293 (293)
|+
T Consensus 182 Dl 183 (483)
T 3p26_A 182 DN 183 (483)
T ss_dssp GG
T ss_pred Cc
Confidence 96
No 160
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.51 E-value=3.2e-14 Score=134.77 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=73.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC-------cccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD-------VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCS 240 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~-------~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~ 240 (293)
..+|+++|.+|+|||||+++|++.. ...+..+++|.+.....+.+++..+.+|||||+ + .+. ..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh------~--~~~-~~ 89 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH------A--DLI-RA 89 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH------H--HHH-HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh------H--HHH-HH
Confidence 4689999999999999999999876 223445677877777777888889999999997 1 111 12
Q ss_pred HHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 241 ITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 241 ~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.......+|++++|+|+++.. .... .+.+..+.. .+.|+++|+||+|+
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~--~~qt-~e~l~~~~~--~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGP--KTQT-GEHMLILDH--FNIPIIVVITKSDN 137 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCS--CHHH-HHHHHHHHH--TTCCBCEEEECTTS
T ss_pred HHHHHhhCCEEEEEEecCCCc--cHHH-HHHHHHHHH--cCCCEEEEEECCCc
Confidence 233445579999999998743 2221 123333333 36889999999996
No 161
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.51 E-value=5e-13 Score=131.67 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=80.1
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeee---------------------------------------
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLF--------------------------------------- 206 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~--------------------------------------- 206 (293)
...++|+|+|.+|+|||||+|+|+|..+.......+|+.+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 35679999999999999999999998764322222332111
Q ss_pred ------------EEEEEe-cCceEEEEeCCCCCCCCC----C-chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHH
Q 040152 207 ------------VGHTDY-KYLRYQVIDTPGILDRPF----E-DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQ 268 (293)
Q Consensus 207 ------------~~~~~~-~~~~~~iiDTpG~~~~~~----~-~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~ 268 (293)
.-.+.. +...+.|+||||+...+. . ....+.......+...+|++++|+|++........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-- 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-- 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH--
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH--
Confidence 001111 123588999999987431 1 11223322233444567999999999985444332
Q ss_pred HHHHHHHhhccCCCcEEEEEeccCC
Q 040152 269 AALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 269 ~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.++..+.. .+.|+++|+||+|+
T Consensus 207 l~ll~~L~~--~g~pvIlVlNKiDl 229 (772)
T 3zvr_A 207 LKIAKEVDP--QGQRTIGVITKLDL 229 (772)
T ss_dssp HHHHHHHCT--TCSSEEEEEECTTS
T ss_pred HHHHHHHHh--cCCCEEEEEeCccc
Confidence 356667665 47899999999996
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.49 E-value=8e-14 Score=129.27 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC--------Ccc---c------ccCccceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA--------DVD---V------QPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~--------~~~---~------~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
...+|+++|.+|+|||||+++|++. .+. . ....+.|.+.....+..++..+.+|||||+.+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 3468999999999999999999873 111 0 012345665555556666788999999998321
Q ss_pred CCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 230 FEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
... .......+|++++|+|+++...... .+++..+.. .+.| +++|+||+|+
T Consensus 89 -------~~~-~~~~~~~aD~~ilVvda~~g~~~qt---~~~l~~~~~--~~ip~iivviNK~Dl 140 (405)
T 2c78_A 89 -------IKN-MITGAAQMDGAILVVSAADGPMPQT---REHILLARQ--VGVPYIVVFMNKVDM 140 (405)
T ss_dssp -------HHH-HHHHHTTCSSEEEEEETTTCCCHHH---HHHHHHHHH--TTCCCEEEEEECGGG
T ss_pred -------HHH-HHHHHHHCCEEEEEEECCCCCcHHH---HHHHHHHHH--cCCCEEEEEEECccc
Confidence 111 2223445799999999998543222 244444444 3678 8999999996
No 163
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=124.76 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCCCCceEeecCCC---------CCCHhHHHHHHhcC---CcccccCccce--eeeeEEEE----------------Ee
Q 040152 163 SIDPNTRTILICGYP---------NVGKSSFMNKITRA---DVDVQPYAFTT--KSLFVGHT----------------DY 212 (293)
Q Consensus 163 ~~~~~~~~I~vvG~~---------~~GKSSlin~l~~~---~~~~~~~~~tt--~~~~~~~~----------------~~ 212 (293)
.......+|+++|.+ |||||||+|+|++. .+.. .+..+| .+.....+ +-
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~-~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHL-DHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCS-CCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCcccc-ccCCcccccccceeEeecccccccccccccccCC
Confidence 334456899999999 99999999999984 3332 233332 22211111 11
Q ss_pred cCceEEEEe------CCCCCCCCCCc-hhHHHHH------HHH-Hhhc---------------------cCcEEEEEEeC
Q 040152 213 KYLRYQVID------TPGILDRPFED-RNIIEMC------SIT-ALAH---------------------LRSAVLFFLDI 257 (293)
Q Consensus 213 ~~~~~~iiD------TpG~~~~~~~~-~~~~e~~------~~~-~l~~---------------------~~d~il~v~D~ 257 (293)
....++||| |||........ ...+... .+. .+.. .+|++++|+|+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 234578888 66664322100 0000000 000 0111 47999999999
Q ss_pred CCC--CCCCHHHHHHHHHHHhhc--cCCCcEEEEEeccCC
Q 040152 258 SGS--CGYSIAQQAALFHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 258 s~~--~~~~~~~~~~~l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+++ .++.... .|+.++... ..+.|+++|+||+|+
T Consensus 173 t~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl 210 (255)
T 3c5h_A 173 SRGMNRNFDDQL--KFVSNLYNQLAKTKKPIVVVLTKCDE 210 (255)
T ss_dssp BC----CHHHHH--HHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCCchhhHHHHH--HHHHHHHHHhccCCCCEEEEEEcccc
Confidence 997 6665444 566665543 257999999999996
No 164
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.48 E-value=2.5e-13 Score=129.84 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=74.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcc----------------cc------cCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVD----------------VQ------PYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~----------------~~------~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
.++|+++|.+|+|||||+++|+..... +. ...+.|.......+.+++..+++|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 458999999999999999999863211 01 12234444555667788889999999999
Q ss_pred CCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 226 LDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+... .... ....+|++++|+|+++.. .... ..++..+.. .+.|+++|+||+|+
T Consensus 93 ~df~~--------~~~~-~l~~aD~~IlVvDa~~g~--~~~t-~~~~~~~~~--~~ipiivviNK~Dl 146 (529)
T 2h5e_A 93 EDFSE--------DTYR-TLTAVDCCLMVIDAAKGV--EDRT-RKLMEVTRL--RDTPILTFMNKLDR 146 (529)
T ss_dssp TTCCH--------HHHH-GGGGCSEEEEEEETTTCS--CHHH-HHHHHHHTT--TTCCEEEEEECTTS
T ss_pred hhHHH--------HHHH-HHHHCCEEEEEEeCCccc--hHHH-HHHHHHHHH--cCCCEEEEEcCcCC
Confidence 55421 1122 334579999999999853 2221 234444443 47899999999996
No 165
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.47 E-value=2e-13 Score=126.48 Aligned_cols=115 Identities=22% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-cccCccceeee--------------e-----EEEEEecCceEEEEeCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-VQPYAFTTKSL--------------F-----VGHTDYKYLRYQVIDTPGIL 226 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~tt~~~--------------~-----~~~~~~~~~~~~iiDTpG~~ 226 (293)
...+|+++|.+|+|||||+|+|++.... ...+..++... . ..........+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 5679999999999999999999985432 11111111100 0 00001112568999999972
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+ . . .........+|++++|+|+++..+..... +++..+... ...|+++|+||+|+
T Consensus 87 ~-----~---~-~~~~~~~~~~D~~ilVvda~~~~~~~qt~--~~~~~~~~~-~~~~iivviNK~Dl 141 (403)
T 3sjy_A 87 V-----L---M-ATMLSGAALMDGAILVVAANEPFPQPQTR--EHFVALGII-GVKNLIIVQNKVDV 141 (403)
T ss_dssp G-----G---H-HHHHHHHTTCSEEEEEEETTSCSSCHHHH--HHHHHHHHH-TCCCEEEEEECGGG
T ss_pred H-----H---H-HHHHHHHhhCCEEEEEEECCCCCCcHHHH--HHHHHHHHc-CCCCEEEEEECccc
Confidence 1 1 1 11223344579999999999865443322 344443332 24699999999996
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=2.7e-13 Score=126.85 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=72.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc-----------cccC----------------------ccceeeeeEEEEEec
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD-----------VQPY----------------------AFTTKSLFVGHTDYK 213 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~-----------~~~~----------------------~~tt~~~~~~~~~~~ 213 (293)
...+|+++|.+|+|||||+++|++.... .+.. .+.|.+.....+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 3468999999999999999999865311 0111 133444445556667
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+..+.+|||||+.+. . .........+|++++|+|+++....... +++..+... ...|+++|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f-----~----~~~~~~~~~aD~~ilVvDa~~g~~~qt~---~~l~~~~~~-~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-----T----RNMATGASTCDLAIILVDARYGVQTQTR---RHSYIASLL-GIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGG-----H----HHHHHHHTTCSEEEEEEETTTCSCHHHH---HHHHHHHHT-TCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHH-----H----HHHHHHHhhCCEEEEEEECCCCCcHHHH---HHHHHHHHc-CCCeEEEEEEcCcC
Confidence 778999999997321 1 1122234567999999999985422222 333333332 22469999999996
No 167
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.47 E-value=1.2e-13 Score=136.09 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC--Cc----------cccc------CccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA--DV----------DVQP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~--~~----------~~~~------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
..++|+++|.+|+|||||+|+|++. .. ...+ .+++|.......+.+++..++||||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4579999999999999999999841 11 0111 2456666667778888889999999999654
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. .....+ ..+|++|+|+|+++....... .++..+.. .+.|+++|+||+|+
T Consensus 89 ~~--------~~~~~l-~~aD~~llVvDa~~g~~~~~~---~~~~~~~~--~~~p~ilviNK~Dl 139 (693)
T 2xex_A 89 TV--------EVERSL-RVLDGAVTVLDAQSGVEPQTE---TVWRQATT--YGVPRIVFVNKMDK 139 (693)
T ss_dssp CH--------HHHHHH-HHCSEEEEEEETTTBSCHHHH---HHHHHHHH--TTCCEEEEEECTTS
T ss_pred HH--------HHHHHH-HHCCEEEEEECCCCCCcHHHH---HHHHHHHH--cCCCEEEEEECCCc
Confidence 21 111222 336999999999985443333 33334443 47899999999996
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.46 E-value=2.9e-13 Score=113.44 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=67.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeeeEEEEEecCceEEEEeCCCCCCC--CCCchhHHHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDR--PFEDRNIIEMCSIT 242 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~--~~~~~~~~e~~~~~ 242 (293)
...+|+++|++|||||||+|+|++..+. +.+.+++|.. .+.+.+++ .+.+|||||+... +......+.. .+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQR-ALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET-TEEEEECCCCC------CCHHHHHH-HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC-CEEEEECcCCcccccCHHHHHHHHH-HHH
Confidence 4568999999999999999999987632 3445555543 23344444 6889999998542 1111111111 111
Q ss_pred Hh---hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 AL---AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l---~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+ ...++++++|+|++.+.+.... .+...+.. .+.|+++|+||+|+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~---~~~~~~~~--~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ---QMIEWAVD--SNIAVLVLLTKADK 149 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH---HHHHHHHH--TTCCEEEEEECGGG
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH---HHHHHHHH--cCCCeEEEEecccC
Confidence 11 1345899999999986543221 22222222 47899999999995
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.46 E-value=2e-13 Score=126.25 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=73.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC-------cc---------cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD-------VD---------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~-------~~---------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
..+|+++|.+|+|||||+++|++.. +. .....+.|.+.....+..++..+.+|||||+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~----- 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA----- 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH-----
Confidence 3589999999999999999998631 10 00123455555444555566789999999972
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
. +. .........+|++++|+|+++....... +.+..+.. .+.| +++|+||+|+
T Consensus 78 -~--f~-~~~~~~~~~aD~~ilVvda~~g~~~qt~---e~l~~~~~--~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 78 -D--YV-KNMITGTAPLDGCILVVAANDGPMPQTR---EHLLLARQ--IGVEHVVVYVNKADA 131 (397)
T ss_dssp -H--HH-HHHHHTSSCCSEEEEEEETTTCSCHHHH---HHHHHHHH--TTCCCEEEEEECGGG
T ss_pred -H--HH-HHHHhhHhhCCEEEEEEECCCCCCHHHH---HHHHHHHH--cCCCeEEEEEECccc
Confidence 1 11 1223344567999999999985432222 33333333 3678 7899999995
No 170
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.46 E-value=1.3e-13 Score=127.93 Aligned_cols=120 Identities=28% Similarity=0.494 Sum_probs=84.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhcc
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-LRYQVIDTPGILDRPFEDRNIIEMCSITALAHL 247 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~ 247 (293)
..|+++|++|||||||+++|++..+.+++++++|..+..+.+.+++ ..+.++||||+.+....... +....... ...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~-L~~~fl~~-~er 235 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG-LGLEFLRH-IAR 235 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC-SCHHHHHH-HTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh-hhHHHHHH-HHH
Confidence 4689999999999999999999988888999999999999888876 77999999999753211100 00111122 234
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc---cCCCcEEEEEeccCC
Q 040152 248 RSAVLFFLDISGSCGYSIAQQAALFHSIKSL---FMNKPLIIVCNKTDL 293 (293)
Q Consensus 248 ~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~---~~~~piivV~NK~Dl 293 (293)
++.+++|+|++ ...+...+ .+.+++..+ ....|.++|+||+|+
T Consensus 236 a~~lL~vvDls-~~~~~~ls--~g~~el~~la~aL~~~P~ILVlNKlDl 281 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLE--TLRKEVGAYDPALLRRPSLVALNKVDL 281 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHH--HHHHHHHHHCHHHHHSCEEEEEECCTT
T ss_pred HHhhhEEeCCc-cCCHHHHH--HHHHHHHHHhHHhhcCCEEEEEECCCh
Confidence 69999999998 22222221 233333322 236899999999996
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.45 E-value=1.2e-13 Score=133.47 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=71.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe------------------cCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY------------------KYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~------------------~~~~~~iiDTpG~~~~ 228 (293)
+.++|+++|++|+|||||+++|.+..+......+.|.+.......+ ....++||||||+.+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4678999999999999999999876543211112333322222221 1125899999999665
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..... .....+|++++|+|+++.. .... ...+..+.. .+.|+++|+||+|+
T Consensus 84 ~~~~~---------r~~~~aD~aILVvDa~~Gv--~~qT-~e~l~~l~~--~~vPiIVViNKiDl 134 (594)
T 1g7s_A 84 TTLRK---------RGGALADLAILIVDINEGF--KPQT-QEALNILRM--YRTPFVVAANKIDR 134 (594)
T ss_dssp TTSBC---------SSSBSCSEEEEEEETTTCC--CHHH-HHHHHHHHH--TTCCEEEEEECGGG
T ss_pred HHHHH---------HHHhhCCEEEEEEECCCCc--cHhH-HHHHHHHHH--cCCeEEEEeccccc
Confidence 32211 1234579999999999843 3222 233334443 47899999999995
No 172
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=8.2e-14 Score=126.71 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=63.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecC-----------------ceEEEEeCCCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKY-----------------LRYQVIDTPGILDRPFE 231 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~iiDTpG~~~~~~~ 231 (293)
.+|+++|.||||||||+|+|++..+.++++||+|.++..+.+.+++ ..+++|||||+......
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 4799999999999999999999987789999999999988888776 46999999999643211
Q ss_pred chhHHHHHHHHHhhccCcEEEEEEeCCCC
Q 040152 232 DRNIIEMCSITALAHLRSAVLFFLDISGS 260 (293)
Q Consensus 232 ~~~~~e~~~~~~l~~~~d~il~v~D~s~~ 260 (293)
.+ .+....+.. ...+|++++|+|+++.
