Query 040154
Match_columns 600
No_of_seqs 323 out of 3728
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-54 2.5E-59 492.8 37.0 515 21-547 69-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.3E-54 1.1E-58 487.3 37.5 524 6-542 78-608 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.9E-41 1.3E-45 323.4 9.4 410 23-557 54-468 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-37 3.8E-42 299.5 8.6 369 22-490 79-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2E-38 4.3E-43 293.1 -12.7 481 21-547 45-545 (565)
6 KOG0618 Serine/threonine phosp 100.0 5.5E-36 1.2E-40 304.3 -4.1 501 26-560 3-507 (1081)
7 KOG0472 Leucine-rich repeat pr 100.0 2.5E-37 5.5E-42 285.8 -17.4 439 16-515 63-541 (565)
8 KOG0618 Serine/threonine phosp 100.0 3.6E-34 7.9E-39 291.1 -8.6 462 22-538 46-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-31 2.3E-36 261.6 -3.1 375 18-521 4-381 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.7E-30 6E-35 251.8 -2.5 354 8-466 18-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 4.3E-26 9.3E-31 211.4 0.7 252 22-275 68-358 (498)
12 KOG4237 Extracellular matrix p 99.9 1.7E-25 3.6E-30 207.5 -3.5 268 25-299 50-357 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.8E-26 222.7 25.9 346 111-513 552-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 3.9E-21 8.4E-26 218.9 27.6 256 37-323 550-814 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 1.8E-19 3.8E-24 190.5 15.9 77 432-517 384-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 5.1E-19 1.1E-23 187.0 15.6 121 363-498 345-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-19 7.4E-24 176.8 2.4 177 26-202 3-206 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 5.5E-19 1.2E-23 175.3 2.8 264 11-274 13-318 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 1.5E-16 3.3E-21 169.6 11.3 249 263-541 178-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 1.9E-16 4.2E-21 168.8 11.5 248 237-515 178-428 (754)
21 KOG0617 Ras suppressor protein 99.6 5.8E-17 1.2E-21 133.8 -5.7 146 398-547 72-218 (264)
22 KOG0617 Ras suppressor protein 99.5 4.8E-17 1E-21 134.2 -6.3 162 44-211 32-194 (264)
23 KOG1909 Ran GTPase-activating 99.3 3.1E-13 6.6E-18 124.9 0.6 249 16-275 25-310 (382)
24 KOG1909 Ran GTPase-activating 99.3 5.5E-13 1.2E-17 123.3 -0.3 249 64-323 25-310 (382)
25 KOG3207 Beta-tubulin folding c 99.3 2.5E-12 5.4E-17 122.3 3.3 212 211-469 119-341 (505)
26 PF14580 LRR_9: Leucine-rich r 99.2 1.2E-11 2.5E-16 107.7 3.9 123 432-559 21-146 (175)
27 PF14580 LRR_9: Leucine-rich r 99.2 9.4E-12 2E-16 108.3 2.6 127 17-148 15-147 (175)
28 KOG3207 Beta-tubulin folding c 99.2 3.5E-12 7.7E-17 121.3 -0.0 136 140-276 196-339 (505)
29 KOG0532 Leucine-rich repeat (L 99.2 1.4E-12 3.1E-17 127.8 -2.9 168 363-541 78-247 (722)
30 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.8E-16 111.7 1.4 134 404-545 283-416 (490)
31 PLN03150 hypothetical protein; 99.1 1.1E-10 2.4E-15 124.6 7.4 113 432-545 420-532 (623)
32 PF13855 LRR_8: Leucine rich r 99.0 2.3E-10 4.9E-15 81.8 4.0 59 455-513 2-60 (61)
33 COG4886 Leucine-rich repeat (L 99.0 5E-10 1.1E-14 114.4 7.9 133 401-542 159-291 (394)
34 COG4886 Leucine-rich repeat (L 99.0 5.4E-10 1.2E-14 114.1 7.8 194 49-251 97-291 (394)
35 PLN03150 hypothetical protein; 99.0 7.4E-10 1.6E-14 118.3 7.8 108 407-515 420-528 (623)
36 KOG1259 Nischarin, modulator o 99.0 4.3E-11 9.4E-16 108.3 -1.6 138 423-569 278-415 (490)
37 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3E-14 77.7 4.8 61 478-540 1-61 (61)
38 KOG0531 Protein phosphatase 1, 98.9 1.2E-10 2.5E-15 119.1 -2.3 195 44-250 71-268 (414)
39 KOG0532 Leucine-rich repeat (L 98.9 5.5E-11 1.2E-15 116.9 -5.4 196 18-223 72-270 (722)
40 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-09 3.1E-14 118.6 3.1 201 21-227 523-731 (889)
41 KOG0531 Protein phosphatase 1, 98.8 5.4E-10 1.2E-14 114.2 -2.1 150 68-226 71-221 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.8 3.6E-09 7.7E-14 115.6 3.8 107 21-128 545-653 (889)
43 KOG1859 Leucine-rich repeat pr 98.7 9E-10 2E-14 111.4 -3.7 104 432-541 189-292 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.5E-14 99.3 -4.8 85 22-106 186-273 (419)
45 KOG2982 Uncharacterized conser 98.6 1.9E-08 4.1E-13 91.5 1.3 64 212-276 198-262 (418)
46 KOG2120 SCF ubiquitin ligase, 98.5 1E-09 2.2E-14 99.6 -7.3 182 118-300 186-375 (419)
47 KOG1859 Leucine-rich repeat pr 98.5 3E-09 6.6E-14 107.7 -6.6 126 383-515 166-292 (1096)
48 KOG2982 Uncharacterized conser 98.5 5.5E-08 1.2E-12 88.5 1.9 186 141-326 71-264 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.5 2.2E-08 4.7E-13 89.9 -1.1 137 141-277 157-317 (388)
50 COG5238 RNA1 Ran GTPase-activa 98.4 6.9E-08 1.5E-12 86.7 0.4 141 162-302 154-317 (388)
51 KOG4341 F-box protein containi 98.3 2.7E-08 5.9E-13 94.8 -4.1 277 46-322 139-437 (483)
52 KOG4579 Leucine-rich repeat (L 98.3 1.7E-08 3.8E-13 80.9 -4.7 142 405-553 27-170 (177)
53 KOG1644 U2-associated snRNP A' 98.2 3E-06 6.5E-11 73.2 5.8 124 23-150 21-149 (233)
54 KOG1644 U2-associated snRNP A' 98.1 7.4E-06 1.6E-10 70.8 5.8 105 432-541 21-126 (233)
55 PF13306 LRR_5: Leucine rich r 98.1 8.7E-06 1.9E-10 68.5 6.2 83 16-101 7-89 (129)
56 KOG4341 F-box protein containi 98.0 1.6E-07 3.5E-12 89.7 -5.0 289 214-548 139-446 (483)
57 PRK15386 type III secretion pr 98.0 2.9E-05 6.2E-10 76.5 10.1 34 428-464 154-187 (426)
58 PF12799 LRR_4: Leucine Rich r 98.0 4E-06 8.6E-11 54.6 2.8 38 479-517 2-39 (44)
59 PF13306 LRR_5: Leucine rich r 98.0 1.3E-05 2.7E-10 67.5 6.4 122 39-166 6-127 (129)
60 PF12799 LRR_4: Leucine Rich r 98.0 4.7E-06 1E-10 54.2 2.7 38 455-493 2-39 (44)
61 KOG4579 Leucine-rich repeat (L 97.9 8.1E-07 1.8E-11 71.5 -2.5 88 18-107 50-137 (177)
62 KOG3665 ZYG-1-like serine/thre 97.9 6.5E-06 1.4E-10 88.1 2.2 133 45-179 122-264 (699)
63 PRK15386 type III secretion pr 97.6 0.00025 5.4E-09 70.0 8.2 132 381-538 52-187 (426)
64 KOG1947 Leucine rich repeat pr 97.6 1.3E-05 2.7E-10 84.6 -0.8 130 44-173 187-329 (482)
65 KOG2739 Leucine-rich acidic nu 97.4 4.9E-05 1.1E-09 68.8 1.5 104 42-148 40-150 (260)
66 KOG3665 ZYG-1-like serine/thre 97.4 0.00014 3.1E-09 78.0 4.5 151 21-173 122-283 (699)
67 KOG2739 Leucine-rich acidic nu 97.4 3.7E-05 8E-10 69.6 -0.2 112 422-536 36-151 (260)
68 KOG2123 Uncharacterized conser 97.2 1.6E-05 3.4E-10 72.2 -4.6 100 20-123 18-123 (388)
69 KOG1947 Leucine rich repeat pr 97.1 6.8E-05 1.5E-09 79.0 -1.5 111 91-201 186-307 (482)
70 KOG2123 Uncharacterized conser 96.3 0.0002 4.4E-09 65.2 -4.6 103 452-559 17-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.007 1.5E-07 32.5 0.8 12 480-491 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.9 0.014 3.1E-07 31.3 1.1 19 456-475 2-20 (22)
73 KOG4308 LRR-containing protein 94.7 0.00021 4.6E-09 73.3 -11.5 182 47-228 89-305 (478)
74 KOG4308 LRR-containing protein 94.5 0.00037 8.1E-09 71.5 -10.4 116 401-516 168-304 (478)
75 KOG3864 Uncharacterized conser 94.4 0.01 2.2E-07 52.0 -0.3 91 12-102 92-185 (221)
76 smart00369 LRR_TYP Leucine-ric 92.2 0.1 2.2E-06 29.3 1.6 21 478-498 2-22 (26)
77 smart00370 LRR Leucine-rich re 92.2 0.1 2.2E-06 29.3 1.6 21 478-498 2-22 (26)
78 PF13504 LRR_7: Leucine rich r 91.5 0.14 3E-06 25.4 1.4 12 503-514 2-13 (17)
79 KOG0473 Leucine-rich repeat pr 91.0 0.0029 6.4E-08 56.3 -8.3 87 16-105 37-123 (326)
80 smart00369 LRR_TYP Leucine-ric 89.5 0.39 8.4E-06 26.9 2.3 19 21-39 2-20 (26)
81 smart00370 LRR Leucine-rich re 89.5 0.39 8.4E-06 26.9 2.3 19 21-39 2-20 (26)
82 KOG3864 Uncharacterized conser 88.5 0.062 1.3E-06 47.2 -2.1 59 215-273 103-161 (221)
83 TIGR00864 PCC polycystin catio 87.1 0.3 6.5E-06 59.4 1.6 46 508-555 1-46 (2740)
84 PF13516 LRR_6: Leucine Rich r 87.1 0.16 3.4E-06 27.8 -0.3 19 21-39 2-20 (24)
85 smart00365 LRR_SD22 Leucine-ri 83.8 0.89 1.9E-05 25.5 1.7 14 478-491 2-15 (26)
86 KOG0473 Leucine-rich repeat pr 81.2 0.059 1.3E-06 48.3 -5.6 79 432-513 44-122 (326)
87 smart00368 LRR_RI Leucine rich 72.3 2.7 5.8E-05 24.0 1.4 15 21-35 2-16 (28)
88 smart00367 LRR_CC Leucine-rich 64.1 5.3 0.00011 22.2 1.5 15 21-35 2-17 (26)
89 KOG4242 Predicted myosin-I-bin 63.3 21 0.00045 36.3 6.3 229 312-541 215-481 (553)
90 KOG4242 Predicted myosin-I-bin 62.4 52 0.0011 33.6 8.9 60 432-491 415-481 (553)
91 KOG3763 mRNA export factor TAP 56.9 5.1 0.00011 41.3 1.1 64 452-517 216-285 (585)
92 smart00364 LRR_BAC Leucine-ric 54.0 8.8 0.00019 21.5 1.2 18 288-305 2-19 (26)
93 KOG3763 mRNA export factor TAP 52.3 11 0.00024 39.0 2.5 14 213-226 218-231 (585)
94 TIGR00864 PCC polycystin catio 33.3 32 0.00069 43.2 2.8 40 219-258 1-40 (2740)
95 PF07723 LRR_2: Leucine Rich R 21.2 64 0.0014 18.0 1.2 12 239-250 2-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-54 Score=492.77 Aligned_cols=515 Identities=36% Similarity=0.545 Sum_probs=441.8
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccC-CCCCCCEEEccccCCCCCcchhccCCCCCCEEE
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIG-NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV 99 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 99 (600)
.+++.|+++++.+++..+.+|..+++|++|++++|++.+.+|..+. .+++|++|++++|.+.+..|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 5789999999999888888899999999999999999877776654 899999999999988876664 4688999999
Q ss_pred ccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcc
Q 040154 100 LSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 100 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 179 (600)
+++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 99999988888889999999999999999888888889999999999999999988888889999999999999999988
Q ss_pred cCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHh
Q 040154 180 KLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFL 259 (600)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 259 (600)
..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. ..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~ 304 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE--LV 304 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh--hH
Confidence 8888899999999999999999888888899999999999999999888888888999999999999988765442 22
Q ss_pred hcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCCCC-ccchhhhCCCCCcEEECcCCCCCCCCChhHH-hccC
Q 040154 260 ISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCNLT-EFPNFLKNQKNVAVLDLSSNRIHGKIPKWLL-EQNF 336 (600)
Q Consensus 260 ~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~l~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L 336 (600)
..+++|+.|++++|.+. +..+... .+++|+.+++++|.+. .+|..+..+++|+.|++++|.+.+..|..+. ..++
T Consensus 305 ~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 305 IQLQNLEILHLFSNNFT--GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred cCCCCCcEEECCCCccC--CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 37889999999998543 3333333 6788999999999887 7888888999999999999999888887764 3668
Q ss_pred CceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCC---CCCCcEEEcccCcccccChhhhhccCCCCeeeCC
Q 040154 337 SSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIP---PPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLS 413 (600)
Q Consensus 337 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~ 413 (600)
+.+++++|.+....+. ....+..+ +.+++++|++++..+.. .++++.+++++|.+.+..+..+..+++|+.|+++
T Consensus 383 ~~L~l~~n~l~~~~p~-~~~~~~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 383 FKLILFSNSLEGEIPK-SLGACRSL-RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CEEECcCCEecccCCH-HHhCCCCC-CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 9999999998765543 22334444 88999999998876654 6788999999999999998888889999999999
Q ss_pred CCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCccccc
Q 040154 414 RNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDT 493 (600)
Q Consensus 414 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 493 (600)
+|.+.+..|..+. .+ +|++|++++|++++..|..+.++++|+.|+|++|.+.+.+|..+.++++|++|+|++|.+++.
T Consensus 461 ~n~~~~~~p~~~~-~~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 461 RNKFFGGLPDSFG-SK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred CceeeeecCcccc-cc-cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 9999988887654 34 499999999999989999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChh
Q 040154 494 FPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSK 547 (600)
Q Consensus 494 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~ 547 (600)
.|..|+.+++|+.|+|++|++++..|..+ ..++.|+.+++++|++.|.+|..
T Consensus 539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNL--GNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CChhHhCcccCCEEECCCCcccccCChhH--hcCcccCEEeccCCcceeeCCCc
Confidence 99999999999999999999998876655 67889999999999999988853
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-54 Score=487.33 Aligned_cols=524 Identities=36% Similarity=0.520 Sum_probs=466.3
Q ss_pred cCCceeecCcCCCCCCCCcEEECCCCCCCCchhhh-hcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCC
Q 040154 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPAS-IGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGD 84 (600)
Q Consensus 6 ~~~~~~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 84 (600)
..+++|.+|.+|..+++|++|+|++|.+++.+|.. +..+++|++|++++|.+.+.+|. +.+++|++|++++|.+.+.
T Consensus 78 ~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~ 155 (968)
T PLN00113 78 GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155 (968)
T ss_pred CCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc
Confidence 44567888889999999999999999998766655 45999999999999999887774 5689999999999999989
Q ss_pred cchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCC
Q 040154 85 MPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNL 164 (600)
Q Consensus 85 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 164 (600)
.|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 99999999999999999999998889999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEc
Q 040154 165 TSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDL 244 (600)
Q Consensus 165 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 244 (600)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 99999999999999889999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCCCC-ccchhhhCCCCCcEEECcCCC
Q 040154 245 SRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCNLT-EFPNFLKNQKNVAVLDLSSNR 322 (600)
Q Consensus 245 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~l~-~~~~~l~~~~~L~~L~l~~n~ 322 (600)
++|.+.+..+.. ...+++|+.|++++|.+. +..+... .+++|+.+++++|++. .+|..+..+++|+.|++++|.
