Query 040154
Match_columns 600
No_of_seqs 323 out of 3728
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 08:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-61 8.4E-66 532.5 43.4 521 13-546 92-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-60 4.9E-65 526.5 40.4 529 6-545 109-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-56 8.9E-61 488.5 41.2 544 11-564 17-620 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-55 2.6E-59 476.9 49.2 548 6-559 34-641 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.4E-54 1.8E-58 463.9 39.1 509 11-554 25-573 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-53 6.4E-58 459.7 37.7 528 11-555 24-572 (606)
7 3t6q_A CD180 antigen; protein- 100.0 9.2E-52 3.1E-56 446.5 40.8 527 23-565 14-559 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-51 4.8E-56 459.4 32.9 520 11-553 17-572 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3E-50 1E-54 434.7 36.6 523 23-565 13-557 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 8.8E-49 3E-53 420.4 35.6 481 11-553 20-544 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-47 1.3E-51 423.6 39.8 518 24-564 7-558 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 9.6E-47 3.3E-51 402.4 35.5 493 26-555 10-525 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 4.2E-46 1.4E-50 399.6 36.7 504 23-565 9-530 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 5.4E-46 1.9E-50 404.3 35.4 529 12-553 45-592 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 7.4E-46 2.5E-50 392.6 29.6 463 24-553 3-494 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1E-45 3.6E-50 394.4 28.3 473 11-517 18-512 (549)
17 4eco_A Uncharacterized protein 100.0 5.6E-45 1.9E-49 392.9 17.4 433 21-542 81-601 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 4E-44 1.4E-48 392.0 23.2 442 21-542 323-865 (876)
19 4eco_A Uncharacterized protein 100.0 1.9E-44 6.6E-49 388.7 17.2 451 45-565 81-599 (636)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-43 1.2E-47 374.9 26.4 470 20-555 30-525 (562)
21 4g8a_A TOLL-like receptor 4; l 100.0 6.8E-42 2.3E-46 372.0 34.3 538 11-565 18-579 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 5.5E-43 1.9E-47 370.6 24.7 455 48-565 3-480 (520)
23 4ecn_A Leucine-rich repeat pro 100.0 2.4E-42 8.2E-47 377.9 28.1 431 5-517 331-866 (876)
24 3v47_A TOLL-like receptor 5B a 100.0 1.9E-40 6.6E-45 345.2 35.1 148 404-554 274-422 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-39 7.5E-44 345.7 30.4 445 12-517 45-512 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 9.3E-39 3.2E-43 332.5 30.1 387 24-519 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 4E-39 1.4E-43 332.1 19.9 200 19-250 9-208 (454)
28 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-37 3.7E-42 321.7 26.1 370 15-559 36-405 (457)
29 1jl5_A Outer protein YOPM; leu 100.0 5.3E-37 1.8E-41 316.2 20.8 403 43-545 9-415 (454)
30 1o6v_A Internalin A; bacterial 100.0 1.2E-34 4.1E-39 301.6 36.5 209 20-273 45-253 (466)
31 1o6v_A Internalin A; bacterial 100.0 2.3E-34 7.9E-39 299.4 35.4 346 44-517 45-390 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 3.5E-35 1.2E-39 307.1 26.1 138 405-546 224-361 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 2.5E-34 8.5E-39 300.7 27.4 92 400-492 243-334 (477)
34 3o6n_A APL1; leucine-rich repe 100.0 1.1E-33 3.7E-38 287.7 24.8 142 405-556 226-367 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-32 3.7E-37 284.3 30.0 347 65-563 38-384 (457)
36 3oja_B Anopheles plasmodium-re 100.0 4.6E-33 1.6E-37 298.4 24.9 140 406-555 233-372 (597)
37 4fmz_A Internalin; leucine ric 100.0 5.2E-31 1.8E-35 263.6 29.6 101 91-199 42-142 (347)
38 4fmz_A Internalin; leucine ric 100.0 6.2E-31 2.1E-35 263.1 30.1 307 16-347 39-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 4.2E-31 1.4E-35 268.6 26.9 311 19-348 43-353 (390)
40 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-34 1.1E-38 298.9 -0.1 211 21-250 3-240 (461)
41 3oja_B Anopheles plasmodium-re 100.0 2.2E-30 7.6E-35 277.6 27.3 310 19-347 49-358 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1E-33 3.4E-38 295.1 1.2 187 16-202 23-240 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-31 1.2E-35 260.0 12.2 249 21-274 50-302 (313)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 8E-34 249.7 24.5 289 21-322 33-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 8E-29 2.7E-33 245.7 27.0 289 21-321 31-329 (330)
46 1xku_A Decorin; proteoglycan, 100.0 8E-29 2.7E-33 245.7 26.1 279 11-299 44-330 (330)
47 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-31 2.2E-35 258.0 9.5 243 6-251 59-305 (313)
48 2ft3_A Biglycan; proteoglycan, 100.0 9.7E-29 3.3E-33 245.2 22.3 278 11-299 46-331 (332)
49 3ogk_B Coronatine-insensitive 100.0 9.2E-31 3.2E-35 281.6 7.5 202 67-271 110-326 (592)
50 2z66_A Variable lymphocyte rec 100.0 1.9E-28 6.4E-33 240.4 17.5 253 11-266 20-277 (306)
51 1ozn_A Reticulon 4 receptor; N 100.0 9.8E-28 3.4E-32 232.6 21.4 233 24-259 14-247 (285)
52 3zyi_A Leucine-rich repeat-con 100.0 1.6E-27 5.6E-32 246.8 24.1 234 21-256 75-309 (452)
53 3zyj_A Leucine-rich repeat-con 100.0 2.1E-27 7.3E-32 245.0 24.1 235 21-257 64-299 (440)
54 2z66_A Variable lymphocyte rec 100.0 2.4E-27 8.3E-32 232.4 21.5 262 192-553 10-273 (306)
55 3ogk_B Coronatine-insensitive 100.0 5.4E-30 1.8E-34 275.7 2.2 378 90-517 109-528 (592)
56 2z80_A TOLL-like receptor 2, v 99.9 1.7E-27 5.9E-32 238.3 16.6 284 14-302 24-315 (353)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-27 5.2E-32 231.3 15.0 215 11-227 24-239 (285)
58 4fcg_A Uncharacterized protein 99.9 5.3E-27 1.8E-31 231.4 18.9 226 20-250 80-314 (328)
59 2z80_A TOLL-like receptor 2, v 99.9 8.2E-27 2.8E-31 233.4 18.9 285 41-328 27-318 (353)
60 2p1m_B Transport inhibitor res 99.9 3.3E-29 1.1E-33 269.7 0.3 245 25-273 47-324 (594)
61 3zyj_A Leucine-rich repeat-con 99.9 4.7E-26 1.6E-30 234.9 23.5 248 22-276 44-292 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 4.2E-26 1.4E-30 236.2 23.1 248 22-276 55-303 (452)
63 4fcg_A Uncharacterized protein 99.9 6.7E-26 2.3E-30 223.6 17.9 211 12-226 95-314 (328)
64 2p1m_B Transport inhibitor res 99.9 8.1E-28 2.8E-32 258.9 -0.8 266 48-320 46-347 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-26 6.2E-31 227.0 7.2 243 16-273 29-272 (317)
66 2z62_A TOLL-like receptor 4, v 99.9 3.5E-24 1.2E-28 206.5 20.7 226 25-254 11-241 (276)
67 1wwl_A Monocyte differentiatio 99.9 6.1E-26 2.1E-30 222.7 7.7 248 17-276 39-309 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-25 4.5E-30 220.8 9.9 236 287-561 33-270 (317)
69 2z62_A TOLL-like receptor 4, v 99.9 3.1E-24 1.1E-28 206.9 18.4 214 11-227 20-238 (276)
70 1wwl_A Monocyte differentiatio 99.9 2.6E-26 9E-31 225.3 3.8 202 43-250 93-309 (312)
71 3oja_A Leucine-rich immune mol 99.9 2.1E-25 7.3E-30 231.9 10.4 239 18-271 31-270 (487)
72 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-23 1.9E-27 217.9 28.6 265 21-331 40-304 (622)
73 2o6q_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 198.5 23.9 205 22-253 17-221 (270)
74 2o6q_A Variable lymphocyte rec 99.9 3E-23 1E-27 199.0 23.2 189 12-202 30-218 (270)
75 3g06_A SSPH2 (leucine-rich rep 99.9 1E-22 3.5E-27 215.9 27.3 265 118-499 41-305 (622)
76 3oja_A Leucine-rich immune mol 99.9 2.9E-24 9.8E-29 223.5 14.4 235 287-560 33-269 (487)
77 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 5.8E-28 200.9 17.1 210 17-237 37-246 (272)
78 3m19_A Variable lymphocyte rec 99.9 2.8E-23 9.7E-28 196.9 18.0 189 363-554 17-206 (251)
79 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 5.8E-27 195.4 22.8 210 16-256 5-214 (290)
80 1p9a_G Platelet glycoprotein I 99.9 2.2E-22 7.7E-27 194.5 20.7 186 11-202 23-208 (290)
81 2ca6_A RAN GTPase-activating p 99.9 9.4E-25 3.2E-29 221.3 1.4 242 12-253 23-319 (386)
82 3rfs_A Internalin B, repeat mo 99.9 4E-23 1.4E-27 198.3 12.4 217 22-251 20-236 (272)
83 2xwt_C Thyrotropin receptor; s 99.9 1.4E-22 4.9E-27 190.6 14.8 196 46-247 32-236 (239)
84 2xwt_C Thyrotropin receptor; s 99.9 7.5E-22 2.6E-26 185.7 15.0 196 22-223 32-236 (239)
85 3goz_A Leucine-rich repeat-con 99.9 1.7E-23 5.8E-28 209.8 3.9 222 27-248 4-264 (362)
86 1h6u_A Internalin H; cell adhe 99.9 2.2E-21 7.4E-26 189.6 18.6 192 19-250 39-230 (308)
87 4glp_A Monocyte differentiatio 99.9 4.9E-22 1.7E-26 194.7 13.7 201 69-276 91-307 (310)
88 3m19_A Variable lymphocyte rec 99.9 6.7E-21 2.3E-25 180.5 20.3 178 22-202 15-192 (251)
89 2ast_B S-phase kinase-associat 99.9 2.6E-22 9.1E-27 199.4 10.9 222 22-247 48-282 (336)
90 1h6u_A Internalin H; cell adhe 99.9 4.2E-21 1.5E-25 187.5 18.6 194 42-277 38-231 (308)
91 2ca6_A RAN GTPase-activating p 99.9 3.4E-23 1.2E-27 209.9 3.4 240 36-276 23-316 (386)
92 3goz_A Leucine-rich repeat-con 99.9 8.8E-23 3E-27 204.6 5.6 248 5-252 6-299 (362)
93 4glp_A Monocyte differentiatio 99.8 1.6E-21 5.6E-26 191.0 10.7 227 20-251 63-308 (310)
94 2ast_B S-phase kinase-associat 99.8 4.6E-22 1.6E-26 197.7 4.7 234 16-253 63-309 (336)
95 2v9t_B SLIT homolog 2 protein 99.8 1.7E-20 5.9E-25 173.4 14.5 147 405-554 32-178 (220)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-20 8.7E-25 172.3 15.2 148 405-555 32-180 (220)
97 2o6s_A Variable lymphocyte rec 99.8 2.1E-20 7.3E-25 171.7 12.4 174 363-546 10-183 (208)
98 2xot_A Amphoterin-induced prot 99.8 1E-20 3.4E-25 189.4 10.4 183 363-548 21-209 (361)
99 2o6s_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 165.3 17.9 181 24-214 10-190 (208)
100 4ay9_X Follicle-stimulating ho 99.8 8.7E-20 3E-24 181.8 14.2 239 24-272 12-255 (350)
101 4ay9_X Follicle-stimulating ho 99.8 6.6E-19 2.3E-23 175.4 17.0 231 11-248 22-257 (350)
102 3e6j_A Variable lymphocyte rec 99.8 4.9E-19 1.7E-23 164.8 14.8 145 405-553 40-185 (229)
103 1h6t_A Internalin B; cell adhe 99.8 5.8E-19 2E-23 170.7 15.1 171 43-227 44-214 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 8E-19 2.8E-23 162.2 15.3 154 363-517 14-168 (220)
105 2v9t_B SLIT homolog 2 protein 99.8 8.1E-19 2.8E-23 162.2 15.2 153 363-516 14-166 (220)
106 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.1E-23 166.8 16.1 173 17-203 42-214 (291)
107 1w8a_A SLIT protein; signaling 99.8 2.3E-18 7.8E-23 155.5 13.7 142 408-555 11-153 (192)
108 3e6j_A Variable lymphocyte rec 99.8 7.1E-18 2.4E-22 156.9 16.0 153 363-517 22-174 (229)
109 1m9s_A Internalin B; cell inva 99.8 5.3E-18 1.8E-22 179.7 15.8 174 17-204 39-212 (605)
110 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5.3E-23 183.7 11.7 194 21-230 21-214 (605)
111 3cvr_A Invasion plasmid antige 99.8 1.2E-17 4E-22 174.9 17.9 180 46-253 60-246 (571)
112 2xot_A Amphoterin-induced prot 99.8 4.7E-18 1.6E-22 170.0 13.8 176 24-202 21-202 (361)
113 2wfh_A SLIT homolog 2 protein 99.8 7.5E-18 2.6E-22 152.0 13.3 141 408-555 13-153 (193)
114 4ezg_A Putative uncharacterize 99.7 1.2E-17 4.1E-22 151.6 12.8 153 42-202 41-194 (197)
115 3cvr_A Invasion plasmid antige 99.7 4.9E-17 1.7E-21 170.2 18.3 188 22-237 60-254 (571)
116 4ezg_A Putative uncharacterize 99.7 2.8E-17 9.7E-22 149.2 12.5 153 66-226 41-194 (197)
117 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.5E-22 158.5 10.0 170 19-203 17-186 (263)
118 3sb4_A Hypothetical leucine ri 99.7 2.6E-18 8.8E-23 169.7 4.8 273 11-294 13-327 (329)
119 3sb4_A Hypothetical leucine ri 99.7 9.9E-18 3.4E-22 165.4 8.4 241 20-269 48-327 (329)
120 2o6r_A Variable lymphocyte rec 99.7 1.1E-16 3.9E-21 142.5 12.9 141 407-553 9-150 (177)
121 1xeu_A Internalin C; cellular 99.7 4.4E-17 1.5E-21 154.9 9.2 171 43-228 17-187 (263)
122 4fdw_A Leucine rich hypothetic 99.7 3.8E-15 1.3E-19 149.9 22.0 215 21-246 113-332 (401)
123 1dce_A Protein (RAB geranylger 99.7 1.2E-18 4E-23 183.6 -4.8 205 285-535 346-567 (567)
124 4fdw_A Leucine rich hypothetic 99.7 3.8E-15 1.3E-19 149.9 20.3 246 15-274 130-381 (401)
125 4fs7_A Uncharacterized protein 99.6 2.3E-15 7.9E-20 152.4 17.5 95 432-533 299-393 (394)
126 2ell_A Acidic leucine-rich nuc 99.6 6.5E-16 2.2E-20 136.3 10.9 131 21-153 24-159 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 2.6E-16 8.8E-21 138.9 7.8 135 404-541 23-160 (168)
128 4fs7_A Uncharacterized protein 99.6 1.1E-14 3.6E-19 147.5 19.9 81 81-164 59-139 (394)
129 1dce_A Protein (RAB geranylger 99.6 3.2E-18 1.1E-22 180.3 -6.9 204 18-244 346-567 (567)
130 1w8a_A SLIT protein; signaling 99.6 2.8E-15 9.7E-20 135.1 13.4 130 24-156 11-141 (192)
131 2je0_A Acidic leucine-rich nuc 99.6 6.8E-16 2.3E-20 133.2 8.9 128 20-149 16-148 (149)
132 2je0_A Acidic leucine-rich nuc 99.6 4.6E-16 1.6E-20 134.3 6.0 131 404-537 16-149 (149)
133 2wfh_A SLIT homolog 2 protein 99.6 6.5E-15 2.2E-19 132.7 13.3 110 405-516 31-140 (193)
134 3g39_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 130.8 11.5 117 432-553 11-128 (170)
135 4b8c_D Glucose-repressible alc 99.6 4.1E-16 1.4E-20 169.5 4.1 191 21-223 173-369 (727)
136 2o6r_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 126.2 15.1 131 23-156 9-139 (177)
137 2r9u_A Variable lymphocyte rec 99.6 1.6E-14 5.6E-19 127.6 11.4 118 432-554 14-132 (174)
138 1a9n_A U2A', U2A'; complex (nu 99.5 6.9E-15 2.4E-19 130.7 7.9 137 401-542 15-154 (176)
139 4b8c_D Glucose-repressible alc 99.5 2.1E-15 7.2E-20 163.9 4.8 154 36-199 215-369 (727)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.2E-19 126.8 8.6 134 16-154 14-153 (176)
141 4gt6_A Cell surface protein; l 99.5 1.8E-12 6.1E-17 131.1 22.2 132 398-539 258-389 (394)
142 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 120.6 10.7 107 407-517 11-117 (170)
143 4gt6_A Cell surface protein; l 99.5 4.2E-12 1.4E-16 128.3 21.6 108 400-514 283-390 (394)
144 1ds9_A Outer arm dynein; leuci 99.5 9.5E-16 3.3E-20 139.2 -5.2 135 404-545 17-157 (198)
145 1ds9_A Outer arm dynein; leuci 99.5 7.6E-16 2.6E-20 139.8 -5.8 154 381-542 18-186 (198)
146 2r9u_A Variable lymphocyte rec 99.4 3.2E-13 1.1E-17 119.3 10.8 107 407-517 14-120 (174)
147 2ifg_A High affinity nerve gro 99.4 5.1E-13 1.7E-17 132.8 10.7 117 434-555 12-130 (347)
148 3un9_A NLR family member X1; l 99.3 5.5E-14 1.9E-18 140.1 -2.5 162 45-206 72-256 (372)
149 3un9_A NLR family member X1; l 99.3 1.4E-13 4.9E-18 137.1 -0.3 161 381-542 72-253 (372)
150 2ifg_A High affinity nerve gro 99.2 3.1E-11 1E-15 119.9 10.6 103 409-515 12-116 (347)
151 4h09_A Hypothetical leucine ri 99.2 1.5E-09 5.1E-14 109.1 22.6 112 401-517 236-347 (379)
152 4h09_A Hypothetical leucine ri 99.1 5E-09 1.7E-13 105.2 22.0 144 401-553 213-356 (379)
153 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.4E-14 107.5 6.1 84 163-248 250-341 (362)
154 2ra8_A Uncharacterized protein 98.9 9.3E-10 3.2E-14 108.5 3.9 180 40-224 134-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 3.8E-09 1.3E-13 93.9 1.6 117 38-154 29-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 6.3E-09 2.1E-13 92.5 2.1 94 397-491 28-136 (185)
157 3e4g_A ATP synthase subunit S, 98.5 4.4E-08 1.5E-12 84.5 3.3 94 11-104 51-150 (176)
158 3rw6_A Nuclear RNA export fact 98.4 3.3E-08 1.1E-12 92.2 0.8 83 475-559 167-257 (267)
159 3rw6_A Nuclear RNA export fact 98.3 7.4E-07 2.5E-11 83.1 6.4 75 432-508 172-257 (267)
160 3e4g_A ATP synthase subunit S, 98.3 3E-07 1E-11 79.2 2.9 84 45-128 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.9 1.6E-05 5.6E-10 65.4 5.7 70 481-554 11-81 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 2.4E-05 8.2E-10 68.7 2.4 86 454-539 70-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.6 4.8E-05 1.6E-09 66.8 4.0 114 39-152 35-168 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.00083 2.9E-08 55.0 5.5 36 479-514 32-67 (130)
165 2lz0_A Uncharacterized protein 79.1 3.5 0.00012 31.3 5.4 40 61-101 12-51 (100)
166 2lz0_A Uncharacterized protein 75.6 5.6 0.00019 30.1 5.7 46 466-512 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-61 Score=532.54 Aligned_cols=521 Identities=36% Similarity=0.491 Sum_probs=349.6
Q ss_pred cCcCCCCCCCCcEEECCCCCCCCchhh--hhcCCCCCCEEEccCCCCCCCCcccc-CCCCCCCEEEccccCCCCCcchh-
Q 040154 13 IPSSLGNLSKLIYLDLSSNQLSGEIPA--SIGNLGSLKELDLSTNELSGRLPSSI-GNLSSLEKLDLSLNVFSGDMPAV- 88 (600)
Q Consensus 13 l~~~~~~l~~L~~L~Ls~~~l~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~- 88 (600)
+|+.|+++++|++|||++|.+++.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 447889999999999999999877777 89999999999999999887777665 78999999999999988777766
Q ss_pred --ccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCC
Q 040154 89 --IGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166 (600)
Q Consensus 89 --~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 166 (600)
+.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..|. +..+++|++|++++|.+++..+..+..+++
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred hhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 7888999999999988876544 37788999999999998876666 888999999999999998888888888999
Q ss_pred CCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCC-CCCcEEEecCCcCCCCCchhccCCCCCCEEEcC
Q 040154 167 LKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNL-RSLETLDISSCNFSGPIPSSLRNLTQLSCLDLS 245 (600)
Q Consensus 167 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 245 (600)
|++|++++|.+.+..|.. .+++|++|++++|.+++..|..+... ++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 999999998887766553 67788888888888777777666654 778888888888777777777778888888888
Q ss_pred CCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCC-C---------------------------CCcccEEEecC
Q 040154 246 RNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSST-T---------------------------SQKFGTVGLRS 297 (600)
Q Consensus 246 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~---------------------------~~~L~~l~l~~ 297 (600)
+|.+.+.++...+. .+++|++|++++|.+. +..+... . +++|+.+++++
T Consensus 327 ~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 327 SNNFSGELPMDTLL-KMRGLKVLDLSFNEFS--GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp SSEEEEECCHHHHT-TCTTCCEEECCSSEEE--ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCcccCcCCHHHHh-cCCCCCEEeCcCCccC--ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 88776555544333 6777777777777432 2222211 1 34455555555
Q ss_pred CCCC-ccchhhhCCCCCcEEECcCCCCCCCCChhHH-hccCCceecccccccCCCCCCCccCCCCCCcEEEcccCccccc
Q 040154 298 CNLT-EFPNFLKNQKNVAVLDLSSNRIHGKIPKWLL-EQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGP 375 (600)
Q Consensus 298 ~~l~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~ 375 (600)
|.+. .+|..+..+++|+.|++++|.+++..|..+. .++|+.|++++|.+....+.. +.....+ +.+++++|.+++.
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L-~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTL-ETLILDFNDLTGE 481 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTC-CEEECCSSCCCSC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCc-eEEEecCCcccCc
Confidence 5555 4555555555666666666655555554442 244556666666555433221 2223333 5566666666555
Q ss_pred CCCC---CCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCcc---
Q 040154 376 LPIP---PPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQT--- 449 (600)
Q Consensus 376 ~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~--- 449 (600)
.|.. .++++.|++++|.+++.+|.++..+++|++|++++|++++.+|..+..++. |++|++++|++++.+|..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEESBCCGGGGT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccCCcCChHHhc
Confidence 4433 455666666666666666666666666666666666666566665555553 666666666555444322
Q ss_pred -------------------------------------------------------------------ccCCCCccEEEcc
Q 040154 450 -------------------------------------------------------------------FLGVEWLRMIDLS 462 (600)
Q Consensus 450 -------------------------------------------------------------------~~~l~~L~~L~L~ 462 (600)
+..+++|+.|||+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 2223445556666
Q ss_pred CCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcc
Q 040154 463 DNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIG 542 (600)
Q Consensus 463 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~ 542 (600)
+|+++|.+|..|.++++|++|+|++|++++.+|..|+.+++|++|+|++|++++..|..+ ..++.|+.||+++|+++|
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG--GGCCCCSEEECCSSEEEE
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECcCCcccc
Confidence 666655555555556666666666666655555555556666666666666655544433 445555666666666655
Q ss_pred cCCh
Q 040154 543 KLPS 546 (600)
Q Consensus 543 ~~~~ 546 (600)
.+|.
T Consensus 719 ~iP~ 722 (768)
T 3rgz_A 719 PIPE 722 (768)
T ss_dssp ECCS
T ss_pred cCCC
Confidence 5553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-60 Score=526.47 Aligned_cols=529 Identities=31% Similarity=0.416 Sum_probs=374.9
Q ss_pred cCCceeecCc--CCCCCCCCcEEECCCCCCCCchhhhh-cCCCCCCEEEccCCCCCCCCccc---cCCCCCCCEEEcccc
Q 040154 6 LKKKTGGIPS--SLGNLSKLIYLDLSSNQLSGEIPASI-GNLGSLKELDLSTNELSGRLPSS---IGNLSSLEKLDLSLN 79 (600)
Q Consensus 6 ~~~~~~~l~~--~~~~l~~L~~L~Ls~~~l~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~---l~~l~~L~~L~l~~n 79 (600)
...+.|.+|. .++++++|++|++++|.+++..+..+ .++++|++|++++|.+++..+.. +.++++|++|++++|
T Consensus 109 ~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 4456777777 78888888888888887765555544 66777777777777776655554 555555666655555
Q ss_pred CCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCC-----
Q 040154 80 VFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLS----- 154 (600)
Q Consensus 80 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~----- 154 (600)
.+.+..+ +..+++|++|++++|.+.+..|. ++++++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 189 ~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 189 KISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp EEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred cccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence 5543333 24455555555555555544443 555555555555555555444455555555555555555444
Q ss_pred -----------------CcchhhcCCC-CCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCcc-ccCCCCC
Q 040154 155 -----------------GDFSVSTGNL-TSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPST-IGNLRSL 215 (600)
Q Consensus 155 -----------------~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 215 (600)
+..+..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.. +..+++|
T Consensus 266 ~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 3333333332 45555555555555444555555555555555555554433332 4455555
Q ss_pred cEEEecCCcCCCCCchhccCCC-CCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCC-CCCcccEE
Q 040154 216 ETLDISSCNFSGPIPSSLRNLT-QLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTV 293 (600)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l 293 (600)
++|++++|.+.+..|..+..++ +|+.|++++|.+.+.+........+++|++|++++|.+ .+..+... .+++|+.|
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF--TGKIPPTLSNCSELVSL 423 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE--EEECCGGGGGCTTCCEE
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc--ccccCHHHhcCCCCCEE
Confidence 5555555555544444444444 55555555555544333222211256777777777743 33333334 78899999
Q ss_pred EecCCCCC-ccchhhhCCCCCcEEECcCCCCCCCCChhH-HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCc
Q 040154 294 GLRSCNLT-EFPNFLKNQKNVAVLDLSSNRIHGKIPKWL-LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNF 371 (600)
Q Consensus 294 ~l~~~~l~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~ 371 (600)
++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|+++...+. .+..++.+ +.+++++|.
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L-~~L~L~~N~ 501 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNL-NWISLSNNR 501 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTC-CEEECCSSC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCC-CEEEccCCc
Confidence 99999998 788899999999999999999999888877 457799999999999976543 23455556 999999999
Q ss_pred ccccCCCC---CCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhh---------------------
Q 040154 372 LQGPLPIP---PPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGN--------------------- 427 (600)
Q Consensus 372 ~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~--------------------- 427 (600)
+++..|.+ .++++.|++++|.+.+.+|..+.++++|+.|++++|++++.+|..+..
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 99888765 789999999999999999999999999999999999999888876533
Q ss_pred -------------------------------------------------ccccCceEECCCCccccccCccccCCCCccE
Q 040154 428 -------------------------------------------------ISNHLSILNLQHNKFFGTIPQTFLGVEWLRM 458 (600)
Q Consensus 428 -------------------------------------------------~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 458 (600)
++ +|++|++++|++++.+|..+.++++|+.
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB-CCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccc-cccEEECcCCcccccCCHHHhccccCCE
Confidence 23 4899999999999999999999999999
Q ss_pred EEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCC
Q 040154 459 IDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSN 538 (600)
Q Consensus 459 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N 538 (600)
|+|++|.++|.+|..|.++++|++|||++|++++.+|..++.+++|++|++++|++++.+|...++.. +....+.+|
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~---~~~~~~~gN 737 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET---FPPAKFLNN 737 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGG---SCGGGGCSC
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhcc---CCHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999887665444 444567888
Q ss_pred cCcccCC
Q 040154 539 RFIGKLP 545 (600)
Q Consensus 539 ~~~~~~~ 545 (600)
+.-|.-|
T Consensus 738 ~~Lcg~~ 744 (768)
T 3rgz_A 738 PGLCGYP 744 (768)
T ss_dssp TEEESTT
T ss_pred chhcCCC
Confidence 8766544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-56 Score=488.51 Aligned_cols=544 Identities=22% Similarity=0.189 Sum_probs=373.7
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+. +++++|++++|.+++..+.+|+++++|++|++++|.+++..|.+++++++|++|++++|.+.+..+..|+
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 45676665 6899999999999888888899999999999999999888888899999999999999988866666789
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcC--CCCCCC
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG--NLTSLK 168 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~--~~~~L~ 168 (600)
++++|++|++++|.+.+..+..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 999999999999998877778888999999999999998887788888899999999999988877766553 567889
Q ss_pred EEEecCCCCcccCCccccCC---------------------------CCCcEEeccccccccCCCccccCCCC--CcEEE
Q 040154 169 RLSLESCSFLGKLPPSVGNL---------------------------TQLQWLGLASNNFSGNLPSTIGNLRS--LETLD 219 (600)
Q Consensus 169 ~L~l~~n~~~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~ 219 (600)
+|++++|.+.+..+..+..+ +.|++|++++|.+.+..+..+..++. |+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 99999988887766655433 45777778888887777777777654 88888
Q ss_pred ecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccce------eecc-CCCC-CCCccc
Q 040154 220 ISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSV------HTKA-TSST-TSQKFG 291 (600)
Q Consensus 220 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~-~~~~-~~~~L~ 291 (600)
+++|.+.+..+..|..+++|++|++++|.+.+..+ ..+ ..+++|+.+++++|.... .... .... .+++|+
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccCh-hhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 88888887777788888888888888888765332 222 367888888887763221 0011 1122 567888
Q ss_pred EEEecCCCCCccc-hhhhCCCCCcEEECcCCCCCCC--CChhH---HhccCCceecccccccCCCCCCCccCCCCCCcEE
Q 040154 292 TVGLRSCNLTEFP-NFLKNQKNVAVLDLSSNRIHGK--IPKWL---LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSL 365 (600)
Q Consensus 292 ~l~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~~--~~~~~---~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l 365 (600)
.+++++|.+..++ .++..+++|+.|++++|.+... ....+ ...+++.|++++|+++.+.+. .+.....+ +.+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L-~~L 410 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD-AFSWLGHL-EVL 410 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT-TTTTCTTC-CEE
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh-hhhCCCCC-CEE
Confidence 8888888877443 4577788888888887764321 11111 123577777777777766542 22333444 677
Q ss_pred EcccCcccccCCC----CCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCccc--ccCChhhhhccccCceEECCC
Q 040154 366 DFSSNFLQGPLPI----PPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLS--GLLPHCLGNISNHLSILNLQH 439 (600)
Q Consensus 366 ~l~~n~~~~~~~~----~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~~~~~L~~L~L~~ 439 (600)
++++|.+.+..+. ..++++.+++++|.+.+..+..|..+++|+.|++++|.+. +..|..+..++. |++|++++
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~-L~~L~Ls~ 489 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-LTILDLSN 489 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT-CCEEECCS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC-CCEEECCC
Confidence 7777777654432 2566777777777766666666666666666666666654 344555555553 66666666
Q ss_pred CccccccCccccCCCCccEEEccCCccccccC--------cchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 440 NKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIP--------RSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 440 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
|+++++.+..|.++++|++|++++|.+++..+ ..|.++++|++|+|++|+++.+.+..|+++++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 66665555556666666666666666654321 1255566666666666666655445566666666666666
Q ss_pred ccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHh-ccccceeeccCcce
Q 040154 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQ-CWNAMQVVNTSGLV 564 (600)
Q Consensus 512 n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~-~~~~l~~~~~~~~~ 564 (600)
|+++++.+. .+..+++|+.|++++|++++ ++...|. .++.++.+++.+++
T Consensus 570 N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 570 NNLNTLPAS--VFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp SCCCCCCTT--TTTTCTTCCEEECTTSCCCB-CCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCCcCCHh--HhCCCCCCCEEECCCCcCCc-cChhHhcccccccCEEEccCCC
Confidence 666655332 22445566666666666553 3334444 45555555555553
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.7e-55 Score=476.86 Aligned_cols=548 Identities=23% Similarity=0.203 Sum_probs=459.4
Q ss_pred cCCceeecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCc
Q 040154 6 LKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM 85 (600)
Q Consensus 6 ~~~~~~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 85 (600)
...+.+..+.+|.++++|++|++++|.+++..+.+|+++++|++|++++|.+++..+.+|+++++|++|++++|.+.+..
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 34455555568999999999999999999999999999999999999999999666668999999999999999998888
Q ss_pred chhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccC--CCCCCCEEEccCCCCCCcchhhcCC
Q 040154 86 PAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFG--NLPSLEELDLSGNQLSGDFSVSTGN 163 (600)
Q Consensus 86 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~ 163 (600)
+..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 88999999999999999999988888899999999999999999876665543 5689999999999998877766554
Q ss_pred C---------------------------CCCCEEEecCCCCcccCCccccCCCC--CcEEeccccccccCCCccccCCCC
Q 040154 164 L---------------------------TSLKRLSLESCSFLGKLPPSVGNLTQ--LQWLGLASNNFSGNLPSTIGNLRS 214 (600)
Q Consensus 164 ~---------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~ 214 (600)
+ ++|++|++++|.+.+..+..+..++. |++|++++|.+++..+..+..+++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence 3 56888889999888888888887755 999999999999888889999999
Q ss_pred CcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccch-------hHHhhcCCCCCEEEccCCccceeeccCCCC-C
Q 040154 215 LETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMEL-------DVFLISLKNLEVLYLSSNRLSVHTKATSST-T 286 (600)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~ 286 (600)
|++|++++|.+.+..+..|..+++|+.|++++|...+.+.. ...+..+++|++|++++|.+.. .....+ .
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~ 351 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG--IKSNMFTG 351 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC--CCTTTTTT
T ss_pred ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC--CChhHhcc
Confidence 99999999999998899999999999999998765432111 1122378999999999996543 333333 7
Q ss_pred CCcccEEEecCCCCC--ccch-hhhC--CCCCcEEECcCCCCCCCCChhH-HhccCCceecccccccCCCCCCCccCCCC
Q 040154 287 SQKFGTVGLRSCNLT--EFPN-FLKN--QKNVAVLDLSSNRIHGKIPKWL-LEQNFSSLNLSHNLLTGLDQYPVVCPWGN 360 (600)
Q Consensus 287 ~~~L~~l~l~~~~l~--~~~~-~l~~--~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~ 360 (600)
+++|+.+++++|.+. .++. .+.. .++|+.|++++|.+++..+..+ ..++|+.|++++|.+....+...+.....
T Consensus 352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence 899999999999754 3332 2322 3689999999999998777666 45679999999999986554444555666
Q ss_pred CCcEEEcccCcccccCCCC---CCCCcEEEcccCccc--ccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceE
Q 040154 361 RPFSLDFSSNFLQGPLPIP---PPRTRNYLISNNSLI--GGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSIL 435 (600)
Q Consensus 361 ~~~~l~l~~n~~~~~~~~~---~~~l~~l~l~~n~~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L 435 (600)
+ +.+++++|.+.+..+.. .++++.+++++|.+. +..|..+..+++|+.|++++|.+++..+..+..++. |++|
T Consensus 432 L-~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~-L~~L 509 (680)
T 1ziw_A 432 I-FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK-LEIL 509 (680)
T ss_dssp C-CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEE
T ss_pred c-cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc-cCEE
Confidence 6 99999999998776544 689999999999986 567888999999999999999999888888888885 9999
Q ss_pred ECCCCccccccC--------ccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEE
Q 040154 436 NLQHNKFFGTIP--------QTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNIL 507 (600)
Q Consensus 436 ~L~~n~i~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 507 (600)
++++|++++..+ ..|.++++|++|+|++|.++...+..|.++++|++|+|++|+++++.+..|..+++|+.|
T Consensus 510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence 999999986532 237889999999999999996666789999999999999999999988889999999999
Q ss_pred EccCccceeecCCCCCCC-CCCcceEEEccCCcCcccCCh-hhHhccccceeec
Q 040154 508 ILQSNKFHGIIREPGTDC-GFPKLRIIDISSNRFIGKLPS-KYFQCWNAMQVVN 559 (600)
Q Consensus 508 ~L~~n~l~~~~~~~~~~~-~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~l~~~~ 559 (600)
+|++|+++++.+..+ . .+++|+.+++++||+.|.|+. .||..|-......
