BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040154
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 248/494 (50%), Gaps = 51/494 (10%)
Query: 21 SKLIYLDLSSNQLSGEIPA--SIGNLGSLKELDLSTNELS--GRLPSSIGNLSSLEKLDL 76
+ L LDLS N LSG + S+G+ LK L++S+N L G++ + L+SLE LDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 77 SLNVFSGDMPAVIG-----NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG 131
S N SG V+G LK L +S S D+ + +LE LD+S N S
Sbjct: 156 SANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST 211
Query: 132 ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQL 191
+P F G+ +L+ LD+SGN+LSGDFS + T LK L++ S F+G +PP L L
Sbjct: 212 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 268
Query: 192 QWLGLASNNFSGNLPSTI-GNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250
Q+L LA N F+G +P + G +L LD+S +F G +P + + L L LS N+FS
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 251 GGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTE--FPNFLK 308
G + +D L+ ++ L+VL LS N S + + S T+ L S N + PN +
Sbjct: 329 GELPMDT-LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 309 NQKN-VAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDF 367
N KN + L L +N GKIP L C + SL
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSN----------------------C---SELVSLHL 422
Query: 368 SSNFLQGPLPI---PPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHC 424
S N+L G +P + R+ + N L G I + + LE L L N+L+G +P
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 425 LGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLD 484
L N +N L+ ++L +N+ G IP+ +E L ++ LS+N G IP L +C +L +LD
Sbjct: 483 LSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 485 LGNNQISDTFPSWL 498
L N + T P+ +
Sbjct: 542 LNTNLFNGTIPAAM 555
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 184/569 (32%), Positives = 265/569 (46%), Gaps = 58/569 (10%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSL 71
GIP LG+ S L +LD+S N+LSG+ +I LK L++S+N+ G +P L SL
Sbjct: 212 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 268
Query: 72 EKLDLSLNVFSGDMPAVI-GNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS 130
+ L L+ N F+G++P + G +L L LS +F +P F G+ LE L LS N S
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 131 GELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNLT-SLKRLSLESCSFLGKLPPSVGNL 188
GELP D + L+ LDLS N+ SG+ S NL+ SL L L S +F G + P NL
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NL 385
Query: 189 TQ-----LQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLD 243
Q LQ L L +N F+G +P T+ N L +L +S SG IPSSL +L++L L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 244 LSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEF 303
L N G E+ L+ +K LE L L N L+ E
Sbjct: 446 LWLNMLEG--EIPQELMYVKTLETLILDFNDLT------------------------GEI 479
Query: 304 PNFLKNQKNVAVLDLSSNRIHGKIPKWL--LEQXXXXXXXXXXXXTGLDQYPVVCP---W 358
P+ L N N+ + LS+NR+ G+IPKW+ LE + C W
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 359 GNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRN--N 416
LD ++N G +P + I+ N + G +I N + + N
Sbjct: 540 ------LDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 417 LSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVN 476
G+ L +S + N+ + G TF + +D+S N+L G IP+ + +
Sbjct: 593 FQGIRSEQLNRLSTR-NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 477 CSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDIS 536
L L+LG+N IS + P +G L LNIL L SNK G R P L ID+S
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEIDLS 709
Query: 537 SNRFIGKLPSK-YFQCWNAMQVVNTSGLV 564
+N G +P F+ + + +N GL
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 158/342 (46%), Gaps = 48/342 (14%)
Query: 10 TGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLS 69
TG IP +L N S+L+ L LS N LSG IP+S+G+L L++L L N L G +P + +
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 70 SLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI 129
+LE L L N +G++P+ + N ++L + LS + ++P +IG L +L IL LS N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 130 SGELPDFFGNLPSLEELDLSGNQLSGDFSVS--------TGNLTSLKRLSLESCSFLGKL 181
SG +P G+ SL LDL+ N +G + N + KR + K
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 182 PPSVGNLTQLQWL--------------GLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227
GNL + Q + + S + G+ T N S+ LD+S SG
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 228 PIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTS 287
IP + ++ L L+L N SG + +V L+ L +L LSSN+L S +
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVG--DLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 288 QKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPK 329
LTE +DLS+N + G IP+
Sbjct: 702 M-----------LTE-------------IDLSNNNLSGPIPE 719
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 148/519 (28%), Positives = 210/519 (40%), Gaps = 134/519 (25%)
Query: 124 LSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSV--STGNLTSLKRLSLESCS--FLG 179
LS + I+G + F + SL LDLS N LSG + S G+ + LK L++ S + F G
Sbjct: 81 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 180 KLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRS-----LETLDISSCNFSGPIPSSLR 234
K+ + L L+ L L++N+ SG + +G + S L+ L IS SG + +
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 235 NLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVH-TKATSSTTSQKFGTV 293
L LD+S N+FS G+ FL L+ L +S N+LS ++A S+ T K +
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 294 GLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQ-- 351
S N P K++ L L+ N+ G+IP +L TGLD
Sbjct: 252 ---SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL--------SGACDTLTGLDLSG 300
Query: 352 ---YPVVCPW---GNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLN 405
Y V P+ + SL SSN G LP+ + +
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT--------------------LLKMR 340
Query: 406 FLEGLDLSRNNLSGLLPHCLGNIS--------------------------NHLSILNLQH 439
L+ LDLS N SG LP L N+S N L L LQ+
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 440 NKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRS-------------------------- 473
N F G IP T L + LS N L G IP S
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 474 ----------------------LVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511
L NC+NL ++ L NN+++ P W+G L NL IL L +
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQ 550
N F G I DC L +D+++N F G +P+ F+
Sbjct: 521 NSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFK 557
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIP 38
K G IP ++ L+ L +DLS+N LSG IP
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 248/494 (50%), Gaps = 51/494 (10%)
Query: 21 SKLIYLDLSSNQLSGEIPA--SIGNLGSLKELDLSTNELS--GRLPSSIGNLSSLEKLDL 76
+ L LDLS N LSG + S+G+ LK L++S+N L G++ + L+SLE LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 77 SLNVFSGDMPAVIG-----NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG 131
S N SG V+G LK L +S S D+ + +LE LD+S N S
Sbjct: 159 SANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST 214
Query: 132 ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQL 191
+P F G+ +L+ LD+SGN+LSGDFS + T LK L++ S F+G +PP L L
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271
Query: 192 QWLGLASNNFSGNLPSTI-GNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250
Q+L LA N F+G +P + G +L LD+S +F G +P + + L L LS N+FS
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 251 GGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTE--FPNFLK 308
G + +D L+ ++ L+VL LS N S + + S T+ L S N + PN +
Sbjct: 332 GELPMDT-LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 309 NQKN-VAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDF 367
N KN + L L +N GKIP L C + SL
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSN----------------------C---SELVSLHL 425
Query: 368 SSNFLQGPLPI---PPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHC 424
S N+L G +P + R+ + N L G I + + LE L L N+L+G +P
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 425 LGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLD 484
L N +N L+ ++L +N+ G IP+ +E L ++ LS+N G IP L +C +L +LD
Sbjct: 486 LSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 485 LGNNQISDTFPSWL 498
L N + T P+ +
Sbjct: 545 LNTNLFNGTIPAAM 558
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 184/569 (32%), Positives = 265/569 (46%), Gaps = 58/569 (10%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSL 71
GIP LG+ S L +LD+S N+LSG+ +I LK L++S+N+ G +P L SL
Sbjct: 215 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271
Query: 72 EKLDLSLNVFSGDMPAVI-GNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS 130
+ L L+ N F+G++P + G +L L LS +F +P F G+ LE L LS N S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 131 GELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNLT-SLKRLSLESCSFLGKLPPSVGNL 188
GELP D + L+ LDLS N+ SG+ S NL+ SL L L S +F G + P NL
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NL 388
Query: 189 TQ-----LQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLD 243
Q LQ L L +N F+G +P T+ N L +L +S SG IPSSL +L++L L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 244 LSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEF 303
L N G E+ L+ +K LE L L N L+ E
Sbjct: 449 LWLNMLEG--EIPQELMYVKTLETLILDFNDLT------------------------GEI 482
Query: 304 PNFLKNQKNVAVLDLSSNRIHGKIPKWL--LEQXXXXXXXXXXXXTGLDQYPVVCP---W 358
P+ L N N+ + LS+NR+ G+IPKW+ LE + C W
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 359 GNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRN--N 416
LD ++N G +P + I+ N + G +I N + + N
Sbjct: 543 ------LDLNTNLFNGTIPAAMFKQSGK-IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 417 LSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVN 476
G+ L +S + N+ + G TF + +D+S N+L G IP+ + +
Sbjct: 596 FQGIRSEQLNRLSTR-NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 477 CSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDIS 536
L L+LG+N IS + P +G L LNIL L SNK G R P L ID+S
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEIDLS 712
Query: 537 SNRFIGKLPSK-YFQCWNAMQVVNTSGLV 564
+N G +P F+ + + +N GL
Sbjct: 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 158/342 (46%), Gaps = 48/342 (14%)
Query: 10 TGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLS 69
TG IP +L N S+L+ L LS N LSG IP+S+G+L L++L L N L G +P + +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 70 SLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI 129
+LE L L N +G++P+ + N ++L + LS + ++P +IG L +L IL LS N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 130 SGELPDFFGNLPSLEELDLSGNQLSGDFSVS--------TGNLTSLKRLSLESCSFLGKL 181
SG +P G+ SL LDL+ N +G + N + KR + K
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 182 PPSVGNLTQLQWL--------------GLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227
GNL + Q + + S + G+ T N S+ LD+S SG
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 228 PIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTS 287
IP + ++ L L+L N SG + +V L+ L +L LSSN+L S +
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVG--DLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 288 QKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPK 329
LTE +DLS+N + G IP+
Sbjct: 705 M-----------LTE-------------IDLSNNNLSGPIPE 722
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 145/519 (27%), Positives = 213/519 (41%), Gaps = 134/519 (25%)
Query: 124 LSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSV--STGNLTSLKRLSLESCS--FLG 179
LS + I+G + F + SL LDLS N LSG + S G+ + LK L++ S + F G
Sbjct: 84 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 180 KLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRS-----LETLDISSCNFSGPIPSSLR 234
K+ + L L+ L L++N+ SG + +G + S L+ L IS SG + +
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 235 NLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVH-TKATSSTTSQKFGTV 293
L LD+S N+FS G+ FL L+ L +S N+LS ++A S+ T K +
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 294 GLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQ-- 351
S N P K++ L L+ N+ G+IP +L TGLD
Sbjct: 255 ---SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL--------SGACDTLTGLDLSG 303
Query: 352 ---YPVVCPW---GNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLN 405
Y V P+ + SL SSN G LP+ + +
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT--------------------LLKMR 343
Query: 406 FLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF----------------------- 442
L+ LDLS N SG LP L N+S L L+L N F
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 443 ---------------------------FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLV 475
GTIP + + LR + L N+L+G IP+ L+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 476 ------------------------NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511
NC+NL ++ L NN+++ P W+G L NL IL L +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQ 550
N F G I DC L +D+++N F G +P+ F+
Sbjct: 524 NSFSGNIPAELGDC--RSLIWLDLNTNLFNGTIPAAMFK 560
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIP 38
K G IP ++ L+ L +DLS+N LSG IP
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 6/224 (2%)
Query: 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSS 70
G IP ++ L++L YL ++ +SG IP + + +L LD S N LSG LP SI +L +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 71 LEKLDLSLNVFSGDMPAVIGNLSSL-KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI 129
L + N SG +P G+ S L ++ +S+ + +P NL +L +DLS N +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 130 SGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLT 189
G+ FG+ + +++ L+ N L+ D G +L L L + G LP + L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 190 QLQWLGLASNNFSGNLPSTIGNLRSLETLDISS--CNFSGPIPS 231
L L ++ NN G +P GNL+ + ++ C P+P+
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 105/246 (42%), Gaps = 56/246 (22%)
Query: 13 IPSSLGNLSKLIYLDLSS-NQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSL 71
IPSSL NL L +L + N L G IP +I L L L ++ +SG +P + + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 72 EKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG 131
LD S N SG +P I S LP +G + GN+ISG
Sbjct: 128 VTLDFSYNALSGTLPPSI-----------------SSLPNLVG-------ITFDGNRISG 163
Query: 132 ELPDFFGNL-------------------PSLEEL-----DLSGNQLSGDFSVSTGNLTSL 167
+PD +G+ P+ L DLS N L GD SV G+ +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 168 KRLSLESCSF---LGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCN 224
+++ L S LGK VG L L L +N G LP + L+ L +L++S N
Sbjct: 224 QKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 225 FSGPIP 230
G IP
Sbjct: 280 LCGEIP 285
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
Query: 61 LPSSIGNLSSLEKLDLS-LNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSL 119
+PSS+ NL L L + +N G +P I L+ L L ++ TN S +P F+ + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 120 EILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL-KRLSLESCSFL 178
LD S N +SG LP +LP+L + GN++SG S G+ + L +++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 179 GKLPPSVGNL-----------------------TQLQWLGLASNNFSGNLPSTIGNLRSL 215
GK+PP+ NL Q + LA N+ + +L +G ++L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 216 ETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSG 251
LD+ + G +P L L L L++S N+ G
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 26/216 (12%)
Query: 143 LEELDLSGNQLSGDFSV--STGNLTSLKRLSLESCS-FLGKLPPSVGNLTQLQWLGLASN 199
+ LDLSG L + + S NL L L + + +G +PP++ LTQL +L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 200 NFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFL 259
N SG +P + +++L TLD S SG +P S+ +L L + N SG + D +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYG 170
Query: 260 ISLKNLEVLYLSSNRLSVHTKATSSTTSQKF-----------GTVGLRSCNLTEFPNFLK 308
K + +S NRL+ T + + F +V S T+ + K
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 309 N-----------QKNVAVLDLSSNRIHGKIPKWLLE 333
N KN+ LDL +NRI+G +P+ L +
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 389 SNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQ 448
S N+L G + P I +L L G+ N +SG +P G+ S + + + N+ G IP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 449 TFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILI 508
TF + L +DLS N+L+G + N + + L N ++ +G NLN L
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 509 LQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP 545
L++N+ +G + + T F L +++S N G++P
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 113/291 (38%), Gaps = 95/291 (32%)
Query: 205 LPSTIGNLRSLETLDISSCN-FSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLK 263
+PS++ NL L L I N GPIP ++ LTQL L ++ + SG + FL +K
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--DFLSQIK 125
Query: 264 NLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRI 323
L L S N LS GT+ P + + N+ + NRI
Sbjct: 126 TLVTLDFSYNALS--------------GTL----------PPSISSLPNLVGITFDGNRI 161
Query: 324 HGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRT 383
G IP D Y FS F+S
Sbjct: 162 SGAIP---------------------DSY--------GSFSKLFTS-------------- 178
Query: 384 RNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGN---------------- 427
IS N L G I P NLN L +DLSRN L G G+
Sbjct: 179 --MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 428 ------ISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPR 472
+S +L+ L+L++N+ +GT+PQ +++L +++S N L G IP+
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 87/221 (39%), Gaps = 36/221 (16%)
Query: 361 RPFSLDFSSNFLQGPLPIP------PPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSR 414
R +LD S L P PIP P Y+ N+L+G I P I L L L ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 415 NNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQT------FLGVEW------------- 455
N+SG +P L I L L+ +N GT+P + +G+ +
Sbjct: 111 TNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 456 ------LRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILIL 509
+ +S N L G+IP + N NL F+DL N + G+ N + L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 510 QSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQ 550
N + + G L +D+ +NR G LP Q
Sbjct: 229 AKNSLAFDLGKVGLS---KNLNGLDLRNNRIYGTLPQGLTQ 266
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 97/208 (46%), Gaps = 13/208 (6%)
Query: 14 PSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEK 73
P LS L + + + L E+P + L+ L L+ N L LP+SI +L+ L +
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRE 154
Query: 74 LDLSLNVFSGDMPAVIGN---------LSSLKALVLSKTNFSSDLPAFIGNLPSLEILDL 124
L + ++P + + L +L++L L T S LPA I NL +L+ L +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKI 213
Query: 125 SGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPS 184
+ +S P +LP LEELDL G ++ G LKRL L+ CS L LP
Sbjct: 214 RNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 185 VGNLTQLQWLGLASNNFSGNLPSTIGNL 212
+ LTQL+ L L LPS I L
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 37 IPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96
+PASI NL +LK L + + LS L +I +L LE+LDL + P + G + LK
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 97 ALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPS 142
L+L + LP I L LE LDL G LP LP+
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 142/275 (51%), Gaps = 24/275 (8%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+KL+ + +++NQ++ P + NL +L L L N+++ P + NL++L +L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
S N S D+ A+ G L+SL+ L S +N +DL + NL +LE LD+S NK+S
Sbjct: 137 SSNTIS-DISALSG-LTSLQQLSFS-SNQVTDLKP-LANLTTLERLDISSNKVSD--ISV 190
Query: 137 FGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGL 196
L +LE L + NQ+S + G LT+L LSL K ++ +LT L L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDL 246
Query: 197 ASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256
A+N S P + L L L + + S P L LT L+ L+L+ N D
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-----D 297
Query: 257 VFLIS-LKNLEVLYLSSNRLSVHTKATSSTTSQKF 290
+ IS LKNL L L N +S + +S T Q+
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 108/399 (27%), Positives = 159/399 (39%), Gaps = 100/399 (25%)
Query: 100 LSKTNFSSDLPAFI---GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
L++ NFS++ I NL L + ++ N+I+ P NL +L L L NQ++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 122
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLE 216
+ NLT+L RL L S + ++ LT LQ L +SN + P + NL +LE
Sbjct: 123 DPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLE 176
Query: 217 TLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276
LDISS S S L LT L L + N S L + L NL+ L L+ N+L
Sbjct: 177 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQL- 229
Query: 277 VHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXX 336
+ GT+ NLT+ LDL++N+I P
Sbjct: 230 -----------KDIGTLA-SLTNLTD-------------LDLANNQISNLAP-------- 256
Query: 337 XXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGG 396
+GL + L +N + P+ L N + +
Sbjct: 257 ---------LSGLTKLT----------ELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 397 IAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWL 456
I+P I NL L L L NN+S + P S+ LQ F+
Sbjct: 298 ISP-ISNLKNLTYLTLYFNNISDISPVS--------SLTKLQRLFFYNN----------- 337
Query: 457 RMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP 495
++ D+S SL N +N+ +L G+NQISD P
Sbjct: 338 KVSDVS----------SLANLTNINWLSAGHNQISDLTP 366
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
+L +L+ L LDL++NQ+S P S L L EL L N++S P + L++L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPD 135
L+ N P I NL +L L L N S P + +L L+ L NK+S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 343
Query: 136 FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK---------LPPSVG 186
NL ++ L NQ+S D + NLT + +L L ++ +P +V
Sbjct: 344 SLANLTNINWLSAGHNQIS-DLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 401
Query: 187 NLT 189
N+T
Sbjct: 402 NVT 404
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ NL LE LD+S N +S + L ++N S++ +N+ P LG+ + +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI-ATNNQISDITP---LGI-LTNLDE 221
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
LS N Q + +L + +NL LDL NNQIS+ P L L L L L +N+ I
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMID--LSDNLLQGRIPRSLVNCSNLEFLDLGN 487
N+L+ +N +N+ P L +++D +++N + P L N +NL L L N
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 488 NQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP 545
NQI+D P L L NLN L L SN I G L+ + SSN+ P
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTISDI----SALSGLTSLQQLSFSSNQVTDLKP 168
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 142/275 (51%), Gaps = 24/275 (8%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+KL+ + +++NQ++ P + NL +L L L N+++ P + NL++L +L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
S N S D+ A+ G L+SL+ L S +N +DL + NL +LE LD+S NK+S
Sbjct: 137 SSNTIS-DISALSG-LTSLQQLSFS-SNQVTDLKP-LANLTTLERLDISSNKVSD--ISV 190
Query: 137 FGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGL 196
L +LE L + NQ+S + G LT+L LSL K ++ +LT L L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDL 246
Query: 197 ASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256
A+N S P + L L L + + S P L LT L+ L+L+ N D
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-----D 297
Query: 257 VFLIS-LKNLEVLYLSSNRLSVHTKATSSTTSQKF 290
+ IS LKNL L L N +S + +S T Q+
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
+L +L+ L LDL++NQ+S P S L L EL L N++S P + L++L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPD 135
L+ N P I NL +L L L N S P + +L L+ L S NK+S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VS 343
Query: 136 FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK---------LPPSVG 186
NL ++ L NQ+S D + NLT + +L L ++ +P +V
Sbjct: 344 SLANLTNINWLSAGHNQIS-DLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 401
Query: 187 NLT 189
N+T
Sbjct: 402 NVT 404