T Consensus 316 ~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 316 FSNNFTGKIPVA--LTSLPRLQVLQLWSNKFS--GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred CCCccCCcCChh--HhcCCCCCEEECcCCCCc--CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 999988655422 347899999999999653 3333333 6789999999999998 788889999999999999999
Q ss_pred CCCCCChhHH-hccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCC---CCCCCcEEEcccCcccccCh
Q 040154 323 IHGKIPKWLL-EQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPI---PPPRTRNYLISNNSLIGGIA 398 (600)
Q Consensus 323 l~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~---~~~~l~~l~l~~n~~~~~~~ 398 (600)
+.+..|..+. .++|+.|++++|+++...+. .....+.+ ..+++++|.+++..+. ..++++.|++++|.+.+..|
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLV-YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCC-CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 9998888763 46799999999999875443 23444555 8999999999987765 37899999999999999888
Q ss_pred hhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCC
Q 040154 399 PWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCS 478 (600)
Q Consensus 399 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~ 478 (600)
..+ ..++|+.|++++|++++..|..+..++. |++|++++|++.+..|..+.++++|++|+|++|.+++.+|..|.+++
T Consensus 470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred ccc-ccccceEEECcCCccCCccChhhhhhhc-cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 766 4589999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcc
Q 040154 479 NLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIG 542 (600)
Q Consensus 479 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~ 542 (600)
+|++|+|++|++++.+|..+..+++|+.|++++|++.+..|.... +..+....+.+|+..|
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~---~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA---FLAINASAVAGNIDLC 608 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch---hcccChhhhcCCcccc
Confidence 999999999999999999999999999999999999998876543 3344556677887554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-41 Score=323.41 Aligned_cols=410 Identities=25% Similarity=0.244 Sum_probs=290.4
Q ss_pred CcEEECCCCCCCCchhhhhcCC--CCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 23 LIYLDLSSNQLSGEIPASIGNL--GSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 23 L~~L~Ls~~~l~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
-+.||.++..+.......+.+. +.-+.|++++|++..+.+..|.++++|+.+++.+|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3456777766664433444443 23345777777777666667777777777777777665 55554445556777777
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCccc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK 180 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 180 (600)
.+|.|+++-.+.++.++.|+.|||+.|.++...-..|..-.++++|++++|+|+......|.++.+|..|.|++|.++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 77777766666677777777777777777655445566666677777777777766666666666777777777777666
Q ss_pred CCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhh
Q 040154 181 LPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLI 260 (600)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 260 (600)
.+..|..++.|+.|++..|+|...-...|.++++|+.|.|..|.|.....++|..+.+++.|+++.|++...-
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn------- 285 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN------- 285 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-------
Confidence 6666666677777777777665443445666666666666666666555566666666666666666554210
Q ss_pred cCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCcee
Q 040154 261 SLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLN 340 (600)
Q Consensus 261 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 340 (600)
..|+.+++.|+.|+++.|.|..
T Consensus 286 -------------------------------------------~g~lfgLt~L~~L~lS~NaI~r--------------- 307 (873)
T KOG4194|consen 286 -------------------------------------------EGWLFGLTSLEQLDLSYNAIQR--------------- 307 (873)
T ss_pred -------------------------------------------cccccccchhhhhccchhhhhe---------------
Confidence 1234445555555555554431
Q ss_pred cccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCccccc
Q 040154 341 LSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGL 420 (600)
Q Consensus 341 ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 420 (600)
+. +...+.+++|++|+|++|+|+..
T Consensus 308 --------ih-----------------------------------------------~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 308 --------IH-----------------------------------------------IDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred --------ee-----------------------------------------------cchhhhcccceeEeccccccccC
Confidence 11 01123467788888888888877
Q ss_pred CChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccC---cchhcCCCCcEEeCCCCcccccCCcc
Q 040154 421 LPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIP---RSLVNCSNLEFLDLGNNQISDTFPSW 497 (600)
Q Consensus 421 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~~~~ 497 (600)
.++.|..+.. |++|+|++|++..+.-..|.++++|+.|||++|.++..+. ..|.++++|+.|++.+|++..+...+
T Consensus 333 ~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 333 DEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred ChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence 7888888875 9999999999988888889999999999999999886654 46888999999999999999898899
Q ss_pred cCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhcccccee
Q 040154 498 LGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQV 557 (600)
Q Consensus 498 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~ 557 (600)
|.++++|+.|+|.+|.|-.+.++.+ ..+ .|++|-+..-.|.|.|...||..|---..
T Consensus 412 fsgl~~LE~LdL~~NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~ 468 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNAIASIQPNAF--EPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRK 468 (873)
T ss_pred hccCcccceecCCCCcceeeccccc--ccc-hhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence 9999999999999999999976655 666 89999999999999999999999964333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-37 Score=299.51 Aligned_cols=369 Identities=29% Similarity=0.300 Sum_probs=293.7
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
.-++||+++|.+..+.+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+++-...++.++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4568999999999999999999999999999999998 888766667789999999999998888999999999999999
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccC
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
.|.++......|..-.++++|+|++|+++......|..+.+|..|.++.|+++...+..|.++++|+.|+|..|+|....
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99999877677777789999999999999888888999999999999999999999999999999999999999998765
Q ss_pred CccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhc
Q 040154 182 PPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLIS 261 (600)
Q Consensus 182 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 261 (600)
-..|.++++|+.|.+..|.+.......|..+.++++|+|..|++.....+++.+++.|+.|++++|.+.. +..+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d----- 311 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHID----- 311 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecc-----
Confidence 6789999999999999999998888899999999999999999998888899999999999999988753 1111
Q ss_pred CCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhH-HhccCCcee
Q 040154 262 LKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWL-LEQNFSSLN 340 (600)
Q Consensus 262 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~ 340 (600)
.++.+++|++|+++.|.++...+..+ ..+.|++|+
T Consensus 312 --------------------------------------------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 312 --------------------------------------------SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred --------------------------------------------hhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 12223333333333333332222222 112233333
Q ss_pred cccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCccccc
Q 040154 341 LSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGL 420 (600)
Q Consensus 341 ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 420 (600)
|++|.++.+ -...|..+++|++|||+.|.++..
T Consensus 348 Ls~Nsi~~l-----------------------------------------------~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 348 LSHNSIDHL-----------------------------------------------AEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred ccccchHHH-----------------------------------------------HhhHHHHhhhhhhhcCcCCeEEEE
Confidence 333333222 222466788888889988888765
Q ss_pred CC---hhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcc
Q 040154 421 LP---HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQI 490 (600)
Q Consensus 421 ~~---~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 490 (600)
+. ..|..++. |+.|++.+|++..+...+|+++..|+.|||.+|.|-.+.+++|..+ .|++|.+..-.+
T Consensus 381 IEDaa~~f~gl~~-LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 381 IEDAAVAFNGLPS-LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred Eecchhhhccchh-hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 43 34555664 8888888888877777788888888888888888887888888887 788887754433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=293.07 Aligned_cols=481 Identities=29% Similarity=0.367 Sum_probs=325.4
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
..++.+++++|.+. .....+.++..|.+|++++|++. ..|.+++.+..++.++.++|++. .+|..++.+++|++++.
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 46777888888877 44556778888888888888887 67778888888888888888886 67778888888888888
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCccc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK 180 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 180 (600)
++|.+.. .++.++.+..++.++..+|++. ..|..+.++.++..+++.+|.+....+.... ++.|++++...|.+. .
T Consensus 122 s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence 8888775 4455777888888888888887 5666777888888888888888766555554 788888888877765 4
Q ss_pred CCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhh
Q 040154 181 LPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLI 260 (600)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 260 (600)
+|..++.+.+|+-|++..|++. ..| .|.+|..|++++++.|.|.........+++++..||+++|++.. ++.+..
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~c-- 272 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEIC-- 272 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHH--
Confidence 5677888888888888888887 445 67888888888888888875555556688888888888888764 232221
Q ss_pred cCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCC------CCcE----EECcCCC--------
Q 040154 261 SLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQK------NVAV----LDLSSNR-------- 322 (600)
Q Consensus 261 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~------~L~~----L~l~~n~-------- 322 (600)
.+++|+.|++++|.++. -......+ .|+.+.+.+|.+..+-..+-.+. .|+. =-++...
T Consensus 273 lLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HhhhhhhhcccCCcccc--CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 45677777777774332 11211223 55556666665543322111111 0110 0000000
Q ss_pred -CCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhh
Q 040154 323 -IHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWI 401 (600)
Q Consensus 323 -l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 401 (600)
.....|+....-+.+.|+++.-+++.++...+-+.-... ++..++++|++. .+|..+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~---------------------Vt~VnfskNqL~-elPk~L 407 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI---------------------VTSVNFSKNQLC-ELPKRL 407 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc---------------------eEEEecccchHh-hhhhhh
Confidence 001111122223355555665555555543222222222 334444555543 234444
Q ss_pred hccCCCC-eeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCC
Q 040154 402 CNLNFLE-GLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNL 480 (600)
Q Consensus 402 ~~~~~L~-~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 480 (600)
..++.+. .+++++|.++ .+|..++.+++ |..|++++|-+. ..|..+..+..|+.||++.|++. ..|..+.....|
T Consensus 408 ~~lkelvT~l~lsnn~is-fv~~~l~~l~k-Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l 483 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKIS-FVPLELSQLQK-LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL 483 (565)
T ss_pred HHHHHHHHHHHhhcCccc-cchHHHHhhhc-ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence 4444443 4566666665 77888888886 999999988887 56777888888999999999887 677777766777
Q ss_pred cEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChh
Q 040154 481 EFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSK 547 (600)
Q Consensus 481 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~ 547 (600)
+.+-.++|++....+..+.++.+|..|||++|.+..+.| ..+++.+|++|+++||||. .|..
T Consensus 484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp---~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP---ILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh---hhccccceeEEEecCCccC--CCHH
Confidence 777777788887777778889999999999999887743 2368899999999999997 5644
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-36 Score=304.30 Aligned_cols=501 Identities=26% Similarity=0.302 Sum_probs=350.2
Q ss_pred EECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccC
Q 040154 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNF 105 (600)
Q Consensus 26 L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 105 (600)
+|.+.+.+. .+|..+-....++.|+++.|.+-...-+.+.+.-+|+.|++++|.+. ..|..+..+++|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455555555 34444444444666666666554322233344445777777766664 5555566666777777776666
Q ss_pred CCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccc
Q 040154 106 SSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSV 185 (600)
Q Consensus 106 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 185 (600)
.. .|....++.+|+.+.|.+|.+. ..|..+..+++|+.|++++|.+. ..|..+..+..++.+..++|.-.. .+
T Consensus 81 ~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~l 153 (1081)
T KOG0618|consen 81 RS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RL 153 (1081)
T ss_pred hh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hh
Confidence 54 3355666677777777777665 56666777777777777777665 345555566666666667662111 12
Q ss_pred cCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCC
Q 040154 186 GNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNL 265 (600)
Q Consensus 186 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L 265 (600)
+... .+.+++..|.+.+.++..+..+.. .|+|++|.+.. ..+..+++|+.+....|.+.... ..-+++
T Consensus 154 g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~------~~g~~l 221 (1081)
T KOG0618|consen 154 GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE------ISGPSL 221 (1081)
T ss_pred cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEE------ecCcch
Confidence 2222 677777777777666666655555 68888887762 34567788888888888776311 255788
Q ss_pred CEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceeccccc
Q 040154 266 EVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNL 345 (600)
Q Consensus 266 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~ 345 (600)
+.|+.++|++. .......+.+++.++++.+++..+|+|+..|.+|+.++..+|.++......+...+++.+.+..|.
T Consensus 222 ~~L~a~~n~l~---~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 222 TALYADHNPLT---TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred heeeeccCcce---eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 89999999765 222233567899999999999999999999999999999999997666666677789999999999
Q ss_pred ccCCCCCCCccCCCCCCcEEEcccCcccccCCCC----CCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccC
Q 040154 346 LTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIP----PPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLL 421 (600)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~----~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 421 (600)
+..+++.. .+...+ +.+++..|++...++.. ..+++.+..+.|.+.......=...+.|+.|.+.+|++++..
T Consensus 299 l~yip~~l--e~~~sL-~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 299 LEYIPPFL--EGLKSL-RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhCCCcc--ccccee-eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 99888753 233444 88999999887665533 334556666666654433222223567889999999999876
Q ss_pred ChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCC
Q 040154 422 PHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGAL 501 (600)
Q Consensus 422 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l 501 (600)
-..+.++.. |+.|+|++|++.......+.++..|+.|+||||+++ .+|..+.+|..|++|...+|.+. ..| .+..+
T Consensus 376 ~p~l~~~~h-LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 376 FPVLVNFKH-LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred hhhhccccc-eeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence 667777774 999999999998666667888999999999999998 67788999999999999999997 556 67789
Q ss_pred CCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccceeecc
Q 040154 502 PNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNT 560 (600)
Q Consensus 502 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~~ 560 (600)
+.|+++|++.|.++....... ...++|++||++||.- ...+.+.|..++.+...++
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLdlSGN~~-l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLDLSGNTR-LVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred CcceEEecccchhhhhhhhhh--CCCcccceeeccCCcc-cccchhhhHHhhhhhheec
Confidence 999999999999987743333 2237899999999985 3566677777766654443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-37 Score=285.76 Aligned_cols=439 Identities=32% Similarity=0.380 Sum_probs=255.9
Q ss_pred CCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCC------------
Q 040154 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSG------------ 83 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~------------ 83 (600)
.+.++..+++|++++|.+. ..|.+++++..++.|+.++|++. .+|..++.+.+|..++.++|.+..
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 3445555555555555555 34444555555555555555554 444455555555555555554431
Q ss_pred ----------CcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCC
Q 040154 84 ----------DMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQL 153 (600)
Q Consensus 84 ----------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i 153 (600)
..|..+.++.+|..+++.+|++....++.+. |+.|++||...|-++ .+|..++.+.+|+.|++.+|.+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc
Confidence 3344445555555555555555544444333 566666666666555 4555566666677777777666
Q ss_pred CCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhc
Q 040154 154 SGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSL 233 (600)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 233 (600)
... | .|.+|..|+++.++.|++..........++.+..||+.+|+++ ..|+.+..+.+|+.||+++|.|+ ..|..+
T Consensus 219 ~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 219 RFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred ccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 532 2 5666667777777777665443334446677777777777776 45666666777777777777776 345556
Q ss_pred cCCCCCCEEEcCCCcccccc------chhHHhhcCCC-CCEEEccCCccceeeccC-CC------CCCCcccEEEecCCC
Q 040154 234 RNLTQLSCLDLSRNHFSGGM------ELDVFLISLKN-LEVLYLSSNRLSVHTKAT-SS------TTSQKFGTVGLRSCN 299 (600)
Q Consensus 234 ~~l~~L~~L~l~~n~~~~~~------~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~-~~------~~~~~L~~l~l~~~~ 299 (600)
+++ .|+.|-+.+|++.... +.......+.. .+.-.++.-.-....... .. ....+.+.+++++-+
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 666 6777777777654210 00000000000 000001100000000000 01 134568889999999
Q ss_pred CCccchhhhCC---CCCcEEECcCCCCCCCCChhHHh-ccCCceecccccccCCCCCCCccCCCCCCcEEEcccCccccc
Q 040154 300 LTEFPNFLKNQ---KNVAVLDLSSNRIHGKIPKWLLE-QNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGP 375 (600)
Q Consensus 300 l~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~ 375 (600)
++.+|.....- .-...++++.|++.....+.... .-++.+++++|.+..+
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv-------------------------- 427 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV-------------------------- 427 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc--------------------------
Confidence 99999643332 23778999999987443333322 2255667777666443
Q ss_pred CCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCC
Q 040154 376 LPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEW 455 (600)
Q Consensus 376 ~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 455 (600)
|..++.+++|..|++++|.+. .+|..+..+.. |++|+++.|++. ..|.+...+..