T Consensus 83 ~~-gl~~~fl~~-ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 83 GE-GLGNKFLAN-IRETDAIGHVVRCFEN 109 (363)
T ss_dssp HG-GGTCCHHHH-HHTCSEEEEEEECSCC
T ss_pred cc-hHHHHHHHH-HHhcCeEEEEEecCCC
Confidence 00 010011222 3457999999999873
No 173
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.44 E-value=4.6e-13 Score=124.35 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=71.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc---ccccCccceeeeeEEEEEec-----------------------CceEEEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV---DVQPYAFTTKSLFVGHTDYK-----------------------YLRYQVI 220 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~---~~~~~~~tt~~~~~~~~~~~-----------------------~~~~~ii 220 (293)
...+|+++|.+|+|||||+++|++... .....++.|.+.......+. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 456899999999999999999996542 22233455655443332220 1568999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCC-CHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 221 DTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGY-SIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~-~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
||||+ + .+... +......+|++++|+|+++.... ...+.+.++..+ ...|+++|+||+|+
T Consensus 89 DtPGh------~--~f~~~-~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~----~~~~iivviNK~Dl 149 (410)
T 1kk1_A 89 DAPGH------E--ALMTT-MLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----GQKNIIIAQNKIEL 149 (410)
T ss_dssp ECSSH------H--HHHHH-HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----TCCCEEEEEECGGG
T ss_pred ECCCh------H--HHHHH-HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc----CCCcEEEEEECccC
Confidence 99997 1 11111 22223456999999999985311 122222222222 24689999999996
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.43 E-value=2.3e-13 Score=124.60 Aligned_cols=101 Identities=10% Similarity=0.110 Sum_probs=70.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCc
Q 040152 170 TILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRS 249 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d 249 (293)
+|+++|.+|+|||||+++|+ ..++|.+.....+.+++..+.+|||||+.+.. .........+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~---------~~~~~~~~~aD 85 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL---------KSLITALNISD 85 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH---------HHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH---------HHHHHHHHHCC
Confidence 89999999999999999998 23456666666777778889999999984421 11122235579
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcE-EEEEe-ccCC
Q 040152 250 AVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPL-IIVCN-KTDL 293 (293)
Q Consensus 250 ~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~pi-ivV~N-K~Dl 293 (293)
++++|+| +.. ..... .+++..+.. .+.|. ++|+| |+|+
T Consensus 86 ~ailVvd-~~g--~~~qt-~e~~~~~~~--~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 86 IAVLCIP-PQG--LDAHT-GECIIALDL--LGFKHGIIALTRSDST 125 (370)
T ss_dssp EEEEEEC-TTC--CCHHH-HHHHHHHHH--TTCCEEEEEECCGGGS
T ss_pred EEEEEEc-CCC--CcHHH-HHHHHHHHH--cCCCeEEEEEEeccCC
Confidence 9999999 543 22221 133433333 36777 99999 9996
No 175
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.43 E-value=1.3e-13 Score=128.91 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=69.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC--Ccc-----------------------------cccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA--DVD-----------------------------VQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~--~~~-----------------------------~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|.+|+|||||+++|++. .+. .....++|.+.....+.+++.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3468999999999999999999864 121 001345677776667777888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHH----HHH-HHHHHHhhccCCCcEEEEEec
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIA----QQA-ALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~----~~~-~~l~~l~~~~~~~piivV~NK 290 (293)
.+.+|||||+.+. . .........+|++++|+|+++. +++.. .+. +.+..+.. ....|+++|+||
T Consensus 85 ~~~iiDtpG~~~f--------~-~~~~~~~~~aD~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~-~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRDF--------V-KNMITGASQADAAILVVSAKKG-EYEAGMSVEGQTREHIILAKT-MGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTTH--------H-HHHHHTSSCCSEEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHH-TTCTTCEEEEEC
T ss_pred EEEEEECCCcHHH--------H-HHHHhhhhhcCEEEEEEECCCC-ccccccccchHHHHHHHHHHH-cCCCeEEEEEEc
Confidence 9999999998431 1 1123344567999999999983 22110 011 22222222 122469999999
Q ss_pred cCC
Q 040152 291 TDL 293 (293)
Q Consensus 291 ~Dl 293 (293)
+|+
T Consensus 154 ~Dl 156 (435)
T 1jny_A 154 MDL 156 (435)
T ss_dssp GGG
T ss_pred ccC
Confidence 996
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.43 E-value=3.1e-13 Score=133.19 Aligned_cols=113 Identities=20% Similarity=0.206 Sum_probs=73.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC--c----c------ccc------CccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD--V----D------VQP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~--~----~------~~~------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
..++|+++|.+|+|||||+++|+... . . ..+ ..+.|.......+.+++..+++|||||+.+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45799999999999999999998311 0 0 111 2345666666777888889999999999543
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. . .....+ ..+|++++|+|+++........ .+..+.. .+.|+++|+||+|+
T Consensus 91 ~----~----~~~~~l-~~aD~~ilVvDa~~g~~~~t~~---~~~~~~~--~~~p~ivviNKiD~ 141 (691)
T 1dar_A 91 T----I----EVERSM-RVLDGAIVVFDSSQGVEPQSET---VWRQAEK--YKVPRIAFANKMDK 141 (691)
T ss_dssp H----H----HHHHHH-HHCSEEEEEEETTTCSCHHHHH---HHHHHHH--TTCCEEEEEECTTS
T ss_pred H----H----HHHHHH-HHCCEEEEEEECCCCcchhhHH---HHHHHHH--cCCCEEEEEECCCc
Confidence 1 1 111222 3469999999999865443333 2333333 47999999999996
No 177
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.42 E-value=8e-13 Score=122.65 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=68.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc---ccccCccceeeeeEEEEEe---------------c--------CceEEEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV---DVQPYAFTTKSLFVGHTDY---------------K--------YLRYQVI 220 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~---~~~~~~~tt~~~~~~~~~~---------------~--------~~~~~ii 220 (293)
...+|+++|.+++|||||+++|++... .....++.|.+.......+ + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 457999999999999999999996542 2222344555443222211 1 1568999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 221 DTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
||||+ + .+. .........+|++++|+|+++.... ... .+.+..+... ...|+++|+||+|+
T Consensus 87 DtPGh------~--~f~-~~~~~~~~~~D~~ilVvda~~g~~~-~qt-~e~l~~~~~l-~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 87 DSPGH------E--TLM-ATMLSGASLMDGAILVIAANEPCPQ-PQT-KEHLMALEIL-GIDKIIIVQNKIDL 147 (408)
T ss_dssp ECSSH------H--HHH-HHHHTTCSCCSEEEEEEETTSCSSC-HHH-HHHHHHHHHT-TCCCEEEEEECTTS
T ss_pred ECCCH------H--HHH-HHHHHhHhhCCEEEEEEECCCCCCC-chh-HHHHHHHHHc-CCCeEEEEEEccCC
Confidence 99997 2 111 1122223346999999999985311 111 1222222221 24589999999996
No 178
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=1.3e-13 Score=130.12 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=66.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC--cc-----------------------c------ccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD--VD-----------------------V------QPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~--~~-----------------------~------~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|.+|+|||||+++|+... +. + ....+.|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 34689999999999999999996421 10 0 01234566666666777788
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC---CCCHHHHH-HHHHHHhhccCCCc-EEEEEec
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC---GYSIAQQA-ALFHSIKSLFMNKP-LIIVCNK 290 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~---~~~~~~~~-~~l~~l~~~~~~~p-iivV~NK 290 (293)
.+.||||||+.+.. .........+|++++|+|+++.. +|+...|. +.+..+.. .+.| +++|+||
T Consensus 122 ~~~iiDtPGh~~f~---------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK 190 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV---------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINK 190 (467)
T ss_dssp EEEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEEC
T ss_pred EEEEEECCCcHHHH---------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEEC
Confidence 89999999984321 11122345579999999999852 22211111 22222222 3677 9999999
Q ss_pred cCC
Q 040152 291 TDL 293 (293)
Q Consensus 291 ~Dl 293 (293)
+|+
T Consensus 191 ~Dl 193 (467)
T 1r5b_A 191 MDE 193 (467)
T ss_dssp TTS
T ss_pred ccC
Confidence 996
No 179
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.41 E-value=6.7e-13 Score=128.33 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=66.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc---------------ccCccceeeeeEEEEEec-----CceEEEEeCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV---------------QPYAFTTKSLFVGHTDYK-----YLRYQVIDTPGIL 226 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~---------------~~~~~tt~~~~~~~~~~~-----~~~~~iiDTpG~~ 226 (293)
+.++|+++|.+|+|||||+++|+...... ....+.|.......+.|. +..++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999997532111 011234444444455554 2468999999984
Q ss_pred CCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 227 DRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 227 ~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+.. . ..... ...+|++++|+|+++........ .|..... .+.|+++|+||+|+
T Consensus 83 dF~-----~---ev~~~-l~~aD~aILVVDa~~gv~~qt~~--~~~~~~~---~~ipiIvViNKiDl 135 (599)
T 3cb4_D 83 DFS-----Y---EVSRS-LAACEGALLVVDAGQGVEAQTLA--NCYTAME---MDLEVVPVLNKIDL 135 (599)
T ss_dssp GGH-----H---HHHHH-HHHCSEEEEEEETTTCCCTHHHH--HHHHHHH---TTCEEEEEEECTTS
T ss_pred HHH-----H---HHHHH-HHHCCEEEEEEECCCCCCHHHHH--HHHHHHH---CCCCEEEeeeccCc
Confidence 321 1 11122 23369999999999876654444 2333222 47899999999996
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=119.37 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCc-------cceeeeeE--EEEEecCc--eEEEEeCCCCCCCCCC----
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYA-------FTTKSLFV--GHTDYKYL--RYQVIDTPGILDRPFE---- 231 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~-------~tt~~~~~--~~~~~~~~--~~~iiDTpG~~~~~~~---- 231 (293)
..++|+++|.+|+|||||+|+|++.......+. ..|..... ..+...+. .+.+|||||+.+....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 356899999999999999999887654322221 12322222 22233333 5899999999654211
Q ss_pred --chhHHHHHHHHHhhc------------cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 232 --DRNIIEMCSITALAH------------LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 232 --~~~~~e~~~~~~l~~------------~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....++.+.-..+.. ..++++|+++.+. .++...+. .+++.+. .+.|+|+|+||+|+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-~~l~~~d~-~~~~~l~---~~~piIlV~NK~Dl 186 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV-AFMKAIH---NKVNIVPVIAKADT 186 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-SSCCHHHH-HHHHHTC---S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-CCcchhHH-HHHHHhc---cCCCEEEEEECCCC
Confidence 111111111111111 1246778877643 35555442 5566553 47899999999996
No 181
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.40 E-value=1.3e-13 Score=129.88 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=74.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC--ccc-----------------------------ccCccceeeeeEEEEEecCce
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD--VDV-----------------------------QPYAFTTKSLFVGHTDYKYLR 216 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~--~~~-----------------------------~~~~~tt~~~~~~~~~~~~~~ 216 (293)
..+|+++|.+|+|||||+|+|++.. +.. ....+.|.+.....+..++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4689999999999999999998641 100 002456766666677777888
Q ss_pred EEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC---CCCHH-HHHHHHHHHhhccCCCc-EEEEEecc
Q 040152 217 YQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC---GYSIA-QQAALFHSIKSLFMNKP-LIIVCNKT 291 (293)
Q Consensus 217 ~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~---~~~~~-~~~~~l~~l~~~~~~~p-iivV~NK~ 291 (293)
+.||||||+.+ +. .........+|++++|+|+++.. +++.. +..+.+..+.. .+.| +++|+||+
T Consensus 87 ~~iiDtPGh~~--------f~-~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~ 155 (458)
T 1f60_A 87 VTVIDAPGHRD--------FI-KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKM 155 (458)
T ss_dssp EEEEECCCCTT--------HH-HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECG
T ss_pred EEEEECCCcHH--------HH-HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEcc
Confidence 99999999732 11 11223345679999999998731 22100 11122222222 3555 99999999
Q ss_pred CC
Q 040152 292 DL 293 (293)
Q Consensus 292 Dl 293 (293)
|+
T Consensus 156 Dl 157 (458)
T 1f60_A 156 DS 157 (458)
T ss_dssp GG
T ss_pred cc
Confidence 96
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.40 E-value=1.5e-12 Score=128.41 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=75.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc--c----------ccc------CccceeeeeEEEEEecC-------ceEEEEe
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV--D----------VQP------YAFTTKSLFVGHTDYKY-------LRYQVID 221 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~--~----------~~~------~~~tt~~~~~~~~~~~~-------~~~~iiD 221 (293)
..++|+++|..|+|||||+++|+.... . ..+ ..+.|.......+.+++ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 457999999999999999999964311 0 111 12345555555666666 7899999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 222 TPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 222 TpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|||+.+... ..... ...+|++|+|+|+++........ ++..+.. .+.|+++|+||+|+
T Consensus 89 TPG~~df~~--------~~~~~-l~~aD~aIlVvDa~~gv~~qt~~---~~~~~~~--~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 89 TPGHVDFTI--------EVERS-MRVLDGAVMVYCAVGGVQPQSET---VWRQANK--YKVPRIAFVNKMDR 146 (704)
T ss_pred CCCccchHH--------HHHHH-HHHCCEEEEEEeCCCCCcHHHHH---HHHHHHH--cCCCEEEEEeCCCc
Confidence 999854321 11122 23469999999999864333332 3333333 47899999999996
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.40 E-value=5.6e-14 Score=136.11 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=55.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-------------------------------ccccCccceeeeeEEEEEecCc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-------------------------------DVQPYAFTTKSLFVGHTDYKYL 215 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-------------------------------~~~~~~~tt~~~~~~~~~~~~~ 215 (293)
...+|+++|.+|+|||||+|+|++... .....+++|.+.....+.+++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 346899999999999999999964210 0111456788887778888888
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC---CC----CHHHHHHHHHHHhhccCCCc-EEEE
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC---GY----SIAQQAALFHSIKSLFMNKP-LIIV 287 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~---~~----~~~~~~~~l~~l~~~~~~~p-iivV 287 (293)
.+.||||||+.+..... ......+|++|+|+|+++.. ++ .... .+..+.. .+.| +|+|
T Consensus 256 ~i~iiDTPGh~~f~~~~---------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e---~l~~~~~--lgip~iIvv 321 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGM---------IAGASSADFAVLVVDSSQNNFERGFLENGQTRE---HAYLLRA--LGISEIVVS 321 (592)
T ss_dssp ---CCEEESSSEEEEEC---------CC-------CCSEEEEEECCSSTTSCSCSSHHH---HHHHHHH--SSCCCEEEE
T ss_pred EEEEEECCChHHHHHHH---------HHHHhhCCEEEEEEECCCCccccccccchHHHH---HHHHHHH--cCCCeEEEE
Confidence 89999999985432111 11123469999999999753 22 2222 2222222 3565 9999
Q ss_pred EeccCC
Q 040152 288 CNKTDL 293 (293)
Q Consensus 288 ~NK~Dl 293 (293)
+||+|+
T Consensus 322 iNKiDl 327 (592)
T 3mca_A 322 VNKLDL 327 (592)
T ss_dssp EECGGG
T ss_pred Eecccc
Confidence 999996
No 184
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.39 E-value=4.4e-13 Score=121.89 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=60.9
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcC------CcccccC-c-------------------------cceeeeeEEE----
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRA------DVDVQPY-A-------------------------FTTKSLFVGH---- 209 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~------~~~~~~~-~-------------------------~tt~~~~~~~---- 209 (293)
...+.|+++|+||||||||+|+|++. ++.+... | +.+.....++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 45678999999999999999999862 2211111 1 1111110000
Q ss_pred ----------EEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc
Q 040152 210 ----------TDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF 279 (293)
Q Consensus 210 ----------~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~ 279 (293)
+...+.++.++||||+.+. + ..+...+|++++|+|++.+... ..+ ...+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~---------~~l~~~~d~vl~V~d~~~~~~~---~~i--~~~i---- 210 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E---------FAVADMVDMFVLLLPPAGGDEL---QGI--KRGI---- 210 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---H---------HHHHTTCSEEEEEECCC---------------------
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---h---------hhHHhhCCEEEEEEcCCcchhH---HHh--HHHH----
Confidence 1235668999999998421 1 1224457999999999874211 111 1111
Q ss_pred CCCcEEEEEeccCC
Q 040152 280 MNKPLIIVCNKTDL 293 (293)
Q Consensus 280 ~~~piivV~NK~Dl 293 (293)
...|.++|+||+|+
T Consensus 211 l~~~~ivVlNK~Dl 224 (349)
T 2www_A 211 IEMADLVAVTKSDG 224 (349)
T ss_dssp CCSCSEEEECCCSG
T ss_pred HhcCCEEEEeeecC