T Consensus 590 ~L~~N~l~~~~~~~~--~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~ 641 (680)
T 1ziw_A 590 NLQKNLITSVEKKVF--GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641 (680)
T ss_dssp ECTTSCCCBCCHHHH--HHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC---
T ss_pred ECCCCcCCccChhHh--cccccccCEEEccCCCcccCCccHHHHHHHHHhcCcc
Confidence 999999998854322 3 468999999999999999995 8888886544333
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.4e-54 Score=463.95 Aligned_cols=509 Identities=23% Similarity=0.203 Sum_probs=421.9
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+.. ++++|++++|.+++..+.+|+++++|++|++++|++.+..|.+|+++++|++|++++|.+.+..|..|+
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred ccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 467776664 799999999999988899999999999999999999988899999999999999999999988899999
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCC--
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK-- 168 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~-- 168 (600)
++++|++|++++|.+.+..+..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 999999999999999987778899999999999999999875545566699999999999999988888999999999
Q ss_pred EEEecCCCCcccCCccccCCCCCcEEeccccccc--------------------------cCCCccccCCC--CCcEEEe
Q 040154 169 RLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS--------------------------GNLPSTIGNLR--SLETLDI 220 (600)
Q Consensus 169 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--------------------------~~~~~~l~~l~--~L~~L~L 220 (600)
+|++++|.+.+..+..+.. ..|++|++++|... ...+..+..+. +|+.|++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred EEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 9999999999887766544 67888888876410 11112222332 6889999
Q ss_pred cCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCC
Q 040154 221 SSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCN 299 (600)
Q Consensus 221 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~ 299 (600)
++|.+.+..+..|..+++|++|++++|.+.. ++.. ...+++|++|++++|.+... .+... .+++|+.+++++|.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~--l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSG--LVGLSTLKKLVLSANKFENL--CQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSS--CCSCTTCCEEECTTCCCSBG--GGGCGGGCTTCSEEECCSCS
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccCC-CChh--hcccccCCEEECccCCcCcC--chhhhhccCcCCEEECCCCC
Confidence 9999998888889999999999999998873 3321 24788999999999965432 22223 67899999999998
Q ss_pred CC-ccch-hhhCCCCCcEEECcCCCCCCCC--ChhH-HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccc
Q 040154 300 LT-EFPN-FLKNQKNVAVLDLSSNRIHGKI--PKWL-LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQG 374 (600)
Q Consensus 300 l~-~~~~-~l~~~~~L~~L~l~~n~l~~~~--~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~ 374 (600)
+. .++. .+..+++|+.|++++|.+++.. +..+ ..++|++|++++|++....+...
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------- 396 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-------------------- 396 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--------------------
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--------------------
Confidence 87 5553 5888999999999999987643 3222 33456666666666654432210
Q ss_pred cCCCCCCCCcEEEcccCcccccChh-hhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccc---cCccc
Q 040154 375 PLPIPPPRTRNYLISNNSLIGGIAP-WICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGT---IPQTF 450 (600)
Q Consensus 375 ~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~---~~~~~ 450 (600)
...++++.+++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..++. |++|++++|++.+. .+..+
T Consensus 397 ---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 397 ---KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp ---TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT-CCEEECTTCBCGGGEECSSCGG
T ss_pred ---cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC-CCEEECCCCCCCccccccchhh
Confidence 1146788888888888876654 4888999999999999999888988988885 99999999999863 23678
Q ss_pred cCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcc
Q 040154 451 LGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKL 530 (600)
Q Consensus 451 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 530 (600)
..+++|++|++++|.+++..|..|.++++|++|+|++|++++..|.+|..+++| .|++++|++++..+..+ ..+++|
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~--~~l~~L 549 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL--PILSQQ 549 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH--HHHHTS
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc--ccCCCC
Confidence 999999999999999999999999999999999999999999999999999999 99999999998755433 567899
Q ss_pred eEEEccCCcCcccCChhhHhcccc
Q 040154 531 RIIDISSNRFIGKLPSKYFQCWNA 554 (600)
Q Consensus 531 ~~L~l~~N~~~~~~~~~~~~~~~~ 554 (600)
+.|++++|++.|.|+..+|..|-.
T Consensus 550 ~~L~l~~N~~~c~c~~~~~~~w~~ 573 (606)
T 3t6q_A 550 RTINLRQNPLDCTCSNIYFLEWYK 573 (606)
T ss_dssp SEEECTTCCEECSGGGHHHHHHHH
T ss_pred CEEeCCCCCccccCCcHHHHHHHH
Confidence 999999999999999888888864
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-53 Score=459.73 Aligned_cols=528 Identities=22% Similarity=0.195 Sum_probs=417.4
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
..+|..+. +++++|++++|.+++..+.+|+++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..|+
T Consensus 24 ~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 24 SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred ccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 45666554 6888888888888877777888888888888888888877788888888888888888888877788888
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCcccc-ccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCC--
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG-ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL-- 167 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L-- 167 (600)
++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+.+|
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 88888888888888887776778888888888888888875 457788888888888888888887766666655544
Q ss_pred --CEEEecCCCCcccCCccccCCCCCcEEeccccccc-cCCCccccCCCCCcEEEecCCcCCC------CCchhccCCC-
Q 040154 168 --KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS-GNLPSTIGNLRSLETLDISSCNFSG------PIPSSLRNLT- 237 (600)
Q Consensus 168 --~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~- 237 (600)
.+|++++|.+.+..+..+... +|++|++++|.+. +..+..+..++.++.+++..+.+.. .....+..+.
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 478888888887666655544 7888888888775 3456677788888887775443321 1122222222
Q ss_pred -CCCEEEc-CCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcE
Q 040154 238 -QLSCLDL-SRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAV 315 (600)
Q Consensus 238 -~L~~L~l-~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~ 315 (600)
.++.+++ ..+.+.+..+. ...+++|+.+++++|.+.... ....+++|+.+++++|.+..+|.+ .+++|+.
T Consensus 261 l~l~~l~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~ 332 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVK---FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKS 332 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGS---CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCE
T ss_pred ccHhheeccccccccccccc---cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC--CCCccce
Confidence 3555666 55555544332 347888999999988664332 233678899999999998888854 8889999
Q ss_pred EECcCCCCCCCCChhHHhccCCceecccccccCCCCC-CCccCCCCCCcEEEcccCcccccCCC--CCCCCcEEEcccCc
Q 040154 316 LDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQY-PVVCPWGNRPFSLDFSSNFLQGPLPI--PPPRTRNYLISNNS 392 (600)
Q Consensus 316 L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~~~~~~l~l~~n~~~~~~~~--~~~~l~~l~l~~n~ 392 (600)
|++++|...+.. .....++|+.|++++|.++..... ......+.+ +.+++++|.+.+.... ..++++.|++++|.
T Consensus 333 L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 333 LTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL-RHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC-CEEECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred eeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcc-cEeECCCCccccchhhccCCCCCCeeECCCCc
Confidence 999998654433 222345689999999988776421 123344444 8899999988876532 26899999999999
Q ss_pred ccccCh-hhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcccc-ccCccccCCCCccEEEccCCcccccc
Q 040154 393 LIGGIA-PWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFG-TIPQTFLGVEWLRMIDLSDNLLQGRI 470 (600)
Q Consensus 393 ~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~ 470 (600)
+.+..+ ..+..+++|+.|++++|.+.+..|..+..++. |++|++++|++++ ..|..|..+++|++|++++|.+++..
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC-CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence 999887 68899999999999999999999999999985 9999999999987 47889999999999999999999999
Q ss_pred CcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCC-cceEEEccCCcCcccCChhhH
Q 040154 471 PRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFP-KLRIIDISSNRFIGKLPSKYF 549 (600)
Q Consensus 471 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~l~~N~~~~~~~~~~~ 549 (600)
|..|.++++|++|+|++|++++..|..|..+++|+.|++++|+++.+.+. +..++ +|+.|++++|++.|.|+..||
T Consensus 490 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~---~~~l~~~L~~l~l~~N~~~c~c~~~~~ 566 (606)
T 3vq2_A 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI---LQHFPKSLAFFNLTNNSVACICEHQKF 566 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC---GGGSCTTCCEEECCSCCCCCSSTTHHH
T ss_pred hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh---HhhhcccCcEEEccCCCcccCCccHHH
Confidence 99999999999999999999999999999999999999999999977433 35666 599999999999999999999
Q ss_pred hccccc
Q 040154 550 QCWNAM 555 (600)
Q Consensus 550 ~~~~~l 555 (600)
..|-.-
T Consensus 567 ~~~l~~ 572 (606)
T 3vq2_A 567 LQWVKE 572 (606)
T ss_dssp HTTTTT
T ss_pred HHHHHc
Confidence 988543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.2e-52 Score=446.50 Aligned_cols=527 Identities=19% Similarity=0.133 Sum_probs=431.7
Q ss_pred CcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccC
Q 040154 23 LIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK 102 (600)
Q Consensus 23 L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 102 (600)
-++++.++.+++ .+|..+. +++++|++++|.+++..|.+|+++++|++|++++|.+.+..|.+|+++++|++|++++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 457889998888 5565555 4799999999999988899999999999999999999988899999999999999999
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCC
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLP 182 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 182 (600)
|.+.+..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99998888999999999999999999997777889999999999999999998665566669999999999999998888
Q ss_pred ccccCCCCCc--EEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCcccc----ccchh
Q 040154 183 PSVGNLTQLQ--WLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSG----GMELD 256 (600)
Q Consensus 183 ~~l~~l~~L~--~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~ 256 (600)
..++.+++|+ +|++++|.+.+..+..+.. ..|+.|++++|. ..+..+..+.++....+....+.. .+...
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChh
Confidence 8899999999 8999999999877766654 689999999886 233444455444433332221110 11111
Q ss_pred HHhhcC--CCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhH-H
Q 040154 257 VFLISL--KNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWL-L 332 (600)
Q Consensus 257 ~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~ 332 (600)
.+. .+ .+|+.+++++|.+.. .....+ .+++|+.+++++|.+..+|..+..+++|+.|++++|.+.+..+..+ .
T Consensus 247 ~~~-~l~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 247 VFE-GLCEMSVESINLQKHYFFN--ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGG-GGGGSEEEEEECTTCCCSS--CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred Hhc-hhhcCceeEEEeecCccCc--cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 111 22 268888888885533 222223 6788888888888888888888888888888888888887655444 3
Q ss_pred hccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccC--C---CCCCCCcEEEcccCcccccChhhhhccCCC
Q 040154 333 EQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPL--P---IPPPRTRNYLISNNSLIGGIAPWICNLNFL 407 (600)
Q Consensus 333 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~--~---~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L 407 (600)
.++|+.|++++|.+....+...+.....+ +.+++++|.+.+.. + ...++++.+++++|.+.+..+..+..+++|
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENL-RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTC-CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcC-CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 46688888888887754444445555555 88999999887764 2 237899999999999999999999999999
Q ss_pred CeeeCCCCcccccCChh-hhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccc---cCcchhcCCCCcEE
Q 040154 408 EGLDLSRNNLSGLLPHC-LGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGR---IPRSLVNCSNLEFL 483 (600)
Q Consensus 408 ~~L~L~~n~i~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L 483 (600)
+.|++++|.+.+..+.. +..++. |++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+.++++|++|
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTT-CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CeEECCCCcCCCcccchhhhCccc-CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 99999999999776544 777775 99999999999998899999999999999999999863 33679999999999
Q ss_pred eCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccceeeccCcc
Q 040154 484 DLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTSGL 563 (600)
Q Consensus 484 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~~~~~ 563 (600)
++++|+++++.|..|..+++|+.|+|++|++++..+..+ ..++.| .|++++|++++ ++...+..++.++.+++.++
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~L-~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL--SHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG--TTCCSC-EEECCSSCCCC-CCGGGHHHHHTSSEEECTTC
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh--Cccccc-EEECcCCcccc-cCHhhcccCCCCCEEeCCCC
Confidence 999999999999999999999999999999999876555 778999 99999999995 55577899999999999999
Q ss_pred ee
Q 040154 564 VT 565 (600)
Q Consensus 564 ~~ 565 (600)
+.
T Consensus 558 ~~ 559 (606)
T 3t6q_A 558 PL 559 (606)
T ss_dssp CE
T ss_pred Cc
Confidence 64
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-51 Score=459.36 Aligned_cols=520 Identities=24% Similarity=0.246 Sum_probs=425.2
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCCEEEccccCCCCCcchhc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRL-PSSIGNLSSLEKLDLSLNVFSGDMPAVI 89 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 89 (600)
..+|. -.+++++|||++|.+++..+..|+++++|++|++++|...+.+ |.+|+++++|++|++++|.+.+..|..|
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 34565 3468999999999999888899999999999999999654444 7889999999999999999998889999
Q ss_pred cCCCCCCEEEccCccCCCCcch--hcCCCCCCCEEEccCCccccccC-cccCCCCCCCEEEccCCCCCCcchhhcCCC--
Q 040154 90 GNLSSLKALVLSKTNFSSDLPA--FIGNLPSLEILDLSGNKISGELP-DFFGNLPSLEELDLSGNQLSGDFSVSTGNL-- 164 (600)
Q Consensus 90 ~~l~~L~~L~L~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~-- 164 (600)
+++++|++|++++|.+.+..+. ++.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 9999999999999999875544 48899999999999999986654 578999999999999999988888887766
Q ss_pred CCCCEEEecCCCCcccCCccccCCCC------CcEEeccccccccCCCccccCC---CCCcEEEecCC---------cCC
Q 040154 165 TSLKRLSLESCSFLGKLPPSVGNLTQ------LQWLGLASNNFSGNLPSTIGNL---RSLETLDISSC---------NFS 226 (600)
Q Consensus 165 ~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n---------~l~ 226 (600)
++|+.|++++|.+.+..+..+..++. |++|++++|.+++..+..+... ..++.+.+..+ .+.
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 89999999999998887777766665 9999999998887766655432 56778877632 233
Q ss_pred CCCchhccCC--CCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCCCCcc
Q 040154 227 GPIPSSLRNL--TQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCNLTEF 303 (600)
Q Consensus 227 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~ 303 (600)
+.....|..+ ++|+.|++++|.+.+..+ .. +..+++|+.|++++|.+... ....+ .+++|+.|++++|.+..+
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RV-FETLKDLKVLNLAYNKINKI--ADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECS-CC-SSSCCCCCEEEEESCCCCEE--CTTTTTTCSSCCEEEEESCCCSCC
T ss_pred CCChhhhhccccCCccEEECCCCcccccCh-hh-hhcCCCCCEEECCCCcCCCC--ChHHhcCCCCCCEEECCCCCCCcc
Confidence 3334445444 689999999998875322 22 23789999999999966533 23333 678999999999999855
Q ss_pred -chhhhCCCCCcEEECcCCCCCCCCChhH-HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCC
Q 040154 304 -PNFLKNQKNVAVLDLSSNRIHGKIPKWL-LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPP 381 (600)
Q Consensus 304 -~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~ 381 (600)
+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.++.+.. .+.+ +.+++++|+++.. +....
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~~~L-~~L~l~~N~l~~l-~~~~~ 401 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------IPSI-PDIFLSGNKLVTL-PKINL 401 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS------CCSC-SEEEEESCCCCCC-CCCCT
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC------CCCc-chhccCCCCcccc-ccccc
Confidence 6688899999999999999987766655 35679999999999987654 2333 8899999999854 44477
Q ss_pred CCcEEEcccCcccccCh-hhhhccCCCCeeeCCCCcccccCCh-hhhhccccCceEECCCCccc-----cccCccccCCC
Q 040154 382 RTRNYLISNNSLIGGIA-PWICNLNFLEGLDLSRNNLSGLLPH-CLGNISNHLSILNLQHNKFF-----GTIPQTFLGVE 454 (600)
Q Consensus 382 ~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~-----~~~~~~~~~l~ 454 (600)
+++.+++++|.+.+... ..+.++++|+.|++++|++++..+. .+...+ +|++|++++|.+. +..+..|.+++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC-ccccccCCCCccccccccccchhhhcCcc
Confidence 89999999999987543 3566899999999999999865544 233445 5999999999997 44456788999
Q ss_pred CccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEE
Q 040154 455 WLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIID 534 (600)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 534 (600)
+|+.|+|++|.+++..+..|.++++|++|+|++|+++++.+..+. ++|+.|+|++|++++..+.. +++|+.++
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-----~~~L~~l~ 553 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-----FVSLSVLD 553 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-----CSSCCEEE
T ss_pred cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-----hCCcCEEE
Confidence 999999999999999999999999999999999999998888776 89999999999999886543 45899999
Q ss_pred ccCCcCcccCChhhHhccc
Q 040154 535 ISSNRFIGKLPSKYFQCWN 553 (600)
Q Consensus 535 l~~N~~~~~~~~~~~~~~~ 553 (600)
+++|++.|.|+..+|..|-
T Consensus 554 l~~Np~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 554 ITHNKFICECELSTFINWL 572 (844)
T ss_dssp EEEECCCCSSSCCSHHHHH
T ss_pred ecCCCcccccccHHHHHHH
Confidence 9999999999988887774
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-50 Score=434.71 Aligned_cols=523 Identities=20% Similarity=0.178 Sum_probs=439.7
Q ss_pred CcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccC
Q 040154 23 LIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK 102 (600)
Q Consensus 23 L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 102 (600)
-++++.++++++ .+|..+. +++++|++++|.+++..+.+|+++++|++|++++|.+.+..|..|+++++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 468999999998 4555444 8999999999999988888999999999999999999988888999999999999999
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCC-cchhhcCCCCCCCEEEecCCCCcccC
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG-DFSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
|.+.+..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 99999889999999999999999999997777889999999999999999986 45889999999999999999999888
Q ss_pred CccccCCCCCc----EEeccccccccCCCccccCCCCCcEEEecCCcCC-CCCchhccCCCCCCEEEcCCCcccccc---
Q 040154 182 PPSVGNLTQLQ----WLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS-GPIPSSLRNLTQLSCLDLSRNHFSGGM--- 253 (600)
Q Consensus 182 ~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~--- 253 (600)
+..++.+.+|+ ++++++|.+++..+..+... +|+.|++++|.+. +..+..+..++.++.+++..+.+....
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 88787776655 89999999987766666554 8999999999887 456778889999999888655443211
Q ss_pred --chhHHhhcC--CCCCEEEc-cCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCC
Q 040154 254 --ELDVFLISL--KNLEVLYL-SSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIP 328 (600)
Q Consensus 254 --~~~~~~~~~--~~L~~L~l-~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 328 (600)
....+ ..+ -.++.+++ ..+ ...+..+....+++|+.++++++.+..+| .+..+++|+.|++++|.+ +.+|
T Consensus 249 ~~~~~~~-~~l~~l~l~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 249 IFEPSIM-EGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CCCGGGG-TTGGGSEEEEEEECCCT--TCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ccChHHh-hhhhhccHhheeccccc--cccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc
Confidence 11111 111 14566666 334 22333333337899999999999999888 788899999999999999 5677
Q ss_pred hhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccC--CC---CCCCCcEEEcccCcccccChhhhhc
Q 040154 329 KWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPL--PI---PPPRTRNYLISNNSLIGGIAPWICN 403 (600)
Q Consensus 329 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~--~~---~~~~l~~l~l~~n~~~~~~~~~~~~ 403 (600)
.+ ..++++.|++++|...... .....+.+ +.+++++|.+++.. +. ..++++.+++++|.+.+ ++..+..
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L-~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~ 397 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISF---KKVALPSL-SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG 397 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEEC---CCCCCTTC-CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTT
T ss_pred cC-CCCccceeeccCCcCccch---hhccCCCC-CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccC
Confidence 66 6678999999999544432 22344555 99999999998763 22 27899999999999886 4477889
Q ss_pred cCCCCeeeCCCCcccccCC-hhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCcccc-ccCcchhcCCCCc
Q 040154 404 LNFLEGLDLSRNNLSGLLP-HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQG-RIPRSLVNCSNLE 481 (600)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~ 481 (600)
+++|+.|++++|.+.+..+ ..+..++. |++|++++|++.+..|..+..+++|++|++++|.+.+ ..|..|.++++|+
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCeeECCCCccCCccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 9999999999999998877 67778885 9999999999999999999999999999999999998 4788999999999
Q ss_pred EEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccc-cceeecc
Q 040154 482 FLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWN-AMQVVNT 560 (600)
Q Consensus 482 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~-~l~~~~~ 560 (600)
+|+|++|++++..|.+|..+++|+.|++++|++++..|..+ ..+++|+.|++++|+++ .+|.. +..++ .++.+++
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l 552 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY--NQLYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNL 552 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT--TTCTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEEC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc--cCCCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEc
Confidence 99999999999999999999999999999999999876655 77899999999999998 67765 77786 5999999
Q ss_pred Cccee
Q 040154 561 SGLVT 565 (600)
Q Consensus 561 ~~~~~ 565 (600)
.+++.
T Consensus 553 ~~N~~ 557 (606)
T 3vq2_A 553 TNNSV 557 (606)
T ss_dssp CSCCC
T ss_pred cCCCc
Confidence 98854
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-49 Score=420.36 Aligned_cols=481 Identities=24% Similarity=0.252 Sum_probs=389.9
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+. +++++|++++|.+++..+.+|+++++|++|++++|++++..+.+|+++++|++|++++|.+.+..+..|+
T Consensus 20 ~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 34666554 4899999999999988888999999999999999999988888899999999999999999888888999
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCcccc-ccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCC--
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG-ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL-- 167 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L-- 167 (600)
++++|++|++++|++....+..++++++|++|++++|.+.+ ..|..+.++++|++|++++|.+++..+..+..+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999999999988766679999999999999999986 368889999999999999999998877888877777
Q ss_pred --CEEEecCCCCcccCCccccCCCCCcEEecccccccc-------------------------------CCCccccCCC-
Q 040154 168 --KRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSG-------------------------------NLPSTIGNLR- 213 (600)
Q Consensus 168 --~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-------------------------------~~~~~l~~l~- 213 (600)
+.+++++|.+.+..+..+... .|+.|++++|.... .....+..++
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 899999999998887777665 79999998874221 1111222222
Q ss_pred -CCcEEEecCC-cCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCccc
Q 040154 214 -SLETLDISSC-NFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFG 291 (600)
Q Consensus 214 -~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 291 (600)
.++.++++++ .+.+..+..+..+++|+.|++++|.+.. ++. ....+ +|++|++++|.+.... ...+++|+
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~--~~~~~-~L~~L~l~~n~~~~l~----~~~l~~L~ 328 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD--FSYNF-GWQHLELVNCKFGQFP----TLKLKSLK 328 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB--CCSCC-CCSEEEEESCBCSSCC----BCBCSSCC
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh--hhccC-CccEEeeccCcccccC----cccccccC
Confidence 2455666666 5666777888999999999999998874 222 12255 9999999999765222 13678999
Q ss_pred EEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCC--ChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEccc
Q 040154 292 TVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKI--PKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSS 369 (600)
Q Consensus 292 ~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~ 369 (600)
.+++++|.+...... ..+++|+.|++++|.+++.. +..+..
T Consensus 329 ~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~------------------------------------ 371 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFG------------------------------------ 371 (570)
T ss_dssp EEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHT------------------------------------
T ss_pred EEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccc------------------------------------
Confidence 999999988743332 67899999999999876432 222211
Q ss_pred CcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCC-hhhhhccccCceEECCCCccccccCc
Q 040154 370 NFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLP-HCLGNISNHLSILNLQHNKFFGTIPQ 448 (600)
Q Consensus 370 n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~ 448 (600)
.++++.+++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..++. |++|++++|++.+..+.
T Consensus 372 ----------~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 372 ----------TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNG 439 (570)
T ss_dssp ----------CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT-CCEEECTTSCCEECCTT
T ss_pred ----------cCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC-CCEEeCcCCcccccchh
Confidence 13444444455544443333 6678999999999999987766 46677775 99999999999998999
Q ss_pred cccCCCCccEEEccCCccc-cccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCC
Q 040154 449 TFLGVEWLRMIDLSDNLLQ-GRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGF 527 (600)
Q Consensus 449 ~~~~l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 527 (600)
.|.++++|++|++++|.+. +.+|..+..+++|++|++++|+++++.|.+|..+++|+.|++++|++++..+..+ ..+
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l 517 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRL 517 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTC
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcc
Confidence 9999999999999999998 5788999999999999999999999999999999999999999999998865444 788
Q ss_pred CcceEEEccCCcCcccCChhhHh-ccc
Q 040154 528 PKLRIIDISSNRFIGKLPSKYFQ-CWN 553 (600)
Q Consensus 528 ~~L~~L~l~~N~~~~~~~~~~~~-~~~ 553 (600)
++|+.|++++|++.|.||..++. .|-
T Consensus 518 ~~L~~L~l~~N~~~~~~~~~~~~~~wl 544 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCPRIDYLSRWL 544 (570)
T ss_dssp TTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred cCCcEEEecCCcccCCCcchHHHHHHH
Confidence 99999999999999999976654 663
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-47 Score=423.58 Aligned_cols=518 Identities=23% Similarity=0.217 Sum_probs=424.2
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCc-chhccCCCCCCEEEccC
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDM-PAVIGNLSSLKALVLSK 102 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~ 102 (600)
+..|.++++++.+ |. -.+++++|+|++|.+++..+.+|.++++|++|++++|...+.+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 4688889999854 44 4589999999999999888999999999999999999654444 78899999999999999
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCcc--cCCCCCCCEEEccCCCCCCcch-hhcCCCCCCCEEEecCCCCcc
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDF--FGNLPSLEELDLSGNQLSGDFS-VSTGNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~~~~ 179 (600)
|.+....|.+|+++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999998765554 8999999999999999987654 578999999999999999998
Q ss_pred cCCccccCC--CCCcEEeccccccccCCCccccCCCC------CcEEEecCCcCCCCCchhccCC---CCCCEEEcCCCc
Q 040154 180 KLPPSVGNL--TQLQWLGLASNNFSGNLPSTIGNLRS------LETLDISSCNFSGPIPSSLRNL---TQLSCLDLSRNH 248 (600)
Q Consensus 180 ~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~ 248 (600)
..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+... ..++.+.++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888877 89999999999999888777777665 9999999999887766655433 678888887443
Q ss_pred cccc--------cchhHHh-hcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCCCCcc-chhhhCCCCCcEEE
Q 040154 249 FSGG--------MELDVFL-ISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCNLTEF-PNFLKNQKNVAVLD 317 (600)
Q Consensus 249 ~~~~--------~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~ 317 (600)
.... .....+. ...++|+.|++++|.+... ....+ .+++|+.|++++|.+..+ +..+..+++|+.|+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL--NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE--CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCccccc--ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 2211 1111111 1247899999999966533 33333 789999999999999955 56789999999999
Q ss_pred CcCCCCCCCCChhH-HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCccccc
Q 040154 318 LSSNRIHGKIPKWL-LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGG 396 (600)
Q Consensus 318 l~~n~l~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~ 396 (600)
+++|.+++..+..+ ..++|+.|++++|++..+++. .+...+.+ +.+++++|.+++... .++++.+++++|++...
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L-~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKL-QTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS-CSCSCCCC-CEEEEETCCSCCCSS--CCSCSEEEEESCCCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh-hhcCCCCC-CEEECCCCCCCcccC--CCCcchhccCCCCcccc
Confidence 99999988777665 456799999999999887654 23445555 999999999987544 78899999999999843
Q ss_pred ChhhhhccCCCCeeeCCCCcccccCCh-hhhhccccCceEECCCCccccccCc-cccCCCCccEEEccCCccc-----cc
Q 040154 397 IAPWICNLNFLEGLDLSRNNLSGLLPH-CLGNISNHLSILNLQHNKFFGTIPQ-TFLGVEWLRMIDLSDNLLQ-----GR 469 (600)
Q Consensus 397 ~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~ 469 (600)
|. ....++.|++++|.+.+.... .+..++. |++|++++|++++..+. .+..+++|+.|++++|.++ +.
T Consensus 397 -~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 397 -PK---INLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp -CC---CCTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred -cc---cccccceeecccCccccCchhhhhhcCCc-cceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence 32 256799999999999965433 2346774 99999999999876543 4667899999999999997 44
Q ss_pred cCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhH
Q 040154 470 IPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYF 549 (600)
Q Consensus 470 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~ 549 (600)
.+..|.++++|++|+|++|+++++.|..|.++++|+.|+|++|+++++.+..+ . ++|+.|++++|++++..|. .|
T Consensus 472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~--~~L~~L~Ls~N~l~~~~~~-~~ 546 (844)
T 3j0a_A 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--P--ANLEILDISRNQLLAPNPD-VF 546 (844)
T ss_dssp CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC--C--SCCCEEEEEEECCCCCCSC-CC
T ss_pred chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh--h--ccccEEECCCCcCCCCChh-Hh
Confidence 45678999999999999999999999999999999999999999998865544 2 7899999999999987773 33
Q ss_pred hccccceeeccCcce
Q 040154 550 QCWNAMQVVNTSGLV 564 (600)
Q Consensus 550 ~~~~~l~~~~~~~~~ 564 (600)
..++.+++.+++
T Consensus 547 ---~~L~~l~l~~Np 558 (844)
T 3j0a_A 547 ---VSLSVLDITHNK 558 (844)
T ss_dssp ---SSCCEEEEEEEC
T ss_pred ---CCcCEEEecCCC
Confidence 467777776664
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.6e-47 Score=402.42 Aligned_cols=493 Identities=20% Similarity=0.219 Sum_probs=286.2
Q ss_pred EECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccC
Q 040154 26 LDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNF 105 (600)
Q Consensus 26 L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 105 (600)
.|.+++.++. +|..+. ++|++|++++|++++..|.+|+++++|++|++++|.+.+..+..|+++++|++|++++|.+
T Consensus 10 c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 4444454542 222222 4555555555555544444555555555555555555544444555555555555555555
Q ss_pred CCCcchhcCCCCCCCEEEccCCccccc-cCcccCCCCCCCEEEccCCCC-CCcchhhcCCCCCCCEEEecCCCCcccCCc
Q 040154 106 SSDLPAFIGNLPSLEILDLSGNKISGE-LPDFFGNLPSLEELDLSGNQL-SGDFSVSTGNLTSLKRLSLESCSFLGKLPP 183 (600)
Q Consensus 106 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 183 (600)
.+..+..++++++|++|++++|.+++. .+..+.++++|++|++++|.+ ....+..+.++++|++|++++|.+.+..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 554444455555555555555555431 233455555555555555542 222223455555555555555555555555
Q ss_pred cccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCC---chhccCCCCCCEEEcCCCccccccchh--HH
Q 040154 184 SVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPI---PSSLRNLTQLSCLDLSRNHFSGGMELD--VF 258 (600)
Q Consensus 184 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~ 258 (600)
.+..+++|++|++++|.+.......+..+++|++|++++|.+.+.. ......+++|+.|++++|.+.+..... ..
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 5555555555555555543222222234555555555555554421 112233455556666555554321111 11
Q ss_pred hhcCCCCCEEEccCCccceeeccC-----CCCCCCcccEEEecCCCCCcc------chhhhCCCCCcEEECcCCCCCCCC
Q 040154 259 LISLKNLEVLYLSSNRLSVHTKAT-----SSTTSQKFGTVGLRSCNLTEF------PNFLKNQKNVAVLDLSSNRIHGKI 327 (600)
Q Consensus 259 ~~~~~~L~~L~l~~n~~~~~~~~~-----~~~~~~~L~~l~l~~~~l~~~------~~~l~~~~~L~~L~l~~n~l~~~~ 327 (600)
...+++|+.+++++|.+....... ......+++.+.+.++.+... +..+...++|+.|++++|.+. .+
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence 124455666666665432221111 011345556666655544421 222333456666666666655 33
Q ss_pred ChhH--HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccCh--hhhhc
Q 040154 328 PKWL--LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIA--PWICN 403 (600)
Q Consensus 328 ~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~--~~~~~ 403 (600)
|..+ ..++|+.|++++|++....+... ......++++.|++++|.+++..+ ..+..
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNS--------------------ACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHH--------------------TCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred CHHHHhcCccccEEEccCCccccccccch--------------------hhhhccccCcEEEccCCcccccccchhhhhc
Confidence 4333 23445556665555543211000 000124677888888888776543 46888
Q ss_pred cCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEE
Q 040154 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFL 483 (600)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 483 (600)
+++|++|++++|+++ .+|..+..++. |++|++++|++++. +..+ .++|++|++++|++++.+ .++++|++|
T Consensus 386 l~~L~~L~Ls~N~l~-~lp~~~~~~~~-L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L 456 (549)
T 2z81_A 386 LKNLTSLDISRNTFH-PMPDSCQWPEK-MRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQEL 456 (549)
T ss_dssp CTTCCEEECTTCCCC-CCCSCCCCCTT-CCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred CCCCCEEECCCCCCc-cCChhhccccc-ccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEE
Confidence 999999999999999 56777777775 99999999999754 3333 368999999999998653 578999999
Q ss_pred eCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCC-hhhHhccccc
Q 040154 484 DLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP-SKYFQCWNAM 555 (600)
Q Consensus 484 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~l 555 (600)
+|++|+++.+ |. ...+++|++|+|++|++++..+..+ ..+++|+.|++++|++.|.|| ..++..|-..
T Consensus 457 ~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 457 YISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp ECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGG--GGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred ECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHH--hcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 9999999854 44 4579999999999999998865444 678999999999999999999 5677777543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-46 Score=399.60 Aligned_cols=504 Identities=20% Similarity=0.191 Sum_probs=371.8
Q ss_pred CcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccC
Q 040154 23 LIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK 102 (600)
Q Consensus 23 L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 102 (600)
.++++.++.+++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|+++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456788887777 3444343 5799999999999877778899999999999999988877778889999999999999
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCc-chhhcCCCCCCCEEEecCCCCcccC
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD-FSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
|.+....+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .|..+.++++|++|++++|.+.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 998887778889999999999999988866555688889999999999888763 5777888888888888888888777
Q ss_pred CccccCCCCC----cEEeccccccccCCCccccCCCCCcEEEecCCcCCC-CCchhccCCCCCCEEEcCCCccccc----
Q 040154 182 PPSVGNLTQL----QWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG-PIPSSLRNLTQLSCLDLSRNHFSGG---- 252 (600)
Q Consensus 182 ~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~---- 252 (600)
+..++.++.| +++++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+....+...
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 7777777777 788888888887766666655 68888888774332 3345556666666655433222110
Q ss_pred -cchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCC-CCC-ccchhhhCCCCCcEEECcCCCCCCCCCh
Q 040154 253 -MELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSC-NLT-EFPNFLKNQKNVAVLDLSSNRIHGKIPK 329 (600)
Q Consensus 253 -~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~-~l~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 329 (600)
+....+ ..++. ..++.++++.+ .+. ..+..+..+++|+.|++++|.+.+ +|.
T Consensus 245 ~~~~~~~-~~l~~-----------------------l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~ 299 (570)
T 2z63_A 245 KFDKSAL-EGLCN-----------------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD 299 (570)
T ss_dssp ECCTTTT-GGGGG-----------------------SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB
T ss_pred hcchhhh-ccccc-----------------------cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh
Confidence 000000 01111 12233333333 111 233344444455555555554442 222
Q ss_pred hHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCC-CCCCCcEEEcccCcccccC--hhhhhccCC
Q 040154 330 WLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPI-PPPRTRNYLISNNSLIGGI--APWICNLNF 406 (600)
Q Consensus 330 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~-~~~~l~~l~l~~n~~~~~~--~~~~~~~~~ 406 (600)
++...++++|++++|.+..++.. .++.+ +.+++++|...+..+. ..++++.+++++|.+.+.. +..+..+++
T Consensus 300 ~~~~~~L~~L~l~~n~~~~l~~~----~l~~L-~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 374 (570)
T 2z63_A 300 FSYNFGWQHLELVNCKFGQFPTL----KLKSL-KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374 (570)
T ss_dssp CCSCCCCSEEEEESCBCSSCCBC----BCSSC-CEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSC
T ss_pred hhccCCccEEeeccCcccccCcc----ccccc-CEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCc
Confidence 22111455555555555433321 22222 5666666665554443 3788999999999988765 678899999
Q ss_pred CCeeeCCCCcccccCChhhhhccccCceEECCCCccccccC-ccccCCCCccEEEccCCccccccCcchhcCCCCcEEeC
Q 040154 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIP-QTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDL 485 (600)
Q Consensus 407 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L 485 (600)
|+.|++++|.+.+..+. +..++. |++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..|.++++|++|++
T Consensus 375 L~~L~l~~n~l~~~~~~-~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 375 LKYLDLSFNGVITMSSN-FLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCEEECCSCSEEEEEEE-EETCTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCcccccccc-ccccCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 99999999999966554 777885 9999999999987765 57899999999999999999999999999999999999
Q ss_pred CCCccc-ccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccceeeccCcce
Q 040154 486 GNNQIS-DTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTSGLV 564 (600)
Q Consensus 486 s~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~~~~~~ 564 (600)
++|.++ +..|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++++. |...|..++.|+.+++++++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhh--hcccCCCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCc
Confidence 999998 5788999999999999999999999976655 7789999999999999864 55778999999999999985
Q ss_pred e
Q 040154 565 T 565 (600)
Q Consensus 565 ~ 565 (600)
.