T Consensus 428 ----------------------~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~-Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 428 ----------------------PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR-LQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred ----------------------hHHHHhhhcceeeecccchhh-hcchhhhhhhh-hheecccccccc-cchHHHhhHHH
Confidence 334566677777777777766 55666666664 777777777775 55666666666
Q ss_pred ccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccce
Q 040154 456 LRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFH 515 (600)
Q Consensus 456 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 515 (600)
++.+-.++|++....+..+.++.+|..|||.+|.+. .+|..++++.+|++|.+.+|++.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 666767777777666666777777777777777775 44556777777777777777776
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.6e-34 Score=291.14 Aligned_cols=462 Identities=30% Similarity=0.358 Sum_probs=280.9
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
+|+.||+++|.+. ..|..+..+++|+.|+++.|.|. ..|.+.+++.+|+++.|.+|.+. ..|..+..+.+|+.|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 3455555554444 33444444455555555555444 34444444555555555444443 444444445555555555
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccC
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
.|++.. +|..+..+..++.+..++|..... ++... ++.+++..|.+.+.+......+.+ .|++.+|.+. .
T Consensus 123 ~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~- 192 (1081)
T KOG0618|consen 123 FNHFGP-IPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V- 192 (1081)
T ss_pred hhccCC-CchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h-
Confidence 544442 333344444444444444411111 11111 455555555555444444444444 4666666655 1
Q ss_pred CccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhc
Q 040154 182 PPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLIS 261 (600)
Q Consensus 182 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 261 (600)
..+..++.|+.+....|++... --.-++++.|+.+.|.++...+. ....+|+.+++++|.+.. ++ .+. ..
T Consensus 193 -~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp-~wi-~~ 262 (1081)
T KOG0618|consen 193 -LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LP-EWI-GA 262 (1081)
T ss_pred -hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-ch-HHH-Hh
Confidence 2355566666666666665422 11235666777777766632221 123467777777777664 22 333 36
Q ss_pred CCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHH--hccCCce
Q 040154 262 LKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLL--EQNFSSL 339 (600)
Q Consensus 262 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L 339 (600)
+.+|+.+++.+|.+. ..........+|+.+....|.+..+|...+..++|+.|++..|.+....+.++. ...+..+
T Consensus 263 ~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 263 CANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred cccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence 777777777777542 111112244566777777777777777666677777777777777643332221 1224445
Q ss_pred ecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccc
Q 040154 340 NLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSG 419 (600)
Q Consensus 340 ~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~ 419 (600)
+.+.|++...+.. -....+.++.|++.+|.++...-+.+.+.+.|+.|+|++|++..
T Consensus 341 n~s~n~l~~lp~~-----------------------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSY-----------------------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhhhccccccccc-----------------------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 5555554443311 01114678889999999999888889999999999999999996
Q ss_pred cCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccC-Cccc
Q 040154 420 LLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTF-PSWL 498 (600)
Q Consensus 420 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~ 498 (600)
....++.++.. |++|++++|+++ .+|++...+..|++|...+|++. ..| .+..+++|+++|+|.|+++... |...
T Consensus 398 fpas~~~kle~-LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 398 FPASKLRKLEE-LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred CCHHHHhchHH-hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 66667778886 999999999998 56789999999999999999998 667 7899999999999999997643 3333
Q ss_pred CCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCC
Q 040154 499 GALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSN 538 (600)
Q Consensus 499 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N 538 (600)
. -++|++||++||.=..+. .-.+..+.++...++.-|
T Consensus 474 p-~p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 474 P-SPNLKYLDLSGNTRLVFD--HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred C-CcccceeeccCCcccccc--hhhhHHhhhhhheecccC
Confidence 2 289999999999854442 333355667777777766
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-31 Score=261.56 Aligned_cols=375 Identities=27% Similarity=0.382 Sum_probs=226.4
Q ss_pred CCCCCCcEEECCCCCCC-CchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCC
Q 040154 18 GNLSKLIYLDLSSNQLS-GEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96 (600)
Q Consensus 18 ~~l~~L~~L~Ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 96 (600)
+-++-.+-+|+++|.++ +.+|.....|++++.|.|...++. .+|+.++.|.+|++|.+++|.+. .+-..+..+|.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 33556677777777777 566777777777777777777766 66666777777777777766654 2333455566666
Q ss_pred EEEccCccCCC-CcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCC
Q 040154 97 ALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESC 175 (600)
Q Consensus 97 ~L~L~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 175 (600)
.+.+.+|++.. .+|..+-.+..|+.||+++|++. .. |..+..-+++-.|+|++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev------------------------P~~LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV------------------------PTNLEYAKNSIVLNLSYN 136 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hc------------------------chhhhhhcCcEEEEcccC
Confidence 66666655532 23333334444555555554444 23 333334444555555555
Q ss_pred CCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccch
Q 040154 176 SFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMEL 255 (600)
Q Consensus 176 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 255 (600)
+|.++....+.++..|-.||+++|++. .+|..+..+.+|++|.|++|.+...-...+..+++|+.|++++.+-+
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT----- 210 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT----- 210 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----
Confidence 555444444555666666666666665 34445555566666666666554433233334444444444443321
Q ss_pred hHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhcc
Q 040154 256 DVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQN 335 (600)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 335 (600)
.....+....+.+|..++++.|.+..+|+++..+++|+.|++|+|.++.....
T Consensus 211 ---------------------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~------ 263 (1255)
T KOG0444|consen 211 ---------------------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT------ 263 (1255)
T ss_pred ---------------------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc------
Confidence 11111111145666777777777777788888888888888888776531111
Q ss_pred CCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCC
Q 040154 336 FSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRN 415 (600)
Q Consensus 336 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 415 (600)
...-..|++|++|.|
T Consensus 264 -----------------------------------------------------------------~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 264 -----------------------------------------------------------------EGEWENLETLNLSRN 278 (1255)
T ss_pred -----------------------------------------------------------------HHHHhhhhhhccccc
Confidence 112234666777777
Q ss_pred cccccCChhhhhccccCceEECCCCcccc-ccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccC
Q 040154 416 NLSGLLPHCLGNISNHLSILNLQHNKFFG-TIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTF 494 (600)
Q Consensus 416 ~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 494 (600)
+++ ..|.+++.+++ |+.|...+|+++- -+|..++.+..|+++..++|.+. ..|..+..|..|+.|.|++|++. .+
T Consensus 279 QLt-~LP~avcKL~k-L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 279 QLT-VLPDAVCKLTK-LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred hhc-cchHHHhhhHH-HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ec
Confidence 776 66777777775 7777777777642 35666777777777777777776 67777778888888888888775 45
Q ss_pred CcccCCCCCCCEEEccCccceeecCCC
Q 040154 495 PSWLGALPNLNILILQSNKFHGIIREP 521 (600)
Q Consensus 495 ~~~~~~l~~L~~L~L~~n~l~~~~~~~ 521 (600)
|+.+.-++.|+.||++.|+-.-..|.+
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCCc
Confidence 677777778888888877755554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.7e-30 Score=251.80 Aligned_cols=354 Identities=25% Similarity=0.360 Sum_probs=254.9
Q ss_pred Cce-eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCC-CCc
Q 040154 8 KKT-GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFS-GDM 85 (600)
Q Consensus 8 ~~~-~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~-~~~ 85 (600)
.|+ +..|.....++.++.|.|...++. .+|..++.+.+|++|.+++|++. .+-+.++.+|.|+.+++..|.+. .-+
T Consensus 18 DFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGi 95 (1255)
T KOG0444|consen 18 DFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGI 95 (1255)
T ss_pred cCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCC
Confidence 345 567889999999999999999998 78999999999999999999998 55567899999999999999874 346
Q ss_pred chhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCC
Q 040154 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLT 165 (600)
Q Consensus 86 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 165 (600)
|..+..+..|+.|||++|++.. .|..+..-+++-+|++++|++..+....|.++..|-.|++++|++.. .|.....+.
T Consensus 96 P~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~ 173 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLS 173 (1255)
T ss_pred Cchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHh
Confidence 6677889999999999999985 56778888999999999999986666677889999999999999874 455667788
Q ss_pred CCCEEEecCCCCcccCCccccCCCCCcEEeccccccc-cCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEc
Q 040154 166 SLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS-GNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDL 244 (600)
Q Consensus 166 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 244 (600)
+|++|.|++|++.-.--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|..+..+++|+.|++
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheecc
Confidence 8889999988865433334556677777788777543 235667777777777788777776 66677777777777777
Q ss_pred CCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCC
Q 040154 245 SRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIH 324 (600)
Q Consensus 245 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~ 324 (600)
++|+++...... ..+.+++.|+++.|+++.+|.++..++.|+.|.+.+|.++
T Consensus 253 S~N~iteL~~~~----------------------------~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 253 SGNKITELNMTE----------------------------GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred CcCceeeeeccH----------------------------HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence 777765311100 0123455555555566677777777777666666666543
Q ss_pred CCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhcc
Q 040154 325 GKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNL 404 (600)
Q Consensus 325 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~ 404 (600)
-. .+|..++.+
T Consensus 305 Fe---------------------------------------------------------------------GiPSGIGKL 315 (1255)
T KOG0444|consen 305 FE---------------------------------------------------------------------GIPSGIGKL 315 (1255)
T ss_pred cc---------------------------------------------------------------------CCccchhhh
Confidence 11 122234445
Q ss_pred CCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCcc
Q 040154 405 NFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL 466 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 466 (600)
..|+++..++|.+. ..|..++.+.+ |+.|.|++|++. ..|+.+.-++.|+.||+.+|.-
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~k-L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVK-LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHH-HHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 55555555555555 55666666664 666666666654 4555666666666666666653
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=4.3e-26 Score=211.36 Aligned_cols=252 Identities=25% Similarity=0.272 Sum_probs=170.1
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccc-cCCCCCcchhccCCCCCCEEEc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSL-NVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L 100 (600)
.-+.++|..|+|+.+++.+|+.+++|++|||++|.|+.+.|++|..+++|..|-+.+ |+|+....++|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567788888888888888888888888888888888888888888888877777766 7888777778888888888888
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCC------------cchhhcCCCCC--
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG------------DFSVSTGNLTS-- 166 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~------------~~~~~~~~~~~-- 166 (600)
.-|++.....++|..++++..|.+.+|.+..+...+|..+..++.+.+..|.... ..+..+++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 8888888778888888888888888888775444467777777777777665210 01111111111
Q ss_pred --------------------CCEE---EecCCCCcccCC-ccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecC
Q 040154 167 --------------------LKRL---SLESCSFLGKLP-PSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISS 222 (600)
Q Consensus 167 --------------------L~~L---~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 222 (600)
++.+ -.+.|....+.| ..|..+++|+.|++++|+++++-+.+|.+...++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 1111 111121222222 3456667777777777777766666777777777777777
Q ss_pred CcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCcc
Q 040154 223 CNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRL 275 (600)
Q Consensus 223 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 275 (600)
|++.......|.++..|+.|++.+|+++...+ . ++.....|.+|++-.|++
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~-aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-G-AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEec-c-cccccceeeeeehccCcc
Confidence 77766666667777777777777777664222 2 222555666666666654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-25 Score=207.46 Aligned_cols=268 Identities=25% Similarity=0.289 Sum_probs=191.6
Q ss_pred EEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccC-c
Q 040154 25 YLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK-T 103 (600)
Q Consensus 25 ~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n 103 (600)
.+|-++-+++ .+|..+. +.-.+++|..|+|+.+.+.+|..+++|+.||||+|.|+.+.|++|.++++|.+|-+.+ |
T Consensus 50 ~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4566666676 4444333 4678899999999988899999999999999999999999999999999999887777 8
Q ss_pred cCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcc----
Q 040154 104 NFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLG---- 179 (600)
Q Consensus 104 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~---- 179 (600)
+|+....+.|+++..++.|.+.-|++.....++|..++++..|.+.+|.+..+....|..+..++.+.+..|....
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 8998888999999999999999999998888899999999999999999887777788889999999888877221
Q ss_pred --------cCCccccCCCCCcEEecccccc-------------------------ccCCC-ccccCCCCCcEEEecCCcC
Q 040154 180 --------KLPPSVGNLTQLQWLGLASNNF-------------------------SGNLP-STIGNLRSLETLDISSCNF 225 (600)
Q Consensus 180 --------~~~~~l~~l~~L~~L~l~~n~l-------------------------~~~~~-~~l~~l~~L~~L~L~~n~l 225 (600)
..|-.++.........+.+.++ .+..| ..|..+++|++|+|++|.+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 1111222222222222222211 11111 3456677777777777777
Q ss_pred CCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCC
Q 040154 226 SGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCN 299 (600)
Q Consensus 226 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~ 299 (600)
+.+.+.+|.....+++|.+..|++.. + ...++..+.+|++|++.+|+|+.... ..+ ....|..|.+-.|.
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~-v-~~~~f~~ls~L~tL~L~~N~it~~~~--~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEF-V-SSGMFQGLSGLKTLSLYDNQITTVAP--GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHH-H-HHHhhhccccceeeeecCCeeEEEec--ccccccceeeeeehccCc
Confidence 77777777777777777777777653 2 22333467777777777775544332 222 34455555555443
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.3e-21 Score=222.72 Aligned_cols=346 Identities=23% Similarity=0.262 Sum_probs=200.2
Q ss_pred hhcCCCCCCCEEEccCCcc------ccccCcccCCCC-CCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCc
Q 040154 111 AFIGNLPSLEILDLSGNKI------SGELPDFFGNLP-SLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPP 183 (600)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 183 (600)
.+|.+|++|+.|.+..+.. ....|..+..++ .|+.|.+.++.+.. .|..+ ...+|+.|++.++.+.. .+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~~-L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLEK-LWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCccccc-ccc
Confidence 4455555555555544321 112334444443 46666666655542 23333 34566666666666543 334
Q ss_pred cccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCC
Q 040154 184 SVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLK 263 (600)
Q Consensus 184 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 263 (600)
.+..+++|+.|+++++......| .+..+++|+.|++++|......|..+..+++|+.|++++|.....++... .++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLK 704 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCC
Confidence 45566666666666654332333 35556667777776665444556666666777777776665433333211 456
Q ss_pred CCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceeccc
Q 040154 264 NLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSH 343 (600)
Q Consensus 264 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~ 343 (600)
+|+.|++++|.. ....+ ....+|+.|+++++.+..+|..+ .+++|+.|++.++.......
T Consensus 705 sL~~L~Lsgc~~--L~~~p--~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~--------------- 764 (1153)
T PLN03210 705 SLYRLNLSGCSR--LKSFP--DISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWE--------------- 764 (1153)
T ss_pred CCCEEeCCCCCC--ccccc--cccCCcCeeecCCCccccccccc-cccccccccccccchhhccc---------------
Confidence 666666666621 11111 01234555555555555555432 34555555554432110000
Q ss_pred ccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCCh
Q 040154 344 NLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPH 423 (600)
Q Consensus 344 n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~ 423 (600)
.+.. +.......+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|.
T Consensus 765 -~~~~-----------------------l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 765 -RVQP-----------------------LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred -cccc-----------------------cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 0000 0000011246777888888877777888888888999999988865556665
Q ss_pred hhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCC
Q 040154 424 CLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPN 503 (600)
Q Consensus 424 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 503 (600)
.. .++ +|++|++++|......|.. .++|+.|+|++|.++ .+|..+..+++|++|+|++|+--..+|..+..+++
T Consensus 821 ~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 821 GI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 54 455 4889999988654444432 467888899998887 56778888889999999886433345556777888
Q ss_pred CCEEEccCcc
Q 040154 504 LNILILQSNK 513 (600)
Q Consensus 504 L~~L~L~~n~ 513 (600)
|+.|++++|.
T Consensus 895 L~~L~l~~C~ 904 (1153)
T PLN03210 895 LETVDFSDCG 904 (1153)
T ss_pred CCeeecCCCc
Confidence 8888888886
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.9e-21 Score=218.89 Aligned_cols=256 Identities=22% Similarity=0.268 Sum_probs=122.6
Q ss_pred hhhhhcCCCCCCEEEccCCCC------CCCCccccCCCC-CCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCc
Q 040154 37 IPASIGNLGSLKELDLSTNEL------SGRLPSSIGNLS-SLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDL 109 (600)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~~~i------~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 109 (600)
.+.+|.+|++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..| ...+|++|++.++++.. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-L 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-c
Confidence 345566677777776655432 112344444443 3666666665554 334333 34556666666655542 3
Q ss_pred chhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCC
Q 040154 110 PAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLT 189 (600)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 189 (600)
+..+..+++|+.|+++++.....+|. +..+++|++|++++|......|..+..+++|+.|++++|...+.+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 33445555666666655543323332 4455555555555554433444455555555555555554333333322 445
Q ss_pred CCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEE
Q 040154 190 QLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLY 269 (600)
Q Consensus 190 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 269 (600)
+|+.|++++|......|.. .++|+.|++++|.+.. .|..+ .+++|+.|.+.++.... +....