Confidence 24688999999995
No 185
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.39 E-value=8e-13 Score=127.63 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=67.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCccc---------------ccCccceeeeeEEEEEec---C--ceEEEEeCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDV---------------QPYAFTTKSLFVGHTDYK---Y--LRYQVIDTPGILD 227 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~---------------~~~~~tt~~~~~~~~~~~---~--~~~~iiDTpG~~~ 227 (293)
.++|+++|.+|+|||||+++|+...... ....+.|.......+.|. + ..++||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4689999999999999999997521100 011233443333344443 2 4688999999954
Q ss_pred CCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.. . ..... ...+|++++|+|+++........ .|.... . .+.|+++|+||+|+
T Consensus 86 F~-----~---ev~r~-l~~aD~aILVVDa~~gv~~qt~~--~~~~a~-~--~~ipiIvviNKiDl 137 (600)
T 2ywe_A 86 FS-----Y---EVSRA-LAACEGALLLIDASQGIEAQTVA--NFWKAV-E--QDLVIIPVINKIDL 137 (600)
T ss_dssp GH-----H---HHHHH-HHTCSEEEEEEETTTBCCHHHHH--HHHHHH-H--TTCEEEEEEECTTS
T ss_pred HH-----H---HHHHH-HHhCCEEEEEEECCCCccHHHHH--HHHHHH-H--CCCCEEEEEeccCc
Confidence 21 1 11122 34469999999999865443333 233222 2 47899999999996
No 186
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.36 E-value=9.3e-13 Score=132.35 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=72.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCccc----------------ccCccceeeeeEEEEEec----------------C
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDV----------------QPYAFTTKSLFVGHTDYK----------------Y 214 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~----------------~~~~~tt~~~~~~~~~~~----------------~ 214 (293)
..++|+++|.+|+|||||+++|+...... ....+.|.......+.+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 34689999999999999999998542110 011233443333444443 4
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..++||||||+.+...+ ... ....+|++|+|+|+++..++.... ++..+.. .+.|+++|+||+|+
T Consensus 98 ~~i~liDTPG~~df~~~--------~~~-~l~~aD~ailVvDa~~g~~~qt~~---~~~~~~~--~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSE--------VTA-ALRVTDGALVVVDTIEGVCVQTET---VLRQALG--ERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSCHH--------HHH-HHHTCSEEEEEEETTTBSCHHHHH---HHHHHHH--TTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhHHH--------HHH-HHHhCCEEEEEEeCCCCCCHHHHH---HHHHHHH--cCCCeEEEEECCCc
Confidence 57899999999764311 112 234469999999999865544333 2223222 47899999999994
No 187
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.35 E-value=3.5e-12 Score=129.57 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=72.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc----------c------cccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV----------D------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~----------~------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
...+|+++|.+|+|||||+++|++... . .....+.|.+.....+..++..+.||||||+.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe---- 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA---- 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH----
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH----
Confidence 457899999999999999999986310 0 01123445444444455566789999999972
Q ss_pred CchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccCC
Q 040152 231 EDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTDL 293 (293)
Q Consensus 231 ~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~Dl 293 (293)
. +. .........+|++++|+|+++.......+ ++..+.. .+.| +|+|+||+|+
T Consensus 371 --d--F~-~~mi~gas~AD~aILVVDAtdGv~~QTrE---hL~ll~~--lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 371 --D--YV-KNMITGAAQMDGAILVVAATDGPMPQTRE---HILLGRQ--VGVPYIIVFLNKCDM 424 (1289)
T ss_dssp --H--HH-HHHHHTSCCCSEEEEEEETTTCSCTTHHH---HHHHHHH--HTCSCEEEEEECCTT
T ss_pred --H--HH-HHHHHHHhhCCEEEEEEcCCccCcHHHHH---HHHHHHH--cCCCeEEEEEeeccc
Confidence 1 11 12233445679999999999865544443 3333333 2678 8999999996
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.34 E-value=1.5e-12 Score=118.67 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=64.0
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcC------Cccc-ccCcccee-------------------eeeE------------
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRA------DVDV-QPYAFTTK-------------------SLFV------------ 207 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~------~~~~-~~~~~tt~-------------------~~~~------------ 207 (293)
...+.|+++|.+|||||||+++|+.. ++.+ ...+.++. ....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 45679999999999999999998632 2221 11111111 0000
Q ss_pred --------EEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhcc
Q 040152 208 --------GHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLF 279 (293)
Q Consensus 208 --------~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~ 279 (293)
..+...+..+.||||||+.. ....+...+|++++|+|++...... .+....
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~------------~~~~~~~~aD~vl~V~d~~~~~~~~---------~l~~~~ 215 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ------------SEVAVANMVDTFVLLTLARTGDQLQ---------GIKKGV 215 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS------------HHHHHHTTCSEEEEEEESSTTCTTT---------TCCTTS
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc------------HHHHHHHhCCEEEEEECCCCCccHH---------HHHHhH
Confidence 00123457899999999732 1112335679999999987643321 111111
Q ss_pred CCCcEEEEEeccCC
Q 040152 280 MNKPLIIVCNKTDL 293 (293)
Q Consensus 280 ~~~piivV~NK~Dl 293 (293)
...|+++|+||+|+
T Consensus 216 ~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 216 LELADIVVVNKADG 229 (355)
T ss_dssp GGGCSEEEEECCCG
T ss_pred hhcCCEEEEECCCC
Confidence 24699999999995
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.34 E-value=2.2e-12 Score=123.82 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=76.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCc----------------c------cccCccceeeeeEEEEEecCceEEEEeCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADV----------------D------VQPYAFTTKSLFVGHTDYKYLRYQVIDTPGI 225 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~----------------~------~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~ 225 (293)
.++|+|+|..++|||||..+|+...- . .....+.|.......+.|++..++|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 35899999999999999999851100 0 1122355666777788999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 226 LDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.|+..+- .+++. .+|++|+|+|+.+. ...... .+++.+.. .+.|.++++||+|.
T Consensus 111 vDF~~Ev--------~raL~-~~DgAvlVvda~~G--V~~qT~-~v~~~a~~--~~lp~i~fINK~Dr 164 (548)
T 3vqt_A 111 QDFSEDT--------YRVLT-AVDSALVVIDAAKG--VEAQTR-KLMDVCRM--RATPVMTFVNKMDR 164 (548)
T ss_dssp GGCSHHH--------HHHHH-SCSEEEEEEETTTB--SCHHHH-HHHHHHHH--TTCCEEEEEECTTS
T ss_pred HHHHHHH--------HHHHH-hcCceEEEeecCCC--cccccH-HHHHHHHH--hCCceEEEEecccc
Confidence 8875322 12332 35999999999984 333322 33444444 58999999999994
No 190
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=120.66 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=51.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEecCc-----------------eEEEEeCCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYL-----------------RYQVIDTPGILDRP 229 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~iiDTpG~~~~~ 229 (293)
...+|+++|.||||||||+|+|++..+.++++||+|.++..+.+.+++. .+++|||||+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3468999999999999999999999888899999999999998877652 38999999996532
Q ss_pred CCchhHHHHHHHHHhhccCcEEEEEEeCCCCCC
Q 040152 230 FEDRNIIEMCSITALAHLRSAVLFFLDISGSCG 262 (293)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~ 262 (293)
... ..+....+. ....+|++++|+|+++..+
T Consensus 101 s~~-~glg~~~l~-~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNG-QGLGNAFLS-HISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHH-HHHTSSSEEEEEEC-----
T ss_pred chh-hHHHHHHHH-HHHhcCeEEEEEecCCCcc
Confidence 211 011111222 2345799999999987543
No 191
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.27 E-value=6.8e-12 Score=114.56 Aligned_cols=89 Identities=24% Similarity=0.304 Sum_probs=66.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEec---------------------CceEEEEeCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYK---------------------YLRYQVIDTPGILD 227 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~~---------------------~~~~~iiDTpG~~~ 227 (293)
.+|+++|.||||||||+|+|++....++++||+|..++.+...+. +..+++|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 479999999999999999999887667889999998888877553 24689999999976
Q ss_pred CCCCchhHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 228 RPFEDRNIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 228 ~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
...... .+..+.+.. ...+|++++|+|+++
T Consensus 82 ~a~~~~-~lg~~fl~~-ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGE-GLGNQFLAH-IREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSS-CTTHHHHHH-HHTCSEEEEEEECCC
T ss_pred cccccc-hHHHHHHHH-HHhCCEEEEEEECCC
Confidence 432211 011122222 344699999999986
No 192
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.25 E-value=2.9e-11 Score=118.66 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=75.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCcc------c------cc------CccceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADVD------V------QP------YAFTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~~------~------~~------~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
...+|+++|.+|+|||||+++|++.... + .+ ..+.|.......+.+.+..+++|||||+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3568999999999999999999843221 0 11 1133444555566677788999999998432
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
. ... ......+|++++|+|+++.. .... ..++..+.. .+.|+++|+||+|+
T Consensus 88 -----~---~~~-~~~l~~ad~~ilVvD~~~g~--~~qt-~~~~~~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 88 -----V---GEI-RGALEAADAALVAVSAEAGV--QVGT-ERAWTVAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp -----H---HHH-HHHHHHCSEEEEEEETTTCS--CHHH-HHHHHHHHH--TTCCEEEEEECGGG
T ss_pred -----H---HHH-HHHHhhcCcEEEEEcCCccc--chhH-HHHHHHHHH--ccCCEEEEecCCch
Confidence 1 111 22233469999999988743 3322 244555544 47899999999995
No 193
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.21 E-value=8.9e-13 Score=120.72 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=75.0
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC------CcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 169 RTILICGYPNVGKSSFMNKITRA------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~------~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
.+|+++|.+|+|||||+|+|++. ...++++|+||.+...... + ..+.++||||+.+..... ..+....+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~-~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMA-HFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGG-GGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHH-HHHhHHHHH
Confidence 47999999999999999999986 4557889999988765433 2 348999999998653111 111111222
Q ss_pred Hhh--ccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALA--HLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~--~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+. ...+.++|++|+.......... .+..+.. .+.|+++|+||+|.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~---~l~~l~~--~~~~~~~v~~k~d~ 286 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLA---RLDYIKG--GRRSFVCYMANELT 286 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE---EEEEEES--SSEEEEEEECTTSC
T ss_pred HHhcccccCceEEEEcCCceEEECCEE---EEEEccC--CCceEEEEecCCcc
Confidence 221 3358999999995421111111 1222222 46799999999994
No 194
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=2.5e-11 Score=111.53 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecC-----------------ceEEEEeCCCCCCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKY-----------------LRYQVIDTPGILDR 228 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~-----------------~~~~iiDTpG~~~~ 228 (293)
...+++++|.||||||||+|+|++... .++++||||..+..+.+.+++ ..+.+|||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 356899999999999999999999888 689999999999999988876 35799999998754
Q ss_pred CCCchhHHHHHHHHHhhccCcEEEEEEeCCC
Q 040152 229 PFEDRNIIEMCSITALAHLRSAVLFFLDISG 259 (293)
Q Consensus 229 ~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~ 259 (293)
.... ..+....+..+ ..+|++++|+|+++
T Consensus 99 ~s~~-e~L~~~fl~~i-r~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTG-VGLGNAFLSHV-RAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSS-SSSCHHHHHHH-TTCSEEEEEEECCC
T ss_pred CcHH-HHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 3221 11111222333 34699999999976
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.20 E-value=1.1e-12 Score=120.15 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=70.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC-------CcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHH
Q 040152 169 RTILICGYPNVGKSSFMNKITRA-------DVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI 241 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~-------~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~ 241 (293)
.+|+++|.+|+|||||+|+|++. ...+++.|+||.+.....+. ..+.++||||+.+..... ..+....+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~-~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQMA-HYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS---SSCEEEECCCBCCTTSGG-GGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHHH-HHhhHHHH
Confidence 47999999999999999999875 23367888999877654432 238999999998754111 11111222
Q ss_pred HHh--hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 242 TAL--AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 242 ~~l--~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+ ....+.++|++|+......... ..+..+.. .+.|+++|+||+|.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l---~~~d~l~~--~~~~~~~v~nk~d~ 285 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGL---ARFDYVSG--GRRAFTCHFSNRLT 285 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT---EEEEEEES--SSEEEEEEECTTSC
T ss_pred HHhccccccCceEEEEcCCCEEEEcce---EEEEEecC--CCceEEEEecCccc
Confidence 222 2234789999998532111111 11222222 46799999999994
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.19 E-value=1e-11 Score=112.57 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=60.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc------CCcc-cccCccceee-------------------eeE----------E--
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR------ADVD-VQPYAFTTKS-------------------LFV----------G-- 208 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~------~~~~-~~~~~~tt~~-------------------~~~----------~-- 208 (293)
....|+++|++|+|||||+|.|++ .++. +...+++|.. ... +
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 567899999999999999999963 2222 1122222210 000 0
Q ss_pred --------EEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC
Q 040152 209 --------HTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM 280 (293)
Q Consensus 209 --------~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~ 280 (293)
...+++.++.||||||+.+. .. .+...+|++++|+|++........ . ... .
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~----~~--------~~~~~aD~vl~Vvd~~~~~~~~~l---~--~~~----~ 193 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQS----ET--------EVARMVDCFISLQIAGGGDDLQGI---K--KGL----M 193 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTH----HH--------HHHTTCSEEEEEECC------CCC---C--HHH----H
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccch----HH--------HHHHhCCEEEEEEeCCccHHHHHH---H--Hhh----h
Confidence 01144678999999998431 10 123567999999999764221100 0 010 1
Q ss_pred CCcEEEEEeccCC
Q 040152 281 NKPLIIVCNKTDL 293 (293)
Q Consensus 281 ~~piivV~NK~Dl 293 (293)
+.|.++|+||+|+
T Consensus 194 ~~p~ivv~NK~Dl 206 (341)
T 2p67_A 194 EVADLIVINKDDG 206 (341)
T ss_dssp HHCSEEEECCCCT
T ss_pred cccCEEEEECCCC
Confidence 4588999999996
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.18 E-value=1.3e-11 Score=120.65 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=77.5
Q ss_pred CceEeecCCCCCCHhHHHHHHh---cCC-----cc----cccC------ccceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 168 TRTILICGYPNVGKSSFMNKIT---RAD-----VD----VQPY------AFTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~---~~~-----~~----~~~~------~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
.++|+|+|..++|||||..+|. |.- +. ..++ .+.|.......+.|++..++|+||||+.|+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 3589999999999999999985 211 10 1111 1456666667788899999999999998764
Q ss_pred CCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 230 FEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 230 ~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+ ..+++ ..+|++|+|+|+.+........ .++.+.. .+.|.++++||+|.
T Consensus 82 ~E--------v~raL-~~~DgavlVVDa~~GV~~qT~~---v~~~a~~--~~lp~i~~INKmDr 131 (638)
T 3j25_A 82 AE--------VYRSL-SVLDGAILLISAKDGVQAQTRI---LFHALRK--MGIPTIFFINKIDQ 131 (638)
T ss_dssp HH--------HHHHH-TTCSEEECCEESSCTTCSHHHH---HHHHHHH--HTCSCEECCEECCS
T ss_pred HH--------HHHHH-HHhCEEEEEEeCCCCCcHHHHH---HHHHHHH--cCCCeEEEEecccc
Confidence 22 11233 3359999999999854433333 3333333 37899999999994
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.6e-10 Score=107.10 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCCCCceEeecCCCCCCHhHHHHHHhcCCcccccC-------ccceeeeeEEE-EEecC--ceEEEEeCCCCCCCCCCc-
Q 040152 164 IDPNTRTILICGYPNVGKSSFMNKITRADVDVQPY-------AFTTKSLFVGH-TDYKY--LRYQVIDTPGILDRPFED- 232 (293)
Q Consensus 164 ~~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~-------~~tt~~~~~~~-~~~~~--~~~~iiDTpG~~~~~~~~- 232 (293)
.+.-.++|+++|++|||||||+|.|++..+..... ..++.....+. ....+ ..+.+|||||+.......