T Consensus 530 ~ 530 (570)
T 2z63_A 530 W 530 (570)
T ss_dssp B
T ss_pred c
Confidence 4
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.4e-46 Score=404.29 Aligned_cols=529 Identities=23% Similarity=0.204 Sum_probs=345.1
Q ss_pred ecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccC
Q 040154 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGN 91 (600)
Q Consensus 12 ~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 91 (600)
++|..+. +++++|||++|.|+++.+.+|.++++|++|+|++|+|+++.+.+|+++++|++|+|++|.+++..+..|++
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3454443 36777777777777666677777777777777777777666667777777777777777777666666777
Q ss_pred CCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccc-cCcccCCCCCCCEEEccCCCCCCcchhhcCCCCC----
Q 040154 92 LSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGE-LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS---- 166 (600)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~---- 166 (600)
+++|++|++++|++++..+..|+++++|++|++++|.+.+. .|..+..++.|++|++++|.+++..+..+..+.+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 77777777777777766666677777777777777777643 4556677777777777777777666555543332
Q ss_pred CCEEEecCCCCcccCCccccCCCCCcEEecccccccc-CCCccccCCCCCcEEEecCCc------CCCCCchhccCCCCC
Q 040154 167 LKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSG-NLPSTIGNLRSLETLDISSCN------FSGPIPSSLRNLTQL 239 (600)
Q Consensus 167 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L 239 (600)
...++++.|.+....+..+. ...++.+++.+|.... ..+..+..+..++...+..+. +.......+..+..+
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 34666777766655443332 2344556665554321 112233444444444432211 111122223333333
Q ss_pred CEEEcCCCcccccc-chhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEEC
Q 040154 240 SCLDLSRNHFSGGM-ELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDL 318 (600)
Q Consensus 240 ~~L~l~~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l 318 (600)
....+..+...... ..........+++.+.+.++.+..... ......++.+++.+|.+..++. ..++.|+.+++
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~l 356 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF 356 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCC--CBCTTCCEEEE
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhhhhhcccccccCcCc--ccchhhhhccc
Confidence 33333222211000 000111234455555555553322111 1133455666666665554332 23445566666
Q ss_pred cCCCCCCCCChhHHhccCCceecccccccCCCCCCCc-cCCCCCCcEEEcccCcccccCCC--CCCCCcEEEcccCcccc
Q 040154 319 SSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVV-CPWGNRPFSLDFSSNFLQGPLPI--PPPRTRNYLISNNSLIG 395 (600)
Q Consensus 319 ~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~~~~~~~l~l~~n~~~~~~~~--~~~~l~~l~l~~n~~~~ 395 (600)
..+....... ....++++.++++.|.+......... .....+ +.+++..+........ ..++++.+++..++...
T Consensus 357 ~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L-~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 357 TSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL-KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp ESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC-CEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred ccccCCCCcc-cccccccccchhhccccccccccccchhhhhhh-hhhhccccccccccccccccccccchhhhhccccc
Confidence 6555443221 12233466666666665433222111 112222 6666666665544332 26788888888887766
Q ss_pred cCh-hhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcc-ccccCccccCCCCccEEEccCCccccccCcc
Q 040154 396 GIA-PWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF-FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRS 473 (600)
Q Consensus 396 ~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 473 (600)
..+ ..+..++.++.+++++|.+.+..+..+..++. +++|++++|.+ .+..|+.|..+++|++|+|++|++++..|..
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~-L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccccccccccccccccccccccccccccccccchh-hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 554 46788999999999999999888888888885 99999999975 4567889999999999999999999999999
Q ss_pred hhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCC-CcceEEEccCCcCcccCChhhHhcc
Q 040154 474 LVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGF-PKLRIIDISSNRFIGKLPSKYFQCW 552 (600)
Q Consensus 474 l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~l~~N~~~~~~~~~~~~~~ 552 (600)
|.++++|++|+|++|+|+++.|..|+++++|++|+|++|+++++.+..+ ..+ ++|+.|++++||+.|.|...||..|
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999976655 555 6899999999999999999999988
Q ss_pred c
Q 040154 553 N 553 (600)
Q Consensus 553 ~ 553 (600)
-
T Consensus 592 l 592 (635)
T 4g8a_A 592 I 592 (635)
T ss_dssp H
T ss_pred H
Confidence 5
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.4e-46 Score=392.60 Aligned_cols=463 Identities=21% Similarity=0.203 Sum_probs=340.3
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCc
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKT 103 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 103 (600)
++||++++.++. +|..+. ++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578888888884 555454 78888888888888777778888888888888888888777888888888888888888
Q ss_pred cCCCCcchhcCCCCCCCEEEccCCcccc-ccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCC--CEEEecCCCC--c
Q 040154 104 NFSSDLPAFIGNLPSLEILDLSGNKISG-ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL--KRLSLESCSF--L 178 (600)
Q Consensus 104 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L--~~L~l~~n~~--~ 178 (600)
++.. +|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 8874 4443 78888888888888876 356778888888888888888765 345566667 8888888887 6
Q ss_pred ccCCccccCCC-CCcEEeccccccccCCC-ccccCCCCCcEEEecCCc-------CCCCCchhccCCCCCCEEEcCCCcc
Q 040154 179 GKLPPSVGNLT-QLQWLGLASNNFSGNLP-STIGNLRSLETLDISSCN-------FSGPIPSSLRNLTQLSCLDLSRNHF 249 (600)
Q Consensus 179 ~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~ 249 (600)
+..|..+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 66666665554 23355677777655433 455677888888888775 443333 567778888888877776
Q ss_pred ccccchhHH-hhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhh-----hCCCCCcEEECcCCCC
Q 040154 250 SGGMELDVF-LISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFL-----KNQKNVAVLDLSSNRI 323 (600)
Q Consensus 250 ~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l-----~~~~~L~~L~l~~n~l 323 (600)
.+....... ....++|++|++++|.+. + .+|..+ ..+++|+.+++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~----------------------~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQ--G----------------------QLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEE--S----------------------CCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred CHHHHHHHHHHhhhCcccEEEeeccccc--C----------------------ccccchhhcccccCceeEeccccccce
Confidence 532111111 012346666666666332 1 333333 5566666666666666
Q ss_pred CCCCC-hhH----HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccCh
Q 040154 324 HGKIP-KWL----LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIA 398 (600)
Q Consensus 324 ~~~~~-~~~----~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 398 (600)
.+| ..+ ...+++.|++++|.+..... +...++++.|++++|.+.+..+
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------------~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-------------------------PSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTTT
T ss_pred --ecchhhhhcccccCceeEEEcCCCccccccc-------------------------hhhCCcccEEEeECCccChhhh
Confidence 333 222 11346666666666544321 0124678888888888888888
Q ss_pred hhhhccCCCCeeeCCCCcccc--cCChhhhhccccCceEECCCCccccccC-ccccCCCCccEEEccCCccccccCcchh
Q 040154 399 PWICNLNFLEGLDLSRNNLSG--LLPHCLGNISNHLSILNLQHNKFFGTIP-QTFLGVEWLRMIDLSDNLLQGRIPRSLV 475 (600)
Q Consensus 399 ~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 475 (600)
..+..+++|+.|++++|++++ .+|..+..++. |++|++++|++++.+| ..+..+++|++|++++|.+++..|..+.
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~-L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKS-LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT-CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCC-CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc
Confidence 888999999999999999996 45677888885 9999999999998444 4588999999999999999887776654
Q ss_pred cCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhH-hccc
Q 040154 476 NCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYF-QCWN 553 (600)
Q Consensus 476 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~-~~~~ 553 (600)
++|++|++++|+++ .+|..+..+++|++|++++|+++++.+. .+..+++|+.|++++|+++|.|+..|| ..|-
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH--HhccCCcccEEECcCCCCcccCCchHHHHHHH
Confidence 79999999999999 5666666999999999999999976433 347789999999999999999998888 7774
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-45 Score=394.42 Aligned_cols=473 Identities=20% Similarity=0.214 Sum_probs=379.2
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+. ++|++|++++|.+++..+.+|+++++|++|++++|++++..|.+|+++++|++|++++|.+.+..+..|+
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 35676654 7999999999999988889999999999999999999988888999999999999999999988888899
Q ss_pred CCCCCCEEEccCccCCC-CcchhcCCCCCCCEEEccCCcccccc-CcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCC
Q 040154 91 NLSSLKALVLSKTNFSS-DLPAFIGNLPSLEILDLSGNKISGEL-PDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK 168 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 168 (600)
++++|++|++++|.+.. ..+..++++++|++|++++|...+.+ +..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 99999999999999986 35678999999999999999844344 46799999999999999999998899999999999
Q ss_pred EEEecCCCCcccCCccccCCCCCcEEeccccccccCC---CccccCCCCCcEEEecCCcCCCCCc----hhccCCCCCCE
Q 040154 169 RLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNL---PSTIGNLRSLETLDISSCNFSGPIP----SSLRNLTQLSC 241 (600)
Q Consensus 169 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 241 (600)
+|++++|.+.......+..+++|++|++++|++++.. ......+++|+.|++++|.+.+..+ ..+..+++|+.
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 9999999876543334467899999999999998642 1233457899999999998876443 33467889999
Q ss_pred EEcCCCccccccchh----HHhhcCCCCCEEEccCCccceeeccCCC----CCCCcccEEEecCCCCCccchhh-hCCCC
Q 040154 242 LDLSRNHFSGGMELD----VFLISLKNLEVLYLSSNRLSVHTKATSS----TTSQKFGTVGLRSCNLTEFPNFL-KNQKN 312 (600)
Q Consensus 242 L~l~~n~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~l~l~~~~l~~~~~~l-~~~~~ 312 (600)
+++++|.+.+..... .....+++++.+++.++.+......... ....+++.+++++|.+..+|..+ ..+++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 999999876532111 1123678899999998865432211111 13468999999999999999766 57999
Q ss_pred CcEEECcCCCCCCCCChh---H-HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEc
Q 040154 313 VAVLDLSSNRIHGKIPKW---L-LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLI 388 (600)
Q Consensus 313 L~~L~l~~n~l~~~~~~~---~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l 388 (600)
|+.|++++|.+++..+.. + ..++|+.|++++|+++.++... ......++++.|++
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~l~~L~~L~L 394 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG---------------------EILLTLKNLTSLDI 394 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH---------------------HHGGGCTTCCEEEC
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch---------------------hhhhcCCCCCEEEC
Confidence 999999999998654332 1 2355888888888776543200 00112467778888
Q ss_pred ccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCcccc
Q 040154 389 SNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQG 468 (600)
Q Consensus 389 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 468 (600)
++|+++ .+|..+..+++|++|++++|.+++ +|..+. .+|++|++++|++++.. ..+++|++|+|++|+++
T Consensus 395 s~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~---~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp TTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-
T ss_pred CCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc---CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-
Confidence 888777 466677788999999999999984 444332 35999999999998653 57899999999999998
Q ss_pred ccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 469 RIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 469 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
.+|. ...+++|++|+|++|++++..|.+|+.+++|+.|++++|++...
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 5564 56799999999999999999999999999999999999998654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.6e-45 Score=392.87 Aligned_cols=433 Identities=21% Similarity=0.309 Sum_probs=227.6
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCC------C------CCccccCCCCCCCEEEccccCCCCCcchh
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELS------G------RLPSSIGNLSSLEKLDLSLNVFSGDMPAV 88 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~------~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 88 (600)
.+++.|+|+++.+++.+|.+++++++|++|+|++|.+. + .+|... +..|+ ++++.+.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47888888888888888888888888888888888652 1 111111 23344 555555554444433
Q ss_pred ccC-------------------CCCCCEEEcc--CccCCCCcchhcCCCCCCCEEEccCCccccc---------------
Q 040154 89 IGN-------------------LSSLKALVLS--KTNFSSDLPAFIGNLPSLEILDLSGNKISGE--------------- 132 (600)
Q Consensus 89 ~~~-------------------l~~L~~L~L~--~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------- 132 (600)
+.. ...++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 331 0111111111 334444 555555666666666666665543
Q ss_pred --cCcccC--CCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCC-Ccc-cCCccccCC------CCCcEEeccccc
Q 040154 133 --LPDFFG--NLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCS-FLG-KLPPSVGNL------TQLQWLGLASNN 200 (600)
Q Consensus 133 --~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~ 200 (600)
+|+.+. ++++|++|++++|.+.+..|..+.++++|++|++++|. +++ .+|..+..+ ++|++|++++|+
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 555555 55666666666665555555555555666666666655 554 444444443 555666666655
Q ss_pred cccCCCc--cccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCC-CCEEEccCCccce
Q 040154 201 FSGNLPS--TIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKN-LEVLYLSSNRLSV 277 (600)
Q Consensus 201 l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~ 277 (600)
++ .+|. .+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+. .++.. ...+++ |++|++++|.
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~--l~~l~~~L~~L~Ls~N~--- 388 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPAN--FCGFTEQVENLSFAHNK--- 388 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTT--SEEECTTCCEEECCSSC---
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHh--hhhhcccCcEEEccCCc---
Confidence 55 4444 55555555566665555554444 5555555555555555554 12211 123444 5555555554
Q ss_pred eeccCCCCCCCcccEEEecCCCCCccchhhhCCC--CCcEEECcCCCCCCCCChhHH--------hccCCceeccccccc
Q 040154 278 HTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQK--NVAVLDLSSNRIHGKIPKWLL--------EQNFSSLNLSHNLLT 347 (600)
Q Consensus 278 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~--------~~~L~~L~ls~n~l~ 347 (600)
+..+|..+...+ +|+.|++++|.+.+..|..+. ..+++.|++++|+++
T Consensus 389 ----------------------l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 389 ----------------------LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp ----------------------CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred ----------------------CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 333333333222 444444444444443333221 112334444443333
Q ss_pred CCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhh
Q 040154 348 GLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGN 427 (600)
Q Consensus 348 ~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 427 (600)
.++ +..+..+++|+.|++++|.++ .+|.....
T Consensus 447 ~lp-----------------------------------------------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 478 (636)
T 4eco_A 447 KFP-----------------------------------------------KELFSTGSPLSSINLMGNMLT-EIPKNSLK 478 (636)
T ss_dssp SCC-----------------------------------------------THHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred cCC-----------------------------------------------HHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence 221 112333455555555555555 33322221
Q ss_pred ccc-------cCceEECCCCccccccCcccc--CCCCccEEEccCCccccccCcchhcCCCCcEEeC------CCCcccc
Q 040154 428 ISN-------HLSILNLQHNKFFGTIPQTFL--GVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDL------GNNQISD 492 (600)
Q Consensus 428 ~~~-------~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L------s~n~l~~ 492 (600)
... +|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|++|+| ++|++.+
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 110 2666666666665 3444443 56666666666666664 5555666666666666 4456666
Q ss_pred cCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcc
Q 040154 493 TFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIG 542 (600)
Q Consensus 493 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~ 542 (600)
.+|..+..+++|++|+|++|++..+ |... .++|+.|++++|++.+
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~----~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDIRKV-NEKI----TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCCCBC-CSCC----CTTCCEEECCSCTTCE
T ss_pred cChHHHhcCCCCCEEECCCCcCCcc-CHhH----hCcCCEEECcCCCCcc
Confidence 6666777777777777777777433 3322 2567777777776664
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4e-44 Score=391.96 Aligned_cols=442 Identities=21% Similarity=0.284 Sum_probs=244.3
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEc-cCCCCCCCCcccc----------------------------------
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDL-STNELSGRLPSSI---------------------------------- 65 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l-~~~~i~~~~~~~l---------------------------------- 65 (600)
.+++.|+|+++.+.+.+|.+++++++|++|+| ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57889999999999888899999999999999 7776554322110
Q ss_pred -----------------CCCCCCCEEEccc--cCCCCCcchhccCCCCCCEEEccCccCCC-----------------Cc
Q 040154 66 -----------------GNLSSLEKLDLSL--NVFSGDMPAVIGNLSSLKALVLSKTNFSS-----------------DL 109 (600)
Q Consensus 66 -----------------~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~ 109 (600)
.....++.+.+.. |.+++ +|..++++++|++|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111122222221 33333 45555555555555555555554 14
Q ss_pred chhcC--CCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCC-CCC-cchhhcC-------CCCCCCEEEecCCCCc
Q 040154 110 PAFIG--NLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQ-LSG-DFSVSTG-------NLTSLKRLSLESCSFL 178 (600)
Q Consensus 110 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-i~~-~~~~~~~-------~~~~L~~L~l~~n~~~ 178 (600)
|..++ ++++|+.|++++|.+.+.+|..+.++++|++|++++|. +++ ..|..+. .+++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 44444 55555555555555555555555555555555555554 444 3333222 2235555555555554
Q ss_pred ccCCc--cccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCC-CCEEEcCCCccccccch
Q 040154 179 GKLPP--SVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQ-LSCLDLSRNHFSGGMEL 255 (600)
Q Consensus 179 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~ 255 (600)
.+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .++.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 3344 4555555555555555554 333 4455555555555555554 34444444554 555555555544 1221
Q ss_pred hHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCc-cch---hhh--CCCCCcEEECcCCCCCCCCCh
Q 040154 256 DVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTE-FPN---FLK--NQKNVAVLDLSSNRIHGKIPK 329 (600)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~---~l~--~~~~L~~L~l~~n~l~~~~~~ 329 (600)
... .. ..++|+.|++++|.+.. +|. .+. .+++|+.|++++|.++ .+|.
T Consensus 637 ~~~--~~-----------------------~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~ 690 (876)
T 4ecn_A 637 IFN--AK-----------------------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPT 690 (876)
T ss_dssp CCC--TT-----------------------CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCH
T ss_pred hhh--cc-----------------------ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCH
Confidence 100 11 12234455555554431 111 111 2235666666666655 2333
Q ss_pred hH--HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCC
Q 040154 330 WL--LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFL 407 (600)
Q Consensus 330 ~~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L 407 (600)
.+ ..++|+.|++++|++..++...... ....+.++++|
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~----------------------------------------~~~~l~nl~~L 730 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMTSIPENSLKP----------------------------------------KDGNYKNTYLL 730 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCSCCCTTSSSC----------------------------------------TTSCCTTGGGC
T ss_pred HHHccCCCCCEEECCCCcCCccChHHhcc----------------------------------------ccccccccCCc
Confidence 32 2244666666666665433221000 00012345677
Q ss_pred CeeeCCCCcccccCChhhh--hccccCceEECCCCccccccCccccCCCCccEEEccC------CccccccCcchhcCCC
Q 040154 408 EGLDLSRNNLSGLLPHCLG--NISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSD------NLLQGRIPRSLVNCSN 479 (600)
Q Consensus 408 ~~L~L~~n~i~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~l~~~~~ 479 (600)
+.|+|++|+++ .+|..+. .++. |+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|..|.++++
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~-L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPY-LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTT-CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred cEEECCCCCCc-cchHHhhhccCCC-cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 88888888777 5666665 6664 8888888888876 566777788888888765 6777777778888888
Q ss_pred CcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcc
Q 040154 480 LEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIG 542 (600)
Q Consensus 480 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~ 542 (600)
|++|+|++|++ +.+|..+. ++|+.|+|++|++..+.+..+ +....+..+.+.+|+..+
T Consensus 808 L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~--~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV--CPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG--HHHHHTTCCEEECCTTSE
T ss_pred CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc--cccccchheeecCCCccc
Confidence 88888888888 45555544 578888888888777654332 333344556666665543
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-44 Score=388.70 Aligned_cols=451 Identities=21% Similarity=0.235 Sum_probs=298.8
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCC------C------CcchhccCCCCCCEEEccCccCCCCcchh
Q 040154 45 GSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFS------G------DMPAVIGNLSSLKALVLSKTNFSSDLPAF 112 (600)
Q Consensus 45 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~------~------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 112 (600)
.+++.|+|+++.+.|.+|.+++++++|++|++++|.+. + .+|... +..|+ ++++.+.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 57889999999999888999999999999999988651 1 122222 33455 666666665555444
Q ss_pred cCC-CCCCCEEEccCCccccccCcccCCCCCCCEEEc--cCCCCCCcchhhcCCCCCCCEEEecCCCCccc---------
Q 040154 113 IGN-LPSLEILDLSGNKISGELPDFFGNLPSLEELDL--SGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK--------- 180 (600)
Q Consensus 113 ~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l--~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~--------- 180 (600)
+.. +..+..+++....+. ......++.+.+ ..|.+++ +|..++++++|++|++++|.+.+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 331 111111111111000 000011111111 1234444 445555555555555555555553
Q ss_pred --------CCcccc--CCCCCcEEeccccccccCCCccccCCCCCcEEEecCCc-CCC-CCchhccCC------CCCCEE
Q 040154 181 --------LPPSVG--NLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCN-FSG-PIPSSLRNL------TQLSCL 242 (600)
Q Consensus 181 --------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L 242 (600)
+|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|+ +++ ..|..+..+ ++|+.|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 555555 66666666666666666666666666666666666665 655 455555544 666777
Q ss_pred EcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCC-CcEEECcCC
Q 040154 243 DLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKN-VAVLDLSSN 321 (600)
Q Consensus 243 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~-L~~L~l~~n 321 (600)
++++|.+. .++.......+++|++|++++|.+. +..+....+++|+.|++++|.+..+|..+..+++ |+.|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~--g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE--EECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc--cchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence 77766665 3332112236666777777776443 2333222567788888888887888888999999 999999999
Q ss_pred CCCCCCChhHHhc---cCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccCh
Q 040154 322 RIHGKIPKWLLEQ---NFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIA 398 (600)
Q Consensus 322 ~l~~~~~~~~~~~---~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 398 (600)
.++ .+|..+... +|+.|++++|.+.. ..|
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-----------------------------------------------~~p 419 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGS-----------------------------------------------VDG 419 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTT-----------------------------------------------TTT
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCC-----------------------------------------------cch
Confidence 998 555543211 34444444444433 333
Q ss_pred hhhh-------ccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCC-------CccEEEccCC
Q 040154 399 PWIC-------NLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVE-------WLRMIDLSDN 464 (600)
Q Consensus 399 ~~~~-------~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-------~L~~L~L~~n 464 (600)
..+. .+++|+.|++++|.+++..+..+..++. |++|++++|+++.+.+..+.... +|+.|+|++|
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~-L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP-LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC-CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC-CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 3333 5678999999999999544444555775 99999999999955555555443 9999999999
Q ss_pred ccccccCcchh--cCCCCcEEeCCCCcccccCCcccCCCCCCCEEEc------cCccceeecCCCCCCCCCCcceEEEcc
Q 040154 465 LLQGRIPRSLV--NCSNLEFLDLGNNQISDTFPSWLGALPNLNILIL------QSNKFHGIIREPGTDCGFPKLRIIDIS 536 (600)
Q Consensus 465 ~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~~~~~~L~~L~l~ 536 (600)
.++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|+| ++|++.+..|..+ ..+++|+.|+++
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls 574 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIG 574 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECC
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECC
Confidence 999 6777776 99999999999999998 7888899999999999 5677887766555 779999999999
Q ss_pred CCcCcccCChhhHhccccceeeccCccee
Q 040154 537 SNRFIGKLPSKYFQCWNAMQVVNTSGLVT 565 (600)
Q Consensus 537 ~N~~~~~~~~~~~~~~~~l~~~~~~~~~~ 565 (600)
+|++ +.+|...+ +.|+.++++++..
T Consensus 575 ~N~l-~~ip~~~~---~~L~~L~Ls~N~l 599 (636)
T 4eco_A 575 SNDI-RKVNEKIT---PNISVLDIKDNPN 599 (636)
T ss_dssp SSCC-CBCCSCCC---TTCCEEECCSCTT
T ss_pred CCcC-CccCHhHh---CcCCEEECcCCCC
Confidence 9999 68886533 7999999998853
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-43 Score=374.94 Aligned_cols=470 Identities=21% Similarity=0.199 Sum_probs=310.9
Q ss_pred CCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEE
Q 040154 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV 99 (600)
Q Consensus 20 l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 99 (600)
+...+++|++++.+++ +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3445778888887774 444443 6788888888888766667778888888888888877766677777788888888
Q ss_pred ccCccCCCCcchhcCCCCCCCEEEccCCccccc-cCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCC--CEEEecCCC
Q 040154 100 LSKTNFSSDLPAFIGNLPSLEILDLSGNKISGE-LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSL--KRLSLESCS 176 (600)
Q Consensus 100 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L--~~L~l~~n~ 176 (600)
+++|++.. +|.. .+++|++|++++|.+.+. .|..+.++++|++|++++|.+.+. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 88877764 3333 677777777777777653 346677777777777777777643 23333444 777777776
Q ss_pred C--cccCCccccCCC-CCcEEeccccccccCCC-ccccCCCCCcEEEecCCcCC----CCCchhccCCCCCCEEEcCCCc
Q 040154 177 F--LGKLPPSVGNLT-QLQWLGLASNNFSGNLP-STIGNLRSLETLDISSCNFS----GPIPSSLRNLTQLSCLDLSRNH 248 (600)
Q Consensus 177 ~--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~ 248 (600)
+ .+..|..+..+. ..-.+++++|.+.+..+ ..+..+++|+.+++++|... ......+..+++|+.++++++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 6 555555555433 11134555555544322 23344556666666655311 0111234445555555555544
Q ss_pred cccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCC-ccchhh-----hCCCCCcEEECcCCC
Q 040154 249 FSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLT-EFPNFL-----KNQKNVAVLDLSSNR 322 (600)
Q Consensus 249 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~l-----~~~~~L~~L~l~~n~ 322 (600)
+.+..... .. .....++|+.+++++|.+. .+|..+ ..++.|+.+++..+.
T Consensus 261 l~~~~~~~-~~-----------------------~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 261 TTWKCSVK-LF-----------------------QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp ECHHHHHH-HH-----------------------HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred CcHHHHHH-HH-----------------------HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 43211000 00 0001224555555555544 444433 445555555555555
Q ss_pred CCCCCCh-hH----HhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccC
Q 040154 323 IHGKIPK-WL----LEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGI 397 (600)
Q Consensus 323 l~~~~~~-~~----~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~ 397 (600)
+ .+|. ++ ...+++.|++++|.+..... +...++++.+++++|.+++..
T Consensus 317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-------------------------PPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-------------------------CSSCCCCCEEECCSSCCCTTT
T ss_pred e--ecChhhhhhhhccCcceEEEccCCCcccccC-------------------------ccCCCCceEEECCCCccccch
Confidence 5 2332 11 12346666666665543221 022578888899999998888
Q ss_pred hhhhhccCCCCeeeCCCCccccc--CChhhhhccccCceEECCCCcccc-ccCccccCCCCccEEEccCCccccccCcch
Q 040154 398 APWICNLNFLEGLDLSRNNLSGL--LPHCLGNISNHLSILNLQHNKFFG-TIPQTFLGVEWLRMIDLSDNLLQGRIPRSL 474 (600)
Q Consensus 398 ~~~~~~~~~L~~L~L~~n~i~~~--~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 474 (600)
+..+.++++|+.|++++|++++. .|..+..++. |++|++++|++++ ..+..+..+++|++|++++|.+++..|..+
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS-LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT-CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC-CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 88899999999999999999963 3456777885 9999999999998 444568899999999999999988766655
Q ss_pred hcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHh-ccc
Q 040154 475 VNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQ-CWN 553 (600)
Q Consensus 475 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~-~~~ 553 (600)
. ++|++|+|++|+++. +|..+..+++|+.|+|++|+++++.+. .+..+++|+.|++++|++.|.||..||. .|.
T Consensus 449 ~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 523 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 523 (562)
T ss_dssp C--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEECCSCCBCCCHHHHHHHHHHH
T ss_pred c--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEecCCCcCCCcchHHHHHHHH
Confidence 4 799999999999985 455555999999999999999976433 3478899999999999999999988884 475
Q ss_pred cc
Q 040154 554 AM 555 (600)
Q Consensus 554 ~l 555 (600)
..
T Consensus 524 ~~ 525 (562)
T 3a79_B 524 NK 525 (562)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.8e-42 Score=372.01 Aligned_cols=538 Identities=20% Similarity=0.180 Sum_probs=408.2
Q ss_pred eecCcCCCCCC---CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcch
Q 040154 11 GGIPSSLGNLS---KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPA 87 (600)
Q Consensus 11 ~~l~~~~~~l~---~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 87 (600)
..+|.++..|. .-++.+-++-+++ .+|..+. +++++|+|++|+|++..+.+|.++++|++|+|++|.+++..+.
T Consensus 18 ~~~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~ 94 (635)
T 4g8a_A 18 SSIPESWEPCVEVVPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 94 (635)
T ss_dssp -------CCSEEEETTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCCccccCCCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence 45666665553 2346788887888 4554443 4799999999999988888999999999999999999988888
Q ss_pred hccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCc-chhhcCCCCC
Q 040154 88 VIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD-FSVSTGNLTS 166 (600)
Q Consensus 88 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~ 166 (600)
+|+++++|++|+|++|+++...+.+|.++++|++|++++|++++..+..|+++++|++|++++|.+... .+..+..+++
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence 999999999999999999988888999999999999999999987777899999999999999999764 5677888999
Q ss_pred CCEEEecCCCCcccCCccccCCCCC----cEEeccccccccCCCccccCCCCCcEEEecCCcCCC-CCchhccCCCCCCE
Q 040154 167 LKRLSLESCSFLGKLPPSVGNLTQL----QWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG-PIPSSLRNLTQLSC 241 (600)
Q Consensus 167 L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 241 (600)
|++|++++|.+.+..+..+..+..+ ..++++.|.+....+..+. ...+..+++.+|.... ..+..+..++.++.
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~ 253 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 253 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccc
Confidence 9999999999998877777655443 4788899988765554443 3456788888875542 33455667777776
Q ss_pred EEcCCCccccc-----cchhHHhhcCCCCCEEEccCCccc--eeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCc
Q 040154 242 LDLSRNHFSGG-----MELDVFLISLKNLEVLYLSSNRLS--VHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVA 314 (600)
Q Consensus 242 L~l~~n~~~~~-----~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~ 314 (600)
..+..+..... .....+ .....+....+..+... .............++.+.+..+.+..++. +.....++
T Consensus 254 ~~l~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~ 331 (635)
T 4g8a_A 254 HRLVLGEFRNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQ 331 (635)
T ss_dssp EEEEEECCTTSCCCSCCCTTTT-GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCS
T ss_pred cccccccccccccccccccccc-ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhh
Confidence 66543322211 111111 13344444444433211 12222222256788888888887775554 56678899
Q ss_pred EEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCC-----CCCCCcEEEcc
Q 040154 315 VLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPI-----PPPRTRNYLIS 389 (600)
Q Consensus 315 ~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~-----~~~~l~~l~l~ 389 (600)
.|++.+|.+....... ...++.++++.|.+...... ...+.+ +.++++.|.+...... ...+++.+++.
T Consensus 332 ~L~l~~~~~~~~~~~~--l~~L~~l~l~~n~~~~~~~~---~~l~~L-~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 332 HLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAFSE---VDLPSL-EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp EEEEESCEESSCCCCB--CTTCCEEEEESCCSCCBCCC---CBCTTC-CEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred hhhcccccccCcCccc--chhhhhcccccccCCCCccc---cccccc-ccchhhccccccccccccchhhhhhhhhhhcc
Confidence 9999999876544332 24588889988887665432 234444 8899999987654322 26789999999
Q ss_pred cCcccccChhhhhccCCCCeeeCCCCcccccCC-hhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCcc-c
Q 040154 390 NNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLP-HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLL-Q 467 (600)
Q Consensus 390 ~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~ 467 (600)
.+...... ..+..+++|+.++++++......+ ..+..+.. ++.++++.|.+.+..+..+..++.++.|++++|.+ .
T Consensus 406 ~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~-l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 406 FNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp SCSEEEEC-SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred cccccccc-ccccccccccchhhhhccccccccccccccccc-cccccccccccccccccccccchhhhhhhhhhccccc
Confidence 88876643 457789999999999988775554 34566664 99999999999999999999999999999999974 4
Q ss_pred cccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChh
Q 040154 468 GRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSK 547 (600)
Q Consensus 468 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~ 547 (600)
+..|..|..+++|++|+|++|+++++.|..|+++++|++|+|++|+|+++.+.. +..+++|+.||+++|++++..| .
T Consensus 484 ~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~ 560 (635)
T 4g8a_A 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKK-Q 560 (635)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG--GTTCTTCCEEECTTSCCCBCCS-S
T ss_pred ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH--HhCCCCCCEEECCCCcCCCCCH-H
Confidence 567889999999999999999999999999999999999999999999986544 4789999999999999997655 6
Q ss_pred hHhcc-ccceeeccCccee
Q 040154 548 YFQCW-NAMQVVNTSGLVT 565 (600)
Q Consensus 548 ~~~~~-~~l~~~~~~~~~~ 565 (600)
.|..+ +.|+.+++++++.
T Consensus 561 ~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CTTCCCTTCCEEECTTCCB
T ss_pred HHHhhhCcCCEEEeeCCCC
Confidence 67777 6899999999853
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-43 Score=370.58 Aligned_cols=455 Identities=20% Similarity=0.209 Sum_probs=352.3
Q ss_pred CEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCC
Q 040154 48 KELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGN 127 (600)
Q Consensus 48 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~ 127 (600)
++|++++|+++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 68999999999 6776666 89999999999999888889999999999999999999888899999999999999999
Q ss_pred ccccccCcccCCCCCCCEEEccCCCCCCc-chhhcCCCCCCCEEEecCCCCcccCCccccCCCCC--cEEecccccc--c
Q 040154 128 KISGELPDFFGNLPSLEELDLSGNQLSGD-FSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQL--QWLGLASNNF--S 202 (600)
Q Consensus 128 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 202 (600)
+++. +|.. .+++|++|++++|.+++. .|..++++++|++|++++|.+.+ ..+..++.| ++|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9984 4544 889999999999999873 57889999999999999999876 356777778 9999999998 6
Q ss_pred cCCCccccCCC-CCcEEEecCCcCCCCC-chhccCCCCCCEEEcCCCc-------cccccchhHHhhcCCCCCEEEccCC
Q 040154 203 GNLPSTIGNLR-SLETLDISSCNFSGPI-PSSLRNLTQLSCLDLSRNH-------FSGGMELDVFLISLKNLEVLYLSSN 273 (600)
Q Consensus 203 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~~~~~~L~~L~l~~n 273 (600)
+..|..+..+. ....+++++|.+.+.. ...+..+++|+.+++++|. +.+.++ ....+++|+.|++++|
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA---KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH---GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh---hhccccchhhcccccc
Confidence 66777766655 2335677777766543 3456778888888888876 322111 1235666666666655
Q ss_pred ccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhH------HhccCCceeccccccc
Q 040154 274 RLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWL------LEQNFSSLNLSHNLLT 347 (600)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~------~~~~L~~L~ls~n~l~ 347 (600)
.+.. +.+..++... ..++|+.|++++|.+++.+|..+ ...+|+.+++++|.+
T Consensus 231 ~l~~--------------------~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 231 ETTW--------------------NSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp EEEH--------------------HHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred ccCH--------------------HHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 3221 1111122222 24689999999999987777654 235578888888877
Q ss_pred CCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhh
Q 040154 348 GLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGN 427 (600)
Q Consensus 348 ~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 427 (600)
.++... .... ....+++.+++++|.+.... .+..+++|++|++++|.+++..|..+..
T Consensus 289 ~~p~~~-~~~~-------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 346 (520)
T 2z7x_B 289 GFPQSY-IYEI-------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGH 346 (520)
T ss_dssp CSCTHH-HHHH-------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCC
T ss_pred ecchhh-hhcc-------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhcc
Confidence 332100 0000 00135677777777765433 1257899999999999999988988888
Q ss_pred ccccCceEECCCCcccc--ccCccccCCCCccEEEccCCccccccC-cchhcCCCCcEEeCCCCcccccCCcccCCCCCC
Q 040154 428 ISNHLSILNLQHNKFFG--TIPQTFLGVEWLRMIDLSDNLLQGRIP-RSLVNCSNLEFLDLGNNQISDTFPSWLGALPNL 504 (600)
Q Consensus 428 ~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 504 (600)
++. |++|++++|++++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|++++..|..+. ++|
T Consensus 347 l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L 423 (520)
T 2z7x_B 347 LTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423 (520)
T ss_dssp CSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred CCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence 885 9999999999987 455779999999999999999998455 4588999999999999999888776664 899
Q ss_pred CEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccceeeccCccee
Q 040154 505 NILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTSGLVT 565 (600)
Q Consensus 505 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~~~~~~~ 565 (600)
+.|++++|+++.+ |... ..+++|+.|++++|+++ .+|...|..++.|+.+++++++.