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ NL LE LD+S N +S + L ++N S++ +N+ P LG+ + +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI-ATNNQISDITP---LGI-LTNLDE 221
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
LS N Q + +L + +NL LDL NNQIS+ P L L L L L +N+ I
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMID--LSDNLLQGRIPRSLVNCSNLEFLDLGN 487
N+L+ +N +N+ P L +++D +++N + P L N +NL L L N
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 488 NQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP 545
NQI+D P L L NLN L L SN I G L+ + SSN+ P
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTISDI----SALSGLTSLQQLSFSSNQVTDLKP 168
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 394 IGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGV 453
I I+P + L L L+L+ N L + P + N+ N L+ L L N P + L
Sbjct: 273 ISNISP-LAGLTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNISDISPVSSL-- 326
Query: 454 EWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP 495
L+ + S+N + SL N +N+ +L G+NQISD P
Sbjct: 327 TKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 142/275 (51%), Gaps = 24/275 (8%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+KL+ + +++NQ++ P + NL +L L L N+++ P + NL++L +L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
S N S D+ A+ G L+SL+ L S +N +DL + NL +LE LD+S NK+S
Sbjct: 137 SSNTIS-DISALSG-LTSLQQLNFS-SNQVTDLKP-LANLTTLERLDISSNKVSD--ISV 190
Query: 137 FGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGL 196
L +LE L + NQ+S + G LT+L LSL K ++ +LT L L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDL 246
Query: 197 ASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256
A+N S P + L L L + + S P L LT L+ L+L+ N D
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-----D 297
Query: 257 VFLIS-LKNLEVLYLSSNRLSVHTKATSSTTSQKF 290
+ IS LKNL L L N +S + +S T Q+
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 108/399 (27%), Positives = 159/399 (39%), Gaps = 100/399 (25%)
Query: 100 LSKTNFSSDLPAFI---GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
L++ NFS++ I NL L + ++ N+I+ P NL +L L L NQ++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 122
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLE 216
+ NLT+L RL L S + ++ LT LQ L +SN + P + NL +LE
Sbjct: 123 DPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLE 176
Query: 217 TLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276
LDISS S S L LT L L + N S L + L NL+ L L+ N+L
Sbjct: 177 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQL- 229
Query: 277 VHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXX 336
+ GT+ NLT+ LDL++N+I P
Sbjct: 230 -----------KDIGTLA-SLTNLTD-------------LDLANNQISNLAP-------- 256
Query: 337 XXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGG 396
+GL + L +N + P+ L N + +
Sbjct: 257 ---------LSGLTKLT----------ELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 397 IAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWL 456
I+P I NL L L L NN+S + P S+ LQ F+
Sbjct: 298 ISP-ISNLKNLTYLTLYFNNISDISPVS--------SLTKLQRLFFYNN----------- 337
Query: 457 RMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP 495
++ D+S SL N +N+ +L G+NQISD P
Sbjct: 338 KVSDVS----------SLANLTNINWLSAGHNQISDLTP 366
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
+L +L+ L LDL++NQ+S P S L L EL L N++S P + L++L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPD 135
L+ N P I NL +L L L N S P + +L L+ L NK+S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 343
Query: 136 FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK---------LPPSVG 186
NL ++ L NQ+S D + NLT + +L L ++ +P +V
Sbjct: 344 SLANLTNINWLSAGHNQIS-DLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 401
Query: 187 NLT 189
N+T
Sbjct: 402 NVT 404
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ NL LE LD+S N +S + L ++N S++ +N+ P LG+ + +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI-ATNNQISDITP---LGI-LTNLDE 221
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
LS N Q + +L + +NL LDL NNQIS+ P L L L L L +N+ I
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMID--LSDNLLQGRIPRSLVNCSNLEFLDLGN 487
N+L+ +N +N+ P L +++D +++N + P L N +NL L L N
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITP--LANLTNLTGLTLFN 116
Query: 488 NQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP 545
NQI+D P L L NLN L L SN I G L+ ++ SSN+ P
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTISDI----SALSGLTSLQQLNFSSNQVTDLKP 168
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 141/275 (51%), Gaps = 25/275 (9%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+KL+ + +++NQ++ P + NL +L L L N+++ P + NL++L +L+L
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
S N S D+ A+ G L+SL+ L S N +DL + NL +LE LD+S NK+S
Sbjct: 142 SSNTIS-DISALSG-LTSLQQL--SFGNQVTDLKP-LANLTTLERLDISSNKVSD--ISV 194
Query: 137 FGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGL 196
L +LE L + NQ+S + G LT+L LSL K ++ +LT L L L
Sbjct: 195 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDL 250
Query: 197 ASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256
A+N S P + L L L + + S P L LT L+ L+L+ N D
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-----D 301
Query: 257 VFLIS-LKNLEVLYLSSNRLSVHTKATSSTTSQKF 290
+ IS LKNL L L N +S + +S T Q+
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
+L +L+ L LDL++NQ+S P S L L EL L N++S P + L++L L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPD 135
L+ N P I NL +L L L N S P + +L L+ L NK+S
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 347
Query: 136 FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSF 177
NL ++ L NQ+S D + NLT + +L L ++
Sbjct: 348 SLANLTNINWLSAGHNQIS-DLT-PLANLTRITQLGLNDQAW 387
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 356 CPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRN 415
+ N ++FS+N L P+ ++ NN+ I I P + NL L GL L N
Sbjct: 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122
Query: 416 NLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLV 475
++ + P L N++N L+ L L N G+ L+ + + Q + L
Sbjct: 123 QITDIDP--LKNLTN-LNRLELSSNTISDI--SALSGLTSLQQLSFGN---QVTDLKPLA 174
Query: 476 NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
N + LE LD+ +N++SD S L L NL LI +N+ I
Sbjct: 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 214
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 157/399 (39%), Gaps = 101/399 (25%)
Query: 100 LSKTNFSSDLPAFI---GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
L++ NFS++ I NL L + ++ N+I+ P NL +L L L NQ++
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 127
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLE 216
+ NLT+L RL L S + ++ LT LQ L N + P + NL +LE
Sbjct: 128 DPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLE 180
Query: 217 TLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276
LDISS S S L LT L L + N S L + L NL+ L L+ N+L
Sbjct: 181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQL- 233
Query: 277 VHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXX 336
+ GT+ NLT+ LDL++N+I P
Sbjct: 234 -----------KDIGTLA-SLTNLTD-------------LDLANNQISNLAP-------- 260
Query: 337 XXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGG 396
+GL + L +N + P+ L N + +
Sbjct: 261 ---------LSGLTKLT----------ELKLGANQISNISPLAGLTALTNLELNENQLED 301
Query: 397 IAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWL 456
I+P I NL L L L NN+S + P S+ LQ F+
Sbjct: 302 ISP-ISNLKNLTYLTLYFNNISDISPVS--------SLTKLQRLFFYNN----------- 341
Query: 457 RMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP 495
++ D+S SL N +N+ +L G+NQISD P
Sbjct: 342 KVSDVS----------SLANLTNINWLSAGHNQISDLTP 370
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ NL LE LD+S N +S + L ++N S++ +N+ P LG+ + +
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI-ATNNQISDITP---LGI-LTNLDE 225
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
LS N Q + +L + +NL LDL NNQIS+ P L L L L L +N+ I
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQ 489
N+L+ +N +N+ P L +++D+ N Q L N +NL L L NNQ
Sbjct: 68 NNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123
Query: 490 ISDTFPSWLGALPNLNILILQSNKFHGIIREPG-------------TD----CGFPKLRI 532
I+D P L L NLN L L SN I G TD L
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 181
Query: 533 IDISSNRF 540
+DISSN+
Sbjct: 182 LDISSNKV 189
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 141/275 (51%), Gaps = 25/275 (9%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+KL+ + +++NQ++ P + NL +L L L N+++ P + NL++L +L+L
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 140
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
S N S D+ A+ G L+SL+ L S N +DL + NL +LE LD+S NK+S
Sbjct: 141 SSNTIS-DISALSG-LTSLQQL--SFGNQVTDLKP-LANLTTLERLDISSNKVSD--ISV 193
Query: 137 FGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGL 196
L +LE L + NQ+S + G LT+L LSL K ++ +LT L L L
Sbjct: 194 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDL 249
Query: 197 ASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256
A+N S P + L L L + + S P L LT L+ L+L+ N D
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-----D 300
Query: 257 VFLIS-LKNLEVLYLSSNRLSVHTKATSSTTSQKF 290
+ IS LKNL L L N +S + +S T Q+
Sbjct: 301 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 335
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 12/162 (7%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
+L +L+ L LDL++NQ+S P S L L EL L N++S P + L++L L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPD 135
L+ N P I NL +L L L N S P + +L L+ L + NK+S
Sbjct: 293 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VS 346
Query: 136 FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSF 177
NL ++ L NQ+S D + NLT + +L L ++
Sbjct: 347 SLANLTNINWLSAGHNQIS-DLT-PLANLTRITQLGLNDQAW 386
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 356 CPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRN 415
+ N ++FS+N L P+ ++ NN+ I I P + NL L GL L N
Sbjct: 63 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 121
Query: 416 NLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLV 475
++ + P L N++N L+ L L N G+ L+ + + Q + L
Sbjct: 122 QITDIDP--LKNLTN-LNRLELSSNTISDI--SALSGLTSLQQLSFGN---QVTDLKPLA 173
Query: 476 NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
N + LE LD+ +N++SD S L L NL LI +N+ I
Sbjct: 174 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 213
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ NL LE LD+S N +S + L ++N S++ +N+ P LG+ + +
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI-ATNNQISDITP---LGI-LTNLDE 224
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
LS N Q + +L + +NL LDL NNQIS+ P L L L L L +N+ I
Sbjct: 225 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 279
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQ 489
N+L+ +N +N+ P L +++D+ N Q L N +NL L L NNQ
Sbjct: 67 NNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 490 ISDTFPSWLGALPNLNILILQSNKFHGIIREPG-------------TD----CGFPKLRI 532
I+D P L L NLN L L SN I G TD L
Sbjct: 123 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 180
Query: 533 IDISSNRF 540
+DISSN+
Sbjct: 181 LDISSNKV 188
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 137/332 (41%), Gaps = 49/332 (14%)
Query: 185 VGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETL-DISSCNFSGPIPSSLRNLTQLSCLD 243
+ NLTQ+ NFS N + I L++L L DI N + L NLT L+ L
Sbjct: 66 LNNLTQI--------NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 117
Query: 244 LSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEF 303
L N + ++D L +L NL L LSSN +S A S TS + + G + +L
Sbjct: 118 LFNNQIT---DIDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPL 172
Query: 304 PNFLKNQKNVAVLDLSSNRIHG--------KIPKWLLEQXXXXXXXXXXXXTGLDQYPVV 355
N ++ LD+SSN++ + + T LD+ +
Sbjct: 173 ANLTTLER----LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL- 227
Query: 356 CPWGNRP------------FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICN 403
GN+ LD ++N + P+ L + I I+P +
Sbjct: 228 --NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAG 284
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L L+L+ N L + P + N+ N L+ L L N P + L L+ + ++
Sbjct: 285 LTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNISDISPVSSL--TKLQRLFFAN 339
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP 495
N + SL N +N+ +L G+NQISD P
Sbjct: 340 NKVSDV--SSLANLTNINWLSAGHNQISDLTP 369
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 140/277 (50%), Gaps = 29/277 (10%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+KL+ + +++NQ++ P + NL +L L L N+++ P + NL++L +L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAF--IGNLPSLEILDLSGNKISGELP 134
S N S D+ A+ G L+SL+ L NF + + + NL +LE LD+S NK+S
Sbjct: 137 SSNTIS-DISALSG-LTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSD--I 187
Query: 135 DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWL 194
L +LE L + NQ+S + G LT+L LSL K ++ +LT L L
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDL 243
Query: 195 GLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGME 254
LA+N S P + L L L + + S P L LT L+ L+L+ N
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE---- 295
Query: 255 LDVFLIS-LKNLEVLYLSSNRLSVHTKATSSTTSQKF 290
D+ IS LKNL L L N +S + +S T Q+
Sbjct: 296 -DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
+L +L+ L LDL++NQ+S P S L L EL L N++S P + L++L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPD 135
L+ N P I NL +L L L N S P + +L L+ L NK+S
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 342
Query: 136 FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK---------LPPSVG 186
NL ++ L NQ+S D + NLT + +L L ++ +P +V
Sbjct: 343 SLANLTNINWLSAGHNQIS-DLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 400
Query: 187 NLT 189
N+T
Sbjct: 401 NVT 403
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 356 CPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRN 415
+ N ++FS+N L P+ ++ NN+ I I P + NL L GL L N
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 117
Query: 416 NLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLV 475
++ + P L N++N L+ L L N G+ L+ ++ + Q + L
Sbjct: 118 QITDIDP--LKNLTN-LNRLELSSNTISDI--SALSGLTSLQQLNFGN---QVTDLKPLA 169
Query: 476 NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
N + LE LD+ +N++SD S L L NL LI +N+ I
Sbjct: 170 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 157/399 (39%), Gaps = 101/399 (25%)
Query: 100 LSKTNFSSDLPAFI---GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
L++ NFS++ I NL L + ++ N+I+ P NL +L L L NQ++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 122
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLE 216
+ NLT+L RL L S + ++ LT LQ L N + P + NL +LE
Sbjct: 123 DPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLE 175
Query: 217 TLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276
LDISS S S L LT L L + N S L + L NL+ L L+ N+L
Sbjct: 176 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQL- 228
Query: 277 VHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXX 336
+ GT+ NLT+ LDL++N+I P
Sbjct: 229 -----------KDIGTLA-SLTNLTD-------------LDLANNQISNLAP-------- 255
Query: 337 XXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGG 396
+GL + L +N + P+ L N + +
Sbjct: 256 ---------LSGLTKLT----------ELKLGANQISNISPLAGLTALTNLELNENQLED 296
Query: 397 IAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWL 456
I+P I NL L L L NN+S + P S+ LQ F+
Sbjct: 297 ISP-ISNLKNLTYLTLYFNNISDISPVS--------SLTKLQRLFFYNN----------- 336
Query: 457 RMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP 495
++ D+S SL N +N+ +L G+NQISD P
Sbjct: 337 KVSDVS----------SLANLTNINWLSAGHNQISDLTP 365
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ NL LE LD+S N +S + L ++N S++ +N+ P LG+ + +
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI-ATNNQISDITP---LGI-LTNLDE 220
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
LS N Q + +L + +NL LDL NNQIS+ P L L L L L +N+ I
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 275
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQ 489
N+L+ +N +N+ P L +++D+ N Q L N +NL L L NNQ
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 490 ISDTFPSWLGALPNLNILILQSNKFHGIIREPG-------------TD----CGFPKLRI 532
I+D P L L NLN L L SN I G TD L
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLER 176
Query: 533 IDISSNRF 540
+DISSN+
Sbjct: 177 LDISSNKV 184
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 140/277 (50%), Gaps = 29/277 (10%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+KL+ + +++NQ++ P + NL +L L L N+++ P + NL++L +L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAF--IGNLPSLEILDLSGNKISGELP 134
S N S D+ A+ G L+SL+ L NF + + + NL +LE LD+S NK+S
Sbjct: 137 SSNTIS-DISALSG-LTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSD--I 187
Query: 135 DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWL 194
L +LE L + NQ+S + G LT+L LSL K ++ +LT L L
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDL 243
Query: 195 GLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGME 254
LA+N S P + L L L + + S P L LT L+ L+L+ N
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE---- 295
Query: 255 LDVFLIS-LKNLEVLYLSSNRLSVHTKATSSTTSQKF 290
D+ IS LKNL L L N +S + +S T Q+
Sbjct: 296 -DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
+L +L+ L LDL++NQ+S P S L L EL L N++S P + L++L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPD 135
L+ N P I NL +L L L N S P + +L L+ L S NK+S
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VS 342
Query: 136 FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK---------LPPSVG 186
NL ++ L NQ+S D + NLT + +L L ++ +P +V
Sbjct: 343 SLANLTNINWLSAGHNQIS-DLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 400
Query: 187 NLT 189
N+T
Sbjct: 401 NVT 403
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 356 CPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRN 415
+ N ++FS+N L P+ ++ NN+ I I P + NL L GL L N
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 117
Query: 416 NLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLV 475
++ + P L N++N L+ L L N G+ L+ ++ + Q + L
Sbjct: 118 QITDIDP--LKNLTN-LNRLELSSNTISDI--SALSGLTSLQQLNFGN---QVTDLKPLA 169
Query: 476 NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
N + LE LD+ +N++SD S L L NL LI +N+ I
Sbjct: 170 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ NL LE LD+S N +S + L ++N S++ +N+ P LG+ + +
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLI-ATNNQISDITP---LGI-LTNLDE 220
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
LS N Q + +L + +NL LDL NNQIS+ P L L L L L +N+ I
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 275
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQ 489
N+L+ +N +N+ P L +++D+ N Q L N +NL L L NNQ
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 490 ISDTFPSWLGALPNLNILILQSNKFHGIIREPG-------------TD----CGFPKLRI 532
I+D P L L NLN L L SN I G TD L
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLER 176
Query: 533 IDISSNRF 540
+DISSN+
Sbjct: 177 LDISSNKV 184
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 394 IGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGV 453
I I+P + L L L+L+ N L + P + N+ N L+ L L N P + L
Sbjct: 272 ISNISP-LAGLTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNISDISPVSSL-- 325
Query: 454 EWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP 495
L+ + S+N + SL N +N+ +L G+NQISD P
Sbjct: 326 TKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 114/261 (43%), Gaps = 12/261 (4%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
LG + D+SS L G S+ + L+L + S ++ + L++LDL
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSV------ESLNLQEHRFSDISSTTFQCFTQLQELDL 282
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGEL-PD 135
+ G +P+ + L+ LK LVLS +F N PSL L + GN L
Sbjct: 283 TATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVG 341
Query: 136 FFGNLPSLEELDLSGNQLSGD--FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQW 193
L +L+ LDLS N + S+ NL+ L+ L+L LG + QL+
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 194 LGLASNNFSGNLP-STIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGG 252
L LA N P S NL L+ L+++ C L L L L+L NHF G
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Query: 253 MELDVFLI-SLKNLEVLYLSS 272
L+ ++ +LEVL LSS
Sbjct: 462 TITKTNLLQTVGSLEVLILSS 482
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 407 LEGLDLSRNNLSGLLPHC----LGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLS 462
L+ LDLS N++ C L N+S HL LNL HN+ G Q F L ++DL+
Sbjct: 349 LQTLDLSHNDIEA--SDCCSLQLKNLS-HLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 463 DNLLQGRIPRS-LVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKF 514
L P+S N L+ L+L + + L LP L L L+ N F
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 479 NLEFLDLGNNQI--SDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDIS 536
NL+ LDL +N I SD L L +L L L N+ G+ + +C P+L ++D++
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKEC--PQLELLDLA 405
Query: 537 SNRFIGKLPSKYFQCWNAMQVVN 559
R P FQ + +QV+N
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLN 428
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 476 NCSNLEFLDLGNNQISD-TFPSWLGALPNLNILILQSNKFHGIIRE 520
N NLE L LG+N IS FP A NL +L Q+N H I RE
Sbjct: 124 NLENLESLYLGSNHISSIKFPKDFPA-RNLKVLDFQNNAIHYISRE 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 121/274 (44%), Gaps = 30/274 (10%)
Query: 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLG--SLKELDLSTNELSGRLPSSIGNL 68
GG S +L L +LDLS N LS + S + G SLK LDLS N + + S+ L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395
Query: 69 SSLEKLDLSL-NVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGN 127
LE LD N+ +V +L +L L +S T+ L SLE+L ++GN
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 128 KISGE-LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVG 186
LPD F L +L LDLS Q L++LS P +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQ--------------LEQLS----------PTAFN 491
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNL-TQLSCLDLS 245
+L+ LQ L ++ NNF L SL+ LD S + L++ + L+ L+L+
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551
Query: 246 RNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHT 279
+N F+ E FL +K+ L + R+ T
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 585
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 153 HLDLSSNKIQSIY 165
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 123/293 (41%), Gaps = 45/293 (15%)
Query: 35 GEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN--VFSGDMPAVIGNL 92
G+ P L SLK L ++N+ G S + +L SLE LDLS N F G
Sbjct: 317 GQFPTL--KLKSLKRLTFTSNK-GGNAFSEV-DLPSLEFLDLSRNGLSFKG--------- 363
Query: 93 SSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQ 152
S+++F + SL+ LDLS N + +F G L LE LD +
Sbjct: 364 ------CCSQSDFGT---------TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN 407
Query: 153 LS--GDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGN-LPSTI 209
L +FSV L +L L + L+ L+ L +A N+F N LP
Sbjct: 408 LKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 210 GNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF-LISLKNLEVL 268
LR+L LD+S C P++ +L+ L L++S N+F LD F L +L+VL
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVL 523
Query: 269 YLSSNRLSVHTKATSSTTSQKFGTVGLR------SCNLTEFPNFLKNQKNVAV 315
S N + K + L +C F ++K+Q+ + V
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 140/559 (25%), Positives = 213/559 (38%), Gaps = 94/559 (16%)
Query: 50 LDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDL 109
++L+ ++ LP S NL DLS N + L+ L LS+ +
Sbjct: 15 MELNFYKIPDNLPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 110 PAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKR 169
+L L L L+GN I F L SL++L L+ + G+L +LK
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 170 LSLES---CSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS 226
L++ SF KLP NLT L+ L L+SN + + L + L++S
Sbjct: 129 LNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 227 GPI----PSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKAT 282
P+ P + + + +L L L RN+F + + L LEV +RL V +
