Query 040158
Match_columns 430
No_of_seqs 215 out of 1297
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-128 4E-133 978.6 40.1 427 2-430 77-508 (524)
2 PLN02849 beta-glucosidase 100.0 2E-120 5E-125 944.9 41.8 413 4-430 67-482 (503)
3 PLN02814 beta-glucosidase 100.0 3E-120 7E-125 944.1 42.4 413 4-430 65-482 (504)
4 PLN02998 beta-glucosidase 100.0 3E-120 7E-125 942.8 41.2 412 6-430 72-487 (497)
5 TIGR01233 lacG 6-phospho-beta- 100.0 2E-116 4E-121 911.3 42.5 402 6-430 43-463 (467)
6 PRK13511 6-phospho-beta-galact 100.0 2E-116 5E-121 913.1 42.2 405 6-430 44-465 (469)
7 COG2723 BglB Beta-glucosidase/ 100.0 1E-116 3E-121 886.6 35.9 402 2-429 45-451 (460)
8 PRK09593 arb 6-phospho-beta-gl 100.0 9E-116 2E-120 908.0 42.3 397 7-429 64-471 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 4E-115 8E-120 903.0 43.1 397 7-429 58-470 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 3E-116 7E-121 912.0 31.6 405 2-429 44-451 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 1E-113 2E-118 891.5 43.0 396 7-429 60-471 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1E-113 3E-118 889.5 42.8 397 7-429 62-467 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4E-111 8E-116 865.1 39.4 387 3-424 41-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 3.6E-13 7.8E-18 130.1 24.2 251 37-423 1-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.3 7.9E-12 1.7E-16 127.4 9.4 109 16-130 10-141 (374)
16 PF00150 Cellulase: Cellulase 99.2 6.2E-11 1.3E-15 114.9 9.8 109 17-130 22-134 (281)
17 PF07745 Glyco_hydro_53: Glyco 99.1 9.6E-09 2.1E-13 102.3 22.0 251 19-389 27-297 (332)
18 PRK10150 beta-D-glucuronidase; 99.1 3.3E-08 7.2E-13 107.0 25.8 262 16-429 313-593 (604)
19 COG3693 XynA Beta-1,4-xylanase 98.9 4.2E-07 9.1E-12 88.4 22.9 272 37-429 67-342 (345)
20 PF01229 Glyco_hydro_39: Glyco 98.9 8.3E-08 1.8E-12 101.2 18.9 290 18-426 41-358 (486)
21 PF00331 Glyco_hydro_10: Glyco 98.9 2.2E-07 4.7E-12 92.9 20.4 292 11-426 15-318 (320)
22 COG1874 LacA Beta-galactosidas 98.6 1.3E-07 2.8E-12 101.5 8.5 119 17-141 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.3 7.9E-05 1.7E-09 73.6 19.0 93 14-127 34-132 (298)
24 COG2730 BglC Endoglucanase [Ca 98.0 3E-05 6.5E-10 80.1 9.6 118 12-129 64-193 (407)
25 COG3867 Arabinogalactan endo-1 97.7 0.015 3.3E-07 56.4 21.3 271 19-406 65-361 (403)
26 PF01301 Glyco_hydro_35: Glyco 97.4 0.00058 1.3E-08 68.3 8.8 109 17-128 25-151 (319)
27 PLN03059 beta-galactosidase; P 97.0 0.0038 8.3E-08 68.9 10.6 108 16-127 59-187 (840)
28 PLN02803 beta-amylase 96.6 0.0068 1.5E-07 63.2 8.4 107 16-129 107-252 (548)
29 PLN02801 beta-amylase 96.6 0.011 2.3E-07 61.5 9.7 97 16-117 37-172 (517)
30 PLN02161 beta-amylase 96.6 0.013 2.9E-07 60.8 10.3 111 12-129 113-262 (531)
31 PLN00197 beta-amylase; Provisi 96.6 0.0079 1.7E-07 63.0 8.5 106 17-129 128-272 (573)
32 PF01373 Glyco_hydro_14: Glyco 96.5 0.0055 1.2E-07 62.3 6.6 106 15-128 15-151 (402)
33 PF13204 DUF4038: Protein of u 96.5 0.026 5.7E-07 55.6 11.3 102 21-127 35-156 (289)
34 PLN02905 beta-amylase 96.3 0.023 4.9E-07 60.3 9.8 101 12-117 282-421 (702)
35 PLN02705 beta-amylase 96.3 0.021 4.5E-07 60.4 9.4 98 15-117 267-403 (681)
36 PF14587 Glyco_hydr_30_2: O-Gl 96.2 0.011 2.4E-07 59.8 6.8 102 26-129 57-185 (384)
37 PF14488 DUF4434: Domain of un 95.3 0.17 3.6E-06 45.8 10.1 103 17-128 21-131 (166)
38 PRK09525 lacZ beta-D-galactosi 93.9 0.26 5.6E-06 56.9 9.8 91 14-128 369-464 (1027)
39 PF11790 Glyco_hydro_cc: Glyco 93.8 0.25 5.4E-06 47.3 8.0 67 317-393 151-217 (239)
40 PRK10340 ebgA cryptic beta-D-g 92.9 0.48 1E-05 54.7 9.8 91 14-128 353-451 (1021)
41 COG3250 LacZ Beta-galactosidas 92.4 0.69 1.5E-05 51.8 9.7 90 12-128 317-408 (808)
42 KOG0496 Beta-galactosidase [Ca 92.0 0.38 8.3E-06 51.7 6.8 108 17-128 50-176 (649)
43 PF03198 Glyco_hydro_72: Gluca 91.0 1.1 2.4E-05 44.4 8.4 91 16-127 53-145 (314)
44 COG3664 XynB Beta-xylosidase [ 88.3 0.69 1.5E-05 47.2 4.8 99 25-130 14-117 (428)
45 COG3934 Endo-beta-mannanase [C 84.5 0.53 1.1E-05 48.9 1.8 109 18-129 28-150 (587)
46 smart00642 Aamy Alpha-amylase 82.0 4.7 0.0001 36.3 6.8 65 13-79 16-91 (166)
47 PF07488 Glyco_hydro_67M: Glyc 77.0 23 0.00049 35.1 10.0 87 15-116 56-150 (328)
48 PLN02361 alpha-amylase 73.5 10 0.00022 39.2 7.1 66 13-78 26-96 (401)
49 PF14871 GHL6: Hypothetical gl 70.5 16 0.00035 31.6 6.7 54 20-79 4-65 (132)
50 KOG2233 Alpha-N-acetylglucosam 68.9 27 0.00058 36.7 8.7 113 15-127 77-248 (666)
51 PLN00196 alpha-amylase; Provis 66.4 13 0.00029 38.7 6.3 65 14-78 42-112 (428)
52 PF00332 Glyco_hydro_17: Glyco 66.2 5.6 0.00012 39.7 3.2 82 319-409 212-302 (310)
53 PRK05799 coproporphyrinogen II 65.0 13 0.00028 37.8 5.8 106 17-139 97-204 (374)
54 PF12891 Glyco_hydro_44: Glyco 63.7 13 0.00028 35.6 5.1 22 58-79 24-45 (239)
55 TIGR03581 EF_0839 conserved hy 63.2 26 0.00056 33.0 6.7 75 15-103 134-230 (236)
56 PF12876 Cellulase-like: Sugar 62.9 4.7 0.0001 32.1 1.7 19 110-128 1-22 (88)
57 cd06601 GH31_lyase_GLase GLase 61.3 37 0.0008 34.2 8.1 107 20-134 28-141 (332)
58 PLN02784 alpha-amylase 59.3 28 0.0006 39.5 7.3 66 13-78 518-588 (894)
59 PRK12313 glycogen branching en 59.1 48 0.001 36.4 9.2 98 15-122 169-307 (633)
60 PF00128 Alpha-amylase: Alpha 58.1 20 0.00043 34.4 5.5 59 18-79 6-73 (316)
61 cd07945 DRE_TIM_CMS Leptospira 57.8 28 0.0006 34.2 6.4 84 17-112 75-158 (280)
62 COG5309 Exo-beta-1,3-glucanase 57.8 40 0.00086 32.9 7.2 53 9-79 56-108 (305)
63 COG3589 Uncharacterized conser 57.5 49 0.0011 33.3 7.9 70 21-106 21-90 (360)
64 TIGR01210 conserved hypothetic 57.3 52 0.0011 32.8 8.4 108 19-142 117-229 (313)
65 PF02055 Glyco_hydro_30: O-Gly 56.2 85 0.0018 33.5 10.2 96 322-426 319-418 (496)
66 TIGR02402 trehalose_TreZ malto 55.7 58 0.0013 35.1 9.0 61 15-81 110-185 (542)
67 PRK05402 glycogen branching en 55.5 74 0.0016 35.6 10.0 98 15-122 264-402 (726)
68 PF02638 DUF187: Glycosyl hydr 54.8 62 0.0013 32.2 8.4 101 15-115 18-154 (311)
69 cd06591 GH31_xylosidase_XylS X 54.7 93 0.002 31.0 9.7 113 18-131 26-164 (319)
70 COG1501 Alpha-glucosidases, fa 53.0 57 0.0012 36.8 8.5 101 28-133 294-422 (772)
71 PRK09441 cytoplasmic alpha-amy 52.6 29 0.00064 36.6 6.1 66 13-78 19-101 (479)
72 TIGR02090 LEU1_arch isopropylm 52.1 39 0.00085 34.4 6.6 61 18-79 73-133 (363)
73 PRK05692 hydroxymethylglutaryl 51.9 46 0.001 32.7 6.9 87 17-113 80-167 (287)
74 TIGR02403 trehalose_treC alpha 51.9 29 0.00062 37.4 5.9 67 13-79 24-96 (543)
75 cd06543 GH18_PF-ChiA-like PF-C 51.8 73 0.0016 31.5 8.3 84 23-115 19-104 (294)
76 cd03174 DRE_TIM_metallolyase D 51.2 42 0.00092 31.9 6.5 83 19-115 77-159 (265)
77 PRK09058 coproporphyrinogen II 50.8 51 0.0011 34.5 7.5 106 18-141 162-270 (449)
78 TIGR02630 xylose_isom_A xylose 50.7 2.9E+02 0.0063 28.8 12.4 68 22-98 84-156 (434)
79 cd06602 GH31_MGAM_SI_GAA This 50.6 1E+02 0.0022 31.0 9.3 107 18-129 26-168 (339)
80 cd06593 GH31_xylosidase_YicI Y 50.5 1.2E+02 0.0025 29.9 9.7 106 17-128 25-161 (308)
81 cd06603 GH31_GANC_GANAB_alpha 50.0 86 0.0019 31.5 8.7 110 18-131 26-167 (339)
82 PRK05474 xylose isomerase; Pro 49.1 3E+02 0.0066 28.8 12.3 69 21-98 84-157 (437)
83 cd07948 DRE_TIM_HCS Saccharomy 48.5 29 0.00063 33.6 4.9 60 19-79 74-133 (262)
84 cd07939 DRE_TIM_NifV Streptomy 48.1 26 0.00056 33.7 4.4 82 18-115 71-152 (259)
85 PF03659 Glyco_hydro_71: Glyco 48.1 81 0.0018 32.5 8.2 51 16-78 17-67 (386)
86 PLN02746 hydroxymethylglutaryl 47.9 57 0.0012 33.1 6.9 85 18-112 123-208 (347)
87 PRK10933 trehalose-6-phosphate 47.4 32 0.00069 37.2 5.4 63 13-79 30-102 (551)
88 cd06600 GH31_MGAM-like This fa 47.3 1.3E+02 0.0028 29.9 9.4 108 18-130 26-164 (317)
89 cd06598 GH31_transferase_CtsZ 47.3 1.5E+02 0.0031 29.5 9.8 111 18-130 26-168 (317)
90 PF10566 Glyco_hydro_97: Glyco 47.0 1.2E+02 0.0026 29.7 8.8 102 11-113 27-149 (273)
91 PRK12581 oxaloacetate decarbox 46.8 36 0.00078 35.9 5.5 56 14-84 98-158 (468)
92 PRK14041 oxaloacetate decarbox 46.4 68 0.0015 33.9 7.5 56 14-84 88-148 (467)
93 PLN02447 1,4-alpha-glucan-bran 46.4 44 0.00095 37.5 6.3 94 14-115 248-383 (758)
94 cd06592 GH31_glucosidase_KIAA1 45.8 1.3E+02 0.0027 29.8 9.0 106 18-128 32-167 (303)
95 TIGR00433 bioB biotin syntheta 45.7 58 0.0013 31.7 6.6 55 18-77 122-177 (296)
96 PRK14705 glycogen branching en 44.0 1.4E+02 0.0031 35.5 10.2 97 18-115 767-897 (1224)
97 PRK12858 tagatose 1,6-diphosph 43.9 91 0.002 31.6 7.7 52 22-78 112-163 (340)
98 TIGR01515 branching_enzym alph 43.9 1.6E+02 0.0034 32.3 10.1 95 15-115 155-288 (613)
99 PRK14040 oxaloacetate decarbox 43.5 76 0.0017 34.6 7.5 27 15-41 91-122 (593)
100 PRK04161 tagatose 1,6-diphosph 43.3 1.2E+02 0.0025 30.6 8.1 59 21-84 112-170 (329)
101 TIGR02456 treS_nterm trehalose 43.2 36 0.00079 36.6 5.0 61 15-79 27-97 (539)
102 PRK09505 malS alpha-amylase; R 43.1 51 0.0011 36.6 6.2 65 18-82 232-318 (683)
103 TIGR03234 OH-pyruv-isom hydrox 43.0 80 0.0017 29.8 7.0 68 14-84 82-150 (254)
104 KOG1065 Maltase glucoamylase a 42.7 1.1E+02 0.0024 34.4 8.6 105 20-132 315-454 (805)
105 PRK12399 tagatose 1,6-diphosph 42.5 1.2E+02 0.0025 30.5 8.0 58 22-84 111-168 (324)
106 PRK14706 glycogen branching en 42.5 98 0.0021 34.1 8.3 93 23-115 175-299 (639)
107 cd06599 GH31_glycosidase_Aec37 41.4 2.5E+02 0.0054 27.8 10.4 111 18-129 31-171 (317)