T Consensus 424 ~~L~Ls~N~l~~i-p~~~--~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 424 KVLDLHSNKIKSI-PKQV--VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CEEECCSSCCCCC-CGGG--GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCccccc-chhh--hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence 9999999999955 3222 47899999999999998 68877789999999999999853
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-42 Score=377.93 Aligned_cols=431 Identities=20% Similarity=0.260 Sum_probs=290.9
Q ss_pred ccCCceeecCcCCCCCCCCcEEEC-CCCCCCCchhhh----------------------------------------h--
Q 040154 5 FLKKKTGGIPSSLGNLSKLIYLDL-SSNQLSGEIPAS----------------------------------------I-- 41 (600)
Q Consensus 5 ~~~~~~~~l~~~~~~l~~L~~L~L-s~~~l~~~~~~~----------------------------------------~-- 41 (600)
-..++.|.+|++|+++++|++|+| ++|.+.+..+.. +
T Consensus 331 s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 356788999999999999999999 777554321100 0
Q ss_pred ---------cCCCCCCEEEccC--CCCCCCCccccCCCCCCCEEEccccCCCC-----------------Ccchhcc--C
Q 040154 42 ---------GNLGSLKELDLST--NELSGRLPSSIGNLSSLEKLDLSLNVFSG-----------------DMPAVIG--N 91 (600)
Q Consensus 42 ---------~~l~~L~~L~l~~--~~i~~~~~~~l~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~ 91 (600)
.....++.+.+.. |++++ +|..++++++|++|++++|.+++ .+|..++ +
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred CccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 1111222233332 55554 67778888888888888887776 2666666 7
Q ss_pred CCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCc-ccc-ccCcccC-------CCCCCCEEEccCCCCCCcchh--h
Q 040154 92 LSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNK-ISG-ELPDFFG-------NLPSLEELDLSGNQLSGDFSV--S 160 (600)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~-------~l~~L~~L~l~~n~i~~~~~~--~ 160 (600)
+++|++|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+. .+++|++|++++|.+. .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 8888888888887777777778888888888888887 665 5555333 4457888888888877 5555 7
Q ss_pred cCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCC-CcEEEecCCcCCCCCchhccCCCC-
Q 040154 161 TGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRS-LETLDISSCNFSGPIPSSLRNLTQ- 238 (600)
Q Consensus 161 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~- 238 (600)
+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 777888888888888877 555 6777788888888888877 66667777777 888888888777 55566655543
Q ss_pred -CCEEEcCCCccccccchh---HHhhcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCCCCccchhhhC----
Q 040154 239 -LSCLDLSRNHFSGGMELD---VFLISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCNLTEFPNFLKN---- 309 (600)
Q Consensus 239 -L~~L~l~~n~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~l~~---- 309 (600)
|+.|++++|.+.+.++.. ......++|+.|++++|.+... ..... .+++|+.|++++|.+..+|..+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l--p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF--PTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC--CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc--CHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence 888888888776533210 0001344788888888865521 11111 467788888888888877764433
Q ss_pred ----CCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcE
Q 040154 310 ----QKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRN 385 (600)
Q Consensus 310 ----~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~ 385 (600)
+++|+.|++++|.++ .+|..+.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~----------------------------------------------------- 748 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFR----------------------------------------------------- 748 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGS-----------------------------------------------------
T ss_pred cccccCCccEEECCCCCCc-cchHHhh-----------------------------------------------------
Confidence 226777777777665 2222110
Q ss_pred EEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCC------CccccccCccccCCCCccEE
Q 040154 386 YLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQH------NKFFGTIPQTFLGVEWLRMI 459 (600)
Q Consensus 386 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~------n~i~~~~~~~~~~l~~L~~L 459 (600)
...+++|+.|+|++|.+++ +|..+..++. |++|+|++ |++.+.+|..+..+++|+.|
T Consensus 749 ---------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~-L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 749 ---------------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ-LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp ---------------TTTCTTCCEEECCSSCCSS-CCCGGGGCTT-CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ---------------hccCCCcCEEEeCCCCCCc-cchhhhcCCC-CCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 0135556666666666664 4555555553 66666654 77777888888888888888
Q ss_pred EccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 460 DLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 460 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
+|++|.+ +.+|..+. ++|++|+|++|++..+.+..+.....+..+.|..|+...+
T Consensus 812 ~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp ECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred ECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 8888888 46676654 6888999999988877766666555666667777766554
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-40 Score=345.16 Aligned_cols=148 Identities=26% Similarity=0.327 Sum_probs=133.8
Q ss_pred cCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEE
Q 040154 404 LNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFL 483 (600)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 483 (600)
.++|+.|++++|.+++..|..+..++. |++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred ccCceEEEecCccccccchhhcccCCC-CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 467999999999999888888888885 9999999999998889999999999999999999998889999999999999
Q ss_pred eCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCC-hhhHhcccc
Q 040154 484 DLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP-SKYFQCWNA 554 (600)
Q Consensus 484 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~ 554 (600)
+|++|+++++.|.+|..+++|++|++++|+++++.+.. +..+++|+.|++++|+++|.|| ..++..|-.
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhH--hccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence 99999999999999999999999999999999875443 3678999999999999999999 567777753
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-39 Score=345.72 Aligned_cols=445 Identities=19% Similarity=0.198 Sum_probs=319.4
Q ss_pred ecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccC
Q 040154 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGN 91 (600)
Q Consensus 12 ~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 91 (600)
.+|..+. +++++|++++|.+++..+.+|+++++|++|++++|++++..|.+|.++++|++|++++|.++ .+|.. .
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 4777665 79999999999999888899999999999999999999888999999999999999999998 45554 8
Q ss_pred CCCCCEEEccCccCCCC-cchhcCCCCCCCEEEccCCccccccCcccCCCCCC--CEEEccCCCC--CCcchhhcCCCC-
Q 040154 92 LSSLKALVLSKTNFSSD-LPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSL--EELDLSGNQL--SGDFSVSTGNLT- 165 (600)
Q Consensus 92 l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~n~i--~~~~~~~~~~~~- 165 (600)
+++|++|++++|++.+. .|..++++++|++|++++|.+.+. .+..++.| ++|++++|.+ ++..+..+..+.
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 99999999999999873 468899999999999999998753 34455555 9999999999 777777776554
Q ss_pred CCCEEEecCCCCcccCC-ccccCCCCCcEEecccccc-----ccCCCccccCCCCCcEEEecCCcCCCCCchh---ccCC
Q 040154 166 SLKRLSLESCSFLGKLP-PSVGNLTQLQWLGLASNNF-----SGNLPSTIGNLRSLETLDISSCNFSGPIPSS---LRNL 236 (600)
Q Consensus 166 ~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l-----~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l 236 (600)
..-.+++++|.+.+..+ ..+..+++|+.+++++|.. .+ ....+..++.|+.+++.++.+.+..... ....
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 12256788888776544 3456889999999999852 21 2235677889999999888766432111 1123
Q ss_pred CCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCC-----CCCCcccEEEecCCCCCccchhhhCCC
Q 040154 237 TQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSS-----TTSQKFGTVGLRSCNLTEFPNFLKNQK 311 (600)
Q Consensus 237 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~~~L~~l~l~~~~l~~~~~~l~~~~ 311 (600)
++|++|++++|.+.+.++...+.....+++.|.+.++..... ..+.. ....+++.+++++|.+...+. ...++
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~ 353 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPS 353 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCC
Confidence 589999999998876554332211123444444333211110 00000 011345555555555543221 13444
Q ss_pred CCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccC
Q 040154 312 NVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNN 391 (600)
Q Consensus 312 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n 391 (600)
+|+.|++++|.+++..+..+. ..++++.|++++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~----------------------------------------------~l~~L~~L~L~~N 387 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCS----------------------------------------------TLKRLQTLILQRN 387 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCC----------------------------------------------SCSSCCEEECCSS
T ss_pred CceEEECCCCccccchhhhhc----------------------------------------------ccCCCCEEECCCC
Confidence 555555555554443332220 1345666666666
Q ss_pred cccc--cChhhhhccCCCCeeeCCCCcccccCCh-hhhhccccCceEECCCCccccccCccccCCCCccEEEccCCcccc
Q 040154 392 SLIG--GIAPWICNLNFLEGLDLSRNNLSGLLPH-CLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQG 468 (600)
Q Consensus 392 ~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 468 (600)
.+.+ ..+..+.++++|+.|++++|.+++.+|. .+..++ +|++|++++|++++..+..+. ++|+.|+|++|+++
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~- 463 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE-SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT-TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc-cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-
Confidence 6665 2345688899999999999999984554 455666 499999999999877665543 79999999999999
Q ss_pred ccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 469 RIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 469 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
.+|..+.++++|++|+|++|+++.+.+..|..+++|+.|++++|++...
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 5666666999999999999999976666699999999999999998753
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.3e-39 Score=332.45 Aligned_cols=387 Identities=21% Similarity=0.208 Sum_probs=241.1
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCC-cchhccCCCCCCEEEccC
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGD-MPAVIGNLSSLKALVLSK 102 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~ 102 (600)
+.++.++++++. +|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+. .+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 345666666652 232 2 25666666666666655566666666666666666655432 234556666666666666
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCc--ccCCCCCCCEEEccCCCCCCcchhh-cCCCCCCCEEEecCCCCcc
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPD--FFGNLPSLEELDLSGNQLSGDFSVS-TGNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~~~~ 179 (600)
|.+.+..|..++++++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 666555555555666666666666655542222 2455555555555555554443332 3444444444444444444
Q ss_pred cCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchh--------ccCCCCCCEEEcCCCcccc
Q 040154 180 KLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSS--------LRNLTQLSCLDLSRNHFSG 251 (600)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~~~~ 251 (600)
..+..+..+. ..+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+
T Consensus 169 ~~~~~l~~l~----------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 169 ICEEDLLNFQ----------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp CCTTTSGGGT----------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred cChhhhhccc----------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc
Confidence 4333333220 034455555555544332221 2355678888888887764
Q ss_pred ccchhHHh-hcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChh
Q 040154 252 GMELDVFL-ISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKW 330 (600)
Q Consensus 252 ~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 330 (600)
..+..... ...++|+.+++++|...... +..+.+.+..+..
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------------------~~~~~~~~~~~~~ 268 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------------------------------FGHTNFKDPDNFT 268 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------------------------------TTCCSSCCCCTTT
T ss_pred cchhhhhccccccceeeEeeccccccccc--------------------------------------cchhhhccCcccc
Confidence 33322111 01245555555554211000 0000000000000
Q ss_pred HHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCee
Q 040154 331 LLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGL 410 (600)
Q Consensus 331 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 410 (600)
+ . ....++++.+++++|.+.+..+..+..+++|++|
T Consensus 269 ~-----------------------------------------~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 304 (455)
T 3v47_A 269 F-----------------------------------------K---GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304 (455)
T ss_dssp T-----------------------------------------G---GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred c-----------------------------------------c---cccccCceEEEecCccccccchhhcccCCCCCEE
Confidence 0 0 0012355566666666666667778889999999
Q ss_pred eCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcc
Q 040154 411 DLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQI 490 (600)
Q Consensus 411 ~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 490 (600)
++++|.+++..|..+..++. |++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 305 ~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp ECTTSCCCEECTTTTTTCTT-CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccChhHhcCccc-CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 99999999888889988885 99999999999988889999999999999999999998899999999999999999999
Q ss_pred cccCCcccCCCCCCCEEEccCccceeecC
Q 040154 491 SDTFPSWLGALPNLNILILQSNKFHGIIR 519 (600)
Q Consensus 491 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 519 (600)
+++.+..|+.+++|+.|++++|++++..+
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 98888889999999999999999986643
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-39 Score=332.09 Aligned_cols=200 Identities=24% Similarity=0.245 Sum_probs=107.5
Q ss_pred CCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 19 ~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|.+++++.+|+++++..|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 357888888888888 47788888888888888888888878888888887765555554421 345666
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCc
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFL 178 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 178 (600)
++++|.+++. |. -.++|++|++++|.+++ +|.. .++|++|++++|.+++... ..++|++|++++|.+.
T Consensus 77 ~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCS
T ss_pred EecCCccccC-CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCC
Confidence 6666666542 22 12566667776666664 3332 2566666666666654221 1146667777766666
Q ss_pred ccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccc
Q 040154 179 GKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250 (600)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 250 (600)
+ +| .+..+++|++|++++|++++ +|.. .++|++|++++|.+.+. | .+..+++|+.|++++|.+.
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC
Confidence 5 34 46666677777777776664 2322 24666777777666652 3 4666666666666666655
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-37 Score=321.70 Aligned_cols=370 Identities=19% Similarity=0.203 Sum_probs=212.8
Q ss_pred cCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCC
Q 040154 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSS 94 (600)
Q Consensus 15 ~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 94 (600)
.+++++++|++|++++|.+++. | .++.+++|++|++++|.+++. + ++.+++|++|++++|.+.+. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 3556666666666666666643 2 466666666666666666643 2 56666666666666666543 2 556666
Q ss_pred CCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecC
Q 040154 95 LKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174 (600)
Q Consensus 95 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 174 (600)
|++|++++|++.+. + ++.+++|++|++++|.+++. .+..+++|++|++++|...+.. .
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~-------------- 165 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--D-------------- 165 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--C--------------
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--c--------------
Confidence 66666666665542 2 55556666666666665542 1445555555555555322222 2
Q ss_pred CCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccc
Q 040154 175 CSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGME 254 (600)
Q Consensus 175 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 254 (600)
+..+++|++|++++|++++. + +..+++|+.|++++|.+++. .+..+++|+.|++++|++.+ ++
T Consensus 166 ----------~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 166 ----------VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp ----------CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred ----------cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 33444455555555544432 1 44445555555555555443 24455555555555555543 21
Q ss_pred hhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhc
Q 040154 255 LDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQ 334 (600)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 334 (600)
...+++|+.|++++|++. .+| +..+++|+.|+++.+.
T Consensus 229 ----~~~l~~L~~L~l~~N~l~-------------------------~~~--~~~l~~L~~L~l~~n~------------ 265 (457)
T 3bz5_A 229 ----VTPLTQLTYFDCSVNPLT-------------------------ELD--VSTLSKLTTLHCIQTD------------ 265 (457)
T ss_dssp ----CTTCTTCSEEECCSSCCS-------------------------CCC--CTTCTTCCEEECTTCC------------
T ss_pred ----ccccCCCCEEEeeCCcCC-------------------------CcC--HHHCCCCCEEeccCCC------------
Confidence 113444444444444321 111 2234455555554442
Q ss_pred cCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCC
Q 040154 335 NFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSR 414 (600)
Q Consensus 335 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 414 (600)
++.+++++|.+. +.+| +..+++|+.|++++
T Consensus 266 -L~~L~l~~n~~~-----------------------------------------------~~~~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 266 -LLEIDLTHNTQL-----------------------------------------------IYFQ--AEGCRKIKELDVTH 295 (457)
T ss_dssp -CSCCCCTTCTTC-----------------------------------------------CEEE--CTTCTTCCCCCCTT
T ss_pred -CCEEECCCCccC-----------------------------------------------Cccc--ccccccCCEEECCC
Confidence 333444433321 1111 23467788888888
Q ss_pred CcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccC
Q 040154 415 NNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTF 494 (600)
Q Consensus 415 n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~ 494 (600)
|...+.+|.. .+ .|+.|++++| ++|+.|++++|++++. .+.++++|++|++++|+++++
T Consensus 296 n~~l~~l~~~---~~-~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l- 354 (457)
T 3bz5_A 296 NTQLYLLDCQ---AA-GITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF- 354 (457)
T ss_dssp CTTCCEEECT---TC-CCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC-
T ss_pred CcccceeccC---CC-cceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc-
Confidence 8766665532 22 3665555544 6788888888888874 278888888888888888752
Q ss_pred CcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccceeec
Q 040154 495 PSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVN 559 (600)
Q Consensus 495 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~ 559 (600)
+.|..|++++|.+.+. ..+..|+.+++++|+++|.+|..++..+.++....
T Consensus 355 -------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~ 405 (457)
T 3bz5_A 355 -------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405 (457)
T ss_dssp -------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred -------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence 5667778888888876 13456778889999999999888777777665543
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-37 Score=316.23 Aligned_cols=403 Identities=22% Similarity=0.267 Sum_probs=257.7
Q ss_pred CCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEE
Q 040154 43 NLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEIL 122 (600)
Q Consensus 43 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 122 (600)
..++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++++|+.+++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 358899999999999 58888899999999999999988888888888888888777776642 568999
Q ss_pred EccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccc
Q 040154 123 DLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 123 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
++++|.+++ +|. -.++|++|++++|.+++ .+. ..++|++|++++|.+.+.. . + .++|++|++++|+++
T Consensus 77 ~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~-~-~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALS-D-L--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC-S-C--CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCC---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCccc-C-C--CCCCCEEECcCCCCC
Confidence 999999885 333 23789999999999987 343 2479999999999987642 2 1 268999999999998
Q ss_pred cCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccC
Q 040154 203 GNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKAT 282 (600)
Q Consensus 203 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 282 (600)
+ +| .+..+++|++|++++|.+++ .|.. .++|++|++++|.+.+ ++ . ...+++|++|++++|.+.....
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~-~~~l~~L~~L~l~~N~l~~l~~-- 212 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--E-LQNLPFLTAIYADNNSLKKLPD-- 212 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--C-CTTCTTCCEEECCSSCCSSCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--c-ccCCCCCCEEECCCCcCCcCCC--
Confidence 6 55 58999999999999999886 3432 3589999999999876 33 2 3478999999999996643221
Q ss_pred CCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCC
Q 040154 283 SSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRP 362 (600)
Q Consensus 283 ~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~ 362 (600)
.+++|+.+++++|.+..+|. +..+++|+.|++++|.+++. |.. ..+++.|++++|+++.++.
T Consensus 213 ---~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~N~l~~l~~----------- 274 (454)
T 1jl5_A 213 ---LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTL-PDL--PPSLEALNVRDNYLTDLPE----------- 274 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-CSC--CTTCCEEECCSSCCSCCCC-----------
T ss_pred ---CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcc-ccc--ccccCEEECCCCcccccCc-----------
Confidence 23588899999998888875 77888888888888888752 222 2446666666666555332
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF 442 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 442 (600)
.+++++.+++++|.+++... -.++|+.|++++|.+++. + .++.+|++|++++|++
T Consensus 275 ----------------~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 275 ----------------LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKL 329 (454)
T ss_dssp ----------------CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCC
T ss_pred ----------------ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcc
Confidence 23566667777776665211 125788888888888752 2 2333589999999988
Q ss_pred ccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccc--cCCcccCCCCCCCEEEccCccceeecCC
Q 040154 443 FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISD--TFPSWLGALPNLNILILQSNKFHGIIRE 520 (600)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 520 (600)
++ +|.. +++|++|++++|.+++ +|. .+++|++|++++|++++ .+|.++..+ +.|.+.+..|.
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~ 393 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE 393 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------
T ss_pred cc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc
Confidence 86 4433 5788999999998884 554 46889999999999887 556555433 23444333222
Q ss_pred CCCCCCCCcceEEEccCCcCcc--cCC
Q 040154 521 PGTDCGFPKLRIIDISSNRFIG--KLP 545 (600)
Q Consensus 521 ~~~~~~~~~L~~L~l~~N~~~~--~~~ 545 (600)
.+++|+.|++++|++++ .+|
T Consensus 394 -----~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 394 -----LPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp ---------------------------
T ss_pred -----ccCcCCEEECCCCcCCccccch
Confidence 13566777777777665 444
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-34 Score=301.60 Aligned_cols=209 Identities=30% Similarity=0.402 Sum_probs=110.3
Q ss_pred CCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEE
Q 040154 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV 99 (600)
Q Consensus 20 l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 99 (600)
++++++|+++++.++.. + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 45666666666666532 2 35556666666666666663322 6666666666666666654433 56666666666
Q ss_pred ccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcc
Q 040154 100 LSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 100 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 179 (600)
+++|.+.+..+ +.++++|++|++++|.+.+. ..+..+++|++|++++ .+.+..
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~~---------------------- 171 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLK---------------------- 171 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCCG----------------------
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCch----------------------
Confidence 66666554422 55566666666666655532 2355555555555542 222211
Q ss_pred cCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHh
Q 040154 180 KLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFL 259 (600)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 259 (600)
.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. .. .
T Consensus 172 ----~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~-l 239 (466)
T 1o6v_A 172 ----PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GT-L 239 (466)
T ss_dssp ----GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---GG-G
T ss_pred ----hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc---hh-h
Confidence 244444555555555544432 234455555555555555554433 44555666666666655431 11 1
Q ss_pred hcCCCCCEEEccCC
Q 040154 260 ISLKNLEVLYLSSN 273 (600)
Q Consensus 260 ~~~~~L~~L~l~~n 273 (600)
..+++|+.|++++|
T Consensus 240 ~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 240 ASLTNLTDLDLANN 253 (466)
T ss_dssp GGCTTCSEEECCSS
T ss_pred hcCCCCCEEECCCC
Confidence 24555555555555
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-34 Score=299.42 Aligned_cols=346 Identities=29% Similarity=0.377 Sum_probs=211.9
Q ss_pred CCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEE
Q 040154 44 LGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILD 123 (600)
Q Consensus 44 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 123 (600)
++++++|+++++.++ .+| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~------------- 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP------------- 107 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------------
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-------------
Confidence 445555666555555 233 24555555555555555543322 4555555555555555443322
Q ss_pred ccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEecccccccc
Q 040154 124 LSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSG 203 (600)
Q Consensus 124 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 203 (600)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|+++ +.+.+
T Consensus 108 -------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 108 -------------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp -------------GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCC
T ss_pred -------------hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccC
Confidence 4444555555555554444322 55566666666666665543 246777888888886 44443
Q ss_pred CCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCC
Q 040154 204 NLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATS 283 (600)
Q Consensus 204 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 283 (600)
. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+...
T Consensus 170 ~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~----- 236 (466)
T 1o6v_A 170 L--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI----- 236 (466)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC-----
T ss_pred c--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccc-----
Confidence 3 3488999999999999998865 358899999999999999876433 23678888888888754321
Q ss_pred CCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCc
Q 040154 284 STTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPF 363 (600)
Q Consensus 284 ~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~ 363 (600)
+ .+..+++|+.|++++|.+.+..+ ....
T Consensus 237 --------------------~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l------------------------------ 264 (466)
T 1o6v_A 237 --------------------G-TLASLTNLTDLDLANNQISNLAP-LSGL------------------------------ 264 (466)
T ss_dssp --------------------G-GGGGCTTCSEEECCSSCCCCCGG-GTTC------------------------------
T ss_pred --------------------h-hhhcCCCCCEEECCCCccccchh-hhcC------------------------------
Confidence 1 24445556666666655543221 1111
Q ss_pred EEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccc
Q 040154 364 SLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFF 443 (600)
Q Consensus 364 ~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~ 443 (600)
++++.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..++. |++|++++|+++
T Consensus 265 -----------------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~L~~n~l~ 322 (466)
T 1o6v_A 265 -----------------TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNIS 322 (466)
T ss_dssp -----------------TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT-CSEEECCSSCCS
T ss_pred -----------------CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC-CCEEECcCCcCC
Confidence 122222222222222211 4456677777777777775433 555664 777777777777
Q ss_pred cccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 444 GTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 444 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
+..+ +..+++|+.|++++|.+++. ..+.++++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 323 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred Cchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 6544 56777777777777777754 357777788888888887777665 67777888888888877764
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=307.11 Aligned_cols=138 Identities=21% Similarity=0.188 Sum_probs=109.5
Q ss_pred CCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEe
Q 040154 405 NFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLD 484 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 484 (600)
.+|+.|++++|.+++..+..+..++. |++|++++|++++..+..|..+++|+.|+|++|.+.+..+..|.++++|++|+
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTT-CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred ccccEEECcCCcccccCHHHhcCccc-cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 46889999999998655567777775 99999999999988888899999999999999999988888999999999999
Q ss_pred CCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCCh
Q 040154 485 LGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPS 546 (600)
Q Consensus 485 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~ 546 (600)
|++|+++++.+..|..+++|+.|+|++|++...-. .. .-......+++.++...|..|.
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~--~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR--LL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG--GH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCccCccc--hH-hHHhhhhccccCccCceeCCch
Confidence 99999998888888999999999999999874311 00 0011223345667777777764
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=300.69 Aligned_cols=92 Identities=26% Similarity=0.321 Sum_probs=84.8
Q ss_pred hhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCC
Q 040154 400 WICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSN 479 (600)
Q Consensus 400 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 479 (600)
.+..+++|+.|++++|.+++..+..+..++. |++|++++|++++..+..|.++++|+.|+|++|.+++..+..|.++++
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTT-CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HhcCccccCeeECCCCcCCccChhhcccccc-CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 4667889999999999999888888888885 999999999999999999999999999999999999888888999999
Q ss_pred CcEEeCCCCcccc
Q 040154 480 LEFLDLGNNQISD 492 (600)
Q Consensus 480 L~~L~Ls~n~l~~ 492 (600)
|++|+|++|.+..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 9999999999974
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-33 Score=287.68 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=104.2
Q ss_pred CCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEe
Q 040154 405 NFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLD 484 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 484 (600)
++|+.|++++|.+++. ..+..++. |++|++++|++++..|..|..+++|+.|++++|.+++ ++..+..+++|++|+
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCccc--HHHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 3456666666666543 34555554 7777777777777777777778888888888888775 344556788888888
Q ss_pred CCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccce
Q 040154 485 LGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQ 556 (600)
Q Consensus 485 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~ 556 (600)
|++|+++++ |..+..+++|+.|++++|+++.+. ...+++|+.|++++|++.|.+...++..|....
T Consensus 302 L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 302 LSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp CCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred CCCCcceec-CccccccCcCCEEECCCCccceeC-----chhhccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 888888744 455677888999999999887662 356789999999999999988777777766544
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-32 Score=284.28 Aligned_cols=347 Identities=20% Similarity=0.172 Sum_probs=223.1
Q ss_pred cCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCC
Q 040154 65 IGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLE 144 (600)
Q Consensus 65 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 144 (600)
++++++|++|++++|.+.+. | .++.+++|++|++++|.+.+. + ++.+++|++|++++|.+++. + +..+++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 33444444444444444322 2 234444444444444444432 1 44445555555555554432 1 44555555
Q ss_pred EEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCc
Q 040154 145 ELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCN 224 (600)
Q Consensus 145 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 224 (600)
+|++++|.+++. + +..+++|++|++++|.+.+. .+..+++|++|++++|+..+.. .+..+++|+.|++++|.
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 555555555542 1 55566666666666666653 2667788888888888544343 47788999999999999
Q ss_pred CCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccc
Q 040154 225 FSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFP 304 (600)
Q Consensus 225 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~ 304 (600)
+++. + +..+++|+.|++++|.+.+. + ...+++|++|++++| ++..+|
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~-~----l~~l~~L~~L~Ls~N-------------------------~l~~ip 228 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL-D----LNQNIQLTFLDCSSN-------------------------KLTEID 228 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC-C----CTTCTTCSEEECCSS-------------------------CCSCCC
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee-c----cccCCCCCEEECcCC-------------------------cccccC
Confidence 9975 3 78899999999999998752 1 124555555555555 445555
Q ss_pred hhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCCCc
Q 040154 305 NFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTR 384 (600)
Q Consensus 305 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~ 384 (600)
+..+++|+.|++++|.+++..+. ..++++
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~-------------------------------------------------~l~~L~ 257 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVS-------------------------------------------------TLSKLT 257 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCT-------------------------------------------------TCTTCC
T ss_pred --ccccCCCCEEEeeCCcCCCcCHH-------------------------------------------------HCCCCC
Confidence 56778888888888887653211 123444
Q ss_pred EEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCC
Q 040154 385 NYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDN 464 (600)
Q Consensus 385 ~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 464 (600)
.++++.| .|+.|++++|.+.+.+| +..++. |++|++++|...+.+|. ...+|+.|++++|
T Consensus 258 ~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~-L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 258 TLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRK-IKELDVTHNTQLYLLDC---QAAGITELDLSQN 317 (457)
T ss_dssp EEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTT-CCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC
T ss_pred EEeccCC--------------CCCEEECCCCccCCccc--cccccc-CCEEECCCCcccceecc---CCCcceEechhhc
Confidence 4444432 47788899998777766 345564 99999999987666553 3455555555544
Q ss_pred ccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccC
Q 040154 465 LLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKL 544 (600)
Q Consensus 465 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~ 544 (600)
++|++|++++|+++++ + ++.+++|+.|++++|+++++ +.|..|++++|.+.|.
T Consensus 318 -------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l----------~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 318 -------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF----------SSVGKIPALNNNFEAE- 370 (457)
T ss_dssp -------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC----------TTGGGSSGGGTSEEEE-
T ss_pred -------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc----------cccccccccCCcEEec-
Confidence 7899999999999985 3 88999999999999999864 4567778999999876
Q ss_pred ChhhHhccccceeeccCcc
Q 040154 545 PSKYFQCWNAMQVVNTSGL 563 (600)
Q Consensus 545 ~~~~~~~~~~l~~~~~~~~ 563 (600)
..+..+..++++.+
T Consensus 371 -----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 371 -----GQTITMPKETLTNN 384 (457)
T ss_dssp -----EEEEECCCBCCBTT
T ss_pred -----ceeeecCccccccC
Confidence 23444555555444
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-33 Score=298.42 Aligned_cols=140 Identities=21% Similarity=0.189 Sum_probs=87.7
Q ss_pred CCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeC
Q 040154 406 FLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDL 485 (600)
Q Consensus 406 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L 485 (600)
+|+.|++++|.+++ +..+..++. |++|++++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|++|+|
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred CCCEEECCCCCCCC--ChhhccCCC-CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 34555555555543 234444553 6666666666666666666666666666666666664 3444556677777777
Q ss_pred CCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccc
Q 040154 486 GNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAM 555 (600)
Q Consensus 486 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l 555 (600)
++|.++. +|..+..+++|+.|+|++|++++.. +..+++|+.|++++|++.|.+...++..|...
T Consensus 309 s~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 372 (597)
T 3oja_B 309 SHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 372 (597)
T ss_dssp CSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred CCCCCCc-cCcccccCCCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhh
Confidence 7777763 4445566777777777777776551 24567778888888888777766666655443
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.2e-31 Score=263.64 Aligned_cols=101 Identities=33% Similarity=0.432 Sum_probs=46.0
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEE
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRL 170 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 170 (600)
.+++|++|+++++.+... ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 445555555555555432 124445555555555555543222 44555555555555544432 134444444444
Q ss_pred EecCCCCcccCCccccCCCCCcEEecccc
Q 040154 171 SLESCSFLGKLPPSVGNLTQLQWLGLASN 199 (600)
Q Consensus 171 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 199 (600)
++++|.+.+..+ +..+++|++|++++|
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGAN 142 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCC
Confidence 444444433211 334444444444444
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.2e-31 Score=263.11 Aligned_cols=307 Identities=24% Similarity=0.342 Sum_probs=252.6
Q ss_pred CCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCC
Q 040154 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 95 (600)
.+..+++|++|+++++.++.. ..++.+++|++|++++|.+++. +. +..+++|++|++++|.+... ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cchhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 456788999999999999854 3488999999999999999854 43 99999999999999998753 368999999
Q ss_pred CEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCC
Q 040154 96 KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESC 175 (600)
Q Consensus 96 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 175 (600)
++|++++|.+....+ +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999987543 889999999999999665443 448999999999999999887654 788999999999999
Q ss_pred CCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccch
Q 040154 176 SFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMEL 255 (600)
Q Consensus 176 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 255 (600)
.+.+..+ +..++.|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--- 258 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--- 258 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---
Confidence 9886533 8889999999999999986543 7889999999999999986654 88999999999999998752
Q ss_pred hHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCC-ccchhhhCCCCCcEEECcCCCCCCCCChhHHhc
Q 040154 256 DVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLT-EFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQ 334 (600)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 334 (600)
.. ...+++|++|++++|.+... .....+++|+.+++++|.+. ..+..+..+++|+.|++++|.+++..+ ....+
T Consensus 259 ~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~ 333 (347)
T 4fmz_A 259 NA-VKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLS 333 (347)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCT
T ss_pred hh-HhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhh
Confidence 22 34789999999999976543 22236789999999999988 445678889999999999999887666 44456
Q ss_pred cCCceeccccccc
Q 040154 335 NFSSLNLSHNLLT 347 (600)
Q Consensus 335 ~L~~L~ls~n~l~ 347 (600)
+|+.|++++|.++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 6888888888764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=4.2e-31 Score=268.55 Aligned_cols=311 Identities=21% Similarity=0.211 Sum_probs=247.1
Q ss_pred CCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 19 ~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
.++++++|+++++.++...+..+..+++|++|++++|.+++..+.+|+++++|++|++++|.+.+..+..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999987767778999999999999999997777789999999999999999998888889999999999
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCc
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFL 178 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 178 (600)
++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999877667788999999999999999888788899999999999999988864 3556788999999999876
Q ss_pred ccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHH
Q 040154 179 GKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF 258 (600)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 258 (600)
+. ...+.|++|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ ..+
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~-~~~ 268 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY-HPF 268 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES-GGG
T ss_pred cc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh-hHc
Confidence 43 344689999999998875422 2347899999999988864 568888999999999998875332 223
Q ss_pred hhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCc
Q 040154 259 LISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSS 338 (600)
Q Consensus 259 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 338 (600)
..+++|++|++++|.+.... .....+++|+.|++++|++..+|..+..+++|+.|++++|.+++.. ....++|+.
T Consensus 269 -~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 -VKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKN 343 (390)
T ss_dssp -TTCSSCCEEECCSSCCCEEE--CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSE
T ss_pred -cccccCCEEECCCCcCcccC--cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCE
Confidence 37888999999988665432 2223567888888888888877777777788888888888876542 112344666
Q ss_pred eecccccccC
Q 040154 339 LNLSHNLLTG 348 (600)
Q Consensus 339 L~ls~n~l~~ 348 (600)
|++++|.+..
T Consensus 344 L~l~~N~~~~ 353 (390)
T 3o6n_A 344 LTLSHNDWDC 353 (390)
T ss_dssp EECCSSCEEH
T ss_pred EEcCCCCccc
Confidence 6666666553
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.1e-34 Score=298.94 Aligned_cols=211 Identities=19% Similarity=0.245 Sum_probs=106.8
Q ss_pred CCCcEEECCCCCCCCchhhh-hcCCCCCCEEEccCCCCCC----CCccccCCCCCCCEEEccccCCCCCcchhc-cCCC-
Q 040154 21 SKLIYLDLSSNQLSGEIPAS-IGNLGSLKELDLSTNELSG----RLPSSIGNLSSLEKLDLSLNVFSGDMPAVI-GNLS- 93 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~-~~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~- 93 (600)
++|++||++++.+++..... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888777543333 6677778888888877763 234556666777777777776654333222 2233
Q ss_pred ---CCCEEEccCccCCC----CcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCC
Q 040154 94 ---SLKALVLSKTNFSS----DLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTS 166 (600)
Q Consensus 94 ---~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 166 (600)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+.. ......++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhcCCCc
Confidence 46666666665553 23445555555555555555544221111100 00112234
Q ss_pred CCEEEecCCCCcccC----CccccCCCCCcEEeccccccccCCCcccc-----CCCCCcEEEecCCcCCCC----Cchhc
Q 040154 167 LKRLSLESCSFLGKL----PPSVGNLTQLQWLGLASNNFSGNLPSTIG-----NLRSLETLDISSCNFSGP----IPSSL 233 (600)
Q Consensus 167 L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~ 233 (600)
|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. .+..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 444444444444321 22334445555555555554432222221 133555555555555432 23344
Q ss_pred cCCCCCCEEEcCCCccc
Q 040154 234 RNLTQLSCLDLSRNHFS 250 (600)
Q Consensus 234 ~~l~~L~~L~l~~n~~~ 250 (600)
..+++|++|++++|.+.
T Consensus 224 ~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 224 ASKASLRELALGSNKLG 240 (461)
T ss_dssp HHCTTCCEEECCSSBCH
T ss_pred HhCCCccEEeccCCcCC
Confidence 44555555555555443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.2e-30 Score=277.55 Aligned_cols=310 Identities=21% Similarity=0.213 Sum_probs=248.4
Q ss_pred CCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 19 ~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
.+++++.++++++.++...+..++.+++|++|++++|.+++..+.+|+.+++|++|++++|.+.+..+..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35788999999999987777888999999999999999998888899999999999999999998888889999999999
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCc
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFL 178 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 178 (600)
++++|.+....+..|+++++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999877777899999999999999999888888999999999999999988653 456788999999999876
Q ss_pred ccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHH
Q 040154 179 GKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF 258 (600)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 258 (600)
+. ...+.|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ ..+
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~ 274 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY-HPF 274 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES-GGG
T ss_pred cc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH-HHh
Confidence 43 34568999999999887543322 36899999999998863 668888999999999998876433 223
Q ss_pred hhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCc
Q 040154 259 LISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSS 338 (600)
Q Consensus 259 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 338 (600)
..+++|+.|++++|.+.... .....+++|+.|++++|.+..+|..+..+++|+.|++++|.+++.... ..++|+.
T Consensus 275 -~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~L~~ 349 (597)
T 3oja_B 275 -VKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS--THHTLKN 349 (597)
T ss_dssp -TTCSSCCEEECTTSCCCEEE--CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC--TTCCCSE
T ss_pred -cCccCCCEEECCCCCCCCCC--cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChh--hcCCCCE
Confidence 37888999999998665432 222357788888888888888887777788888888888887654321 2234666
Q ss_pred eeccccccc
Q 040154 339 LNLSHNLLT 347 (600)
Q Consensus 339 L~ls~n~l~ 347 (600)
|++++|.+.
T Consensus 350 L~l~~N~~~ 358 (597)
T 3oja_B 350 LTLSHNDWD 358 (597)
T ss_dssp EECCSSCEE
T ss_pred EEeeCCCCC
Confidence 666666654
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1e-33 Score=295.06 Aligned_cols=187 Identities=24% Similarity=0.283 Sum_probs=129.8
Q ss_pred CCCCCCCCcEEECCCCCCCC----chhhhhcCCCCCCEEEccCCCCCCCCcccc-CCCC----CCCEEEccccCCCC---
Q 040154 16 SLGNLSKLIYLDLSSNQLSG----EIPASIGNLGSLKELDLSTNELSGRLPSSI-GNLS----SLEKLDLSLNVFSG--- 83 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~----~L~~L~l~~n~~~~--- 83 (600)
.+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.+..