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTL-RNNFDSLNVMKTCIQGLAGLEV-----HRL-VLGEFR 238
Query: 283 SSTTSQKFGTVGLRS-CNLT--EFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXX 339
+ +KF L CNLT EF +A LD + I
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEF--------RLAYLDYYLDDI---------------- 274
Query: 340 XXXXXXXTGLDQYPVVCPWGNR--PFSLDFSSNFLQ------GPLPIPPPRT--RNYLIS 389
T + + +V R FS +F L+ G P ++ R S
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334
Query: 390 NNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNI---SNHLSILNLQHNKFFGTI 446
N GG A +L LE LDLSRN LS C + L L+L N T+
Sbjct: 335 NK---GGNAFSEVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388
Query: 447 PQTFLGVEWLRMIDLSD-NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLN 505
FLG+E L +D NL Q ++ NL +LD+ + F L +L
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 506 ILILQSNKFH-----GIIRE------------------PGTDCGFPKLRIIDISSNRFIG 542
+L + N F I E P L+++++S N F
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 543 KLPSKYFQCWNAMQVVNTS 561
L + ++C N++QV++ S
Sbjct: 509 -LDTFPYKCLNSLQVLDYS 526
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 131/518 (25%), Positives = 199/518 (38%), Gaps = 114/518 (22%)
Query: 9 KTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRL----PSS 64
++ +P NL+ L +LDLSSN++ + L + L+LS + + P +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 65 IGNLSSLEKLDL-----SLNVFSGDMPAVIGNLSSLKA--LVLSKTNFSSDLPAF----- 112
+ L KL L SLNV M I L+ L+ LVL + +L F
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNV----MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 113 --IGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLS--GDFSVSTGNLTSLK 168
+ NL E + ++ D F L ++ L + DFS + G +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG----WQ 307
Query: 169 RLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISS--CNFS 226
L L +C F G+ P L L+ L SN GN S + +L SLE LD+S +F
Sbjct: 308 HLELVNCKF-GQFP--TLKLKSLKRLTFTSNK-GGNAFSEV-DLPSLEFLDLSRNGLSFK 362
Query: 227 GPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTT 286
G S T L LDLS F+G + + + L+ LE L + L
Sbjct: 363 GCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLK---------- 409
Query: 287 SQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXX 346
++EF FL + +N+ LD+S H ++
Sbjct: 410 ------------QMSEFSVFL-SLRNLIYLDIS--HTHTRVA-------------FNGIF 441
Query: 347 TGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNF 406
GL V+ GN F NFL I + NL F
Sbjct: 442 NGLSSLEVLKMAGN-----SFQENFL----------------------PDIFTELRNLTF 474
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
LDLS+ L L P ++S+ L +LN+ HN FF + + L+++D S N +
Sbjct: 475 ---LDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 467 QGRIPRSLVNC-SNLEFLDLGNNQISDT-----FPSWL 498
+ L + S+L FL+L N + T F W+
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
LE LD +NL + + +L L++ H F G+ L ++ ++ N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 467 QGR-IPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDC 525
Q +P NL FLDL Q+ P+ +L +L +L + N F + P C
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKC 516
Query: 526 GFPKLRIIDISSNRFI 541
L+++D S N +
Sbjct: 517 -LNSLQVLDYSLNHIM 531
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 121/274 (44%), Gaps = 30/274 (10%)
Query: 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLG--SLKELDLSTNELSGRLPSSIGNL 68
GG S +L L +LDLS N LS + S + G SLK LDLS N + + S+ L
Sbjct: 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL 419
Query: 69 SSLEKLDLSL-NVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGN 127
LE LD N+ +V +L +L L +S T+ L SLE+L ++GN
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479
Query: 128 KISGE-LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVG 186
LPD F L +L LDLS Q L++LS P +
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQ--------------LEQLS----------PTAFN 515
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNL-TQLSCLDLS 245
+L+ LQ L ++ NNF L SL+ LD S + L++ + L+ L+L+
Sbjct: 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575
Query: 246 RNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHT 279
+N F+ E FL +K+ L + R+ T
Sbjct: 576 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 609
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 177 HLDLSSNKIQSIY 189
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 120/284 (42%), Gaps = 43/284 (15%)
Query: 44 LGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN--VFSGDMPAVIGNLSSLKALVLS 101
L SLK L ++N+ G S + +L SLE LDLS N F G S
Sbjct: 348 LKSLKRLTFTSNK-GGNAFSEV-DLPSLEFLDLSRNGLSFKG---------------CCS 390
Query: 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLS--GDFSV 159
+++F + SL+ LDLS N + +F G L LE LD + L +FSV
Sbjct: 391 QSDFGT---------ISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV 440
Query: 160 STGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGN-LPSTIGNLRSLETL 218
L +L L + L+ L+ L +A N+F N LP LR+L L
Sbjct: 441 FLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 219 DISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF-LISLKNLEVLYLSSNRLSV 277
D+S C P++ +L+ L L++S N+F LD F L +L+VL S N +
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDYSLNHIMT 556
Query: 278 HTKATSSTTSQKFGTVGLR------SCNLTEFPNFLKNQKNVAV 315
K + L +C F ++K+Q+ + V
Sbjct: 557 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 600
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 144/561 (25%), Positives = 217/561 (38%), Gaps = 98/561 (17%)
Query: 50 LDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDL 109
++L+ ++ LP S NL DLS N + L+ L LS+ +
Sbjct: 39 MELNFYKIPDNLPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 92
Query: 110 PAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKR 169
+L L L L+GN I F L SL++L L+ + G+L +LK
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Query: 170 LSLES---CSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS 226
L++ SF KLP NLT L+ L L+SN + + L + L++S
Sbjct: 153 LNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210
Query: 227 GPI----PSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKAT 282
P+ P + + + +L L L RN+F + + L LEV +RL V +
Sbjct: 211 NPMNFIQPGAFKEI-RLHKLTL-RNNFDSLNVMKTCIQGLAGLEV-----HRL-VLGEFR 262
Query: 283 SSTTSQKFGTVGLRS-CNLT--EFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXX 339
+ +KF L CNLT EF +A LD + G I +
Sbjct: 263 NEGNLEKFDKSALEGLCNLTIEEF--------RLAYLDY---YLDGIIDLF--------- 302
Query: 340 XXXXXXXTGLDQYPVVCPWGNR--PFSLDFSSNFLQ------GPLPIPPPRT--RNYLIS 389
T + + +V R FS +F L+ G P ++ R S
Sbjct: 303 ----NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 358
Query: 390 NNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHC-----LGNISNHLSILNLQHNKFFG 444
N GG A +L LE LDLSRN LS C G IS L L+L N
Sbjct: 359 NK---GGNAFSEVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTIS--LKYLDLSFNGVI- 410
Query: 445 TIPQTFLGVEWLRMIDLSD-NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPN 503
T+ FLG+E L +D NL Q ++ NL +LD+ + F L +
Sbjct: 411 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470
Query: 504 LNILILQSNKFH-----GIIRE------------------PGTDCGFPKLRIIDISSNRF 540
L +L + N F I E P L+++++S N F
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 541 IGKLPSKYFQCWNAMQVVNTS 561
L + ++C N++QV++ S
Sbjct: 531 FS-LDTFPYKCLNSLQVLDYS 550
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
LE LD +NL + + +L L++ H F G+ L ++ ++ N
Sbjct: 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Query: 467 QGR-IPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDC 525
Q +P NL FLDL Q+ P+ +L +L +L + N F + P C
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKC 540
Query: 526 GFPKLRIIDISSNRFI 541
L+++D S N +
Sbjct: 541 -LNSLQVLDYSLNHIM 555
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 120/495 (24%), Positives = 182/495 (36%), Gaps = 116/495 (23%)
Query: 13 IPSSLGNLSKLIYLDLSSNQLSG----------------------EIPASIGNLGSLKEL 50
+P NL+ L +LDLSSN++ P + G+ KE+
Sbjct: 165 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 224
Query: 51 DLSTNELSGRLPS------SIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV-LSKT 103
L L S I L+ LE L L F + + S+L+ L L+
Sbjct: 225 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284
Query: 104 NFS-----------SDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQ 152
F DL + N+ S ++ ++ ++ DF N + L+L +
Sbjct: 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK----DFSYNF-GWQHLELVNCK 339
Query: 153 LSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASN--NFSGNLPSTIG 210
G F T L SLKRL+ S G S +L L++L L+ N +F G +
Sbjct: 340 F-GQF--PTLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394
Query: 211 NLRSLETLDISSCNFSGPIP--SSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVL 268
SL+ LD+S F+G I S+ L QL LD ++ E VFL SL+NL L
Sbjct: 395 GTISLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYL 450
Query: 269 YLSSNRLSVHTKAT-----SSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRI 323
+S HT+ + +S + + S P+ +N+ LDLS ++
Sbjct: 451 DIS----HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 324 HGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRT 383
P L V+ N FSLD
Sbjct: 507 EQLSPTAF---------------NSLSSLQVLNMSHNNFFSLD----------------- 534
Query: 384 RNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFF 443
P+ C LN L+ LD S N++ L + + L+ LNL N F
Sbjct: 535 -------------TFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Query: 444 GTIP-QTFLGVEWLR 457
T Q+FL +W++
Sbjct: 581 CTCEHQSFL--QWIK 593
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 118/275 (42%), Gaps = 16/275 (5%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELS--GRLPSSIGNLS 69
GIPSS L +L SN+L L L +L LS+N LS G S +
Sbjct: 25 GIPSSATRL------ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 70 SLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS--SDLPAFIGNLPSLEILDLSGN 127
SL+ LDLS N +G L L+ L +N S+ F+ L +L LD+S
Sbjct: 79 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHT 136
Query: 128 KISGELPDFFGNLPSLEELDLSGNQLSGDF--SVSTGNLTSLKRLSLESCSFLGKLPPSV 185
F L SLE L ++GN +F + T L +L L L C P +
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAF 195
Query: 186 GNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNL-TQLSCLDL 244
+L+ LQ L ++ NNF L SL+ LD S + L++ + L+ L+L
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
Query: 245 SRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHT 279
++N F+ E FL +K+ L + R+ T
Sbjct: 256 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 290
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 106/259 (40%), Gaps = 17/259 (6%)
Query: 69 SSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNL--PSLEILDLSG 126
SS +L+L N V L+ L L LS S + SL+ LDLS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 127 NKISGELPDFFGNLPSLEELDLSGNQLS--GDFSVSTGNLTSLKRLSLESCSFLGKLPPS 184
N + +F G L LE LD + L +FSV L +L L +
Sbjct: 88 NGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGI 145
Query: 185 VGNLTQLQWLGLASNNFSGN-LPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLD 243
L+ L+ L +A N+F N LP LR+L LD+S C P++ +L+ L L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 244 LSRNHFSGGMELDVF-LISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLR------ 296
+S N+F LD F L +L+VL S N + K + L
Sbjct: 206 MSHNNF---FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262
Query: 297 SCNLTEFPNFLKNQKNVAV 315
+C F ++K+Q+ + V
Sbjct: 263 TCEHQSFLQWIKDQRQLLV 281
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
LE LD +NL + + +L L++ H F G+ L ++ ++ N
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 467 QGR-IPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDC 525
Q +P NL FLDL Q+ P+ +L +L +L + N F + P
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-- 220
Query: 526 GFPKLRIIDISSNRFI 541
L+++D S N +
Sbjct: 221 CLNSLQVLDYSLNHIM 236
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 126/275 (45%), Gaps = 21/275 (7%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKL 74
S+ +++ LDL++ L+G +P+ I + SLK+L L+ N + + SL L
Sbjct: 271 STFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDL 329
Query: 75 DLSLNVFSGDM-PAVIGNLSSLKALVLSKTNF-SSDLPAF-IGNLPSLEILDLSGNKISG 131
+ N+ D+ + L +L+ L LS ++ +SD + NL L+ L+LS N+ G
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
Query: 132 ELPDFFGNLPSLEELDLSGNQLSGDFSVST-GNLTSLKRLSLESCSFLGKLPPSVGNLTQ 190
F P LE LD++ L S NL L+ L+L C + L
Sbjct: 390 LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQD 449
Query: 191 LQWLGLASNNFSG------NLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDL 244
L+ L L N+F NL +G SLE L +SSCN + L ++ LDL
Sbjct: 450 LRHLNLQGNSFQDGSISKTNLLQMVG---SLEILILSSCNLLSIDQQAFHGLRNVNHLDL 506
Query: 245 SRNHFSGGMELDVFLISLKNLEVLYL--SSNRLSV 277
S N +G + +L +L+ LYL +SN + +
Sbjct: 507 SHNSLTGDS-----MDALSHLKGLYLNMASNNIRI 536
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 472 RSLVNCSNLEFLDLGNNQI--SDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPK 529
R L NL+ LDL ++ I SD L L +L L L N+ G+ + +C P+
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKEC--PQ 400
Query: 530 LRIIDISSNRFIGKLPSKYFQCWNAMQVVNTS 561
L ++D++ K P FQ + ++V+N S
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 407 LEGLDLSRNNLSGLLPHC----LGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLS 462
L+ LDLS +++ C L N+ HL LNL +N+ G Q F L ++D++
Sbjct: 351 LQKLDLSHSDIEA--SDCCNLQLKNLR-HLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 463 DNLLQGRIPRS-LVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKF 514
L + P S N L L+L + + + L L +L L LQ N F
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 154 HLDLSSNKIQSIY 166
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174
+ P L++LDLS +I + +L L L L+GN + + L+SL++L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 175 CSFLGKLPPSVGNLTQLQWLGLASNNF-SGNLPSTIGNLRSLETLDISSCNFSGPIPSSL 233
+ +G+L L+ L +A N S LP NL +LE LD+SS + L
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Query: 234 RNLTQL 239
R L Q+
Sbjct: 171 RVLHQM 176
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 456 LRMIDLSDNLLQG-RIPRSLVNCSNLEFLDLGNNQISDTFPSWLGAL 501
L+ ++++ NL+Q ++P N +NLE LDL +N+I + + L L
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 153 HLDLSSNKIQSIY 165
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRL-SLE 173
+ P L++LDLS +I + +L L L L+GN + + L+SL++L ++E
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 174 S-CSFLGKLPPSVGNLTQLQWLGLASNNF-SGNLPSTIGNLRSLETLDISSCNFSGPIPS 231
+ + L P +G+L L+ L +A N S LP NL +LE LD+SS +
Sbjct: 110 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 232 SLRNLTQL 239
LR L Q+
Sbjct: 168 DLRVLHQM 175
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 456 LRMIDLSDNLLQG-RIPRSLVNCSNLEFLDLGNNQISDTFPSWLGAL 501
L+ ++++ NL+Q ++P N +NLE LDL +N+I + + L L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 155 HLDLSSNKIQSIY 167
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174
+ P L++LDLS +I + +L L L L+GN + + L+SL++L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 175 CSFLGKLPPSVGNLTQLQWLGLASNNF-SGNLPSTIGNLRSLETLDISSCNFSGPIPSSL 233
+ +G+L L+ L +A N S LP NL +LE LD+SS + L
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
Query: 234 RNLTQL 239
R L Q+
Sbjct: 172 RVLHQM 177
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 456 LRMIDLSDNLLQG-RIPRSLVNCSNLEFLDLGNNQISDTFPSWLGAL 501
L+ ++++ NL+Q ++P N +NLE LDL +N+I + + L L
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 154 HLDLSSNKIQSIY 166
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174
+ P L++LDLS +I + +L L L L+GN + + L+SL++L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 175 CSFLGKLPPSVGNLTQLQWLGLASNNF-SGNLPSTIGNLRSLETLDISSCNFSGPIPSSL 233
+ +G+L L+ L +A N S LP NL +LE LD+SS + L
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Query: 234 RNLTQL 239
R L Q+
Sbjct: 171 RVLHQM 176
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 456 LRMIDLSDNLLQG-RIPRSLVNCSNLEFLDLGNNQISDTFPSWLGAL 501
L+ ++++ NL+Q ++P N +NLE LDL +N+I + + L L
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 173
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 153 HLDLSSNKIQSIY 165
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 44 LGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN--VFSGDMPAVIGNLSSLKALVLS 101
L SLK L ++N+ G S + +L SLE LDLS N F G S
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEV-DLPSLEFLDLSRNGLSFKG---------------CCS 366
Query: 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLS--GDFSV 159
+++F + SL+ LDLS N + +F G L LE LD + L +FSV
Sbjct: 367 QSDFGT---------TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV 416
Query: 160 STGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGN-LPSTIGNLRSLETL 218
L +L L + L+ L+ L +A N+F N LP LR+L L
Sbjct: 417 FLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 219 DISSCNFSGPIPSSLRNLTQLSCLDLSRNH 248
D+S C P++ +L+ L L+++ N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 91/195 (46%), Gaps = 35/195 (17%)
Query: 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLG--SLKELDLSTNELSGRLPSSIGNL 68
GG S +L L +LDLS N LS + S + G SLK LDLS N + + S+ L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395
Query: 69 SSLEKLD---------------LSL-NVFSGDMP---------AVIGNLSSLKALVLSKT 103
LE LD LSL N+ D+ + LSSL+ L ++
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 104 NFSSD-LPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG 162
+F + LP L +L LDLS ++ P F +L SL+ L+++ NQL SV G
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK---SVPDG 512
Query: 163 ---NLTSLKRLSLES 174
LTSL+++ L +
Sbjct: 513 IFDRLTSLQKIWLHT 527
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 131/515 (25%), Positives = 199/515 (38%), Gaps = 62/515 (12%)
Query: 70 SLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI 129
S + LDLS N + L+ L LS+ + +L L L L+GN I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 130 SGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES---CSFLGKLPPSVG 186
F L SL++L L+ + G+L +LK L++ SF KLP
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFS 146
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPI----PSSLRNLTQLSCL 242
NLT L+ L L+SN + + L + L++S P+ P + + + +L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205
Query: 243 DLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRS-CNLT 301
L RN+F + + L LEV +RL V + + +KF L CNLT
Sbjct: 206 TL-RNNFDSLNVMKTCIQGLAGLEV-----HRL-VLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 302 --EFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPWG 359
EF +A LD + I T + + +V
Sbjct: 259 IEEF--------RLAYLDYYLDDI----------------IDLFNCLTNVSSFSLVSVTI 294
Query: 360 NR--PFSLDFSSNFLQ------GPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLD 411
R FS +F L+ G P ++ L + S GG A +L LE LD
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL-TFTSNKGGNAFSEVDLPSLEFLD 353
Query: 412 LSRNNLSGLLPHCLGNI---SNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD-NLLQ 467
LSRN LS C + L L+L N T+ FLG+E L +D NL Q
Sbjct: 354 LSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 468 GRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGF 527
++ NL +LD+ + F L +L +L + N F P
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTEL 469
Query: 528 PKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTSG 562
L +D+S + + +L F +++QV+N +
Sbjct: 470 RNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS 503
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 13 IPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLE 72
+P L L +LDLS QL P + +L SL+ L++++N+L L+SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 73 KLDLSLNVFSGDMPAV 88
K+ L N + P +
Sbjct: 522 KIWLHTNPWDCSCPRI 537
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
LE LD +NL + + +L L++ H F G+ L ++ ++ N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 467 QGR-IPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517
Q +P NL FLDL Q+ P+ +L +L +L + SN+ +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 142/365 (38%), Gaps = 67/365 (18%)
Query: 13 IPSSLGNLSKLIYLDLSSNQLSG----------------------EIPASIGNLGSLKEL 50
+P NL+ L +LDLSSN++ P + G+ KE+
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 51 DLSTNELSGRLPS------SIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV-LSKT 103
L L S I L+ LE L L F + + S+L+ L L+
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 104 NFS-----------SDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQ 152
F DL + N+ S ++ ++ ++ DF N + L+L +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK----DFSYNF-GWQHLELVNCK 315
Query: 153 LSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASN--NFSGNLPSTIG 210
G F T L SLKRL+ S G S +L L++L L+ N +F G +
Sbjct: 316 F-GQF--PTLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 211 NLRSLETLDISSCNFSGPIP--SSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVL 268
SL+ LD+S F+G I S+ L QL LD ++ E VFL SL+NL L
Sbjct: 371 GTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYL 426
Query: 269 YLSSNRLSVHTKAT-----SSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRI 323
+S HT+ + +S + + S P+ +N+ LDLS ++
Sbjct: 427 DIS----HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 324 HGKIP 328
P
Sbjct: 483 EQLSP 487
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 20 LSKLIYLDLSSNQLSGE-IPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSL 78
LS L L ++ N +P L +L LDLS +L P++ +LSSL+ L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 79 NVFSGDMPAVIGNLSSLKALVLSKTNFSSDLP 110
N + L+SL+ + L + P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 18 GNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELS--GRLPSSIGNLSSLEKLD 75
+S ++LD S+N L+ + + G+L L+ L L N+L ++ + SL++LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 76 LSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDL---PAFIGNLPSLEILDLSGNKISGE 132
+S N S D G+ S K+L+ N SS++ F P +++LDL NKI
Sbjct: 381 ISQNSVSYDEKK--GDCSWTKSLL--SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS- 435
Query: 133 LPDFFGNLPSLEELDLSGNQLSGDFSVSTG---NLTSLKRLSLES 174
+P L +L+EL+++ NQL SV G LTSL+++ L +
Sbjct: 436 IPKQVVKLEALQELNVASNQLK---SVPDGIFDRLTSLQKIWLHT 477
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVF 81
++ LDL SN++ IP + L +L+EL++++N+L L+SL+K+ L N +
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 82 SGDMPAV 88
P +
Sbjct: 481 DCSCPRI 487
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 111/448 (24%), Positives = 173/448 (38%), Gaps = 69/448 (15%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKL 74
S + +LSKL L +S N++ + L+ LDLS N+L + S +L+ L
Sbjct: 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHL 95
Query: 75 DLSLNVFSGDMPAV--IGNLSSLKALVLSKTNF--SSDLPAFIGNLPSLEIL--DLSGNK 128
DLS N F +P GN+S LK L LS T+ SS LP N+ + ++ + G K
Sbjct: 96 DLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154
Query: 129 ISGE-LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK----RLSLE--SCSF---- 177
E L DF N SL + + + VS + +L+ + LE CS+
Sbjct: 155 EDPEGLQDF--NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212
Query: 178 LGKLP--PSVGNLTQLQWLGLASNNFSGNLP---------STIGNLRSLETLDISSCNFS 226
L KL P + NLT L + N+F L +I N++ LD ++S
Sbjct: 213 LAKLQTNPKLSNLT-LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271
Query: 227 GPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSST- 285
G +L LS + + F + S N++ +S R+ VH S
Sbjct: 272 GT------SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKIS 324
Query: 286 ------------TSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLE 333
T F G +LTE +L ++ + KI + +
Sbjct: 325 PFLHLDFSNNLLTDTVFENCG----HLTELETL--------ILQMNQLKELSKIAEMTTQ 372
Query: 334 QXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPL-PIPPPRTRNYLISNNS 392
D+ C W SL+ SSN L + PPR + + +N
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432
Query: 393 LIGGIAPWICNLNFLEGLDLSRNNLSGL 420
I I + L L+ L+++ N L +
Sbjct: 433 -IKSIPKQVVKLEALQELNVASNQLKSV 459
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 347 TGLDQYPVVCPWGNRPF-SLDFSSNFLQGPL-----PIPPPRTRNYLISNNSLIGGIAPW 400
+G ++CP PF LDFS+N L + + T ++ + IA
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369