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~------l~~~~------- 766 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEK------LWERV------- 766 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhh------ccccc-------
Confidence 5555555555332222221 2344555555554432 22211 23444444443322110 00000
Q ss_pred ccCCccceeeccC-CCCCCCcccEEEecCCCCC-ccchhhhCCCCCcEEECcCCCC
Q 040154 270 LSSNRLSVHTKAT-SSTTSQKFGTVGLRSCNLT-EFPNFLKNQKNVAVLDLSSNRI 323 (600)
Q Consensus 270 l~~n~~~~~~~~~-~~~~~~~L~~l~l~~~~l~-~~~~~l~~~~~L~~L~l~~n~l 323 (600)
..... ....+++|+.|++++|... .+|..+.++++|+.|++++|..
T Consensus 767 --------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 767 --------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred --------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 00000 0012456677777766433 6777777777777777777653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.8e-19 Score=190.51 Aligned_cols=77 Identities=25% Similarity=0.254 Sum_probs=34.5
Q ss_pred CceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
|+.|++++|++++ +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++
T Consensus 384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 5555555555542 2211 2344555555555542 2321 123444555555554 2344444455555555555
Q ss_pred ccceee
Q 040154 512 NKFHGI 517 (600)
Q Consensus 512 n~l~~~ 517 (600)
|++++.
T Consensus 455 N~Ls~~ 460 (788)
T PRK15387 455 NPLSER 460 (788)
T ss_pred CCCCch
Confidence 555433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=5.1e-19 Score=187.04 Aligned_cols=121 Identities=26% Similarity=0.277 Sum_probs=81.6
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF 442 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 442 (600)
+.+++++|++.+.+ ..+.+++.|++++|.+.+ +|.. ..+|+.|++++|.+++ +|.. +.+|+.|++++|++
T Consensus 345 q~LdLS~N~Ls~LP-~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l----~s~L~~LdLS~N~L 414 (788)
T PRK15387 345 QELSVSDNQLASLP-TLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL----PSELKELMVSGNRL 414 (788)
T ss_pred ceEecCCCccCCCC-CCCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc----ccCCCEEEccCCcC
Confidence 44444444444322 224556666666666654 3332 3568888888888884 4432 23588899999988
Q ss_pred ccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCccc
Q 040154 443 FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWL 498 (600)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~ 498 (600)
++ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus 415 ss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 415 TS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 75 4443 356788899999988 678888888999999999999987766555
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.4e-19 Score=176.84 Aligned_cols=177 Identities=27% Similarity=0.303 Sum_probs=82.9
Q ss_pred EECCCCCCC-CchhhhhcCCCCCCEEEccCCCCCC----CCccccCCCCCCCEEEccccCCCC------CcchhccCCCC
Q 040154 26 LDLSSNQLS-GEIPASIGNLGSLKELDLSTNELSG----RLPSSIGNLSSLEKLDLSLNVFSG------DMPAVIGNLSS 94 (600)
Q Consensus 26 L~Ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~ 94 (600)
|+|.++.++ ......+..+++|++|+++++.+++ .++..+...+.+++++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 2233444555556666666666532 133344455556666666554431 12234455556
Q ss_pred CCEEEccCccCCCCcchhcCCCCC---CCEEEccCCcccc----ccCcccCCC-CCCCEEEccCCCCCCc----chhhcC
Q 040154 95 LKALVLSKTNFSSDLPAFIGNLPS---LEILDLSGNKISG----ELPDFFGNL-PSLEELDLSGNQLSGD----FSVSTG 162 (600)
Q Consensus 95 L~~L~L~~n~~~~~~~~~~~~~~~---L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~n~i~~~----~~~~~~ 162 (600)
|++|++++|.+....+..+..+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ....+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 666666666555433333333332 6666666655542 111223334 5555555555555422 122233
Q ss_pred CCCCCCEEEecCCCCccc----CCccccCCCCCcEEeccccccc
Q 040154 163 NLTSLKRLSLESCSFLGK----LPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 163 ~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
.+++|++|++++|.+.+. ++..+..++.|++|++++|.++
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 444555555555554421 1112233345555555555443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=5.5e-19 Score=175.35 Aligned_cols=264 Identities=27% Similarity=0.320 Sum_probs=193.0
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCc----hhhhhcCCCCCCEEEccCCCCCC------CCccccCCCCCCCEEEccccC
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGE----IPASIGNLGSLKELDLSTNELSG------RLPSSIGNLSSLEKLDLSLNV 80 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~----~~~~~~~l~~L~~L~l~~~~i~~------~~~~~l~~l~~L~~L~l~~n~ 80 (600)
+..+..+..+++|++|+++++.+++. ++..+...+.+++|+++++.+.+ .++..+.++++|+.|++++|.
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred cchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 34445567778899999999998642 55667788899999999998762 234567889999999999999
Q ss_pred CCCCcchhccCCCC---CCEEEccCccCCC----CcchhcCCC-CCCCEEEccCCccccc----cCcccCCCCCCCEEEc
Q 040154 81 FSGDMPAVIGNLSS---LKALVLSKTNFSS----DLPAFIGNL-PSLEILDLSGNKISGE----LPDFFGNLPSLEELDL 148 (600)
Q Consensus 81 ~~~~~~~~~~~l~~---L~~L~L~~n~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l 148 (600)
+....+..+..+.+ |++|++++|++.. .+...+..+ ++|++|++++|.+++. .+..+..++.|++|++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 87666666655555 9999999999874 223455667 8999999999998832 3345677889999999
Q ss_pred cCCCCCCc----chhhcCCCCCCCEEEecCCCCcccC----CccccCCCCCcEEeccccccccCCCcccc-----CCCCC
Q 040154 149 SGNQLSGD----FSVSTGNLTSLKRLSLESCSFLGKL----PPSVGNLTQLQWLGLASNNFSGNLPSTIG-----NLRSL 215 (600)
Q Consensus 149 ~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L 215 (600)
++|.+.+. .+..+...++|++|++++|.+.+.. ...+..+++|++|++++|.+++.....+. ..+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 99998853 2334556789999999999987442 34456788999999999988753222222 23689
Q ss_pred cEEEecCCcCCCC----CchhccCCCCCCEEEcCCCccccc--cchhHHhhcC-CCCCEEEccCCc
Q 040154 216 ETLDISSCNFSGP----IPSSLRNLTQLSCLDLSRNHFSGG--MELDVFLISL-KNLEVLYLSSNR 274 (600)
Q Consensus 216 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~-~~L~~L~l~~n~ 274 (600)
++|++++|.+++. ....+..+++|+.+++++|.+... .......... +.++++++.+++
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9999999988632 234556668899999999988743 2222222233 577888887764
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.5e-16 Score=169.58 Aligned_cols=249 Identities=23% Similarity=0.275 Sum_probs=184.1
Q ss_pred CCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecc
Q 040154 263 KNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLS 342 (600)
Q Consensus 263 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls 342 (600)
.+...|+++++.+..... . -++.++.|++++|++..+|..+. ++|+.|++++|.++. +|..+. .+++.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~---~-Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~-~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA---C-IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-IPATLP-DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCc---c-cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-CChhhh-ccccEEECc
Confidence 456789998876543221 1 24679999999999999887554 589999999999884 455443 469999999
Q ss_pred cccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCC
Q 040154 343 HNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLP 422 (600)
Q Consensus 343 ~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~ 422 (600)
+|++..++... ...++.+++++|++...+...+.+|+.|++++|+++.. |..+ .++|+.|++++|.++. +|
T Consensus 250 ~N~L~~LP~~l-----~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRITELPERL-----PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccCcCChhH-----hCCCCEEECcCCccCccccccCCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-CC
Confidence 99998775431 12348999999999875544467899999999998853 3322 2478899999999984 45
Q ss_pred hhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCC
Q 040154 423 HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALP 502 (600)
Q Consensus 423 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 502 (600)
..+. .+|++|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+. ++|++|+|++|+++.+ |..+. .
T Consensus 321 ~~l~---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L-P~~l~--~ 388 (754)
T PRK15370 321 ETLP---PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-PENLP--A 388 (754)
T ss_pred cccc---ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC-CHhHH--H
Confidence 4332 359999999999985 45544 378999999999998 4665553 6899999999999855 43443 4
Q ss_pred CCCEEEccCccceeecCCCC--CCCCCCcceEEEccCCcCc
Q 040154 503 NLNILILQSNKFHGIIREPG--TDCGFPKLRIIDISSNRFI 541 (600)
Q Consensus 503 ~L~~L~L~~n~l~~~~~~~~--~~~~~~~L~~L~l~~N~~~ 541 (600)
+|+.|++++|++..+ |..+ .....+.+..+++.+|++.
T Consensus 389 sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCcc
Confidence 799999999999865 2221 1123478899999999987
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.9e-16 Score=168.78 Aligned_cols=248 Identities=23% Similarity=0.317 Sum_probs=188.7
Q ss_pred CCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEE
Q 040154 237 TQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVL 316 (600)
Q Consensus 237 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L 316 (600)
.+...|+++++.++. ++.. -.+.++.|++++|.+..... ..+.+|+.|++++|++..+|..+. ++|+.|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~----Ip~~L~~L~Ls~N~LtsLP~----~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPAC----IPEQITTLILDNNELKSLPE----NLQGNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcCc-CCcc----cccCCcEEEecCCCCCcCCh----hhccCCCEEECCCCccccCChhhh--ccccEE
Confidence 356789999988764 3321 13579999999997764322 123689999999999999887553 589999
Q ss_pred ECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCccccc
Q 040154 317 DLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGG 396 (600)
Q Consensus 317 ~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~ 396 (600)
++++|.+. .+|..+. .+|+.|++++|+++.++... ...++.+++++|++++.+...+.+++.|++++|.+...
T Consensus 247 ~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~~LP~~l-----~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 247 ELSINRIT-ELPERLP-SALQSLDLFHNKISCLPENL-----PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTAL 319 (754)
T ss_pred ECcCCccC-cCChhHh-CCCCEEECcCCccCcccccc-----CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccC
Confidence 99999988 4565543 56999999999999765421 12348999999999986655567899999999999853
Q ss_pred ChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhc
Q 040154 397 IAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVN 476 (600)
Q Consensus 397 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 476 (600)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|+|++|.++ .+|..+.
T Consensus 320 -P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 320 -PETL--PPGLKTLEAGENALTS-LPASLP---PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred -Cccc--cccceeccccCCcccc-CChhhc---CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH-
Confidence 4322 3689999999999985 565543 36999999999997 455554 368999999999999 4555554
Q ss_pred CCCCcEEeCCCCccccc---CCcccCCCCCCCEEEccCccce
Q 040154 477 CSNLEFLDLGNNQISDT---FPSWLGALPNLNILILQSNKFH 515 (600)
Q Consensus 477 ~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~ 515 (600)
..|+.|++++|+++.+ +|..+..++.+..|++.+|+++
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4799999999999843 2234445689999999999987
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=5.8e-17 Score=133.76 Aligned_cols=146 Identities=24% Similarity=0.395 Sum_probs=105.6
Q ss_pred hhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcccc-ccCccccCCCCccEEEccCCccccccCcchhc
Q 040154 398 APWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFG-TIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVN 476 (600)
Q Consensus 398 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 476 (600)
|..++.++.|+.|+++-|++. ..|..|+.+|. |+.|++..|.+.. ..|+.|..++.|+.|.|++|.+. .+|...++
T Consensus 72 p~~issl~klr~lnvgmnrl~-~lprgfgs~p~-levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~ 148 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA-LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK 148 (264)
T ss_pred Chhhhhchhhhheecchhhhh-cCccccCCCch-hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh
Confidence 344667777888888878777 67777777776 8888888877743 56777888888888888888887 66777788
Q ss_pred CCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChh
Q 040154 477 CSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSK 547 (600)
Q Consensus 477 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~ 547 (600)
+++|+.|.+.+|.+- ..|..++.+..|++|++++|+++-+.|+-....-..+=+.+.+.+||+...+...
T Consensus 149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 888888888888775 5667777888888888888888776554332222233356667778877655544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=4.8e-17 Score=134.23 Aligned_cols=162 Identities=34% Similarity=0.567 Sum_probs=106.3
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEE
Q 040154 44 LGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILD 123 (600)
Q Consensus 44 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 123 (600)
+.+++.|.+++|+++ .+|..++.+.+|++|++++|.+. .+|..++.+++|+.|+++-|++. ..|..|+.+|.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 445555666666665 44445666666666666666654 45555666666666666666554 3555666666666666
Q ss_pred ccCCccc-cccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccc
Q 040154 124 LSGNKIS-GELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 124 l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
+.+|++. ...|..|..+..|+.|.+++|.+. ..|...+++++|+.|.+.+|.+.+ .|..++.+..|++|++.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceee
Confidence 6666655 345666667777777777777765 455666777788888887777654 5778888899999999999987
Q ss_pred cCCCccccC
Q 040154 203 GNLPSTIGN 211 (600)
Q Consensus 203 ~~~~~~l~~ 211 (600)
..|..+++
T Consensus 187 -vlppel~~ 194 (264)
T KOG0617|consen 187 -VLPPELAN 194 (264)
T ss_pred -ecChhhhh
Confidence 44544443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=3.1e-13 Score=124.93 Aligned_cols=249 Identities=23% Similarity=0.315 Sum_probs=125.7
Q ss_pred CCCCCCCCcEEECCCCCCCCc----hhhhhcCCCCCCEEEccCCC---CCCCCcc-------ccCCCCCCCEEEccccCC
Q 040154 16 SLGNLSKLIYLDLSSNQLSGE----IPASIGNLGSLKELDLSTNE---LSGRLPS-------SIGNLSSLEKLDLSLNVF 81 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~----~~~~~~~l~~L~~L~l~~~~---i~~~~~~-------~l~~l~~L~~L~l~~n~~ 81 (600)
.+..+..+++++||+|.+... +...+.+.++|+..++++-- ....+|. ++..+++|++++||.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 355566777888888877632 33445566777777776632 2223333 234556666666666665
Q ss_pred CCCcchh----ccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcc
Q 040154 82 SGDMPAV----IGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDF 157 (600)
Q Consensus 82 ~~~~~~~----~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 157 (600)
....+.. ++.+..|++|.|.+|.+.......++. .|.+|. .......-+.|+++..++|++....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 4333322 344566666666666554311111100 000000 0001122344555555555443321
Q ss_pred ----hhhcCCCCCCCEEEecCCCCccc----CCccccCCCCCcEEeccccccccC----CCccccCCCCCcEEEecCCcC
Q 040154 158 ----SVSTGNLTSLKRLSLESCSFLGK----LPPSVGNLTQLQWLGLASNNFSGN----LPSTIGNLRSLETLDISSCNF 225 (600)
Q Consensus 158 ----~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 225 (600)
...|...+.|+.+.+..|.|... ....+..+++|+.||+.+|.++.. +...+..+++|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 22334445555555555554322 113345566666666666655432 223445556677777777766
Q ss_pred CCCCchhc-----cCCCCCCEEEcCCCccccccc--hhHHhhcCCCCCEEEccCCcc
Q 040154 226 SGPIPSSL-----RNLTQLSCLDLSRNHFSGGME--LDVFLISLKNLEVLYLSSNRL 275 (600)
Q Consensus 226 ~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~n~~ 275 (600)
......+| ...|.|++|.+.+|.++.+-. ........+.|+.|++++|.+
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 54333222 235777777777777763221 111222467777778887765
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=5.5e-13 Score=123.27 Aligned_cols=249 Identities=22% Similarity=0.299 Sum_probs=122.3
Q ss_pred ccCCCCCCCEEEccccCCCCC----cchhccCCCCCCEEEccCcc---CCCCcc-------hhcCCCCCCCEEEccCCcc
Q 040154 64 SIGNLSSLEKLDLSLNVFSGD----MPAVIGNLSSLKALVLSKTN---FSSDLP-------AFIGNLPSLEILDLSGNKI 129 (600)
Q Consensus 64 ~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~---~~~~~~-------~~~~~~~~L~~L~l~~~~~ 129 (600)
.+..+..+..+++++|.+... +...++..++|+..++++-- ....+| .++..+|+|+.|+||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345566778888888776532 33345566677777665421 111122 3344556666666666655
Q ss_pred ccccCc----ccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCC
Q 040154 130 SGELPD----FFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNL 205 (600)
Q Consensus 130 ~~~~~~----~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 205 (600)
....+. .+.++..|++|.+.+|.+.......++. .|..|. .....+.-+.|+++..++|++.+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 422222 2334555555555555543221111100 000000 0011223355666666666654332
Q ss_pred ----CccccCCCCCcEEEecCCcCCCC----CchhccCCCCCCEEEcCCCcccc--ccchhHHhhcCCCCCEEEccCCcc
Q 040154 206 ----PSTIGNLRSLETLDISSCNFSGP----IPSSLRNLTQLSCLDLSRNHFSG--GMELDVFLISLKNLEVLYLSSNRL 275 (600)
Q Consensus 206 ----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~L~~L~l~~n~~ 275 (600)
...|...+.|+.+.+..|.|... ....|.+|++|++|++.+|-++. ...+...+..++.|+++++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 12334455666666666655422 23456667777777777776652 223333344556667777777755
Q ss_pred ceeeccCCCC----CCCcccEEEecCCCCC-----ccchhhhCCCCCcEEECcCCCC
Q 040154 276 SVHTKATSST----TSQKFGTVGLRSCNLT-----EFPNFLKNQKNVAVLDLSSNRI 323 (600)
Q Consensus 276 ~~~~~~~~~~----~~~~L~~l~l~~~~l~-----~~~~~l~~~~~L~~L~l~~n~l 323 (600)
...+.....- ..|.|+.+.+.+|.++ .+...+...+.|+.|++++|++
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5444332111 2445555555555544 1122233445556666666655
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.5e-12 Score=122.27 Aligned_cols=212 Identities=26% Similarity=0.286 Sum_probs=139.2
Q ss_pred CCCCCcEEEecCCcCCCCCc-hhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCc
Q 040154 211 NLRSLETLDISSCNFSGPIP-SSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQK 289 (600)
Q Consensus 211 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 289 (600)
++.+|+.+.|+++.+..... .....|++++.|+++.|-+..+.+...+...+|+|+.|+++.|++............+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45677777887776653322 35667889999999998888777777777789999999999987654433333336788
Q ss_pred ccEEEecCCCCC--ccchhhhCCCCCcEEECcCCC-CCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEE
Q 040154 290 FGTVGLRSCNLT--EFPNFLKNQKNVAVLDLSSNR-IHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLD 366 (600)
Q Consensus 290 L~~l~l~~~~l~--~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~ 366 (600)
++.|.+++|.+. ++...+..+|+|+.|++..|. +.......-..+.|++|||++|++...+....