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 37788999999999999984 356778889999999999999975444333 2344 79999999999874
Q ss_pred -CcchhccCCCCCCEEEccCccCCCCcchh-----cCCCCCCCEEEccCCcccccc----CcccCCCCCCCEEEccCCCC
Q 040154 84 -DMPAVIGNLSSLKALVLSKTNFSSDLPAF-----IGNLPSLEILDLSGNKISGEL----PDFFGNLPSLEELDLSGNQL 153 (600)
Q Consensus 84 -~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~n~i 153 (600)
.++..+..+++|++|++++|.+....+.. ....++|++|++++|.+++.. +..+..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 45788999999999999999986533332 223567999999998887532 34455667777777777776
Q ss_pred CCcchhhcC-----CCCCCCEEEecCCCCccc----CCccccCCCCCcEEeccccccc
Q 040154 154 SGDFSVSTG-----NLTSLKRLSLESCSFLGK----LPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 154 ~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
.+.....+. ..++|++|++++|.+... ++..+..+++|++|++++|.++
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 543333332 244666666666655542 2333444455555555555443
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.4e-31 Score=260.01 Aligned_cols=249 Identities=29% Similarity=0.458 Sum_probs=206.2
Q ss_pred CCCcEEECCCCCCCC--chhhhhcCCCCCCEEEccC-CCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCE
Q 040154 21 SKLIYLDLSSNQLSG--EIPASIGNLGSLKELDLST-NELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKA 97 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~--~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 97 (600)
.++++|+++++.+++ ..|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.+.+..|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888887 7788888888888888884 8888788888888888888888888888778888888888888
Q ss_pred EEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCC-CCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCC
Q 040154 98 LVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLP-SLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCS 176 (600)
Q Consensus 98 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 176 (600)
|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ .|++|++++|.+++..+..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888877888888888888888888888877888888887 888888888888877777777776 8888888888
Q ss_pred CcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchh
Q 040154 177 FLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256 (600)
Q Consensus 177 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 256 (600)
+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8877788888888888888888888765554 677788888888888888778888888888888888888887655543
Q ss_pred HHhhcCCCCCEEEccCCc
Q 040154 257 VFLISLKNLEVLYLSSNR 274 (600)
Q Consensus 257 ~~~~~~~~L~~L~l~~n~ 274 (600)
..+++|+.+++++|+
T Consensus 288 ---~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 ---GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---TTGGGSCGGGTCSSS
T ss_pred ---ccccccChHHhcCCC
Confidence 366778888888875
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-29 Score=249.70 Aligned_cols=289 Identities=21% Similarity=0.232 Sum_probs=231.2
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
.++++++++++.++ .+|..+ .++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|+++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 37999999999998 445544 378999999999999777888999999999999999999888899999999999999
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCC--cchhhcCCCCCCCEEEecCCCCc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG--DFSVSTGNLTSLKRLSLESCSFL 178 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~~~ 178 (600)
++|.+....+. +. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+.
T Consensus 110 ~~n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99998854333 33 899999999999997777779999999999999999863 556677777 9999999999988
Q ss_pred ccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHH
Q 040154 179 GKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF 258 (600)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 258 (600)
+. |..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. ++..
T Consensus 186 ~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~-- 259 (332)
T 2ft3_A 186 GI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAG-- 259 (332)
T ss_dssp SC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTT--
T ss_pred cc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChh--
Confidence 74 43333 789999999999998888889999999999999999998888889999999999999999873 3322
Q ss_pred hhcCCCCCEEEccCCccceeeccCCCC-----CCCcccEEEecCCCCC---ccchhhhCCCCCcEEECcCCC
Q 040154 259 LISLKNLEVLYLSSNRLSVHTKATSST-----TSQKFGTVGLRSCNLT---EFPNFLKNQKNVAVLDLSSNR 322 (600)
Q Consensus 259 ~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~~L~~l~l~~~~l~---~~~~~l~~~~~L~~L~l~~n~ 322 (600)
...+++|++|++++|++...+...... ..+.++.+++++|.+. ..+.++..+++|+.+++++|.
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 347899999999999776544332221 1456777777777765 233556677777777776653
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8e-29 Score=245.71 Aligned_cols=289 Identities=22% Similarity=0.239 Sum_probs=208.9
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
.++++++++++.++. +|..+. +++++|++++|++++..+..|+++++|++|++++|.+.+..|..|+.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 478888888888873 444333 68888999998888777778888888999999888888777888888888999999
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCC--cchhhcCCCCCCCEEEecCCCCc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG--DFSVSTGNLTSLKRLSLESCSFL 178 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~~~ 178 (600)
++|.+... |..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 108 s~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 88888753 33232 688888888888887666678888888888888888764 55667778888888888888877
Q ss_pred ccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHH
Q 040154 179 GKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF 258 (600)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 258 (600)
.. |..+. ++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ++..
T Consensus 185 ~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~-- 258 (330)
T 1xku_A 185 TI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGG-- 258 (330)
T ss_dssp SC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTT--
T ss_pred cC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChh--
Confidence 54 33332 788888888888887777788888888888888888887777778888888888888888763 2221
Q ss_pred hhcCCCCCEEEccCCccceeeccCCCC-----CCCcccEEEecCCCCC---ccchhhhCCCCCcEEECcCC
Q 040154 259 LISLKNLEVLYLSSNRLSVHTKATSST-----TSQKFGTVGLRSCNLT---EFPNFLKNQKNVAVLDLSSN 321 (600)
Q Consensus 259 ~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~~L~~l~l~~~~l~---~~~~~l~~~~~L~~L~l~~n 321 (600)
...+++|++|++++|++...+...... ..+.++.+++++|.+. ..|..+..+++++.+++++|
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 236778888888888665443322211 2345566666666554 12244555555555555554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8e-29 Score=245.69 Aligned_cols=279 Identities=20% Similarity=0.248 Sum_probs=234.1
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|.+|+++++|++|++++|.+. .+|..+.
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 120 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP 120 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC
T ss_pred cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc
Confidence 35665554 68999999999999888889999999999999999999888999999999999999999987 4444443
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCcccc--ccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCC
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISG--ELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK 168 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 168 (600)
++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.... .+ .++|+
T Consensus 121 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~--~~~L~ 195 (330)
T 1xku_A 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GL--PPSLT 195 (330)
T ss_dssp --TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SC--CTTCS
T ss_pred --ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cc--cccCC
Confidence 799999999999998888889999999999999999863 667789999999999999999986433 22 28999
Q ss_pred EEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCc
Q 040154 169 RLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNH 248 (600)
Q Consensus 169 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 248 (600)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 9999999999988889999999999999999999888888999999999999999998 567778999999999999999
Q ss_pred cccccchhHHh-----hcCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCC
Q 040154 249 FSGGMELDVFL-----ISLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCN 299 (600)
Q Consensus 249 ~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~ 299 (600)
+.+. +...+. ...+.++.+++++|++......+..+ .+..++.+++++|+
T Consensus 275 i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 275 ISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcc-ChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8753 222221 13478999999999876544443344 67889999998874
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.4e-31 Score=258.03 Aligned_cols=243 Identities=31% Similarity=0.481 Sum_probs=225.8
Q ss_pred cCCcee--ecCcCCCCCCCCcEEECCC-CCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCC
Q 040154 6 LKKKTG--GIPSSLGNLSKLIYLDLSS-NQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFS 82 (600)
Q Consensus 6 ~~~~~~--~l~~~~~~l~~L~~L~Ls~-~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~ 82 (600)
..++.| .+|.+|.++++|++|++++ |.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+.
T Consensus 59 ~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 59 GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp CCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence 456667 8999999999999999995 8898889999999999999999999999899999999999999999999999
Q ss_pred CCcchhccCCCCCCEEEccCccCCCCcchhcCCCC-CCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhc
Q 040154 83 GDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLP-SLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVST 161 (600)
Q Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~ 161 (600)
+..|..++.+++|++|++++|++.+..|..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+++..+..+
T Consensus 139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence 88999999999999999999999988888899998 999999999999988999998887 9999999999998889999
Q ss_pred CCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCE
Q 040154 162 GNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSC 241 (600)
Q Consensus 162 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 241 (600)
..+++|++|++++|.+.+..+. +..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+++|+.
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~ 295 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCG
T ss_pred hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccCh
Confidence 9999999999999999876655 788999999999999999899999999999999999999999888875 78999999
Q ss_pred EEcCCCcccc
Q 040154 242 LDLSRNHFSG 251 (600)
Q Consensus 242 L~l~~n~~~~ 251 (600)
+++++|+..+
T Consensus 296 l~l~~N~~lc 305 (313)
T 1ogq_A 296 SAYANNKCLC 305 (313)
T ss_dssp GGTCSSSEEE
T ss_pred HHhcCCCCcc
Confidence 9999998543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9.7e-29 Score=245.22 Aligned_cols=278 Identities=20% Similarity=0.264 Sum_probs=232.6
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+. +++++|++++|.+++..+.+|+++++|++|++++|++++..|.+|+++++|++|++++|.+. .+|..+.
T Consensus 46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~ 122 (332)
T 2ft3_A 46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP 122 (332)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC
T ss_pred cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc
Confidence 35666554 69999999999999887889999999999999999999888999999999999999999998 4444443
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccc--cccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCC
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKIS--GELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK 168 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 168 (600)
++|++|++++|.+....+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|.+++... .+ .++|+
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~ 196 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLN 196 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCS
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCC
Confidence 89999999999999887888999999999999999986 3667778887 99999999999986433 33 27999
Q ss_pred EEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCc
Q 040154 169 RLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNH 248 (600)
Q Consensus 169 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 248 (600)
+|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 9999999999988888999999999999999999888888999999999999999998 567779999999999999999
Q ss_pred cccccchhHHhh-----cCCCCCEEEccCCccceeeccCCCC-CCCcccEEEecCCC
Q 040154 249 FSGGMELDVFLI-----SLKNLEVLYLSSNRLSVHTKATSST-TSQKFGTVGLRSCN 299 (600)
Q Consensus 249 ~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~~~ 299 (600)
+.+ ++...+.. ..+.|+.+++++|++......+..+ .++.|+.+++++|+
T Consensus 276 l~~-~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCB-CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCc-cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 875 32222221 2467999999999876444444434 78899999998774
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=9.2e-31 Score=281.64 Aligned_cols=202 Identities=19% Similarity=0.136 Sum_probs=114.6
Q ss_pred CCCCCCEEEccccCCCCCcchhccC-CCC-CCEEEccCccC-CC-CcchhcCCCCCCCEEEccCCcccccc----CcccC
Q 040154 67 NLSSLEKLDLSLNVFSGDMPAVIGN-LSS-LKALVLSKTNF-SS-DLPAFIGNLPSLEILDLSGNKISGEL----PDFFG 138 (600)
Q Consensus 67 ~l~~L~~L~l~~n~~~~~~~~~~~~-l~~-L~~L~L~~n~~-~~-~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~ 138 (600)
.+++|++|++++|.++...+..+.. +++ |++|++++|.. .. ..+....++++|++|++++|.+++.. +..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5666777777766665444444444 333 77777766652 11 12223345667777777777665432 22334
Q ss_pred CCCCCCEEEccCCCCCC----cchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccc---cCCCccccC
Q 040154 139 NLPSLEELDLSGNQLSG----DFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS---GNLPSTIGN 211 (600)
Q Consensus 139 ~l~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~ 211 (600)
.+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+ .+..+..+++|++|+++..... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 56677777777776652 223334556777777777766554 3455666677777777653221 122344556
Q ss_pred CCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEcc
Q 040154 212 LRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLS 271 (600)
Q Consensus 212 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 271 (600)
+++|+.++++++.. ...+..+..+++|++|++++|.+.. .........+++|++|+++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCH-HHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCH-HHHHHHHHhCcCCCEEecc
Confidence 66777777766432 2445556667777777777776442 1222223466777777776
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.9e-28 Score=240.37 Aligned_cols=253 Identities=28% Similarity=0.324 Sum_probs=202.2
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCC--CccccCCCCCCCEEEccccCCCCCcchh
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGR--LPSSIGNLSSLEKLDLSLNVFSGDMPAV 88 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 88 (600)
.++|..+. ++|++|++++|.++...+..|+++++|++|++++|.++.. .+..+..+++|++|++++|.+. .++..
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~ 96 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhh
Confidence 34555443 5888999999988866666788899999999999888732 2566777888999999988876 45666
Q ss_pred ccCCCCCCEEEccCccCCCCcc-hhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCC-cchhhcCCCCC
Q 040154 89 IGNLSSLKALVLSKTNFSSDLP-AFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSG-DFSVSTGNLTS 166 (600)
Q Consensus 89 ~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~ 166 (600)
+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 8888999999999988876554 578888899999999988887777788888899999999888876 56777888889
Q ss_pred CCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCC-CCCEEEcC
Q 040154 167 LKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLT-QLSCLDLS 245 (600)
Q Consensus 167 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~ 245 (600)
|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 99999999988888778888888999999999988877777788888899999999988888888888874 88999999
Q ss_pred CCccccccchhHHhhcCCCCC
Q 040154 246 RNHFSGGMELDVFLISLKNLE 266 (600)
Q Consensus 246 ~n~~~~~~~~~~~~~~~~~L~ 266 (600)
+|++.++.....+...+...+
T Consensus 257 ~N~~~~~c~~~~~~~~l~~~~ 277 (306)
T 2z66_A 257 QNDFACTCEHQSFLQWIKDQR 277 (306)
T ss_dssp TCCEECSGGGHHHHHHHHHTG
T ss_pred CCCeecccChHHHHHHHHhhh
Confidence 998887666555543333333
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.8e-28 Score=232.58 Aligned_cols=233 Identities=24% Similarity=0.213 Sum_probs=206.8
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCc
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKT 103 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 103 (600)
++++.+++.++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 688999988884 44433 478999999999999777788999999999999999998777888999999999999999
Q ss_pred c-CCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCC
Q 040154 104 N-FSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLP 182 (600)
Q Consensus 104 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 182 (600)
. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 777768889999999999999999998878889999999999999999998888888999999999999999988777
Q ss_pred ccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHh
Q 040154 183 PSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFL 259 (600)
Q Consensus 183 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 259 (600)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.++.....+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~ 247 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH
Confidence 77999999999999999999888899999999999999999999888788999999999999999998777665443
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-27 Score=246.78 Aligned_cols=234 Identities=24% Similarity=0.214 Sum_probs=138.0
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
+++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35666666666666555556666666666666666666555556666666666666666665555555666666666666
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCC-ccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGN-KISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 179 (600)
++|.+....+..|.++++|+.|++++| .+....+..|..+++|++|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 666665544455666666666666653 23322333455666666666666665543 234555666666666666665
Q ss_pred cCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchh
Q 040154 180 KLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256 (600)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 256 (600)
..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.++....
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 55555666666666666666666555555666666666666666666555555555666666666666665544443
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=244.98 Aligned_cols=235 Identities=24% Similarity=0.206 Sum_probs=131.6
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
+++++|+|++|.++...+..|.++++|++|+|++|.+++..+.+|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 35555666666555555555555666666666666655555555555666666666666555444445555566666666
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCc-cccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNK-ISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 179 (600)
++|.+....+..|.++++|++|++++|. +....+..|.++++|++|++++|.++... .+..+++|++|++++|.+.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 6665555444555555666666665532 22222334555556666666665555321 24555556666666665555
Q ss_pred cCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhH
Q 040154 180 KLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDV 257 (600)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 257 (600)
..+..+..+++|+.|++++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|++.++....+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 555555555666666666665555555555555566666666665555555555555556666666665555444433
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.4e-27 Score=232.45 Aligned_cols=262 Identities=21% Similarity=0.230 Sum_probs=190.7
Q ss_pred cEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEcc
Q 040154 192 QWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLS 271 (600)
Q Consensus 192 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 271 (600)
+.++.+++.++. +|..+ .+++++|++++|.+....+..|..+++|+.|++++|.+............+++|++|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 355666666553 33322 246777777777777555555677777777777777665321111111245566666666
Q ss_pred CCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCC
Q 040154 272 SNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQ 351 (600)
Q Consensus 272 ~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 351 (600)
+|.+ ..+|..+..+++|+.|++++|.+++..+
T Consensus 87 ~n~i-------------------------~~l~~~~~~l~~L~~L~l~~n~l~~~~~----------------------- 118 (306)
T 2z66_A 87 FNGV-------------------------ITMSSNFLGLEQLEHLDFQHSNLKQMSE----------------------- 118 (306)
T ss_dssp SCSE-------------------------EEEEEEEETCTTCCEEECTTSEEESSTT-----------------------
T ss_pred CCcc-------------------------ccChhhcCCCCCCCEEECCCCccccccc-----------------------
Confidence 5533 2233334555666666666655432110
Q ss_pred CCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhcccc
Q 040154 352 YPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNH 431 (600)
Q Consensus 352 ~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~ 431 (600)
...+..+++|++|++++|.+.+..+..+..++.
T Consensus 119 ----------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~- 151 (306)
T 2z66_A 119 ----------------------------------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS- 151 (306)
T ss_dssp ----------------------------------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-
T ss_pred ----------------------------------------------chhhhhccCCCEEECCCCcCCccchhhcccCcC-
Confidence 012456788899999999988888888888885
Q ss_pred CceEECCCCcccc-ccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEcc
Q 040154 432 LSILNLQHNKFFG-TIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQ 510 (600)
Q Consensus 432 L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 510 (600)
|++|++++|++.+ ..|..+..+++|++|++++|.+++..|..|.++++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 9999999999986 678889999999999999999998888999999999999999999998888889999999999999
Q ss_pred CccceeecCCCCCCCCC-CcceEEEccCCcCcccCChhhHhccc
Q 040154 511 SNKFHGIIREPGTDCGF-PKLRIIDISSNRFIGKLPSKYFQCWN 553 (600)
Q Consensus 511 ~n~l~~~~~~~~~~~~~-~~L~~L~l~~N~~~~~~~~~~~~~~~ 553 (600)
+|++.+..+..+ ..+ ++|+.|++++|++.|.|+..+|..|-
T Consensus 232 ~N~l~~~~~~~~--~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 232 LNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp TSCCCBCSSSSC--CCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred CCCCcccCHHHH--HhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 999998866554 556 48999999999999999877777764
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.4e-30 Score=275.65 Aligned_cols=378 Identities=15% Similarity=0.066 Sum_probs=209.9
Q ss_pred cCCCCCCEEEccCccCCCCcchhcCC-CCC-CCEEEccCCcc-cc-ccCcccCCCCCCCEEEccCCCCCCc----chhhc
Q 040154 90 GNLSSLKALVLSKTNFSSDLPAFIGN-LPS-LEILDLSGNKI-SG-ELPDFFGNLPSLEELDLSGNQLSGD----FSVST 161 (600)
Q Consensus 90 ~~l~~L~~L~L~~n~~~~~~~~~~~~-~~~-L~~L~l~~~~~-~~-~~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~ 161 (600)
..+++|++|+|++|.+.+..+..+.. ++. |++|++++|.. +. ..+.....+++|++|++++|.+++. .+..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 36889999999998877655555554 444 99999988862 21 1222234788899999998877654 33345
Q ss_pred CCCCCCCEEEecCCCCccc----CCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCC---CCCchhcc
Q 040154 162 GNLTSLKRLSLESCSFLGK----LPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS---GPIPSSLR 234 (600)
Q Consensus 162 ~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~ 234 (600)
..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ .+..+..+++|+.|+++..... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 6778889999988887632 33445677888888888888775 4567777888888888753322 22334566
Q ss_pred CCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCC-ccchhhhCCCCC
Q 040154 235 NLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLT-EFPNFLKNQKNV 313 (600)
Q Consensus 235 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~l~~~~~L 313 (600)
.+++|+.|+++++... ........+++|++|++++|.+...........+++|+.|+++.+... .++.....+++|
T Consensus 268 ~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN---EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTTCCEEEETTCCTT---TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred ccccccccCccccchh---HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 7778888888775322 222233466777788887775322221111124566666666622111 333344555666
Q ss_pred cEEECcC-----------CCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEEEcccCcccccCCCCCCC
Q 040154 314 AVLDLSS-----------NRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPR 382 (600)
Q Consensus 314 ~~L~l~~-----------n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~ 382 (600)
+.|++++ +.+++.....+. ...++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---------------------------------------------~~~~~ 379 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALA---------------------------------------------QGCQE 379 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHH---------------------------------------------HHCTT
T ss_pred CEEEeecCccccccccccCccCHHHHHHHH---------------------------------------------hhCcc
Confidence 6666662 122110000000 00234
Q ss_pred CcEEEcccCcccccChhhhhc-cCCCCeeeCC----CCccccc-----CChhhhhccccCceEECCCCc--cccccCccc
Q 040154 383 TRNYLISNNSLIGGIAPWICN-LNFLEGLDLS----RNNLSGL-----LPHCLGNISNHLSILNLQHNK--FFGTIPQTF 450 (600)
Q Consensus 383 l~~l~l~~n~~~~~~~~~~~~-~~~L~~L~L~----~n~i~~~-----~~~~~~~~~~~L~~L~L~~n~--i~~~~~~~~ 450 (600)
++.|+++.+.+++.....+.. +++|+.|+++ .|.+++. ++..+..++. |++|++++|. +++..+..+
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~-L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK-LRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT-CCEEEEECCGGGCCHHHHHHH
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC-CCEEEEecCCCCccHHHHHHH
Confidence 444444444444444444433 5666666664 3445432 2222334443 6666665432 333322222
Q ss_pred -cCCCCccEEEccCCccccc-cCcchhcCCCCcEEeCCCCccccc-CCcccCCCCCCCEEEccCccceee
Q 040154 451 -LGVEWLRMIDLSDNLLQGR-IPRSLVNCSNLEFLDLGNNQISDT-FPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 451 -~~l~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
..+++|+.|++++|.+++. .+..+.++++|++|+|++|.+++. .+..+..+++|+.|+|++|++++.
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 2355566666666665542 233345556666666666665433 222233456666666666665543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=238.35 Aligned_cols=284 Identities=19% Similarity=0.174 Sum_probs=224.7
Q ss_pred CcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCC
Q 040154 14 PSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLS 93 (600)
Q Consensus 14 ~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 93 (600)
+.+-..|+...+.+++++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|++++
T Consensus 24 ~~~~~~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 24 NQASLSCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp ---CCEECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CccCCCCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 3455566777789999999984 455444 5899999999999976666899999999999999999877788899999
Q ss_pred CCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccC-cccCCCCCCCEEEccCC-CCCCcchhhcCCCCCCCEEE
Q 040154 94 SLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELP-DFFGNLPSLEELDLSGN-QLSGDFSVSTGNLTSLKRLS 171 (600)
Q Consensus 94 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~ 171 (600)
+|++|++++|.+.+..+..++++++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..+.++++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 99999999999988777778999999999999999885544 47889999999999998 46666677888999999999
Q ss_pred ecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhc---cCCCCCCEEEcCCCc
Q 040154 172 LESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSL---RNLTQLSCLDLSRNH 248 (600)
Q Consensus 172 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~ 248 (600)
+++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+ ...+.++.++++++.
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 99999998888889999999999999999875444445568899999999999887654433 345778889998888
Q ss_pred ccccc--chhHHhhcCCCCCEEEccCCccceeeccCCC-CCCCcccEEEecCCCCCc
Q 040154 249 FSGGM--ELDVFLISLKNLEVLYLSSNRLSVHTKATSS-TTSQKFGTVGLRSCNLTE 302 (600)
Q Consensus 249 ~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~ 302 (600)
+.+.. ........+++|++|++++|.+... .... ..+++|+.+++++|++..
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i--~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSV--PDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCcc--CHHHHhcCCCCCEEEeeCCCccC
Confidence 76421 1112234789999999999976622 2222 367899999999998883
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.5e-27 Score=231.27 Aligned_cols=215 Identities=27% Similarity=0.286 Sum_probs=197.5
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccC-CCCCcchhc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNV-FSGDMPAVI 89 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~ 89 (600)
..+|..+ .++|++|++++|.+++..+..|+.+++|++|++++|.+++..+.++.++++|++|++++|. +....+..+
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 3455544 4699999999999998888889999999999999999998888999999999999999997 777778899
Q ss_pred cCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCE
Q 040154 90 GNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKR 169 (600)
Q Consensus 90 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 169 (600)
..+++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 99999999999999999888889999999999999999999777778999999999999999999877778999999999
Q ss_pred EEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCC
Q 040154 170 LSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227 (600)
Q Consensus 170 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 227 (600)
|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 9999999999888999999999999999999998777789999999999999998874
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.3e-27 Score=231.44 Aligned_cols=226 Identities=27% Similarity=0.389 Sum_probs=184.8
Q ss_pred CCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEE
Q 040154 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV 99 (600)
Q Consensus 20 l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 99 (600)
.+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478889999999888 56667888899999999999988 78888888999999999999887 6677888899999999
Q ss_pred ccCccCCCCcchhcCC---------CCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEE
Q 040154 100 LSKTNFSSDLPAFIGN---------LPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRL 170 (600)
Q Consensus 100 L~~n~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 170 (600)
+++|++.+..|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+++. +..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEE
Confidence 9988877766665543 888888888888887 6677788888888888888888754 4457788888888
Q ss_pred EecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccc
Q 040154 171 SLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250 (600)
Q Consensus 171 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 250 (600)
++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++++.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888888888887778878888888888888888888888888888888888888766543
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.2e-27 Score=233.43 Aligned_cols=285 Identities=18% Similarity=0.158 Sum_probs=226.6
Q ss_pred hcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCC
Q 040154 41 IGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLE 120 (600)
Q Consensus 41 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 120 (600)
-..|+.....+++++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 344677778999999998 6676655 4899999999999877777899999999999999999987788899999999
Q ss_pred EEEccCCccccccCcccCCCCCCCEEEccCCCCCCcch-hhcCCCCCCCEEEecCC-CCcccCCccccCCCCCcEEeccc
Q 040154 121 ILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFS-VSTGNLTSLKRLSLESC-SFLGKLPPSVGNLTQLQWLGLAS 198 (600)
Q Consensus 121 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~ 198 (600)
+|++++|.+++..+..+.++++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999997666668999999999999999987655 57889999999999999 46666677899999999999999
Q ss_pred cccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchh-HHhhcCCCCCEEEccCCccce
Q 040154 199 NNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD-VFLISLKNLEVLYLSSNRLSV 277 (600)
Q Consensus 199 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~ 277 (600)
|.+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..... ......+.++.++++++.+..
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 9999888899999999999999999987655555667899999999999987532211 112246678888888875432
Q ss_pred eec--cCCCC-CCCcccEEEecCCCCCccchh-hhCCCCCcEEECcCCCCCCCCC
Q 040154 278 HTK--ATSST-TSQKFGTVGLRSCNLTEFPNF-LKNQKNVAVLDLSSNRIHGKIP 328 (600)
Q Consensus 278 ~~~--~~~~~-~~~~L~~l~l~~~~l~~~~~~-l~~~~~L~~L~l~~n~l~~~~~ 328 (600)
... .+... .+++|+.|++++|+++.+|.. +..+++|+.|++++|.+.+..+
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 211 11111 566777777777777777755 4677777777777777776554
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.3e-29 Score=269.74 Aligned_cols=245 Identities=22% Similarity=0.266 Sum_probs=137.7
Q ss_pred EEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCC---CCc------------cccCCCCCCCEEEccccCCCCCcchhc
Q 040154 25 YLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSG---RLP------------SSIGNLSSLEKLDLSLNVFSGDMPAVI 89 (600)
Q Consensus 25 ~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~---~~~------------~~l~~l~~L~~L~l~~n~~~~~~~~~~ 89 (600)
.++++.+... .....+.++++|++|+++++.... ..| .....+++|++|++++|.+++..+..+
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 4555544322 334556667777777777764211 111 112356778888888777765555555
Q ss_pred c-CCCCCCEEEccCcc-CCCC-cchhcCCCCCCCEEEccCCccccccCcc----cCCCCCCCEEEccCCC--CCCc-chh
Q 040154 90 G-NLSSLKALVLSKTN-FSSD-LPAFIGNLPSLEILDLSGNKISGELPDF----FGNLPSLEELDLSGNQ--LSGD-FSV 159 (600)
Q Consensus 90 ~-~l~~L~~L~L~~n~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~n~--i~~~-~~~ 159 (600)
. .+++|++|++++|. +... .+....++++|++|++++|.+++..+.. ...+++|++|++++|. +... ...
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 4 57788888887773 3321 3344456778888888887766433332 2366778888887775 2211 112
Q ss_pred hcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccc-------cccCCCccccCCCCCcEE-EecCCcCCCCCch
Q 040154 160 STGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNN-------FSGNLPSTIGNLRSLETL-DISSCNFSGPIPS 231 (600)
Q Consensus 160 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~ 231 (600)
....+++|++|++++|...+.++..+..+++|++|+++.+. +.+ .+..+.++++|+.+ .+.+... ...+.
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~ 283 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA 283 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG
T ss_pred HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH
Confidence 22346778888877774333355556677777777755442 222 22345666777776 3332211 12333
Q ss_pred hccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCC
Q 040154 232 SLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSN 273 (600)
Q Consensus 232 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 273 (600)
.+..+++|+.|++++|.+.. .........+++|++|++++|
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCH-HHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHhhCCCCEEEccCCCCCH-HHHHHHHhcCCCcCEEeCcCc
Confidence 33456677777777776442 222233345666666666665
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.7e-26 Score=234.91 Aligned_cols=248 Identities=25% Similarity=0.286 Sum_probs=215.0
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
..+.++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678999998888 4555444 789999999999998888899999999999999999988888899999999999999
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCC-CCCCcchhhcCCCCCCCEEEecCCCCccc
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGN-QLSGDFSVSTGNLTSLKRLSLESCSFLGK 180 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 180 (600)
+|+++...+..|..+++|++|++++|.+....+..|..+++|++|++++| .+....+..|.++++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99999877788999999999999999999777778999999999999984 55555556788999999999999998865
Q ss_pred CCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhh
Q 040154 181 LPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLI 260 (600)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 260 (600)
| .+..+++|++|++++|++++..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.. ++...+ .
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-~ 276 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLF-T 276 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-CCTTTT-S
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-cChhHh-c
Confidence 3 58889999999999999998888899999999999999999998888899999999999999999874 332323 3
Q ss_pred cCCCCCEEEccCCccc
Q 040154 261 SLKNLEVLYLSSNRLS 276 (600)
Q Consensus 261 ~~~~L~~L~l~~n~~~ 276 (600)
.+++|+.|++++|++.
T Consensus 277 ~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCTTCCEEECCSSCEE
T ss_pred cccCCCEEEcCCCCcc
Confidence 7889999999999764
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.2e-26 Score=236.16 Aligned_cols=248 Identities=26% Similarity=0.286 Sum_probs=212.5
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4578999998888 4454443 689999999999998888899999999999999999988888899999999999999
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccC-CCCCCcchhhcCCCCCCCEEEecCCCCccc
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSG-NQLSGDFSVSTGNLTSLKRLSLESCSFLGK 180 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 180 (600)
+|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++ +.+....+..+.++++|++|++++|.+.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999988788899999999999999999877777899999999999998 455555556788999999999999998865
Q ss_pred CCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhh
Q 040154 181 LPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLI 260 (600)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 260 (600)
..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+ ++...+ .
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-~ 287 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLF-T 287 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTSS-T
T ss_pred --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-cChHHh-c
Confidence 357888999999999999998888899999999999999999998888889999999999999998874 332323 3
Q ss_pred cCCCCCEEEccCCccc
Q 040154 261 SLKNLEVLYLSSNRLS 276 (600)
Q Consensus 261 ~~~~L~~L~l~~n~~~ 276 (600)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 6788999999998654
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.7e-26 Score=223.55 Aligned_cols=211 Identities=31% Similarity=0.422 Sum_probs=196.2
Q ss_pred ecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccC
Q 040154 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGN 91 (600)
Q Consensus 12 ~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 91 (600)
.+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.+.+..|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 78999999999999999999999 78888999999999999999999 78989999999999999999888788876654
Q ss_pred ---------CCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcC
Q 040154 92 ---------LSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG 162 (600)
Q Consensus 92 ---------l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 162 (600)
+++|++|++++|.+. .+|..+.++++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+..+.
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 999999999999998 677789999999999999999995 566799999999999999999999999999
Q ss_pred CCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCC
Q 040154 163 NLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFS 226 (600)
Q Consensus 163 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 226 (600)
.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++++.+++..+.+.
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877654
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.1e-28 Score=258.85 Aligned_cols=266 Identities=17% Similarity=0.170 Sum_probs=146.9
Q ss_pred CEEEccCCCCCCCCccccCCCCCCCEEEccccCCCC---Cc------------chhccCCCCCCEEEccCccCCCCcchh
Q 040154 48 KELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSG---DM------------PAVIGNLSSLKALVLSKTNFSSDLPAF 112 (600)
Q Consensus 48 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~---~~------------~~~~~~l~~L~~L~L~~n~~~~~~~~~ 112 (600)
+.++++++... .....+..+++|++|+++++.... .. +.....+++|++|++++|.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 46677665433 333456778899999998874211 11 112345778888888888877655444
Q ss_pred cC-CCCCCCEEEccCC-ccccc-cCcccCCCCCCCEEEccCCCCCCcchhhc----CCCCCCCEEEecCCC--Cccc-CC
Q 040154 113 IG-NLPSLEILDLSGN-KISGE-LPDFFGNLPSLEELDLSGNQLSGDFSVST----GNLTSLKRLSLESCS--FLGK-LP 182 (600)
Q Consensus 113 ~~-~~~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~----~~~~~L~~L~l~~n~--~~~~-~~ 182 (600)
+. .+++|++|++++| .++.. .+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|. +... ..
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 5788888888888 44322 33334467888888888887665443333 356678888888775 2111 11
Q ss_pred ccccCCCCCcEEecccc-ccccCCCccccCCCCCcEEEecCCc-------CCCCCchhccCCCCCCEE-EcCCCcccccc
Q 040154 183 PSVGNLTQLQWLGLASN-NFSGNLPSTIGNLRSLETLDISSCN-------FSGPIPSSLRNLTQLSCL-DLSRNHFSGGM 253 (600)
Q Consensus 183 ~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~l~~n~~~~~~ 253 (600)
.....+++|++|++++| .+.+ .+..+..+++|+.|+++.+. +.+ .+..+.++++|+.+ .+.+... .
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~---~ 279 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP---A 279 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG---G
T ss_pred HHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch---h
Confidence 12234577777777777 3332 45556667777777755443 111 22355666777766 3332211 1
Q ss_pred chhHHhhcCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCC--ccchhhhCCCCCcEEECcC
Q 040154 254 ELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLT--EFPNFLKNQKNVAVLDLSS 320 (600)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~l~~~~~L~~L~l~~ 320 (600)
........+++|++|++++|.+...........+++|+.|++++| +. .++.....+++|+.|++++
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 112222255667777777664322111111114455555555555 22 2222233455555555533
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=226.98 Aligned_cols=243 Identities=22% Similarity=0.172 Sum_probs=174.6
Q ss_pred CCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCC
Q 040154 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 95 (600)
.+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L 101 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence 45566788888888888887777788888888888888888875443 778888888888888775322 34788
Q ss_pred CEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhc-CCCCCCCEEEecC
Q 040154 96 KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVST-GNLTSLKRLSLES 174 (600)
Q Consensus 96 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~ 174 (600)
++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 8888888887765433 35678888888888877666677778888888888888877665555 3677888888888
Q ss_pred CCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccc
Q 040154 175 CSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGME 254 (600)
Q Consensus 175 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 254 (600)
|.+.+. .....+++|++|++++|++++.. ..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|++.+...
T Consensus 179 N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 179 NFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SCCCEE--ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CcCccc--ccccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCH
Confidence 887765 22334778888888888887543 347777888888888888774 45567777888888888888774333
Q ss_pred hhHHhhcCCCCCEEEccCC
Q 040154 255 LDVFLISLKNLEVLYLSSN 273 (600)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~n 273 (600)
.. +...++.|+.++++++
T Consensus 255 ~~-~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 255 RD-FFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HH-HHHTCHHHHHHHHHHH
T ss_pred HH-HHhccccceEEECCCc
Confidence 23 3336666676666644
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.5e-24 Score=206.51 Aligned_cols=226 Identities=23% Similarity=0.194 Sum_probs=153.1
Q ss_pred EEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCcc
Q 040154 25 YLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTN 104 (600)
Q Consensus 25 ~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 104 (600)
+++.++..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444444444 2333332 456666666666665555566666666666666666665555566666667777777666
Q ss_pred CCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCc-chhhcCCCCCCCEEEecCCCCcccCCc
Q 040154 105 FSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD-FSVSTGNLTSLKRLSLESCSFLGKLPP 183 (600)
Q Consensus 105 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~ 183 (600)
+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 6665556666677777777777776655555566777777777777777653 366677777777777777777766666
Q ss_pred cccCCCCCc----EEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccc
Q 040154 184 SVGNLTQLQ----WLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGME 254 (600)
Q Consensus 184 ~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 254 (600)
.+..++.|+ +|++++|.+++..+..+.. .+|+.|++++|.+++..+..|..+++|+.|++++|++.++.+
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666666665 7888888887655544443 478888998888887777777888899999999998887554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.1e-26 Score=222.66 Aligned_cols=248 Identities=23% Similarity=0.301 Sum_probs=185.8
Q ss_pred CCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCC-CCCccccC-------CCCCCCEEEccccCCCCCcchh
Q 040154 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELS-GRLPSSIG-------NLSSLEKLDLSLNVFSGDMPAV 88 (600)
Q Consensus 17 ~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~ 88 (600)
++..++|++|++++|.+ ..|..+... |++|++++|.++ ..++..+. ++++|++|++++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566788888888888 445545443 788888888874 34555454 6888888888888888777776
Q ss_pred c--cCCCCCCEEEccCccCCCCcchhcCCC-----CCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCc--chh
Q 040154 89 I--GNLSSLKALVLSKTNFSSDLPAFIGNL-----PSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD--FSV 159 (600)
Q Consensus 89 ~--~~l~~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~ 159 (600)
+ +.+++|++|++++|++.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7888888888888888876 6666655 8888888888888877778888888888888888887654 223
Q ss_pred hc--CCCCCCCEEEecCCCCccc---CCccccCCCCCcEEeccccccccCCC-ccccCCCCCcEEEecCCcCCCCCchhc
Q 040154 160 ST--GNLTSLKRLSLESCSFLGK---LPPSVGNLTQLQWLGLASNNFSGNLP-STIGNLRSLETLDISSCNFSGPIPSSL 233 (600)
Q Consensus 160 ~~--~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~ 233 (600)
.+ ..+++|++|++++|.+.+. ....+..+++|++|++++|++++..+ ..+..+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 7788888999988888732 22334577888899999888887653 45566788899999988888 445555
Q ss_pred cCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccc
Q 040154 234 RNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276 (600)
Q Consensus 234 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 276 (600)
. ++|++|++++|++.+. +. ...+++|++|++++|++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~---~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS---PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC---TTTSCEEEEEECTTCTTT
T ss_pred c--CCceEEECCCCCCCCC-hh---HhhCCCCCEEeccCCCCC
Confidence 4 7888899998888764 22 337788888999888764
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-25 Score=220.81 Aligned_cols=236 Identities=19% Similarity=0.170 Sum_probs=174.2
Q ss_pred CCcccEEEecCCCCCccc-hhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEE
Q 040154 287 SQKFGTVGLRSCNLTEFP-NFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSL 365 (600)
Q Consensus 287 ~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l 365 (600)
+++|+.|++++|.+..++ ..+..+++|+.|++++|.+++..+ +...++|+. +
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~--------------------------L 85 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRT--------------------------L 85 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCE--------------------------E
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCE--------------------------E
Confidence 445666666666666443 455566666666666666554332 222233444 4
Q ss_pred EcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccc
Q 040154 366 DFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGT 445 (600)
Q Consensus 366 ~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 445 (600)
++++|.+++..+ .++++.|++++|.+.+..+. .+++|++|++++|.+++..+..+..++. |++|++++|++++.