Query: 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
+ L+ LD+S+N++S + + L LN+ N TI + ++++D
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427
Query: 461 LSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIRE 520
L N ++ IP+ +V L+ L++ +NQ+ L +L + L +N +
Sbjct: 428 LHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW------ 480
Query: 521 PGTDCGFPKL 530
DC P++
Sbjct: 481 ---DCSCPRI 487
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 483 LDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSN 538
LD NN ++DT G L L LILQ N+ + + L+ +DIS N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDLS N L S + L+ LDLS E+ + +LS L L L+ N
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLE 144
LSSL+ LV +TN +S IG+L +L+ L+++ N I S +LP++F NL +LE
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 145 ELDLSGNQLSGDF 157
LDLS N++ +
Sbjct: 155 HLDLSSNKIQSIY 167
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRL-SLE 173
+ P L++LDLS +I + +L L L L+GN + + L+SL++L +LE
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 174 S-CSFLGKLPPSVGNLTQLQWLGLASNNF-SGNLPSTIGNLRSLETLDISSCNFSGPIPS 231
+ + L P +G+L L+ L +A N S LP NL +LE LD+SS +
Sbjct: 112 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 232 SLRNLTQL 239
LR L Q+
Sbjct: 170 DLRVLHQM 177
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 456 LRMIDLSDNLLQG-RIPRSLVNCSNLEFLDLGNNQISDTFPSWLGAL 501
L+ ++++ NL+Q ++P N +NLE LDL +N+I + + L L
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 9/217 (4%)
Query: 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI 65
L+ GIP+S S+ I+L N++S AS + +L L L +N L+G ++
Sbjct: 22 LQAVPTGIPAS----SQRIFL--HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAF 75
Query: 66 GNLSSLEKLDLSLNV-FSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDL 124
L+ LE+LDLS N P L L L L + P L +L+ L L
Sbjct: 76 TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYL 135
Query: 125 SGNKISGELPD-FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPP 183
N + LPD F +L +L L L GN++ + L SL RL L P
Sbjct: 136 QDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 184 SVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDI 220
+ +L +L L L +NN S + LRSL+ L +
Sbjct: 195 AFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRL 231
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 3/160 (1%)
Query: 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGN-QLSGDFSVSTGNLTSLKRLSLESCSF 177
L IL L N ++G F L LE+LDLS N QL + L L L L+ C
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 178 LGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLT 237
P L LQ+L L NN +T +L +L L + + R L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 238 QLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSV 277
L L L +NH + + F L L LYL +N LS+
Sbjct: 177 SLDRLLLHQNHVA-RVHPHAFR-DLGRLMTLYLFANNLSM 214
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 2/140 (1%)
Query: 388 ISNNSLIGGIAPWICNLNFLEGLDLSRN-NLSGLLPHCLGNISNHLSILNLQHNKFFGTI 446
+ +N+L G A L LE LDLS N L + P + HL L+L
Sbjct: 62 LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG-HLHTLHLDRCGLQELG 120
Query: 447 PQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNI 506
P F G+ L+ + L DN LQ + + NL L L N+I L +L+
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 507 LILQSNKFHGIIREPGTDCG 526
L+L N + D G
Sbjct: 181 LLLHQNHVARVHPHAFRDLG 200
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRI--PRSLVNCSNLEFLDLGNNQ 489
L+IL L N G F G+ L +DLSDN Q R+ P + +L L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN-AQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 490 ISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYF 549
+ + P L L L LQ N + D G L + + NR I +P F
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG--NLTHLFLHGNR-IPSVPEHAF 172
Query: 550 Q 550
+
Sbjct: 173 R 173
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 124/262 (47%), Gaps = 19/262 (7%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKL 74
S L NL KL L + +N+++ +++ NL +L+EL L+ + +S P + NL+ L
Sbjct: 82 SPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKXYSL 137
Query: 75 DLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELP 134
+L N D+ + N + L L ++++ P I NL L L L+ N+I P
Sbjct: 138 NLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194
Query: 135 DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWL 194
+L SL NQ++ V N T L L + + P + NL+QL WL
Sbjct: 195 --LASLTSLHYFTAYVNQITDITPV--ANXTRLNSLKIGNNKITDLSP--LANLSQLTWL 248
Query: 195 GLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGME 254
+ +N S + + +L L+ L++ S S S L NL+QL+ L L+ N G E
Sbjct: 249 EIGTNQISD--INAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL--GNE 302
Query: 255 LDVFLISLKNLEVLYLSSNRLS 276
+ L NL L+LS N ++
Sbjct: 303 DXEVIGGLTNLTTLFLSQNHIT 324
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKL 74
S L NLS+L +L++ +NQ+S +I A + +L LK L++ +N++S S + NLS L L
Sbjct: 237 SPLANLSQLTWLEIGTNQIS-DINA-VKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSL 292
Query: 75 DLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLP 110
L+ N + VIG L++L L LS+ + + P
Sbjct: 293 FLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 350 DQYPVVCPWGN--RPFSLDFSSNF-LQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNF 406
D + P N + +SL+ +N L P+ NYL S + + P I NL
Sbjct: 120 DNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP-IANLTD 178
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
L L L+ N + + P L ++++ L N+ P L + + +N +
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTS-LHYFTAYVNQITDITP--VANXTRLNSLKIGNNKI 233
Query: 467 QGRIPRSLVNCSNLEFLDLGNNQISD 492
P L N S L +L++G NQISD
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD 257
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKL 74
S L NLS+L L L++NQL E IG L +L L LS N ++ P L+SL K
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKX 335
Query: 75 D 75
D
Sbjct: 336 D 336
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 114/272 (41%), Gaps = 47/272 (17%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L L+LS N L ++ L + +DL N ++ + L L+ LDL N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Query: 80 V-----FSGDMPAVIGNLSSLKALVLSKTNFSS-------------DLPAFIGNLPSLEI 121
F +P + LS K + L K N ++ D+ F+ +P L+I
Sbjct: 373 ALTTIHFIPSIPDIF--LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQI 430
Query: 122 LDLSGNKISG----ELPDFFGNLPSLEELDLSGNQLSGDFSVST-----GNLTSLKRLSL 172
L L+ N+ S + P PSLE+L L N L + L+ L+ L L
Sbjct: 431 LILNQNRFSSCSGDQTP---SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 173 ESCSFLGKLPPSV-GNLTQLQWLGLASNNFS----GNLPSTIGNLRSLETLDISSCNFSG 227
++L LPP V +LT L+ L L SN + +LP+ +LE LDIS
Sbjct: 488 NH-NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDISRNQLLA 540
Query: 228 PIPSSLRNLTQLSCLDLSRNHFSGGMELDVFL 259
P P LS LD++ N F EL F+
Sbjct: 541 PNPDV---FVSLSVLDITHNKFICECELSTFI 569
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 63/320 (19%)
Query: 19 NLSKLIYLDLSSNQL-SGEIPASIGNLGSLKELDLSTNE--------------------- 56
NL L LDLS NQ+ S + S G L SLK +D S+N+
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 57 -----LSGRLPSSIGNLSS------LEKLDLSLNVFSGDMPAVIGNL---SSLKALVLSK 102
L R+ G + LE LD+S N ++ D+ N S +L+L+
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 103 TNFSS----------DLPAFIG-NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGN 151
+ D F G S+ LDLS + F L L+ L+L+ N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 152 QLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPS-VGNLTQLQWLGLASNNFSGNLPSTIG 210
+++ + L +L+ L+L S + LG+L S L ++ ++ L N+ + T
Sbjct: 301 KINKIADEAFYGLDNLQVLNL-SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 211 NLRSLETLD-----ISSCNFSGPIPS---SLRNLTQLSCLDLSRN--HFS----GGMELD 256
L L+TLD +++ +F IP S L L ++L+ N H S +++
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419
Query: 257 VFLISLKNLEVLYLSSNRLS 276
FL+ + +L++L L+ NR S
Sbjct: 420 YFLLRVPHLQILILNQNRFS 439
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG 162
T + D AF NLP+L ILDL +KI PD F L L EL L LS D + G
Sbjct: 60 TPLTIDKEAF-RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDG 117
Query: 163 ---NLTSLKRLSLESCSFLG-KLPPSVGNLTQLQWLGLASN 199
NL +L RL L L PS G L L+ + +SN
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 40 SIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV 99
+ NL +L+ LDL ++++ P + L L +L L F G AV+ +
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL---YFCGLSDAVLKD-------- 116
Query: 100 LSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLEELDLSGNQLSGDFS 158
+ NL +L LDLS N+I S L FG L SL+ +D S NQ+ F
Sbjct: 117 -----------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI---FL 162
Query: 159 VSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETL 218
V L L+ +L SF S+ + + W G N F + + + T+
Sbjct: 163 VCEHELEPLQGKTL---SFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTV 218
Query: 219 DISSCNFSGPIPSS 232
DI+ NFS I S
Sbjct: 219 DITG-NFSNAISKS 231
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQIS 491
L +LNL +NK + F G++ L++++LS NLL + + ++DL N I+
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 492 DTFPSWLGALPNLNILILQSNKFHGI 517
L L L L+ N I
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 91/223 (40%), Gaps = 33/223 (14%)
Query: 364 SLDFSSN--FLQGPLPIPPPRTRN---YLISNNSLIGGIA-PWICNLN-----FLEGLDL 412
S+DFSSN FL + P + + + ++ NSL ++ W +N LE LD+
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211
Query: 413 SRNNLSGLLPHCLGNISNHLSI-----LNLQHNKF-----FGTIPQ----TFLGVEW--L 456
S N G GN SN +S L L H+ F I TF G+ +
Sbjct: 212 SGN---GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268
Query: 457 RMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHG 516
R +DLS + R +L+ L+L N+I+ L NL +L L N
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 517 IIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVN 559
+ G PK+ ID+ N I + + F+ +Q ++
Sbjct: 329 LY--SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLD 368
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 431 HLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQI 490
HL +L L HN P F + LR + L+ N L L +NLE LD+ NQ+
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL 538
Query: 491 SDTFPSWLGALPNLNILILQSNKF 514
P +L++L + NKF
Sbjct: 539 LAPNPD---VFVSLSVLDITHNKF 559
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 28/227 (12%)
Query: 50 LDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDL 109
LDL N + + LE+L+L+ N+ S P NL +L+ L L ++N +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL-RSNRLKLI 95
Query: 110 P--AFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL 167
P F G L +L LD+S NKI L F +L +L+ L++ N L + L SL
Sbjct: 96 PLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDIS------ 221
++L+LE C+ ++ +L L L L N + + L L+ L+IS
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 222 ------------------SCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250
CN + ++R+L L L+LS N S
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 28/229 (12%)
Query: 120 EILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES----- 174
+LDL N+I D F + P LEEL+L+ N +S + NL +L+ L L S
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 175 --------CSFLGKLPPS-----------VGNLTQLQWLGLASNNFSGNLPSTIGNLRSL 215
S L KL S +L L+ L + N+ L SL
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 216 ETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRL 275
E L + CN + +L +L L L L H + D L L+VL + S+
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRL--RHLNINAIRDYSFKRLYRLKVLEI-SHWP 211
Query: 276 SVHTKATSSTTSQKFGTVGLRSCNLTEFPNF-LKNQKNVAVLDLSSNRI 323
+ T + ++ + CNLT P +++ + L+LS N I
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 14/164 (8%)
Query: 13 IPS-SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLST-NELSGRLPSSIGNLSS 70
IP+ +L +L LI L L ++ S L LK L++S L P+ + L+
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 71 LEKLDLSLNVFSGDMPAV----IGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSG 126
SL++ ++ AV + +L L+ L LS S+ + + L L+ + L G
Sbjct: 227 T-----SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Query: 127 NKISGELPDFFGNLPSLEELDLSGNQLSG-DFSV--STGNLTSL 167
+++ P F L L L++SGNQL+ + SV S GNL +L
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI 65
L K IPSS N+ DLS N L S N L+ LDLS E+ +
Sbjct: 23 LSKVPDDIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76
Query: 66 GNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAF-IGNLPSLEILDL 124
L L L L+ N P L+SL+ LV +T +S L +F IG L +L+ L++
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNV 135
Query: 125 SGNKI-SGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKR 169
+ N I S +LP +F NL +L +DLS N + +++ +L L+
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ---TITVNDLQFLRE 178
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLG--SLKELDLSTNELSGRLPS 63
L G I L L YLDLS N LS S +LG SL+ LDLS N + + +
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA 393
Query: 64 SIGNLSSLEKLDLSLNVFS--GDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEI 121
+ L L+ LD + + A + L L L +S TN D L SL
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452
Query: 122 LDLSGNKIS-GELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
L ++GN L + F N +L LDLS QL +S G +L RL L
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE---QISWGVFDTLHRLQL 501
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 59 GRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPS 118
++P I SS + +DLS N N S L+ L LS+ + L
Sbjct: 24 SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLS-----LE 173
L L L+GN I P F L SLE L +L+ S G L +LK+L+ +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 174 SCSFLGKLPPSVGNLTQLQWLGLASN 199
SC KLP NLT L + L+ N
Sbjct: 142 SC----KLPAYFSNLTNLVHVDLSYN 163
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 99/259 (38%), Gaps = 50/259 (19%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLS--GDFSVSTGNLTSLKRLSL 172
+LP L+ L L+ NK S LPSL LDLS N LS G S S SL+ L L
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 173 ESCSFLGKLPPSVG--NLTQLQWLGLASNNFSGNLP-STIGNLRSLETLDISSCNFSGPI 229
SF G + S L +LQ L + S +L L LDIS N
Sbjct: 384 ---SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440
Query: 230 PSSLRNLTQLSCLDLSRNHFSGGMELDVF-----------------------LISLKNLE 266
LT L+ L ++ N F +VF +L L+
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500
Query: 267 VLYLSSNRL----SVHTKA--TSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSS 320
+L +S N L S H + ST F + L FP K++A +L++
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP------KSLAFFNLTN 554
Query: 321 NRI-----HGKIPKWLLEQ 334
N + H K +W+ EQ
Sbjct: 555 NSVACICEHQKFLQWVKEQ 573
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-GNLSSLEK 73
S+ +L KL+YLD+S + L SL L ++ N S++ N ++L
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477
Query: 74 LDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS 130
LDLS V L L+ L +S N + L SL LD S N+I
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL 167
D+P+ N+ DLS N + F N L+ LDLS ++ + L L
Sbjct: 29 DIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNF-- 225
L L P S LT L+ L + IG L +L+ L+++ NF
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH-NFIH 141
Query: 226 SGPIPSSLRNLTQLSCLDLSRNH 248
S +P+ NLT L +DLS N+
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNY 164
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI 65
L K IPSS N+ DLS N L S N L+ LDLS E+ +
Sbjct: 18 LSKVPDDIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 71
Query: 66 GNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAF-IGNLPSLEILDL 124
L L L L+ N P L+SL+ LV +T +S L +F IG L +L+ L++
Sbjct: 72 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNV 130
Query: 125 SGNKI-SGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKR 169
+ N I S +LP +F NL +L +DLS N + +++ +L L+
Sbjct: 131 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ---TITVNDLQFLRE 173
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLG--SLKELDLSTNELSGRLPS 63
L G I L L YLDLS N LS S +LG SL+ LDLS N + + +
Sbjct: 330 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA 388
Query: 64 SIGNLSSLEKLDLSLNVFS--GDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEI 121
+ L L+ LD + + A + L L L +S TN D L SL
Sbjct: 389 NFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNT 447
Query: 122 LDLSGNKIS-GELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
L ++GN L + F N +L LDLS QL +S G +L RL L
Sbjct: 448 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE---QISWGVFDTLHRLQL 496
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 59 GRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPS 118
++P I SS + +DLS N N S L+ L LS+ + L
Sbjct: 19 SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 76
Query: 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLS-----LE 173
L L L+GN I P F L SLE L +L+ S G L +LK+L+ +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 174 SCSFLGKLPPSVGNLTQLQWLGLASN 199
SC KLP NLT L + L+ N
Sbjct: 137 SC----KLPAYFSNLTNLVHVDLSYN 158
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 99/259 (38%), Gaps = 50/259 (19%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLS--GDFSVSTGNLTSLKRLSL 172
+LP L+ L L+ NK S LPSL LDLS N LS G S S SL+ L L
Sbjct: 321 DLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 378
Query: 173 ESCSFLGKLPPSVG--NLTQLQWLGLASNNFSGNLP-STIGNLRSLETLDISSCNFSGPI 229
SF G + S L +LQ L + S +L L LDIS N
Sbjct: 379 ---SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 435
Query: 230 PSSLRNLTQLSCLDLSRNHFSGGMELDVF-----------------------LISLKNLE 266
LT L+ L ++ N F +VF +L L+
Sbjct: 436 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 495
Query: 267 VLYLSSNRL----SVHTKA--TSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSS 320
+L +S N L S H + ST F + L FP K++A +L++
Sbjct: 496 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP------KSLAFFNLTN 549
Query: 321 NRI-----HGKIPKWLLEQ 334
N + H K +W+ EQ
Sbjct: 550 NSVACICEHQKFLQWVKEQ 568
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-GNLSSLEK 73
S+ +L KL+YLD+S + L SL L ++ N S++ N ++L
Sbjct: 413 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 472
Query: 74 LDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS 130
LDLS V L L+ L +S N + L SL LD S N+I
Sbjct: 473 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL 167
D+P+ N+ DLS N + F N L+ LDLS ++ + L L
Sbjct: 24 DIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 77
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNF-- 225
L L P S LT L+ L + IG L +L+ L+++ NF
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH-NFIH 136
Query: 226 SGPIPSSLRNLTQLSCLDLSRNH 248
S +P+ NLT L +DLS N+
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYNY 159
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 6/213 (2%)
Query: 69 SSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNK 128
S L++LDL+ S ++P+ + LS+LK LVLS F + N PSL L + GN
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 129 ISGEL-PDFFGNLPSLEELDLSGNQL--SGDFSVSTGNLTSLKRLSLESCSFLGKLPPSV 185
EL NL +L ELDLS + + S ++ NL+ L+ L+L L +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 186 GNLTQLQWLGLASNNFS-GNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDL 244
QL+ L LA + S NL L+ L++S L L L+L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 245 SRNHF-SGGMELDVFLISLKNLEVLYLSSNRLS 276
NHF G ++ L +L LE+L LS LS
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 8/239 (3%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEI-PASIGNLGSLKELDLSTN--ELSGRLPSSIGNLSSLE 72
S N L +L + N E+ + NL +L+ELDLS + E S + NLS L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379
Query: 73 KLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS-SDLPAFIGNLPSLEILDLSGNKISG 131
L+LS N L+ L L+ T D + NL L++L+LS + +
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439
Query: 132 ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLS---LESCSFLGKLPPSVGNL 188
F LP+L+ L+L GN T +L +L RL L C + +L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499
Query: 189 TQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRN 247
+ + L+ N + + + +L+ + L+++S + S +PS L L+Q ++L +N
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 403 NLNFLEGLDLSRNNL--SGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMID 460
NL L LDLS +++ S L N+S HL LNL +N+ + F L ++D
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 461 LSDNLLQGRIPRS-LVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKF-HGII 518
L+ L+ + +S N L+ L+L ++ + + LP L L LQ N F G I
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466
Query: 519 REPGTDCGFPKLRIIDIS 536
++ + +L I+ +S
Sbjct: 467 QKTNSLQTLGRLEILVLS 484
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 474 LVNCSNLEFLDLGNNQI--SDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLR 531
L N NL LDL ++ I SD L L +L L L N+ + E +C P+L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC--PQLE 403
Query: 532 IIDISSNRFIGKLPSKYFQCWNAMQVVNTS 561
++D++ R K FQ + ++V+N S
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 435 LNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTF 494
+NLQ + FF TF L+ +DL+ L +P LV S L+ L L N+ +
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLC 317
Query: 495 PSWLGALPNLNILILQSNKFHGIIREPGTDC--GFPKLRIIDISSN 538
P+L L ++ N E GT C LR +D+S +
Sbjct: 318 QISASNFPSLTHLSIKGNTKR---LELGTGCLENLENLRELDLSHD 360
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+K+ L+LS N L ++I L S+K LDL++ +++ P + LS+L+ L L
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
LN + P + L++L+ L + S P + NL L L NKIS P
Sbjct: 137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-- 190
Query: 137 FGNLPSLEELDLSGNQLS 154
+LP+L E+ L NQ+S
Sbjct: 191 LASLPNLIEVHLKNNQIS 208
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 112 FIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLS 171
++ NL LE+ D N+I+ P NL + EL+LSGN L +++ L S+K L
Sbjct: 61 YLNNLIGLELKD---NQITDLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLD 113
Query: 172 LESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPS 231
L S P + L+ LQ L L N + P + L +L+ L I + S P
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP- 168
Query: 232 SLRNLTQLSCLDLSRNHFSGGMELDVF-LISLKNLEVLYLSSNRLS 276
L NL++L+ L N S D+ L SL NL ++L +N++S
Sbjct: 169 -LANLSKLTTLKADDNKIS-----DISPLASLPNLIEVHLKNNQIS 208
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 404 LNFLEGLDLSRNNLSGLLP--------------HCLGNIS-----NHLSILNLQHNKFFG 444
LN L GL+L N ++ L P + L N+S + L+L +
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121
Query: 445 TIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNL 504
P G+ L+++ L N + P L +NL++L +GN Q+SD P L L L
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175
Query: 505 NILILQSNKFHGI 517
L NK I
Sbjct: 176 TTLKADDNKISDI 188
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 6/194 (3%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-G 66
KK IPS++ +K LDL SN+LS + L L+ L L+ N+L LP+ I
Sbjct: 26 KKLTAIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFK 82
Query: 67 NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSG 126
L +LE L ++ N V L +L L L + S P +L L L L
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 127 NKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPP-SV 185
N++ F L SL+EL L NQL + LT LK L L++ + L ++P +
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAF 201
Query: 186 GNLTQLQWLGLASN 199
+L +L+ L L N
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
L L L RN L L P +++ L+ L+L +N+ F + L+ + L +N L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 467 QGRIPR-SLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKF----HGII 518
+ R+P + + L+ L L NNQ+ +L L +L LQ N + +GII
Sbjct: 170 K-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII 225
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 47 LKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS 106
+K DLS +++ L S + + LE+L L+ N + L+ L L LS+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 107 SDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG---N 163
S NL LE+LDLS N I F LP+L+EL L NQL SV G