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 33456789999999999999999999876532211 11111011111 11122 257999999996532100
Q ss_pred -hhHHH-H--HHHH-----------HhhccC--cEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 -RNIIE-M--CSIT-----------ALAHLR--SAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 -~~~~e-~--~~~~-----------~l~~~~--d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+. . ..+. ++...+ +++||+.+++. .++...+ ..|+..+.. +.|+|+|+||+|+
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d-~~~lk~L~~---~v~iIlVinK~Dl 179 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLD-IEFMKRLHE---KVNIIPLIAKADT 179 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHH-HHHHHHHTT---TSEEEEEEESTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHH-HHHHHHHhc---cCcEEEEEEcccC
Confidence 00110 0 0011 112223 34565555542 3566554 367777754 7899999999996
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.12 E-value=3e-10 Score=112.31 Aligned_cols=113 Identities=23% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC--------Ccc----cc------cCccceeeeeEEEEEec-------CceEEEEe
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA--------DVD----VQ------PYAFTTKSLFVGHTDYK-------YLRYQVID 221 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~--------~~~----~~------~~~~tt~~~~~~~~~~~-------~~~~~iiD 221 (293)
+.++|+|+|+.++|||||..+|... .+. .. ...+.|.....-.+.|. +..++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4569999999999999999998521 110 11 12234544444555554 45799999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 222 TPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 222 TpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
|||+.|+..+- + .+++ .+|++|+|+|+.+. ...... .+++.... .+.|.++|+||+|.
T Consensus 92 TPGHvDF~~Ev----~-~aLr----~~DgavlvVDaveG--V~~qT~-~v~~~a~~--~~lp~i~~iNKiDr 149 (709)
T 4fn5_A 92 TPGHVDFTIEV----E-RSLR----VLDGAVVVFCGTSG--VEPQSE-TVWRQANK--YGVPRIVYVNKMDR 149 (709)
T ss_dssp CCSCTTCHHHH----H-HHHH----HCSEEEEEEETTTC--SCHHHH-HHHHHHHH--HTCCEEEEEECSSS
T ss_pred CCCCcccHHHH----H-HHHH----HhCeEEEEEECCCC--CchhHH-HHHHHHHH--cCCCeEEEEccccc
Confidence 99998874221 1 2222 25999999999984 333322 34444443 38999999999994
No 200
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.05 E-value=1.7e-10 Score=111.05 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=60.0
Q ss_pred CCCCceEeecCCCCCCHhHHHHHHhcCCcccccCccceeeeeEEEEEe-------cCceEEEEeCCCCCCCCC-CchhHH
Q 040152 165 DPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDY-------KYLRYQVIDTPGILDRPF-EDRNII 236 (293)
Q Consensus 165 ~~~~~~I~vvG~~~~GKSSlin~l~~~~~~~~~~~~tt~~~~~~~~~~-------~~~~~~iiDTpG~~~~~~-~~~~~~ 236 (293)
+.....|+|+|.||||||||+|+|+|..... +.+++|.+.+.+.+.| .+..+.++||||+.+... ......
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 3456789999999999999999999987543 5556665555555443 456799999999987543 222223
Q ss_pred HHHHHHHhhccCcEEEEEEeCCCC
Q 040152 237 EMCSITALAHLRSAVLFFLDISGS 260 (293)
Q Consensus 237 e~~~~~~l~~~~d~il~v~D~s~~ 260 (293)
+..++..+. ++ ++|+|++..
T Consensus 114 ~~fala~ll--ss--~lv~n~~~~ 133 (592)
T 1f5n_A 114 WIFALAVLL--SS--TFVYNSIGT 133 (592)
T ss_dssp HHHHHHHHH--CS--EEEEEEESC
T ss_pred HHHHHHHHh--cC--eEEEECCCC
Confidence 333333332 23 466776653
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=9.6e-10 Score=97.77 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=58.9
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcC-CcccccCc------cceeeeeE-E-EEEec--CceEEEEeCCCCCCCCC----
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRA-DVDVQPYA------FTTKSLFV-G-HTDYK--YLRYQVIDTPGILDRPF---- 230 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~-~~~~~~~~------~tt~~~~~-~-~~~~~--~~~~~iiDTpG~~~~~~---- 230 (293)
.-.++|+++|++|||||||+++|++. .+..+..+ ..|..... + ..+.. ...+++|||||+.+...
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34578999999999999999999876 33222111 01111111 1 11112 23689999999954210
Q ss_pred --CchhHHHH---HHHHHhhcc---------CcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 231 --EDRNIIEM---CSITALAHL---------RSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 231 --~~~~~~e~---~~~~~l~~~---------~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.....+.. ..+..+... +++++|+.+++.. +++..+ .++++.+. ...|+++|+||+|+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~-~~~l~~l~---~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD-VAFMKAIH---NKVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH-HHHHHHHT---TTSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH-HHHHHHHH---hcCCEEEEEEeCCC
Confidence 00111111 111222110 1346666665542 466654 35555553 36799999999995
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.03 E-value=8.8e-11 Score=99.09 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC-----cc-cccCccceee--------eeEEEE------------------EecC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD-----VD-VQPYAFTTKS--------LFVGHT------------------DYKY 214 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~-----~~-~~~~~~tt~~--------~~~~~~------------------~~~~ 214 (293)
..+.|+++|.+|||||||+++|++.. .. +...++++.+ .....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998641 11 1112221110 000000 1234
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+.+|||+|+...+.. +...++.+++|+|++... . ..+.+... .+.|.++|+||+|+
T Consensus 109 ~d~iiidt~G~~~~~~~------------~~~~~~~~i~vvd~~~~~--~--~~~~~~~~-----~~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD------------FDLGENYRVVMVSVTEGD--D--VVEKHPEI-----FRVADLIVINKVAL 166 (221)
T ss_dssp CSEEEEEEEEBSSGGGG------------CCCSCSEEEEEEEGGGCT--T--HHHHCHHH-----HHTCSEEEEECGGG
T ss_pred CCEEEEeCCCCCCCCch------------hccccCcEEEEEeCCCcc--h--hhhhhhhh-----hhcCCEEEEecccC
Confidence 56899999996322110 111347899999998742 1 12222222 14789999999995
No 203
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.02 E-value=5.5e-10 Score=98.45 Aligned_cols=63 Identities=33% Similarity=0.467 Sum_probs=40.6
Q ss_pred CCCceEeecCCCCCCHhHHHHHHhcCC-cccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCC
Q 040152 166 PNTRTILICGYPNVGKSSFMNKITRAD-VDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFE 231 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~ 231 (293)
....+++++|.||||||||+|+|.+.. ..+++.|++|++... +.. +..+.++||||+......
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWPKFE 181 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCSCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCCCCC
Confidence 356789999999999999999999987 457888999987753 223 457999999999876443
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=2.6e-10 Score=103.09 Aligned_cols=106 Identities=24% Similarity=0.272 Sum_probs=60.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc------CCcccc-cCccceee-------------------eeEE------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR------ADVDVQ-PYAFTTKS-------------------LFVG------------ 208 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~------~~~~~~-~~~~tt~~-------------------~~~~------------ 208 (293)
....++++|++|||||||+|.+++ .++.+. ..+.++.. ....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 456899999999999999999973 333211 11111110 0000
Q ss_pred --------EEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccC
Q 040152 209 --------HTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFM 280 (293)
Q Consensus 209 --------~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~ 280 (293)
.+...+.++.|+||||+.+. + ..+...+|++++|+|++.... .+ .+.....
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~---~---------~~v~~~~d~vl~v~d~~~~~~---~~------~i~~~i~ 192 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQS---E---------TAVADLTDFFLVLMLPGAGDE---LQ------GIKKGIF 192 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSC---H---------HHHHTTSSEEEEEECSCC---------------CCTTHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcc---h---------hhHHhhCCEEEEEEcCCCccc---HH------HHHHHHh
Confidence 01235678999999998532 1 112355799999999864321 00 1110001
Q ss_pred CCcEEEEEeccCC
Q 040152 281 NKPLIIVCNKTDL 293 (293)
Q Consensus 281 ~~piivV~NK~Dl 293 (293)
..|.++|+||+|+
T Consensus 193 ~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 193 ELADMIAVNKADD 205 (337)
T ss_dssp HHCSEEEEECCST
T ss_pred ccccEEEEEchhc
Confidence 2356788899994
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.99 E-value=1.5e-09 Score=97.73 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=55.8
Q ss_pred eeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCC-------CCCCC-HHHHHHHHH
Q 040152 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISG-------SCGYS-IAQQAALFH 273 (293)
Q Consensus 202 t~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~-------~~~~~-~~~~~~~l~ 273 (293)
|.+.....+.+++..+++|||+|+ ++ +......+...+++++||+|+|+ ..+.+ ..+...|+.
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQ------e~---~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~ 218 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQ------RS---ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFK 218 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSC------HH---HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCc------cc---ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHH
Confidence 445555566677788999999998 22 11223456677899999999982 11222 223346677
Q ss_pred HHhhc--cCCCcEEEEEeccCC
Q 040152 274 SIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 274 ~l~~~--~~~~piivV~NK~Dl 293 (293)
.+... +.+.|+++|+||+||
T Consensus 219 ~i~~~~~~~~~piiLv~NK~DL 240 (340)
T 4fid_A 219 DIMTNEFLKGAVKLIFLNKMDL 240 (340)
T ss_dssp HHHHCGGGTTSEEEEEEECHHH
T ss_pred HHhhhhccCCCeEEEEEECchh
Confidence 66543 468999999999995
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.91 E-value=1.6e-09 Score=93.74 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHh-----cCCcc
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT-----RADVD 194 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~-----~~~~~ 194 (293)
....++++|.+||||||+++.|. +.++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45678999999999999999998 65554
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=7.1e-09 Score=90.70 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=66.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcccc--------cCccceeeeeEEEEEe-cC--ceEEEEeCCCCCCCCCCc-----
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVDVQ--------PYAFTTKSLFVGHTDY-KY--LRYQVIDTPGILDRPFED----- 232 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~~~--------~~~~tt~~~~~~~~~~-~~--~~~~iiDTpG~~~~~~~~----- 232 (293)
++++++|++|+|||||+|.|+|.....+ +.+.++.....+...- .+ ..+.++|+||+.......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 5899999999999999999987533211 1111111111221111 11 257999999997643211
Q ss_pred -hhHHHHHHH----HHhhc---------cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 233 -RNIIEMCSI----TALAH---------LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 233 -~~~~e~~~~----~~l~~---------~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...++.... ..+.. .+.++++++|.... +....+ ..+++.+.. ..++|+|+||+|.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLD-LEFMKHLSK---VVNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHH-HHHHHHHHT---TSEEEEEETTGGG
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHH-HHHHHHHHh---cCcEEEEEecccc
Confidence 111111111 11110 13678999997642 445444 466777765 3899999999994
No 208
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.89 E-value=2.5e-08 Score=92.82 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=64.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC------Ccc-cccC------------------------ccceeeee----EEEEEe
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA------DVD-VQPY------------------------AFTTKSLF----VGHTDY 212 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~------~~~-~~~~------------------------~~tt~~~~----~~~~~~ 212 (293)
...|+++|.+||||||+++.|... ++. +..- .+++.++. .....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998752 222 1100 00222210 000012
Q ss_pred cCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhc--cCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCC-c-EEEEE
Q 040152 213 KYLRYQVIDTPGILDRPFEDRNIIEMCSITALAH--LRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNK-P-LIIVC 288 (293)
Q Consensus 213 ~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~--~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~-p-iivV~ 288 (293)
.+.++.|+||||.... +...+ ..+..+.. .+|.+++|+|++.. .+.. .....+.. .. | ..+|+
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~--~~l~~i~~~~~~d~vllVvda~~g--~~~~---~~~~~~~~---~~~~i~gvVl 245 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLL--EEMKQIKEITNPDEIILVIDGTIG--QQAG---IQAKAFKE---AVGEIGSIIV 245 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHH--HHHHHTTSSSCCSEEEEEEEGGGG--GGHH---HHHHHHHT---TSCSCEEEEE
T ss_pred hCCCEEEEcCCCCccc---cHHHH--HHHHHHHHHhcCcceeEEeecccc--HHHH---HHHHHHhh---cccCCeEEEE
Confidence 4567999999998532 11111 11222222 36899999999763 2222 23333332 34 5 88999
Q ss_pred eccCC
Q 040152 289 NKTDL 293 (293)
Q Consensus 289 NK~Dl 293 (293)
||+|.
T Consensus 246 nK~D~ 250 (432)
T 2v3c_C 246 TKLDG 250 (432)
T ss_dssp ECSSS
T ss_pred eCCCC
Confidence 99994
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.88 E-value=6.2e-09 Score=98.54 Aligned_cols=116 Identities=12% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHh------cCCccc-ccCccc--e------------eeeeEE---------------EE
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT------RADVDV-QPYAFT--T------------KSLFVG---------------HT 210 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~------~~~~~~-~~~~~t--t------------~~~~~~---------------~~ 210 (293)
....|+++|.+||||||++++|+ |.++.. +.-++. + ..+... ..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 655431 110000 0 000000 01
Q ss_pred EecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcE-EEEEe
Q 040152 211 DYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPL-IIVCN 289 (293)
Q Consensus 211 ~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~pi-ivV~N 289 (293)
.+.+.++.||||||...........+. .+... ..+|.+++|+|++.. .+... ....+.+ ..|+ ++|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~--~~~~~-i~pd~vllVvDa~~g--~~~~~---~a~~~~~---~~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEML--QVANA-IQPDNIVYVMDASIG--QACEA---QAKAFKD---KVDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHH--HHHHH-HCCSEEEEEEETTCC--TTHHH---HHHHHHH---HHCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHH--HHHhh-hcCceEEEEEecccc--ccHHH---HHHHHHh---hcCceEEEEe
Confidence 125568999999998643211111111 11111 247999999999874 33333 3333332 2565 89999
Q ss_pred ccCC
Q 040152 290 KTDL 293 (293)
Q Consensus 290 K~Dl 293 (293)
|+|.
T Consensus 249 K~D~ 252 (504)
T 2j37_W 249 KLDG 252 (504)
T ss_dssp CTTS
T ss_pred CCcc
Confidence 9994
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.83 E-value=1.7e-08 Score=93.40 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=64.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCccc---cc-CccceeeeeEEEEEecC--ceEEEEeCCCCCCCCCCc------hhH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDV---QP-YAFTTKSLFVGHTDYKY--LRYQVIDTPGILDRPFED------RNI 235 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~---~~-~~~tt~~~~~~~~~~~~--~~~~iiDTpG~~~~~~~~------~~~ 235 (293)
.++++++|++|+|||||+|.|+|..+.. .. .+..+........+..+ ..+.++|+||+....... ...
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 3569999999999999999999875431 11 12233321111112222 257999999997642211 001
Q ss_pred HHHH---HHHHh---h----c--cC--c-EEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 236 IEMC---SITAL---A----H--LR--S-AVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 236 ~e~~---~~~~l---~----~--~~--d-~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
+..+ .+... . . .+ | +++|+.|++. +....+ +.+++.+. .+.|+|+|+||+|.