108 PF04646 DUF604: Protein of un 40.6 13 0.00028 35.9 0.9 76 62-140 72-147 (255)
109 TIGR02660 nifV_homocitr homoci 40.2 82 0.0018 32.0 6.8 82 18-115 74-155 (365)
110 COG2951 MltB Membrane-bound ly 40.2 33 0.00071 34.7 3.8 93 318-420 111-224 (343)
111 TIGR00539 hemN_rel putative ox 39.9 74 0.0016 32.2 6.5 92 18-128 99-194 (360)
112 PRK14511 maltooligosyl trehalo 39.6 61 0.0013 36.9 6.2 56 15-78 19-89 (879)
113 cd07938 DRE_TIM_HMGL 3-hydroxy 39.3 1E+02 0.0022 30.1 7.1 85 18-112 75-160 (274)
114 cd07937 DRE_TIM_PC_TC_5S Pyruv 39.2 1.7E+02 0.0037 28.4 8.7 68 18-112 93-160 (275)
115 PTZ00445 p36-lilke protein; Pr 39.2 55 0.0012 30.9 4.9 50 58-111 29-88 (219)
116 cd02874 GH18_CFLE_spore_hydrol 39.0 1.2E+02 0.0025 29.9 7.6 92 14-115 7-103 (313)
117 cd06565 GH20_GcnA-like Glycosy 38.5 1.3E+02 0.0029 29.6 7.9 73 9-88 7-87 (301)
118 COG0821 gcpE 1-hydroxy-2-methy 38.3 2.5E+02 0.0054 28.4 9.4 87 8-110 76-162 (361)
119 PRK11858 aksA trans-homoaconit 38.2 95 0.0021 31.8 7.0 59 19-78 78-136 (378)
120 PF05089 NAGLU: Alpha-N-acetyl 37.0 81 0.0018 31.8 6.0 112 15-128 18-185 (333)
121 cd02803 OYE_like_FMN_family Ol 36.6 2.6E+02 0.0056 27.6 9.7 137 41-201 62-221 (327)
122 TIGR01211 ELP3 histone acetylt 36.5 1.3E+02 0.0029 32.3 7.9 108 18-143 205-317 (522)
123 cd02932 OYE_YqiM_FMN Old yello 36.4 4.5E+02 0.0097 26.2 15.1 41 40-82 61-101 (336)
124 PRK10785 maltodextrin glucosid 36.2 69 0.0015 35.0 5.9 54 18-79 181-247 (598)
125 PRK12568 glycogen branching en 36.2 62 0.0013 36.2 5.5 95 15-115 268-401 (730)
126 PRK12331 oxaloacetate decarbox 35.9 1.4E+02 0.0031 31.4 7.9 52 18-84 98-149 (448)
127 PF03511 Fanconi_A: Fanconi an 35.9 26 0.00057 26.1 1.7 38 40-81 19-56 (64)
128 TIGR02401 trehalose_TreY malto 35.8 75 0.0016 36.0 6.1 56 15-78 15-85 (825)
129 COG1523 PulA Type II secretory 35.5 84 0.0018 35.0 6.3 57 22-78 206-285 (697)
130 PRK03705 glycogen debranching 35.4 91 0.002 34.5 6.6 55 22-79 185-263 (658)
131 TIGR03217 4OH_2_O_val_ald 4-hy 34.8 2.4E+02 0.0051 28.4 9.1 47 18-79 89-135 (333)
132 cd02742 GH20_hexosaminidase Be 34.6 1.3E+02 0.0027 29.8 7.0 64 18-87 18-98 (303)
133 PF02065 Melibiase: Melibiase; 34.2 3.4E+02 0.0073 28.1 10.2 90 18-115 60-183 (394)
134 PRK08599 coproporphyrinogen II 34.0 1.6E+02 0.0034 29.9 7.9 97 17-132 98-198 (377)
135 PRK07379 coproporphyrinogen II 33.2 1.8E+02 0.0039 29.9 8.1 106 17-140 113-221 (400)
136 PF00150 Cellulase: Cellulase 33.0 1.2E+02 0.0026 28.6 6.5 56 60-118 23-78 (281)
137 cd06542 GH18_EndoS-like Endo-b 32.9 1.4E+02 0.0031 28.3 6.9 55 57-115 50-104 (255)
138 cd06545 GH18_3CO4_chitinase Th 32.6 1.2E+02 0.0027 28.8 6.4 73 36-115 27-99 (253)
139 TIGR01212 radical SAM protein, 32.4 1.2E+02 0.0026 30.0 6.4 73 57-142 162-234 (302)
140 PRK13398 3-deoxy-7-phosphohept 32.3 1.8E+02 0.0038 28.3 7.4 72 11-87 36-107 (266)
141 PRK10340 ebgA cryptic beta-D-g 31.7 1.5E+02 0.0033 34.6 8.0 75 333-429 506-600 (1021)
142 PRK12677 xylose isomerase; Pro 31.1 4E+02 0.0088 27.3 10.2 72 17-97 32-104 (384)
143 PF11997 DUF3492: Domain of un 31.0 47 0.001 32.3 3.2 25 318-345 185-209 (268)
144 PF04914 DltD_C: DltD C-termin 30.4 1.8E+02 0.004 25.1 6.4 53 58-117 36-91 (130)
145 PRK14510 putative bifunctional 29.8 67 0.0015 38.2 4.7 59 20-78 191-267 (1221)
146 PLN03153 hypothetical protein; 29.5 44 0.00095 35.6 2.8 69 66-143 326-401 (537)
147 TIGR02100 glgX_debranch glycog 29.5 1.4E+02 0.0031 33.2 7.0 56 22-79 190-266 (688)
148 PLN02960 alpha-amylase 29.5 1.1E+02 0.0024 34.9 6.1 94 14-115 414-549 (897)
149 TIGR01589 A_thal_3526 uncharac 28.8 71 0.0015 23.5 3.0 36 61-107 19-55 (57)
150 PRK05628 coproporphyrinogen II 28.7 2.8E+02 0.006 28.1 8.6 104 17-139 106-213 (375)
151 cd06604 GH31_glucosidase_II_Ma 28.4 3.9E+02 0.0084 26.7 9.5 107 18-130 26-163 (339)
152 TIGR00612 ispG_gcpE 1-hydroxy- 28.4 4E+02 0.0088 26.9 9.2 91 7-114 73-163 (346)
153 PRK00366 ispG 4-hydroxy-3-meth 28.3 3.2E+02 0.0068 27.9 8.5 87 8-110 82-169 (360)
154 cd07943 DRE_TIM_HOA 4-hydroxy- 28.3 2.4E+02 0.0052 27.1 7.7 46 19-79 88-133 (263)
155 cd06570 GH20_chitobiase-like_1 28.0 2.4E+02 0.0052 28.1 7.7 64 18-87 20-94 (311)
156 TIGR00419 tim triosephosphate 27.7 1.7E+02 0.0036 27.4 6.1 44 22-78 74-117 (205)
157 TIGR01108 oadA oxaloacetate de 27.6 2.3E+02 0.005 30.9 8.0 92 19-129 94-205 (582)
158 PF10107 Endonuc_Holl: Endonuc 27.3 52 0.0011 29.3 2.5 40 227-270 72-113 (156)
159 PF07071 DUF1341: Protein of u 27.2 1.3E+02 0.0029 28.1 5.2 45 17-74 136-180 (218)
160 PRK09856 fructoselysine 3-epim 27.2 1.1E+02 0.0023 29.3 5.0 61 14-77 88-148 (275)
161 COG3534 AbfA Alpha-L-arabinofu 27.0 1.6E+02 0.0034 31.0 6.2 96 18-128 50-175 (501)
162 TIGR01232 lacD tagatose 1,6-di 27.0 3.1E+02 0.0067 27.6 8.1 59 21-84 111-169 (325)
163 TIGR00674 dapA dihydrodipicoli 26.8 2.7E+02 0.0058 27.0 7.8 59 49-121 13-71 (285)
164 PLN02389 biotin synthase 26.7 1.9E+02 0.004 29.8 6.8 57 17-78 176-233 (379)
165 cd07947 DRE_TIM_Re_CS Clostrid 26.7 2.2E+02 0.0047 27.9 7.0 61 17-78 75-135 (279)
166 cd07944 DRE_TIM_HOA_like 4-hyd 26.5 1.5E+02 0.0032 28.8 5.8 67 19-115 85-151 (266)
167 PRK14507 putative bifunctional 26.1 1.8E+02 0.004 35.7 7.5 60 15-82 757-833 (1693)
168 PF09585 Lin0512_fam: Conserve 26.0 62 0.0013 27.3 2.6 31 335-376 2-32 (113)
169 PF09713 A_thal_3526: Plant pr 25.8 59 0.0013 23.7 2.1 35 61-106 16-51 (54)
170 cd06568 GH20_SpHex_like A subg 25.7 2.7E+02 0.0059 27.9 7.7 74 9-88 9-102 (329)
171 PRK10426 alpha-glucosidase; Pr 25.4 5.8E+02 0.013 28.2 10.7 108 18-127 223-364 (635)
172 TIGR00542 hxl6Piso_put hexulos 25.1 1.5E+02 0.0033 28.4 5.7 61 15-78 93-153 (279)
173 cd00950 DHDPS Dihydrodipicolin 25.0 2.9E+02 0.0063 26.7 7.7 57 49-119 15-71 (284)
174 cd00311 TIM Triosephosphate is 24.9 2.1E+02 0.0046 27.4 6.5 49 22-79 77-125 (242)
175 PRK07094 biotin synthase; Prov 24.9 1E+02 0.0022 30.5 4.5 57 17-78 127-185 (323)
176 smart00729 Elp3 Elongator prot 24.9 4.7E+02 0.01 22.8 9.4 58 15-77 96-156 (216)
177 PRK05848 nicotinate-nucleotide 24.9 1.2E+02 0.0027 29.6 4.9 47 317-393 166-212 (273)
178 TIGR02635 RhaI_grampos L-rhamn 24.0 5.6E+02 0.012 26.3 9.6 90 8-117 33-131 (378)
179 PRK00042 tpiA triosephosphate 23.7 1.7E+02 0.0037 28.2 5.6 49 22-79 79-127 (250)
180 COG0366 AmyA Glycosidases [Car 23.5 1E+02 0.0022 32.1 4.4 60 20-81 33-102 (505)
181 cd06595 GH31_xylosidase_XylS-l 23.5 2.8E+02 0.0061 27.1 7.3 112 18-130 27-163 (292)
182 COG2515 Acd 1-aminocyclopropan 23.0 7.7E+02 0.017 24.7 11.8 200 18-241 78-294 (323)
183 TIGR02058 lin0512_fam conserve 23.0 78 0.0017 26.8 2.7 30 335-375 2-31 (116)
184 cd07941 DRE_TIM_LeuA3 Desulfob 22.6 1.3E+02 0.0029 29.1 4.7 81 20-112 82-162 (273)
185 PRK13523 NADPH dehydrogenase N 22.4 8E+02 0.017 24.6 11.8 123 50-198 73-217 (337)
186 PF08097 Toxin_26: Conotoxin T 22.3 31 0.00067 16.4 0.1 9 378-386 3-11 (11)
187 cd04733 OYE_like_2_FMN Old yel 22.3 7.8E+02 0.017 24.5 11.8 40 40-81 63-105 (338)
188 PF13812 PPR_3: Pentatricopept 22.2 49 0.0011 20.2 1.1 15 60-74 20-34 (34)
189 PRK11572 copper homeostasis pr 22.1 2.3E+02 0.005 27.3 6.1 42 15-67 72-113 (248)
190 PRK08195 4-hyroxy-2-oxovalerat 21.8 1.1E+02 0.0024 30.8 4.1 68 19-116 91-158 (337)
191 PTZ00445 p36-lilke protein; Pr 21.6 1.9E+02 0.0042 27.3 5.2 55 22-79 35-99 (219)
192 PF11775 CobT_C: Cobalamin bio 21.6 3.3E+02 0.0071 25.8 6.8 65 314-384 117-184 (219)
193 PF01261 AP_endonuc_2: Xylose 21.6 1E+02 0.0022 27.5 3.5 63 15-78 70-132 (213)
194 TIGR02631 xylA_Arthro xylose i 21.5 6.8E+02 0.015 25.7 9.8 98 11-117 27-130 (382)
195 TIGR03471 HpnJ hopanoid biosyn 21.0 1.8E+02 0.0039 30.5 5.6 60 19-84 287-348 (472)
196 PRK06294 coproporphyrinogen II 20.9 4.2E+02 0.0092 26.8 8.2 97 18-131 102-200 (370)
197 PF10566 Glyco_hydro_97: Glyco 20.7 1.5E+02 0.0033 29.0 4.6 69 18-99 108-176 (273)
198 COG2100 Predicted Fe-S oxidore 20.6 3.5E+02 0.0076 27.4 7.0 85 13-111 198-284 (414)
199 PF01055 Glyco_hydro_31: Glyco 20.4 3.4E+02 0.0074 28.0 7.5 109 17-130 44-184 (441)
200 cd00408 DHDPS-like Dihydrodipi 20.3 4.6E+02 0.0099 25.2 8.0 58 49-120 12-69 (281)
201 TIGR02104 pulA_typeI pullulana 20.3 2.4E+02 0.0052 30.8 6.6 23 57-79 228-250 (605)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-128 Score=978.62 Aligned_cols=427 Identities=57% Similarity=1.081 Sum_probs=393.5
Q ss_pred CCCCCCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 040158 2 MFDRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF 81 (430)
Q Consensus 2 ~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 81 (430)
+.+++++|+|||+||+|+|||+|||+||+++||||||||||+|.|...+.+|++||+||+++|++|+++||+|+|||+||
T Consensus 77 ~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHw 156 (524)
T KOG0626|consen 77 ICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHW 156 (524)
T ss_pred cccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 45788899999999999999999999999999999999999999965578999999999999999999999999999999
Q ss_pred CCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChH
Q 040158 82 DPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEP 161 (430)
Q Consensus 82 ~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~ 161 (430)
|+|++|+++||||+|+++++.|.+||+.||++|||+||+|+|||||++++..||..|..|||+|+.+..+|..|+|+++.