T Consensus 86 ~Ls~n~l~~l~~--~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 86 DLNNNYVQELLV--GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTV 159 (317)
T ss_dssp ECCSSEEEEEEE--CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEE
T ss_pred ECcCCccccccC--CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCcc
Confidence 555554444332 26778888888887766543 3678999999999999877777877875 99999999999887
Q ss_pred cCccc-cCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCC
Q 040154 446 IPQTF-LGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTD 524 (600)
Q Consensus 446 ~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 524 (600)
.+..+ ..+++|++|++++|.+++..+ ...+++|++|+|++|+++++.+ .+..+++|+.|++++|+++++. .. +
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~-~~--~ 233 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KA--L 233 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEEC-TT--C
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchh-hH--h
Confidence 77766 478999999999999986633 3458999999999999997655 4888999999999999999773 33 3
Q ss_pred CCCCcceEEEccCCcCcccCChhhHhccccceeeccC
Q 040154 525 CGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNTS 561 (600)
Q Consensus 525 ~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~~~ 561 (600)
..+++|+.|++++|++.|.+...++..++.++.+++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 6789999999999999977777889999888888765
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.1e-24 Score=206.89 Aligned_cols=214 Identities=29% Similarity=0.292 Sum_probs=189.3
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.++.++++|++|++++|.+.+..+..+.
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 34666554 5899999999999987777999999999999999999977778899999999999999999988888999
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccc-cCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCC-
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGE-LPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLK- 168 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~- 168 (600)
++++|++|++++|.+....+..+.++++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 999999999999999987777799999999999999999864 588899999999999999999987777776666666
Q ss_pred ---EEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCC
Q 040154 169 ---RLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSG 227 (600)
Q Consensus 169 ---~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 227 (600)
+|++++|.+.+..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 9999999998776655544 589999999999998777778999999999999999874
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.6e-26 Score=225.29 Aligned_cols=202 Identities=26% Similarity=0.332 Sum_probs=89.4
Q ss_pred CCCCCCEEEccCCCCCCCCcccc--CCCCCCCEEEccccCCCCCcchhccCC-----CCCCEEEccCccCCCCcchhcCC
Q 040154 43 NLGSLKELDLSTNELSGRLPSSI--GNLSSLEKLDLSLNVFSGDMPAVIGNL-----SSLKALVLSKTNFSSDLPAFIGN 115 (600)
Q Consensus 43 ~l~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~ 115 (600)
++++|++|++++|++++..|..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|++.+..+..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 34455555555555444444433 4444555555555544433 3333333 44555555555544444444444
Q ss_pred CCCCCEEEccCCccccc--cCccc--CCCCCCCEEEccCCCCCCc---chhhcCCCCCCCEEEecCCCCcccCC-ccccC
Q 040154 116 LPSLEILDLSGNKISGE--LPDFF--GNLPSLEELDLSGNQLSGD---FSVSTGNLTSLKRLSLESCSFLGKLP-PSVGN 187 (600)
Q Consensus 116 ~~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~ 187 (600)
+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 55555555555443322 11111 4444555555555544421 11222344445555555554444332 22333
Q ss_pred CCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccc
Q 040154 188 LTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250 (600)
Q Consensus 188 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 250 (600)
+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++.
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 444555555555444 2333332 4445555555544433 22 444444555555554443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-25 Score=231.95 Aligned_cols=239 Identities=23% Similarity=0.190 Sum_probs=192.4
Q ss_pred CCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCE
Q 040154 18 GNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKA 97 (600)
Q Consensus 18 ~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 97 (600)
..+++|++|+|++|.+++..|.+|+.+++|++|+|++|.+++..| ++.+++|++|++++|.+.+.. ..++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 344589999999999998888899999999999999999986554 889999999999999886433 2388999
Q ss_pred EEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcC-CCCCCCEEEecCCC
Q 040154 98 LVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTG-NLTSLKRLSLESCS 176 (600)
Q Consensus 98 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~ 176 (600)
|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999998876554 457899999999999988788888899999999999999887777775 78999999999999
Q ss_pred CcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchh
Q 040154 177 FLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELD 256 (600)
Q Consensus 177 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 256 (600)
+.+.. ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.+.....
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 88762 34468899999999999986544 48888999999999999885 5666888899999999999887433222
Q ss_pred HHhhcCCCCCEEEcc
Q 040154 257 VFLISLKNLEVLYLS 271 (600)
Q Consensus 257 ~~~~~~~~L~~L~l~ 271 (600)
+...++.|+.+++.
T Consensus 257 -~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 -FFSKNQRVQTVAKQ 270 (487)
T ss_dssp -HHTTCHHHHHHHHH
T ss_pred -HHHhCCCCcEEecc
Confidence 22355555555554
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.7e-23 Score=217.87 Aligned_cols=265 Identities=21% Similarity=0.242 Sum_probs=217.1
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
.++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 36899999999999 5565555 89999999999998 5554 57899999999999874 444 7899999999
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCccc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK 180 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 180 (600)
++|.+..... .+++|+.|++++|.++. +|.. +++|++|++++|.+++... .+++|+.|++++|.+.+.
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC
Confidence 9999987433 57899999999999985 4442 4899999999999986432 457899999999999874
Q ss_pred CCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhh
Q 040154 181 LPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLI 260 (600)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 260 (600)
| ..+++|+.|++++|.+++. |. .+++|+.|++++|.++... . .+++|+.|++++|.+.+ ++ .
T Consensus 177 -~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~-lp-----~ 238 (622)
T 3g06_A 177 -P---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTS-LP-----V 238 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSC-CC-----C
T ss_pred -c---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCc-CC-----C
Confidence 3 4578999999999999853 33 3478999999999998543 2 35889999999999875 33 3
Q ss_pred cCCCCCEEEccCCccceeeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhH
Q 040154 261 SLKNLEVLYLSSNRLSVHTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWL 331 (600)
Q Consensus 261 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 331 (600)
.+++|+.|++++|.+..... .+++|+.|++++|.+..+|..+..+++|+.|++++|.+++..+..+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 67899999999997763322 5789999999999999999999999999999999999987665544
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.6e-23 Score=198.48 Aligned_cols=205 Identities=23% Similarity=0.255 Sum_probs=116.8
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
+.++++++++.++. +|..+. +++++|++++|++++..+.+|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 35566666666653 333222 455666666666654444455555566666665555554444444555555555555
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccC
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
+|.+....+..+.++++|++|++++|.+ ++..+..+..+++|++|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQL------------------------KSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCcc------------------------CeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 5555544444444445555555555544 4444444445555555555555555444
Q ss_pred CccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCcccccc
Q 040154 182 PPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGM 253 (600)
Q Consensus 182 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 253 (600)
+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.++.
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 444556666666666666666555555666677777777777776665566677777777777777776543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3e-23 Score=199.00 Aligned_cols=189 Identities=29% Similarity=0.311 Sum_probs=161.7
Q ss_pred ecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccC
Q 040154 12 GIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGN 91 (600)
Q Consensus 12 ~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 91 (600)
++|..+. +++++|++++|.+++..+.+|+++++|++|++++|.++...+..|.++++|++|++++|.+.+..+..|..
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 107 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ 107 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc
Confidence 4666554 58999999999999888889999999999999999999777777899999999999999999888888999
Q ss_pred CCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEE
Q 040154 92 LSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLS 171 (600)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 171 (600)
+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 99999999999999988888899999999999999999877666788888999999998888877776777778888888
Q ss_pred ecCCCCcccCCccccCCCCCcEEeccccccc
Q 040154 172 LESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 172 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
+++|.+.+..+..+..+++|+.|++++|++.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 8888777665556667777777777777654
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1e-22 Score=215.95 Aligned_cols=265 Identities=22% Similarity=0.213 Sum_probs=131.4
Q ss_pred CCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEecc
Q 040154 118 SLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLA 197 (600)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 197 (600)
+++.|++++|.++ .+|..+. ++|++|++++|.++.... .+++|++|++++|.+++. |. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECc
Confidence 4677777777766 4444333 566777777766653322 345666666666665542 22 44556666666
Q ss_pred ccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccce
Q 040154 198 SNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSV 277 (600)
Q Consensus 198 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 277 (600)
+|.+++. |. .+++|+.|++++|.++.. |. .+++|+.|++++|.+.+
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-------------------------- 155 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-------------------------- 155 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC--------------------------
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC--------------------------
Confidence 6655532 22 344555555555555532 21 12445555555554432
Q ss_pred eeccCCCCCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccC
Q 040154 278 HTKATSSTTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCP 357 (600)
Q Consensus 278 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 357 (600)
.. ..+++|+.|++++|.+..+| ..+++|+.|++++|.+++.. .. ..+|+.|++++|.++.++.
T Consensus 156 l~-----~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~-~~--~~~L~~L~L~~N~l~~l~~------ 218 (622)
T 3g06_A 156 LP-----ALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLP-TL--PSELYKLWAYNNRLTSLPA------ 218 (622)
T ss_dssp CC-----CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC-CC--CTTCCEEECCSSCCSSCCC------
T ss_pred cC-----CccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCC-Cc--cchhhEEECcCCcccccCC------
Confidence 10 01234444444444444444 23455555555555554311 10 1223333333333322211
Q ss_pred CCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEEC
Q 040154 358 WGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNL 437 (600)
Q Consensus 358 ~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L 437 (600)
.+++|+.|++++|.+++ +| ..++ +|++|++
T Consensus 219 ---------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~-~L~~L~L 248 (622)
T 3g06_A 219 ---------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPS-ELKELMV 248 (622)
T ss_dssp ---------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCT-TCCEEEC
T ss_pred ---------------------------------------------CCCCCCEEEccCCccCc-CC---CCCC-cCcEEEC
Confidence 12445566666665553 23 1122 3666666
Q ss_pred CCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccC
Q 040154 438 QHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLG 499 (600)
Q Consensus 438 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~ 499 (600)
++|+++++ |. .+++|+.|+|++|.++ .+|..|.++++|++|+|++|.+++..|..+.
T Consensus 249 s~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 249 SGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 66666532 22 3455666666666666 4455566666666666666666555554443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.9e-24 Score=223.46 Aligned_cols=235 Identities=19% Similarity=0.162 Sum_probs=166.9
Q ss_pred CCcccEEEecCCCCCccc-hhhhCCCCCcEEECcCCCCCCCCChhHHhccCCceecccccccCCCCCCCccCCCCCCcEE
Q 040154 287 SQKFGTVGLRSCNLTEFP-NFLKNQKNVAVLDLSSNRIHGKIPKWLLEQNFSSLNLSHNLLTGLDQYPVVCPWGNRPFSL 365 (600)
Q Consensus 287 ~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~l 365 (600)
+++|+.|++++|.+..++ ..+..+++|+.|++++|.+++..+ +...++|+.|++++|.++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~------------------ 93 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ------------------ 93 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE------------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC------------------
Confidence 446666666666666443 456666666666666666654333 222334555555555444
Q ss_pred EcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccc
Q 040154 366 DFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGT 445 (600)
Q Consensus 366 ~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 445 (600)
+..+. ++++.|++++|.+.+..+. .+++|+.|++++|.+++..|..+..++. |++|++++|.+++.
T Consensus 94 --------~l~~~--~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 94 --------ELLVG--PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTV 159 (487)
T ss_dssp --------EEEEC--TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEE
T ss_pred --------CCCCC--CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCc
Confidence 43322 5777777777777765543 3577888888888888877777777775 88888888888887
Q ss_pred cCcccc-CCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCC
Q 040154 446 IPQTFL-GVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTD 524 (600)
Q Consensus 446 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 524 (600)
.|..+. .+++|+.|+|++|.+++..+ +..+++|++|+|++|+++++.|. +..+++|+.|+|++|.++++. .. +
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~--l 233 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KA--L 233 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TT--C
T ss_pred ChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc-hh--h
Confidence 777775 78888999999988886633 34588899999999998876554 778889999999999988763 22 3
Q ss_pred CCCCcceEEEccCCcCcccCChhhHhccccceeecc
Q 040154 525 CGFPKLRIIDISSNRFIGKLPSKYFQCWNAMQVVNT 560 (600)
Q Consensus 525 ~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l~~~~~ 560 (600)
..+++|+.|++++|++.|..+..++..++.++.+.+
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 567888999999999887666677877777776665
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.7e-23 Score=200.92 Aligned_cols=210 Identities=25% Similarity=0.264 Sum_probs=144.9
Q ss_pred CCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCC
Q 040154 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96 (600)
Q Consensus 17 ~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 96 (600)
+..+++|++|+++++.++.. ..++.+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 45566777777777777643 3466777777777777777642 3577777777777777777766666677777777
Q ss_pred EEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCC
Q 040154 97 ALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCS 176 (600)
Q Consensus 97 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 176 (600)
+|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777776666667777777777777777776655566777777777777777776666666777777777777777
Q ss_pred CcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCC
Q 040154 177 FLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLT 237 (600)
Q Consensus 177 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 237 (600)
+.+..+..+..+++|+.|++++|++.+ .+++++.+++..|.+.+.+|..+..++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 776666666777777777777776542 345666667777777666666555443
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.8e-23 Score=196.89 Aligned_cols=189 Identities=21% Similarity=0.203 Sum_probs=168.8
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF 442 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 442 (600)
+.++++++.++..+...+++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..++. |++|++++|++
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE-LGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCC
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc-CCEEECCCCcc
Confidence 56677777776666556788999999999999988889999999999999999999888888888885 99999999999
Q ss_pred ccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCC
Q 040154 443 FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPG 522 (600)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 522 (600)
++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|+++++.+..|+.+++|+.|+|++|+++++.+..+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 98888899999999999999999998888889999999999999999998888899999999999999999998855433
Q ss_pred CCCCCCcceEEEccCCcCccc-CChhhHhcccc
Q 040154 523 TDCGFPKLRIIDISSNRFIGK-LPSKYFQCWNA 554 (600)
Q Consensus 523 ~~~~~~~L~~L~l~~N~~~~~-~~~~~~~~~~~ 554 (600)
..+++|+.|++++|++.|. +...++..|..
T Consensus 176 --~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 176 --DRLGKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp --TTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred --hCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 7789999999999999998 77777877754
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.7e-22 Score=195.35 Aligned_cols=210 Identities=24% Similarity=0.261 Sum_probs=123.4
Q ss_pred CCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCC
Q 040154 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 95 (600)
.+++++++++++++++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+ .+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~----- 74 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DG----- 74 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CS-----
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CC-----
Confidence 34555566666666666552 232222 455555555555554444555555555555555555543221 13
Q ss_pred CEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCC
Q 040154 96 KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESC 175 (600)
Q Consensus 96 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 175 (600)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 75 -------------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 75 -------------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp -------------------CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred -------------------CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 4445555555555544 33444555555555555555555555555556666666666666
Q ss_pred CCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccch
Q 040154 176 SFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMEL 255 (600)
Q Consensus 176 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 255 (600)
.+.+..+..+..+++|+.|++++|+++...+..+..+++|+.|++++|++. .+|..+..+++|+.+++++|++.++...
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 666555555666677777777777776555556667777777777777777 4455566667888888888888765544
Q ss_pred h
Q 040154 256 D 256 (600)
Q Consensus 256 ~ 256 (600)
.
T Consensus 214 ~ 214 (290)
T 1p9a_G 214 L 214 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.2e-22 Score=194.50 Aligned_cols=186 Identities=27% Similarity=0.292 Sum_probs=149.2
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhcc
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIG 90 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 90 (600)
.++|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +. .+.+++|++|++++|.+. .+|..+.
T Consensus 23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~ 97 (290)
T 1p9a_G 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQ 97 (290)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTT
T ss_pred CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhc
Confidence 35676665 6899999999999988889999999999999999999854 33 388999999999999997 6677788
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEE
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRL 170 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 170 (600)
.+++|++|++++|+++...+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+.|
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 89999999999999888777788888888888888888887666677788888888888888876666666777777777
Q ss_pred EecCCCCcccCCccccCCCCCcEEeccccccc
Q 040154 171 SLESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 171 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
++++|.+.. +|..+...+.|+.+++++|++.
T Consensus 178 ~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 178 LLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 777777663 3444555566666666666654
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=9.4e-25 Score=221.31 Aligned_cols=242 Identities=19% Similarity=0.247 Sum_probs=164.4
Q ss_pred ecCcCCCCCCCCcEEECCCCCCCCchh----hhhcCCCCCCEEEccCCCCC---CCCcccc-------CCCCCCCEEEcc
Q 040154 12 GIPSSLGNLSKLIYLDLSSNQLSGEIP----ASIGNLGSLKELDLSTNELS---GRLPSSI-------GNLSSLEKLDLS 77 (600)
Q Consensus 12 ~l~~~~~~l~~L~~L~Ls~~~l~~~~~----~~~~~l~~L~~L~l~~~~i~---~~~~~~l-------~~l~~L~~L~l~ 77 (600)
.++.++..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345567778888888888888875533 34667888888888886443 3444444 677888888888
Q ss_pred ccCCCC----CcchhccCCCCCCEEEccCccCCCCcc----hhcCCC---------CCCCEEEccCCccc-cccC---cc
Q 040154 78 LNVFSG----DMPAVIGNLSSLKALVLSKTNFSSDLP----AFIGNL---------PSLEILDLSGNKIS-GELP---DF 136 (600)
Q Consensus 78 ~n~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~ 136 (600)
+|.+.. .++..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|+++ ...+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888776 356667778888888888888754322 233333 78888888888776 2233 34
Q ss_pred cCCCCCCCEEEccCCCCCCc-----chhhcCCCCCCCEEEecCCCCc----ccCCccccCCCCCcEEeccccccccC---
Q 040154 137 FGNLPSLEELDLSGNQLSGD-----FSVSTGNLTSLKRLSLESCSFL----GKLPPSVGNLTQLQWLGLASNNFSGN--- 204 (600)
Q Consensus 137 l~~l~~L~~L~l~~n~i~~~-----~~~~~~~~~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~--- 204 (600)
+..+++|++|++++|.+... .+..+..+++|++|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 56677888888888877632 2235667778888888888775 34556667777788888888777654
Q ss_pred -CCcccc--CCCCCcEEEecCCcCCC----CCchhc-cCCCCCCEEEcCCCcccccc
Q 040154 205 -LPSTIG--NLRSLETLDISSCNFSG----PIPSSL-RNLTQLSCLDLSRNHFSGGM 253 (600)
Q Consensus 205 -~~~~l~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~ 253 (600)
++..+. .+++|+.|++++|.+.+ ..+..+ .++++|+.|++++|.+.+..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 334442 36777777777777775 245545 45677777777777776544
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4e-23 Score=198.31 Aligned_cols=217 Identities=21% Similarity=0.235 Sum_probs=148.7
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
.+..+++.++.+.+. .....+++|++|++++|.++. ++ .+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 445556666666544 335567888888888888773 33 477788888888888877643 367778888888888
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccC
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
+|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 88877766666777788888888888777666666777777777777777777666666666777777777777766665
Q ss_pred CccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCcccc
Q 040154 182 PPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSG 251 (600)
Q Consensus 182 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 251 (600)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+ .++.++.+++..|.+.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 5556666677777777776666555556666666666666665542 23445555555555544
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.4e-22 Score=190.63 Aligned_cols=196 Identities=19% Similarity=0.216 Sum_probs=114.8
Q ss_pred CCCEEEccCCCCCCCCccccCCCCCCCEEEccccC-CCCCcchhccCCCCCCEEEccC-ccCCCCcchhcCCCCCCCEEE
Q 040154 46 SLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNV-FSGDMPAVIGNLSSLKALVLSK-TNFSSDLPAFIGNLPSLEILD 123 (600)
Q Consensus 46 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~ 123 (600)
+|++|++++|++++..+.+|.++++|++|++++|. +....+..|.++++|++|++++ |.+....+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555554444455555555555555554 5444444555555566666655 555544445555556666666
Q ss_pred ccCCccccccCcccCCCCCCC---EEEccCC-CCCCcchhhcCCCCCCC-EEEecCCCCcccCCccccCCCCCcEEeccc
Q 040154 124 LSGNKISGELPDFFGNLPSLE---ELDLSGN-QLSGDFSVSTGNLTSLK-RLSLESCSFLGKLPPSVGNLTQLQWLGLAS 198 (600)
Q Consensus 124 l~~~~~~~~~~~~l~~l~~L~---~L~l~~n-~i~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 198 (600)
+++|.+++ +|. +..+++|+ +|++++| .++...+..|..+++|+ +|++++|.+....+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66665553 333 55555555 6666666 56555555566666666 6666666665443333444 6677777777
Q ss_pred cc-cccCCCccccCC-CCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCC
Q 040154 199 NN-FSGNLPSTIGNL-RSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRN 247 (600)
Q Consensus 199 n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 247 (600)
|+ +++..+..+..+ ++|+.|++++|.++...+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 665555666666 7777777777777654333 4566777777665
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=7.5e-22 Score=185.69 Aligned_cols=196 Identities=18% Similarity=0.187 Sum_probs=118.4
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCC-CCCCCccccCCCCCCCEEEccc-cCCCCCcchhccCCCCCCEEE
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNE-LSGRLPSSIGNLSSLEKLDLSL-NVFSGDMPAVIGNLSSLKALV 99 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 99 (600)
++++|++++|.+++..+.+|+++++|++|++++|+ +++..+.+|.++++|++|++++ |.+.+..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666665 6544455666666666666666 666655555666666666666
Q ss_pred ccCccCCCCcchhcCCCCCCC---EEEccCC-ccccccCcccCCCCCCC-EEEccCCCCCCcchhhcCCCCCCCEEEecC
Q 040154 100 LSKTNFSSDLPAFIGNLPSLE---ILDLSGN-KISGELPDFFGNLPSLE-ELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174 (600)
Q Consensus 100 L~~n~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 174 (600)
+++|.+.+ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666655 333 55666666 6666666 66555555566666666 6666666666433334443 5666666666
Q ss_pred CC-CcccCCccccCC-CCCcEEeccccccccCCCccccCCCCCcEEEecCC
Q 040154 175 CS-FLGKLPPSVGNL-TQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSC 223 (600)
Q Consensus 175 n~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 223 (600)
|. +.+..+..+..+ ++|+.|++++|+++...+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 63 655555556666 6666666666666543222 4456666666544
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.7e-23 Score=209.83 Aligned_cols=222 Identities=20% Similarity=0.209 Sum_probs=92.2
Q ss_pred ECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCc----cccCCCC-CCCEEEccccCCCCCcchhccCC-----CCCC
Q 040154 27 DLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLP----SSIGNLS-SLEKLDLSLNVFSGDMPAVIGNL-----SSLK 96 (600)
Q Consensus 27 ~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~ 96 (600)
+++.+.+++..|..+...++|++|++++|.+++..+ .++.+++ +|++|++++|.+....+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444444444444433333344444444444443333 3344444 44444444444443333333332 4444
Q ss_pred EEEccCccCCCCcch----hcCCC-CCCCEEEccCCccccccCcc----cCC-CCCCCEEEccCCCCCCcchh----hcC
Q 040154 97 ALVLSKTNFSSDLPA----FIGNL-PSLEILDLSGNKISGELPDF----FGN-LPSLEELDLSGNQLSGDFSV----STG 162 (600)
Q Consensus 97 ~L~L~~n~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~n~i~~~~~~----~~~ 162 (600)
+|++++|.+.+..+. .+..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+++.... .+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 444444444433222 12222 44444454444444332221 222 23455555555444432221 122
Q ss_pred CCC-CCCEEEecCCCCcccCCccc----cCC-CCCcEEeccccccccCC----CccccC-CCCCcEEEecCCcCCCCCc-
Q 040154 163 NLT-SLKRLSLESCSFLGKLPPSV----GNL-TQLQWLGLASNNFSGNL----PSTIGN-LRSLETLDISSCNFSGPIP- 230 (600)
Q Consensus 163 ~~~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~----~~~l~~-l~~L~~L~L~~n~l~~~~~- 230 (600)
..+ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++.. +..+.. .++|++|++++|.+.+..+
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 222 45555555555444333222 222 35555555555544321 122222 2345555555555544332
Q ss_pred ---hhccCCCCCCEEEcCCCc
Q 040154 231 ---SSLRNLTQLSCLDLSRNH 248 (600)
Q Consensus 231 ---~~~~~l~~L~~L~l~~n~ 248 (600)
..+..+++|+.|++++|.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHhcCCCccEEEeccCC
Confidence 222344555555555554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.2e-21 Score=189.56 Aligned_cols=192 Identities=25% Similarity=0.359 Sum_probs=91.7
Q ss_pred CCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 19 ~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
++++|++|+++++.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 344555555555555432 2 34555555555555555543222 55555555555555554432 134455555555
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCc
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFL 178 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 178 (600)
++++|.+.+.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-------------------- 168 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-------------------- 168 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--------------------
Confidence 55555544321 14445555555555555443221 4444444455444444443222
Q ss_pred ccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccc
Q 040154 179 GKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFS 250 (600)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 250 (600)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.
T Consensus 169 ------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 ------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred ------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 4444555555555555443321 4445555555555555543332 445555555555555543
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.9e-22 Score=194.74 Aligned_cols=201 Identities=21% Similarity=0.281 Sum_probs=101.2
Q ss_pred CCCCEEEccccCCCCCcchhc--cCCCCCCEEEccCccCCCCcc----hhcCCCCCCCEEEccCCccccccCcccCCCCC
Q 040154 69 SSLEKLDLSLNVFSGDMPAVI--GNLSSLKALVLSKTNFSSDLP----AFIGNLPSLEILDLSGNKISGELPDFFGNLPS 142 (600)
Q Consensus 69 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (600)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555444 555555555555555544222 22334555555555555555544455555555
Q ss_pred CCEEEccCCCCCCc--c--hhhcCCCCCCCEEEecCCCCcccCC--c-cccCCCCCcEEeccccccccCCCccccCC---
Q 040154 143 LEELDLSGNQLSGD--F--SVSTGNLTSLKRLSLESCSFLGKLP--P-SVGNLTQLQWLGLASNNFSGNLPSTIGNL--- 212 (600)
Q Consensus 143 L~~L~l~~n~i~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--- 212 (600)
|++|++++|.+.+. . +..+..+++|++|++++|.++...+ . .+..+++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 55555555554321 1 1112345555555555555542211 1 13445556666666666555544444444
Q ss_pred CCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccc
Q 040154 213 RSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLS 276 (600)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 276 (600)
++|++|++++|.++. +|..+. ++|++|++++|++.+. +. ...+++|+.|++++|++.
T Consensus 251 ~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~---~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ---PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC---TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch---hhhCCCccEEECcCCCCC
Confidence 456666666666552 333332 5566666666665532 11 124566666666666543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.7e-21 Score=180.51 Aligned_cols=178 Identities=26% Similarity=0.322 Sum_probs=110.2
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
..++++++++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777766 3343333 567777777777766666667777777777777777766666666666777777777
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccC
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
+|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 76666655566666666666666666666554445566666666666666665555545555555555555555555544
Q ss_pred CccccCCCCCcEEeccccccc
Q 040154 182 PPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 182 ~~~l~~l~~L~~L~l~~n~l~ 202 (600)
+..+..+++|+.|++++|++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 444555555555555555544
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.6e-22 Score=199.43 Aligned_cols=222 Identities=20% Similarity=0.268 Sum_probs=149.5
Q ss_pred CCcEEECCCCCCCCchhhhhcCC--CCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCC-cchhccCCCCCCEE
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNL--GSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGD-MPAVIGNLSSLKAL 98 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 98 (600)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4677888877765 3555666 7788888888877755544 55677888888888776644 66667778888888
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCC-cccc-ccCcccCCCCCCCEEEccCC-CCCCc-chhhcCCCC-CCCEEEec
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGN-KISG-ELPDFFGNLPSLEELDLSGN-QLSGD-FSVSTGNLT-SLKRLSLE 173 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~n-~i~~~-~~~~~~~~~-~L~~L~l~ 173 (600)
++++|.+.+..+..++.+++|++|++++| .+++ ..+..+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888777666667777788888888877 4553 24445667777777777777 66643 345566677 77777777
Q ss_pred CC--CCc-ccCCccccCCCCCcEEeccccc-cccCCCccccCCCCCcEEEecCCc-CCCCCchhccCCCCCCEEEcCCC
Q 040154 174 SC--SFL-GKLPPSVGNLTQLQWLGLASNN-FSGNLPSTIGNLRSLETLDISSCN-FSGPIPSSLRNLTQLSCLDLSRN 247 (600)
Q Consensus 174 ~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 247 (600)
+| .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77 343 2334455667777777777777 555555566667777777777774 32222234566677777777766
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.2e-21 Score=187.49 Aligned_cols=194 Identities=25% Similarity=0.348 Sum_probs=129.7
Q ss_pred cCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCE
Q 040154 42 GNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEI 121 (600)
Q Consensus 42 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 121 (600)
+.+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~------------- 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV------------- 100 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-------------
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-------------
Confidence 345566666666665552 23 35555555555555555543322 44555555555555544432
Q ss_pred EEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEecccccc
Q 040154 122 LDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNF 201 (600)
Q Consensus 122 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 201 (600)
+.+..+++|++|++++|.+++.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 101 -------------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 101 -------------SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp -------------GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred -------------hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 23445555555555555555432 25566667777777776665432 77888999999999998
Q ss_pred ccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEEccCCccce
Q 040154 202 SGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSV 277 (600)
Q Consensus 202 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 277 (600)
++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ ...+++|+.|++++|++..
T Consensus 164 ~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 164 SDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEEEC
T ss_pred CCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCeeec
Confidence 86533 8899999999999999987654 8899999999999999986442 3489999999999997644
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.4e-23 Score=209.86 Aligned_cols=240 Identities=21% Similarity=0.271 Sum_probs=179.5
Q ss_pred chhhhhcCCCCCCEEEccCCCCCCCC----ccccCCCCCCCEEEccccCCC---CCcchhc-------cCCCCCCEEEcc
Q 040154 36 EIPASIGNLGSLKELDLSTNELSGRL----PSSIGNLSSLEKLDLSLNVFS---GDMPAVI-------GNLSSLKALVLS 101 (600)
Q Consensus 36 ~~~~~~~~l~~L~~L~l~~~~i~~~~----~~~l~~l~~L~~L~l~~n~~~---~~~~~~~-------~~l~~L~~L~L~ 101 (600)
.++.++..+++|++|++++|.+.+.. +..+..+++|++|++++|.+. +..|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45667788999999999999998653 344778999999999997543 3444444 789999999999
Q ss_pred CccCCC----CcchhcCCCCCCCEEEccCCccccccCcc----cCCC---------CCCCEEEccCCCCCC-cch---hh
Q 040154 102 KTNFSS----DLPAFIGNLPSLEILDLSGNKISGELPDF----FGNL---------PSLEELDLSGNQLSG-DFS---VS 160 (600)
Q Consensus 102 ~n~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~n~i~~-~~~---~~ 160 (600)
+|.+.. .++..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|.++. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999987 46678888999999999999986443333 3333 899999999998873 233 35
Q ss_pred cCCCCCCCEEEecCCCCcc-----cCCccccCCCCCcEEeccccccc----cCCCccccCCCCCcEEEecCCcCCCC---
Q 040154 161 TGNLTSLKRLSLESCSFLG-----KLPPSVGNLTQLQWLGLASNNFS----GNLPSTIGNLRSLETLDISSCNFSGP--- 228 (600)
Q Consensus 161 ~~~~~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~--- 228 (600)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..++..+..+++|++|+|++|.+.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6678899999999998873 23336778889999999999885 34566778888899999998888765
Q ss_pred -CchhccC--CCCCCEEEcCCCccccc----cchhHHhhcCCCCCEEEccCCccc
Q 040154 229 -IPSSLRN--LTQLSCLDLSRNHFSGG----MELDVFLISLKNLEVLYLSSNRLS 276 (600)
Q Consensus 229 -~~~~~~~--l~~L~~L~l~~n~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~ 276 (600)
++..+.. +++|+.|++++|.+... ++ ..+...+++|+.|++++|++.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-TVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-HHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-HHHHhcCCCceEEEccCCcCC
Confidence 3455533 78888888888888752 22 122235788888888888654
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=8.8e-23 Score=204.63 Aligned_cols=248 Identities=20% Similarity=0.223 Sum_probs=185.7
Q ss_pred ccCCceeecCcCCCCCCCCcEEECCCCCCCCchh----hhhcCCC-CCCEEEccCCCCCCCCccccCCC-----CCCCEE
Q 040154 5 FLKKKTGGIPSSLGNLSKLIYLDLSSNQLSGEIP----ASIGNLG-SLKELDLSTNELSGRLPSSIGNL-----SSLEKL 74 (600)
Q Consensus 5 ~~~~~~~~l~~~~~~l~~L~~L~Ls~~~l~~~~~----~~~~~l~-~L~~L~l~~~~i~~~~~~~l~~l-----~~L~~L 74 (600)
-..+++|.+|..+...++|++||+++|.+++..+ .++..++ +|++|++++|.+++..+..+..+ ++|++|
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 3567778888777777779999999999987666 7788888 89999999999987767666664 899999
Q ss_pred EccccCCCCCcchh----ccCC-CCCCEEEccCccCCCCcchh----cCC-CCCCCEEEccCCccccccC----cccCCC
Q 040154 75 DLSLNVFSGDMPAV----IGNL-SSLKALVLSKTNFSSDLPAF----IGN-LPSLEILDLSGNKISGELP----DFFGNL 140 (600)
Q Consensus 75 ~l~~n~~~~~~~~~----~~~l-~~L~~L~L~~n~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~----~~l~~l 140 (600)
++++|.+.+..+.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+++..+ ..+..+
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 99999887666654 4444 89999999999987755543 444 3689999999998875333 334555
Q ss_pred C-CCCEEEccCCCCCCcchhh----cCCC-CCCCEEEecCCCCcccC----CccccC-CCCCcEEeccccccccCCC---
Q 040154 141 P-SLEELDLSGNQLSGDFSVS----TGNL-TSLKRLSLESCSFLGKL----PPSVGN-LTQLQWLGLASNNFSGNLP--- 206 (600)
Q Consensus 141 ~-~L~~L~l~~n~i~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~----~~~l~~-l~~L~~L~l~~n~l~~~~~--- 206 (600)
+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+.. +..+.. .++|++|++++|.+++..+
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 5 8999999999887766543 3445 59999999999987642 334444 4589999999999886544
Q ss_pred -ccccCCCCCcEEEecCCcCCCCCc-------hhccCCCCCCEEEcCCCccccc
Q 040154 207 -STIGNLRSLETLDISSCNFSGPIP-------SSLRNLTQLSCLDLSRNHFSGG 252 (600)
Q Consensus 207 -~~l~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~~~~~ 252 (600)
..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+...
T Consensus 246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 344667889999999998554433 3456677788888888887654
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=191.00 Aligned_cols=227 Identities=21% Similarity=0.254 Sum_probs=186.3
Q ss_pred CCCCcEEECCCCCCCCchhh---hhcCCCCCCEEEccCCCCCCCCcccc--CCCCCCCEEEccccCCCCCcc----hhcc
Q 040154 20 LSKLIYLDLSSNQLSGEIPA---SIGNLGSLKELDLSTNELSGRLPSSI--GNLSSLEKLDLSLNVFSGDMP----AVIG 90 (600)
Q Consensus 20 l~~L~~L~Ls~~~l~~~~~~---~~~~l~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~ 90 (600)
...++.+++.++.++..... .+..+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578899999887632111 12335779999999999998888888 999999999999999986544 4456
Q ss_pred CCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccc---c-CcccCCCCCCCEEEccCCCCCCcchh---hcCC
Q 040154 91 NLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGE---L-PDFFGNLPSLEELDLSGNQLSGDFSV---STGN 163 (600)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~ 163 (600)
.+++|++|++++|.+....+..++++++|++|++++|++.+. . +..+..+++|++|++++|.++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 799999999999999988889999999999999999997642 1 23347899999999999999743322 3568
Q ss_pred CCCCCEEEecCCCCcccCCccccCC---CCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCC
Q 040154 164 LTSLKRLSLESCSFLGKLPPSVGNL---TQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLS 240 (600)
Q Consensus 164 ~~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 240 (600)
+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999998877777766 69999999999999 5566553 7999999999999975 32 67889999
Q ss_pred EEEcCCCcccc
Q 040154 241 CLDLSRNHFSG 251 (600)
Q Consensus 241 ~L~l~~n~~~~ 251 (600)
.|++++|++..