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~D-ieilk~L~---~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLD-LVTMKKLD---SKVNIIPIIAKADA 188 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHH-HHHHHHTC---SCSEEEEEESCGGG
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHH-HHHHHHHh---hCCCEEEEEcchhc
Confidence 1111 11111 0 0 11 2 4666667655 344443 35666664 47899999999994
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.80 E-value=6.2e-09 Score=87.92 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..++|+++|.+|||||||+++|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999865
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.80 E-value=4.8e-09 Score=91.43 Aligned_cols=59 Identities=32% Similarity=0.433 Sum_probs=40.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCc-ccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPF 230 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~ 230 (293)
.+++++|.||||||||+|+|.+... .+++.+++|+..... .. +..+++|||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF--SL-ENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE--EC-TTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE--Ee-CCCEEEEECCCcccCcC
Confidence 5899999999999999999998876 367778888765432 22 34689999999987654
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.77 E-value=2.3e-07 Score=86.28 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHh------cCCccc-ccCccc--------------eeeeeEE---------------EE
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT------RADVDV-QPYAFT--------------TKSLFVG---------------HT 210 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~------~~~~~~-~~~~~t--------------t~~~~~~---------------~~ 210 (293)
.+..|+++|.+||||||++..|. |.++.. ..-++. ....... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999987 333321 100000 0000000 00
Q ss_pred EecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEec
Q 040152 211 DYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 211 ~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK 290 (293)
...+.++.|+||||........... ...+.... .+|.+++|+|++. +.+...+ ...+.+ .-.+..+|+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~e--l~~i~~~~-~pd~vlLVvDA~~--gq~a~~~---a~~f~~--~~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEE--MKQISNVI-HPHEVILVIDGTI--GQQAYNQ---ALAFKE--ATPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHH--HHHHHHHH-CCSEEEEEEEGGG--GGGHHHH---HHHHHH--SCTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccchHHHHHH--HHHHHHhh-cCceEEEEEeCCC--chhHHHH---HHHHHh--hCCCeEEEEEC
Confidence 0124679999999986432211111 12222222 3689999999986 3333333 333333 23466799999
Q ss_pred cCC
Q 040152 291 TDL 293 (293)
Q Consensus 291 ~Dl 293 (293)
+|.
T Consensus 249 lD~ 251 (443)
T 3dm5_A 249 LDG 251 (443)
T ss_dssp CSS
T ss_pred CCC
Confidence 994
No 214
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.70 E-value=2.4e-07 Score=87.03 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhhh
Q 040152 47 YMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRC 126 (293)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 126 (293)
+..++..+.+.+.+.|.+++.+ ..+++ +++.+|.+.|...|. .+..++.++..+....... .....
T Consensus 199 l~~~l~kt~~~l~~~l~~~~~~-~~ide--~~l~el~~~Ll~aDv------~~~~~~~l~~~l~~~~~~~-----~~~~~ 264 (503)
T 2yhs_A 199 LKRSLLKTKENLGSGFISLFRG-KKIDD--DLFEELEEQLLIADV------GVETTRKIITNLTEGASRK-----QLRDA 264 (503)
T ss_dssp HHHHTHHHHTTSTTHHHHHHTT-CBCSH--HHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHH-----TCCBG
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCCCH--HHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHhc-----cCCCH
Confidence 4455666777788888888764 55664 577777777766552 4455666666665433221 11111
Q ss_pred hhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhc
Q 040152 127 KSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 127 ~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..+++.....+..++... ...+.-.-.....++++|.+|||||||++.|.+
T Consensus 265 ~~~~~~l~~~l~~~l~~~-------------~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKV-------------DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp GGHHHHHHHHHHHHHHTT-------------BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-------------CCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 222222222222222110 001111112345799999999999999999874
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.70 E-value=1.4e-07 Score=87.61 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=63.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHh------cCCccccc--------------------Cccceeeee----------EEEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT------RADVDVQP--------------------YAFTTKSLF----------VGHT 210 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~------~~~~~~~~--------------------~~~tt~~~~----------~~~~ 210 (293)
.+..|+++|.+||||||++..|. +.++.... .+..+.... ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45689999999999999999986 33332100 000000000 0000
Q ss_pred EecCceEEEEeCCCCCC--CCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEE
Q 040152 211 DYKYLRYQVIDTPGILD--RPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVC 288 (293)
Q Consensus 211 ~~~~~~~~iiDTpG~~~--~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~ 288 (293)
...+.++.|+||||... ....... +...+.... .+|.+++|+|++. +.+...+ ...+.+ .-.+..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~--el~~i~~~~-~pd~vlLVlDa~~--gq~a~~~---a~~f~~--~~~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLE--EMKEMYDVL-KPDDVILVIDASI--GQKAYDL---ASRFHQ--ASPIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHH--HHHHHHHHH-CCSEEEEEEEGGG--GGGGHHH---HHHHHH--HCSSEEEEE
T ss_pred HhcCCCEEEEECCCCccccCCHHHHH--HHHHHHHhh-CCcceEEEEeCcc--chHHHHH---HHHHhc--ccCCcEEEE
Confidence 11246789999999755 2221111 112222222 2589999999986 3333333 333332 124678999
Q ss_pred eccC
Q 040152 289 NKTD 292 (293)
Q Consensus 289 NK~D 292 (293)
||+|
T Consensus 246 TKlD 249 (433)
T 3kl4_A 246 TKMD 249 (433)
T ss_dssp ECGG
T ss_pred eccc
Confidence 9998
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.54 E-value=4.1e-07 Score=80.86 Aligned_cols=106 Identities=15% Similarity=0.297 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhh
Q 040152 46 FYMRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYR 125 (293)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 125 (293)
.+..+++.+.+.+.+.|.+++.+. .+++ ++++++.+.|...|. ..+.++.+++.+.+ .+
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~L~~~dv------~~~~~~~~~~~~~~---------~~--- 76 (306)
T 1vma_A 18 FLKKGLQKTKETFFGRVVKLLKGK-KLDD--ETREELEELLIQADV------GVETTEYILERLEE---------KD--- 76 (306)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTC-CCCH--HHHHHHHHHHHHTTC------CHHHHHHHHHHHTT---------CC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHHCCC------CHHHHHHHHHHHHh---------cC---
Confidence 455677788889999999998755 6765 577777766665552 23334444443321 00
Q ss_pred hhhhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCC---CCCCceEeecCCCCCCHhHHHHHHhc
Q 040152 126 CKSLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSI---DPNTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 126 ~~~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.. +++.....+..+ +...... ......|+++|++|+||||++..|.+
T Consensus 77 ~~-~~~~~~~~l~~~-----------------l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 77 GD-ALESLKEIILEI-----------------LNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SC-HHHHHHHHHHHH-----------------TCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH-----------------hCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 11 222221211111 1110011 12345789999999999999998863
No 217
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.53 E-value=4.3e-06 Score=74.76 Aligned_cols=118 Identities=15% Similarity=0.263 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhhhhh
Q 040152 49 RKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRCKS 128 (293)
Q Consensus 49 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (293)
+.++.+.+.+.+.|.+++.+...+++ ++++++.+.|...|. ..+.+..+++.+.+.. ... .....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~dv------~~~~~~~~~~~~~~~~----~~~-~~~~~-- 73 (320)
T 1zu4_A 9 KAMLKSAFNFSKDIKKLSKKYKQADD--EFFEELEDVLIQTDM------GMKMVLKVSNLVRKKT----KRD-TSFEN-- 73 (320)
T ss_dssp HHTHHHHHHHHHHHHHHHHTCCCCSH--HHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHC----CTT-CCHHH--
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHH----hhc-hhHHH--
Confidence 45666777888899998876666765 467777766665552 3445566665554321 111 11110
Q ss_pred hHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHh
Q 040152 129 LKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 129 ~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
+++.....+..++...... ..+..+.-.......|+++|.+|+||||++..|.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~--------~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWT--------NKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC------------CCCCCCTTSCEEEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccc--------ccccCccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 1221112222221110000 0001111112244579999999999999998885
No 218
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.48 E-value=4.2e-07 Score=81.41 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=57.7
Q ss_pred ceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCC-------CCCCCCHH-HHHHHH
Q 040152 201 TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDIS-------GSCGYSIA-QQAALF 272 (293)
Q Consensus 201 tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s-------~~~~~~~~-~~~~~l 272 (293)
.|.+.....+..++..+++|||+|+ ++ +......+...+++++||+|+| +..+.+.. +...|+
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQ------e~---~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~ 223 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQ------RS---ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 223 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCS------HH---HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHH
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCc------hh---HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHH
Confidence 3556667777788889999999998 21 1111234566789999999887 33333332 333677
Q ss_pred HHHhhc--cCCCcEEEEEeccCC
Q 040152 273 HSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 273 ~~l~~~--~~~~piivV~NK~Dl 293 (293)
.++... +.+.|+++|+||+||
T Consensus 224 ~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 224 RTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp HHHHTSGGGTTCEEEEEEECHHH
T ss_pred HHHhhhhccCCceEEEEEECchh
Confidence 776543 468999999999995
No 219
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.46 E-value=4.6e-06 Score=73.91 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhcchhHHHHHhhhHHHHHHHHHHHHHHHHhHhccCCchhhhh
Q 040152 48 MRKVKYTQQNFFEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKDYVKLLKYGDSLYRCK 127 (293)
Q Consensus 48 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~~pfy~~ll~i~~~~~~~k~~l~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (293)
..+++.+.+.+. .+.+++.+...++ +.++++++.+.|...|. ..+.++.+++.+.+.... .......
T Consensus 4 ~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~L~~~dv------~~~~~~~~~~~~~~~~~~-----~~~~~~~ 70 (302)
T 3b9q_A 4 FSGFSKTRENLA-VIDELLLFWNLAE-TDRVLDELEEALLVSDF------GPKITVRIVERLREDIMS-----GKLKSGS 70 (302)
T ss_dssp HHHTHHHHHHHT-HHHHHHTTCCGGG-HHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHT-----TSCCSHH
T ss_pred HHHHHHHHHHHH-HHHHHHcCCCcCC-HHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHhh-----cCCCCHH
Confidence 345666667777 8888876666666 45777887777766552 344566666655543221 1111112
Q ss_pred hhHHHhhhhHHHHHHhhcccHHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhc
Q 040152 128 SLKVAALGRMCTVVKRIGPSLAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+.+.....+...+.. . .....+.-.......++++|++||||||+++.|++
T Consensus 71 ~~~~~~~~~l~~~l~~----------~-~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 71 EIKDALKESVLEMLAK----------K-NSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp HHHHHHHHHHHHHHCC-------------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC----------c-ccccccccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 2222222222111100 0 00000000012344799999999999999999874
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.46 E-value=3.1e-06 Score=78.75 Aligned_cols=115 Identities=21% Similarity=0.285 Sum_probs=62.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHh-------cCCcccccC-ccce--------------eeeeEE---------------E
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT-------RADVDVQPY-AFTT--------------KSLFVG---------------H 209 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~-------~~~~~~~~~-~~tt--------------~~~~~~---------------~ 209 (293)
.+..|+++|.+|+||||+...|. |.++...+. ++.+ .+.... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999986 444431111 1000 000000 0
Q ss_pred EEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEE
Q 040152 210 TDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVC 288 (293)
Q Consensus 210 ~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~ 288 (293)
....+.++.|+||||.........+.+ ..+.. ...+|.+++|+|++. +.+... ....+.. ..+ .-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L--~~~~~-~~~p~~vllVvda~~--g~~~~~---~~~~f~~---~l~i~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEI--KQVHA-SINPVETLFVVDAMT--GQDAAN---TAKAFNE---ALPLTGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHH--HHHHH-HSCCSEEEEEEETTB--CTTHHH---HHHHHHH---HSCCCCEEE
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHH--HHHHH-hhcCcceeEEeecch--hHHHHH---HHHHHhc---cCCCeEEEE
Confidence 011356799999999754321111111 11111 224689999999975 333333 2333332 234 34789
Q ss_pred eccC
Q 040152 289 NKTD 292 (293)
Q Consensus 289 NK~D 292 (293)
||+|
T Consensus 248 nK~D 251 (433)
T 2xxa_A 248 TKVD 251 (433)
T ss_dssp ECTT
T ss_pred ecCC
Confidence 9998
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.44 E-value=1.2e-07 Score=87.11 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=56.7
Q ss_pred eeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCC----------CCCCCHHHHHHH
Q 040152 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISG----------SCGYSIAQQAAL 271 (293)
Q Consensus 202 t~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~----------~~~~~~~~~~~~ 271 (293)
|.+.....+.+++..+++|||+|+... + .....+...+++++||+|+++ ..++ .+...|
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~----r-----~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~--~e~~~~ 272 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDE----R-----RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL--QEALNL 272 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGG----G-----GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH--HHHHHH
T ss_pred eeeeEEEEeecCCccceecccchhhhh----h-----hhhHhhccCCCEEEEEEECcccccccccccccchH--HHHHHH
Confidence 445555566777888999999998221 1 112345566899999999998 3333 233467
Q ss_pred HHHHhhc--cCCCcEEEEEeccCC
Q 040152 272 FHSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 272 l~~l~~~--~~~~piivV~NK~Dl 293 (293)
+..+... +.+.|+++|+||+||
T Consensus 273 ~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 273 FKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp HHHHHTCTTCSSCCEEEEEECHHH
T ss_pred HHHHHhcccCCCCeEEEEEEChhh
Confidence 8877653 467999999999995
No 222
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.41 E-value=1.7e-07 Score=84.93 Aligned_cols=84 Identities=24% Similarity=0.333 Sum_probs=58.7
Q ss_pred ceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCC-------CC-HHHHHHHH
Q 040152 201 TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCG-------YS-IAQQAALF 272 (293)
Q Consensus 201 tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~-------~~-~~~~~~~l 272 (293)
.|.+.....+.+++..+++|||+|+... + .....+...+++++||+|+++..+ .+ ..+...|+
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~----r-----~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~ 249 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSE----R-----KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGG----G-----GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhh----h-----HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHH
Confidence 3556666677788889999999998321 1 112335566899999999998532 22 23334677
Q ss_pred HHHhhc--cCCCcEEEEEeccCC
Q 040152 273 HSIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 273 ~~l~~~--~~~~piivV~NK~Dl 293 (293)
..+... +.+.|+++|+||+||
T Consensus 250 ~~i~~~~~~~~~piiLv~NK~DL 272 (353)
T 1cip_A 250 DSICNNKWFTDTSIILFLNKKDL 272 (353)
T ss_dssp HHHHTCGGGTTSEEEEEEECHHH
T ss_pred HHHHcCccccCCcEEEEEECcCc
Confidence 777653 468999999999995
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.41 E-value=7.5e-07 Score=82.28 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=61.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCcccc-----cCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHH
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADVDVQ-----PYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSIT 242 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~~~~-----~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~ 242 (293)
...++++|++|||||||+|.|+|...... ....+|+....... .....+.++|+||+..........++. .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~---~ 144 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEK---M 144 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHH---T
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHH---c
Confidence 44799999999999999999998432111 11112222111111 111358999999985321111111111 1
Q ss_pred HhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 243 ALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 243 ~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+.. .+.+++ ++... .. .+...+...+.. .+.|+++|.||.|+
T Consensus 145 ~L~~-~~~~~~-lS~G~---~~-kqrv~la~aL~~--~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 145 KFYE-YDFFII-ISATR---FK-KNDIDIAKAISM--MKKEFYFVRTKVDS 187 (413)
T ss_dssp TGGG-CSEEEE-EESSC---CC-HHHHHHHHHHHH--TTCEEEEEECCHHH
T ss_pred CCCc-cCCeEE-eCCCC---cc-HHHHHHHHHHHh--cCCCeEEEEecCcc
Confidence 1222 244444 66543 12 233355555555 47899999999873
No 224
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.41 E-value=3.7e-06 Score=81.57 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
..+.++|+|++|||||||++.++|-.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 44569999999999999999999874
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.40 E-value=6.3e-06 Score=72.86 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred CceEeecCCCCCCHhHHHHHHh------cCCcccccCc-cc--e------------eeeeEE---------------EEE
Q 040152 168 TRTILICGYPNVGKSSFMNKIT------RADVDVQPYA-FT--T------------KSLFVG---------------HTD 211 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~------~~~~~~~~~~-~t--t------------~~~~~~---------------~~~ 211 (293)
...++++|.+|+||||++..|. +.++...+.. +. + .....+ ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5578899999999999999886 3333211110 00 0 000000 001
Q ss_pred ecCceEEEEeCCCCCCCCCCchhHHH-HHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEe
Q 040152 212 YKYLRYQVIDTPGILDRPFEDRNIIE-MCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCN 289 (293)
Q Consensus 212 ~~~~~~~iiDTpG~~~~~~~~~~~~e-~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~N 289 (293)
..+.++.|+||||...... ....+. ...+... ..+|.+++|+|++. +.+.. ...+.+.+ ..| ..+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~-~~~l~~el~~i~~~-~~~d~vllVvda~~--g~~~~---~~~~~~~~---~~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGE-EAALLEEMKNIYEA-IKPDEVTLVIDASI--GQKAY---DLASKFNQ---ASKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTTC-HHHHHHHHHHHHHH-HCCSEEEEEEEGGG--GGGHH---HHHHHHHH---TCTTEEEEEE
T ss_pred hCCCCEEEEeCCCCccccc-HHHHHHHHHHHHHH-hcCCEEEEEeeCCc--hHHHH---HHHHHHHh---hCCCCEEEEe
Confidence 1345799999999864111 111111 1112222 23689999999974 22222 33333333 345 778999
Q ss_pred ccC
Q 040152 290 KTD 292 (293)
Q Consensus 290 K~D 292 (293)
|+|
T Consensus 248 k~D 250 (297)
T 1j8m_F 248 KMD 250 (297)
T ss_dssp CGG
T ss_pred CCC
Confidence 998
No 226
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.38 E-value=1.5e-07 Score=85.55 Aligned_cols=83 Identities=23% Similarity=0.306 Sum_probs=54.9
Q ss_pred eeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC--------CCCHHHHHHHHH
Q 040152 202 TKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC--------GYSIAQQAALFH 273 (293)
Q Consensus 202 t~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~--------~~~~~~~~~~l~ 273 (293)
|.++....+.+++..+++|||+|+... + .....+...+++++||+|+|+.+ .....+...|+.