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~------------ 266 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK------------ 266 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc------------
Confidence 999999999998 555667889999999999995 22211222234458888888887766543211
Q ss_pred cccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCccccc-CChh-----hhhccccCceEECCCC
Q 040154 367 FSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGL-LPHC-----LGNISNHLSILNLQHN 440 (600)
Q Consensus 367 l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~-----~~~~~~~L~~L~L~~n 440 (600)
...++.|+.|+++.|.+... .|.+ ...+++ |++|+++.|
T Consensus 267 ----------------------------------~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k-L~~L~i~~N 311 (505)
T KOG3207|consen 267 ----------------------------------VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK-LEYLNISEN 311 (505)
T ss_pred ----------------------------------cccccchhhhhccccCcchhcCCCccchhhhccccc-ceeeecccC
Confidence 23355566666666666532 1222 233453 777777777
Q ss_pred ccccc-cCccccCCCCccEEEccCCccccc
Q 040154 441 KFFGT-IPQTFLGVEWLRMIDLSDNLLQGR 469 (600)
Q Consensus 441 ~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 469 (600)
+|.+- ..+.+..+++|+.|.+..|.+..+
T Consensus 312 ~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 312 NIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccccccchhhccchhhhhhccccccccc
Confidence 77421 123445566667777777766643
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.2e-11 Score=107.66 Aligned_cols=123 Identities=28% Similarity=0.339 Sum_probs=42.4
Q ss_pred CceEECCCCccccccCcccc-CCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEcc
Q 040154 432 LSILNLQHNKFFGTIPQTFL-GVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQ 510 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 510 (600)
+++|+|++|+|+.+ +.+. .+.+|+.|+|++|.|+.. ..+..++.|++|++++|+|+.+.+.....+|+|++|+++
T Consensus 21 ~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 21 LRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 66666666666543 2333 456677777777777643 246667777777777777775533222356777777777
Q ss_pred CccceeecCCCCCCCCCCcceEEEccCCcCcccCC--hhhHhccccceeec
Q 040154 511 SNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP--SKYFQCWNAMQVVN 559 (600)
Q Consensus 511 ~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~--~~~~~~~~~l~~~~ 559 (600)
+|+|..... -.....+++|+.|++.+||++..-. ...+..++.|+.++
T Consensus 97 ~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 97 NNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 777766521 1223457888888888888764322 12355567777765
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=9.4e-12 Score=108.26 Aligned_cols=127 Identities=35% Similarity=0.432 Sum_probs=43.3
Q ss_pred CCCCCCCcEEECCCCCCCCchhhhhc-CCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCC
Q 040154 17 LGNLSKLIYLDLSSNQLSGEIPASIG-NLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95 (600)
Q Consensus 17 ~~~l~~L~~L~Ls~~~l~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 95 (600)
+-+..++++|+|+++.|+.+ ..++ .+.+|+.|++++|.|+.. . .+..+++|++|++++|.++...+.....+|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 44455678888888888743 3344 467888888888888743 2 47777888888888888875433222457788
Q ss_pred CEEEccCccCCCC-cchhcCCCCCCCEEEccCCccccccCc----ccCCCCCCCEEEc
Q 040154 96 KALVLSKTNFSSD-LPAFIGNLPSLEILDLSGNKISGELPD----FFGNLPSLEELDL 148 (600)
Q Consensus 96 ~~L~L~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 148 (600)
++|++++|++.+. .-..++.+++|+.|++.+|.++.. +. .+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 8888888877652 224566777788888877777632 21 2345566666654
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.5e-12 Score=121.27 Aligned_cols=136 Identities=27% Similarity=0.288 Sum_probs=62.4
Q ss_pred CCCCCEEEccCCCCCCc-chhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCC-CccccCCCCCcE
Q 040154 140 LPSLEELDLSGNQLSGD-FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNL-PSTIGNLRSLET 217 (600)
Q Consensus 140 l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~ 217 (600)
++.|+.|.++.|.++-. +...+..+|+|+.|++..|...........-+..|++|+|++|++.+.. ....+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 34555555555554411 1122234555555555555322221122233445555566555554321 123444555555
Q ss_pred EEecCCcCCCC-Cchh-----ccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccc
Q 040154 218 LDISSCNFSGP-IPSS-----LRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276 (600)
Q Consensus 218 L~L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 276 (600)
|+++.+.+..+ .|.+ ...+++|+.|++..|++..+-...... ..++|+.+.+..|.+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccccccc
Confidence 55555555432 1111 234566666666666664333322222 4555566665555443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.4e-12 Score=127.79 Aligned_cols=168 Identities=26% Similarity=0.304 Sum_probs=139.5
Q ss_pred cEEEcccCcccccCCCC--CCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCC
Q 040154 363 FSLDFSSNFLQGPLPIP--PPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHN 440 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n 440 (600)
...|++.|++...+... +..++.+.+..|.+. .+|..++++..|+.+||+.|+++ ..|..++.++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNN 153 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecC
Confidence 44566666665544333 556777777777765 46778999999999999999999 7787888887 999999999
Q ss_pred ccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCC
Q 040154 441 KFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIRE 520 (600)
Q Consensus 441 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 520 (600)
+++ ..|..++.+..|..||.+.|.+. .+|..+.++.+|+.|.+..|++.+..++ +. .-.|..||++.|+++.+
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~i--- 226 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYL--- 226 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeec---
Confidence 998 67778888999999999999998 7788899999999999999999865544 44 45689999999999988
Q ss_pred CCCCCCCCcceEEEccCCcCc
Q 040154 521 PGTDCGFPKLRIIDISSNRFI 541 (600)
Q Consensus 521 ~~~~~~~~~L~~L~l~~N~~~ 541 (600)
+..|..+..|++|-|.+||++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred chhhhhhhhheeeeeccCCCC
Confidence 555689999999999999997
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.3e-11 Score=111.71 Aligned_cols=134 Identities=26% Similarity=0.282 Sum_probs=106.1
Q ss_pred cCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEE
Q 040154 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFL 483 (600)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 483 (600)
...|+++|+|+|.|+ .+..+..-.|+ ++.|++++|+|..+ +.+..+++|+.||||+|.++.. ...=..+-+.+.|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccc-eeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence 456899999999998 55666666776 99999999999754 4477899999999999998843 3333567788999
Q ss_pred eCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCC
Q 040154 484 DLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP 545 (600)
Q Consensus 484 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~ 545 (600)
.|++|.|... ..+..+=+|..||+++|+|.....-. ..+++|-|.++.+.+||+.+..+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc-ccccccHHHHHhhcCCCccccch
Confidence 9999999765 56778889999999999998764322 23678999999999999986544
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=1.1e-10 Score=124.59 Aligned_cols=113 Identities=29% Similarity=0.429 Sum_probs=89.1
Q ss_pred CceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|++|+|++|++++.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccceeecCCCCCCCCCCcceEEEccCCcCcccCC
Q 040154 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP 545 (600)
Q Consensus 512 n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~ 545 (600)
|++++..|..+. ....++..+++.+|+..|.+|
T Consensus 500 N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHh-hccccCceEEecCCccccCCC
Confidence 888877665442 113456678888888877665
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=2.3e-10 Score=81.82 Aligned_cols=59 Identities=42% Similarity=0.537 Sum_probs=31.5
Q ss_pred CccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCcc
Q 040154 455 WLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNK 513 (600)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 513 (600)
+|++|++++|+++...+..|.++++|++|++++|+++.+.+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444455555555555555555555555555555555555555554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=5e-10 Score=114.38 Aligned_cols=133 Identities=38% Similarity=0.494 Sum_probs=64.1
Q ss_pred hhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCC
Q 040154 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNL 480 (600)
Q Consensus 401 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 480 (600)
+..++.|+.|++++|+++. +|......+ .|+.|++++|++.. +|.....+..|++|.+++|.+. ..+..+.+++.+
T Consensus 159 ~~~l~~L~~L~l~~N~l~~-l~~~~~~~~-~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l 234 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSD-LPKLLSNLS-NLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL 234 (394)
T ss_pred hhccccccccccCCchhhh-hhhhhhhhh-hhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc
Confidence 3345555555555555552 222222333 25555555555542 2222223344555555555432 233445555555
Q ss_pred cEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcc
Q 040154 481 EFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIG 542 (600)
Q Consensus 481 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~ 542 (600)
..+.+.+|++... +..++.+++++.|++++|.++.+.. ......++.|++++|.+..
T Consensus 235 ~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 235 SGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccCCceeeec-cchhccccccceecccccccccccc----ccccCccCEEeccCccccc
Confidence 5555555555432 3444555555555555555555522 2344555555555555543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=5.4e-10 Score=114.12 Aligned_cols=194 Identities=42% Similarity=0.565 Sum_probs=120.0
Q ss_pred EEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCC-CCCEEEccCccCCCCcchhcCCCCCCCEEEccCC
Q 040154 49 ELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLS-SLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGN 127 (600)
Q Consensus 49 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~ 127 (600)
.+++..+.+. .....+..++.++.|++.+|.+. .++....... +|+.|++++|++... +..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 4666666653 22223444566777777777665 3444444453 677777777776642 234566777777777777
Q ss_pred ccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCc
Q 040154 128 KISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPS 207 (600)
Q Consensus 128 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 207 (600)
++.. .+......+.|+.|++++|.+..... .......|+++.+++|.+.. .+..+..+..+..+.+.+|++.. .+.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeee-ccc
Confidence 7763 33333366677777777777664332 22334457777777774332 23456667777777777777653 245
Q ss_pred cccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCcccc
Q 040154 208 TIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSG 251 (600)
Q Consensus 208 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 251 (600)
.+..++.++.|++++|.++.... +....+++.|+++++.+..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 66677778888888887775544 6677778888888877664
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=7.4e-10 Score=118.34 Aligned_cols=108 Identities=30% Similarity=0.489 Sum_probs=93.5
Q ss_pred CCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCC
Q 040154 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486 (600)
Q Consensus 407 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 486 (600)
++.|+|++|.+.+.+|..+..++. |+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+.++++|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~-L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCC-CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 677889999998888888888885 9999999999988888888999999999999999999999999999999999999
Q ss_pred CCcccccCCcccCCC-CCCCEEEccCccce
Q 040154 487 NNQISDTFPSWLGAL-PNLNILILQSNKFH 515 (600)
Q Consensus 487 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~ 515 (600)
+|++++.+|..+... .++..+++++|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999998888887753 56788888888743
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=4.3e-11 Score=108.32 Aligned_cols=138 Identities=21% Similarity=0.207 Sum_probs=109.7
Q ss_pred hhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCC
Q 040154 423 HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALP 502 (600)
Q Consensus 423 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 502 (600)
.....|.. |++++|++|.|+. +-+...-.+.++.|++|+|.+... ..++.+++|+.||||+|.++.+ ..|=..+-
T Consensus 278 ~~~dTWq~-LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLG 352 (490)
T KOG1259|consen 278 VSADTWQE-LTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLG 352 (490)
T ss_pred EecchHhh-hhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhc
Confidence 34445665 9999999999984 345667789999999999999854 3489999999999999999854 34556789
Q ss_pred CCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccceeeccCcceeeeee
Q 040154 503 NLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTSGLVTGLVL 569 (600)
Q Consensus 503 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 569 (600)
+.+.|.|++|.|.+.. .. ..+-+|..||+++|++...-.....+.++.|+.+.+-+++....+
T Consensus 353 NIKtL~La~N~iE~LS--GL--~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLS--GL--RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred CEeeeehhhhhHhhhh--hh--HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999999999987662 22 456789999999999986555566788888999888888765444
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=1.4e-09 Score=77.69 Aligned_cols=61 Identities=38% Similarity=0.600 Sum_probs=55.9
Q ss_pred CCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcC
Q 040154 478 SNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRF 540 (600)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~ 540 (600)
++|++|++++|+++.+.+.+|.++++|++|++++|+++.+.+.. +.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA--FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT--TTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH--HcCCCCCCEEeCcCCcC
Confidence 57999999999999999999999999999999999999996654 48899999999999985
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.2e-10 Score=119.07 Aligned_cols=195 Identities=33% Similarity=0.337 Sum_probs=82.6
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEE
Q 040154 44 LGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILD 123 (600)
Q Consensus 44 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 123 (600)
+..++.++++.|.+.. +...+..+.+|..|++..|.+.... ..+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3344444444444442 1222444444555555554443221 1133444555555555554433 1233334455555
Q ss_pred ccCCccccccCcccCCCCCCCEEEccCCCCCCcch-hhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccc
Q 040154 124 LSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFS-VSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 124 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
+++|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 555554422 223334555555555555443322 1 23445555555555554433 22222333333344455443
Q ss_pred cCCCccccCCCC--CcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccc
Q 040154 203 GNLPSTIGNLRS--LETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250 (600)
Q Consensus 203 ~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 250 (600)
... .+..+.. |+.+++++|.+.... ..+..+..+..+++.++.+.