T Consensus 157 DlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~ep 236 (524)
T KOG0626|consen 157 DLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEP 236 (524)
T ss_pred CCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHH
Q 040158 162 YIAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIV 241 (430)
Q Consensus 162 ~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l 241 (430)
|+|+||||+|||+||++||+.++..|+|+|||+++..|++|.+++++|.+||+|+.+|..+||++|++.|+||+.|++.+
T Consensus 237 Yiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~v 316 (524)
T KOG0626|consen 237 YIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERV 316 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHh
Confidence 99999999999999999999998889999999999999999999999999999999999999999988999999999999
Q ss_pred hhcCCCCChhhhhhhcCCcceEEeecCccceeccCCC-CCcCCCCcccccccccccccCC-CCCCCCCCCCCccccchHH
Q 040158 242 GKRLPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPP-PNAFQLSYTADRQVNLTTERDG-VPVGSPTALGWLFVHPKGL 319 (430)
Q Consensus 242 ~~~lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~i~P~gl 319 (430)
++|||.||+||.+.|||+.||+||||||+.+|+.... +.+..+.+..|..+.. ..++ .+.++.+...|..++|+||
T Consensus 317 g~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Gl 394 (524)
T KOG0626|consen 317 GSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGL 394 (524)
T ss_pred cccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceee--eecccccccccccccceeeccHHH
Confidence 9999999999999999999999999999999998654 2222334444444433 1122 3556677788999999999
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCC--CCcccccCchhHHHHHHHHHHHHHHHHH-cCCCeeEEEeeeccccccccC
Q 040158 320 QELLLYLKKKYNNPTIYITENGLADDAS--LPLKVALKDSMRIRYLHSHLEYLLKAIK-EGVNVKAYYIWTFWDDFEWDA 396 (430)
Q Consensus 320 ~~~L~~~~~~Y~~p~I~ITENG~~~~~~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~-dGv~v~GY~~WSl~Dn~EW~~ 396 (430)
|++|++++++|++|||||||||+++.+. .+....++|..||+|++.||++|++||. +||||+|||+|||||||||..
T Consensus 395 r~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~ 474 (524)
T KOG0626|consen 395 RKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLD 474 (524)
T ss_pred HHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhc
Confidence 9999999999999999999999998422 2344567999999999999999999995 999999999999999999999
Q ss_pred CCCCceeeEEEcCCCCcccccchhHHHHHHHhcC
Q 040158 397 GYTVRFGITYVDFKNHLRRYLKYSAYWFKMFLLN 430 (430)
Q Consensus 397 Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~ 430 (430)
||+.||||++|||+|.++|+||.|++||+++++.
T Consensus 475 Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 475 GYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred CcccccccEEEeCCCCCcCCchhHHHHHHHHHcC
Confidence 9999999999999867999999999999999873
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.3e-120 Score=944.92 Aligned_cols=413 Identities=43% Similarity=0.856 Sum_probs=368.5
Q ss_pred CCCCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q 040158 4 DRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP 83 (430)
Q Consensus 4 ~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 83 (430)
++.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+
T Consensus 67 ~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~--g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dl 144 (503)
T PLN02849 67 NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGR--GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDH 144 (503)
T ss_pred CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCC
Confidence 34688999999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred chhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHHH
Q 040158 84 PQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYI 163 (430)
Q Consensus 84 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~ 163 (430)
|+||+++||||.|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+......|+.+++.++.++
T Consensus 145 P~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~ 224 (503)
T PLN02849 145 PQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYI 224 (503)
T ss_pred cHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHH
Confidence 99999989999999999999999999999999999999999999999999999999999975421113554555567899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhh
Q 040158 164 AAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGK 243 (430)
Q Consensus 164 a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~ 243 (430)
|+||+++||++||+++|+.++..++++||++++..+++|.+++|+|++||++++++.++||+||++.|+||+.|++.+++
T Consensus 225 a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~ 304 (503)
T PLN02849 225 VGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGS 304 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhc
Confidence 99999999999999999975444789999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChhhhhhhcCCcceEEeecCccceeccCCCCC--cCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHH
Q 040158 244 RLPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPN--AFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQE 321 (430)
Q Consensus 244 ~lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~ 321 (430)
++|.|+++|+++|++++||||||||++.+|+...... ...+.+.. ..+.+....+++|| +|+|+||++
T Consensus 305 ~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~ 374 (503)
T PLN02849 305 RLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMES 374 (503)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHH
Confidence 8999999999999999999999999999997532110 00001100 00112234567999 699999999
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCCCCc
Q 040158 322 LLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGYTVR 401 (430)
Q Consensus 322 ~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~r 401 (430)
+|++++++|++|||+|||||++..++ .++.++|++||+||++||++|++||+|||||+||++|||||||||.+||++|
T Consensus 375 ~L~~~~~rY~~pPi~ITENG~~~~d~--~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~R 452 (503)
T PLN02849 375 VLEYIKQSYGNPPVYILENGTPMKQD--LQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFS 452 (503)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCccCC--CCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCc
Confidence 99999999999889999999998543 3568999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEcCCC-CcccccchhHHHHHHHhcC
Q 040158 402 FGITYVDFKN-HLRRYLKYSAYWFKMFLLN 430 (430)
Q Consensus 402 fGL~~VD~~~-~~~R~pK~S~~~y~~ii~~ 430 (430)
||||+||+++ +++|+||+|++||+++|++
T Consensus 453 fGLi~VD~~~~~~~R~pK~S~~wy~~ii~~ 482 (503)
T PLN02849 453 FGLYSVNFSDPHRKRSPKLSAHWYSAFLKG 482 (503)
T ss_pred cceEEECCCCCCcceecccHHHHHHHHHHh
Confidence 9999999984 4699999999999999974
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3.2e-120 Score=944.08 Aligned_cols=413 Identities=42% Similarity=0.826 Sum_probs=367.2
Q ss_pred CCCCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q 040158 4 DRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP 83 (430)
Q Consensus 4 ~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 83 (430)
+++++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++||+|+++||+|+|||+|||+
T Consensus 65 ~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~--g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 65 NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGR--GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 45688999999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred chhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCC-CCCCCCCCCCChHH
Q 040158 84 PQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNY-VGNCTAGDSATEPY 162 (430)
Q Consensus 84 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~-~~~~~~~~~~~~~~ 162 (430)
|+||+++||||.|+++++.|++||+.||++|||+|++|+|||||++++..||..|.. ||.++.. ...|..+++.++.+
T Consensus 143 P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~ 221 (504)
T PLN02814 143 PQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETY 221 (504)
T ss_pred CHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999985 8865421 11454445556789
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHh
Q 040158 163 IAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVG 242 (430)
Q Consensus 163 ~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~ 242 (430)
+|+||+++|||+||+++|+.++..|+++||++++..+++|++++|+|++||++++++.++||+||++.|+||+.|++.++
T Consensus 222 ~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~ 301 (504)
T PLN02814 222 IAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLG 301 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHh
Confidence 99999999999999999997655678999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChhhhhhhcCCcceEEeecCccceeccCCCCC---cCCCCcccccccccccccCCCCCCCCCCCCCccccchHH
Q 040158 243 KRLPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPN---AFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGL 319 (430)
Q Consensus 243 ~~lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl 319 (430)
+++|.||++|+++|++++||||||||++.+|+..+.+. +....+..+.... ..+..+.+++|| +|+|+||
T Consensus 302 ~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gW-ei~P~Gl 374 (504)
T PLN02814 302 SRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAY------IISAGNSSFFEF-DATPWGL 374 (504)
T ss_pred cCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccc------cCCCCCcCCCCC-eECcHHH
Confidence 89999999999999999999999999999997532110 0000110000000 013346788999 5999999
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCCC
Q 040158 320 QELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGYT 399 (430)
Q Consensus 320 ~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~ 399 (430)
+.+|++++++|++|||+|||||++..+ ++.++|++||+||++||++|++||+|||||+|||+|||||||||.+||+
T Consensus 375 ~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~ 450 (504)
T PLN02814 375 EGILEHIKQSYNNPPIYILENGMPMKH----DSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYT 450 (504)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCC----CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhcccc
Confidence 999999999999988999999999743 4678999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEcCCC-CcccccchhHHHHHHHhcC
Q 040158 400 VRFGITYVDFKN-HLRRYLKYSAYWFKMFLLN 430 (430)
Q Consensus 400 ~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~ 430 (430)
+||||+||||++ +++|+||+|++||+++|+.