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~----r-----~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~ 258 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSE----R-----KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE 258 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhh----h-----hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHH
Confidence 555666677778889999999998321 1 11123455679999999999832 112233346777
Q ss_pred HHhhc--cCCCcEEEEEeccCC
Q 040152 274 SIKSL--FMNKPLIIVCNKTDL 293 (293)
Q Consensus 274 ~l~~~--~~~~piivV~NK~Dl 293 (293)
.+... +.+.|+|+|+||+||
T Consensus 259 ~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 259 TIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp HHHTCGGGTTSEEEEEEECHHH
T ss_pred HHhcchhhCCCCEEEEEEChhh
Confidence 77653 468999999999995
No 227
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.35 E-value=1e-06 Score=82.04 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC---------------CcccccCccceeeeeEEEEEec-----------CceEEEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA---------------DVDVQPYAFTTKSLFVGHTDYK-----------YLRYQVI 220 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~---------------~~~~~~~~~tt~~~~~~~~~~~-----------~~~~~ii 220 (293)
+...|.|+|.+++|||||+|.|.+. ....-....+|...+.|.+.|. +..+.++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4567999999999999999999864 1211122235555555655553 2458999
Q ss_pred eCCCCCCC
Q 040152 221 DTPGILDR 228 (293)
Q Consensus 221 DTpG~~~~ 228 (293)
||||+.+.
T Consensus 146 DTeG~~~~ 153 (447)
T 3q5d_A 146 DTQGTFDS 153 (447)
T ss_dssp EEECCCSS
T ss_pred cCCccccc
Confidence 99999654
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.35 E-value=1.7e-05 Score=71.94 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...++++|++||||||+++.|++
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45799999999999999999874
No 229
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.19 E-value=5.7e-07 Score=81.54 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=46.1
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCC-------CCCCCC-HHHHHHHHHHHhhc--cCCCc
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDIS-------GSCGYS-IAQQAALFHSIKSL--FMNKP 283 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s-------~~~~~~-~~~~~~~l~~l~~~--~~~~p 283 (293)
...+++|||+|+... + .....+...++++++|+|++ +..+.+ ..+...|+.++... +.+.|
T Consensus 182 ~v~l~iwDtaGQe~~----r-----~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE----R-----RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTTG----G-----GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchhh----h-----HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 357999999998321 1 11123455679999999998 111222 23333677777653 46899
Q ss_pred EEEEEeccCC
Q 040152 284 LIIVCNKTDL 293 (293)
Q Consensus 284 iivV~NK~Dl 293 (293)
+++|+||+||
T Consensus 253 iiLvgNK~DL 262 (354)
T 2xtz_A 253 FMLFLNKFDI 262 (354)
T ss_dssp EEEEEECHHH
T ss_pred EEEEEECcch
Confidence 9999999995
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.13 E-value=1.1e-05 Score=72.33 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=61.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC------CcccccCccc-----------eeeeeEEEE-------------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA------DVDVQPYAFT-----------TKSLFVGHT------------------- 210 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~------~~~~~~~~~t-----------t~~~~~~~~------------------- 210 (293)
....++++|++||||||+++.|.+. .+.....+.. ........+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3458999999999999999998753 2211110000 000000000
Q ss_pred EecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEec
Q 040152 211 DYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNK 290 (293)
Q Consensus 211 ~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK 290 (293)
...+..+.++||+|...........+... ..++ .+|-.++++|++.. .+.. ..+..+... -..-++++||
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i-~ral--~~de~llvLDa~t~--~~~~---~~~~~~~~~--~~it~iilTK 277 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKI-ARVT--KPNLVIFVGDALAG--NAIV---EQARQFNEA--VKIDGIILTK 277 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHH-HHHH--CCSEEEEEEEGGGT--THHH---HHHHHHHHH--SCCCEEEEEC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHH-HHHh--cCCCCEEEEecHHH--HHHH---HHHHHHHHh--cCCCEEEEeC
Confidence 00134578899999865433323222211 1122 25889999998763 2222 334444321 1234788899
Q ss_pred cC
Q 040152 291 TD 292 (293)
Q Consensus 291 ~D 292 (293)
.|
T Consensus 278 lD 279 (328)
T 3e70_C 278 LD 279 (328)
T ss_dssp GG
T ss_pred cC
Confidence 88
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.06 E-value=7.2e-05 Score=69.24 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....|+++|.+|+||||++..|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999998886
No 232
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.04 E-value=2.9e-05 Score=68.83 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC------CcccccCccce-----------eeeeEEEE-------------------
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA------DVDVQPYAFTT-----------KSLFVGHT------------------- 210 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~------~~~~~~~~~tt-----------~~~~~~~~------------------- 210 (293)
....++++|++||||||+++.|.+. .+......... .....+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998732 22111100000 00000000
Q ss_pred EecCceEEEEeCCCCCCCCCCchhHHHHHHH---HHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEE
Q 040152 211 DYKYLRYQVIDTPGILDRPFEDRNIIEMCSI---TALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIV 287 (293)
Q Consensus 211 ~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~---~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV 287 (293)
...+..+.++||+|...........+..+.. +++...++.+++++|++.. .... ..+..+... ....+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~---~~~~~~~~~--~~~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGL---EQAKKFHEA--VGLTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHH---HHHHHHHHH--HCCSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHH---HHHHHHHHH--cCCcEEE
Confidence 0113457799999986543222233332211 2344556888999998763 2222 333333321 1234677
Q ss_pred EeccC
Q 040152 288 CNKTD 292 (293)
Q Consensus 288 ~NK~D 292 (293)
+||.|
T Consensus 254 vTh~d 258 (304)
T 1rj9_A 254 VTKLD 258 (304)
T ss_dssp EECTT
T ss_pred EECCc
Confidence 88876
No 233
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.03 E-value=1.3e-06 Score=77.53 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcccccCccceeeeeEEEEEecCceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCC-
Q 040152 183 SFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSC- 261 (293)
Q Consensus 183 Slin~l~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~- 261 (293)
+|+.+++...+....+..|.-+........ +..+++||| +..... . ...+...+|++++|+|++++.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~-~~~~~iwD~--qer~~~-l--------~~~~~~~ad~vilV~D~~~~~~ 99 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDE-TGSGVIENV--LHRKNL-L--------TKPHVANVDQVILVVTVKMPET 99 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCC-SSSEEEEEE--CCCSCE-E--------TTTTEESCCEEEEEECSSTTCC
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcC-CCeEEEEEE--ccccce-e--------eccccccCCEEEEEEeCCCCCC
Confidence 567677666664122322222222222222 237899999 321110 0 013456689999999999875
Q ss_pred CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 262 GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 262 ~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
++...+ .|+..+.. .+.|+++|+||+||
T Consensus 100 s~~~l~--~~l~~~~~--~~~piilv~NK~DL 127 (301)
T 1u0l_A 100 STYIID--KFLVLAEK--NELETVMVINKMDL 127 (301)
T ss_dssp CHHHHH--HHHHHHHH--TTCEEEEEECCGGG
T ss_pred CHHHHH--HHHHHHHH--CCCCEEEEEeHHHc
Confidence 343333 56766655 57999999999996
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.02 E-value=4.4e-05 Score=67.40 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....++++|.+|+||||++..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35589999999999999999885
No 235
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.60 E-value=0.00013 Score=60.02 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=39.7
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
.++.|+|||+... . ..... ...+|.++++++++..+ ......++.++.+.....+.++.+|+|++|
T Consensus 76 yD~viiD~~~~~~-------~---~~~~~-l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 76 YDFAIVDGAGSLS-------V---ITSAA-VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp SSEEEEECCSSSS-------H---HHHHH-HHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCEEEEECCCCCC-------H---HHHHH-HHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 5789999998741 1 11122 22369999999987754 333322233433332223567899999987
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.50 E-value=2.5e-05 Score=69.26 Aligned_cols=57 Identities=28% Similarity=0.287 Sum_probs=33.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCCcc-cccCc-------cceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRADVD-VQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~-------~tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
..++++|++|||||||+|.|.+.... ..... .+|.... ..... ...++||||+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCccccc
Confidence 37999999999999999999876432 22221 2333222 12222 24789999987643
No 237
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.48 E-value=0.00078 Score=62.56 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc------------------CCcccc-cCccceeeeeEEEEE----e-cC--ceEEEE
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR------------------ADVDVQ-PYAFTTKSLFVGHTD----Y-KY--LRYQVI 220 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~------------------~~~~~~-~~~~tt~~~~~~~~~----~-~~--~~~~ii 220 (293)
....|.|+|.+++|||+|+|.|++ ..|.+. ....+|+++..-... . .+ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 445788999999999999996641 123222 223456665543211 1 22 358999
Q ss_pred eCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhh
Q 040152 221 DTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKS 277 (293)
Q Consensus 221 DTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~ 277 (293)
||.|+.+............++..+. ++++||-...+ ...+..+++.++-++.+
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~LL--SS~~IyN~~~~--i~~~~L~~L~~~tel~~ 198 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTMI--SSIQVYNLSQN--VQEDDLQHLQLFTEYGR 198 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHHH--CSEEEEEEESS--CCHHHHHHHHHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHHH--hhheeeccccc--CCHHHHHHHHHHHHHHH
Confidence 9999977543322211112233222 35665554432 22234455555555543
No 238
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.43 E-value=0.00021 Score=63.16 Aligned_cols=54 Identities=28% Similarity=0.320 Sum_probs=33.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc-cccCcc-------ceeeeeEEEEEecCceEEEEeCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD-VQPYAF-------TTKSLFVGHTDYKYLRYQVIDTPGILD 227 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~~-------tt~~~~~~~~~~~~~~~~iiDTpG~~~ 227 (293)
.++++|++|||||||+|.|. .... ...... +|.... ...... .-.++||||+..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~-~g~v~d~pg~~~ 228 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGK-GSFVGDTPGFSK 228 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETT-TEEEESSCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCC-CcEEEECcCcCc
Confidence 78999999999999999998 5322 222221 332221 122211 247899999864
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.40 E-value=5.1e-05 Score=62.88 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=35.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCCc--ccccCccceeeeeEEEEEecCceEEEEeCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRADV--DVQPYAFTTKSLFVGHTDYKYLRYQVIDTP 223 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~~iiDTp 223 (293)
...|+++|++|||||||++.|.+... .....+.||+.+..+. .+|..+.++|..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~ 74 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTE 74 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHH
Confidence 44789999999999999999987543 1234445666555443 344444444443
No 240
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.27 E-value=0.00015 Score=65.49 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=35.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCc-c-cccCc---c----ceeeeeEEEEEecCceEEEEeCCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADV-D-VQPYA---F----TTKSLFVGHTDYKYLRYQVIDTPGILDRP 229 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~-~-~~~~~---~----tt~~~~~~~~~~~~~~~~iiDTpG~~~~~ 229 (293)
.++++|++|||||||+|.|.+... . ..... + +|.....+.+. ....++||||+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~---q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP---HGGDVIDSPGVREFG 282 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT---TSCEEEECHHHHTCC
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC---CCCEecCcccHHHhh
Confidence 799999999999999999998654 2 22111 1 23222222221 224689999986654
No 241
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.20 E-value=0.00043 Score=61.08 Aligned_cols=56 Identities=29% Similarity=0.350 Sum_probs=33.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc-cccCc-------cceeeeeEEEEEecCceEEEEeCCCCCCC
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD-VQPYA-------FTTKSLFVGHTDYKYLRYQVIDTPGILDR 228 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~-~~~~~-------~tt~~~~~~~~~~~~~~~~iiDTpG~~~~ 228 (293)
.++++|++|||||||+|.|.+.... ..... .+|.... ..... ..-.++||||+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFD-FGGYVVDTPGFANL 234 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEECT-TSCEEESSCSSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEEcC-CCCEEEECcCCCcc
Confidence 6899999999999999999986532 22111 1222211 11221 12478999998554
No 242
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.17 E-value=0.0004 Score=61.13 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....++++|.+|+||||++..|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999988863
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.10 E-value=0.00024 Score=57.58 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
..++++|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998743
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.04 E-value=0.00016 Score=59.28 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=27.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcCCcc--cccCccceeeeeEE
Q 040152 170 TILICGYPNVGKSSFMNKITRADVD--VQPYAFTTKSLFVG 208 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~~~--~~~~~~tt~~~~~~ 208 (293)
-|+++|++|||||||+++|...... .-..+.||+.+-.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g 43 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC
Confidence 4899999999999999999865321 22345566655443
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.96 E-value=0.00052 Score=60.58 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=34.7
Q ss_pred hhccCcEEEEEEeCCCCC-CCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 244 LAHLRSAVLFFLDISGSC-GYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 244 l~~~~d~il~v~D~s~~~-~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....+|++++|+|++++. ++...+ +|+..+.. .+.|+++|+||+||
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~--~~l~~~~~--~~~~~ilV~NK~DL 122 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLD--NMLVVYEY--FKVEPVIVFNKIDL 122 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHH--HHHHHHHH--TTCEEEEEECCGGG
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHH--HHHHHHHh--CCCCEEEEEEcccC
Confidence 455679999999999874 443333 56666655 58999999999996
No 246
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.80 E-value=0.00059 Score=55.41 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=20.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.78 E-value=0.00058 Score=56.30 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=20.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..++++|++|||||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999863
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.72 E-value=0.0013 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+|+|++|+|||||++.|.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999998865
No 249
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.61 E-value=0.0026 Score=55.50 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=30.4
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
...+|+|++|+|+.++.+..... +..+. .++|.++|+||+||
T Consensus 21 l~~aDvVl~VvDAr~p~~~~~~~----l~~~l---~~kp~ilVlNK~DL 62 (282)
T 1puj_A 21 LKLIDIVYELVDARIPMSSRNPM----IEDIL---KNKPRIMLLNKADK 62 (282)
T ss_dssp GGGCSEEEEEEETTSTTTTSCHH----HHHHC---SSSCEEEEEECGGG
T ss_pred HhhCCEEEEEEeCCCCCccCCHH----HHHHH---CCCCEEEEEECccc
Confidence 34469999999999987654221 22221 47999999999996
No 250
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.58 E-value=0.036 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...+++.|+||+|||+++.++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.56 E-value=0.0012 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...++++|++|+||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999999876
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.55 E-value=0.0013 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..++++|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.50 E-value=0.0012 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999998643
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.48 E-value=0.0016 Score=53.87 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcCC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
....|+++|++||||||+++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34579999999999999999998654
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.46 E-value=0.0014 Score=54.95 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
...++++|++|||||||++.|.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3479999999999999999998754
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.45 E-value=0.0015 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|||||||++.+.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998753
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.45 E-value=0.0014 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
..++++|++|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998743
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.29 E-value=0.0022 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
...|+++|++||||||+++.|.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3479999999999999999998654
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.27 E-value=0.002 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.480 Sum_probs=20.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|+++|++|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 260
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.26 E-value=0.026 Score=43.60 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|++.|++|+|||++...+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999998764
No 261
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.24 E-value=0.0067 Score=53.14 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=36.8
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhc--cCCCcEE-EEEecc
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSL--FMNKPLI-IVCNKT 291 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~--~~~~pii-vV~NK~ 291 (293)
.++.|+|||+...... .......+|.+++|++++.. .......+++.+... ..+.+++ +|+|++
T Consensus 157 yD~ViiD~p~~~~~~~----------~~~~l~~aD~viiv~~~~~~---s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG----------FAAPLQHADQAVVVTANDFD---SIYAMNRIIAAVQAKSKNYKVRLAGCVANRS 223 (307)
T ss_dssp CSEEEEEECCSSCCGG----------GGGGGGTCSEEEEEECSSHH---HHHHHHHHHHHHHTTTTTCCCEEEEEEEESC
T ss_pred CCEEEEeCCCccchHH----------HHHHHHHCCEEEEEecCcHH---HHHHHHHHHHHHHHhhhcCCCceEEEEEecC
Confidence 4689999988643211 01123446999999887542 112222344444432 1345554 899998
Q ss_pred C
Q 040152 292 D 292 (293)
Q Consensus 292 D 292 (293)
+
T Consensus 224 ~ 224 (307)
T 3end_A 224 R 224 (307)
T ss_dssp S
T ss_pred C
Confidence 6
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.23 E-value=0.0025 Score=54.04 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|||||||++.++|-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999998754
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.23 E-value=0.0022 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|+++|++||||||+.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 447999999999999999999753
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.23 E-value=0.002 Score=51.63 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.1
Q ss_pred ceEeecCCCCCCHhHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~ 189 (293)
-.++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999544