T Consensus 222 ~~~--~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 222 KLE--GLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ecc--CcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccc
Confidence 221 1111121 455555555544221 23444455555555555544
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=5.5e-11 Score=116.89 Aligned_cols=196 Identities=34% Similarity=0.483 Sum_probs=139.5
Q ss_pred CCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCE
Q 040154 18 GNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKA 97 (600)
Q Consensus 18 ~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 97 (600)
..++.-...|++.|.+. .+|..+..+..|+.+.++.|.+. .+|.++.++..|.+++++.|.+. ..|..+..|+ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 34555667788888877 67777777778888888888887 77778888888888888888776 6666677665 788
Q ss_pred EEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCC
Q 040154 98 LVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSF 177 (600)
Q Consensus 98 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 177 (600)
|-+++|+++. .|..++..+.|.+||.+.|.+. .+|.-+.++.+|+.|.+..|++.... ..+. .-.|..|+++.|++
T Consensus 148 li~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCNKI 223 (722)
T ss_pred EEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccCce
Confidence 8888887764 4555667778888888888876 45666777888888888888776443 3343 44577888888887
Q ss_pred cccCCccccCCCCCcEEeccccccccCCCcccc---CCCCCcEEEecCC
Q 040154 178 LGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIG---NLRSLETLDISSC 223 (600)
Q Consensus 178 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n 223 (600)
.. +|..|.+|..|++|-|.+|.+.. .|..+. ...-.++|+...|
T Consensus 224 s~-iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SY-LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ee-cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 64 46778888888888888888763 333222 2233466666666
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=1.4e-09 Score=118.65 Aligned_cols=201 Identities=29% Similarity=0.330 Sum_probs=106.3
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCC--CCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNE--LSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
...+.+.+.++.+.. .+. -..+++|+.|-+..|. +.....+.|..++.|++||+++|.-.+.+|..++.+-+||+|
T Consensus 523 ~~~rr~s~~~~~~~~-~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhh-ccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 455666666655541 112 1234467777666664 443444446667777777777665555677777777777777
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCC--CCcchhhcCCCCCCCEEEecCCC
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQL--SGDFSVSTGNLTSLKRLSLESCS 176 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~ 176 (600)
+++++.+. .+|..++++..|.+|++..+......+.....+.+|++|.+..... +......+..+.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 77777666 4566677777777777766654434444455567777776655431 11222233444555555443332
Q ss_pred CcccCCccccCCCCCc----EEeccccccccCCCccccCCCCCcEEEecCCcCCC
Q 040154 177 FLGKLPPSVGNLTQLQ----WLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227 (600)
Q Consensus 177 ~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 227 (600)
. .. -..+..++.|. .+.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus 680 ~-~~-~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 680 V-LL-LEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred h-Hh-HhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 2 00 01112222222 2222222211 233455566677777777776653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=5.4e-10 Score=114.16 Aligned_cols=150 Identities=30% Similarity=0.353 Sum_probs=66.9
Q ss_pred CCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEE
Q 040154 68 LSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELD 147 (600)
Q Consensus 68 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 147 (600)
+..++.+++..|.+.. .-..+..+.+|..|++.+|.+..... .+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3344444444444432 11223444555555555555543211 134455555555555555432 2234444455555
Q ss_pred ccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCC-ccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCC
Q 040154 148 LSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLP-PSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS 226 (600)
Q Consensus 148 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 226 (600)
+++|.|... ..+..++.|+.+++++|.+....+ . ...+..++.+++.+|.+... ..+..+..+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 555555432 222334555555555555544422 1 34445555555555554322 22223333333344444444
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=3.6e-09 Score=115.55 Aligned_cols=107 Identities=37% Similarity=0.408 Sum_probs=67.1
Q ss_pred CCCcEEECCCCC--CCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 21 SKLIYLDLSSNQ--LSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 21 ~~L~~L~Ls~~~--l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
+.|++|-+.++. +....+..|..++.|++|||++|.--+.+|..++.+-+||+|+++++.+. .+|..++++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666666664 44344455666777777777765544466666777777777777766665 666666677777777
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCCc
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNK 128 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 128 (600)
++..+.....++.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 766665544445555556677776665543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=9e-10 Score=111.43 Aligned_cols=104 Identities=28% Similarity=0.301 Sum_probs=45.7
Q ss_pred CceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
++.|+|++|++++.. .+..++.|++|||++|.+.....-.-.+|+ |..|.+++|.++.. ..+.++.+|+.||++.
T Consensus 189 le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSY 263 (1096)
T ss_pred hhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhH
Confidence 555555555554332 344445555555555555422222222333 55555555555433 2344455555555555
Q ss_pred ccceeecCCCCCCCCCCcceEEEccCCcCc
Q 040154 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFI 541 (600)
Q Consensus 512 n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~ 541 (600)
|-|.+...-. ....+..|+.|.|.|||+.
T Consensus 264 Nll~~hseL~-pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 264 NLLSEHSELE-PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhcchhhh-HHHHHHHHHHHhhcCCccc
Confidence 5544432111 1122344455555555544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.1e-09 Score=99.26 Aligned_cols=85 Identities=25% Similarity=0.287 Sum_probs=44.1
Q ss_pred CCcEEECCCCCCCCc-hhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCC-CC-CcchhccCCCCCCEE
Q 040154 22 KLIYLDLSSNQLSGE-IPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVF-SG-DMPAVIGNLSSLKAL 98 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L 98 (600)
.|++||||...|+.. .-.-++.|.+|+.|.+.++++.+.+...+++-..|+.|+++.+.- +. ...-.+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 456666666655521 222344556666666666666655555555556666666655532 11 111224555555556
Q ss_pred EccCccCC
Q 040154 99 VLSKTNFS 106 (600)
Q Consensus 99 ~L~~n~~~ 106 (600)
++++|...
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.9e-08 Score=91.45 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=42.6
Q ss_pred CCCCcEEEecCCcCCCC-CchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccc
Q 040154 212 LRSLETLDISSCNFSGP-IPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276 (600)
Q Consensus 212 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 276 (600)
+|++..+.+..|.+... ....+..+|.+..|+++.+.+..+-..+... .+++|..|.++++++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCccc
Confidence 45667777777766542 2244556677778888888877655555444 7888888888888653
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1e-09 Score=99.56 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=96.7
Q ss_pred CCCEEEccCCcccc-ccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCccc--CCccccCCCCCcEE
Q 040154 118 SLEILDLSGNKISG-ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK--LPPSVGNLTQLQWL 194 (600)
Q Consensus 118 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L 194 (600)
.|+++|++...++. .....++.|..|+.|.+.++++.+.+...++...+|+.|+++.|.-.+. ..-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666665542 1222355666666666666666666666666666666666666542221 11124566666666
Q ss_pred eccccccccCCC-ccccC-CCCCcEEEecCCcC--CC-CCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEE
Q 040154 195 GLASNNFSGNLP-STIGN-LRSLETLDISSCNF--SG-PIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLY 269 (600)
Q Consensus 195 ~l~~n~l~~~~~-~~l~~-l~~L~~L~L~~n~l--~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 269 (600)
+++.|.+..... ..+.. -++|+.|+++++.- .. .+......+|+|..||+++|.-....-...+. .++.|+++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence 666665542211 11111 14566677766531 11 12223346777777777776544332222333 677777777
Q ss_pred ccCCccceeeccCCCCCCCcccEEEecCCCC
Q 040154 270 LSSNRLSVHTKATSSTTSQKFGTVGLRSCNL 300 (600)
Q Consensus 270 l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l 300 (600)
++.|..-...........|.|.+|++.+|--
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 7777321111111122667788888776643
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=3e-09 Score=107.72 Aligned_cols=126 Identities=27% Similarity=0.291 Sum_probs=66.9
Q ss_pred CcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEcc
Q 040154 383 TRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLS 462 (600)
Q Consensus 383 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 462 (600)
|...+.+.|.+. .++.++.-++.++.|+|++|++++.. .+..++. |+.|||+.|.+..+.--...++. |..|.|+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~-LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPK-LKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhccc-ccccccccchhccccccchhhhh-heeeeec
Confidence 344444555544 33444555666666666666666432 4455554 66666666666533222222333 6666666
Q ss_pred CCccccccCcchhcCCCCcEEeCCCCcccccC-CcccCCCCCCCEEEccCccce
Q 040154 463 DNLLQGRIPRSLVNCSNLEFLDLGNNQISDTF-PSWLGALPNLNILILQSNKFH 515 (600)
Q Consensus 463 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 515 (600)
+|.++.. ..+.++++|+.||+++|-|.+-. -..+..+..|+.|.|.||++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666533 34566666666666666554311 011234556666666666654
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=5.5e-08 Score=88.49 Aligned_cols=186 Identities=17% Similarity=0.189 Sum_probs=101.2
Q ss_pred CCCCEEEccCCCCCCc--chhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccC-CCccccCCCCCcE
Q 040154 141 PSLEELDLSGNQLSGD--FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGN-LPSTIGNLRSLET 217 (600)
Q Consensus 141 ~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~ 217 (600)
..++.+|+.+|.|++. +...+.++|.|+.|+++.|++...+...-....+|++|-+.+..+.-. ....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 4444444444444431 122334455555555555554433221112344555555555544211 2233344555555
Q ss_pred EEecCCcCCCC--Cchhcc-CCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEE
Q 040154 218 LDISSCNFSGP--IPSSLR-NLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVG 294 (600)
Q Consensus 218 L~L~~n~l~~~--~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 294 (600)
|.++.|.+... ...... --+.+++|+...|....+.......+-+|++..+.+-.|++........+..++.+.-|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 55555532211 000011 113456666666655433344444556788888888888776665555555778888888
Q ss_pred ecCCCCCcc--chhhhCCCCCcEEECcCCCCCCC
Q 040154 295 LRSCNLTEF--PNFLKNQKNVAVLDLSSNRIHGK 326 (600)
Q Consensus 295 l~~~~l~~~--~~~l~~~~~L~~L~l~~n~l~~~ 326 (600)
++.+++.+. .+.+.+++.|+.|.++++++.+.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 888888733 35678888899898888887643
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.46 E-value=2.2e-08 Score=89.90 Aligned_cols=137 Identities=20% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCCEEEccCCCCCCcch----hhcCCCCCCCEEEecCCCCcccCC-----ccccCCCCCcEEeccccccccCC----Cc
Q 040154 141 PSLEELDLSGNQLSGDFS----VSTGNLTSLKRLSLESCSFLGKLP-----PSVGNLTQLQWLGLASNNFSGNL----PS 207 (600)
Q Consensus 141 ~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~----~~ 207 (600)
|.|++.....|++..... ..+..-..|+.+.+..|.|..... ..+..+.+|+.||+.+|.++-.. ..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 555555555555542211 112222456666666665542211 11234566666666666554321 22
Q ss_pred cccCCCCCcEEEecCCcCCCCCchhc------cCCCCCCEEEcCCCccccccchhHH-----hhcCCCCCEEEccCCccc
Q 040154 208 TIGNLRSLETLDISSCNFSGPIPSSL------RNLTQLSCLDLSRNHFSGGMELDVF-----LISLKNLEVLYLSSNRLS 276 (600)
Q Consensus 208 ~l~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~l~~n~~~~~~~~~~~-----~~~~~~L~~L~l~~n~~~ 276 (600)
++...+.|+.|.+.+|.++......+ ...|+|..|...+|...+.+....+ ..++|-|..+.+.+|++.
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 33344556677776666554322211 1246666666666665433222211 124556666667777654
Q ss_pred e
Q 040154 277 V 277 (600)
Q Consensus 277 ~ 277 (600)
.
T Consensus 317 E 317 (388)
T COG5238 317 E 317 (388)
T ss_pred h
Confidence 3
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=6.9e-08 Score=86.73 Aligned_cols=141 Identities=15% Similarity=0.017 Sum_probs=76.4
Q ss_pred CCCCCCCEEEecCCCCcccCC----ccccCCCCCcEEeccccccccCCC-----ccccCCCCCcEEEecCCcCCCCCc--
Q 040154 162 GNLTSLKRLSLESCSFLGKLP----PSVGNLTQLQWLGLASNNFSGNLP-----STIGNLRSLETLDISSCNFSGPIP-- 230 (600)
Q Consensus 162 ~~~~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~~~-- 230 (600)
++-|.|+......|++..-.. ..+.....|+++.+..|.|.-... ..+..+.+|+.|++.+|.++....
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 345677777777777653211 122333577777777776642211 123346677788887777664322
Q ss_pred --hhccCCCCCCEEEcCCCccccccchhHHh----hcCCCCCEEEccCCccceeeccCCC------CCCCcccEEEecCC
Q 040154 231 --SSLRNLTQLSCLDLSRNHFSGGMELDVFL----ISLKNLEVLYLSSNRLSVHTKATSS------TTSQKFGTVGLRSC 298 (600)
Q Consensus 231 --~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~------~~~~~L~~l~l~~~ 298 (600)
.++..-+.|++|.+.+|-++.......+. ...|+|..|..++|.+........+ ...|-|..+.+.+|
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 23334455777777777665432222111 1356777777777743222111111 14566666677777
Q ss_pred CCCc
Q 040154 299 NLTE 302 (600)
Q Consensus 299 ~l~~ 302 (600)
.+.+
T Consensus 314 r~~E 317 (388)
T COG5238 314 RIKE 317 (388)
T ss_pred cchh
Confidence 7663
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.31 E-value=2.7e-08 Score=94.77 Aligned_cols=277 Identities=22% Similarity=0.203 Sum_probs=132.1
Q ss_pred CCCEEEccCCCCCCC--CccccCCCCCCCEEEccccC-CCCCc-chhccCCCCCCEEEccCcc-CCCCc-chhcCCCCCC
Q 040154 46 SLKELDLSTNELSGR--LPSSIGNLSSLEKLDLSLNV-FSGDM-PAVIGNLSSLKALVLSKTN-FSSDL-PAFIGNLPSL 119 (600)
Q Consensus 46 ~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~L~L~~n~-~~~~~-~~~~~~~~~L 119 (600)
.|+.|.+++++-.+. .-....++|++++|++.+|. ++... ...-..+++|++|++..|. ++... ...-..|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455555555543221 11122455566666555553 11111 1112335666666665543 22211 1123345666
Q ss_pred CEEEccCCccc-cc-cCcccCCCCCCCEEEccCCCCCCc--chhhcCCCCCCCEEEecCCCCcccCC--ccccCCCCCcE
Q 040154 120 EILDLSGNKIS-GE-LPDFFGNLPSLEELDLSGNQLSGD--FSVSTGNLTSLKRLSLESCSFLGKLP--PSVGNLTQLQW 193 (600)
Q Consensus 120 ~~L~l~~~~~~-~~-~~~~l~~l~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~ 193 (600)
++|++++|.-. +. +.....+++.++.+...+|.-.+. +...-..+..+.++++.+|...+... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 66666665422 11 111234455555554444321110 00111233445555555554322211 11134566666
Q ss_pred Eecccccc-ccCCC-ccccCCCCCcEEEecCCc-CCCCCchhc-cCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEE
Q 040154 194 LGLASNNF-SGNLP-STIGNLRSLETLDISSCN-FSGPIPSSL-RNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLY 269 (600)
Q Consensus 194 L~l~~n~l-~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 269 (600)
++.+++.- ++..- ..-.++++|+.+-+..|+ +++.-...+ .+++.|+.+++..+....+..+......++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 66666532 11111 112345667777777764 332222222 245677777777776554444455555677777777
Q ss_pred ccCCccceee-cc--CCC-CCCCcccEEEecCCCCC--ccchhhhCCCCCcEEECcCCC
Q 040154 270 LSSNRLSVHT-KA--TSS-TTSQKFGTVGLRSCNLT--EFPNFLKNQKNVAVLDLSSNR 322 (600)
Q Consensus 270 l~~n~~~~~~-~~--~~~-~~~~~L~~l~l~~~~l~--~~~~~l~~~~~L~~L~l~~n~ 322 (600)
+++|...... .. ... -....+..+.+++|+.. ..-+.+..|++|+.+++.++.
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777422211 11 111 14556777777777666 334557778888888887765
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1.7e-08 Score=80.93 Aligned_cols=142 Identities=20% Similarity=0.199 Sum_probs=97.5
Q ss_pred CCCCeeeCCCCcccccCChhhhhccc--cCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcE
Q 040154 405 NFLEGLDLSRNNLSGLLPHCLGNISN--HLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEF 482 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 482 (600)
..+..+||+.|++. .++.....+.. .|+..+|++|.+.+..+..-...+..+.|+|++|.++ ..|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 44667888888776 44444433322 2666788888887443333345568888899999988 55666888899999
Q ss_pred EeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccc
Q 040154 483 LDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWN 553 (600)
Q Consensus 483 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 553 (600)
|+++.|.+. ..|..+..+.+|-.|+..+|.+-.+.-+- ..-+.....+++++++.+.++.+ ++.|+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl---~~s~~~al~~lgnepl~~~~~~k-lqa~k 170 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDL---FYSSLPALIKLGNEPLGDETKKK-LQALK 170 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHH---hccccHHHHHhcCCcccccCccc-ccccC
Confidence 999999886 45566666888888998888887663331 12233445566889999888843 56665
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=3e-06 Score=73.18 Aligned_cols=124 Identities=27% Similarity=0.316 Sum_probs=88.6
Q ss_pred CcEEECCCCCCCCchhhhhcC-CCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 23 LIYLDLSSNQLSGEIPASIGN-LGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 23 L~~L~Ls~~~l~~~~~~~~~~-l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
=+.++|++.++..+.. ++- ..+...+||++|.+... ..|..++.|.+|.+++|.|+.+.|..-..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 5678888877653211 222 34677899999988632 357888999999999999988888777778899999999
Q ss_pred CccCCCC-cchhcCCCCCCCEEEccCCccccccC---cccCCCCCCCEEEccC
Q 040154 102 KTNFSSD-LPAFIGNLPSLEILDLSGNKISGELP---DFFGNLPSLEELDLSG 150 (600)
Q Consensus 102 ~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~ 150 (600)
+|++... .-+-+..||+|+.|.+-+|.++..-. -.+..+|+|+.||+..