T Consensus 451 ~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~ 482 (504)
T PLN02814 451 TSFGMYYVNFSDPGRKRSPKLSASWYTGFLNG 482 (504)
T ss_pred CccceEEECCCCCCcceeeecHHHHHHHHHhc
Confidence 999999999985 4699999999999999963
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=3.1e-120 Score=942.77 Aligned_cols=412 Identities=45% Similarity=0.859 Sum_probs=365.9
Q ss_pred CCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCch
Q 040158 6 STGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQ 85 (430)
Q Consensus 6 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 85 (430)
.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+
T Consensus 72 ~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~--g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 72 AAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGR--GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred CCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 478999999999999999999999999999999999999986 889999999999999999999999999999999999
Q ss_pred hhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCC-CCCCCCCCCChHHHH
Q 040158 86 ALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYV-GNCTAGDSATEPYIA 164 (430)
Q Consensus 86 ~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~a 164 (430)
||+++||||+|+++++.|++||+.||++|||+|++|+|||||++++..||..|.+|||.+.... ..|..+++.++.++|
T Consensus 150 ~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 229 (497)
T PLN02998 150 ALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIA 229 (497)
T ss_pred HHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHH
Confidence 9999899999999999999999999999999999999999999999999999999999754210 126555556778999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhhc
Q 040158 165 AHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGKR 244 (430)
Q Consensus 165 ~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~ 244 (430)
+||+++|||+||++||+.++..|+++||++++..+++|.+++|+|++||++.+++.++||+||++.|+||+.|++.++++
T Consensus 230 ~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~ 309 (497)
T PLN02998 230 VHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSR 309 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcC
Confidence 99999999999999999866567899999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCChhhhhhhcCCcceEEeecCccceeccCCCC-CcCCCCcccccccccccccCCCCCCCCC-CCCCccccchHHHHH
Q 040158 245 LPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPP-NAFQLSYTADRQVNLTTERDGVPVGSPT-ALGWLFVHPKGLQEL 322 (430)
Q Consensus 245 lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~i~P~gl~~~ 322 (430)
+|.||++|+++|++++||||||||++.+|+....+ .+....+..+..... .+.++.+ .++| +|+|+||+.+
T Consensus 310 lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~ 382 (497)
T PLN02998 310 LPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQI 382 (497)
T ss_pred CCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHH
Confidence 99999999999999999999999999999753211 110011101100000 0112233 3778 6999999999
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCCCCce
Q 040158 323 LLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGYTVRF 402 (430)
Q Consensus 323 L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rf 402 (430)
|++++++|++|||+|||||+++.+ +|.++|++||+||++||++|++||+|||||+|||+|||||||||.+||++||
T Consensus 383 L~~~~~rY~~ppI~ITENG~~~~~----~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~Rf 458 (497)
T PLN02998 383 LLYVKETYGNPPVYILENGQMTPH----SSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSF 458 (497)
T ss_pred HHHHHHHcCCCCEEEeCCCCccCC----CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCcc
Confidence 999999999988999999999743 4678999999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCCC-CcccccchhHHHHHHHhcC
Q 040158 403 GITYVDFKN-HLRRYLKYSAYWFKMFLLN 430 (430)
Q Consensus 403 GL~~VD~~~-~~~R~pK~S~~~y~~ii~~ 430 (430)
||++||+++ +++|+||+|++||+++|++
T Consensus 459 GLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 459 GLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred ceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 999999985 4799999999999999974
No 5
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.1e-116 Score=911.34 Aligned_cols=402 Identities=34% Similarity=0.607 Sum_probs=354.4
Q ss_pred CCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCch
Q 040158 6 STGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQ 85 (430)
Q Consensus 6 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 85 (430)
.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+
T Consensus 43 ~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~--~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 43 YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGY--GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 367999999999999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred hhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHHHHH
Q 040158 86 ALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAA 165 (430)
Q Consensus 86 ~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~ 165 (430)
||+++ |||+|+++++.|++||+.||++||+ |++|+|||||++++..||+.|.+|||.+.. .++.++|+
T Consensus 121 ~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~ 188 (467)
T TIGR01233 121 ALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSH 188 (467)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccch----------hHHHHHHH
Confidence 99986 9999999999999999999999998 999999999999999999999999996421 14679999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCC-CCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhhc
Q 040158 166 HTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKF-KTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGKR 244 (430)
Q Consensus 166 hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~ 244 (430)
||+++|||+||+++|+. .++++||++++..+++|.+ ++|+|++||++++++.++||+||++.|+||+.|++.++.+
T Consensus 189 hn~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~ 265 (467)
T TIGR01233 189 HNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHI 265 (467)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhh
Confidence 99999999999999996 3579999999999999998 8999999999999999999999999999999999987632
Q ss_pred ------CCCCChhhhhhh---cCCcceEEeecCccceeccCCCC-C----cC---CCCcccccccccccccCCCCCCCCC
Q 040158 245 ------LPKFTEGESTLV---KGSFDFLAVNYYTTNYADAAPPP-N----AF---QLSYTADRQVNLTTERDGVPVGSPT 307 (430)
Q Consensus 245 ------lP~ft~ee~~~i---kg~~DFlGiNyYt~~~v~~~~~~-~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (430)
+|.||++|+++| ++++||||||||++.+|+..... . .. ............... .+..+.+
T Consensus 266 ~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t 342 (467)
T TIGR01233 266 LAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVA---PDYVPRT 342 (467)
T ss_pred hhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccC---CCCCCcC
Confidence 377999999999 58999999999999999753110 0 00 000000000000000 1123567
Q ss_pred CCCCccccchHHHHHHHHHHHHcCC-CeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEee
Q 040158 308 ALGWLFVHPKGLQELLLYLKKKYNN-PTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIW 386 (430)
Q Consensus 308 ~~~w~~i~P~gl~~~L~~~~~~Y~~-p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~W 386 (430)
++|| +|+|+||+.+|++++++|++ |||||||||++..++.+ +|.++|++||+||++||++|++||+|||||+|||+|
T Consensus 343 ~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~-~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~W 420 (467)
T TIGR01233 343 DWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFV-DNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIW 420 (467)
T ss_pred CCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCC-CCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeec
Confidence 8999 59999999999999999997 67999999999865543 578999999999999999999999999999999999
Q ss_pred eccccccccCCCCCceeeEEEcCCCCcccccchhHHHHHHHhcC
Q 040158 387 TFWDDFEWDAGYTVRFGITYVDFKNHLRRYLKYSAYWFKMFLLN 430 (430)
Q Consensus 387 Sl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~ 430 (430)
||+|||||.+||++||||++||++ |++|+||+|++||+++|+.
T Consensus 421 Sl~Dn~Ew~~Gy~~RfGLv~VD~~-t~~R~~K~S~~wy~~ii~~ 463 (467)
T TIGR01233 421 SLMDVFSWSNGYEKRYGLFYVDFD-TQERYPKKSAHWYKKLAET 463 (467)
T ss_pred cchhhhchhccccCccceEEECCC-CCccccccHHHHHHHHHHh
Confidence 999999999999999999999998 8999999999999999973
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=2.2e-116 Score=913.06 Aligned_cols=405 Identities=36% Similarity=0.642 Sum_probs=355.2
Q ss_pred CCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCch
Q 040158 6 STGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQ 85 (430)
Q Consensus 6 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 85 (430)
.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+
T Consensus 44 ~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~--g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 44 FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGY--GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 378999999999999999999999999999999999999986 889999999999999999999999999999999999
Q ss_pred hhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHHHHH
Q 040158 86 ALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAA 165 (430)
Q Consensus 86 ~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~ 165 (430)
||+++ |||+|+++++.|++||+.||++||| |++|+|||||++++..||..|.+|||++.. .++.++|+
T Consensus 122 ~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~ 189 (469)
T PRK13511 122 ALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSH 189 (469)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHH
Confidence 99986 9999999999999999999999999 999999999999999999999999997531 14689999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCC-CCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhh-
Q 040158 166 HTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKF-KTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGK- 243 (430)
Q Consensus 166 hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~- 243 (430)
||+++|||+||++||+.. |+++||++++..+++|.+ ++++|++||++.+++.++||+||++.|+||..|++.++.
T Consensus 190 hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~ 266 (469)
T PRK13511 190 HNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHI 266 (469)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHh
Confidence 999999999999999963 679999999999999998 899999999999999999999999999999999987742
Q ss_pred -----cCCCCChhhhhhhc---CCcceEEeecCccceeccCCCCC-cCCCCcccccccc---cc--cccCCCCCCCCCCC
Q 040158 244 -----RLPKFTEGESTLVK---GSFDFLAVNYYTTNYADAAPPPN-AFQLSYTADRQVN---LT--TERDGVPVGSPTAL 309 (430)
Q Consensus 244 -----~lP~ft~ee~~~ik---g~~DFlGiNyYt~~~v~~~~~~~-~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~ 309 (430)
..|.||++|+++|+ +++||||||||++.+|+...... +.... ..+.... .. ......+..+.+++
T Consensus 267 ~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (469)
T PRK13511 267 LEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNG-TGEKGSSKYQLKGVGERVKPPDVPTTDW 345 (469)
T ss_pred hhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCC-CCccccccccccCccccccCCCCCcCCC
Confidence 12479999999997 46899999999999997532110 00000 0000000 00 00001123356789
Q ss_pred CCccccchHHHHHHHHHHHHcCC-CeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeec
Q 040158 310 GWLFVHPKGLQELLLYLKKKYNN-PTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTF 388 (430)
Q Consensus 310 ~w~~i~P~gl~~~L~~~~~~Y~~-p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl 388 (430)
|| +|+|+||+.+|++++++|++ |||||||||++..++++.++.++|++||+||++||++|++||+|||||+|||+|||
T Consensus 346 gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl 424 (469)
T PRK13511 346 DW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSL 424 (469)
T ss_pred CC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccc
Confidence 99 59999999999999999997 67999999999866555567899999999999999999999999999999999999
Q ss_pred cccccccCCCCCceeeEEEcCCCCcccccchhHHHHHHHhcC
Q 040158 389 WDDFEWDAGYTVRFGITYVDFKNHLRRYLKYSAYWFKMFLLN 430 (430)
Q Consensus 389 ~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~ 430 (430)
+|||||.+||++||||++|||+ |++|+||+|++||+++|+.
T Consensus 425 ~DnfEW~~Gy~~RfGl~~VD~~-~~~R~pK~S~~wy~~~i~~ 465 (469)
T PRK13511 425 MDVFSWSNGYEKRYGLFYVDFE-TQERYPKKSAYWYKKLAET 465 (469)
T ss_pred ccccchhcCccCccceEEECCC-cCccccccHHHHHHHHHHh
Confidence 9999999999999999999998 8999999999999999973
No 7
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-116 Score=886.63 Aligned_cols=402 Identities=37% Similarity=0.688 Sum_probs=361.8
Q ss_pred CCCCCCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 040158 2 MFDRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF 81 (430)
Q Consensus 2 ~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 81 (430)
+..+.++++||||||||+|||+|||+||+|+|||||+||||+|+++ .+++|++||+||+++||+|+++||+|+|||+||
T Consensus 45 ~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hf 123 (460)
T COG2723 45 LVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTLYHF 123 (460)
T ss_pred ccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 3456889999999999999999999999999999999999999985 138999999999999999999999999999999
Q ss_pred CCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChH
Q 040158 82 DPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEP 161 (430)
Q Consensus 82 ~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~ 161 (430)
|+|+||+++||||.|+++++.|++||+.||++|||+|++|+||||||+++..||+.|.+||+..+. +.+
T Consensus 124 d~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~-----------~~~ 192 (460)
T COG2723 124 DLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDP-----------KAA 192 (460)
T ss_pred CCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCH-----------HHH
Confidence 999999999999999999999999999999999999999999999999999999999999997653 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHH
Q 040158 162 YIAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIV 241 (430)
Q Consensus 162 ~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l 241 (430)
+||+||+++|||+|++++|+..+. .+||++++..+.||.+++|+|+.||+.++.+.|++|+||+++|+||..+.+.+
T Consensus 193 ~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~ 269 (460)
T COG2723 193 YQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKEL 269 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHH
Confidence 999999999999999999998652 39999999999999999999999999999999999999999999999999999
Q ss_pred hhc--CCCCChhhhhhhcC-CcceEEeecCcccee-ccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccch
Q 040158 242 GKR--LPKFTEGESTLVKG-SFDFLAVNYYTTNYA-DAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPK 317 (430)
Q Consensus 242 ~~~--lP~ft~ee~~~ikg-~~DFlGiNyYt~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~ 317 (430)
+.. +|.++++|+++||. ++||||+|||++..| +..+... ..+..+.... ....|..+.+++|| +|+|+
T Consensus 270 ~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~---~~~~~~~~~~----~~~~p~~~~sdwGW-eI~P~ 341 (460)
T COG2723 270 EENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYV---SGYGPGGFFT----SVPNPGLEVSDWGW-EIYPK 341 (460)
T ss_pred HhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcC---Cccccccccc----ccCCCCCcccCCCc-eeChH
Confidence 765 68999999999985 699999999995444 4332210 1111111011 11136667889999 59999
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCC
Q 040158 318 GLQELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAG 397 (430)
Q Consensus 318 gl~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~G 397 (430)
||+.+|+++++||+ +||||||||++..+..+.++ |+|++||+||++||.+|++||+|||+|+||++||++||+||++|
T Consensus 342 GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~-i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~g 419 (460)
T COG2723 342 GLYDILEKLYERYG-IPLFITENGLGVKDEVDFDG-INDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANG 419 (460)
T ss_pred HHHHHHHHHHHHhC-CCeEEecCCCCcccccccCC-cCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhc
Confidence 99999999999999 56999999999876665555 99999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEcCCCC-cccccchhHHHHHHHhc
Q 040158 398 YTVRFGITYVDFKNH-LRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 398 y~~rfGL~~VD~~~~-~~R~pK~S~~~y~~ii~ 429 (430)
|++||||++||++ | ++|+||+|++|||++|+
T Consensus 420 y~kRYGli~VD~~-~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 420 YKKRYGLVYVDYD-TDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred cccccccEEEccc-ccceeeecCceeeeHHHHh
Confidence 9999999999998 7 79999999999999996
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=9.2e-116 Score=908.05 Aligned_cols=397 Identities=30% Similarity=0.510 Sum_probs=352.5
Q ss_pred CCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchh
Q 040158 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQA 86 (430)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 86 (430)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .|.+|++||+||+++||+|+++||+|+|||+|||+|+|
T Consensus 64 ~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~ 142 (478)
T PRK09593 64 PAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMH 142 (478)
T ss_pred CCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHH
Confidence 58999999999999999999999999999999999999974 25699999999999999999999999999999999999
Q ss_pred hHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcccccccc-CCC-CCCCcCCCCCCCCCCCCCCChHHHH
Q 040158 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYN-GGS-FAPGRCSNYVGNCTAGDSATEPYIA 164 (430)
Q Consensus 87 l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~a 164 (430)
|+++||||+|+++++.|++||+.||++|||+|++|+|||||++++..||. .|. +|||..+ ..+.++|
T Consensus 143 L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a 211 (478)
T PRK09593 143 LIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQA 211 (478)
T ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHH
Confidence 99999999999999999999999999999999999999999999988886 454 4776422 2467999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhh-
Q 040158 165 AHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGK- 243 (430)
Q Consensus 165 ~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~- 243 (430)
+||+++|||+||++||+. .|+++||++++..+++|.+++++|++||++++ +.+.||+||++.|+||+.|++.+++
T Consensus 212 ~h~~llAHa~A~~~~~~~---~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~ 287 (478)
T PRK09593 212 AHHELVASAIATKIAHEV---DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFERE 287 (478)
T ss_pred HHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhc
Confidence 999999999999999986 35799999999999999999999999999887 5688999999999999999999975
Q ss_pred -cCCCCChhhhhhhc-CCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHH
Q 040158 244 -RLPKFTEGESTLVK-GSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQE 321 (430)
Q Consensus 244 -~lP~ft~ee~~~ik-g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~ 321 (430)
.+|.||++|+++|+ +++|||||||||+.+|+..+...+.. ..+ .... .. .|..+.+++|| +|+|+||+.