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK---SVPDGIFDR 393
Query: 164 LTSLKRLSLES 174
LTSL+++ L +
Sbjct: 394 LTSLQKIWLHT 404
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 145/353 (41%), Gaps = 42/353 (11%)
Query: 192 QWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSS--LRNLTQLSCLDLSRNHF 249
Q+L L + F+G L +LE L ++ CN G + S + LT L L L N+
Sbjct: 90 QFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 250 SGGMELDVFLISLKNLEVLYLSSNRL-SVHTKATSSTTSQKFGTVGLRSCNLTEFPNF-- 306
++ F ++++ VL L+ N++ S+ + + + F + L S L + +
Sbjct: 142 KK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200
Query: 307 --------LKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPW 358
KN ++ LDLS N + K + + Y + +
Sbjct: 201 GWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS---NSYNMGSSF 256
Query: 359 GNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLS 418
G+ F NF L +T + +S + + + + LE L L++N ++
Sbjct: 257 GHTNFK--DPDNFTFKGLEASGVKTCD--LSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 419 GLLPHCLGNISNHLSILNLQHNKFFGTIP-QTFLGVEWLRMIDLSDNLLQGRIPRSLVNC 477
+ + ++ HL LNL N F G+I + F ++ L ++DLS N ++ +S +
Sbjct: 313 KIDDNAFWGLT-HLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 478 SNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKL 530
NL+ L L NQ+ L +L + L +N + DC P++
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---------DCSCPRI 414
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 11 GGIPSSL-GNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLS 69
G I S + NL KL LDLS N + S L +LKEL L TN+L L+
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395
Query: 70 SLEKLDLSLNVFSGDMPAV 88
SL+K+ L N + P +
Sbjct: 396 SLQKIWLHTNPWDCSCPRI 414
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 118 SLEILDLSGNKISGELPD-FFGNLP--SLEELDLSGNQLSG------------DFSVSTG 162
S+ LDLSGN + FF + ++ L LS + G +F+
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 163 NLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISS 222
+ +K L L + T L+ L LA N + + L L L++S
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 223 CNFSGPIPSSL-RNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRL 275
NF G I S + NL +L LDLS NH D + L NL+ L L +N+L
Sbjct: 333 -NFLGSIDSRMFENLDKLEVLDLSYNHIRALG--DQSFLGLPNLKELALDTNQL 383
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
L NL+K+ L+LS N L ++I L S+K LDL++ +++ P + LS+L+ L L
Sbjct: 87 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 142
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
LN + P + L++L+ L + + P + NL L L NKIS P
Sbjct: 143 DLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP-- 196
Query: 137 FGNLPSLEELDLSGNQLS 154
+LP+L E+ L NQ+S
Sbjct: 197 LASLPNLIEVHLKDNQIS 214
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 112 FIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLS 171
++ NL LE+ D N+I+ P NL + EL+LSGN L +++ L S+K L
Sbjct: 67 YLNNLIGLELKD---NQITDLTP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLD 119
Query: 172 LESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPS 231
L S P + L+ LQ L L N + P + L +L+ L I + + P
Sbjct: 120 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP- 174
Query: 232 SLRNLTQLSCLDLSRNHFSGGMELDVF-LISLKNLEVLYLSSNRLS 276
L NL++L+ L N S D+ L SL NL ++L N++S
Sbjct: 175 -LANLSKLTTLRADDNKIS-----DISPLASLPNLIEVHLKDNQIS 214
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 25/136 (18%)
Query: 401 ICNLNFLEGLDLSRNNLSGLLP--------------HCLGNIS-----NHLSILNLQHNK 441
I LN L GL+L N ++ L P + L N+S + L+L +
Sbjct: 65 IQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 124
Query: 442 FFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGAL 501
P G+ L+++ L N + P L +NL++L +GNNQ++D P L L
Sbjct: 125 ITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANL 178
Query: 502 PNLNILILQSNKFHGI 517
L L NK I
Sbjct: 179 SKLTTLRADDNKISDI 194
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-G 66
K+ +P+ + ++++YL NQ++ P +L +LKEL L +N+L G LP +
Sbjct: 29 KRHASVPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD 85
Query: 67 NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSG 126
+L+ L LDL N + AV L LK L + N ++LP I L L L L
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQ 144
Query: 127 NKISGELPDFFGNLPSLEELDLSGN 151
N++ F L SL L GN
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 31/153 (20%)
Query: 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFS 158
V ++ + +PA I + +IL L N+I+ P F +L +L+EL L NQ
Sbjct: 24 VDCRSKRHASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ------ 75
Query: 159 VSTGNLTSLKRLSLESCSFLGKLPPSV-GNLTQLQWLGLASNNFSGNLPSTI-GNLRSLE 216
LG LP V +LTQL L L +N + LPS + L L+
Sbjct: 76 -------------------LGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLK 115
Query: 217 TLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHF 249
L CN +P + LT L+ L L +N
Sbjct: 116 EL-FMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEE 145
P V +L +LK L L + +L L +LDL N+++ F L L+E
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 146 LDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
L + N+L+ + LT L L+L+
Sbjct: 117 LFMCCNKLT-ELPRGIERLTHLTHLALD 143
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 9/241 (3%)
Query: 35 GEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSS 94
E+PASI + + L+L N + + +L LE L LS N+ L S
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 95 LKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF-FGNLPSLEELDLSG-NQ 152
L L L ++ L L L L N I +P + F +PSL LDL +
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKR 143
Query: 153 LSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNL 212
L + L +L+ L+L C+ K P++ L +L+ L L+ N P + L
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNL--KDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 213 RSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSS 272
SL L + + ++ +L L L+LS N+ + D+F L LE ++L+
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLF-TPLHRLERVHLNH 259
Query: 273 N 273
N
Sbjct: 260 N 260
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 12/241 (4%)
Query: 38 PASIGNLGSLKELDLSTNELSGRLPSSIG-NLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96
PA+ + + EL+ +P+SI N L + S+ V D +L L+
Sbjct: 7 PAACSCSNQASRVICTRRELA-EVPASIPVNTRYLNLQENSIQVIRTD---TFKHLRHLE 62
Query: 97 ALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG 155
L LSK ++ AF G LPSL L+L N+++ F L L EL L N +
Sbjct: 63 ILQLSKNLVRKIEVGAFNG-LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 156 DFSVSTGNLTSLKRLSLESCSFLGKLPPSV-GNLTQLQWLGLASNNFSGNLPSTIGNLRS 214
S + + SL+RL L L + + L L++L L N ++P+ +R
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVR- 179
Query: 215 LETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNR 274
LE L++S P S + LT L L L + +E + F LK+LE L LS N
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAF-DDLKSLEELNLSHNN 237
Query: 275 L 275
L
Sbjct: 238 L 238
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
LG L +L Y+ A+ L +L+ L+L L +P+ + L LE+L+L
Sbjct: 138 LGELKRLEYIS----------EAAFEGLVNLRYLNLGMCNLKD-IPN-LTALVRLEELEL 185
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
S N P L+SL+ L L ++ +L SLE L+LS N + D
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Query: 137 FGNLPSLEELDLSGN 151
F L LE + L+ N
Sbjct: 246 FTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 9/241 (3%)
Query: 35 GEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSS 94
E+PASI + + L+L N + + +L LE L LS N+ L S
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 95 LKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF-FGNLPSLEELDLSG-NQ 152
L L L ++ L L L L N I +P + F +PSL LDL +
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKR 143
Query: 153 LSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNL 212
L + L +L+ L+L C+ K P++ L +L+ L L+ N P + L
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNL--KDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 213 RSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSS 272
SL L + + ++ +L L L+LS N+ + D+F L LE ++L+
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLF-TPLHRLERVHLNH 259
Query: 273 N 273
N
Sbjct: 260 N 260
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 12/241 (4%)
Query: 38 PASIGNLGSLKELDLSTNELSGRLPSSIG-NLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96
PA+ + + EL+ +P+SI N L + S+ V D +L L+
Sbjct: 7 PAACSCSNQASRVICTRRELA-EVPASIPVNTRYLNLQENSIQVIRTD---TFKHLRHLE 62
Query: 97 ALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG 155
L LSK ++ AF G LPSL L+L N+++ F L L EL L N +
Sbjct: 63 ILQLSKNLVRKIEVGAFNG-LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 156 DFSVSTGNLTSLKRLSLESCSFLGKLPPSV-GNLTQLQWLGLASNNFSGNLPSTIGNLRS 214
S + + SL+RL L L + + L L++L L N ++P+ +R
Sbjct: 122 IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVR- 179
Query: 215 LETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNR 274
LE L++S P S + LT L L L + +E + F LK+LE L LS N
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAF-DDLKSLEELNLSHNN 237
Query: 275 L 275
L
Sbjct: 238 L 238
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL 76
LG L +L Y+ A+ L +L+ L+L L +P+ + L LE+L+L
Sbjct: 138 LGELKRLEYIS----------EAAFEGLVNLRYLNLGMCNLKD-IPN-LTALVRLEELEL 185
Query: 77 SLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF 136
S N P L+SL+ L L ++ +L SLE L+LS N + D
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
Query: 137 FGNLPSLEELDLSGN 151
F L LE + L+ N
Sbjct: 246 FTPLHRLERVHLNHN 260
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 410 LDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGR 469
LDLS NNLS L +L L L HN + F+ V LR +DLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 470 IPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCG-FP 528
+ LE L L NN I + + L L L N+ E D P
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 529 KLRIIDISSNRFIGKLP 545
KL ++D+SSN+ + KLP
Sbjct: 164 KLMLLDLSSNK-LKKLP 179
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 30 SNQLSGEIPASIGNLGSLKELDLSTNELSGRL-----PSSIGNLSSLEKLDLSLNVFSGD 84
S Q +P S+ + +L LDLS N LS RL P+ + NL SL LN S +
Sbjct: 26 SKQQLPNVPQSLPSYTAL--LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 85 MPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLE 144
+ NL + L LS + + +L +LE+L L N I + F ++ L+
Sbjct: 83 AFVPVPNL---RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 145 ELDLSGNQLS 154
+L LS NQ+S
Sbjct: 140 KLYLSQNQIS 149
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 9 KTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNL 68
+ P+ L NL L+ LS N L+ + + +L+ LDLS+N L +L
Sbjct: 55 RAEWTPTRLTNLHSLL---LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111
Query: 69 SSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK---TNFSSDLPAFIGNLPSLEILDLS 125
+LE L L N +++ L+ L LS+ + F +L LP L +LDLS
Sbjct: 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171
Query: 126 GNKI 129
NK+
Sbjct: 172 SNKL 175
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 63 SSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEIL 122
S++ L++L L L+ N V L++LK LVL + S L +L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 123 DLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLP 182
+L+ N++ F L +L ELDLS NQL LT LK L L + L +P
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVP 197
Query: 183 PSV-GNLTQLQWLGLASNNFSGNLP 206
V LT LQ++ L N + P
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKL 74
S+L L+ L YL L+ NQL L +LKEL L N+L L++L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 75 DLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELP 134
+L+ N V L++L L LS S L L+ L L N++ +P
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VP 197
Query: 135 D-FFGNLPSLEELDLSGN 151
D F L SL+ + L N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L+ L YL+L+ NQL L +L ELDLS N+L L+ L+ L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAF 112
V L+SL+ + L + P
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L+KL +L+L NQL +L L L L+ N+L+ +L+ L+KL L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGN 139
V L+ LK L L+ S L +L+ L LS N++ F
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 140 LPSLEELDLSGNQL 153
L L+ + L GNQ
Sbjct: 178 LGKLQTITLFGNQF 191
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 6/165 (3%)
Query: 37 IPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96
IPA ++LDL + L+ ++ L+ L L+L N V +L+ L
Sbjct: 33 IPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 97 ALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
L L+ +S +L L+ L L GN++ F L L+EL L+ NQL
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNF 201
+ + LT+L+ LSL + + L +LQ + L N F
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 3/145 (2%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDL S L+ A+ L L L+L N+L +L+ L L L+ N +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEE 145
V +L+ L L L S L L+ L L+ N++ F L +L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 146 LDLSGNQLSGDFSVSTGNLTSLKRL 170
L LS NQL SV G L +L
Sbjct: 160 LSLSTNQLQ---SVPHGAFDRLGKL 181
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%)
Query: 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSL 78
+L++L L L NQL L LKEL L+TN+L + L++L+ L LS
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 79 NVFSGDMPAVIGNLSSLKALVLSKTNF 105
N L L+ + L F
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 80/225 (35%), Gaps = 40/225 (17%)
Query: 48 KELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSS 107
KE+D L +PS I + EKLDL + A L+ L L L +
Sbjct: 17 KEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL 167
+L L L L+ N+++ F +L L++L L GNQL
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS------------ 121
Query: 168 KRLSLESCSFLGKLPPSV-GNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS 226
LP V LT+L+ L L +N L +L+TL +S+
Sbjct: 122 -------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 227 GPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLS 271
+ L +L + L N F E+LYLS
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF-----------DCSRCEILYLS 202
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-GNLSSLEKLDLS 77
+L++L L L++NQL+ +L L +L L N+L LPS + L+ L++L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLN 139
Query: 78 LNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNK 128
N L++L+ L LS S L L+ + L GN+
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L+KL +L+L NQL +L L L L+ N+L+ +L+ L+KL L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGN 139
V L+ LK L L+ S L +L+ L LS N++ F
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 140 LPSLEELDLSGNQL 153
L L+ + L GNQ
Sbjct: 178 LGKLQTITLFGNQF 191
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 6/173 (3%)
Query: 37 IPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96
IPA ++LDL + L+ ++ L+ L L+L N V +L+ L
Sbjct: 33 IPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 97 ALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
L L+ +S +L L+ L L GN++ F L L+EL L+ NQL
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTI 209
+ + LT+L+ LSL + + L +LQ + L N F + T+
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 3/145 (2%)
Query: 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85
LDL S L+ A+ L L L+L N+L +L+ L L L+ N +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEE 145
V +L+ L L L S L L+ L L+ N++ F L +L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 146 LDLSGNQLSGDFSVSTGNLTSLKRL 170
L LS NQL SV G L +L
Sbjct: 160 LSLSTNQLQ---SVPHGAFDRLGKL 181
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%)
Query: 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSL 78
+L++L L L NQL L LKEL L+TN+L + L++L+ L LS
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 79 NVFSGDMPAVIGNLSSLKALVLSKTNF 105
N L L+ + L F
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-GNLSSLEKLDLS 77
+L++L L L++NQL+ +L L +L L N+L LPS + L+ L++L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLN 139
Query: 78 LNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI 129
N L++L+ L LS S L L+ + L GN+
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 79/225 (35%), Gaps = 40/225 (17%)
Query: 48 KELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSS 107
KE+D L +PS I + EKLDL + A L+ L L L +
Sbjct: 17 KEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL 167
+L L L L+ N+++ F +L L++L L GNQL
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS------------ 121
Query: 168 KRLSLESCSFLGKLPPSV-GNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS 226
LP V LT+L+ L L +N L +L+TL +S+
Sbjct: 122 -------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 227 GPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLS 271
+ L +L + L N F E LYLS
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF-----------DCSRCETLYLS 202
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 117/311 (37%), Gaps = 67/311 (21%)
Query: 30 SNQLSGEIPASIGNLGSLKEL------DLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSG 83
N ++PA++ L S +++ DL E+ + +++KL + N
Sbjct: 53 KNSTMRKLPAAL--LDSFRQVELLNLNDLQIEEIDT---YAFAYAHTIQKLYMGFNAIRY 107
Query: 84 DMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSL 143
P V N+ L LVL + + SS N P L L +S N + D F SL
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 144 EELDLSGNQLSG-DFS---------VSTGNLTSL------KRLSLESCSF---------- 177
+ L LS N+L+ D S VS L++L + L S
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227
Query: 178 LGKLPPSVGNLTQLQWL----GLASNNFSGNLPSTIG-----NLRSLETLDIS-----SC 223
L L NLT WL GL + S N I ++ LE L IS +
Sbjct: 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Query: 224 NFSG-PIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSN-----RLSV 277
N G PIP+ L LDLS NH + ++ LE LYL N +LS
Sbjct: 288 NLYGQPIPT-------LKVLDLSHNHL---LHVERNQPQFDRLENLYLDHNSIVTLKLST 337
Query: 278 HTKATSSTTSQ 288
H + T S
Sbjct: 338 HHTLKNLTLSH 348
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
+E LD S N+++ + G ++ L+IL LQHN T L L +DLS N L
Sbjct: 207 VEELDASHNSINVVR----GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260
Query: 467 QGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR-EPGTD 524
+ + V LE L + NN++ + +P L +L L N + R +P D
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 27/157 (17%)
Query: 18 GNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNEL----------------SGRL 61
N KL L +S+N L + SL+ L LS+N L S L
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 197
Query: 62 PSSIGNLSSLEKLDLS---LNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPS 118
S++ ++E+LD S +NV G P + L L L N + A++ N P
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRG--PVNV----ELTILKLQHNNLTD--TAWLLNYPG 249
Query: 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG 155
L +DLS N++ + F + LE L +S N+L
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NNQ+++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 QLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+N + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 88 VIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
V G L L L LS S LP LP+L +LD+S N+++ L L+EL
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 148 LSGNQLSGDFSVSTGNLT---SLKRLSL 172
L GN+L ++ G LT L++LSL
Sbjct: 131 LKGNELK---TLPPGLLTPTPKLEKLSL 155
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NNQ+++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 QLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+N + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 88 VIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
V G L L L LS S LP LP+L +LD+S N+++ L L+EL
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 148 LSGNQLSGDFSVSTGNLT---SLKRLSL 172
L GN+L ++ G LT L++LSL
Sbjct: 131 LKGNELK---TLPPGLLTPTPKLEKLSL 155
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NNQ+++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 QLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+N + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 88 VIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
V G L L L LS S LP LP+L +LD+S N+++ L L+EL
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 148 LSGNQLSGDFSVSTGNLT---SLKRLSL 172
L GN+L ++ G LT L++LSL
Sbjct: 131 LKGNELK---TLPPGLLTPTPKLEKLSL 155
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NNQ+++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 QLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+N + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 88 VIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
V G L L L LS S LP LP+L +LD+S N+++ L L+EL
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 148 LSGNQLSGDFSVSTGNLT---SLKRLSL 172
L GN+L ++ G LT L++LSL
Sbjct: 131 LKGNELK---TLPPGLLTPTPKLEKLSL 155
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI--GNLSSLEKLDLSL 78
S +L+ + N + + L L+ L L N L ++ N+SSLE LD+SL
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 79 NVF-SGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFF 137
N S S+ L LS + + F P +++LDL N+I +P
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIMS-IPKDV 469
Query: 138 GNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
+L +L+EL+++ NQL LTSL+ + L
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 96 KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI-SGELPDFFGNLPSLEELDLSGNQLS 154
KAL LS+ + S I L L +L LS N+I S + F N LE LD+S N+L
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHNRLQ 113
Query: 155 GDFSVSTGNLTSLKRLSLESCSFLGKLP--PSVGNLTQLQWLGLASNNFSGNLPSTIGNL 212
+S + SL+ L L F LP GNLT+L +LGL++ F
Sbjct: 114 N---ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKF----------- 158
Query: 213 RSLETLDISSCNFSGPIPSSLRNLTQLSC--LDLSRNHFSGG 252
R L+ L ++ LSC LDL H GG
Sbjct: 159 RQLDLLPVAH--------------LHLSCILLDLVSYHIKGG 186
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVF 81
K+ LDL +N++ IP + +L +L+EL++++N+L L+SL+ + L N +
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 82 SGDMPAV 88
P +
Sbjct: 510 DCTCPGI 516
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 352 YPVVCPWGNRPFSLDFSSNFLQGPL-PIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGL 410
Y C W L+ SSN L G + PP+ + + NN I I + +L L+ L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQEL 478
Query: 411 DLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWL 456
+++ N L +P + + L + L N + T P EW+
Sbjct: 479 NVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 523
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 403 NLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLS 462
N++ LE LD+S N+L+ + + +LNL N G++ + ++++DL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLH 458
Query: 463 DNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPG 522
+N + IP+ + + L+ L++ +NQ+ L +L + L N +
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW-------- 509
Query: 523 TDCGFPKLRIIDISSNRFIG 542
DC P +R + N+ G
Sbjct: 510 -DCTCPGIRYLSEWINKHSG 528
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 408 EGLDLSRNNLSGLLPHCLGNIS--NHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNL 465
+ L LS+N++S L + +IS + L +L L HN+ FL + L +D+S N
Sbjct: 55 KALSLSQNSISELR---MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 466 LQGRIPRSLVNC---SNLEFLDLGNNQISDTFP--SWLGALPNLNILILQSNKFHGI 517
LQ ++C ++L LDL N D P G L L L L + KF +
Sbjct: 112 LQN------ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLV--NCSNLEFLDLG--- 486
+ LN N F ++ Q ++ L+ + L N L+ +L+ N S+LE LD+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 487 -NNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIG 542
N+ D +W ++ LN L SN G + C PK++++D+ +NR +
Sbjct: 415 LNSHAYDRTCAWAESILVLN---LSSNMLTGSVFR----CLPPKVKVLDLHNNRIMS 464
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 202/503 (40%), Gaps = 85/503 (16%)
Query: 45 GSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNL------SSLKAL 98
SLK+L+LS+N++ P + L L L+ NV G P++ L +S++ L
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN-NVQLG--PSLTEKLCLELANTSIRNL 232
Query: 99 VLSKTNFSSDL-PAFIG-NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
LS + S+ F+G +L +LDLS N ++ D F LP LE L N +