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9988652 12446778888888888888763211 1245677777777765
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=7.4e-06 Score=70.81 Aligned_cols=105 Identities=28% Similarity=0.267 Sum_probs=61.0
Q ss_pred CceEECCCCccccccCcccc-CCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEcc
Q 040154 432 LSILNLQHNKFFGTIPQTFL-GVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQ 510 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 510 (600)
=+++++.+.++..+. .++ -+.....+||++|.+... ..|..++.|.+|.|++|+|+.+.|..-..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchh--hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345666666554221 111 123455677777776533 346667777777777777777666555556677777777
Q ss_pred CccceeecCCCCCCCCCCcceEEEccCCcCc
Q 040154 511 SNKFHGIIREPGTDCGFPKLRIIDISSNRFI 541 (600)
Q Consensus 511 ~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~ 541 (600)
+|.|..+.. -.....+|.|+.|.+-+||..
T Consensus 97 nNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGD-LDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred Ccchhhhhh-cchhccCCccceeeecCCchh
Confidence 777655421 112234566666666666654
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.05 E-value=8.7e-06 Score=68.47 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCC
Q 040154 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 95 (600)
+|..+++|+.+.+.. .+..+...+|.++++|+.+.+..+ +......+|.++++++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555555555543 233334444555555555555443 3333333444444455555433 2222223334444444
Q ss_pred CEEEcc
Q 040154 96 KALVLS 101 (600)
Q Consensus 96 ~~L~L~ 101 (600)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.05 E-value=1.6e-07 Score=89.66 Aligned_cols=289 Identities=17% Similarity=0.124 Sum_probs=146.6
Q ss_pred CCcEEEecCCcCCCCC--chhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccC-CCCCCCcc
Q 040154 214 SLETLDISSCNFSGPI--PSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKAT-SSTTSQKF 290 (600)
Q Consensus 214 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L 290 (600)
-|+.|.++++.-.+.. -.....+|+++.|.+.++....+.....+...|+.|+.+++..|..-...... ..-.+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3677777776533321 23345677777777777776655555666667777777777775311111111 11145555
Q ss_pred cEEEecCCCCC---ccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEc
Q 040154 291 GTVGLRSCNLT---EFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDF 367 (600)
Q Consensus 291 ~~l~l~~~~l~---~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l 367 (600)
++++++.|... .+....+++..++.+...+|.-. ....+. .....
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~---------------------~~~~~--------- 266 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALL---------------------KAAAY--------- 266 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHH---------------------HHhcc---------
Confidence 55555555332 22233444444444444433211 000000 00000
Q ss_pred ccCcccccCCCCCCCCcEEEcccCcccccChh--hhhccCCCCeeeCCCCc-ccccCChhhhhccccCceEECCCCcc-c
Q 040154 368 SSNFLQGPLPIPPPRTRNYLISNNSLIGGIAP--WICNLNFLEGLDLSRNN-LSGLLPHCLGNISNHLSILNLQHNKF-F 443 (600)
Q Consensus 368 ~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~--~~~~~~~L~~L~L~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~i-~ 443 (600)
...+..+++..|........ .-..+..|+.|+.+++. +++..-..+..-..+|+.|-+..|+. +
T Consensus 267 ------------~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 267 ------------CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred ------------ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 01111122222221111111 12246677777777753 44333334433333588888888763 3
Q ss_pred cccCccc-cCCCCccEEEccCCccc--cccCcchhcCCCCcEEeCCCCcc-cccC----CcccCCCCCCCEEEccCccce
Q 040154 444 GTIPQTF-LGVEWLRMIDLSDNLLQ--GRIPRSLVNCSNLEFLDLGNNQI-SDTF----PSWLGALPNLNILILQSNKFH 515 (600)
Q Consensus 444 ~~~~~~~-~~l~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~Ls~n~l-~~~~----~~~~~~l~~L~~L~L~~n~l~ 515 (600)
+.-...+ .+.+.|+.+++.++... +.+...=.+|+.|++|.++++.. ++.. ...-.++..|+.+-|++++..
T Consensus 335 d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 335 DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 2211222 35677888888777543 22223335788899999988854 4331 122234778899999999865
Q ss_pred ee-cCCCCCCCCCCcceEEEccCCcCcccCChhh
Q 040154 516 GI-IREPGTDCGFPKLRIIDISSNRFIGKLPSKY 548 (600)
Q Consensus 516 ~~-~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~ 548 (600)
.. ..+.. ..+++|+.+++-+++-...-+...
T Consensus 415 ~d~~Le~l--~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 415 TDATLEHL--SICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hHHHHHHH--hhCcccceeeeechhhhhhhhhHH
Confidence 33 22222 456788888888876554444333
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2.9e-05 Score=76.48 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=17.1
Q ss_pred ccccCceEECCCCccccccCccccCCCCccEEEccCC
Q 040154 428 ISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDN 464 (600)
Q Consensus 428 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 464 (600)
+|.+|++|++++|... ..|..+ ..+|+.|+++.+
T Consensus 154 LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 154 ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIE 187 (426)
T ss_pred cCCcccEEEecCCCcc-cCcccc--cccCcEEEeccc
Confidence 3345666666666543 223222 145666666554
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4e-06 Score=54.56 Aligned_cols=38 Identities=53% Similarity=0.617 Sum_probs=19.1
Q ss_pred CCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 479 NLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 479 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
+|++|++++|+|+++. ..++.+++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCCC
Confidence 4555555555555432 2355555555555555555544
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.01 E-value=1.3e-05 Score=67.50 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=48.4
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCC
Q 040154 39 ASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPS 118 (600)
Q Consensus 39 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 118 (600)
.+|.++++|+.+.+.. .++.+...+|.++++|+.+.+..+ +......+|.++++|+.+.+.. .+.......|.++++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566666666666654 344444555666666666666553 4444445566665666666643 332223344555556
Q ss_pred CCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCC
Q 040154 119 LEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166 (600)
Q Consensus 119 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 166 (600)
|+.+++..+ +.......|.++ .|+.+.+.. .+.......|.++++
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 666555443 332333344444 555555443 223233344444433
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=4.7e-06 Score=54.22 Aligned_cols=38 Identities=47% Similarity=0.638 Sum_probs=23.3
Q ss_pred CccEEEccCCccccccCcchhcCCCCcEEeCCCCccccc
Q 040154 455 WLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDT 493 (600)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 493 (600)
+|++|++++|+++. +|..+.++++|++|++++|+|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 56666777776663 344566777777777777776644
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=8.1e-07 Score=71.53 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=47.5
Q ss_pred CCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCE
Q 040154 18 GNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKA 97 (600)
Q Consensus 18 ~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 97 (600)
.+..+|+..+|++|.+++..+..-...+.++.|++++|.|. .+|..++.++.|+.|+++.|.+. ..|..+..+.++-.
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 34445555566666655444444444455566666666655 44555556666666666665554 44444444555555
Q ss_pred EEccCccCCC
Q 040154 98 LVLSKTNFSS 107 (600)
Q Consensus 98 L~L~~n~~~~ 107 (600)
|+..+|.+..
T Consensus 128 Lds~~na~~e 137 (177)
T KOG4579|consen 128 LDSPENARAE 137 (177)
T ss_pred hcCCCCcccc
Confidence 5555555443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=6.5e-06 Score=88.08 Aligned_cols=133 Identities=26% Similarity=0.299 Sum_probs=66.7
Q ss_pred CCCCEEEccCCCCC-CCCcccc-CCCCCCCEEEccccCCCC-CcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCE
Q 040154 45 GSLKELDLSTNELS-GRLPSSI-GNLSSLEKLDLSLNVFSG-DMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEI 121 (600)
Q Consensus 45 ~~L~~L~l~~~~i~-~~~~~~l-~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 121 (600)
.+|++|++++...- ...|..+ ..+|+|++|.+++-.+.. .......++|+|..||+++++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666654322 1122222 345666666665544321 2233345566666666666666544 44556666666
Q ss_pred EEccCCcccc-ccCcccCCCCCCCEEEccCCCCCCc------chhhcCCCCCCCEEEecCCCCcc
Q 040154 122 LDLSGNKISG-ELPDFFGNLPSLEELDLSGNQLSGD------FSVSTGNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 122 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~------~~~~~~~~~~L~~L~l~~n~~~~ 179 (600)
|.+.+-.+.. .....+..+++|+.||+|...-... ..+....+|+|+.|+.++..+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6665544432 1112345566666666665433221 11222345666666666655543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00025 Score=70.01 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=66.4
Q ss_pred CCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCC-ccccccCccccCCCCccEE
Q 040154 381 PRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHN-KFFGTIPQTFLGVEWLRMI 459 (600)
Q Consensus 381 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L 459 (600)
..++.|++++|.++.. | .-.++|++|.+++|.--..+|+.+ +.+|++|++++| .+. .+| .+|+.|
T Consensus 52 ~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cccceE
Confidence 5566777777755432 3 123457777777654333445433 235777777776 333 222 345666
Q ss_pred EccCCccccccCcchhcC-CCCcEEeCCCCc-ccc-cCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEcc
Q 040154 460 DLSDNLLQGRIPRSLVNC-SNLEFLDLGNNQ-ISD-TFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDIS 536 (600)
Q Consensus 460 ~L~~n~l~~~~~~~l~~~-~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~ 536 (600)
+++++.... +..+ ++|++|.+.+++ ... ..|.. -.++|++|++++|..... |..+ ..+|+.|+++
T Consensus 118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L-P~~L----P~SLk~L~ls 185 (426)
T PRK15386 118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL-PEKL----PESLQSITLH 185 (426)
T ss_pred EeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccC-cccc----cccCcEEEec
Confidence 666554321 1111 245555554322 110 01111 115678888877775532 2222 2567777777
Q ss_pred CC
Q 040154 537 SN 538 (600)
Q Consensus 537 ~N 538 (600)
.|
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.57 E-value=1.3e-05 Score=84.63 Aligned_cols=130 Identities=28% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCCCCEEEccCCCCCCC--CccccCCCCCCCEEEcccc-CCCCCc----chhccCCCCCCEEEccCcc-CCCCcchhcC-
Q 040154 44 LGSLKELDLSTNELSGR--LPSSIGNLSSLEKLDLSLN-VFSGDM----PAVIGNLSSLKALVLSKTN-FSSDLPAFIG- 114 (600)
Q Consensus 44 l~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~----~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~- 114 (600)
++.|+.|.+.++.-... .......++.|+.|+++++ ...... ......+++|+.|+++++. +++..-.++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532211 2233455666666666652 111111 1223345666666666665 4432222222
Q ss_pred CCCCCCEEEccCCc-cccccC-cccCCCCCCCEEEccCCCCCC-c-chhhcCCCCCCCEEEec
Q 040154 115 NLPSLEILDLSGNK-ISGELP-DFFGNLPSLEELDLSGNQLSG-D-FSVSTGNLTSLKRLSLE 173 (600)
Q Consensus 115 ~~~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~n~i~~-~-~~~~~~~~~~L~~L~l~ 173 (600)
.|++|+.|.+..|. +++... .....++.|++|+++++.... . ......++++++.+.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 26666666666555 332211 123456667777666654321 1 12223345555554433
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=4.9e-05 Score=68.83 Aligned_cols=104 Identities=30% Similarity=0.330 Sum_probs=48.0
Q ss_pred cCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEcccc--CCCCCcchhccCCCCCCEEEccCccCCCC-cchhcCCCCC
Q 040154 42 GNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLN--VFSGDMPAVIGNLSSLKALVLSKTNFSSD-LPAFIGNLPS 118 (600)
Q Consensus 42 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~ 118 (600)
..+..|+.|++.+..++.. ..+..+++|+.|.++.| ++.+.++.....+|+|+++++++|++... --..+..+++
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3344455555555544421 12444555555555555 44433333344445555555555555420 0122334455
Q ss_pred CCEEEccCCccccccCc----ccCCCCCCCEEEc
Q 040154 119 LEILDLSGNKISGELPD----FFGNLPSLEELDL 148 (600)
Q Consensus 119 L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 148 (600)
|..|++.+|..+. ..+ .|.-+++|+.|+-
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 5566666655442 111 2334455555543
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=0.00014 Score=77.97 Aligned_cols=151 Identities=26% Similarity=0.332 Sum_probs=104.6
Q ss_pred CCCcEEECCCCC-CCCchhhhhcC-CCCCCEEEccCCCCC-CCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCE
Q 040154 21 SKLIYLDLSSNQ-LSGEIPASIGN-LGSLKELDLSTNELS-GRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKA 97 (600)
Q Consensus 21 ~~L~~L~Ls~~~-l~~~~~~~~~~-l~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 97 (600)
.+|++||++|.. +....+..++. +|.|++|.+++-.+. +.+.....++|+|..||+|++.++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 478899999874 33344445544 799999999987764 23445567889999999999988644 67888999999
Q ss_pred EEccCccCCC-CcchhcCCCCCCCEEEccCCcccccc------CcccCCCCCCCEEEccCCCCCCcchhhc-CCCCCCCE
Q 040154 98 LVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKISGEL------PDFFGNLPSLEELDLSGNQLSGDFSVST-GNLTSLKR 169 (600)
Q Consensus 98 L~L~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~~~~L~~ 169 (600)
|.+.+=.+.. ..-..+-++++|++||+|..+..... .+.-..+|.|+.||.+++.+.......+ ..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9888777654 22245667999999999987654221 1222357899999999988876544333 33455555
Q ss_pred EEec
Q 040154 170 LSLE 173 (600)
Q Consensus 170 L~l~ 173 (600)
+..-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 4433
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=3.7e-05 Score=69.65 Aligned_cols=112 Identities=22% Similarity=0.226 Sum_probs=64.5
Q ss_pred ChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCC--ccccccCcchhcCCCCcEEeCCCCcccccC-Cccc
Q 040154 422 PHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDN--LLQGRIPRSLVNCSNLEFLDLGNNQISDTF-PSWL 498 (600)
Q Consensus 422 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~ 498 (600)
......+.. |+.|++.+.+++.. ..|..+++|+.|+++.| .+.+..+.....+++|++|++++|+|..+. -.-+
T Consensus 36 ~gl~d~~~~-le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 36 GGLTDEFVE-LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred ccccccccc-hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 334444443 66677777766533 35556777777777777 555555555566677777777777775311 1224
Q ss_pred CCCCCCCEEEccCccceeecC-CCCCCCCCCcceEEEcc
Q 040154 499 GALPNLNILILQSNKFHGIIR-EPGTDCGFPKLRIIDIS 536 (600)
Q Consensus 499 ~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~l~ 536 (600)
+.+++|.+|++.+|..+.... ....|.-+++|++||-.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 456667777777777665311 11122334566665543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=1.6e-05 Score=72.21 Aligned_cols=100 Identities=24% Similarity=0.261 Sum_probs=67.2
Q ss_pred CCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCc-chhccCCCCCCEE
Q 040154 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM-PAVIGNLSSLKAL 98 (600)
Q Consensus 20 l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L 98 (600)
+.+.+.|++-||+++++ ....+|+.|++|.|+-|+|+... .+..|++|+.|.|..|.|.... -.-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677788888888765 55677888888888888887442 4777888888888888775322 1336677778887
Q ss_pred EccCccCCCCcc-----hhcCCCCCCCEEE
Q 040154 99 VLSKTNFSSDLP-----AFIGNLPSLEILD 123 (600)
Q Consensus 99 ~L~~n~~~~~~~-----~~~~~~~~L~~L~ 123 (600)
-|..|.-.+..+ ..+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777776544322 2344566666665