T Consensus 288 ~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~---~~~-~~~~---~~-~p~~~~~~~gw-~i~P~Gl~~ 358 (478)
T PRK09593 288 GITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKT---AGN-IFAS---LK-NPYLKASEWGW-QIDPLGLRI 358 (478)
T ss_pred CCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCC---CCC-cccc---cc-CCCcccCCCCC-EECHHHHHH
Confidence 36889999999996 99999999999999998533111100 000 0000 01 14556788999 599999999
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHH-cCCCeeEEEeeeccccccccCC-CC
Q 040158 322 LLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIK-EGVNVKAYYIWTFWDDFEWDAG-YT 399 (430)
Q Consensus 322 ~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~-dGv~v~GY~~WSl~Dn~EW~~G-y~ 399 (430)
+|++++++|++| |||||||++..++.+.+|.++|+.||+||++||++|++||+ |||||+|||+|||+|||||.+| |+
T Consensus 359 ~l~~~~~~Y~~P-i~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~ 437 (478)
T PRK09593 359 TLNTIWDRYQKP-MFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMK 437 (478)
T ss_pred HHHHHHHHcCCC-EEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCcc
Confidence 999999999976 99999999986666667889999999999999999999995 9999999999999999999999 99
Q ss_pred CceeeEEEcCCC----CcccccchhHHHHHHHhc
Q 040158 400 VRFGITYVDFKN----HLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 400 ~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~ 429 (430)
+||||++|||++ |++|+||+|++||+++|+
T Consensus 438 ~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 438 KRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred CeeceEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 999999999974 479999999999999996
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.9e-115 Score=902.98 Aligned_cols=397 Identities=31% Similarity=0.550 Sum_probs=348.8
Q ss_pred CCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchh
Q 040158 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQA 86 (430)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 86 (430)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .|.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 58 ~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~ 136 (476)
T PRK09589 58 PNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYH 136 (476)
T ss_pred CCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence 57999999999999999999999999999999999999975 25689999999999999999999999999999999999
Q ss_pred hHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccc-----ccc-CCC-CCCCcCCCCCCCCCCCCCCC
Q 040158 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMN-----GYN-GGS-FAPGRCSNYVGNCTAGDSAT 159 (430)
Q Consensus 87 l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~~~~~~ 159 (430)
|+++||||+|+++++.|++||+.||++|||+|++|+|||||++++.. ||. .|. +|||... ..
T Consensus 137 L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~ 205 (476)
T PRK09589 137 LVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQ 205 (476)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hH
Confidence 99999999999999999999999999999999999999999998776 444 344 3665321 14
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHH
Q 040158 160 EPYIAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRR 239 (430)
Q Consensus 160 ~~~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~ 239 (430)
..++|+||+++|||+|++++|+.. ++++||++++..+++|.+++|+|++||++++.+ +.||+||++.|+||..|++
T Consensus 206 ~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~ 281 (476)
T PRK09589 206 IMYQAAHYELVASALAVKTGHEIN---PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILN 281 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHH
Confidence 579999999999999999999974 468999999999999999999999999998854 6799999999999999999
Q ss_pred HHhhc--CCCCChhhhhhh-cCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccc
Q 040158 240 IVGKR--LPKFTEGESTLV-KGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHP 316 (430)
Q Consensus 240 ~l~~~--lP~ft~ee~~~i-kg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P 316 (430)
.++++ .|.||++|+++| ++++||||||||++.+|+.... .+. ..+..+. .. .. .|..+.+++|| +|+|
T Consensus 282 ~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~-~~~-~~~~~~~--~~---~~-~~~~~~~~~gw-~i~P 352 (476)
T PRK09589 282 YFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHED-NPQ-LDYVETR--DL---VS-NPYVKASEWGW-QIDP 352 (476)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCC-CCC-CCccccc--cc---cc-CCCcccCCCCC-ccCc
Confidence 99864 478999999999 5899999999999999975321 110 0010000 00 01 14456788999 5999
Q ss_pred hHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHH-HcCCCeeEEEeeecccccccc
Q 040158 317 KGLQELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAI-KEGVNVKAYYIWTFWDDFEWD 395 (430)
Q Consensus 317 ~gl~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai-~dGv~v~GY~~WSl~Dn~EW~ 395 (430)
+||+.+|++++++|++| |||||||++..++++.+|.++|++||+||++||++|++|| +|||||+|||+|||||||||.
T Consensus 353 ~Gl~~~L~~~~~~Y~~P-i~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~ 431 (476)
T PRK09589 353 AGLRYSLNWFWDHYQLP-LFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAG 431 (476)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccccccc
Confidence 99999999999999976 9999999998666666788999999999999999999999 899999999999999999999
Q ss_pred CC-CCCceeeEEEcCCC----CcccccchhHHHHHHHhc
Q 040158 396 AG-YTVRFGITYVDFKN----HLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 396 ~G-y~~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~ 429 (430)
+| |++||||++|||++ |++|+||+|++||+++|+
T Consensus 432 ~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~ 470 (476)
T PRK09589 432 TGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIA 470 (476)
T ss_pred CCccccceeeEEEcCCCCCCcccccccccHHHHHHHHHH
Confidence 99 99999999999974 469999999999999996
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=3.3e-116 Score=912.01 Aligned_cols=405 Identities=49% Similarity=0.897 Sum_probs=351.4
Q ss_pred CCCCCCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 040158 2 MFDRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF 81 (430)
Q Consensus 2 ~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 81 (430)
+.+++++++||||||+|+|||+|||+||+++|||||+|+||+|+|. .|.+|+++++||+++|++|+++||+|+|||+||
T Consensus 44 ~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~ 122 (455)
T PF00232_consen 44 VEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF 122 (455)
T ss_dssp STTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS
T ss_pred eeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeeeeec
Confidence 5678889999999999999999999999999999999999999982 299999999999999999999999999999999
Q ss_pred CCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChH
Q 040158 82 DPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEP 161 (430)
Q Consensus 82 ~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~ 161 (430)
|+|+||++ +|||+|+++++.|++||++|+++|||+|++|+|||||++++..||+.|.+|||..+. ++.
T Consensus 123 ~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~-----------~~~ 190 (455)
T PF00232_consen 123 DLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSL-----------KAF 190 (455)
T ss_dssp --BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTH-----------HHH
T ss_pred ccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeecccccccccccccccc-----------chh
Confidence 99999998 699999999999999999999999999999999999999999999999999996543 688
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHH-HHHHHHhhhhcccccccccccCCcHHHHHH
Q 040158 162 YIAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASR-QAASRARDFFFGWFADPVTFGNYPESMRRI 240 (430)
Q Consensus 162 ~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~-~aa~~~~~~~~~~fldpi~~G~YP~~~~~~ 240 (430)
++|+||+++||++||+++|+.+ ++++||++++..+++|.+++++|. +||++.+++.|+||+||++.|+||..|++.
T Consensus 191 ~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~ 267 (455)
T PF00232_consen 191 YQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEY 267 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhc
Confidence 9999999999999999999986 579999999999999999988776 899999999999999999999999999999
Q ss_pred Hhhc--CCCCChhhhhhhcCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchH
Q 040158 241 VGKR--LPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKG 318 (430)
Q Consensus 241 l~~~--lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~g 318 (430)
++++ +|.||++|++.|++++||||||||++.+|+..+...... .... ....... ..+.++.+++||+ ++|+|
T Consensus 268 ~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~-~~~~--~~~~~~~--~~~~~~~t~~gw~-i~P~G 341 (455)
T PF00232_consen 268 LGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPP-SYDS--DAPFGQP--YNPGGPTTDWGWE-IYPEG 341 (455)
T ss_dssp HGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSST-THEE--EESEEEE--CETSSEBCTTSTB-BETHH
T ss_pred cccccccccccchhhhcccccchhhhhccccceeeccCccccccc-cccC--Ccccccc--ccccccccccCcc-cccch
Confidence 9988 999999999999999999999999999999765321110 1100 0000000 0245577999995 99999
Q ss_pred HHHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCC
Q 040158 319 LQELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGY 398 (430)
Q Consensus 319 l~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy 398 (430)
|+++|++++++|++|||+|||||+++.++... +.++|+.||+||++||++|++||+|||||+||++|||||||||.+||
T Consensus 342 l~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~-~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy 420 (455)
T PF00232_consen 342 LRDVLRYLKDRYGNPPIYITENGIGDPDEVDD-GKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGY 420 (455)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEE---EETTCTT-SHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGG
T ss_pred HhhhhhhhccccCCCcEEEecccccccccccc-cCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCc
Confidence 99999999999999999999999999654433 88999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEcCCCCcccccchhHHHHHHHhc
Q 040158 399 TVRFGITYVDFKNHLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 399 ~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 429 (430)
++||||++|||.+|++|+||+|++||+++|+
T Consensus 421 ~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 421 KKRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp GSE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred cCccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 9999999999534999999999999999997
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.1e-113 Score=891.53 Aligned_cols=396 Identities=30% Similarity=0.529 Sum_probs=348.4
Q ss_pred CCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchh
Q 040158 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQA 86 (430)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 86 (430)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 60 ~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~ 138 (477)
T PRK15014 60 PNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLH 138 (477)
T ss_pred CCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 67899999999999999999999999999999999999974 25689999999999999999999999999999999999
Q ss_pred hHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcc-----ccccccC-CCC-CCCcCCCCCCCCCCCCCCC
Q 040158 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM-----VMNGYNG-GSF-APGRCSNYVGNCTAGDSAT 159 (430)
Q Consensus 87 l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~~~~~~ 159 (430)
|+++||||+|++++++|++||++||++|||+|++|+|||||+++ +..||.. |.+ ||+... ..