Sbjct: 233 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 292
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQL-----QWLGLASNNFSGNLPSTIGN 211
FS S L +++ L+L+ K S+ +L ++ QW
Sbjct: 293 FSHSLHGLFNVRYLNLKRS--FTKQSISLASLPKIDDFSFQW------------------ 332
Query: 212 LRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKN--LEVLY 269
L+ LE L++ + G + L L L LS + S + +SL + L +L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 392
Query: 270 LSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKI-- 327
L+ N++ S S F +G ++ VLDL N I ++
Sbjct: 393 LTKNKI-------SKIESDAFSWLG-----------------HLEVLDLGLNEIGQELTG 428
Query: 328 PKW-----LLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPR 382
+W + E P + R +L N P P P R
Sbjct: 429 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL---KNVDSSPSPFQPLR 485
Query: 383 TRNYL-ISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHC--------LGNISNHLS 433
L +SNN++ + L LE LDL NNL+ L H L +S HL
Sbjct: 486 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLH 544
Query: 434 ILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCS-NLEFLDLGNNQISD 492
ILNL+ N F + F + L++IDL N L +P S+ N +L+ L+L N I+
Sbjct: 545 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITS 603
Query: 493 TFPSWLG-ALPNLNILILQSNKF 514
G A NL L ++ N F
Sbjct: 604 VEKKVFGPAFRNLTELDMRFNPF 626
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 127/293 (43%), Gaps = 48/293 (16%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
S L +L Y L N + S+ L +++ L+L + + +L+SL K+D
Sbjct: 272 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-----SLASLPKID 326
Query: 76 ----------LSLNVFSGDMPAVIGN----LSSLKALVLSKT-----NFSSDLPAFIGNL 116
LN+ D+P + N L +LK L LS + +++ + +
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 386
Query: 117 PSLEILDLSGNKISGELPDFFGNLPSLEELDLS----GNQLSGDFSVSTGNLTSL----- 167
P L IL+L+ NKIS D F L LE LDL G +L+G N+ +
Sbjct: 387 P-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 445
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227
K L L SF L PS+ L L+ + L + + S PS LR+L LD+S+ N +
Sbjct: 446 KYLQLTRNSF--ALVPSLQRL-MLRRVALKNVDSS---PSPFQPLRNLTILDLSNNNIAN 499
Query: 228 PIPSSLRNLTQLSCLDLSRN-------HFSGGMELDVFLISLKNLEVLYLSSN 273
L L +L LDL N H + G + FL L +L +L L SN
Sbjct: 500 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESN 551
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 26/253 (10%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLP-SSIGNLSSLEKLDLSLN 79
S L L+L+ N++S + LG L+ LDL NE+ L L ++ ++ LS N
Sbjct: 386 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 445
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSS--DLPAFIGNLPSLEILDLSGNKISGELPDFF 137
+ + SL+ L+L + + P+ L +L ILDLS N I+ D
Sbjct: 446 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 505
Query: 138 GNLPSLEELDLSGNQLSGDFSVST--------GNLTSLKRLSLESCSFLGKLPPSV-GNL 188
L LE LDL N L+ + + L+ L L+LES F ++P V +L
Sbjct: 506 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDL 564
Query: 189 TQLQWLGLASNNFSGNLPSTIGNLRSLETLDIS-------SCNFSGPIPSSLRNLTQLSC 241
+L+ + L NN + S N SL++L++ GP + RNLT+
Sbjct: 565 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP---AFRNLTE--- 618
Query: 242 LDLSRNHFSGGME 254
LD+ N F E
Sbjct: 619 LDMRFNPFDCTCE 631
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
L LD+ N +S L P + L +LNLQHN+ +TF L + L N +
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Query: 467 QGRIPRSLVNCSNLEFLDLGNNQISDT 493
Q V NL LDL +N +S T
Sbjct: 115 QKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 32 QLSGEIPASIGNLGSLKELDLSTNELSGRLPSS-IGNLSSLEKLDLSLNVFSGDMPAVIG 90
Q+ ++P +I L+L+ N+L RLP++ S L LD+ N S P +
Sbjct: 23 QVPDDLPTNIT------VLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 75
Query: 91 NLSSLKALVLSK---TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
L LK L L + S AF NL L ++ S KI + F +L LD
Sbjct: 76 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN---NPFVKQKNLITLD 132
Query: 148 LSGNQLSG 155
LS N LS
Sbjct: 133 LSHNGLSS 140
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 9/153 (5%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSS--- 64
K PS L L LDLS+N ++ + L L+ LDL N L+ +
Sbjct: 472 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 531
Query: 65 -----IGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSL 119
+ LS L L+L N F V +L LK + L N ++ + N SL
Sbjct: 532 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 591
Query: 120 EILDLSGNKISGELPDFFG-NLPSLEELDLSGN 151
+ L+L N I+ FG +L ELD+ N
Sbjct: 592 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 424 CLGNISNHLSILNLQHNKFFGTIPQTFLGVEW--LRMIDLSDNLLQGRIPRSLVNCSNLE 481
CL + + L+L +++ T TFLG++W L M+DLS N L S LE
Sbjct: 221 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 280
Query: 482 FLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPG----TDCGFPKLRIID--- 534
+ L N I F L L N+ L L+ + I D F L+ ++
Sbjct: 281 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 340
Query: 535 --------ISSNRFIGKLPSKYFQCWNAMQVVNT 560
I SN F G + KY N+ + T
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNV 80
S+L LD+ N +S P L LK L+L NELS + ++L +L L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 81 FSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG---ELPDFF 137
+L L LS SS L +L+ L LS NKI E D F
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 173
Query: 138 GNLPSLEELDLSGNQL 153
N SL++L+LS NQ+
Sbjct: 174 AN-SSLKKLELSSNQI 188
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLP-SSIGNLSSLEKLDLSLN 79
S L+ L+L+ N +S + LG L+ LDL NE+ +L L ++ ++ LS N
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSS-DL-PAFIGNLPSLEILDLSGNKISGELPDFF 137
+ + + SL+ L+L + + D+ P+ L +L ILDLS N I+ D
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500
Query: 138 GNLPSLEELDLSGNQLS 154
L +LE LD N L+
Sbjct: 501 EGLENLEILDFQHNNLA 517
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 122/299 (40%), Gaps = 30/299 (10%)
Query: 23 LIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFS 82
L L+L N+LS + +L ELDL +N + + N +L KLDLS N S
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 83 GDMPAVIGNLSSLKALVLSKTN---FSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGN 139
L +L+ L+L+K S+ F+GN SL LDLS N + P F
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQT 193
Query: 140 LPSLEELDLSGNQLSGDFSVSTG---NLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGL 196
+ L L L+ QL+ + + TS++ LSL + L S + L+W L
Sbjct: 194 IGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLAT---SESTFSGLKWTNL 250
Query: 197 ASNNFSGNLPSTIGN-----LRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSG 251
+ S N +GN L SL L + N P S L+ L L L R
Sbjct: 251 TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQ 310
Query: 252 GMEL-------DVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKF-GTVGLRSCNLTE 302
+ L D LK LE L + N + ST S F G V L+ +L++
Sbjct: 311 SVSLASHPNIDDFSFQWLKYLEYLNMDDNNI-------PSTKSNTFTGLVSLKYLSLSK 362
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 130/315 (41%), Gaps = 47/315 (14%)
Query: 26 LDLSSNQLSGEIPASIGNLG--SLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSG 83
L L++NQL ++ L +L +LDLS N L S L SL L L N
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 84 DMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF-FGNLPS 142
P LS+L+ L L + AF SL + DF F L
Sbjct: 287 LSPRSFYGLSNLRYLSLKR--------AFTKQSVSL--------ASHPNIDDFSFQWLKY 330
Query: 143 LEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202
LE L++ N + S + L SLK LSL K S+ LT ++ LA +
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLVSLKYLSL------SKTFTSLQTLTNETFVSLAHS--- 381
Query: 203 GNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISL 262
L TL+++ + S + L QL LDL N + + L
Sbjct: 382 -----------PLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR-GL 429
Query: 263 KNLEVLYLSSNR-LSVHTKATSSTTSQK---FGTVGLRSCNLTEFPNFLKNQKNVAVLDL 318
+N+ +YLS N+ L + T + + S + V L++ +++ P + +N+ +LDL
Sbjct: 430 RNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSP--FRPLRNLTILDL 487
Query: 319 SSNRIHGKIPKWLLE 333
S+N I I + LLE
Sbjct: 488 SNNNI-ANINEDLLE 501
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 410 LDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGR 469
LD N++S L P L I L +LNLQHN+ QTF+ L +DL N +
Sbjct: 54 LDAGFNSISKLEPE-LCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI 112
Query: 470 IPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPK 529
N NL LDL +N +S T L NL L+L NK + E G
Sbjct: 113 KSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSS 172
Query: 530 LRIIDISSN 538
LR +D+SSN
Sbjct: 173 LRKLDLSSN 181
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 16/165 (9%)
Query: 383 TRNYLISNNSLIGGIAPWICNLNFLE-GLDLSRNNLSGLLPHCLGNISNHLSILNLQHNK 441
T+N++ + + G W+ L L+ GL+ LSG L NI + L +NK
Sbjct: 389 TKNHI---SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFE----IYLSYNK 441
Query: 442 FFGTIPQTFLGVEWLRMIDLSDNLLQGR--IPRSLVNCSNLEFLDLGNNQISDTFPSWLG 499
+ +F V L+ + L L+ P NL LDL NN I++ L
Sbjct: 442 YLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 500 ALPNLNILILQSNKFHGIIRE--PGTDCGFPK----LRIIDISSN 538
L NL IL Q N + + PG F K L I+++ SN
Sbjct: 502 GLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESN 546
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%)
Query: 421 LPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNL 480
L H ++ +++++LNL HN+ P F L ++D N + P L
Sbjct: 16 LTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 481 EFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREP 521
+ L+L +N++S NL L L SN H I P
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNP 116
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 14 PSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSS--------I 65
PS L L LDLS+N ++ + L +L+ LD N L+ + +
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFL 532
Query: 66 GNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLS 125
LS L L+L N V NL LK++ L N + P + SL L+L
Sbjct: 533 KGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQ 592
Query: 126 GNKISGELPDFFG 138
N I+ D FG
Sbjct: 593 KNLITSVEKDVFG 605
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 47/132 (35%), Gaps = 28/132 (21%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSI--------------------------LNLQHN 440
L LDLS N L P C I ++ L+L +N
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 441 KFFGTIPQTFLGVEW--LRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWL 498
+ T TF G++W L +DLS N L S +L +L L N I P
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Query: 499 GALPNLNILILQ 510
L NL L L+
Sbjct: 293 YGLSNLRYLSLK 304
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 202/503 (40%), Gaps = 85/503 (16%)
Query: 45 GSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNL------SSLKAL 98
SLK+L+LS+N++ P + L L L+ NV G P++ L +S++ L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN-NVQLG--PSLTEKLCLELANTSIRNL 227
Query: 99 VLSKTNFSSDL-PAFIG-NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
LS + S+ F+G +L +LDLS N ++ D F LP LE L N +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQL-----QWLGLASNNFSGNLPSTIGN 211
FS S L +++ L+L+ K S+ +L ++ QW
Sbjct: 288 FSHSLHGLFNVRYLNLKRS--FTKQSISLASLPKIDDFSFQW------------------ 327
Query: 212 LRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKN--LEVLY 269
L+ LE L++ + G + L L L LS + S + +SL + L +L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 270 LSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKI-- 327
L+ N++ S S F +G ++ VLDL N I ++
Sbjct: 388 LTKNKI-------SKIESDAFSWLG-----------------HLEVLDLGLNEIGQELTG 423
Query: 328 PKW-----LLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPR 382
+W + E P + R +L N P P P R
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL---KNVDSSPSPFQPLR 480
Query: 383 TRNYL-ISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHC--------LGNISNHLS 433
L +SNN++ + L LE LDL NNL+ L H L +S HL
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLH 539
Query: 434 ILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCS-NLEFLDLGNNQISD 492
ILNL+ N F + F + L++IDL N L +P S+ N +L+ L+L N I+
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 493 TFPSWLG-ALPNLNILILQSNKF 514
G A NL L ++ N F
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPF 621
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 127/293 (43%), Gaps = 48/293 (16%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
S L +L Y L N + S+ L +++ L+L + + +L+SL K+D
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-----SLASLPKID 321
Query: 76 ----------LSLNVFSGDMPAVIGN----LSSLKALVLSKT-----NFSSDLPAFIGNL 116
LN+ D+P + N L +LK L LS + +++ + +
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 117 PSLEILDLSGNKISGELPDFFGNLPSLEELDLS----GNQLSGDFSVSTGNLTSL----- 167
P L IL+L+ NKIS D F L LE LDL G +L+G N+ +
Sbjct: 382 P-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227
K L L SF L PS+ L L+ + L + + S PS LR+L LD+S+ N +
Sbjct: 441 KYLQLTRNSF--ALVPSLQRL-MLRRVALKNVDSS---PSPFQPLRNLTILDLSNNNIAN 494
Query: 228 PIPSSLRNLTQLSCLDLSRN-------HFSGGMELDVFLISLKNLEVLYLSSN 273
L L +L LDL N H + G + FL L +L +L L SN
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESN 546
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 26/253 (10%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLP-SSIGNLSSLEKLDLSLN 79
S L L+L+ N++S + LG L+ LDL NE+ L L ++ ++ LS N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSS--DLPAFIGNLPSLEILDLSGNKISGELPDFF 137
+ + SL+ L+L + + P+ L +L ILDLS N I+ D
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500
Query: 138 GNLPSLEELDLSGNQLSGDFSVST--------GNLTSLKRLSLESCSFLGKLPPSV-GNL 188
L LE LDL N L+ + + L+ L L+LES F ++P V +L
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDL 559
Query: 189 TQLQWLGLASNNFSGNLPSTIGNLRSLETLDIS-------SCNFSGPIPSSLRNLTQLSC 241
+L+ + L NN + S N SL++L++ GP + RNLT+
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP---AFRNLTE--- 613
Query: 242 LDLSRNHFSGGME 254
LD+ N F E
Sbjct: 614 LDMRFNPFDCTCE 626
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
L LD+ N +S L P + L +LNLQHN+ +TF L + L N +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 467 QGRIPRSLVNCSNLEFLDLGNNQISDT 493
Q V NL LDL +N +S T
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 32 QLSGEIPASIGNLGSLKELDLSTNELSGRLPSS-IGNLSSLEKLDLSLNVFSGDMPAVIG 90
Q+ ++P +I L+L+ N+L RLP++ S L LD+ N S P +
Sbjct: 18 QVPDDLPTNIT------VLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70
Query: 91 NLSSLKALVLSK---TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
L LK L L + S AF NL L ++ S KI + F +L LD
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN---NPFVKQKNLITLD 127
Query: 148 LSGNQLSG 155
LS N LS
Sbjct: 128 LSHNGLSS 135
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 9/153 (5%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSS--- 64
K PS L L LDLS+N ++ + L L+ LDL N L+ +
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526
Query: 65 -----IGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSL 119
+ LS L L+L N F V +L LK + L N ++ + N SL
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 120 EILDLSGNKISGELPDFFG-NLPSLEELDLSGN 151
+ L+L N I+ FG +L ELD+ N
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 424 CLGNISNHLSILNLQHNKFFGTIPQTFLGVEW--LRMIDLSDNLLQGRIPRSLVNCSNLE 481
CL + + L+L +++ T TFLG++W L M+DLS N L S LE
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275
Query: 482 FLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPG----TDCGFPKLRIID--- 534
+ L N I F L L N+ L L+ + I D F L+ ++
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Query: 535 --------ISSNRFIGKLPSKYFQCWNAMQVVNT 560
I SN F G + KY N+ + T
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNV 80
S+L LD+ N +S P L LK L+L NELS + ++L +L L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 81 FSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG---ELPDFF 137
+L L LS SS L +L+ L LS NKI E D F
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168
Query: 138 GNLPSLEELDLSGNQL 153
N SL++L+LS NQ+
Sbjct: 169 AN-SSLKKLELSSNQI 183
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 132/503 (26%), Positives = 202/503 (40%), Gaps = 85/503 (16%)
Query: 45 GSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNL------SSLKAL 98
SLK+L+LS+N++ P + L L L+ NV G P++ L +S++ L
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN-NVQLG--PSLTEKLCLELANTSIRNL 237
Query: 99 VLSKTNFSSDL-PAFIG-NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
LS + S+ F+G +L +LDLS N ++ D F LP LE L N +
Sbjct: 238 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 297
Query: 157 FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQL-----QWLGLASNNFSGNLPSTIGN 211
FS S L +++ L+L+ K S+ +L ++ QW
Sbjct: 298 FSHSLHGLFNVRYLNLKRS--FTKQSISLASLPKIDDFSFQW------------------ 337
Query: 212 LRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKN--LEVLY 269
L+ LE L++ + G + L L L LS + S + +SL + L +L
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 397
Query: 270 LSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKI-- 327
L+ N++ S S F +G ++ VLDL N I ++
Sbjct: 398 LTKNKI-------SKIESDAFSWLG-----------------HLEVLDLGLNEIGQELTG 433
Query: 328 PKW-----LLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPR 382
+W + E P + R +L N P P P R
Sbjct: 434 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL---KNVDSSPSPFQPLR 490
Query: 383 TRNYL-ISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHC--------LGNISNHLS 433
L +SNN++ + L LE LDL NNL+ L H L +S HL
Sbjct: 491 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLH 549
Query: 434 ILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCS-NLEFLDLGNNQISD 492
ILNL+ N F + F + L++IDL N L +P S+ N +L+ L+L N I+
Sbjct: 550 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITS 608
Query: 493 TFPSWLG-ALPNLNILILQSNKF 514
G A NL L ++ N F
Sbjct: 609 VEKKVFGPAFRNLTELDMRFNPF 631
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 127/293 (43%), Gaps = 48/293 (16%)
Query: 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLD 75
S L +L Y L N + S+ L +++ L+L + + +L+SL K+D
Sbjct: 277 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-----SLASLPKID 331
Query: 76 ----------LSLNVFSGDMPAVIGN----LSSLKALVLSKT-----NFSSDLPAFIGNL 116
LN+ D+P + N L +LK L LS + +++ + +
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 391
Query: 117 PSLEILDLSGNKISGELPDFFGNLPSLEELDLS----GNQLSGDFSVSTGNLTSL----- 167
P L IL+L+ NKIS D F L LE LDL G +L+G N+ +
Sbjct: 392 P-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 450
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227
K L L SF L PS+ L L+ + L + + S PS LR+L LD+S+ N +
Sbjct: 451 KYLQLTRNSF--ALVPSLQRL-MLRRVALKNVDSS---PSPFQPLRNLTILDLSNNNIAN 504
Query: 228 PIPSSLRNLTQLSCLDLSRN-------HFSGGMELDVFLISLKNLEVLYLSSN 273
L L +L LDL N H + G + FL L +L +L L SN
Sbjct: 505 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI-YFLKGLSHLHILNLESN 556
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 26/253 (10%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLP-SSIGNLSSLEKLDLSLN 79
S L L+L+ N++S + LG L+ LDL NE+ L L ++ ++ LS N
Sbjct: 391 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 450
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSS--DLPAFIGNLPSLEILDLSGNKISGELPDFF 137
+ + SL+ L+L + + P+ L +L ILDLS N I+ D
Sbjct: 451 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 510
Query: 138 GNLPSLEELDLSGNQLSGDFSVST--------GNLTSLKRLSLESCSFLGKLPPSV-GNL 188
L LE LDL N L+ + + L+ L L+LES F ++P V +L
Sbjct: 511 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDL 569
Query: 189 TQLQWLGLASNNFSGNLPSTIGNLRSLETLDIS-------SCNFSGPIPSSLRNLTQLSC 241
+L+ + L NN + S N SL++L++ GP + RNLT+
Sbjct: 570 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP---AFRNLTE--- 623
Query: 242 LDLSRNHFSGGME 254
LD+ N F E
Sbjct: 624 LDMRFNPFDCTCE 636
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
L LD+ N +S L P + L +LNLQHN+ +TF L + L N +
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 467 QGRIPRSLVNCSNLEFLDLGNNQISDT 493
Q V NL LDL +N +S T
Sbjct: 120 QKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 32 QLSGEIPASIGNLGSLKELDLSTNELSGRLPSS-IGNLSSLEKLDLSLNVFSGDMPAVIG 90
Q+ ++P +I L+L+ N+L RLP++ S L LD+ N S P +
Sbjct: 28 QVPDDLPTNIT------VLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 80
Query: 91 NLSSLKALVLSK---TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
L LK L L + S AF NL L ++ S KI + F +L LD
Sbjct: 81 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN---NPFVKQKNLITLD 137
Query: 148 LSGNQLSG 155
LS N LS
Sbjct: 138 LSHNGLSS 145
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 9/153 (5%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSS--- 64
K PS L L LDLS+N ++ + L L+ LDL N L+ +
Sbjct: 477 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 536
Query: 65 -----IGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSL 119
+ LS L L+L N F V +L LK + L N ++ + N SL
Sbjct: 537 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 596
Query: 120 EILDLSGNKISGELPDFFG-NLPSLEELDLSGN 151
+ L+L N I+ FG +L ELD+ N
Sbjct: 597 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 424 CLGNISNHLSILNLQHNKFFGTIPQTFLGVEW--LRMIDLSDNLLQGRIPRSLVNCSNLE 481
CL + + L+L +++ T TFLG++W L M+DLS N L S LE
Sbjct: 226 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 285
Query: 482 FLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPG----TDCGFPKLRIID--- 534
+ L N I F L L N+ L L+ + I D F L+ ++
Sbjct: 286 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 345
Query: 535 --------ISSNRFIGKLPSKYFQCWNAMQVVNT 560
I SN F G + KY N+ + T
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNV 80
S+L LD+ N +S P L LK L+L NELS + ++L +L L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 81 FSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG---ELPDFF 137
+L L LS SS L +L+ L LS NKI E D F
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 178
Query: 138 GNLPSLEELDLSGNQL 153
N SL++L+LS NQ+
Sbjct: 179 AN-SSLKKLELSSNQI 193
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 22/130 (16%)
Query: 46 SLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK--- 102
+LKEL LS N++S P + +L+ LE+L ++ N NL+ + + LS+
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK--------NLNGIPSACLSRLFL 113
Query: 103 -TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVST 161
N D + I +L +LEIL + NK+ + G L LE LDL GN+++ +T
Sbjct: 114 DNNELRDTDSLI-HLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT-----NT 165
Query: 162 GNLTSLKRLS 171
G LT LK+++
Sbjct: 166 GGLTRLKKVN 175
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF--FGTIPQTFLGVEWLRMIDLSDN 464
L+ L LS N +S L P L +++ L L++ N+ IP L +L +L D
Sbjct: 65 LKELHLSHNQISDLSP--LKDLT-KLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT 121
Query: 465 LLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTD 524
SL++ NLE L + NN++ LG L L +L L N+ I G
Sbjct: 122 -------DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE----ITNTGGL 168
Query: 525 CGFPKLRIIDISSNRFIGKLPSKY 548
K+ ID++ + + + P KY
Sbjct: 169 TRLKKVNWIDLTGQKCVNE-PVKY 191
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 97/255 (38%), Gaps = 56/255 (21%)
Query: 70 SLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI 129
+++KL + N P V N+ L LVL + + SS N P L L +S N +
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 130 SGELPDFFGNLPSLEELDLSGNQLSG-DFS---------VSTGNLTSL------KRLSLE 173
D F SL+ L LS N+L+ D S VS L++L + L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219
Query: 174 SCSF----------LGKLPPSVGNLTQLQWL----GLASNNFSGNLPSTIG-----NLRS 214
S L L NLT WL GL + S N I ++
Sbjct: 220 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 215 LETLDIS-----SCNFSG-PIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVL 268
LE L IS + N G PIP+ L LDLS NH + ++ LE L
Sbjct: 280 LERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHL---LHVERNQPQFDRLENL 329
Query: 269 YLSSN-----RLSVH 278
YL N +LS H
Sbjct: 330 YLDHNSIVTLKLSTH 344
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466
+E LD S N+++ + G ++ L+IL LQHN T L L +DLS N L
Sbjct: 213 VEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNEL 266