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999864
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.6e-22 Score=197.69 Aligned_cols=234 Identities=21% Similarity=0.241 Sum_probs=186.8
Q ss_pred CCCCC--CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCC-CccccCCCCCCCEEEccccCCCCCcchhccCC
Q 040154 16 SLGNL--SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGR-LPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNL 92 (600)
Q Consensus 16 ~~~~l--~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 92 (600)
.+..+ +++++|+++++.+++..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..++.+
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 34445 7999999999999866555 56799999999999998855 77788999999999999999987888889999
Q ss_pred CCCCEEEccCc-cCCC-CcchhcCCCCCCCEEEccCC-ccccc-cCcccCCCC-CCCEEEccCC--CCC-CcchhhcCCC
Q 040154 93 SSLKALVLSKT-NFSS-DLPAFIGNLPSLEILDLSGN-KISGE-LPDFFGNLP-SLEELDLSGN--QLS-GDFSVSTGNL 164 (600)
Q Consensus 93 ~~L~~L~L~~n-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~n--~i~-~~~~~~~~~~ 164 (600)
++|++|++++| .+++ ..+..+.++++|++|++++| .+++. .+..+..++ +|++|++++| .++ ...+..+..+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 99999999999 5665 36677888999999999999 88753 456678899 9999999999 555 3456667789
Q ss_pred CCCCEEEecCCC-CcccCCccccCCCCCcEEeccccc-cccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEE
Q 040154 165 TSLKRLSLESCS-FLGKLPPSVGNLTQLQWLGLASNN-FSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCL 242 (600)
Q Consensus 165 ~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 242 (600)
++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +.......+. ..+..|
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L 298 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHL 298 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTS
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcce
Confidence 999999999999 666667788999999999999995 33322336788999999999999 5543333332 235555
Q ss_pred EcCCCcccccc
Q 040154 243 DLSRNHFSGGM 253 (600)
Q Consensus 243 ~l~~n~~~~~~ 253 (600)
++++|.+++..
T Consensus 299 ~l~~n~l~~~~ 309 (336)
T 2ast_B 299 QINCSHFTTIA 309 (336)
T ss_dssp EESCCCSCCTT
T ss_pred EEecccCcccc
Confidence 67888877533
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.7e-20 Score=173.43 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=130.9
Q ss_pred CCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEe
Q 040154 405 NFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLD 484 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 484 (600)
+.++.|++++|.+++..+..+..++. |++|++++|+++++.|..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~-L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKK-LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTT-CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCC-CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 56888888888888777777888875 99999999999988899999999999999999999977777889999999999
Q ss_pred CCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhcccc
Q 040154 485 LGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNA 554 (600)
Q Consensus 485 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 554 (600)
|++|+++++.|..|..+++|+.|+|++|+++++.+.. +..+++|+.|++++|++.|.|+..|+..|-.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--FSPLRAIQTMHLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH--HhCCCCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence 9999999999999999999999999999999886543 4778999999999999999999999987743
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=172.29 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=131.0
Q ss_pred CCCCeeeCCCCcccccCC-hhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEE
Q 040154 405 NFLEGLDLSRNNLSGLLP-HCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFL 483 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 483 (600)
+.++.|++++|.+++..+ ..+..++. |++|++++|+++++.+..|.++++|++|+|++|.+++..+..|.++++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCC-CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 446788888888887654 45677775 9999999999998888899999999999999999998888889999999999
Q ss_pred eCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccc
Q 040154 484 DLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAM 555 (600)
Q Consensus 484 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l 555 (600)
+|++|+++++.|..|..+++|+.|+|++|+++++.+..+ ..+++|+.|++++|++.|.|+..|+..|..-
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~ 180 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAWLGEWLRK 180 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHHHHHHHHH
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHHHHHHHHh
Confidence 999999999999999999999999999999999866554 7789999999999999999999999887653
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.1e-20 Score=171.66 Aligned_cols=174 Identities=21% Similarity=0.189 Sum_probs=145.4
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF 442 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 442 (600)
..++++++.++..+...+++++.|++++|.+.+..+..+..+++|++|++++|++++..+..+..++. |++|++++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCC-cCEEECCCCcC
Confidence 56677777776666556778899999999988777777888999999999999998776666777775 99999999999
Q ss_pred ccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCC
Q 040154 443 FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPG 522 (600)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 522 (600)
++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|+++++.+..|..+++|+.|++++|++.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 87777778889999999999999987777778889999999999999988887778889999999999997652
Q ss_pred CCCCCCcceEEEccCCcCcccCCh
Q 040154 523 TDCGFPKLRIIDISSNRFIGKLPS 546 (600)
Q Consensus 523 ~~~~~~~L~~L~l~~N~~~~~~~~ 546 (600)
.++.|+.|+++.|.++|.+|.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBC
T ss_pred ---CCCCHHHHHHHHHhCCceeec
Confidence 356788999999999998884
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1e-20 Score=189.38 Aligned_cols=183 Identities=23% Similarity=0.176 Sum_probs=158.8
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhh-ccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWIC-NLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNK 441 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 441 (600)
..++++++.++..+...+..++.|++++|.+++..+..+. .+++|+.|+|++|.|++..+..+..++. |++|+|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC-CCEEECCCCc
Confidence 5677888877776665677899999999999998888887 8999999999999999888888999985 9999999999
Q ss_pred cccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCccc---CCCCCCCEEEccCccceeec
Q 040154 442 FFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWL---GALPNLNILILQSNKFHGII 518 (600)
Q Consensus 442 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~ 518 (600)
++++.+..|.++++|+.|+|++|.+.+..+..|.++++|++|+|++|+++.+.+..| ..+++|+.|+|++|+++++.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 998888899999999999999999999889999999999999999999998777777 56999999999999999774
Q ss_pred CCCCCCCCCCc--ceEEEccCCcCcccCChhh
Q 040154 519 REPGTDCGFPK--LRIIDISSNRFIGKLPSKY 548 (600)
Q Consensus 519 ~~~~~~~~~~~--L~~L~l~~N~~~~~~~~~~ 548 (600)
+..+ ..++. ++.|++++|++.|.|...+
T Consensus 180 ~~~~--~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 180 LTDL--QKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp HHHH--HHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred HHHh--hhccHhhcceEEecCCCccCCcCcHH
Confidence 3222 44565 4889999999999987654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.9e-19 Score=165.32 Aligned_cols=181 Identities=25% Similarity=0.271 Sum_probs=127.8
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCc
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKT 103 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 103 (600)
+.++.+++.++. +|..+ .++|++|++++|++++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 567777777763 33222 357788888888877666666777788888888888777666666777778888888877
Q ss_pred cCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCc
Q 040154 104 NFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPP 183 (600)
Q Consensus 104 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 183 (600)
.+....+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 777666666777777888888777777665566777777777777777777666666677777777777777543
Q ss_pred cccCCCCCcEEeccccccccCCCccccCCCC
Q 040154 184 SVGNLTQLQWLGLASNNFSGNLPSTIGNLRS 214 (600)
Q Consensus 184 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 214 (600)
..++.|+.|+++.|++++.+|..++.++.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 23456777777777777777766665543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=8.7e-20 Score=181.82 Aligned_cols=239 Identities=21% Similarity=0.117 Sum_probs=137.0
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcc-hhccCCCCCCE-EEcc
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMP-AVIGNLSSLKA-LVLS 101 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~L~ 101 (600)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|+++++|++|+|++|.+.+.++ .+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56666777776 344433 2567777777777775545567777777777777777654333 45666776665 3445
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccC-CCCCCcchhhcCCCC-CCCEEEecCCCCcc
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSG-NQLSGDFSVSTGNLT-SLKRLSLESCSFLG 179 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~~~~-~L~~L~l~~n~~~~ 179 (600)
.|++....+.+|.++++|+.|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666666666677777777777777777655444555555666666654 345544444454443 46666677666665
Q ss_pred cCCccccCCCCCcEEeccc-cccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHH
Q 040154 180 KLPPSVGNLTQLQWLGLAS-NNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVF 258 (600)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 258 (600)
+.+..+ ....|+++++.+ |.++...+..|.++++|+.|++++|+++...+..| .+|+.|.+.++.-....+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~--- 241 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT--- 241 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC---
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC---
Confidence 443333 334566666653 45554444556666666667776666665444333 3444444443332222221
Q ss_pred hhcCCCCCEEEccC
Q 040154 259 LISLKNLEVLYLSS 272 (600)
Q Consensus 259 ~~~~~~L~~L~l~~ 272 (600)
...+++|+.+++.+
T Consensus 242 l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 LEKLVALMEASLTY 255 (350)
T ss_dssp TTTCCSCCEEECSC
T ss_pred chhCcChhhCcCCC
Confidence 12455555655554
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=6.6e-19 Score=175.45 Aligned_cols=231 Identities=19% Similarity=0.155 Sum_probs=184.0
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCCE-EEccccCCCCCcchh
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRL-PSSIGNLSSLEK-LDLSLNVFSGDMPAV 88 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~-L~l~~n~~~~~~~~~ 88 (600)
.++|..+. +++++|+|++|.|+.+.+.+|+++++|++|+|++|++.+.+ +.+|.++++++. +.+++|.+....+..
T Consensus 22 t~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 22 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 36777663 68999999999999777788999999999999999986544 457899999876 566678898888899
Q ss_pred ccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccC-CccccccCcccCCCC-CCCEEEccCCCCCCcchhhcCCCCC
Q 040154 89 IGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSG-NKISGELPDFFGNLP-SLEELDLSGNQLSGDFSVSTGNLTS 166 (600)
Q Consensus 89 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~ 166 (600)
|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++...+..| ...+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~ 178 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQ 178 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccc
Confidence 99999999999999999887777777788899999976 456655556677764 68999999999986655555 4578
Q ss_pred CCEEEecC-CCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcC
Q 040154 167 LKRLSLES-CSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLS 245 (600)
Q Consensus 167 L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 245 (600)
|+++.+.+ |.+..+.+.+|..+++|++|++++|+++...+.. +.+|+.|.+.++.-....| .+..+++|+.+++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 99999986 5566655567899999999999999998654444 4567777766664333555 47889999999998
Q ss_pred CCc
Q 040154 246 RNH 248 (600)
Q Consensus 246 ~n~ 248 (600)
++.
T Consensus 255 ~~~ 257 (350)
T 4ay9_X 255 YPS 257 (350)
T ss_dssp CHH
T ss_pred CCc
Confidence 654
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=4.9e-19 Score=164.84 Aligned_cols=145 Identities=21% Similarity=0.210 Sum_probs=123.9
Q ss_pred CCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEe
Q 040154 405 NFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLD 484 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 484 (600)
++|+.|++++|.+++..+..+..++. |++|++++|++..+.+..|..+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLIN-LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccC-CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 67888888888888877888888875 99999999999877777888999999999999999988778889999999999
Q ss_pred CCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCC-hhhHhccc
Q 040154 485 LGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP-SKYFQCWN 553 (600)
Q Consensus 485 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~ 553 (600)
|++|+++ .+|..+..+++|+.|+|++|+++++.+. .+..+++|+.|++++|++.|.|+ ..++..|-
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~ 185 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG--AFDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECTTSCBCTTBGGGHHHHHHH
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH--HHhCCCCCCEEEeeCCCccCCcchhHHHHHHH
Confidence 9999998 5577788999999999999999987543 34778999999999999999996 56666654
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=5.8e-19 Score=170.72 Aligned_cols=171 Identities=28% Similarity=0.358 Sum_probs=83.5
Q ss_pred CCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEE
Q 040154 43 NLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEIL 122 (600)
Q Consensus 43 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 122 (600)
.+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 344455555555544422 2 24445555555555554443322 44455555555555554431 124445555555
Q ss_pred EccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccc
Q 040154 123 DLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 123 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
++++|.+.+. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555554432 2344455555555555555443 344455555555555555544322 555555555555555555
Q ss_pred cCCCccccCCCCCcEEEecCCcCCC
Q 040154 203 GNLPSTIGNLRSLETLDISSCNFSG 227 (600)
Q Consensus 203 ~~~~~~l~~l~~L~~L~L~~n~l~~ 227 (600)
+. ..+..+++|+.|++++|.+..
T Consensus 192 ~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred CC--hhhccCCCCCEEECcCCcccC
Confidence 32 235555555555555555543
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=162.18 Aligned_cols=154 Identities=23% Similarity=0.243 Sum_probs=138.4
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccCh-hhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIA-PWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNK 441 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 441 (600)
+.+++++|.++..+...+..++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..++. |++|++++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC-CCEEECCCCc
Confidence 467777777776655556778899999999988754 46889999999999999999888888999885 9999999999
Q ss_pred cccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 442 FFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 442 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++++.|..|..+++|+.|+|++|++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9988888999999999999999999999899999999999999999999999999999999999999999999754
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=8.1e-19 Score=162.17 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=140.9
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF 442 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 442 (600)
..++++++.++..+...+++++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..++. |++|+|++|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS-CCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC-CCEEECCCCcC
Confidence 56778888777766656789999999999999888888999999999999999999988999999985 99999999999
Q ss_pred ccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCcccee
Q 040154 443 FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHG 516 (600)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 516 (600)
+.+.+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98888889999999999999999999989999999999999999999999998899999999999999999864
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.1e-18 Score=166.83 Aligned_cols=173 Identities=27% Similarity=0.314 Sum_probs=129.4
Q ss_pred CCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCC
Q 040154 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96 (600)
Q Consensus 17 ~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 96 (600)
+.++++|++|++++|.+++. ..++.+++|++|++++|++++..+ +.++++|++|++++|.+.+ . ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 45677788888888887754 347778888888888888875433 7788888888888887764 2 2377788888
Q ss_pred EEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCC
Q 040154 97 ALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCS 176 (600)
Q Consensus 97 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 176 (600)
+|++++|++.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 888888887764 4567778888888888887754 557778888888888888876554 7778888888888888
Q ss_pred CcccCCccccCCCCCcEEecccccccc
Q 040154 177 FLGKLPPSVGNLTQLQWLGLASNNFSG 203 (600)
Q Consensus 177 ~~~~~~~~l~~l~~L~~L~l~~n~l~~ 203 (600)
+.+. ..+..+++|+.|++++|++..
T Consensus 190 i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC--hhhccCCCCCEEECcCCcccC
Confidence 7764 347778888888888887764
No 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.3e-18 Score=155.53 Aligned_cols=142 Identities=22% Similarity=0.279 Sum_probs=126.0
Q ss_pred CeeeCCCCcccccCChhhhhccccCceEECCCCccccccCc-cccCCCCccEEEccCCccccccCcchhcCCCCcEEeCC
Q 040154 408 EGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQ-TFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486 (600)
Q Consensus 408 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 486 (600)
+.+++++|+++ .+|..+.. ++++|++++|++++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999999997 55654432 599999999999877764 58999999999999999999989999999999999999
Q ss_pred CCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccc
Q 040154 487 NNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAM 555 (600)
Q Consensus 487 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l 555 (600)
+|+++++.+..|.++++|++|+|++|++++..+..+ ..+++|+.|++++|++.|.++..|+..|-..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~ 153 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAEWLRK 153 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHHHHHH
Confidence 999999999999999999999999999999976654 7789999999999999999998888776443
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=7.1e-18 Score=156.94 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=138.4
Q ss_pred cEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCcc
Q 040154 363 FSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKF 442 (600)
Q Consensus 363 ~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i 442 (600)
..++++++.++..+...+++++.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..++. |++|++++|++
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-LTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-cCEEECCCCcC
Confidence 56777777777776666789999999999999998999999999999999999998776677788885 99999999999
Q ss_pred ccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 443 FGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
++..+..|..+++|+.|+|++|.++ .+|..+.++++|++|+|++|+++++.+..|..+++|+.|++++|++...
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9888888999999999999999999 7788899999999999999999988888899999999999999998743
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=5.3e-18 Score=179.66 Aligned_cols=174 Identities=26% Similarity=0.299 Sum_probs=112.6
Q ss_pred CCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCC
Q 040154 17 LGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLK 96 (600)
Q Consensus 17 ~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 96 (600)
+..+++|++|++++|.+... ..++.+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+. ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 44566677777777776643 246667777777777777764433 66777777777777766532 2466677777
Q ss_pred EEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCC
Q 040154 97 ALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCS 176 (600)
Q Consensus 97 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 176 (600)
+|+|++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 777777776653 3466667777777777776643 456666777777777776665544 6666677777777776
Q ss_pred CcccCCccccCCCCCcEEeccccccccC
Q 040154 177 FLGKLPPSVGNLTQLQWLGLASNNFSGN 204 (600)
Q Consensus 177 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 204 (600)
+.+. ..+..+++|+.|++++|++.+.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6654 3466666777777777666543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.5e-18 Score=183.75 Aligned_cols=194 Identities=26% Similarity=0.331 Sum_probs=161.2
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
..+..+++..+.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345666777777775533 5678999999999999984 44 58999999999999999986655 889999999999
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCccc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK 180 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 180 (600)
++|.+... ..+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 99998863 3688899999999999999853 4588899999999999999875 5688899999999999998876
Q ss_pred CCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCc
Q 040154 181 LPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIP 230 (600)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 230 (600)
.| +..+++|+.|++++|++++. ..+..+++|+.|+|++|.+.+...
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 55 88899999999999998864 468888999999999998875433
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.2e-17 Score=174.92 Aligned_cols=180 Identities=26% Similarity=0.346 Sum_probs=109.1
Q ss_pred CCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEcc
Q 040154 46 SLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLS 125 (600)
Q Consensus 46 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 125 (600)
+|++|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66666666666664 444332 56666666666665 333 345666666666666665 333 433 66667776
Q ss_pred CCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCC
Q 040154 126 GNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNL 205 (600)
Q Consensus 126 ~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 205 (600)
+|.+++ +|. .+++|+.|++++|.+++. +. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666664 333 456677777777766653 22 45667777777777665 333 43 67777777777776 33
Q ss_pred CccccCCCCC-------cEEEecCCcCCCCCchhccCCCCCCEEEcCCCcccccc
Q 040154 206 PSTIGNLRSL-------ETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGM 253 (600)
Q Consensus 206 ~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 253 (600)
|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++.+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 33 332 55 777777777774 4555556777777777777776533
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.7e-18 Score=169.97 Aligned_cols=176 Identities=27% Similarity=0.208 Sum_probs=118.0
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccC-CCCCCCEEEccccCCCCCcchhccCCCCCCEEEccC
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIG-NLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK 102 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 102 (600)
++++++++.++. +|..+. +.+++|+|++|++++..+..+. ++++|++|++++|.+.+..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 577888777774 443332 4577788888887766666666 777788888887777766666777777777777777
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhc---CCCCCCCEEEecCCCCcc
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVST---GNLTSLKRLSLESCSFLG 179 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~---~~~~~L~~L~l~~n~~~~ 179 (600)
|++....+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.++......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666667777777777777777776666677777777777777777766555444 345666666666666655
Q ss_pred cCCccccCCCC--CcEEeccccccc
Q 040154 180 KLPPSVGNLTQ--LQWLGLASNNFS 202 (600)
Q Consensus 180 ~~~~~l~~l~~--L~~L~l~~n~l~ 202 (600)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444544444 255555555543
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=7.5e-18 Score=152.01 Aligned_cols=141 Identities=22% Similarity=0.307 Sum_probs=124.6
Q ss_pred CeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCC
Q 040154 408 EGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGN 487 (600)
Q Consensus 408 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~ 487 (600)
+.+++++|.++ .+|..+ +.+|++|++++|+++ .+|..|..+++|+.|+|++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 67899999988 455433 236999999999998 5668999999999999999999988888999999999999999
Q ss_pred CcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccc
Q 040154 488 NQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAM 555 (600)
Q Consensus 488 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l 555 (600)
|+++++.+..|..+++|+.|+|++|+++.+.+. .+..+++|+.|++++|++.|.|+..||..|..-
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~ 153 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG--AFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChh--hhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence 999999999999999999999999999987543 347789999999999999999999999988643
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-17 Score=151.64 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=84.6
Q ss_pred cCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCE
Q 040154 42 GNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEI 121 (600)
Q Consensus 42 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 121 (600)
+.+++|++|++++|.++ .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455555555555555 333 35555555555555554431 124555556666666665555444455555666666
Q ss_pred EEccCCccccccCcccCCCCCCCEEEccCCC-CCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccc
Q 040154 122 LDLSGNKISGELPDFFGNLPSLEELDLSGNQ-LSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNN 200 (600)
Q Consensus 122 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 200 (600)
|++++|.+++..+..+..+++|++|++++|. +... + .+..+++|++|++++|.+.+.. .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 6666666555445555566666666666665 4432 2 4555666666666666665432 45666777777777776
Q ss_pred cc
Q 040154 201 FS 202 (600)
Q Consensus 201 l~ 202 (600)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=4.9e-17 Score=170.23 Aligned_cols=188 Identities=28% Similarity=0.342 Sum_probs=151.3
Q ss_pred CCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 22 KLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 22 ~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
++++|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 45444 378999999999998 566 457899999999999986 555 554 89999999
Q ss_pred CccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccC
Q 040154 102 KTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKL 181 (600)
Q Consensus 102 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 181 (600)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++. +. +. ++|+.|++++|.++. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~-l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLES-L 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSS-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCc-h
Confidence 999987 444 67899999999999986 454 578999999999999874 44 54 899999999999884 4
Q ss_pred CccccCCCCC-------cEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCC
Q 040154 182 PPSVGNLTQL-------QWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLT 237 (600)
Q Consensus 182 ~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 237 (600)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 44 543 67 99999999998 4677777799999999999999988887776543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.8e-17 Score=149.18 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=108.0
Q ss_pred CCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCE
Q 040154 66 GNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEE 145 (600)
Q Consensus 66 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 145 (600)
+.+++|++|++++|.+. .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56677778888777776 334 577777788888877755432 35677777888888877777666677777778888
Q ss_pred EEccCCCCCCcchhhcCCCCCCCEEEecCCC-CcccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCc
Q 040154 146 LDLSGNQLSGDFSVSTGNLTSLKRLSLESCS-FLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCN 224 (600)
Q Consensus 146 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 224 (600)
|++++|.+++..+..+..+++|++|++++|. +... + .+..+++|++|++++|++++.. .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 8888877776667777777778888888776 5443 3 5777777888888887776532 56777778888887777
Q ss_pred CC
Q 040154 225 FS 226 (600)
Q Consensus 225 l~ 226 (600)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.3e-17 Score=158.53 Aligned_cols=170 Identities=21% Similarity=0.340 Sum_probs=117.6
Q ss_pred CCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 19 NLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 19 ~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
++.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556777788888887543 5677888888888888887 344 67788888888888888875544 7788888888
Q ss_pred EccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCc
Q 040154 99 VLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFL 178 (600)
Q Consensus 99 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 178 (600)
++++|++.+.. . +.. ++|++|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 91 ~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 88888777532 2 223 7777777777777643 3466777777777777777654 24566666777777766666
Q ss_pred ccCCccccCCCCCcEEecccccccc
Q 040154 179 GKLPPSVGNLTQLQWLGLASNNFSG 203 (600)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~l~~ 203 (600)
+. ..+..+++|+.|++++|++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch--HHhccCCCCCEEeCCCCcccC
Confidence 55 445666666666666666653
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.6e-18 Score=169.67 Aligned_cols=273 Identities=15% Similarity=0.131 Sum_probs=129.0
Q ss_pred eecCcCCCC--CCCCcEEECCCCCCCCchhhhhcC-CCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcch
Q 040154 11 GGIPSSLGN--LSKLIYLDLSSNQLSGEIPASIGN-LGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPA 87 (600)
Q Consensus 11 ~~l~~~~~~--l~~L~~L~Ls~~~l~~~~~~~~~~-l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 87 (600)
|.++..+.. +.+++.|+++++ +.......+.. +++|++|||++|++.. ....-+.++.++.+.+..+. ....
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~---I~~~ 87 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANF---VPAY 87 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTE---ECTT
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccc---cCHH
Confidence 445554443 667888888875 33222334444 7889999999988871 00011111112333333321 2223
Q ss_pred hccC--------CCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCC----CCC
Q 040154 88 VIGN--------LSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQ----LSG 155 (600)
Q Consensus 88 ~~~~--------l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~----i~~ 155 (600)
+|.+ |++|++|++.+ .+..+...+|.+|++|+.|++.+|.+....+.+|.++.++..+....+. ...
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred HhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 3444 55555555555 4444444555555555555555555544444455555444444433310 111
Q ss_pred cchhhcCCCC--------------------------CCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccc
Q 040154 156 DFSVSTGNLT--------------------------SLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTI 209 (600)
Q Consensus 156 ~~~~~~~~~~--------------------------~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 209 (600)
....+|.++. +++.+.+.++-...........+++|+++++++|.++.+...+|
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 1112222222 22233333221110000001125566666666666665555566
Q ss_pred cCCCCCcEEEecCCcCCCCCchhccCCCCCC-EEEcCCCccccccchhHHhhcCCCCCEEEccCCccceeeccCCCCCCC
Q 040154 210 GNLRSLETLDISSCNFSGPIPSSLRNLTQLS-CLDLSRNHFSGGMELDVFLISLKNLEVLYLSSNRLSVHTKATSSTTSQ 288 (600)
Q Consensus 210 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 288 (600)
.+|++|+.+++.+| +..+...+|.+|++|+ .+++.+ .+. .+....| ..|++|+.++++++.+...+... ...++
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF-~~c~~L~~l~l~~n~i~~I~~~a-F~~~~ 321 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAF-MGCDNLRYVLATGDKITTLGDEL-FGNGV 321 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTT-TTCTTEEEEEECSSCCCEECTTT-TCTTC
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhh-hCCccCCEEEeCCCccCccchhh-hcCCc
Confidence 66666666666655 5555556666666666 666655 332 2222223 25666666666655443332211 11455
Q ss_pred cccEEE
Q 040154 289 KFGTVG 294 (600)
Q Consensus 289 ~L~~l~ 294 (600)
+|+.++
T Consensus 322 ~L~~ly 327 (329)
T 3sb4_A 322 PSKLIY 327 (329)
T ss_dssp CCCEEE
T ss_pred chhhhc
Confidence 555554
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=9.9e-18 Score=165.45 Aligned_cols=241 Identities=15% Similarity=0.116 Sum_probs=118.4
Q ss_pred CCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCC--------CCCCCEEEccccCCCCCcchhccC
Q 040154 20 LSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGN--------LSSLEKLDLSLNVFSGDMPAVIGN 91 (600)
Q Consensus 20 l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~--------l~~L~~L~l~~n~~~~~~~~~~~~ 91 (600)
+++|++|||++|.+... ...-+.++.++.+.+..+.| ...+|.+ |++|+.+++.. .+..+...+|.+
T Consensus 48 l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEe-cCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 78899999999988710 00011112233333333322 2233444 55555555555 444444445555
Q ss_pred CCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCcc----ccccCcccCCCCC-------------------------
Q 040154 92 LSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKI----SGELPDFFGNLPS------------------------- 142 (600)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~l~~l~~------------------------- 142 (600)
|++|+.+++.+|.+....+.+|.++.++..+....... ......+|.++..
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 55555555555555444444555544444444333111 0111112222222
Q ss_pred -CCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCCCccccCCCCCc-EEEe
Q 040154 143 -LEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLE-TLDI 220 (600)
Q Consensus 143 -L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L 220 (600)
++.+.+.++-...........+++|+++++.+|.+..+...+|.+|++|+++++.+| +..+.+.+|.+|++|+ .+++
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 223333222110000011112566666666666666665566666666666666665 5545556666666666 6666
Q ss_pred cCCcCCCCCchhccCCCCCCEEEcCCCccccccchhHHhhcCCCCCEEE
Q 040154 221 SSCNFSGPIPSSLRNLTQLSCLDLSRNHFSGGMELDVFLISLKNLEVLY 269 (600)
Q Consensus 221 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 269 (600)
.+ .++.+.+.+|.+|++|+.++++.|.+.. +....| ..+++|+.++
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELF-GNGVPSKLIY 327 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTT-CTTCCCCEEE
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCc-cchhhh-cCCcchhhhc
Confidence 65 5555555666666666666666665542 222222 2566666655
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=1.1e-16 Score=142.52 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=120.9
Q ss_pred CCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCC
Q 040154 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486 (600)
Q Consensus 407 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 486 (600)
.+.+++++++++. +|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4788899998884 443332 359999999999998877888999999999999999998877888999999999999
Q ss_pred CCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCC-hhhHhccc
Q 040154 487 NNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP-SKYFQCWN 553 (600)
Q Consensus 487 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~ 553 (600)
+|++++..+..|..+++|++|++++|+++++.+.. +..+++|+.|++++|++.|.+| ..++..|.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~ 150 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 150 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHH--hcCCcccCEEEecCCCeeccCccHHHHHHHH
Confidence 99999988888999999999999999999875433 3678999999999999999988 56666663
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.4e-17 Score=154.86 Aligned_cols=171 Identities=20% Similarity=0.263 Sum_probs=125.0
Q ss_pred CCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEE
Q 040154 43 NLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEIL 122 (600)
Q Consensus 43 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 122 (600)
.+.++..++++++.+++. + .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 355677778888888743 3 577888999999999988743 3 67888899999999998887554 8888889999
Q ss_pred EccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccc
Q 040154 123 DLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFS 202 (600)
Q Consensus 123 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (600)
++++|++++. +. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 9998888753 32 233 7888888888877754 3466777777777777777664 25667777777777777776
Q ss_pred cCCCccccCCCCCcEEEecCCcCCCC
Q 040154 203 GNLPSTIGNLRSLETLDISSCNFSGP 228 (600)
Q Consensus 203 ~~~~~~l~~l~~L~~L~L~~n~l~~~ 228 (600)
+. ..+..+++|+.|++++|.+...
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 55 4566667777777777766543
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=3.8e-15 Score=149.90 Aligned_cols=215 Identities=12% Similarity=0.047 Sum_probs=113.4
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEc
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVL 100 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 100 (600)
..++.+.+... ++.+...+|.++ +|+.+++..+ ++.+...+|.++ +|+.+.+.. .+......+|.+|++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 45555555442 443444555554 4666666544 444444555553 466666654 344445555666666666666
Q ss_pred cCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCCCCccc
Q 040154 101 SKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESCSFLGK 180 (600)
Q Consensus 101 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~ 180 (600)
.+|++......+|. +.+|+.+.+..+ +......+|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+..+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 66655554444454 456666666533 44344455666666666666543 34344445554 456666653 334444
Q ss_pred CCccccCCCCCcEEeccccccc-----cCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCC
Q 040154 181 LPPSVGNLTQLQWLGLASNNFS-----GNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSR 246 (600)
Q Consensus 181 ~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 246 (600)
...+|.+|++|+.+++.++.+. .....+|.+|++|+.+.+.. .+..+...+|.+|++|+.+.+..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 4455556666666665555443 23344555555555555552 34444445555555555555543
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.2e-18 Score=183.56 Aligned_cols=205 Identities=21% Similarity=0.222 Sum_probs=138.7
Q ss_pred CCCCcccEEEecCCCCCccchhhhCCCCCcEEECcCCC-------------CCCCCChhH-HhccCCcee-cccccccCC
Q 040154 285 TTSQKFGTVGLRSCNLTEFPNFLKNQKNVAVLDLSSNR-------------IHGKIPKWL-LEQNFSSLN-LSHNLLTGL 349 (600)
Q Consensus 285 ~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~n~-------------l~~~~~~~~-~~~~L~~L~-ls~n~l~~~ 349 (600)
...+.|+.|++++|.+..+|..++.+++|+.|++++|. ..+..|..+ ..++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 35677888888888888889889999999999987654 222223222 223455555 444433221
Q ss_pred CCCCCccCCCCCCcEEEcccCcccccCCCCCCCCcEEEcccCcccccChhhhhccCCCCeeeCCCCcccccCChhhhhcc
Q 040154 350 DQYPVVCPWGNRPFSLDFSSNFLQGPLPIPPPRTRNYLISNNSLIGGIAPWICNLNFLEGLDLSRNNLSGLLPHCLGNIS 429 (600)
Q Consensus 350 ~~~~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 429 (600)
..+.+.+|.+.... ...|+.|++++|.+++ +|. +..++
T Consensus 426 ----------------------------------~~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~ 463 (567)
T 1dce_A 426 ----------------------------------RSKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLL 463 (567)
T ss_dssp ----------------------------------HHHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGT
T ss_pred ----------------------------------hhhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccc
Confidence 12222333332211 1247788888888875 455 77777
Q ss_pred ccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccC-CcccCCCCCCCEEE
Q 040154 430 NHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTF-PSWLGALPNLNILI 508 (600)
Q Consensus 430 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 508 (600)
. |++|++++|+++ .+|..+..+++|+.|+|++|.+++ +| .+.++++|++|+|++|++++.. |..+..+++|+.|+
T Consensus 464 ~-L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 464 L-VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp T-CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred c-CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 4 888888888887 567788888888888888888885 45 7888888888888888888776 77888888888888
Q ss_pred ccCccceeecCCCCC-CCCCCcceEEEc
Q 040154 509 LQSNKFHGIIREPGT-DCGFPKLRIIDI 535 (600)
Q Consensus 509 L~~n~l~~~~~~~~~-~~~~~~L~~L~l 535 (600)
|++|++++..+.... ...+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888877443221 123677777764
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=3.8e-15 Score=149.90 Aligned_cols=246 Identities=13% Similarity=0.114 Sum_probs=198.8
Q ss_pred cCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCC
Q 040154 15 SSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSS 94 (600)
Q Consensus 15 ~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 94 (600)
.+|.++ +|+.+++..+ ++.+...+|.++ +|+.+.+.. .++.+...+|.+|++|+.++++.|.+......+|. +.+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 378875 7999999876 776777889886 699999986 67767778999999999999999999877677777 689
Q ss_pred CCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecC
Q 040154 95 LKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLES 174 (600)
Q Consensus 95 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 174 (600)
|+.+.+..+ +......+|.+|++|+.+++..+ +......+|.+ .+|+.+.+. +.++.....+|.++++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 999999854 66667789999999999999875 55456667777 789999995 457767788999999999999998
Q ss_pred CCCc-----ccCCccccCCCCCcEEeccccccccCCCccccCCCCCcEEEecCCcCCCCCchhccCCCCCCEEEcCCCcc
Q 040154 175 CSFL-----GKLPPSVGNLTQLQWLGLASNNFSGNLPSTIGNLRSLETLDISSCNFSGPIPSSLRNLTQLSCLDLSRNHF 249 (600)
Q Consensus 175 n~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 249 (600)
+.+. .+...+|.+|++|+.+.+.+ .++.+...+|.+|++|+.+.+..+ ++.+...+|.++ +|+.+++.+|..
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 8765 45667899999999999994 477677889999999999999655 676778899999 999999999876
Q ss_pred ccccchhHHhhcC-CCCCEEEccCCc
Q 040154 250 SGGMELDVFLISL-KNLEVLYLSSNR 274 (600)
Q Consensus 250 ~~~~~~~~~~~~~-~~L~~L~l~~n~ 274 (600)
.. +....|. .+ ..++.+++..+.