No 265
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.051 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=21.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.-|++.|+||+|||+|+.++++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 266
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.23 E-value=0.0069 Score=50.12 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=38.1
Q ss_pred CceEEEEeCCCC-CCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 214 YLRYQVIDTPGI-LDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 214 ~~~~~iiDTpG~-~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
..++.++|||+. ... ..... ...+|.++++++++.. ........++.+... .+.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~----------~~~~~-l~~aD~viiv~~~~~~---~~~~~~~~~~~l~~~-~~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE----------DLEAL-ADGCDLLVIPSTPDAL---ALDALMLTIETLQKL-GNNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSS----------HHHHH-HHTSSEEEEEECSSHH---HHHHHHHHHHHHHHT-CSSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcH----------HHHHH-HHHCCEEEEEecCCch---hHHHHHHHHHHHHhc-cCCCEEEEEEecC
Confidence 346899999986 321 11112 2346999999987652 122222344444442 1567889999986
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.19 E-value=0.0023 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.18 E-value=0.0026 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|++|+||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 269
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.18 E-value=0.0038 Score=56.57 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 239 CSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 239 ~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
..+..+.+.+|++++|+|++++ .. .|..++.....++|+++|+||+||
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~-----~~--~~~~~l~~~~~~~p~ilV~NK~DL 108 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDF-----NG--SWLPGLHRFVGNNKVLLVGNKADL 108 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSH-----HH--HCCTTHHHHSSSSCEEEEEECGGG
T ss_pred HHHHHHhccCcEEEEEEECCCC-----cc--cHHHHHHHHhCCCcEEEEEEChhc
Confidence 3445566667899999999873 22 344444444458999999999996
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.15 E-value=0.0021 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.15 E-value=0.0023 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|+++|++|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 272
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.15 E-value=0.0018 Score=58.71 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=32.6
Q ss_pred HHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccCC
Q 040152 240 SITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 240 ~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
.+..+.+.++++++|+|++++.+ .|..++.....++|+++|+||+||
T Consensus 64 ~L~~~~~~~~lil~VvD~~d~~~-------s~~~~l~~~l~~~piilV~NK~DL 110 (369)
T 3ec1_A 64 MLHRIGESKALVVNIVDIFDFNG-------SFIPGLPRFAADNPILLVGNKADL 110 (369)
T ss_dssp HHHHHHHHCCEEEEEEETTCSGG-------GCCSSHHHHCTTSCEEEEEECGGG
T ss_pred HHHHhhccCcEEEEEEECCCCCC-------chhhHHHHHhCCCCEEEEEEChhc
Confidence 44555566789999999998643 122223333347899999999996
No 273
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.14 E-value=0.012 Score=49.05 Aligned_cols=52 Identities=4% Similarity=0.123 Sum_probs=33.7
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHH-HHHHHhhc--cCCCcEEEEEecc-CC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAA-LFHSIKSL--FMNKPLIIVCNKT-DL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~-~l~~l~~~--~~~~piivV~NK~-Dl 293 (293)
..++...|+++||+|+++....+..+.++ +...+.+. ..+.|+++.+||. |+
T Consensus 120 r~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl 175 (227)
T 3l82_B 120 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 175 (227)
T ss_dssp HHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT
T ss_pred HHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc
Confidence 34566679999999999986665333221 12222222 2578999999995 54
No 274
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.051 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=21.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.-|++.|+||+|||+|+.++++.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999864
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.13 E-value=0.0031 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.8
Q ss_pred CceEeecCCCCCCHhHHHHHHh---cCC
Q 040152 168 TRTILICGYPNVGKSSFMNKIT---RAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~---~~~ 192 (293)
+..|+++|++||||||+++.|+ +..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3479999999999999999998 654
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.12 E-value=0.0028 Score=50.04 Aligned_cols=20 Identities=45% Similarity=0.793 Sum_probs=18.6
Q ss_pred ceEeecCCCCCCHhHHHHHH
Q 040152 169 RTILICGYPNVGKSSFMNKI 188 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l 188 (293)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36999999999999999999
No 277
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.11 E-value=0.0026 Score=54.14 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998763
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.11 E-value=0.0031 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.10 E-value=0.0031 Score=50.14 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|+.|+|||||++.+++.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998765
No 280
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.07 E-value=0.0026 Score=51.49 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.3
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.++++|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999975
No 281
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.06 E-value=0.0028 Score=53.01 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998864
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.05 E-value=0.0035 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998864
No 283
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.04 E-value=0.006 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988754
No 284
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.04 E-value=0.003 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|||||||++.++|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998854
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.04 E-value=0.0034 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.7
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|+++|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.02 E-value=0.0037 Score=49.86 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.02 E-value=0.0029 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999998753
No 288
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.01 E-value=0.0031 Score=54.22 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998764
No 289
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.01 E-value=0.0037 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.00 E-value=0.0036 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|++||||||+...|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 44799999999999999999864
No 291
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.99 E-value=0.0032 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.98 E-value=0.0035 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.-.++++|++|+|||||++.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 347999999999999999998763
No 293
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.97 E-value=0.0034 Score=52.96 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998864
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.97 E-value=0.0032 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=19.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 295
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.97 E-value=0.0039 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998753
No 296
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.97 E-value=0.0026 Score=59.54 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+++|.+|+||||+.++|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999754
No 297
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.086 Score=48.99 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.-|++.|+||+|||+|..++++.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 457999999999999999999864
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.95 E-value=0.003 Score=52.57 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=20.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++.++|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999987
No 299
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.95 E-value=0.011 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.229 Sum_probs=20.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+..|+++|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988853
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.94 E-value=0.0038 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.-.++|+|++|+|||||++.|.+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 347999999999999999998753
No 301
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.94 E-value=0.0039 Score=50.40 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+.++++|++|+|||||+++|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 302
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.93 E-value=0.0036 Score=53.23 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
No 303
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.93 E-value=0.0043 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 368999999999999999998864
No 304
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.92 E-value=0.008 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+++|.+|+||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.92 E-value=0.004 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|+++|++|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999998754
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.92 E-value=0.0037 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 307
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.086 Score=48.52 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=21.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.-|++.|+||+|||+|..++++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 357999999999999999999864
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.90 E-value=0.0036 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 309
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.90 E-value=0.05 Score=47.37 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=38.5
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
.++.|+|||+..... + ...+...+|.+++|+...... .......++.+... ....+-+|+|++|
T Consensus 202 yD~VIIDtpp~~~~~--d--------a~~l~~~aD~vllVv~~~~~~---~~~~~~~~~~l~~~-g~~~~GvVlN~v~ 265 (286)
T 3la6_A 202 YDLVLIDTPPILAVT--D--------AAIVGRHVGTTLMVARYAVNT---LKEVETSLSRFEQN-GIPVKGVILNSIF 265 (286)
T ss_dssp CSEEEEECCCTTTCT--H--------HHHHTTTCSEEEEEEETTTSB---HHHHHHHHHHHHHT-TCCCCEEEEEEEC
T ss_pred CCEEEEcCCCCcchH--H--------HHHHHHHCCeEEEEEeCCCCc---HHHHHHHHHHHHhC-CCCEEEEEEcCcc
Confidence 358999999975321 1 123445579999999987632 22222344445442 1234568999987
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.90 E-value=0.0039 Score=53.33 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++.++|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 311
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.88 E-value=0.0045 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999998863
No 312
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.88 E-value=0.0046 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999753
No 313
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.87 E-value=0.0047 Score=53.09 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 314
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.87 E-value=0.0065 Score=52.64 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=19.8
Q ss_pred EeecCCCCCCHhHHHHHHhcC
Q 040152 171 ILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~ 191 (293)
++++|+||+|||||++++++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.87 E-value=0.0039 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|++.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 316
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.86 E-value=0.004 Score=54.26 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998764
No 317
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.84 E-value=0.0094 Score=47.37 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988754
No 318
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.84 E-value=0.0051 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
-.++++|++|+|||||++.++|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999996
No 319
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.83 E-value=0.029 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|+||+|||+++.++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999764
No 320
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0081 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=20.2
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....|+|+|.+|+|||||.+.|.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999998774
No 321
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.83 E-value=0.0049 Score=53.42 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.81 E-value=0.0046 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|++|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 323
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.80 E-value=0.0047 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+|+|++|+|||||++.|.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 455799999999999999999875
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.80 E-value=0.0043 Score=53.19 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.80 E-value=0.005 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.78 E-value=0.0048 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.78 E-value=0.011 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+..|+++|+|||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.77 E-value=0.0047 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.3
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 329
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.77 E-value=0.099 Score=45.02 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=37.7
Q ss_pred ceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEE-EEEeccC
Q 040152 215 LRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLI-IVCNKTD 292 (293)
Q Consensus 215 ~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~pii-vV~NK~D 292 (293)
.++.|+|||+..... +. ..+...+|.+++|+..... ........++.+.. .+.+++ +|+|++|
T Consensus 192 yD~VIIDtpp~~~~~--d~--------~~l~~~aD~vilVv~~~~~---~~~~~~~~~~~l~~--~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT--DA--------QLFSKFTGNVVYVVNSENN---NKDEVKKGKELIEA--TGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTCS--HH--------HHHHHHHCEEEEEEETTSC---CHHHHHHHHHHHHT--TTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchHH--HH--------HHHHHHCCEEEEEEeCCCC---cHHHHHHHHHHHHh--CCCCEEEEEEeCCc
Confidence 368999999975321 11 1122335899999998653 22222234444544 355665 8999987
No 330
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.76 E-value=0.0034 Score=52.69 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=15.7
Q ss_pred ceEeecCCCCCCHhHHHHHHh-cC
Q 040152 169 RTILICGYPNVGKSSFMNKIT-RA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~-~~ 191 (293)
..++++|++||||||+++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999 64
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.76 E-value=0.0054 Score=49.34 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.75 E-value=0.0055 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998864
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.73 E-value=0.0061 Score=49.24 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998765
No 334
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.71 E-value=0.0066 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.70 E-value=0.0055 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 336
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.11 Score=47.45 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=21.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.-|++.|+||+|||+|..++++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 346999999999999999999864
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.64 E-value=0.0055 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.3
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 338
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.63 E-value=0.2 Score=43.37 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....+++.|+||+|||+++.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999877643
No 339
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.0025 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..++++|++|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999865
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.63 E-value=0.0046 Score=51.35 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
-.++++|++|+|||||++.+++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999873
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.61 E-value=0.0079 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+++|.+|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999875
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.61 E-value=0.0076 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=20.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+++|.+|+||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 343
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.59 E-value=0.0065 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|++|+|||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999876
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.57 E-value=0.0061 Score=48.97 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=19.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 345
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.56 E-value=0.0084 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHh
Q 040152 167 NTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
....|+++|++|+||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999998
No 346
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.56 E-value=0.006 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.2
Q ss_pred ceEeecCCCCCCHhHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~ 189 (293)
-.++++|++|+|||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 368999999999999999887
No 347
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.54 E-value=0.0067 Score=50.07 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.0
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.53 E-value=0.0048 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.-.++++|++|+|||||++.|.+-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3479999999999999999998753
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.51 E-value=0.0068 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+..|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 350
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.51 E-value=0.0075 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.9
Q ss_pred CceEeecCCCCCCHhHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~ 189 (293)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 351
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.51 E-value=0.015 Score=48.70 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=36.1
Q ss_pred CceEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCcEEEEEeccC
Q 040152 214 YLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTD 292 (293)
Q Consensus 214 ~~~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~piivV~NK~D 292 (293)
..++.|+|||+..... . ...+ ..+|.+++|++++..+ . .....+.+.+... ....+.+|+|+.+
T Consensus 131 ~yD~viiD~pp~~~~~--~--------~~~l-~~aD~viiv~~~~~~s-~--~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEHL--T--------RGTA-KAVDMMIAVIEPNLNS-I--KTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTTC--C--------HHHH-TTCSEEEEEECSSHHH-H--HHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccHH--H--------HHHH-HHCCEEEEecCCCHHH-H--HHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 4568999999865331 1 1222 4469999999886521 1 1111223322222 2356789999875
No 352
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.49 E-value=0.012 Score=48.75 Aligned_cols=39 Identities=23% Similarity=0.531 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhc
Q 040152 148 LAYLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 148 l~~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...+......++..|. ...+++.|+||+||||++.++..