Query: 467 QGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR-EPGTD 524
+ + V LE L + NN++ + +P L +L L N + R +P D
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNEL----------------SGRLP 62
N KL L +S+N L + SL+ L LS+N L S L
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204
Query: 63 SSIGNLSSLEKLDLS---LNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSL 119
S++ ++E+LD S +NV G P + L L L N + A++ N P L
Sbjct: 205 STLAIPIAVEELDASHNSINVVRG--PVNV----ELTILKLQHNNLTD--TAWLLNYPGL 256
Query: 120 EILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG 155
+DLS N++ + F + LE L +S N+L
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L L+L RN L+G+ P+ S H+ L L NK + FLG+ L+ ++L D
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQIS-DTFPSWLGALPNLNILILQSNKFHGIIREPG 522
N + +P S + ++L L+L +N + + +W L+ +G
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW-------LRKKSLNG----GA 160
Query: 523 TDCGFP-KLRIIDISSNRFIGKLPSKYFQC 551
CG P K+R + I LP F+C
Sbjct: 161 ARCGAPSKVRDVQIKD------LPHSEFKC 184
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 105 FSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNL 164
SSD G LP L L+L N+++G P+ F ++EL L N++ + L
Sbjct: 44 ISSD--GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 165 TSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGN 204
LK L+L +P S +L L L LASN F+ N
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 131/563 (23%), Positives = 230/563 (40%), Gaps = 95/563 (16%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSL 71
IPS L K LDLS N+++ + +L+ L L ++ ++ + +L SL
Sbjct: 45 SIPSGLTAAMK--SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 72 EKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKIS 130
E LDLS N S + G LSSLK L L + + + + NL +L+ L + +
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 162
Query: 131 GELPDF-FGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE--SCSFLGKLPPSVGN 187
E+ F L SL EL++ L S S ++ + L+L +FL ++ +
Sbjct: 163 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI-- 220
Query: 188 LTQLQWLGLASNNFSGNL--PSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLS 245
L+ +++L L N + P + + S + F G + L+
Sbjct: 221 LSSVRYLELRDTNLARFQFSPLPVDEVSS----PMKKLAFRGSV--------------LT 262
Query: 246 RNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQ--KFGTVGLRSCNLTEF 303
F+ ++L +++ L +E + N L + S S+ K TV +R ++ +F
Sbjct: 263 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 322
Query: 304 PNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPF 363
F ++L+ K+ + +E + V C +
Sbjct: 323 YLFYDLSTVYSLLE--------KVKRITVENSKV--------------FLVPCSFSQHLK 360
Query: 364 SLDF---SSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGL 420
SL+F S N + YL NS G P L+ L LS+N+L +
Sbjct: 361 SLEFLDLSENLM----------VEEYL--KNSACKGAWP------SLQTLVLSQNHLRSM 402
Query: 421 LP--HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD---NLLQGRIPRSLV 475
L + N L+ L++ N F +P + E +R ++LS +++ IP++
Sbjct: 403 QKTGEILLTLKN-LTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT-- 458
Query: 476 NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDI 535
LE LD+ NN + D+F + LP L L + NK + P FP L ++ I
Sbjct: 459 ----LEVLDVSNNNL-DSFSLF---LPRLQELYISRNKLKTL---PDASL-FPVLLVMKI 506
Query: 536 SSNRFIGKLPSKYFQCWNAMQVV 558
+SN+ + +P F ++Q +
Sbjct: 507 ASNQ-LKSVPDGIFDRLTSLQKI 528
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 142/340 (41%), Gaps = 36/340 (10%)
Query: 9 KTGGIPSSLGNLSKLIYLDLSSNQLSGEIPA-SIGNLGSLKELDLSTNELSGRLPSSIGN 67
+T G+ S NL+ L L + + + EI L SL EL++ L S+ +
Sbjct: 137 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 196
Query: 68 LSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS----SDLPAFIGNLPSLEILD 123
+ + L L L+ + + LSS++ L L TN + S LP + P ++ L
Sbjct: 197 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP-MKKLA 255
Query: 124 LSGNKISGE-------LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS---------L 167
G+ ++ E L + L +E D + N L GDF+ S ++ S +
Sbjct: 256 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTI 314
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227
+RL + L L +++ + + ++ S +L+SLE LD+S +
Sbjct: 315 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE---NL 371
Query: 228 PIPSSLRNLT------QLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKA 281
+ L+N L L LS+NH + L++LKNL L +S N + H
Sbjct: 372 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN--TFHPMP 429
Query: 282 TSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSN 321
S +K + L S + + + + VLD+S+N
Sbjct: 430 DSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNN 467
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDL-SL 78
L+ L L+L N+L+ + L LKEL L N + + + SL +LDL L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 79 NVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFG 138
S LS+L+ L L+ N ++P L L+ LDLSGN +S P F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQ 228
Query: 139 NLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
L L++L + +Q+ + NL SL ++L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRL---- 170
+L LEIL LS N I F L +L L+L N+L+ + + L+ LK L
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 171 ----SLESCSFLGKLPP----SVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISS 222
S+ S +F ++P +G L +L ++ + F G L +L L+++
Sbjct: 146 NPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGA--FEG--------LSNLRYLNLAM 194
Query: 223 CNFSGPIPSSLRNLTQLSCLDLSRNHFSG 251
CN IP +L L +L LDLS NH S
Sbjct: 195 CNLR-EIP-NLTPLIKLDELDLSGNHLSA 221
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L KL LDLS N LS P S L L++L + +++ ++ NL SL +++L+ N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 131/563 (23%), Positives = 229/563 (40%), Gaps = 95/563 (16%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSL 71
IPS L K LDLS N+++ + +L+ L L ++ ++ + +L SL
Sbjct: 19 SIPSGLTAAMK--SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 72 EKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKIS 130
E LDLS N S + G LSSLK L L + + + + NL +L+ L + +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 131 GELPDF-FGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE--SCSFLGKLPPSVGN 187
E+ F L SL EL++ L S S ++ + L+L +FL ++ +
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI-- 194
Query: 188 LTQLQWLGLASNNFSGNL--PSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLS 245
L+ +++L L N + P + + S + F G + L+
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSS----PMKKLAFRGSV--------------LT 236
Query: 246 RNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQ--KFGTVGLRSCNLTEF 303
F+ ++L +++ L +E + N L + S S+ K TV +R ++ +F
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296
Query: 304 PNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQXXXXXXXXXXXXTGLDQYPVVCPWGNRPF 363
F ++L+ K+ + +E + V C +
Sbjct: 297 YLFYDLSTVYSLLE--------KVKRITVENSKV--------------FLVPCSFSQHLK 334
Query: 364 SLDF---SSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGL 420
SL+F S N + YL NS G P L+ L LS+N+L +
Sbjct: 335 SLEFLDLSENLM----------VEEYL--KNSACKGAWP------SLQTLVLSQNHLRSM 376
Query: 421 LP--HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD---NLLQGRIPRSLV 475
L + N L+ L++ N F +P + E +R ++LS +++ IP++
Sbjct: 377 QKTGEILLTLKN-LTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT-- 432
Query: 476 NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDI 535
LE LD+ NN + D+F + LP L L + NK + P FP L ++ I
Sbjct: 433 ----LEVLDVSNNNL-DSFSLF---LPRLQELYISRNKLKTL---PDASL-FPVLLVMKI 480
Query: 536 SSNRFIGKLPSKYFQCWNAMQVV 558
S N+ + +P F ++Q +
Sbjct: 481 SRNQ-LKSVPDGIFDRLTSLQKI 502
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 143/342 (41%), Gaps = 36/342 (10%)
Query: 9 KTGGIPSSLGNLSKLIYLDLSSNQLSGEIPA-SIGNLGSLKELDLSTNELSGRLPSSIGN 67
+T G+ S NL+ L L + + + EI L SL EL++ L S+ +
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170
Query: 68 LSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS----SDLPAFIGNLPSLEILD 123
+ + L L L+ + + LSS++ L L TN + S LP + P ++ L
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP-MKKLA 229
Query: 124 LSGNKISGE-------LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS---------L 167
G+ ++ E L + L +E D + N L GDF+ S ++ S +
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTI 288
Query: 168 KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227
+RL + L L +++ + + ++ S +L+SLE LD+S +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE---NL 345
Query: 228 PIPSSLRNLT------QLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKA 281
+ L+N L L LS+NH + L++LKNL L +S N + H
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN--TFHPMP 403
Query: 282 TSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRI 323
S +K + L S + + + + VLD+S+N +
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNL 443
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 32 QLSGEIP------ASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSG-- 83
+L G IP A++ L + K L LSTN + SS+ + +L L L N+
Sbjct: 30 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIE 87
Query: 84 DMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS--GELPDFFGNLP 141
++ AV +L+ L +S +S + I L +L +L +S NKI+ GE+ D L
Sbjct: 88 NLDAVA---DTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALD 141
Query: 142 SLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
LE+L L+GN L D+ N TS R+ +
Sbjct: 142 KLEDLLLAGNPLYNDY--KENNATSEYRIEV 170
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 32 QLSGEIP------ASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSG-- 83
+L G IP A++ L + K L LSTN + SS+ + +L L L N+
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIE 86
Query: 84 DMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS--GELPDFFGNLP 141
++ AV +L+ L +S +S + I L +L +L +S NKI+ GE+ D L
Sbjct: 87 NLDAVA---DTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALD 140
Query: 142 SLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
LE+L L+GN L D+ N TS R+ +
Sbjct: 141 KLEDLLLAGNPLYNDY--KENNATSEYRIEV 169
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NN +++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+N+ + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA--GLLNGLENLD 175
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 DLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 88 VIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147
V G L L L LS S LP LP+L +LD+S N+++ L L+EL
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 148 LSGNQLSGDFSVSTGNLT---SLKRLSL 172
L GN+L ++ G LT L++LSL
Sbjct: 131 LKGNELK---TLPPGLLTPTPKLEKLSL 155
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NN +++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+NN + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NN +++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+NN + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIG 114
+ ++PA ++ L +L L+L + + + F G
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NN +++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+NN + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 77 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NN +++ L L NL+ L+LQ N + I +
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 190
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+NN + LP+ G L LE LD
Sbjct: 134 G-NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 176
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 160 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 195
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD 463
L L LDLS N L L LG L++L++ N+ G+ L+ + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 464 NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIR 519
N L+ P L LE L L NN +++ L L NL+ L+LQ N + I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 114 GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLE 173
G LP L LDLS N++ LP LP+L LD+S N+L+ + L L+ L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 174 SCSFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLD 219
+ L LPP + T +L+ L LA+NN + LP+ G L LE LD
Sbjct: 133 G-NELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L L LD+S N+L+ ++ LG L+EL L NEL P + LEKL L+ N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 80 VFSGDMPA-VIGNLSSLKALVLSKTNFSSDLPAFIGN 115
+ ++PA ++ L +L L+L + + + F G+
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGN-LSS 70
GIP+ + YLDL +N L L SL +L L N+L LP+ + N L+S
Sbjct: 25 GIPA------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTS 77
Query: 71 LEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS 130
L L+LS N V L+ LK L L+ S L L+ L L N++
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Query: 131 GELPDFFGNLPSLEELDLSGN 151
F L SL+ + L N
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDN 158
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 58/149 (38%), Gaps = 2/149 (1%)
Query: 59 GRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPS 118
GR G + LDL N V L+SL L L S L S
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFL 178
L L+LS N++ F L L+EL L+ NQL LT LK L L + L
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQL 136
Query: 179 GKLPPSV-GNLTQLQWLGLASNNFSGNLP 206
+P V LT LQ++ L N + P
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
L+ L YL+LS+NQL L LKEL L+TN+L L+ L+ L L N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 80 VFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAF 112
V L+SL+ + L + P
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 167
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 50 LDLSTNELSGRLPSSI-GNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSD 108
LDL TN L LP+ + L+SL +L L N V L+SL L LS S
Sbjct: 33 LDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 109 LPAFIGNLPSLEILDLSGNKISGELPD-FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL 167
L L+ L L+ N++ LPD F L L++L L NQL LTSL
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 168 KRLSLE 173
+ + L
Sbjct: 151 QYIWLH 156
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-GNLSSLEKLDLSL 78
L+ L L L N+L L SL L+LSTN+L LP+ + L+ L++L L+
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNT 109
Query: 79 NVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELP 134
N V L+ LK L L + S L SL+ + L N P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 47 LKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS 106
+ EL L N+ + +P + N L +DLS N S N++ L L+LS
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 107 SDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156
P L SL +L L GN IS F +L +L L + N L D
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 40/96 (41%)
Query: 13 IPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLE 72
+P L N L +DLS+N++S S N+ L L LS N L P + L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 73 KLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSD 108
L L N S +LS+L L + D
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 375 PLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSI 434
P IP T YL N + + + N L +DLS N +S L N++ L++
Sbjct: 26 PKGIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83
Query: 435 LNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQI-SDT 493
+ L +N+ P+TF G++ LR++ L N + + + S L L +G N + D
Sbjct: 84 I-LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142
Query: 494 FPSWLGALPNLNILILQSNKFHGIIREPG-TDCGFPKLRIIDISSNRFIGKLPSKYFQC 551
WL S+ +EPG C P +++ + PSK F C
Sbjct: 143 NMQWL------------SDWVKSEYKEPGIARCAGP-----GEMADKLLLTTPSKKFTC 184
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 17/203 (8%)
Query: 82 SGDMPAVIGNLS-SLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNL 140
SG + ++ L+ ++K+L LS + + + +L+ L L+ N I+ D F +L
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 141 PSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVG------NLTQLQWL 194
SLE LDLS N LS S L+SL L+L LG ++G +LT+LQ L
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL-----LGNPYKTLGETSLFSHLTKLQIL 154
Query: 195 GLAS-NNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLS-RNHFSGG 252
+ + + F+ L LE L+I + + P SL+++ +S L L + H
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI--- 211
Query: 253 MELDVFLISLKNLEVLYLSSNRL 275
+ L++F+ ++E L L L
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDL 234
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSL 71
IPS L K LDLS+N+++ + + +L+ L L++N ++ S +L SL
Sbjct: 45 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 72 EKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKIS 130
E LDLS N S + LSSL L L + + + +L L+IL +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162
Query: 131 GEL--PDFFGNLPSLEELDLSGNQL 153
++ DF G L LEEL++ + L
Sbjct: 163 TKIQRKDFAG-LTFLEELEIDASDL 186
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 16/194 (8%)
Query: 90 GNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLS 149
G ++K+L LS + + + +L+ L L+ N I+ D F +L SLE LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 150 GNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVG------NLTQLQWLGLAS-NNFS 202
N LS S L+SL L+L LG ++G +LT+LQ L + + + F+
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNL-----LGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 137
Query: 203 GNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLS-RNHFSGGMELDVFLIS 261
L LE L+I + + P SL+++ +S L L + H + L++F+
Sbjct: 138 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---LLLEIFVDV 194
Query: 262 LKNLEVLYLSSNRL 275
++E L L L
Sbjct: 195 TSSVECLELRDTDL 208
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSL 71
IPS L K LDLS+N+++ + + +L+ L L++N ++ S +L SL
Sbjct: 19 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 72 EKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKIS 130
E LDLS N S + LSSL L L + + + +L L+IL +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 136
Query: 131 GEL--PDFFGNLPSLEELDLSGNQLSG 155
++ DF G L LEEL++ + L
Sbjct: 137 TKIQRKDFAG-LTFLEELEIDASDLQS 162
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 446 IPQTFLGVEWLRMIDLSDNLLQGRIPRS---LVNC------SNLEFLDLGNNQISDTF-- 494
IP+ +L + + L++ + + + S LV C +LE+LDL N + + +
Sbjct: 293 IPRFYLFYDLSTLYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLK 352
Query: 495 -PSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRF 540
+ A P+L LIL+ N + + T L IDIS N F
Sbjct: 353 NSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSF 399
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 19 NLSKLIYLDLSSNQLSGEI---PASIGNLGSLKELDLSTNELSG--RLPSSIGNLSSLEK 73
+L L YLDLS N + E A SL+ L L N L+ + ++ L +L
Sbjct: 332 HLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTN 391
Query: 74 LDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSD---LPAFIGNL-------------- 116
+D+S N F MP +K L LS T S +P + L
Sbjct: 392 IDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNL 450
Query: 117 PSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG---NLTSLKRLSLE 173
P L+ L +S NK+ LPD LP L L +S NQL SV G LTSL+++ L
Sbjct: 451 PQLKELYISRNKLMT-LPD-ASLLPMLLVLKISRNQLK---SVPDGIFDRLTSLQKIWLH 505
Query: 174 S 174
+
Sbjct: 506 T 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 23 LIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFS 82
L L L+ N L+ E+PA I NL +L+ LDLS N L+ LP+ +G+ L+ N+ +
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 83 GDMPAVIGNLSSLKAL 98
+P GNL +L+ L
Sbjct: 307 T-LPWEFGNLCNLQFL 321
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 32/113 (28%)
Query: 67 NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSG 126
+LS+L+ ++S N+F D L L L+ N ++LPA I NL +L +LDLS
Sbjct: 230 DLSNLQIFNISANIFKYDF---------LTRLYLN-GNSLTELPAEIKNLSNLRVLDLSH 279
Query: 127 NKISG----------------------ELPDFFGNLPSLEELDLSGNQLSGDF 157
N+++ LP FGNL +L+ L + GN L F
Sbjct: 280 NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 13 IPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLE 72
+P+ + NLS L LDLS N+L+ +PA +G+ LK N ++ LP GNL +L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQ 319
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSG 150
+LS+L+ +S F D L L L+GN ++ ELP NL +L LDLS
Sbjct: 230 DLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279
Query: 151 NQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASN 199
N+L+ G+ LK + + LP GNL LQ+LG+ N
Sbjct: 280 NRLTS-LPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 300 LTEFPNFLKNQKNVAVLDLSSNRI 323
LTE P +KN N+ VLDLS NR+
Sbjct: 259 LTELPAEIKNLSNLRVLDLSHNRL 282
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 113/269 (42%), Gaps = 35/269 (13%)
Query: 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI 65
L + GIPS+ YL+L N + + +L L+ L L N + +
Sbjct: 66 LSEVPQGIPSNTR------YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119
Query: 66 GNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGN-LPSLEILDL 124
L+SL L+L N + LS L+ L L + N +P++ N +PSL LDL
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDL 178
Query: 125 SGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPS 184
G L LE + G F L +LK L+L C+ K P+
Sbjct: 179 -------------GELKKLEYIS------EGAFE----GLFNLKYLNLGMCNI--KDMPN 213
Query: 185 VGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDL 244
+ L L+ L ++ N+F P + L SL+ L + + S ++ L L L+L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Query: 245 SRNHFSGGMELDVFLISLKNLEVLYLSSN 273
+ N+ S + D+F L+ L L+L N
Sbjct: 274 AHNNLS-SLPHDLF-TPLRYLVELHLHHN 300
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 89/216 (41%), Gaps = 21/216 (9%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174
NL +L L L NKIS P F L LE L LS NQL L L+ E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE- 132
Query: 175 CSFLGKLPPSVGN-LTQLQWLGLASNNF--SGNLPSTIGNLRSLETLDISSCNFSGPIPS 231
+ K+ SV N L Q+ + L +N SG ++ L + I+ N + IP
Sbjct: 133 ---ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ 188
Query: 232 SL-RNLTQLSCLDLSRNHFSGGMELDVFLISLK---NLEVLYLSSNRLSVHTKATSSTTS 287
L +LT+L H G V SLK NL L LS N +S + + T
Sbjct: 189 GLPPSLTEL--------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 288 QKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRI 323
+ L + L + P L + K + V+ L +N I
Sbjct: 241 H-LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 456 LRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFH 515
LR++ SD L+ ++P+ L + LDL NN+I++ L NL+ LIL +NK
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 516 GIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQV 557
I PG KL + +S N+ + +LP K + ++V
Sbjct: 90 KI--SPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV 128
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 32/166 (19%)
Query: 14 PSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEK 73
P + L KL L LS NQL E+P + +L+EL + NE++ S L+ +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 74 LDLSLNVF--SGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS- 130
++L N SG + L + ++ TN ++ +P G PSL L L GNKI+
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITK 206
Query: 131 ------------GELPDFF-----------GNLPSLEELDLSGNQL 153
+L F N P L EL L+ N+L
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 89/216 (41%), Gaps = 21/216 (9%)
Query: 115 NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174
NL +L L L NKIS P F L LE L LS NQL L L+ E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE- 132
Query: 175 CSFLGKLPPSVGN-LTQLQWLGLASNNF--SGNLPSTIGNLRSLETLDISSCNFSGPIPS 231
+ K+ SV N L Q+ + L +N SG ++ L + I+ N + IP
Sbjct: 133 ---ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ 188
Query: 232 SL-RNLTQLSCLDLSRNHFSGGMELDVFLISLK---NLEVLYLSSNRLSVHTKATSSTTS 287
L +LT+L H G V SLK NL L LS N +S + + T
Sbjct: 189 GLPPSLTEL--------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 288 QKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRI 323
+ L + L + P L + K + V+ L +N I
Sbjct: 241 H-LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 456 LRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFH 515
LR++ SD L+ ++P+ L + LDL NN+I++ L NL+ LIL +NK
Sbjct: 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 516 GIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQV 557