T Consensus 358 ~~-l~~~~F~-~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 358 PQ-VFEKVWY-GFPDDITVIRVPAES 381 (401)
T ss_dssp CB-CCCSSCC-CSCTTCCEEEECGGG
T ss_pred cc-ccccccc-CCCCCccEEEeCHHH
Confidence 53 2222222 34 356777776653
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=2.3e-15 Score=152.37 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=56.9
Q ss_pred CceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
|+.+.+.++ ++.+...+|.++.+|+.++|.++ ++.+...+|.+|++|+.+++..+ ++.+...+|.++++|+.+++..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 555555443 44344556666667777776543 55455567777777777777655 6666666777777777777755
Q ss_pred ccceeecCCCCCCCCCCcceEE
Q 040154 512 NKFHGIIREPGTDCGFPKLRII 533 (600)
Q Consensus 512 n~l~~~~~~~~~~~~~~~L~~L 533 (600)
+ +... ...|.++++|+.+
T Consensus 376 ~-~~~~---~~~F~~c~~L~~I 393 (394)
T 4fs7_A 376 R-LEQY---RYDFEDTTKFKWI 393 (394)
T ss_dssp G-GGGG---GGGBCTTCEEEEE
T ss_pred C-CEEh---hheecCCCCCcEE
Confidence 4 2222 1234566666654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.5e-16 Score=136.30 Aligned_cols=131 Identities=25% Similarity=0.251 Sum_probs=74.3
Q ss_pred CCCcEEECCCCCCC-CchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEE
Q 040154 21 SKLIYLDLSSNQLS-GEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALV 99 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 99 (600)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 44455556666666666666666543 4556666666666666666554555555566666666
Q ss_pred ccCccCCCCc-chhcCCCCCCCEEEccCCccccccC---cccCCCCCCCEEEccCCCC
Q 040154 100 LSKTNFSSDL-PAFIGNLPSLEILDLSGNKISGELP---DFFGNLPSLEELDLSGNQL 153 (600)
Q Consensus 100 L~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~i 153 (600)
+++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666655432 1445555666666666665553332 2445555555555555544
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.6e-16 Score=138.91 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=101.9
Q ss_pred cCCCCeeeCCCCccc-ccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcE
Q 040154 404 LNFLEGLDLSRNNLS-GLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEF 482 (600)
Q Consensus 404 ~~~L~~L~L~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 482 (600)
.+.|+.|++++|.++ +.+|..+..++. |++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVN-LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGG-CCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCC-CCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 466888888888887 566766777774 88888888888765 67778888888888888888767777777888888
Q ss_pred EeCCCCcccccCC-cccCCCCCCCEEEccCccceeecCC-CCCCCCCCcceEEEccCCcCc
Q 040154 483 LDLGNNQISDTFP-SWLGALPNLNILILQSNKFHGIIRE-PGTDCGFPKLRIIDISSNRFI 541 (600)
Q Consensus 483 L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~l~~N~~~ 541 (600)
|++++|++++..+ ..+..+++|+.|++++|++++..+. ...+..+++|+.|++++|++.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888876532 6777888888888888888766320 012356788888888888776
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=1.1e-14 Score=147.48 Aligned_cols=81 Identities=11% Similarity=-0.040 Sum_probs=44.3
Q ss_pred CCCCcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhh
Q 040154 81 FSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVS 160 (600)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 160 (600)
++.+...+|.+|.+|+.+.+.. .++.+...+|.+|++|+.+++..+ ++.....+|.++..|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3344555677777777777753 344444566667777777776543 33344455666666666555432 22233344
Q ss_pred cCCC
Q 040154 161 TGNL 164 (600)
Q Consensus 161 ~~~~ 164 (600)
|.++
T Consensus 136 F~~~ 139 (394)
T 4fs7_A 136 FKGC 139 (394)
T ss_dssp TTTC
T ss_pred eecc
Confidence 4443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.2e-18 Score=180.29 Aligned_cols=204 Identities=18% Similarity=0.191 Sum_probs=119.8
Q ss_pred CCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCC-------------CCCCCccccCCCCCCCEEE-ccccCCCC
Q 040154 18 GNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNE-------------LSGRLPSSIGNLSSLEKLD-LSLNVFSG 83 (600)
Q Consensus 18 ~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~-------------i~~~~~~~l~~l~~L~~L~-l~~n~~~~ 83 (600)
..+++|+.|+|++|.++ .+|..++.|++|++|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45566666666666665 556666666666666665543 2223333344444444444 2322110
Q ss_pred CcchhccCCCCCCEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCC
Q 040154 84 DMPAVIGNLSSLKALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGN 163 (600)
Q Consensus 84 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 163 (600)
.|+.+.+.+|.+.... ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 424 ----------~L~~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 0111111222221110 1246777777777764 344 677777777777777776 44566777
Q ss_pred CCCCCEEEecCCCCcccCCccccCCCCCcEEeccccccccCC-CccccCCCCCcEEEecCCcCCCCCch---hccCCCCC
Q 040154 164 LTSLKRLSLESCSFLGKLPPSVGNLTQLQWLGLASNNFSGNL-PSTIGNLRSLETLDISSCNFSGPIPS---SLRNLTQL 239 (600)
Q Consensus 164 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L 239 (600)
+++|+.|++++|.+++ +| .+..+++|++|++++|++++.. |..+..+++|+.|++++|.+++..+. .+..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 7777777777777766 34 6777777777777777777665 67777777777777777777655432 23446777
Q ss_pred CEEEc
Q 040154 240 SCLDL 244 (600)
Q Consensus 240 ~~L~l 244 (600)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 77753
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.8e-15 Score=135.12 Aligned_cols=130 Identities=30% Similarity=0.379 Sum_probs=89.8
Q ss_pred cEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCcc-ccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccC
Q 040154 24 IYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPS-SIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK 102 (600)
Q Consensus 24 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 102 (600)
++++++++.++ .+|..+. .++++|++++|.+++..+. .++.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67778777776 3444333 2777777777777755443 367777777777777777766677777777777777777
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCc
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 156 (600)
|++.+..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777766666677777777777777777766666666677777777776666543
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=6.8e-16 Score=133.18 Aligned_cols=128 Identities=24% Similarity=0.262 Sum_probs=93.2
Q ss_pred CCCCcEEECCCCCCC-CchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEE
Q 040154 20 LSKLIYLDLSSNQLS-GEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKAL 98 (600)
Q Consensus 20 l~~L~~L~Ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 98 (600)
.++|++|++++|.++ +..|..+..+++|++|++++|.+++. ..++++++|++|++++|.+.+..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888877 56666777788888888888887754 567778888888888888776667777777788888
Q ss_pred EccCccCCCC-cchhcCCCCCCCEEEccCCccccccC---cccCCCCCCCEEEcc
Q 040154 99 VLSKTNFSSD-LPAFIGNLPSLEILDLSGNKISGELP---DFFGNLPSLEELDLS 149 (600)
Q Consensus 99 ~L~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 149 (600)
++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888877663 23667777777777777777765444 356666777777664
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=4.6e-16 Score=134.26 Aligned_cols=131 Identities=22% Similarity=0.226 Sum_probs=91.5
Q ss_pred cCCCCeeeCCCCccc-ccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcE
Q 040154 404 LNFLEGLDLSRNNLS-GLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEF 482 (600)
Q Consensus 404 ~~~L~~L~L~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 482 (600)
.++++.|++++|.++ +.+|..+..++. |++|++++|++++. ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEE-LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTT-CCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCC-CcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 456777777777776 566666666664 77777777777655 56777777888888888877666766777778888
Q ss_pred EeCCCCccccc-CCcccCCCCCCCEEEccCccceeecCC-CCCCCCCCcceEEEccC
Q 040154 483 LDLGNNQISDT-FPSWLGALPNLNILILQSNKFHGIIRE-PGTDCGFPKLRIIDISS 537 (600)
Q Consensus 483 L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~l~~ 537 (600)
|++++|++++. .+..+..+++|++|++++|++++..+. ...+..+++|+.||+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888877764 335677778888888888877766320 01235567777777753
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=6.5e-15 Score=132.69 Aligned_cols=110 Identities=26% Similarity=0.313 Sum_probs=94.8
Q ss_pred CCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEe
Q 040154 405 NFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLD 484 (600)
Q Consensus 405 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 484 (600)
+.|+.|++++|.++ .+|..+..++. |++|++++|+++++.+..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~-L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccC-CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 46788888888887 56677777775 99999999999888888888999999999999999988888899999999999
Q ss_pred CCCCcccccCCcccCCCCCCCEEEccCcccee
Q 040154 485 LGNNQISDTFPSWLGALPNLNILILQSNKFHG 516 (600)
Q Consensus 485 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 516 (600)
|++|+++.+.+..|..+++|+.|+|++|++..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999988887788899999999999998864
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=4.5e-15 Score=130.81 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=96.1
Q ss_pred CceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
.+++++++|+++. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 6677888887764 44433 37788889999998888888899999999999999999988888889999999999999
Q ss_pred ccceeecCCCCCCCCCCcceEEEccCCcCcccCC-hhhHhccc
Q 040154 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP-SKYFQCWN 553 (600)
Q Consensus 512 n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~ 553 (600)
|+++++.+.. +..+++|+.|++++|++.|.++ ..++..|-
T Consensus 88 N~l~~~~~~~--~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l 128 (170)
T 3g39_A 88 NQLKSIPRGA--FDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128 (170)
T ss_dssp SCCCCCCTTT--TTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred CccCEeCHHH--hcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence 9999875443 4778999999999999999986 66666664
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=4.1e-16 Score=169.54 Aligned_cols=191 Identities=23% Similarity=0.212 Sum_probs=106.9
Q ss_pred CCCcEEECCCCCCCCchhhhhcCCCCCCEE-----EccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCC
Q 040154 21 SKLIYLDLSSNQLSGEIPASIGNLGSLKEL-----DLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSL 95 (600)
Q Consensus 21 ~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L-----~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 95 (600)
++++.|+|.++.+... +..+-....|+.+ +++.|.+. ..+..+..+++|++|+|++|.+. .++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5678888888877742 3333223333332 23334444 55677888888888888888887 555556688888
Q ss_pred CEEEccCccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCCCCCEEEecCC
Q 040154 96 KALVLSKTNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLTSLKRLSLESC 175 (600)
Q Consensus 96 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 175 (600)
++|+|++|.++ .+|..+.++++|+.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88888888888 56777888888888888888888 56778888888888888888887 44666888888888888888
Q ss_pred CCcccCCccccCCC-CCcEEeccccccccCCCccccCCCCCcEEEecCC
Q 040154 176 SFLGKLPPSVGNLT-QLQWLGLASNNFSGNLPSTIGNLRSLETLDISSC 223 (600)
Q Consensus 176 ~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 223 (600)
.+.+..|..+..+. .+..+++++|.+++..|.. |+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 88877776665432 2234678888887665543 445555554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=3.6e-14 Score=126.24 Aligned_cols=131 Identities=25% Similarity=0.291 Sum_probs=87.0
Q ss_pred CcEEECCCCCCCCchhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccC
Q 040154 23 LIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSK 102 (600)
Q Consensus 23 L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 102 (600)
.+.+++++++++.. |..+ .++|++|++++|++++..+..+.++++|++|++++|.+++..+..++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 46777777777643 3222 25777777777777765555667777777777777777666556667777777777777
Q ss_pred ccCCCCcchhcCCCCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCc
Q 040154 103 TNFSSDLPAFIGNLPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGD 156 (600)
Q Consensus 103 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 156 (600)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777666556666677777777777776655444556666666666666665543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=1.6e-14 Score=127.56 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=92.9
Q ss_pred CceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 432 LSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 432 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
-+.+++++|++. .+|..+ .++|+.|+|++|.+++..|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 456777777775 344433 27788888888888877788888888999999999999888777788899999999999
Q ss_pred ccceeecCCCCCCCCCCcceEEEccCCcCcccCC-hhhHhcccc
Q 040154 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP-SKYFQCWNA 554 (600)
Q Consensus 512 n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~ 554 (600)
|+|+++.+.. +..+++|+.|++++|++.|.++ ..++..|..
T Consensus 91 N~l~~l~~~~--~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~ 132 (174)
T 2r9u_A 91 NHLKSIPRGA--FDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132 (174)
T ss_dssp SCCCCCCTTT--TTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred CccceeCHHH--hccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence 9998775432 4678999999999999998886 566666653
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=6.9e-15 Score=130.67 Aligned_cols=137 Identities=17% Similarity=0.144 Sum_probs=107.3
Q ss_pred hhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCC
Q 040154 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNL 480 (600)
Q Consensus 401 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 480 (600)
+.++++|+.|++++|.++. ++. +..+..+|++|++++|++++. ..|..+++|+.|++++|.+++..+..|.++++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4567889999999999984 454 444442499999999999876 678889999999999999997766667899999
Q ss_pred cEEeCCCCcccccCC-cccCCCCCCCEEEccCccceeecCCC--CCCCCCCcceEEEccCCcCcc
Q 040154 481 EFLDLGNNQISDTFP-SWLGALPNLNILILQSNKFHGIIREP--GTDCGFPKLRIIDISSNRFIG 542 (600)
Q Consensus 481 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~l~~N~~~~ 542 (600)
++|++++|+++...+ ..+..+++|+.|++++|++.... .. ..+..+++|+.||+++|+...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999975432 36888999999999999998652 11 013567889999999988764
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.1e-15 Score=163.95 Aligned_cols=154 Identities=27% Similarity=0.303 Sum_probs=119.3
Q ss_pred chhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcchhcCC
Q 040154 36 EIPASIGNLGSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLPAFIGN 115 (600)
Q Consensus 36 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 115 (600)
..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 45788999999999999999998 67777779999999999999998 77888999999999999999998 56888999
Q ss_pred CCCCCEEEccCCccccccCcccCCCCCCCEEEccCCCCCCcchhhcCCCC-CCCEEEecCCCCcccCCccccCCCCCcEE
Q 040154 116 LPSLEILDLSGNKISGELPDFFGNLPSLEELDLSGNQLSGDFSVSTGNLT-SLKRLSLESCSFLGKLPPSVGNLTQLQWL 194 (600)
Q Consensus 116 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 194 (600)
+++|++|+|++|.++ .+|..|..+++|++|++++|.+++..+..+.... ....+++++|.+.+.+|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 999999999999997 6677799999999999999999988877765432 123467888888877665 44556
Q ss_pred ecccc
Q 040154 195 GLASN 199 (600)
Q Consensus 195 ~l~~n 199 (600)
+++.|
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 66666
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.7e-14 Score=126.83 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=98.3
Q ss_pred CCCCCCCCcEEECCCCCCCCchhhhhcCCC-CCCEEEccCCCCCCCCccccCCCCCCCEEEccccCCCCCcchhccCCCC
Q 040154 16 SLGNLSKLIYLDLSSNQLSGEIPASIGNLG-SLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSS 94 (600)
Q Consensus 16 ~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 94 (600)
.+.++++|++|++++|.++.. +. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 467788889999999888854 43 44444 888999998888854 57888888888888888887655555678888
Q ss_pred CCEEEccCccCCCCcc-hhcCCCCCCCEEEccCCccccccCc----ccCCCCCCCEEEccCCCCC
Q 040154 95 LKALVLSKTNFSSDLP-AFIGNLPSLEILDLSGNKISGELPD----FFGNLPSLEELDLSGNQLS 154 (600)
Q Consensus 95 L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~n~i~ 154 (600)
|++|++++|.+....+ ..+..+++|+.|++++|.++. .+. .+..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888864322 267778888888888888763 343 2666777777777766543
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=1.8e-12 Score=131.09 Aligned_cols=132 Identities=12% Similarity=0.171 Sum_probs=79.1
Q ss_pred hhhhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcC
Q 040154 398 APWICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNC 477 (600)
Q Consensus 398 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~ 477 (600)
...|.+++.|+.+.+.++... ....+|.++.. |+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.+|
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~-L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPA-LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTT-CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEecccccce-ecCcccccccc-cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 445777777888777655433 44556666664 7777775 3455555667777777777777654 554556677777
Q ss_pred CCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCc
Q 040154 478 SNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNR 539 (600)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~ 539 (600)
++|+++.+..+ ++.+...+|.++++|+.+++.++..... .+.....|+.+.+..|.
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCCCC---------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccCCCCEEEeCCCC
Confidence 77777777543 6656666777777777777777654321 12345566666665554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.7e-13 Score=120.64 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=94.9
Q ss_pred CCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCC
Q 040154 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486 (600)
Q Consensus 407 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 486 (600)
.+.+++++|.++. +|..+. .+|++|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 5789999999984 555442 369999999999999889999999999999999999998888889999999999999
Q ss_pred CCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 487 NNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 487 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
+|+++++.+..|..+++|+.|+|++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999988888899999999999999988643
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=4.2e-12 Score=128.34 Aligned_cols=108 Identities=14% Similarity=0.235 Sum_probs=72.4
Q ss_pred hhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCC
Q 040154 400 WICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSN 479 (600)
Q Consensus 400 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 479 (600)
.|.+++.|+.+++. +.++.....+|.++.. |+.+.|..+ ++.+...+|.++.+|+.+.|..+ ++.+...+|.+|++
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~-L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCIS-LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCC-cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 46667777877775 3455455567777774 888888754 65566778999999999999654 66566788999999
Q ss_pred CcEEeCCCCcccccCCcccCCCCCCCEEEccCccc
Q 040154 480 LEFLDLGNNQISDTFPSWLGALPNLNILILQSNKF 514 (600)
Q Consensus 480 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 514 (600)
|+.+++.++.... ..+....+|+.+.+..+.+
T Consensus 359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 9999999886542 3566778888888876654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=9.5e-16 Score=139.16 Aligned_cols=135 Identities=23% Similarity=0.297 Sum_probs=66.1
Q ss_pred cCCCCeeeCCCCcccccCCh------hhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcC
Q 040154 404 LNFLEGLDLSRNNLSGLLPH------CLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNC 477 (600)
Q Consensus 404 ~~~L~~L~L~~n~i~~~~~~------~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~ 477 (600)
...++.++++++.+++..|. .+..++. |++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~-L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKA-CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTT-CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCC-CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 34444455555554444443 4444443 5555555555544 23 4455555555555555555 334444445
Q ss_pred CCCcEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCC
Q 040154 478 SNLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLP 545 (600)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~ 545 (600)
++|++|++++|+++++ | .+..+++|+.|++++|++++.... ..+..+++|+.|++++|++.+.+|
T Consensus 93 ~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 93 DTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCCccccccc
Confidence 5555555555555543 1 344455555555555555543210 011344555555555555554433
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=7.6e-16 Score=139.82 Aligned_cols=154 Identities=25% Similarity=0.231 Sum_probs=123.5
Q ss_pred CCCcEEEcccCcccccChh------hhhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCC
Q 040154 381 PRTRNYLISNNSLIGGIAP------WICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVE 454 (600)
Q Consensus 381 ~~l~~l~l~~n~~~~~~~~------~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 454 (600)
..++.+++..+.+.+..+. .+..+++|++|++++|.+++ +| .+..++. |++|++++|+++ .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~-L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMEN-LRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTT-CCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCC-CCEEECCCCCcc-cccchhhcCC
Confidence 3455555666666666554 89999999999999999996 56 7888885 999999999998 4567777789
Q ss_pred CccEEEccCCccccccCcchhcCCCCcEEeCCCCcccccCC-cccCCCCCCCEEEccCccceeecCCC--------CCCC
Q 040154 455 WLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLGNNQISDTFP-SWLGALPNLNILILQSNKFHGIIREP--------GTDC 525 (600)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~~ 525 (600)
+|+.|++++|.+++. | .+.++++|++|++++|++++..+ ..+..+++|++|++++|++.+..+.. ..+.
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 999999999999964 4 68899999999999999986543 57889999999999999998775432 0124
Q ss_pred CCCcceEEEccCCcCcc
Q 040154 526 GFPKLRIIDISSNRFIG 542 (600)
Q Consensus 526 ~~~~L~~L~l~~N~~~~ 542 (600)
.+++|+.|| +|+++.
T Consensus 172 ~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HCSSCSEEC--CGGGTT
T ss_pred hCCCcEEEC--CcccCH
Confidence 577888887 666653
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.2e-13 Score=119.28 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=93.8
Q ss_pred CCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCC
Q 040154 407 LEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486 (600)
Q Consensus 407 L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 486 (600)
-+.+++++|.++ .+|..+. .+|++|++++|++++..|..|.++++|+.|+|++|++++..+..|.++++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 368899999987 5565443 359999999999998889999999999999999999998777778999999999999
Q ss_pred CCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 487 NNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 487 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
+|+|+++.+..|..+++|+.|+|++|++...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999988888899999999999999998743
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=5.1e-13 Score=132.81 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=81.4
Q ss_pred eEECCCC-ccccccCccccCCCCccEEEccC-CccccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccC
Q 040154 434 ILNLQHN-KFFGTIPQTFLGVEWLRMIDLSD-NLLQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQS 511 (600)
Q Consensus 434 ~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 511 (600)
.++++++ ++++ +|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|+|+++.|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 6653 444 66677777777775 777766666777777777777777777777777777777777777777
Q ss_pred ccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccccc
Q 040154 512 NKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNAM 555 (600)
Q Consensus 512 n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~l 555 (600)
|+|+++.+..+ ..++ |+.|++++|++.|.|+..||..|...
T Consensus 90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~ 130 (347)
T 2ifg_A 90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQRWEEE 130 (347)
T ss_dssp SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHHHHHHT
T ss_pred CccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHHHHHHh
Confidence 77776644333 3333 78888888888888877777777543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=5.5e-14 Score=140.07 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=82.8
Q ss_pred CCCCEEEccCCCCCCCCcccc----C-CCCCCCEEEccccCCCCCcchhc-cCCCCCCEEEccCccCCCCcchhc-----
Q 040154 45 GSLKELDLSTNELSGRLPSSI----G-NLSSLEKLDLSLNVFSGDMPAVI-GNLSSLKALVLSKTNFSSDLPAFI----- 113 (600)
Q Consensus 45 ~~L~~L~l~~~~i~~~~~~~l----~-~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~----- 113 (600)
++|++|++++|.+++.....+ . ..++|++|++++|.+.......+ ..+++|++|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 455555555555543222222 1 12455666666655543222222 223455666666665554222222
Q ss_pred CCCCCCCEEEccCCccccc----cCcccCCCCCCCEEEccCCCCCCcc----hhhcCCCCCCCEEEecCCCCcccC----
Q 040154 114 GNLPSLEILDLSGNKISGE----LPDFFGNLPSLEELDLSGNQLSGDF----SVSTGNLTSLKRLSLESCSFLGKL---- 181 (600)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~~~~~~---- 181 (600)
...++|++|++++|.+++. ++.++..+++|++|++++|.+.+.. ...+...++|++|++++|.++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345666666666665431 2223345566666666666655422 334455566777777776665432
Q ss_pred CccccCCCCCcEEeccccccccCCC
Q 040154 182 PPSVGNLTQLQWLGLASNNFSGNLP 206 (600)
Q Consensus 182 ~~~l~~l~~L~~L~l~~n~l~~~~~ 206 (600)
...+...+.|++|++++|.+++...
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHH
Confidence 2233445677777777777664433
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.4e-13 Score=137.07 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=88.6
Q ss_pred CCCcEEEcccCcccccChhhhhcc-----CCCCeeeCCCCcccccCChhhhh-ccccCceEECCCCccccccCccc----
Q 040154 381 PRTRNYLISNNSLIGGIAPWICNL-----NFLEGLDLSRNNLSGLLPHCLGN-ISNHLSILNLQHNKFFGTIPQTF---- 450 (600)
Q Consensus 381 ~~l~~l~l~~n~~~~~~~~~~~~~-----~~L~~L~L~~n~i~~~~~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~---- 450 (600)
+.++.+++++|.++......+... +.|++|+|++|.+++.....+.. +. +|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHH
Confidence 455566666666554433333322 56777777777665433333332 33 36777777776654333222
Q ss_pred -cCCCCccEEEccCCccccc----cCcchhcCCCCcEEeCCCCcccccC----CcccCCCCCCCEEEccCccceeecCCC
Q 040154 451 -LGVEWLRMIDLSDNLLQGR----IPRSLVNCSNLEFLDLGNNQISDTF----PSWLGALPNLNILILQSNKFHGIIREP 521 (600)
Q Consensus 451 -~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~ 521 (600)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.|++.. +..+...++|+.|+|++|.|++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2346677777777766542 2333455667777777777765432 344555667777777777765432111
Q ss_pred C--CCCCCCcceEEEccCCcCcc
Q 040154 522 G--TDCGFPKLRIIDISSNRFIG 542 (600)
Q Consensus 522 ~--~~~~~~~L~~L~l~~N~~~~ 542 (600)
+ .....+.|+.||+++|++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 1 01234567777777776653
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.1e-11 Score=119.89 Aligned_cols=103 Identities=24% Similarity=0.285 Sum_probs=78.0
Q ss_pred eeeCCCC-cccccCChhhhhccccCceEECCC-CccccccCccccCCCCccEEEccCCccccccCcchhcCCCCcEEeCC
Q 040154 409 GLDLSRN-NLSGLLPHCLGNISNHLSILNLQH-NKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNLEFLDLG 486 (600)
Q Consensus 409 ~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 486 (600)
.++.+++ +++ .+|. +..+.. |++|+|++ |++.++.+..|.++++|+.|+|++|.+++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~-L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSC-CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCC-eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577776 676 3555 666664 88888875 88877777778888888888888888887777778888888888888
Q ss_pred CCcccccCCcccCCCCCCCEEEccCccce
Q 040154 487 NNQISDTFPSWLGALPNLNILILQSNKFH 515 (600)
Q Consensus 487 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 515 (600)
+|+|+++.+..|..++ |+.|+|++|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888877776676665 888888888775
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.21 E-value=1.5e-09 Score=109.05 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=61.1
Q ss_pred hhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCC
Q 040154 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNL 480 (600)
Q Consensus 401 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 480 (600)
|.++..|+.+.+..+ ++.....++..+.. |+.+.+..+ +..+....|.++.+|+.+++.++.++.+...+|.+|++|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~-l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTA-LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTT-CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeeh-hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 334445555555443 33233344444443 555555432 333444556666666666666666655555666666666
Q ss_pred cEEeCCCCcccccCCcccCCCCCCCEEEccCccceee
Q 040154 481 EFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGI 517 (600)
Q Consensus 481 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 517 (600)
+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 66666543 55555566666666666666543 4444
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=5e-09 Score=105.22 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=81.6
Q ss_pred hhccCCCCeeeCCCCcccccCChhhhhccccCceEECCCCccccccCccccCCCCccEEEccCCccccccCcchhcCCCC
Q 040154 401 ICNLNFLEGLDLSRNNLSGLLPHCLGNISNHLSILNLQHNKFFGTIPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCSNL 480 (600)
Q Consensus 401 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 480 (600)
+..+..|+.+.+..+ +......++..+.. |+.+.+..+ ++.+....|.++.+|+.+.+..+ +......+|.+|++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSS-CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCcc-ceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 334455555555433 22233445555553 666666554 44455556666666776666543 443445566667777
Q ss_pred cEEeCCCCcccccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhccc
Q 040154 481 EFLDLGNNQISDTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWN 553 (600)
Q Consensus 481 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 553 (600)
+.+++.++.++.+...+|.++.+|+.+.|..+ +..+. ..+|.++.+|+.+.+..+ ++ .+...+|.++.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ--VYAFKNCKALSTISYPKS-IT-LIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCCCCCCTT-CC-EECTTTTTTSS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH--HHHhhCCCCCCEEEECCc-cC-EEchhHhhCCC
Confidence 77777666666666666666777777776543 55552 334456666666666544 32 44445565554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=1.3e-09 Score=107.49 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=52.6
Q ss_pred CCCCCCEEEecCCCCcccCCccc---cCCCCCcEEeccccccccCC----CccccCCCCCcEEEecCCcCCCCCchhccC
Q 040154 163 NLTSLKRLSLESCSFLGKLPPSV---GNLTQLQWLGLASNNFSGNL----PSTIGNLRSLETLDISSCNFSGPIPSSLRN 235 (600)
Q Consensus 163 ~~~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 235 (600)
.+++|+.|++.+|.+.+..+..+ ..++.|++|+++.|.+.+.. +..+..+++|+.|+++.|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46777777777777654322222 24677888888888776532 223345678888888888776554444443
Q ss_pred -CCCCCEEEcCCCc
Q 040154 236 -LTQLSCLDLSRNH 248 (600)
Q Consensus 236 -l~~L~~L~l~~n~ 248 (600)
+ ..+++++.+.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=9.3e-10 Score=108.49 Aligned_cols=180 Identities=15% Similarity=0.195 Sum_probs=102.2
Q ss_pred hhcCCCCCCEEEccCCCCC---------CCCccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEccCccCCCCcc
Q 040154 40 SIGNLGSLKELDLSTNELS---------GRLPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLSKTNFSSDLP 110 (600)
Q Consensus 40 ~~~~l~~L~~L~l~~~~i~---------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 110 (600)
+..++++|+.|.+.+.... +.+...+..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence 3445566666666543221 123334456677777777666211 1122 22 6777777777766654332
Q ss_pred hhcC--CCCCCCEEEccCC--ccccc-----cCccc--CCCCCCCEEEccCCCCCCcchhhc---CCCCCCCEEEecCCC
Q 040154 111 AFIG--NLPSLEILDLSGN--KISGE-----LPDFF--GNLPSLEELDLSGNQLSGDFSVST---GNLTSLKRLSLESCS 176 (600)
Q Consensus 111 ~~~~--~~~~L~~L~l~~~--~~~~~-----~~~~l--~~l~~L~~L~l~~n~i~~~~~~~~---~~~~~L~~L~l~~n~ 176 (600)
..+. .+|+|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+.+.....+ ..+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3332 5677777777531 11110 11122 246788888888887764333222 246788888888888
Q ss_pred CcccC----CccccCCCCCcEEeccccccccCCCccccC-CCCCcEEEecCCc
Q 040154 177 FLGKL----PPSVGNLTQLQWLGLASNNFSGNLPSTIGN-LRSLETLDISSCN 224 (600)
Q Consensus 177 ~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~~n~ 224 (600)
+.+.. +..+..+++|+.|++++|.+++.....+.. + ...++++.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 76642 223345688999999888877543333332 2 3567777765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=3.8e-09 Score=93.91 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=61.6
Q ss_pred hhhhcCCCCCCEEEccCC-CCCCC----CccccCCCCCCCEEEccccCCCCC----cchhccCCCCCCEEEccCccCCCC
Q 040154 38 PASIGNLGSLKELDLSTN-ELSGR----LPSSIGNLSSLEKLDLSLNVFSGD----MPAVIGNLSSLKALVLSKTNFSSD 108 (600)
Q Consensus 38 ~~~~~~l~~L~~L~l~~~-~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~ 108 (600)
...+...++|++|+|++| .+.+. +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344455555555655555 55421 233344555566666666655432 222334445566666666665542
Q ss_pred ----cchhcCCCCCCCEEEc--cCCccccc----cCcccCCCCCCCEEEccCCCCC
Q 040154 109 ----LPAFIGNLPSLEILDL--SGNKISGE----LPDFFGNLPSLEELDLSGNQLS 154 (600)
Q Consensus 109 ----~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~ 154 (600)
+...+...+.|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555566666666 55666532 2233445566777777666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=6.3e-09 Score=92.51 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=45.4
Q ss_pred ChhhhhccCCCCeeeCCCC-cccccCChh----hhhccccCceEECCCCccccc----cCccccCCCCccEEEccCCccc
Q 040154 397 IAPWICNLNFLEGLDLSRN-NLSGLLPHC----LGNISNHLSILNLQHNKFFGT----IPQTFLGVEWLRMIDLSDNLLQ 467 (600)
Q Consensus 397 ~~~~~~~~~~L~~L~L~~n-~i~~~~~~~----~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~ 467 (600)
+...+...+.|++|+|++| .+....... +...+ +|++|+|++|++.+. +...+...++|++|+|++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445566777888888877 776432222 22223 366666666655431 1222333344555555555544
Q ss_pred cc----cCcchhcCCCCcEEeC--CCCccc
Q 040154 468 GR----IPRSLVNCSNLEFLDL--GNNQIS 491 (600)
Q Consensus 468 ~~----~~~~l~~~~~L~~L~L--s~n~l~ 491 (600)
.. +...+...++|++|+| ++|.|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 32 1233344444444444 444443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=4.4e-08 Score=84.51 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=57.0
Q ss_pred eecCcCCCCCCCCcEEECCCCCCCCchhhhhcCCCCCCEEEccCCC-CCCCCccccCCC----CCCCEEEccccC-CCCC
Q 040154 11 GGIPSSLGNLSKLIYLDLSSNQLSGEIPASIGNLGSLKELDLSTNE-LSGRLPSSIGNL----SSLEKLDLSLNV-FSGD 84 (600)
Q Consensus 11 ~~l~~~~~~l~~L~~L~Ls~~~l~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l----~~L~~L~l~~n~-~~~~ 84 (600)
..+|.....-..|++||+++|.+++.....+.+|++|++|+|++|. |++..-..++.+ ++|++|++++|. ++..
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3455433333457777777777776555666777777777777774 554433444443 357777777663 5544
Q ss_pred cchhccCCCCCCEEEccCcc
Q 040154 85 MPAVIGNLSSLKALVLSKTN 104 (600)
Q Consensus 85 ~~~~~~~l~~L~~L~L~~n~ 104 (600)
.-..++.+++|++|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 44555666667777666665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=3.3e-08 Score=92.23 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=52.7
Q ss_pred hcCCCCcEEeCCCCccccc--CCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCCh------
Q 040154 475 VNCSNLEFLDLGNNQISDT--FPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPS------ 546 (600)
Q Consensus 475 ~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~------ 546 (600)
.++++|++|+|++|+|+++ +|..+..+++|+.|+|++|+|.+... ...+..+ +|+.|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 4566777777777777663 33455567777777777777766511 1111223 788888888888776652
Q ss_pred hhHhccccceeec
Q 040154 547 KYFQCWNAMQVVN 559 (600)
Q Consensus 547 ~~~~~~~~l~~~~ 559 (600)
..+..++.|+.++
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3466677777765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=7.4e-07 Score=83.06 Aligned_cols=75 Identities=31% Similarity=0.388 Sum_probs=37.7
Q ss_pred CceEECCCCccccc--cCccccCCCCccEEEccCCccccccCcchhcCC--CCcEEeCCCCcccccCC-------cccCC
Q 040154 432 LSILNLQHNKFFGT--IPQTFLGVEWLRMIDLSDNLLQGRIPRSLVNCS--NLEFLDLGNNQISDTFP-------SWLGA 500 (600)
Q Consensus 432 L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~~-------~~~~~ 500 (600)
|++|+|++|+++++ ++..+..+++|+.|+|++|.+.+. ..+..++ +|++|+|++|.+.+..| ..+..
T Consensus 172 L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 55555555555442 223444555555555555555543 1222222 56666666666654333 23445
Q ss_pred CCCCCEEE
Q 040154 501 LPNLNILI 508 (600)
Q Consensus 501 l~~L~~L~ 508 (600)
+|+|+.||
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 66666654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=3e-07 Score=79.23 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCCCEEEccCCCCCCCCccccCCCCCCCEEEccccC-CCCCcchhccCC----CCCCEEEccCcc-CCCCcchhcCCCCC
Q 040154 45 GSLKELDLSTNELSGRLPSSIGNLSSLEKLDLSLNV-FSGDMPAVIGNL----SSLKALVLSKTN-FSSDLPAFIGNLPS 118 (600)
Q Consensus 45 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~~~~ 118 (600)
.+|++||+++|.|++.--..+..|++|++|+|++|. ++...-..++.+ ++|++|++++|. +++..-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666666665444555666666666666663 443333334442 346666666553 44332334445555
Q ss_pred CCEEEccCCc
Q 040154 119 LEILDLSGNK 128 (600)
Q Consensus 119 L~~L~l~~~~ 128 (600)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.87 E-value=1.6e-05 Score=65.35 Aligned_cols=70 Identities=17% Similarity=0.308 Sum_probs=52.7
Q ss_pred cEEeCCCCccc-ccCCcccCCCCCCCEEEccCccceeecCCCCCCCCCCcceEEEccCCcCcccCChhhHhcccc
Q 040154 481 EFLDLGNNQIS-DTFPSWLGALPNLNILILQSNKFHGIIREPGTDCGFPKLRIIDISSNRFIGKLPSKYFQCWNA 554 (600)
Q Consensus 481 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 554 (600)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+. .+..+++|+.|+|++||+.|.|...||..|-.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPG--LLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTT--TGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChh--hhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 36777777776 23343322 4688888888888877543 34678899999999999999999999988854
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=2.4e-05 Score=68.74 Aligned_cols=86 Identities=8% Similarity=0.043 Sum_probs=39.8
Q ss_pred CCccEEEccCCccccc----cCcchhcCCCCcEEeCCCCccccc----CCcccCCCCCCCEEEccCc---cceeecCCC-
Q 040154 454 EWLRMIDLSDNLLQGR----IPRSLVNCSNLEFLDLGNNQISDT----FPSWLGALPNLNILILQSN---KFHGIIREP- 521 (600)
Q Consensus 454 ~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n---~l~~~~~~~- 521 (600)
+.|+.|+|++|.+... +...+..-++|++|+|++|.|.+. +.+.+...+.|++|+|++| .+.......
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 3444444444444422 223344455666666666666432 2234445556666666544 222210000
Q ss_pred -CCCCCCCcceEEEccCCc
Q 040154 522 -GTDCGFPKLRIIDISSNR 539 (600)
Q Consensus 522 -~~~~~~~~L~~L~l~~N~ 539 (600)
-.....+.|+.|+++.|.
T Consensus 150 a~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCCcCeEeccCCC
Confidence 011234567777776554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=4.8e-05 Score=66.84 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=59.5
Q ss_pred hhhcCCCCCCEEEccCC-CCCC----CCccccCCCCCCCEEEccccCCCCC----cchhccCCCCCCEEEccCccCCC--
Q 040154 39 ASIGNLGSLKELDLSTN-ELSG----RLPSSIGNLSSLEKLDLSLNVFSGD----MPAVIGNLSSLKALVLSKTNFSS-- 107 (600)
Q Consensus 39 ~~~~~l~~L~~L~l~~~-~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~-- 107 (600)
..+..-+.|++|+|+++ .|.+ .+.+++..-+.|+.|+|++|.+... +..++..-+.|++|+|++|.+..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33444455666666653 5542 1333445555666666666655432 22333344566666666666654
Q ss_pred --CcchhcCCCCCCCEEEccCCc---ccc----ccCcccCCCCCCCEEEccCCC
Q 040154 108 --DLPAFIGNLPSLEILDLSGNK---ISG----ELPDFFGNLPSLEELDLSGNQ 152 (600)
Q Consensus 108 --~~~~~~~~~~~L~~L~l~~~~---~~~----~~~~~l~~l~~L~~L~l~~n~ 152 (600)
.+.+++..-+.|++|+++++. +.. .+..++..-++|+.|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 223445555667777776542 221 122344555677777776554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.00083 Score=55.01 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=18.7
Q ss_pred CCcEEeCCCCcccccCCcccCCCCCCCEEEccCccc
Q 040154 479 NLEFLDLGNNQISDTFPSWLGALPNLNILILQSNKF 514 (600)
Q Consensus 479 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 514 (600)
+|++|+|++|+|+.+.+..|..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555544444555555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.11 E-value=3.5 Score=31.29 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=18.1
Q ss_pred CccccCCCCCCCEEEccccCCCCCcchhccCCCCCCEEEcc
Q 040154 61 LPSSIGNLSSLEKLDLSLNVFSGDMPAVIGNLSSLKALVLS 101 (600)
Q Consensus 61 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 101 (600)
...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344444444554444433 333444444445555544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.64 E-value=5.6 Score=30.14 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=25.8
Q ss_pred cccccCcchhcCCCCcEEeCCCCcccccCCcccCCCCCCCEEEccCc
Q 040154 466 LQGRIPRSLVNCSNLEFLDLGNNQISDTFPSWLGALPNLNILILQSN 512 (600)
Q Consensus 466 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 512 (600)
++.+...+|.+|++|+.+.+-.+ ++.+...+|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44444455666666666666543 34455556666666666666544
Done!