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.13 E-value=6.8e-05 Score=79.04 Aligned_cols=111 Identities=28% Similarity=0.236 Sum_probs=58.4
Q ss_pred CCCCCCEEEccCccCCCC--cchhcCCCCCCCEEEccCC-cccccc----CcccCCCCCCCEEEccCCC-CCCcchhhcC
Q 040154 91 NLSSLKALVLSKTNFSSD--LPAFIGNLPSLEILDLSGN-KISGEL----PDFFGNLPSLEELDLSGNQ-LSGDFSVSTG 162 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~ 162 (600)
.++.|+.+.+..+.-... .......++.|+.|+++++ ...... ......++.|+.++++++. +++..-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666643332 2344555667777777652 111111 1123455667777777665 5444333333
Q ss_pred -CCCCCCEEEecCCC-CcccC-CccccCCCCCcEEecccccc
Q 040154 163 -NLTSLKRLSLESCS-FLGKL-PPSVGNLTQLQWLGLASNNF 201 (600)
Q Consensus 163 -~~~~L~~L~l~~n~-~~~~~-~~~l~~l~~L~~L~l~~n~l 201 (600)
.+++|+.|.+.+|. +++.. ......++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766665 33321 12234566677777776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.0002 Score=65.18 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=81.5
Q ss_pred CCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcce
Q 040154 452 GVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLR 531 (600)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 531 (600)
.+.+.+.|++.|+.+.++ .....++.|++|.||-|+|+...| |..+++|++|+|+.|.|.++.. -.-..++|+|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhh
Confidence 356778899999999865 356789999999999999987744 8899999999999999988732 12246789999
Q ss_pred EEEccCCcCcccCCh----hhHhccccceeec
Q 040154 532 IIDISSNRFIGKLPS----KYFQCWNAMQVVN 559 (600)
Q Consensus 532 ~L~l~~N~~~~~~~~----~~~~~~~~l~~~~ 559 (600)
.|-|..||=.|.-+. ..+..+++|++++
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999997665542 3466678888875
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.007 Score=32.54 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=5.4
Q ss_pred CcEEeCCCCccc
Q 040154 480 LEFLDLGNNQIS 491 (600)
Q Consensus 480 L~~L~Ls~n~l~ 491 (600)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.85 E-value=0.014 Score=31.30 Aligned_cols=19 Identities=47% Similarity=0.653 Sum_probs=9.9
Q ss_pred ccEEEccCCccccccCcchh
Q 040154 456 LRMIDLSDNLLQGRIPRSLV 475 (600)
Q Consensus 456 L~~L~L~~n~l~~~~~~~l~ 475 (600)
|++|||++|+++ .+|..|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666555 3443344
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.74 E-value=0.00021 Score=73.29 Aligned_cols=182 Identities=28% Similarity=0.304 Sum_probs=105.4
Q ss_pred CCEEEccCCCCCCC----CccccCCCCCCCEEEccccCCCCCcchh----ccCC-CCCCEEEccCccCCC----Ccchhc
Q 040154 47 LKELDLSTNELSGR----LPSSIGNLSSLEKLDLSLNVFSGDMPAV----IGNL-SSLKALVLSKTNFSS----DLPAFI 113 (600)
Q Consensus 47 L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~L~~n~~~~----~~~~~~ 113 (600)
+..|.+.+|.+.+. +..++..++.|..|++++|.+....... +... ..+++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666666532 2233455666666666666665322221 1111 345556666666554 233445
Q ss_pred CCCCCCCEEEccCCcccc----ccCc----ccCCCCCCCEEEccCCCCCCcc----hhhcCCCCC-CCEEEecCCCCccc
Q 040154 114 GNLPSLEILDLSGNKISG----ELPD----FFGNLPSLEELDLSGNQLSGDF----SVSTGNLTS-LKRLSLESCSFLGK 180 (600)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~----~~~~----~l~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~-L~~L~l~~n~~~~~ 180 (600)
.....++.++++.|.+.. ..+. .+....++++|+++++.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556667777777666531 1111 2334567788888887766322 223344455 66688888877644
Q ss_pred ----CCccccCC-CCCcEEeccccccccCCC----ccccCCCCCcEEEecCCcCCCC
Q 040154 181 ----LPPSVGNL-TQLQWLGLASNNFSGNLP----STIGNLRSLETLDISSCNFSGP 228 (600)
Q Consensus 181 ----~~~~l~~l-~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~ 228 (600)
....+..+ ..+++++++.|.+++... ..+..++.++.+.++.|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 12234444 677889999998876533 3445667888999998887653
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.52 E-value=0.00037 Score=71.52 Aligned_cols=116 Identities=27% Similarity=0.269 Sum_probs=52.2
Q ss_pred hhccCCCCeeeCCCCcccc----cCChhhhh---ccccCceEECCCCcccccc----CccccCCCC-ccEEEccCCcccc
Q 040154 401 ICNLNFLEGLDLSRNNLSG----LLPHCLGN---ISNHLSILNLQHNKFFGTI----PQTFLGVEW-LRMIDLSDNLLQG 468 (600)
Q Consensus 401 ~~~~~~L~~L~L~~n~i~~----~~~~~~~~---~~~~L~~L~L~~n~i~~~~----~~~~~~l~~-L~~L~L~~n~l~~ 468 (600)
+.....++.++++.|.+.. .++..+.. ...++++|.+++|.++... ...+...+. +..|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 3345556666666665531 11112221 1123666666666554211 122223333 4446666665553
Q ss_pred c----cCcchhcC-CCCcEEeCCCCcccccCC----cccCCCCCCCEEEccCcccee
Q 040154 469 R----IPRSLVNC-SNLEFLDLGNNQISDTFP----SWLGALPNLNILILQSNKFHG 516 (600)
Q Consensus 469 ~----~~~~l~~~-~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~ 516 (600)
. ....+..+ ..+++++++.|.|+.... ..+..++.++.|.++.|++..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 11223333 455666666666644322 222334555566665555543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.01 Score=51.97 Aligned_cols=91 Identities=24% Similarity=0.238 Sum_probs=61.2
Q ss_pred ecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCC-CccccC-CCCCCCEEEcccc-CCCCCcchh
Q 040154 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGR-LPSSIG-NLSSLEKLDLSLN-VFSGDMPAV 88 (600)
Q Consensus 12 ~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~-~l~~L~~L~l~~n-~~~~~~~~~ 88 (600)
++|.....-..++.+|-+++.|..+.-.-+.+++.++.|.+.+|+--+. --+.++ -.++|+.|++++| .|++..-..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 4555555556788889999888876667778888888888888864321 111122 3467888888877 566555566
Q ss_pred ccCCCCCCEEEccC
Q 040154 89 IGNLSSLKALVLSK 102 (600)
Q Consensus 89 ~~~l~~L~~L~L~~ 102 (600)
+..+++|+.|.+.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 67777777776654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.17 E-value=0.1 Score=29.28 Aligned_cols=21 Identities=48% Similarity=0.555 Sum_probs=11.1
Q ss_pred CCCcEEeCCCCcccccCCccc
Q 040154 478 SNLEFLDLGNNQISDTFPSWL 498 (600)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~~~~~ 498 (600)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455555666665554444433
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.17 E-value=0.1 Score=29.28 Aligned_cols=21 Identities=48% Similarity=0.555 Sum_probs=11.1
Q ss_pred CCCcEEeCCCCcccccCCccc
Q 040154 478 SNLEFLDLGNNQISDTFPSWL 498 (600)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~~~~~ 498 (600)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455555666665554444433
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.48 E-value=0.14 Score=25.43 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=4.0
Q ss_pred CCCEEEccCccc
Q 040154 503 NLNILILQSNKF 514 (600)
Q Consensus 503 ~L~~L~L~~n~l 514 (600)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.98 E-value=0.0029 Score=56.32 Aligned_cols=87 Identities=26% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCC
Q 040154 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 95 (600)
.+..+...+.||++.+.+. -.-.-|+.++.+.+|+++.|.+. ..|.++.....++.+++..|..+ ..|..++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4555556666666666544 22233555566666666666665 55666666666666666555544 555566666666
Q ss_pred CEEEccCccC
Q 040154 96 KALVLSKTNF 105 (600)
Q Consensus 96 ~~L~L~~n~~ 105 (600)
+++++.++.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6666655543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.47 E-value=0.39 Score=26.86 Aligned_cols=19 Identities=53% Similarity=0.557 Sum_probs=9.3
Q ss_pred CCCcEEECCCCCCCCchhh
Q 040154 21 SKLIYLDLSSNQLSGEIPA 39 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~ 39 (600)
++|++|+|++|.|+.+.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555543333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.47 E-value=0.39 Score=26.86 Aligned_cols=19 Identities=53% Similarity=0.557 Sum_probs=9.3
Q ss_pred CCCcEEECCCCCCCCchhh
Q 040154 21 SKLIYLDLSSNQLSGEIPA 39 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~ 39 (600)
++|++|+|++|.|+.+.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555543333
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=0.062 Score=47.21 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=29.0
Q ss_pred CcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCC
Q 040154 215 LETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSN 273 (600)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 273 (600)
++.++-+++.|.......+..++.++.|.+.+|...++..++....-.++|++|++++|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 34444444444444444455555555555555554444444433333455555555555
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.09 E-value=0.3 Score=59.41 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=35.2
Q ss_pred EccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccc
Q 040154 508 ILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAM 555 (600)
Q Consensus 508 ~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l 555 (600)
||++|+|+.+.+. .|..+++|+.|+|++||+.|.|...||..|-.-
T Consensus 1 DLSnN~LstLp~g--~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 1 DISNNKISTIEEG--ICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCCcCCccChH--HhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 4677888777433 346778888999999999999998888888543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.08 E-value=0.16 Score=27.83 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=9.2
Q ss_pred CCCcEEECCCCCCCCchhh
Q 040154 21 SKLIYLDLSSNQLSGEIPA 39 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~ 39 (600)
++|++|++++|.|++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4566666666665544333
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.81 E-value=0.89 Score=25.47 Aligned_cols=14 Identities=57% Similarity=0.767 Sum_probs=6.8
Q ss_pred CCCcEEeCCCCccc
Q 040154 478 SNLEFLDLGNNQIS 491 (600)
Q Consensus 478 ~~L~~L~Ls~n~l~ 491 (600)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34455555555543
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.23 E-value=0.059 Score=48.32 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=36.1
Q ss_pred CceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
.+.||++.|++. .....|+-++.+..||++.|.+. ..|..+.....++.+++..|+.+ -.|.+++..+.++.+++.+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 444444444443 12223444444555555555544 34444444444445555444443 3334444445555544444
Q ss_pred cc
Q 040154 512 NK 513 (600)
Q Consensus 512 n~ 513 (600)
|.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 44
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.32 E-value=2.7 Score=24.01 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=10.0
Q ss_pred CCCcEEECCCCCCCC
Q 040154 21 SKLIYLDLSSNQLSG 35 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~ 35 (600)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 466777777777664
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.10 E-value=5.3 Score=22.20 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=8.0
Q ss_pred CCCcEEECCCC-CCCC
Q 040154 21 SKLIYLDLSSN-QLSG 35 (600)
Q Consensus 21 ~~L~~L~Ls~~-~l~~ 35 (600)
++|++|++++| .+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 45556666655 3443
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.32 E-value=21 Score=36.27 Aligned_cols=229 Identities=16% Similarity=-0.022 Sum_probs=111.0
Q ss_pred CCcEEECcCCCCCCCCChhHH----hccCCceecccccccCCCCCC-CccCCCCCCcEEEcccCcccccCC---------
Q 040154 312 NVAVLDLSSNRIHGKIPKWLL----EQNFSSLNLSHNLLTGLDQYP-VVCPWGNRPFSLDFSSNFLQGPLP--------- 377 (600)
Q Consensus 312 ~L~~L~l~~n~l~~~~~~~~~----~~~L~~L~ls~n~l~~~~~~~-~~~~~~~~~~~l~l~~n~~~~~~~--------- 377 (600)
.+.+++++.|...+.++.... ...++.++.+.-.+.....+. ...+........+++.|.....-.
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 577888888888877777652 233666666665554332221 112211112333444443321100
Q ss_pred --CCCCCCcEEEcccCcccccChhh-hh-----ccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCc-
Q 040154 378 --IPPPRTRNYLISNNSLIGGIAPW-IC-----NLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQ- 448 (600)
Q Consensus 378 --~~~~~l~~l~l~~n~~~~~~~~~-~~-----~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~- 448 (600)
..-+++ +|++..+......+.. +- ..+.=-.+|+..|...+.-....+..-.++++|.+.+|...+....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 001233 3444433332211111 00 0111124556665554322211111222588888888887654322
Q ss_pred -cccCCCCccEEEccCCcc---ccc--cC--cch--hcCCCCcEEeCCCCcccccCC---cccCCCCCCCEEEccCccce
Q 040154 449 -TFLGVEWLRMIDLSDNLL---QGR--IP--RSL--VNCSNLEFLDLGNNQISDTFP---SWLGALPNLNILILQSNKFH 515 (600)
Q Consensus 449 -~~~~l~~L~~L~L~~n~l---~~~--~~--~~l--~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 515 (600)
....-+..+.+++..-.- .+. .. .+. ..---+.++.++.|....-.. .....-+.+..|++++|.-.
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 334446677777755332 111 00 001 011246778888888754222 23445678999999999876
Q ss_pred eecCCC--CCCCCCCcceEEEccCCcCc
Q 040154 516 GIIREP--GTDCGFPKLRIIDISSNRFI 541 (600)
Q Consensus 516 ~~~~~~--~~~~~~~~L~~L~l~~N~~~ 541 (600)
...... .+......++.+..+.|...
T Consensus 454 d~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 454 DGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 653322 22234456777777777554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.41 E-value=52 Score=33.58 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=36.5
Q ss_pred CceEECCCCcccccc---CccccCCCCccEEEccCCcccc----ccCcchhcCCCCcEEeCCCCccc
Q 040154 432 LSILNLQHNKFFGTI---PQTFLGVEWLRMIDLSDNLLQG----RIPRSLVNCSNLEFLDLGNNQIS 491 (600)
Q Consensus 432 L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~ 491 (600)
+..+.++.|...... ......-+.+..|++++|.... .+|..++.-..++....+.|..+
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 667777777664221 1233345667888888887553 24455555566777777777654
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.87 E-value=5.1 Score=41.26 Aligned_cols=64 Identities=27% Similarity=0.196 Sum_probs=36.8
Q ss_pred CCCCccEEEccCCccccccC--cchhcCCCCcEEeCCCC--cccccCCcccC--CCCCCCEEEccCccceee
Q 040154 452 GVEWLRMIDLSDNLLQGRIP--RSLVNCSNLEFLDLGNN--QISDTFPSWLG--ALPNLNILILQSNKFHGI 517 (600)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~--~~l~~~~~L~~L~Ls~n--~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~ 517 (600)
+.+.+..+.|++|++..... ..-..-++|.+|+|++| .+... .++. +...|++|-+.||++..-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 34567777888887764321 11123467777888887 33322 2232 244577777777777654
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.03 E-value=8.8 Score=21.50 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=9.9
Q ss_pred CcccEEEecCCCCCccch
Q 040154 288 QKFGTVGLRSCNLTEFPN 305 (600)
Q Consensus 288 ~~L~~l~l~~~~l~~~~~ 305 (600)
++|+.|+.++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 345555555555555554
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.28 E-value=11 Score=38.95 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=6.5
Q ss_pred CCCcEEEecCCcCC
Q 040154 213 RSLETLDISSCNFS 226 (600)
Q Consensus 213 ~~L~~L~L~~n~l~ 226 (600)
+.+..++|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34444445555443
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.33 E-value=32 Score=43.22 Aligned_cols=40 Identities=35% Similarity=0.314 Sum_probs=24.2
Q ss_pred EecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHH
Q 040154 219 DISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF 258 (600)
Q Consensus 219 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 258 (600)
+|++|+|..+.+..|..+++|+.|+|++|++.+++.+..+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL 40 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARL 40 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHH
Confidence 3556666655556666666666666666666665555443
No 95
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=21.17 E-value=64 Score=17.98 Aligned_cols=12 Identities=42% Similarity=0.481 Sum_probs=5.9
Q ss_pred CCEEEcCCCccc
Q 040154 239 LSCLDLSRNHFS 250 (600)
Q Consensus 239 L~~L~l~~n~~~ 250 (600)
|++|++.+..+.
T Consensus 2 LKtL~L~~v~f~ 13 (26)
T PF07723_consen 2 LKTLHLDSVVFS 13 (26)
T ss_pred CeEEEeeEEEEC
Confidence 455555554443
Done!