T Consensus 139 L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~-----------~~ 207 (477)
T PRK15014 139 LVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP-----------EE 207 (477)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch-----------hH
Confidence 99999999999999999999999999999999999999999987 6778884 775 454211 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHH
Q 040158 160 EPYIAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRR 239 (430)
Q Consensus 160 ~~~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~ 239 (430)
+.++|+||+++|||+||+++|+.. ++++||++++..+++|.+++|+|++||++++. ...||+||++.|+||+.|++
T Consensus 208 ~~~~~~h~~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~ 283 (477)
T PRK15014 208 TMYQVLHHQFVASALAVKAARRIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLN 283 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHH
Confidence 579999999999999999999974 47999999999999999999999999998773 22359999999999999999
Q ss_pred HHhhcC--CCCChhhhhhh-cCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccc
Q 040158 240 IVGKRL--PKFTEGESTLV-KGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHP 316 (430)
Q Consensus 240 ~l~~~l--P~ft~ee~~~i-kg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P 316 (430)
.++++. |.|+++|+++| ++++|||||||||+.+|+...........+ .. ... .|..+.+++|| +|+|
T Consensus 284 ~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~-----~~---~~~-~~~~~~~~~gw-~i~P 353 (477)
T PRK15014 284 EWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGF-----EG---SVP-NPYVKASDWGW-QIDP 353 (477)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCcccc-----cc---ccC-CCCcccCCCCC-ccCc
Confidence 998764 78999999999 589999999999999997532100000000 00 001 14445778999 5999
Q ss_pred hHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHH-cCCCeeEEEeeecccccccc
Q 040158 317 KGLQELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIK-EGVNVKAYYIWTFWDDFEWD 395 (430)
Q Consensus 317 ~gl~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~-dGv~v~GY~~WSl~Dn~EW~ 395 (430)
+||+.+|++++++|++| |||||||++..++++.+|.++|++||+||++||++|++||+ |||||+|||+|||||||||.
T Consensus 354 ~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~ 432 (477)
T PRK15014 354 VGLRYALCELYERYQKP-LFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFT 432 (477)
T ss_pred HHHHHHHHHHHHhcCCC-EEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhccc
Confidence 99999999999999976 99999999987666667889999999999999999999995 99999999999999999999
Q ss_pred CC-CCCceeeEEEcCCC----CcccccchhHHHHHHHhc
Q 040158 396 AG-YTVRFGITYVDFKN----HLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 396 ~G-y~~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~ 429 (430)
+| |++|||||+|||++ +++|+||+|++||+++|+
T Consensus 433 ~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (477)
T PRK15014 433 TGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIA 471 (477)
T ss_pred CCCccCccceEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 99 99999999999974 479999999999999996
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.3e-113 Score=889.49 Aligned_cols=397 Identities=30% Similarity=0.524 Sum_probs=354.6
Q ss_pred CCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchh
Q 040158 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQA 86 (430)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 86 (430)
++++||||||||+|||+||++||+++|||||+||||+|++. .+.+|+++|+||+++|++|+++||+|+|||+|||+|+|
T Consensus 62 ~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~ 140 (474)
T PRK09852 62 PSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMH 140 (474)
T ss_pred CCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 67999999999999999999999999999999999999975 25689999999999999999999999999999999999
Q ss_pred hHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcccccccc-CCC-CCCCcCCCCCCCCCCCCCCChHHHH
Q 040158 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYN-GGS-FAPGRCSNYVGNCTAGDSATEPYIA 164 (430)
Q Consensus 87 l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~a 164 (430)
|+++||||+|+++++.|++||+.|+++|||+|++|+|||||++++..||. .|. +|||... ....++|
T Consensus 141 l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~ 209 (474)
T PRK09852 141 LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQA 209 (474)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHH
Confidence 99999999999999999999999999999999999999999999999996 675 5887532 2457999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhhc
Q 040158 165 AHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGKR 244 (430)
Q Consensus 165 ~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~ 244 (430)
+||+++|||+||+++|+.. ++++||++++..+++|.+++++|++||++++ +.+.||+||++.|+||+.|++.++++
T Consensus 210 ~hn~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~ 285 (474)
T PRK09852 210 AHHELVASALATKIAHEVN---PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREK 285 (474)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhc
Confidence 9999999999999999874 4689999999999999999999999998876 56889999999999999999999864
Q ss_pred --CCCCChhhhhhhcCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHHH
Q 040158 245 --LPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQEL 322 (430)
Q Consensus 245 --lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~~ 322 (430)
+|.||++|+++|++++||||||||++.+|+........ . ....... .. .|..+.+++|| +|+|+||+.+
T Consensus 286 ~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~--~--~~~~~~~---~~-~p~~~~~~~gw-~i~P~Gl~~~ 356 (474)
T PRK09852 286 GVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNS--S--AANVVKS---LR-NPYLQVSDWGW-GIDPLGLRIT 356 (474)
T ss_pred CCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCC--C--cCCceec---cc-CCCcccCCCCC-eeChHHHHHH
Confidence 78999999999999999999999999999753210000 0 0000000 01 25556788999 5999999999
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCC-CCCc
Q 040158 323 LLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAG-YTVR 401 (430)
Q Consensus 323 L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~G-y~~r 401 (430)
|++++++|++| |||||||++..++.+.++.++|++||+||++||++|++||+|||||+|||+|||||||||.+| |++|
T Consensus 357 l~~~~~~Y~~P-i~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~R 435 (474)
T PRK09852 357 MNMMYDRYQKP-LFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKR 435 (474)
T ss_pred HHHHHHhcCCC-EEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccce
Confidence 99999999986 999999999866666678899999999999999999999999999999999999999999999 9999
Q ss_pred eeeEEEcCCC----CcccccchhHHHHHHHhc
Q 040158 402 FGITYVDFKN----HLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 402 fGL~~VD~~~----~~~R~pK~S~~~y~~ii~ 429 (430)
||||+|||++ |++|+||+|++||+++|+
T Consensus 436 fGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 436 YGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred eeeEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 9999999984 579999999999999996
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=3.8e-111 Score=865.13 Aligned_cols=387 Identities=41% Similarity=0.748 Sum_probs=354.7
Q ss_pred CCCCCCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 040158 3 FDRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFD 82 (430)
Q Consensus 3 ~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 82 (430)
.++.++++||||||+|+|||++||+||+++|||||+|+||+|+|. |.+|+++++||+++|++|+++||+|+|||+|||
T Consensus 41 ~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~--~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 41 KDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT--GPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred cCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCC--CCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 355688999999999999999999999999999999999999975 889999999999999999999999999999999
Q ss_pred CchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHH
Q 040158 83 PPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPY 162 (430)
Q Consensus 83 ~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~ 162 (430)
+|+||+++ |||.|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.+||+.++. ...+
T Consensus 119 ~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~ 186 (427)
T TIGR03356 119 LPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDL-----------RAAL 186 (427)
T ss_pred ccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccH-----------HHHH
Confidence 99999988 99999999999999999999999999999999999999999999999999996431 4579
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHh
Q 040158 163 IAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVG 242 (430)
Q Consensus 163 ~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~ 242 (430)
+|+||+++|||+||+++|+.. ++++||++++..+++|.+++++|++||++++++.++||+||++.|+||..|++.++
T Consensus 187 ~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~ 263 (427)
T TIGR03356 187 QAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG 263 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc
Confidence 999999999999999999975 47999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCChhhhhhhcCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHHH
Q 040158 243 KRLPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQEL 322 (430)
Q Consensus 243 ~~lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~~ 322 (430)
. +|.||++|++++++++||||||||++.+|+......+ .. .. ..+..+.+++|| +|+|+||+.+
T Consensus 264 ~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~---~~----~~-------~~~~~~~~~~gw-~i~P~Gl~~~ 327 (427)
T TIGR03356 264 D-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGA---GF----VE-------VPEGVPKTAMGW-EVYPEGLYDL 327 (427)
T ss_pred c-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCC---Cc----cc-------cCCCCCcCCCCC-eechHHHHHH
Confidence 4 7999999999999999999999999999975321100 00 00 013335678999 6999999999
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCCCCce
Q 040158 323 LLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGYTVRF 402 (430)
Q Consensus 323 L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rf 402 (430)
|+++++||++|||+|||||++..++.+ +|+++|++||+||++||++|++||+|||||+||++|||+|||||.+||++||
T Consensus 328 L~~~~~rY~~ppi~ITENG~~~~d~~~-~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rf 406 (427)
T TIGR03356 328 LLRLKEDYPGPPIYITENGAAFDDEVT-DGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRF 406 (427)
T ss_pred HHHHHHhcCCCCEEEeCCCCCcCCCCc-CCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhccccccc
Confidence 999999999888999999999866555 7789999999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCCCCcccccchhHHHH
Q 040158 403 GITYVDFKNHLRRYLKYSAYWF 424 (430)
Q Consensus 403 GL~~VD~~~~~~R~pK~S~~~y 424 (430)
||++||++ |++|+||+|++||
T Consensus 407 Gl~~VD~~-~~~R~~K~S~~wy 427 (427)
T TIGR03356 407 GLVHVDYE-TQKRTPKDSAKWY 427 (427)
T ss_pred ceEEECCC-CCcccccceeeeC
Confidence 99999998 8999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.60 E-value=3.6e-13 Score=130.10 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=159.0
Q ss_pred ccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeE--EEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 040158 37 ISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKP--FVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTY 114 (430)
Q Consensus 37 i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 114 (430)
+.|++++|++ |.+|.+. .|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||
T Consensus 1 ~kW~~~ep~~---G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry 70 (254)
T smart00633 1 MKWDSTEPSR---GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRY 70 (254)
T ss_pred CCcccccCCC---CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHh
Confidence 3599999998 9999755 778999999999995 4456778899998642 2 5678899999999999999
Q ss_pred CCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 040158 115 GDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAHTMLLSHEALVNLYKHKYQPYQKGKIGIT 194 (430)
Q Consensus 115 gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~ 194 (430)
+++|..|.++|||...... |.+. ...+.++-.-. -..|+++.|+..| +.++-+.
T Consensus 71 ~g~i~~wdV~NE~~~~~~~---------~~~~------------~~w~~~~G~~~--i~~af~~ar~~~P---~a~l~~N 124 (254)
T smart00633 71 KGKIYAWDVVNEALHDNGS---------GLRR------------SVWYQILGEDY--IEKAFRYAREADP---DAKLFYN 124 (254)
T ss_pred CCcceEEEEeeecccCCCc---------cccc------------chHHHhcChHH--HHHHHHHHHHhCC---CCEEEEe
Confidence 9999999999999853111 1110 00111110001 2246667777654 4554332
Q ss_pred eecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhhcCCCCChhhhhhhcCCcceEEeecCccceec
Q 040158 195 ILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGKRLPKFTEGESTLVKGSFDFLAVNYYTTNYAD 274 (430)
Q Consensus 195 ~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~ 274 (430)
......+ . .. ...... +.+.+. .-..++|=||++....
T Consensus 125 -dy~~~~~---~-~k---~~~~~~------------------~v~~l~------------~~g~~iDgiGlQ~H~~---- 162 (254)
T smart00633 125 -DYNTEEP---N-AK---RQAIYE------------------LVKKLK------------AKGVPIDGIGLQSHLS---- 162 (254)
T ss_pred -ccCCcCc---c-HH---HHHHHH------------------HHHHHH------------HCCCccceeeeeeeec----
Confidence 1111111 0 00 001111 111111 1123579999953211
Q ss_pred cCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCccccc
Q 040158 275 AAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQELLLYLKKKYNNPTIYITENGLADDASLPLKVAL 354 (430)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~ 354 (430)
.. ...|..|...|..+.+. +.| |+|||.++...+
T Consensus 163 ~~------------------------------------~~~~~~~~~~l~~~~~~-g~p-i~iTE~dv~~~~-------- 196 (254)
T smart00633 163 LG------------------------------------SPNIAEIRAALDRFASL-GLE-IQITELDISGYP-------- 196 (254)
T ss_pred CC------------------------------------CCCHHHHHHHHHHHHHc-CCc-eEEEEeecCCCC--------
Confidence 00 01245789999999765 765 999999998641
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCCCCceeeEEEcCCCCcccccchhHHH
Q 040158 355 KDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGYTVRFGITYVDFKNHLRRYLKYSAYW 423 (430)
Q Consensus 355 ~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~ 423 (430)
....+.+++++++..+.. .. .|.|.+.|.+.|..+|..+ .+.||+.=| -+||+++++
T Consensus 197 ~~~~qA~~~~~~l~~~~~---~p-~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~------~~~kpa~~~ 253 (254)
T smart00633 197 NPQAQAADYEEVFKACLA---HP-AVTGVTVWGVTDKYSWLDG--GAPLLFDAN------YQPKPAYWA 253 (254)
T ss_pred cHHHHHHHHHHHHHHHHc---CC-CeeEEEEeCCccCCcccCC--CCceeECCC------CCCChhhhc
Confidence 114566677777666544 22 7899999999999999765 577898433 348888764
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.29 E-value=7.9e-12 Score=127.38 Aligned_cols=109 Identities=26% Similarity=0.442 Sum_probs=87.5
Q ss_pred hchHHHHHHHHHcCCCEEEe-cccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhh---
Q 040158 16 HHYKEDIKLMKKVGLDSFRF-SISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEY--- 91 (430)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--- 91 (430)
..+++|+++||++|+|++|+ .++|+++||++ |++|. +.+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 46899999999999999996 57999999998 99996 5588999999999999999999999999998653
Q ss_pred ------------CC-----CCChhhHHHHHHHHHHHHHHhCCC--ceeEEeccCCCcc
Q 040158 92 ------------GG-----FLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPNGM 130 (430)
Q Consensus 92 ------------gg-----w~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~~ 130 (430)
|+ ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 224567788888899999999974 8999999999853
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.20 E-value=6.2e-11 Score=114.91 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=90.4
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccc-cCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRIL-PKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~-p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 95 (430)
..++|++.|+++|+|++|+.|.|..++ |.+. +.++.+.++.++++|+.+.++||.++++||+. |.|.... ++..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~--~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPG--YNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTT--TSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCC--ccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 678999999999999999999998888 5653 56999999999999999999999999999874 6663322 2333
Q ss_pred C-hhhHHHHHHHHHHHHHHhCC--CceeEEeccCCCcc
Q 040158 96 S-PKIVKDFVDYGDFCFKTYGD--RVKLWASMNEPNGM 130 (430)
Q Consensus 96 ~-~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~ 130 (430)
. ....+.|.++++.++++|++ .|..|.++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 3 45678899999999999954 58899999999864
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.13 E-value=9.6e-09 Score=102.27 Aligned_cols=251 Identities=16% Similarity=0.258 Sum_probs=139.1
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC---CCCchhhHHhhCCCC
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLH---FDPPQALEEEYGGFL 95 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~ggw~ 95 (430)
++=+++||+.|+|++|+-+ | +-|.. .|.-| ++.--++..+.+++||+.++++|- |.=|..-... .+|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD--GGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT--TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCC
Confidence 3447999999999999988 5 34443 15555 567889999999999999999873 2233221111 5788
Q ss_pred C---hhhHHHHHHHHHHHHHHhCC---CceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHHH
Q 040158 96 S---PKIVKDFVDYGDFCFKTYGD---RVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAHTML 169 (430)
Q Consensus 96 ~---~~~~~~f~~ya~~~~~~~gd---~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~l 169 (430)
+ .+..+.-.+|.+.+.+.+.+ .++++++=||.+.-.. +|-|... -+.-+-.++
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~~--------------~~~~~a~ll 156 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKPS--------------NWDNLAKLL 156 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCTT---------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCcc--------------CHHHHHHHH
Confidence 7 56778888999888887754 5899999999874221 4444321 133333455
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhhcCCCCC
Q 040158 170 LSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGKRLPKFT 249 (430)
Q Consensus 170 ~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lP~ft 249 (430)
.|= ++++|+.. +..+|.+.+... .|... ..||.+-+.