T Consensus 42 ~~f~~~l~~~~~~iPk----kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 42 ITFLGALKSFLKGTPK----KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHHTCTT----CSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc----ccEEEEECCCCCCHHHHHHHHHH
Confidence 3445555555554443 23699999999999999888764
No 353
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.49 E-value=0.0077 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=19.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|++.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 354
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.48 E-value=0.0064 Score=47.67 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...++++|++|+|||||++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.47 E-value=0.0092 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+++|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998864
No 356
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.46 E-value=0.0063 Score=54.90 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998753
No 357
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.46 E-value=0.0075 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=22.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+++|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999998765
No 358
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.46 E-value=0.012 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+..|+++|.||+||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999865
No 359
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.46 E-value=0.0073 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 378999999999999999998864
No 360
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.45 E-value=0.0075 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.0
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.45 E-value=0.0081 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 362
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.45 E-value=0.0084 Score=49.76 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+|+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
No 363
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.45 E-value=0.0069 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=19.0
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|+++|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988853
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.44 E-value=0.0086 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.42 E-value=0.0074 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+..|+++|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 366
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.42 E-value=0.011 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+..|++.|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
No 367
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.41 E-value=0.21 Score=43.04 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|+||+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0083 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988853
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.40 E-value=0.0084 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+.+.++|++|+|||||+++|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.39 E-value=0.0084 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+..|+++|.|||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 371
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.39 E-value=0.0064 Score=54.85 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|||||||++.+.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999864
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.39 E-value=0.0061 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.611 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.+.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998763
No 373
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.39 E-value=0.013 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988654
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.38 E-value=0.007 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
..++++|++|+|||||++.|.+.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998753
No 375
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.33 E-value=0.0097 Score=53.79 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|||||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
No 376
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.33 E-value=0.0076 Score=54.30 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998764
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.29 E-value=0.0084 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...++++|++|+|||||++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999975
No 378
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.29 E-value=0.0064 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 379
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.28 E-value=0.0082 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|||||||++.+.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999999864
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.24 E-value=0.01 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.24 E-value=0.0088 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.1
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+++|++|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999876
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.22 E-value=0.01 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=19.2
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.22 E-value=0.0078 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=16.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+..|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 384
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.20 E-value=0.011 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+.|++.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 385
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.19 E-value=0.076 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.+++.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.19 E-value=0.0089 Score=54.22 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68999999999999999999864
No 387
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.18 E-value=0.097 Score=46.21 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|++.|+||+|||+|+.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999864
No 388
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.18 E-value=0.024 Score=49.54 Aligned_cols=52 Identities=4% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHhhccCcEEEEEEeCCCCCCCCHHHHHH-HHHHHhhc--cCCCcEEEEEec-cCC
Q 040152 242 TALAHLRSAVLFFLDISGSCGYSIAQQAA-LFHSIKSL--FMNKPLIIVCNK-TDL 293 (293)
Q Consensus 242 ~~l~~~~d~il~v~D~s~~~~~~~~~~~~-~l~~l~~~--~~~~piivV~NK-~Dl 293 (293)
..++...|+++||+|++++...+..+.+. +...+.+. ..+.|++|.+|| .|+
T Consensus 205 r~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDl 260 (312)
T 3l2o_B 205 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 260 (312)
T ss_dssp HHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTT
T ss_pred HHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccc
Confidence 34566679999999999987766333222 21223221 258999999997 564
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.18 E-value=0.01 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+.|+++|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988853
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.17 E-value=0.011 Score=50.05 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.++.|++.|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999864
No 391
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.17 E-value=0.012 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999998864
No 392
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.17 E-value=0.012 Score=53.21 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68999999999999999998764
No 393
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.16 E-value=0.0093 Score=54.08 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.+.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999998764
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.15 E-value=0.0091 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 395
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.14 E-value=0.01 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.1
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|+++|++|+|||||...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 396
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.11 E-value=0.011 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 397
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.10 E-value=0.0096 Score=56.33 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++++++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998754
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.10 E-value=0.012 Score=47.12 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.09 E-value=0.01 Score=49.06 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.03 E-value=0.0095 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
-.++|+|++|+|||||++.+++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999764
No 401
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.03 E-value=0.26 Score=42.96 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=37.1
Q ss_pred eEEEEeCCCCCCCCCCchhHHHHHHHHHhhccCcEEEEEEeCCCCCCCCHHHHHHHHHHHhhccCCCc-EEEEEeccC
Q 040152 216 RYQVIDTPGILDRPFEDRNIIEMCSITALAHLRSAVLFFLDISGSCGYSIAQQAALFHSIKSLFMNKP-LIIVCNKTD 292 (293)
Q Consensus 216 ~~~iiDTpG~~~~~~~~~~~~e~~~~~~l~~~~d~il~v~D~s~~~~~~~~~~~~~l~~l~~~~~~~p-iivV~NK~D 292 (293)
++.|+|||+..... + ...+...+|.+++|+....... .... ..++.+.. .+.+ .-+|+|++|
T Consensus 215 D~VIIDtpp~~~~~--d--------~~~l~~~ad~vilV~~~~~~~~-~~~~--~~~~~l~~--~~~~~~GvVlN~~~ 277 (299)
T 3cio_A 215 DLVIVDTPPMLAVS--D--------AAVVGRSVGTSLLVARFGLNTA-KEVS--LSMQRLEQ--AGVNIKGAILNGVI 277 (299)
T ss_dssp SEEEEECCCTTTCT--H--------HHHHGGGCSEEEEEEETTTSCT-THHH--HHHHHHHH--TTCCCCCEEEEECC
T ss_pred CEEEEcCCCCchhH--H--------HHHHHHHCCEEEEEEcCCCChH-HHHH--HHHHHHHh--CCCCeEEEEEeCCc
Confidence 68999999975321 1 1123455799999998876432 3222 33444443 2334 348889987
No 402
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.02 E-value=0.01 Score=49.83 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|++.|..|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999865
No 403
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.043 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.-|++.|+||+|||+|..++++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 404
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.01 E-value=0.012 Score=47.24 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 405
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.01 E-value=0.013 Score=48.67 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=18.9
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|+++|+|||||+|....|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 406
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.01 E-value=0.0096 Score=49.41 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 407
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.95 E-value=0.0077 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999998764
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.95 E-value=0.0087 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=21.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.+.++++|..|+|||||+|.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999653
No 409
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.94 E-value=0.012 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|++.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.93 E-value=0.016 Score=48.66 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+++|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 411
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.86 E-value=0.15 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|++|+|||+|+.+++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999654
No 412
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.85 E-value=0.0053 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.0
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|++.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 413
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.85 E-value=0.012 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
-.++++|++|+|||||++.+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 414
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.84 E-value=0.012 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.+.|-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999998753
No 415
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.84 E-value=0.015 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.4
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998643
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.83 E-value=0.015 Score=48.53 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.0
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.80 E-value=0.015 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 418
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.79 E-value=0.018 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCCceEeecCCCCCCHhHHHHHHh
Q 040152 166 PNTRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 166 ~~~~~I~vvG~~~~GKSSlin~l~ 189 (293)
+.+..|+|+|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356689999999999999999886
No 419
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.78 E-value=0.016 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|+++|.+|+||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.75 E-value=0.038 Score=44.86 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..+++.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 421
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.72 E-value=0.014 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999864
No 422
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.72 E-value=0.018 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=19.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+.|+++|+|||||+|....|+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44678899999999999988863
No 423
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.71 E-value=0.014 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=19.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...+|+|++|+|||||+.++..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999854
No 424
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.70 E-value=0.014 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++++|++|+|||||++.+++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999999864
No 425
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.66 E-value=0.016 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..|+++|.+|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 426
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.66 E-value=0.018 Score=47.70 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=20.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...+++.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 427
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.60 E-value=0.02 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.4
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..+++.|+||+||||+++++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 428
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.58 E-value=0.01 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 429
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.57 E-value=0.014 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.1
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.++++|++|+|||||+..+++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 430
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.51 E-value=0.021 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=19.8
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999998864
No 431
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.46 E-value=0.022 Score=46.72 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
-.++++|++|+|||||+..+++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 432
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.017 Score=53.87 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...++|+|++|+|||||++.|+|-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 347999999999999999999764
No 433
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.40 E-value=0.023 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|++.|.+||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.39 E-value=0.022 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999875
No 435
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.34 E-value=0.046 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.5
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.30 E-value=0.021 Score=54.37 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.-.++++|++|+|||||++.++|..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999854
No 437
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.27 E-value=0.025 Score=48.08 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.8
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+..|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998864
No 438
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.25 E-value=0.021 Score=47.68 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
-.++++|++|+|||||+..+++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 37899999999999999999873
No 439
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.22 E-value=0.025 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.0
Q ss_pred CCceEeecCCCCCCHhHHHHHH
Q 040152 167 NTRTILICGYPNVGKSSFMNKI 188 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l 188 (293)
+..+|+++|.+|+|||||+.++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4679999999999999999886
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.20 E-value=0.027 Score=47.64 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred CceEeecCCCCCCHhHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~ 189 (293)
+..|++.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999886
No 441
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.17 E-value=0.038 Score=49.02 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
+.+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999877
No 442
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.16 E-value=0.026 Score=44.11 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=18.9
Q ss_pred CceEeecCCCCCCHhHHHHHHh
Q 040152 168 TRTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~ 189 (293)
..-.+|+|++|+||||++.++.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999975
No 443
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.12 E-value=0.03 Score=53.32 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=24.5
Q ss_pred cCCCCCCCCceEeecCCCCCCHhHHHHHHhcCC
Q 040152 160 RLPSIDPNTRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 160 ~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
++|... ..-.++++|++|+|||||++.|+|..
T Consensus 18 ~l~~~~-~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 18 GLPTPK-NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCCC-TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCC-CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444443 23368999999999999999999853
No 444
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.09 E-value=0.025 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.+.|-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 78999999999999999998753
No 445
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.08 E-value=0.022 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-+++++|++|+|||||++.+++..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998763
No 446
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.07 E-value=0.024 Score=53.17 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
-.++++|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 447
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.05 E-value=0.024 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred ceEeecCCCCCCHhHHHHHHh
Q 040152 169 RTILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~ 189 (293)
.-.+++|++|+|||||+++++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357799999999999999986
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.05 E-value=0.027 Score=48.91 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.5
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|+++|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.04 E-value=0.027 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.+.|-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998753
No 450
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.00 E-value=0.025 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.8
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.+.|-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999998753
No 451
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.92 E-value=0.033 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
....|+++|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999998875
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.89 E-value=0.028 Score=54.19 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.+.|-.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 378999999999999999998753
No 453
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.89 E-value=0.022 Score=43.91 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|++.|++|+|||++...+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999888654
No 454
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.82 E-value=0.56 Score=40.85 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+++.|+||+|||+++.++...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 4666777999999999999754
No 455
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.81 E-value=0.0093 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.2
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++|+|++|+|||||++++++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3678999999999999999764
No 456
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.78 E-value=0.038 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.7
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|++|+|||+++..+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999998654
No 457
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.77 E-value=0.15 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|++.|+||+|||+++.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.74 E-value=0.038 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.7
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+++|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999754
No 459
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.74 E-value=0.035 Score=45.16 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.3
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.037 Score=53.45 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=22.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.-.++++|++|+|||||++.|+|..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3479999999999999999999854
No 461
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.71 E-value=0.034 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=20.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.-+++.|+||+|||+|..++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346778899999999999998754
No 462
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.71 E-value=0.082 Score=46.54 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=30.4
Q ss_pred hccCcEEEEEEeCCCCCCCCHHHHH-HHHHHHhhccCCCcEEEEEeccCC
Q 040152 245 AHLRSAVLFFLDISGSCGYSIAQQA-ALFHSIKSLFMNKPLIIVCNKTDL 293 (293)
Q Consensus 245 ~~~~d~il~v~D~s~~~~~~~~~~~-~~l~~l~~~~~~~piivV~NK~Dl 293 (293)
....|.+++|+|+..|.. +.. .+ +++..... .++|.++|+||+||
T Consensus 84 ~anvD~v~~V~~~~~p~~-~~~-~i~r~L~~~~~--~~~~~vivlnK~DL 129 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSF-STA-LLDRFLVLVEA--NDIQPIICITKMDL 129 (307)
T ss_dssp EECCCEEEEEEESTTTTC-CHH-HHHHHHHHHHT--TTCEEEEEEECGGG
T ss_pred HHhCCEEEEEEeCCCCCC-CHH-HHHHHHHHHHH--CCCCEEEEEECCcc
Confidence 444699999999987643 322 22 33333322 57899999999996
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.69 E-value=0.031 Score=53.98 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcCC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.-.++++|++|+|||||++.++|..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3478999999999999999998854
No 464
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.67 E-value=0.37 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.1
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.|+++|+||+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999863
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.66 E-value=0.046 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=21.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+++|.||+||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998753
No 466
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.58 E-value=0.024 Score=54.37 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.+.|-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78899999999999999998753
No 467
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.58 E-value=0.03 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.+++..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 379999999999999999998764
No 468
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.57 E-value=0.039 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|+||+|||+|++++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999864
No 469
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.56 E-value=0.044 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|+|+|++|+|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 470
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.54 E-value=0.063 Score=50.07 Aligned_cols=37 Identities=16% Similarity=0.406 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCCCCCCceEeecCCCCCCHhHHHHHHhcC
Q 040152 150 YLEQIRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 150 ~l~~~~~~~~~~~~~~~~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.++.+.+.+.+. ....++++|+||+|||+++..+...
T Consensus 188 ~i~~l~~~l~r~-----~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 188 EIQRVIEVLSRR-----TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHHCS-----SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 445555555442 3457999999999999999988643
No 471
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.52 E-value=0.039 Score=45.09 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988654
No 472
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.50 E-value=0.035 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.++|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999864
No 473
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.49 E-value=0.034 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.1
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+++.|++|+||||++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 474
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.43 E-value=0.18 Score=47.31 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.9
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|+||+|||+++.++...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.38 E-value=0.032 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.+.+--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999998753
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.37 E-value=0.044 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|+++|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 477
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.36 E-value=0.039 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.5
Q ss_pred ceEeecCCCCCCHhHHHHHHhcCC
Q 040152 169 RTILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
-.++++|++|+|||||++.++|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999864
No 478
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.28 E-value=0.1 Score=45.85 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|+||+|||+++.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999754
No 479
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.28 E-value=0.034 Score=47.88 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=20.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.-.++++|++|+|||||+..+++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999998874
No 480
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.27 E-value=0.047 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.|+|+|++|||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.27 E-value=0.085 Score=46.98 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....+++.|++|+||||+++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 482
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.20 E-value=0.11 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..+++.|+||+|||+++..+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988754
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.17 E-value=0.044 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=21.0
Q ss_pred eEeecCCCCCCHhHHHHHHhcCC
Q 040152 170 TILICGYPNVGKSSFMNKITRAD 192 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~~ 192 (293)
.++++|++|+|||||++.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999854
No 484
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.16 E-value=0.032 Score=47.66 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+...|++.|.+|+||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988754
No 485
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.16 E-value=0.038 Score=47.08 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.2
Q ss_pred eEeecCCCCCCHhHHHHHHhc
Q 040152 170 TILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+++.|+||+|||+|+.++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999875
No 486
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.15 E-value=0.048 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.7
Q ss_pred eEeecCCCCCCHhHHHHHHhcC
Q 040152 170 TILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~~~ 191 (293)
.+++.|++|+||||++..+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 487
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.13 E-value=0.045 Score=48.13 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.5
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|++|+|||||++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998753
No 488
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.13 E-value=0.05 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.8
Q ss_pred ceEeecCCCCCCHhHHHHHHhc
Q 040152 169 RTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..+++.|+||+|||+++..+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 489
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.11 E-value=0.044 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.0
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...+++.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999998764
No 490
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.10 E-value=0.034 Score=48.53 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=17.1
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
.+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.08 E-value=0.049 Score=45.79 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.2
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|++.|.+|+||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.05 E-value=0.11 Score=45.63 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhc
Q 040152 168 TRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
...+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988864
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.97 E-value=0.047 Score=46.70 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=21.6
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....+++.|+||+|||+++.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999998764
No 494
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.89 E-value=0.065 Score=47.22 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
..|+|+|++|||||||...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999999999743
No 495
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.88 E-value=0.052 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred ceEeecCCCCCCHhHHHHHHhcC
Q 040152 169 RTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 169 ~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
+.|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36999999999999999988753
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.87 E-value=0.14 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.4
Q ss_pred CCceEeecCCCCCCHhHHHHHHhcC
Q 040152 167 NTRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
....+++.|+||+|||++..++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.052 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.7
Q ss_pred EeecCCCCCCHhHHHHHHhcCCc
Q 040152 171 ILICGYPNVGKSSFMNKITRADV 193 (293)
Q Consensus 171 I~vvG~~~~GKSSlin~l~~~~~ 193 (293)
++++|++|+|||||++.++|...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999998643
No 498
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.80 E-value=0.15 Score=47.16 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.3
Q ss_pred CceEeecCCCCCCHhHHHHHHhcC
Q 040152 168 TRTILICGYPNVGKSSFMNKITRA 191 (293)
Q Consensus 168 ~~~I~vvG~~~~GKSSlin~l~~~ 191 (293)
...|++.|+||+|||+|+.++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 499
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.80 E-value=0.049 Score=45.42 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=17.8
Q ss_pred eEeecCCCCCCHhHHHHHHh
Q 040152 170 TILICGYPNVGKSSFMNKIT 189 (293)
Q Consensus 170 ~I~vvG~~~~GKSSlin~l~ 189 (293)
.++++|+||+|||||+..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999977764
No 500
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.80 E-value=0.062 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.3
Q ss_pred CCceEeecCCCCCCHhHHHHHHhc
Q 040152 167 NTRTILICGYPNVGKSSFMNKITR 190 (293)
Q Consensus 167 ~~~~I~vvG~~~~GKSSlin~l~~ 190 (293)
..+.|+++|++|+||||+...|++
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999987754
Done!