I PG KL + +S N+ + +LP K + ++V
Sbjct: 90 KI--SPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV 128
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 32/166 (19%)
Query: 14 PSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEK 73
P + L KL L LS NQL E+P + +L+EL + NE++ S L+ +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 74 LDLSLNVF--SGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS- 130
++L N SG + L + ++ TN ++ +P G PSL L L GNKI+
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKITK 206
Query: 131 ------------GELPDFF-----------GNLPSLEELDLSGNQL 153
+L F N P L EL L+ N+L
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 52/132 (39%)
Query: 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKL 74
S+L L+ L YL L+ NQL L +LKEL L N+L L++L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 75 DLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELP 134
L N V L++L L L S L L+ L L+ N++
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 135 DFFGNLPSLEEL 146
F L SL +
Sbjct: 199 GVFDRLTSLTHI 210
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Query: 113 IGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
I LP++ L L GNK+ L +L L L+GNQL + LT+LK L L
Sbjct: 59 IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 173 ESCSFLGKLPPSV-GNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPS 231
+ L LP V LT L +L L N L +L LD+ +
Sbjct: 117 VE-NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 232 SLRNLTQLSCLDLSRNHF 249
LTQL L L+ N
Sbjct: 176 VFDKLTQLKQLSLNDNQL 193
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166
D+ + + P+L+IL+LSGN++ E D L LEEL L GN LS F + +++
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLSDTFRDQSTYISA 245
Query: 167 LKRLSLESCSFLG-KLPPSVG 186
++ + G +LPP +
Sbjct: 246 IRERFPKLLRLDGHELPPPIA 266
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 69 SSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNK 128
SS +L+L N V L+ L L LS+ S L L IL L NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 129 ISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG---NLTSLKRLSLES 174
+ F L L+EL L NQL SV G LTSL+++ L +
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHT 133
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%)
Query: 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSL 78
L+KL L L N+L L LKEL L TN+L L+SL+K+ L
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133
Query: 79 NVFSGDMPAV 88
N + P +
Sbjct: 134 NPWDCSCPRI 143
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 404 LNFLEGLDLSRN-NLSGLLP---HCLGNISN-HLSILNLQHNKFFGTIPQTFLGVEWLRM 458
L LE LDLS N L + P H LG + HL LQ G P F G+ L+
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE---LG--PGLFRGLAALQY 133
Query: 459 IDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGII 518
+ L DN LQ + + NL L L N+IS L +L+ L+L N+ +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 519 REPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVN 559
D G +L + + +N + LP++ A+Q +
Sbjct: 194 PHAFRDLG--RLMTLYLFANN-LSALPTEALAPLRALQYLR 231
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 62/160 (38%), Gaps = 3/160 (1%)
Query: 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGN-QLSGDFSVSTGNLTSLKRLSLESCSF 177
L IL L N ++ F L LE+LDLS N QL + L L L L+ C
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 178 LGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLT 237
P L LQ+L L N T +L +L L + S + R L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 238 QLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSV 277
L L L +N + + F L L LYL +N LS
Sbjct: 178 SLDRLLLHQNRVA-HVHPHAFR-DLGRLMTLYLFANNLSA 215
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 4/120 (3%)
Query: 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNL-LQGRIPRSLVNCSNLEFLDLGNNQI 490
L+IL L N F G+ L +DLSDN L+ P + L L L +
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 491 SDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQ 550
+ P L L L LQ N + + D G L + + NR I +P + F+
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--NLTHLFLHGNR-ISSVPERAFR 174
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 404 LNFLEGLDLSRN-NLSGLLP---HCLGNISN-HLSILNLQHNKFFGTIPQTFLGVEWLRM 458
L LE LDLS N L + P H LG + HL LQ G P F G+ L+
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE---LG--PGLFRGLAALQY 132
Query: 459 IDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGII 518
+ L DN LQ + + NL L L N+IS L +L+ L+L N+ +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 519 REPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVN 559
D G +L + + +N + LP++ A+Q +
Sbjct: 193 PHAFRDLG--RLMTLYLFANN-LSALPTEALAPLRALQYLR 230
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 62/160 (38%), Gaps = 3/160 (1%)
Query: 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGN-QLSGDFSVSTGNLTSLKRLSLESCSF 177
L IL L N ++ F L LE+LDLS N QL + L L L L+ C
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 178 LGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLT 237
P L LQ+L L N T +L +L L + S + R L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Query: 238 QLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSV 277
L L L +N + + F L L LYL +N LS
Sbjct: 177 SLDRLLLHQNRVA-HVHPHAFR-DLGRLMTLYLFANNLSA 214
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 4/120 (3%)
Query: 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNL-LQGRIPRSLVNCSNLEFLDLGNNQI 490
L+IL L N F G+ L +DLSDN L+ P + L L L +
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 491 SDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQ 550
+ P L L L LQ N + + D G L + + NR I +P + F+
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--NLTHLFLHGNR-ISSVPERAFR 173
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 107 SDLPAFI-GNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG--- 162
++P+ + +L +LE ++ NK+ FG +P L++L+L+ NQL SV G
Sbjct: 159 EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK---SVPDGIFD 215
Query: 163 NLTSLKRLSLES 174
LTSL+++ L +
Sbjct: 216 RLTSLQKIWLHT 227
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 6 LKKKTGGIPSSL-GNLSKLIYLDLSSNQLSGEIPASI-GNLGSLKELDLSTNELSGRLPS 63
L+ +PS L +L L ++ SN+L ++P I G + LK+L+L++N+L
Sbjct: 154 LRANIEEMPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDG 212
Query: 64 SIGNLSSLEKLDLSLNVFSGDMPAV 88
L+SL+K+ L N + P +
Sbjct: 213 IFDRLTSLQKIWLHTNPWDCSCPRI 237
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 36 EIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95
EIP ++ ++ E+ L N + P + L ++DLS N S P L SL
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 96 KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG 155
+LVL + + L SL++L L+ NKI+ D F +L +L L L N+L
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ- 141
Query: 156 DFSVSTGNLTSLKRLS 171
+++ G + L+ +
Sbjct: 142 --TIAKGTFSPLRAIQ 155
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 26/160 (16%)
Query: 427 NISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486
N+ ++ + L+ N P F + LR IDLS+N + P + +L L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 487 NNQISDTFPSWLGA------------------------LPNLNILILQSNKFHGIIREPG 522
N+I++ S L NLN+L L NK I + G
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--G 146
Query: 523 TDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTSG 562
T ++ + ++ N FI K+ + + TSG
Sbjct: 147 TFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSG 186
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 36 EIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95
EIP ++ ++ E+ L N + P + L ++DLS N S P L SL
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 96 KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG 155
+LVL + + L SL++L L+ NKI+ D F +L +L L L N+L
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ- 141
Query: 156 DFSVSTGNLTSLKRLS 171
+++ G + L+ +
Sbjct: 142 --TIAKGTFSPLRAIQ 155
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 26/160 (16%)
Query: 427 NISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486
N+ ++ + L+ N P F + LR IDLS+N + P + +L L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 487 NNQISDTFPSWLGA------------------------LPNLNILILQSNKFHGIIREPG 522
N+I++ S L NLN+L L NK I + G
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK--G 146
Query: 523 TDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTSG 562
T ++ + ++ N FI K+ + + TSG
Sbjct: 147 TFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSG 186
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 32/182 (17%)
Query: 113 IGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
I LP+L L+LS N+I+ P + LP++ +L L+GN+L+ ++ NL +L L L
Sbjct: 62 IQYLPNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFL 117
Query: 173 ESCSFLGKLPPS--------------------VGNLTQLQWLGLASNNFSGNLPSTIGNL 212
+ + +L QL+ L L +N + + + L
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRL 175
Query: 213 RSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSS 272
L+TL + S +P L LT+L L LS+NH S L LKNL+VL L S
Sbjct: 176 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFS 229
Query: 273 NR 274
Sbjct: 230 QE 231
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Query: 30 SNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-GNLSSLEKLDLSLNVFSGDMPAV 88
SNQ +IP I + EL L+ NE + + I L L K++ S N +
Sbjct: 19 SNQKLNKIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76
Query: 89 IGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDL 148
S + ++L+ + L SL+ L L N+I+ D F L S+ L L
Sbjct: 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136
Query: 149 SGNQLSGDFSVSTGNLTSLKRLS 171
NQ++ +V+ G +L LS
Sbjct: 137 YDNQIT---TVAPGAFDTLHSLS 156
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%)
Query: 116 LPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESC 175
LP L ++ S NKI+ F + E+ L+ N+L L SLK L L S
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
Query: 176 SFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDI 220
S L+ ++ L L N + P L SL TL++
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 437 LQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPS 496
L N+ + F G+E L+ + L N + S + S++ L L +NQI+ P
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Query: 497 WLGALPNLNILILQSNKFH 515
L +L+ L L +N F+
Sbjct: 148 AFDTLHSLSTLNLLANPFN 166
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 47 LKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS 106
+KELDLS N LS + + + LE L+LS NV + + +LS+L+ L L+ N+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN-NNYV 92
Query: 107 SDLPAFIGNLPSLEILDLSGNKIS 130
+L +G PS+E L + N IS
Sbjct: 93 QEL--LVG--PSIETLHAANNNIS 112
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166
D+ + + P+L+IL+LSGN++ E D L LEEL L GN L F + +++
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245
Query: 167 LKRLSLESCSFLG-KLPPSVG 186
++ + G +LPP +
Sbjct: 246 IRERFPKLLRLDGHELPPPIA 266
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 47 LKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFS 106
+KELDLS N LS + + + LE L+LS NV + + +LS+L+ L L+ N+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN-NNYV 92
Query: 107 SDLPAFIGNLPSLEILDLSGNKIS 130
+L +G PS+E L + N IS
Sbjct: 93 QEL--LVG--PSIETLHAANNNIS 112
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246
+L QL+ L L +N + + + L L+TL + S +P L LT+L L LS+
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 247 NHFSGGMELDVFLISLKNLEVLYLSSNR 274
NH S L LKNL+VL L S
Sbjct: 188 NHISDLRA----LAGLKNLDVLELFSQE 211
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246
+L QL+ L L +N + + + L L+TL + S +P L LT+L L LS+
Sbjct: 130 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 185
Query: 247 NHFSGGMELDVFLISLKNLEVLYLSSNR 274
NH S L LKNL+VL L S
Sbjct: 186 NHISDLRA----LAGLKNLDVLELFSQE 209
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 113 IGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
I LP++ L L+GNK++ P NL +L L L N++ S+ L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121
Query: 173 ESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSS 232
S + L +L QL+ L L +N + + + L L+TL + S +P
Sbjct: 122 NGISDINGLV----HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 233 LRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNR 274
L LT+L L LS+NH S L LKNL+VL L S
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQE 211
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166
D+ + + P+L+IL+LSGN++ E D L LEEL L GN L F + +++
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245
Query: 167 LKRLSLESCSFLG-KLPPSVG 186
++ + G +LPP +
Sbjct: 246 IRERFPKLLRLDGHELPPPIA 266
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166
D+ + + P+L+IL+LSGN++ E D L LEEL L GN L F + +++
Sbjct: 181 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 239
Query: 167 LKRLSLESCSFLG-KLPPSVG 186
++ + G +LPP +
Sbjct: 240 IRERFPKLLRLDGHELPPPIA 260
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246
+L QL+ L L +N + + + L L+TL + S +P L LT+L L LS+
Sbjct: 127 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 182
Query: 247 NHFSGGMELDVFLISLKNLEVLYLSSNR 274
NH S L LKNL+VL L S
Sbjct: 183 NHISDLRA----LAGLKNLDVLELFSQE 206
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246
+L QL+ L L +N + + + L L+TL + S +P L LT+L L LS+
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 247 NHFSGGMELDVFLISLKNLEVLYLSSNR 274
NH S L LKNL+VL L S
Sbjct: 206 NHISDLRA----LAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246
+L QL+ L L +N + + + L L+TL + S +P L LT+L L LS+
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 247 NHFSGGMELDVFLISLKNLEVLYLSSNR 274
NH S L LKNL+VL L S
Sbjct: 206 NHISDLRA----LAGLKNLDVLELFSQE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246
+L QL+ L L +N + + + L L+TL + S +P L LT+L L LS+
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 247 NHFSGGMELDVFLISLKNLEVLYLSSNR 274
NH S L LKNL+VL L S
Sbjct: 206 NHISDLRA----LAGLKNLDVLELFSQE 229
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 108 DLPAFIGNLPSLEILDLSGNKISGELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166
D+ + + P+L+IL+LSGN++ E D L LEEL L GN L F + +++
Sbjct: 181 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 239
Query: 167 LKRLSLESCSFLG-KLPPSVG 186
++ + G +LPP +
Sbjct: 240 IRERFPKLLRLDGHELPPPIA 260
>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
pdb|3VX8|C Chain C, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
Length = 292
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 115 NLPSLEILDLSGNKISGELPDFFG-----NLPSLEELDLSGNQLSGD 156
NLPS++ LD++ +P +FG ++P +EE D + N + D
Sbjct: 103 NLPSMDALDINEKNTIQSIPTYFGGEEDDDIPDMEEFDEADNVVEND 149
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 113 IGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
I LP++ L L+GNK++ P NL +L L L N++ S+ L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118
Query: 173 ESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSS 232
S + L +L QL+ L L +N + + + L L+TL + S +P
Sbjct: 119 NGISDINGLV----HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-- 170
Query: 233 LRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSS 272
L LT+L L LS+NH S L LKNL+VL L S
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFS 206
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 71 LEKLDLSLN-VFSGDMPAVIGNLSSLKALVLSKTNFSSDL-PAFIGNLPSLEILDLSGNK 128
LEK+++S N V V NL L + + K N + P NLP+L+ L +S
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 129 ISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSF------LGKLP 182
I LPD + SL+++ L + + ++ T S LS ES + ++
Sbjct: 116 IK-HLPDVHK-IHSLQKVLLD---IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170
Query: 183 PSVGNLTQLQWLGLASNNFSGNLPSTI 209
S N TQL L L+ NN LP+ +
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDV 197
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 93 SSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQ 152
S +K LSK+ + L + + LE L L+ N+I+ + F L L+EL L NQ
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQ 334
Query: 153 LSGDFSVSTG---NLTSLKRLSLES 174
L SV G LTSL+++ L +
Sbjct: 335 LK---SVPDGIFDRLTSLQKIWLHT 356
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 13 IPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLE 72
+ S + + L L L+ N+++ + L LKEL L TN+L L+SL+
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQ 350
Query: 73 KLDLSLNVFSGDMPAV 88
K+ L N + P +
Sbjct: 351 KIWLHTNPWDCSCPRI 366
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 187 NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246
+L QL+ L L +N + + + L L+TL + +P L LT+L L LS+
Sbjct: 130 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSK 185
Query: 247 NHFSGGMELDVFLISLKNLEVLYLSSNR 274
NH S L LKNL+VL L S
Sbjct: 186 NHISDLRALR----GLKNLDVLELFSQE 209
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 14/179 (7%)
Query: 70 SLEKLDLSLN-VFSGDMPAVIGNLSSLKALVLSKTNFSSDL-PAFIGNLPSLEILDLSGN 127
LEK+++S N V V NL L + + K N + P NLP+L+ L +S
Sbjct: 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114
Query: 128 KISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSF------LGKL 181
I LPD + SL+++ L + + ++ T S LS ES + ++
Sbjct: 115 GIK-HLPDVHK-IHSLQKVLLD---IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169
Query: 182 PPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLET-LDISSCNFSGPIPSSLRNLTQL 239
N TQL L L+ NN LP+ + + S LDIS L NL +L
Sbjct: 170 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 109 LPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK 168
LP + L LE+L S N + D NLP L+EL L N+L S + L S
Sbjct: 478 LPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQ--SAAIQPLVSCP 533
Query: 169 RLSL 172
RL L
Sbjct: 534 RLVL 537
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 109 LPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK 168
LP + L LE+L S N + D NLP L+EL L N+L S + L S
Sbjct: 478 LPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQ--SAAIQPLVSCP 533
Query: 169 RLSL 172
RL L
Sbjct: 534 RLVL 537
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 123 DLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVST-GNLTSLKRLSLESCS 176
+LS N+ISG+L P+L+ L+LSGN++ ++ L +LK L L +C
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 129
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 118/301 (39%), Gaps = 26/301 (8%)
Query: 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSL 78
+ ++I DL ++L+ A +L +LK LD + + L S + + ++ L +
Sbjct: 118 HFRRMIVSDLDLDRLA---KARADDLETLK-LDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173
Query: 79 NVFSGDMPAVIGNLS----SLKALVLSKTNFSS----DLPAFIGNLPSLEILDLSGNKIS 130
+ FS + L+ SL+ L T F+ DL N SL + + +I
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233
Query: 131 GELPDFFGNLPSLEELDLSGNQLSGDFSVSTG--NLTSLKRLSLESCSFLG--KLP---P 183
EL FF +LEE G L+ D + NL ++L S++G ++P P
Sbjct: 234 -ELVGFFKAAANLEEF--CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290
Query: 184 SVGNLTQLQWL-GLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCL 242
+ +L L L L NL LET ++ + + QL L
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG---DRGLEVLAQYCKQLKRL 347
Query: 243 DLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTE 302
+ R GME + L+S + L L L S T++ ++G NL +
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407
Query: 303 F 303
F
Sbjct: 408 F 408
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 26/136 (19%)
Query: 94 SLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG--ELPD--FFGNL--------- 140
SL+AL + + N+ +DLP SL LD+S N SG ELP ++ N
Sbjct: 258 SLEALNV-RDNYLTDLPELPQ---SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313
Query: 141 ---PSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLA 197
PSLEEL++S N+L ++ L+RL + S + L ++P NL QL
Sbjct: 314 DLPPSLEELNVSNNKLIELPALP----PRLERL-IASFNHLAEVPELPQNLKQLHVEYNP 368
Query: 198 SNNFSGNLPSTIGNLR 213
F ++P ++ +LR
Sbjct: 369 LREF-PDIPESVEDLR 383
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-G 66
K +P+ + ++++YL NQ++ P L L LDL N+L+ LP+ +
Sbjct: 19 KSLASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD 75
Query: 67 NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100
L+ L +L L+ N NL SL + L
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 118 SLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
+ ++L L N+I+ P F L L LDL NQL+ + LT L +LSL
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 7 KKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIG 66
++ +P+ + +++++L + NQ++ P +L L L+L+ N+L+
Sbjct: 28 ERSLASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFD 85
Query: 67 NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100
L+ L L L +N V NL SL + L
Sbjct: 86 KLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 1 MFAFFLKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGR 60
+ ++ + T P +L++L YL+L+ NQL+ L L L L N+L
Sbjct: 44 VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSI 103
Query: 61 LPSSIGNLSSLEKLDL 76
NL SL + L
Sbjct: 104 PMGVFDNLKSLTHIYL 119
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-G 66
K +P+ + ++++YL NQ++ P L L LDL N+L+ LP+ +
Sbjct: 27 KSLASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD 83
Query: 67 NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100
L+ L +L L+ N NL SL + L
Sbjct: 84 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 118 SLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
+ ++L L N+I+ P F L L LDL NQL+ + LT L +LSL
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 118 SLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSL 172
+ ++L L N+I+ P F L L LDL NQL+ + LT L +LSL
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 8 KKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSI-G 66
K +P+ + ++++YL N+++ P L L LDL N+L+ LP+ +
Sbjct: 19 KSLASVPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD 75
Query: 67 NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100
L+ L +L L+ N NL SL + L
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 15/69 (21%)
Query: 73 KLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSL--EILDLSGNKIS 130
+LD S +++ GD+ AV+ L +L TN+ PA G+ P + E++DL G IS
Sbjct: 195 RLDASKHMWPGDIKAVLDKLHNL------NTNW---FPA--GSRPFIFQEVIDLGGEAIS 243
Query: 131 GELPDFFGN 139
++FGN
Sbjct: 244 SS--EYFGN 250
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 9 KTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPS----- 63
KT + +SL KL L+ NQL G++PA G+ L L+L+ N+++ +P+
Sbjct: 318 KTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGF 375
Query: 64 --SIGNLS-SLEKLDLSLNVFSGDMPAVIG--NLSSLKALVLSKTNFSS-DLPAFIG-NL 116
+ NLS + KL N+F +V + S + + NF D F G N+
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 117 PSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLS 154
S ++LS N+IS + F L ++L GN L+
Sbjct: 436 SS---INLSNNQISKFPKELFSTGSPLSSINLXGNXLT 470
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN 79
SKL L L NQ+ S+ L +L+EL L N+LS R+P+ + +L L+ + L N
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQIS 491
L+ L + K G IP+ E L + L N +Q L+ S L L LG+NQI
Sbjct: 174 LNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 492 DTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDI 535
L LP L L L +NK + R P G P L+++ +
Sbjct: 231 MIENGSLSFLPTLRELHLDNNK---LSRVPA---GLPDLKLLQV 268
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 29/157 (18%)
Query: 394 IGGIAPWICNLNFLEGLDLSRN-NLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLG 452
+ G+ IC N + LDLS+N NL+ L C N +L + L +
Sbjct: 63 LTGLTKLICTSNNITTLDLSQNTNLTYLA--CDSNKLTNLDVTPLTKLTYLN------CD 114
Query: 453 VEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSN 512
L +D+S N L L +L+ N +++ S L L+ + +
Sbjct: 115 TNKLTKLDVSQNPL-------------LTYLNCARNTLTEIDVSHNTQLTELDCHL--NK 159
Query: 513 KFHGIIREPGT-----DCGFPKLRIIDISSNRFIGKL 544
K + P T DC F K+ +D+S N+ + +L
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,074,400
Number of Sequences: 62578
Number of extensions: 699799
Number of successful extensions: 2971
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1464
Number of HSP's gapped (non-prelim): 746
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)