T Consensus 157 ~ag---~~AVr~~~---p~~kV~lH~~~~---------~~~~~--------~~~~f~~l~-------------------- 193 (332)
T PF07745_consen 157 NAG---IKAVREVD---PNIKVMLHLANG---------GDNDL--------YRWFFDNLK-------------------- 193 (332)
T ss_dssp HHH---HHHHHTHS---STSEEEEEES-T---------TSHHH--------HHHHHHHHH--------------------
T ss_pred HHH---HHHHHhcC---CCCcEEEEECCC---------CchHH--------HHHHHHHHH--------------------
Confidence 544 44555554 357776665431 11111 123333221
Q ss_pred hhhhhhhcCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHHHHHHHHHH
Q 040158 250 EGESTLVKGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQELLLYLKKK 329 (430)
Q Consensus 250 ~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~~L~~~~~~ 329 (430)
.-....|.||++||.- | .-....|...|+.+.+|
T Consensus 194 -----~~g~d~DviGlSyYP~---------------w--------------------------~~~l~~l~~~l~~l~~r 227 (332)
T PF07745_consen 194 -----AAGVDFDVIGLSYYPF---------------W--------------------------HGTLEDLKNNLNDLASR 227 (332)
T ss_dssp -----HTTGG-SEEEEEE-ST---------------T--------------------------ST-HHHHHHHHHHHHHH
T ss_pred -----hcCCCcceEEEecCCC---------------C--------------------------cchHHHHHHHHHHHHHH
Confidence 1123569999999951 1 01335899999999999
Q ss_pred cCCCeEEEeecCCCCC-CCCCcccccCch--------hHHHHHHHHHHHHHHHHHc--CCCeeEEEeeecc
Q 040158 330 YNNPTIYITENGLADD-ASLPLKVALKDS--------MRIRYLHSHLEYLLKAIKE--GVNVKAYYIWTFW 389 (430)
Q Consensus 330 Y~~p~I~ITENG~~~~-~~~~~~~~~~D~--------~Ri~yl~~hl~~~~~Ai~d--Gv~v~GY~~WSl~ 389 (430)
|+. ||+|+|.|++.. ++.+..+.+... .=.+=-++.|..+.+++.+ |-...|.|+|---
T Consensus 228 y~K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~ 297 (332)
T PF07745_consen 228 YGK-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPA 297 (332)
T ss_dssp HT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT
T ss_pred hCC-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccc
Confidence 987 599999998873 111100000000 0011223445566666653 6799999999543
No 18
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.09 E-value=3.3e-08 Score=106.98 Aligned_cols=262 Identities=19% Similarity=0.187 Sum_probs=150.6
Q ss_pred hchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHH------
Q 040158 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEE------ 89 (430)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~------ 89 (430)
..+..|+++||++|+|++|+|- .|.. ..+++.|-+.||-++.-+.-+....|+..
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~--------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS--------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC--------------HHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 4578899999999999999962 2322 16778888999988876533322222210
Q ss_pred -hhCCCC----ChhhHHHHHHHHHHHHHHhCCC--ceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHH
Q 040158 90 -EYGGFL----SPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPY 162 (430)
Q Consensus 90 -~~ggw~----~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~ 162 (430)
....|. +++..+.+.+-++.++++..++ |-.|.+-||+... .++ .
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~~------------------~ 425 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQG------------------A 425 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------chh------------------H
Confidence 001222 3567788888899999999875 8899999997310 000 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHh
Q 040158 163 IAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVG 242 (430)
Q Consensus 163 ~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~ 242 (430)
.. .+...++++|+..+. -.|..+.+... .+.
T Consensus 426 ~~------~~~~l~~~~k~~Dpt---R~vt~~~~~~~--------------------------~~~-------------- 456 (604)
T PRK10150 426 RE------YFAPLAELTRKLDPT---RPVTCVNVMFA--------------------------TPD-------------- 456 (604)
T ss_pred HH------HHHHHHHHHHhhCCC---CceEEEecccC--------------------------Ccc--------------
Confidence 11 123445666776542 22333221100 000
Q ss_pred hcCCCCChhhhhhhcCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHHH
Q 040158 243 KRLPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQEL 322 (430)
Q Consensus 243 ~~lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~~ 322 (430)
...+...+|++|+|.|...+..... . . .+ -..|...
T Consensus 457 ----------~~~~~~~~Dv~~~N~Y~~wy~~~~~--------------~--------------~-----~~-~~~~~~~ 492 (604)
T PRK10150 457 ----------TDTVSDLVDVLCLNRYYGWYVDSGD--------------L--------------E-----TA-EKVLEKE 492 (604)
T ss_pred ----------cccccCcccEEEEcccceecCCCCC--------------H--------------H-----HH-HHHHHHH
Confidence 0012234699999988653321100 0 0 00 0124445
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCC--CcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCC--
Q 040158 323 LLYLKKKYNNPTIYITENGLADDASL--PLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGY-- 398 (430)
Q Consensus 323 L~~~~~~Y~~p~I~ITENG~~~~~~~--~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy-- 398 (430)
|....+.|+. ||+|||.|.+..... ..++.-..++...|++.|+.. +++-=-|.|-|.|.+.|- .+..|.
T Consensus 493 ~~~~~~~~~k-P~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~----~~~~p~~~G~~iW~~~D~-~~~~g~~~ 566 (604)
T PRK10150 493 LLAWQEKLHK-PIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRV----FDRVPAVVGEQVWNFADF-ATSQGILR 566 (604)
T ss_pred HHHHHHhcCC-CEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHH----HhcCCceEEEEEEeeecc-CCCCCCcc
Confidence 5556666765 499999996542110 001111345566666666654 444457999999999992 222221
Q ss_pred --CCceeeEEEcCCCCcccccchhHHHHHHHhc
Q 040158 399 --TVRFGITYVDFKNHLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 399 --~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 429 (430)
....||+ +..|+||++++.||++-+
T Consensus 567 ~~g~~~Gl~------~~dr~~k~~~~~~k~~~~ 593 (604)
T PRK10150 567 VGGNKKGIF------TRDRQPKSAAFLLKKRWT 593 (604)
T ss_pred cCCCcceeE------cCCCCChHHHHHHHHHhh
Confidence 1366777 345889999999998643
No 19
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=4.2e-07 Score=88.42 Aligned_cols=272 Identities=17% Similarity=0.136 Sum_probs=157.6
Q ss_pred ccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEE-E-cCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 040158 37 ISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFV-T-LLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTY 114 (430)
Q Consensus 37 i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-t-L~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 114 (430)
+-|.-|+|+. |.+|+++ -|.+++-++++|+..-- | +.|--.|.|+.. --+..+...+...++-..|++||
T Consensus 67 mKwe~i~p~~---G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4688888876 8999877 67899999999997543 2 235567889853 23677889999999999999999
Q ss_pred CCCceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEE
Q 040158 115 GDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAHTMLLSHEALVNLYKHKYQPYQKGKIGIT 194 (430)
Q Consensus 115 gd~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~ 194 (430)
.+.|..|-+.|||-- ...++-...+.-+.. +.+ .|. .|++.-|+.. ++++.-+.
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~------------gpd------~I~----~aF~~Aread---P~AkL~~N 192 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT------------GPD------YIK----LAFHIAREAD---PDAKLVIN 192 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC------------ccH------HHH----HHHHHHHhhC---CCceEEee
Confidence 999999999999964 222222111111110 122 222 2334445543 45664433
Q ss_pred eecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhhcCCCCChhhhhhhcC-CcceEEeecCcccee
Q 040158 195 ILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGKRLPKFTEGESTLVKG-SFDFLAVNYYTTNYA 273 (430)
Q Consensus 195 ~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lP~ft~ee~~~ikg-~~DFlGiNyYt~~~v 273 (430)
- .. ...+|. .++ .| +. |++.|.+ || ++|=+|++---
T Consensus 193 D-Y~----ie~~~~----kr~--~~-----~n----------lI~~Lke-------------kG~pIDgiG~QsH~---- 229 (345)
T COG3693 193 D-YS----IEGNPA----KRN--YV-----LN----------LIEELKE-------------KGAPIDGIGIQSHF---- 229 (345)
T ss_pred c-cc----ccCChH----HHH--HH-----HH----------HHHHHHH-------------CCCCccceeeeeee----
Confidence 2 11 122222 111 11 00 2222211 35 48888887541
Q ss_pred ccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccc
Q 040158 274 DAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQELLLYLKKKYNNPTIYITENGLADDASLPLKVA 353 (430)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~ 353 (430)
+ .+| ..++-.+..|..+.+. +. +|+|||--+.+.. +..++
T Consensus 230 ~----------------------------------~~~--~~~~~~~~a~~~~~k~-Gl-~i~VTELD~~~~~--P~~~~ 269 (345)
T COG3693 230 S----------------------------------GDG--PSIEKMRAALLKFSKL-GL-PIYVTELDMSDYT--PDSGA 269 (345)
T ss_pred c----------------------------------CCC--CCHHHHHHHHHHHhhc-CC-CceEEEeeeeccC--CCCcc
Confidence 1 011 1122344455555555 65 4999999998742 11122
Q ss_pred cCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCCCCceee-EEEcCCCCcccccchhHHHHHHHhc
Q 040158 354 LKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGYTVRFGI-TYVDFKNHLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 354 ~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGL-~~VD~~~~~~R~pK~S~~~y~~ii~ 429 (430)
..+..+.++. ..+.-.......-.|.+.+.|.+.|+++|..|..+|++= =-.=| +..=.||+..++..++.+
T Consensus 270 p~~~~~~~~~--~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~--D~n~~pKPa~~aI~e~la 342 (345)
T COG3693 270 PRLYLQKAAS--RAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLF--DDNYQPKPAYKAIAEVLA 342 (345)
T ss_pred HHHHHHHHHH--HHHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCccc--CCCCCcchHHHHHHHHhc
Confidence 2222222222 112222223466779999999999999999998888851 00011 123559999999887654
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.89 E-value=8.3e-08 Score=101.22 Aligned_cols=290 Identities=23% Similarity=0.340 Sum_probs=135.3
Q ss_pred hHHHHHHHH-HcCCCEEEec--c--cCCcccc-CCCCCCC--CChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHH
Q 040158 18 YKEDIKLMK-KVGLDSFRFS--I--SWTRILP-KGKISGG--VNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEE 89 (430)
Q Consensus 18 ~~eDi~l~~-~lG~~~~R~s--i--~W~ri~p-~~~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 89 (430)
+++.+..++ ++||+.+||- + +..-..+ .+. |. +|+ ...|+++|.|+++||+|+|.|.. +|.++..
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~--~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~ 113 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDED--GIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALAS 113 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETT--EEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccC--CCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcC
Confidence 555666665 9999999996 2 2222222 221 32 675 66889999999999999999975 6766532
Q ss_pred h------hCCCCC-hhhHHHHHHHHHHHHH----HhCC-Cce--eEEeccCCCccccccccCCCCCCCcCCCCCCCCCCC
Q 040158 90 E------YGGFLS-PKIVKDFVDYGDFCFK----TYGD-RVK--LWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAG 155 (430)
Q Consensus 90 ~------~ggw~~-~~~~~~f~~ya~~~~~----~~gd-~v~--~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~ 155 (430)
. +.|+.+ +...+.+.++++.+++ |||. .|. +|.+||||++..+ +..|.
T Consensus 114 ~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~----------- 175 (486)
T PF01229_consen 114 GYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT----------- 175 (486)
T ss_dssp S--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG------------
T ss_pred CCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC-----------
Confidence 1 122322 3556777777666555 4552 466 5589999996321 11111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcH
Q 040158 156 DSATEPYIAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPE 235 (430)
Q Consensus 156 ~~~~~~~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~ 235 (430)
.+.|. .+ ...+++++|+..| ..+||--- ..... .. .+ ..|
T Consensus 176 ---~~ey~---~l---y~~~~~~iK~~~p---~~~vGGp~-----~~~~~-~~---~~---~~~---------------- 215 (486)
T PF01229_consen 176 ---PEEYF---EL---YDATARAIKAVDP---ELKVGGPA-----FAWAY-DE---WC---EDF---------------- 215 (486)
T ss_dssp ---HHHHH---HH---HHHHHHHHHHH-T---TSEEEEEE-----EETT--TH---HH---HHH----------------
T ss_pred ---HHHHH---HH---HHHHHHHHHHhCC---CCcccCcc-----ccccH-HH---HH---HHH----------------
Confidence 11121 22 3446667777754 58888440 00000 00 00 111
Q ss_pred HHHHHHhhcCCCCChhhhhhhcCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCcccc
Q 040158 236 SMRRIVGKRLPKFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVH 315 (430)
Q Consensus 236 ~~~~~l~~~lP~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~ 315 (430)
.+.+..+ .-++|||.+-.|.......... . .... .... ..+.
T Consensus 216 --l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~~------~-----~~~~-----------~~~~--~~~~ 257 (486)
T PF01229_consen 216 --LEFCKGN------------NCPLDFISFHSYGTDSAEDINE------N-----MYER-----------IEDS--RRLF 257 (486)
T ss_dssp --HHHHHHC------------T---SEEEEEEE-BESESE-SS------------EEEE-----------B--H--HHHH
T ss_pred --HHHHhcC------------CCCCCEEEEEecccccccccch------h-----HHhh-----------hhhH--HHHH
Confidence 1111111 1356999999998643221100 0 0000 0000 0111
Q ss_pred chHHHHHHHHHHHH-cCCCeEEEeecCCCCCCCCCcccccCch-hHHHHHHHHHHHHHHHHHcCCCeeEEEeeecccccc
Q 040158 316 PKGLQELLLYLKKK-YNNPTIYITENGLADDASLPLKVALKDS-MRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFE 393 (430)
Q Consensus 316 P~gl~~~L~~~~~~-Y~~p~I~ITENG~~~~~~~~~~~~~~D~-~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~E 393 (430)
| .+..+.+.+.+. +++.|+++||-+..... ...++|+ ++..|+-.. +++ .+|..+-++.+|++.|.||
T Consensus 258 ~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~----~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~sD~Fe 327 (486)
T PF01229_consen 258 P-ELKETRPIINDEADPNLPLYITEWNASISP----RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFSDRFE 327 (486)
T ss_dssp H-HHHHHHHHHHTSSSTT--EEEEEEES-SST----T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SBS---
T ss_pred H-HHHHHHHHHhhccCCCCceeecccccccCC----CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchhhhhh
Confidence 2 244443333333 44447999996655422 1234553 455554332 222 2566777788999999999
Q ss_pred ccCC----CCCceeeEEEcCCCCcccccchhHHHHHH
Q 040158 394 WDAG----YTVRFGITYVDFKNHLRRYLKYSAYWFKM 426 (430)
Q Consensus 394 W~~G----y~~rfGL~~VD~~~~~~R~pK~S~~~y~~ 426 (430)
=..- +---|||+. ...++|+|++-|+-
T Consensus 328 e~~~~~~pf~ggfGLlt------~~gI~KPa~~A~~~ 358 (486)
T PF01229_consen 328 ENGTPRKPFHGGFGLLT------KLGIPKPAYYAFQL 358 (486)
T ss_dssp TTSS-SSSSSS-S-SEE------CCCEE-HHHHHHHH
T ss_pred ccCCCCCceecchhhhh------ccCCCchHHHHHHH
Confidence 4222 334589984 34789999887763
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.88 E-value=2.2e-07 Score=92.88 Aligned_cols=292 Identities=16% Similarity=0.121 Sum_probs=169.7
Q ss_pred cCchhhchHH-HHHHHHHcCCCEEEec--ccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEE--EcCCCCCch
Q 040158 11 ASGFYHHYKE-DIKLMKKVGLDSFRFS--ISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFV--TLLHFDPPQ 85 (430)
Q Consensus 11 a~d~y~~~~e-Di~l~~~lG~~~~R~s--i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~H~~~P~ 85 (430)
|.++.+...+ ....+-.-.+|..-.. +-|..++|.+ |.+|.+. .|++++-+.++||++-- -+.|--.|.
T Consensus 15 av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~---g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~ 88 (320)
T PF00331_consen 15 AVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEP---GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPD 88 (320)
T ss_dssp EEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBT---TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-H
T ss_pred EechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCC---CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccc
Confidence 3444433332 3555555667777665 8999999998 9999755 78999999999999874 344667899
Q ss_pred hhHHhhCCCCChh---hHHHHHHHHHHHHHHhCC--CceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCCh
Q 040158 86 ALEEEYGGFLSPK---IVKDFVDYGDFCFKTYGD--RVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATE 160 (430)
Q Consensus 86 ~l~~~~ggw~~~~---~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~ 160 (430)
|+... .-+...+ ..+...+|.+.+++||++ +|..|-++|||-.... .+-|.++ ..
T Consensus 89 w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~------------~~ 148 (320)
T PF00331_consen 89 WVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRD------------SP 148 (320)
T ss_dssp HHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTS-------SSSSBCT------------SH
T ss_pred eeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCC-------ccccccC------------Ch
Confidence 99753 1233333 788899999999999995 8999999999963211 0011111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHH
Q 040158 161 PYIAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRI 240 (430)
Q Consensus 161 ~~~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~ 240 (430)
.++++-. ---..|.+.-|+..| +++.=+ |--..+. + +++ ..+. .+.+.
T Consensus 149 ~~~~lG~--~yi~~aF~~A~~~~P---~a~L~~--NDy~~~~----~-----~k~-~~~~---------------~lv~~ 196 (320)
T PF00331_consen 149 WYDALGP--DYIADAFRAAREADP---NAKLFY--NDYNIES----P-----AKR-DAYL---------------NLVKD 196 (320)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHT---TSEEEE--EESSTTS----T-----HHH-HHHH---------------HHHHH
T ss_pred hhhcccH--hHHHHHHHHHHHhCC---CcEEEe--ccccccc----h-----HHH-HHHH---------------HHHHH
Confidence 2222210 011234555566544 344332 2211111 1 111 1110 01111
Q ss_pred HhhcCCCCChhhhhhhcC-CcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHH
Q 040158 241 VGKRLPKFTEGESTLVKG-SFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGL 319 (430)
Q Consensus 241 l~~~lP~ft~ee~~~ikg-~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl 319 (430)
+.+ +| ++|=||++-.-.. . .. |..+
T Consensus 197 l~~-------------~gvpIdgIG~Q~H~~~----~------------------------------------~~-~~~i 222 (320)
T PF00331_consen 197 LKA-------------RGVPIDGIGLQSHFDA----G------------------------------------YP-PEQI 222 (320)
T ss_dssp HHH-------------TTHCS-EEEEEEEEET----T------------------------------------SS-HHHH
T ss_pred HHh-------------CCCccceechhhccCC----C------------------------------------CC-HHHH
Confidence 111 13 4788998754210 0 01 6789
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeeccccccccCCCC
Q 040158 320 QELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWDAGYT 399 (430)
Q Consensus 320 ~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~ 399 (430)
...|+++.+ .+. ||.|||..+...+.... .-.+..+.+++++.+..+...-.. .|.|.+.|.+.|+.+|..+..
T Consensus 223 ~~~l~~~~~-~Gl-~i~ITElDv~~~~~~~~--~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~ 296 (320)
T PF00331_consen 223 WNALDRFAS-LGL-PIHITELDVRDDDNPPD--AEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTP 296 (320)
T ss_dssp HHHHHHHHT-TTS-EEEEEEEEEESSSTTSC--HHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHS
T ss_pred HHHHHHHHH-cCC-ceEEEeeeecCCCCCcc--hHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCC
Confidence 999999964 575 69999999987421100 112456777777777665554322 899999999999999976633
Q ss_pred -CceeeEEEcCCCCcccccchhHHHHHH
Q 040158 400 -VRFGITYVDFKNHLRRYLKYSAYWFKM 426 (430)
Q Consensus 400 -~rfGL~~VD~~~~~~R~pK~S~~~y~~ 426 (430)
.+=+|+. ..-.|||+++.+.+
T Consensus 297 ~~~~~lfd------~~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 297 PDRPLLFD------EDYQPKPAYDAIVD 318 (320)
T ss_dssp EG--SSB-------TTSBB-HHHHHHHH
T ss_pred CCCCeeEC------CCcCCCHHHHHHHh
Confidence 3335553 33459999887765
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.3e-07 Score=101.54 Aligned_cols=119 Identities=22% Similarity=0.405 Sum_probs=93.7
Q ss_pred chHHHHHHHHHcCCCEEEec-ccCCccccCCCCCCCCChhHHHHHHHH-HHHHHhCCCeEEEEc-CCCCCchhhHHhh--
Q 040158 17 HYKEDIKLMKKVGLDSFRFS-ISWTRILPKGKISGGVNPLGVKFYNDL-INELLANDIKPFVTL-LHFDPPQALEEEY-- 91 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~s-i~W~ri~p~~~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~-- 91 (430)
-|.+|+++||++|+|++|.+ ++|++++|+. |.+|.. +.|.. ++.+.+.||..++.- .....|.|+..+|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pe 104 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPE 104 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChh
Confidence 36789999999999999995 5999999998 999976 56666 999999999999988 6788899988764
Q ss_pred -------------CCCCChhhHH-HHHHHHHH----HHHH-hCC--CceeEEeccCCCc-cccccccCCCCC
Q 040158 92 -------------GGFLSPKIVK-DFVDYGDF----CFKT-YGD--RVKLWASMNEPNG-MVMNGYNGGSFA 141 (430)
Q Consensus 92 -------------ggw~~~~~~~-~f~~ya~~----~~~~-~gd--~v~~w~t~NEp~~-~~~~gy~~G~~~ 141 (430)
|+|.+-+... .|.+|++. +.+| ||+ .|-.|.+-||-.. .|+..|....|+
T Consensus 105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred heEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 5675544332 46666666 7788 776 4899999998766 555555555544
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.27 E-value=7.9e-05 Score=73.60 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=61.7
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhC-
Q 040158 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYG- 92 (430)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g- 92 (430)
....++.|+.+||++|+|++|++- .|.. .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS--------------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSC
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc--------------HHHHHHHhhcCCEEEEeccccccCccc--cCCc
Confidence 457889999999999999999943 1221 156777888899998776431111110 001
Q ss_pred ---CCCChhhHHHHHHHHHHHHHHhCCC--ceeEEeccCC
Q 040158 93 ---GFLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEP 127 (430)
Q Consensus 93 ---gw~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp 127 (430)
--.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0125678888888888999999874 9999999998
No 24
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=3e-05 Score=80.06 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=85.4
Q ss_pred Cchhhch-----HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCC-hhHHHHHHHHHHHHHhCCCeEEEEcCCCCCch
Q 040158 12 SGFYHHY-----KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVN-PLGVKFYNDLINELLANDIKPFVTLLHFDPPQ 85 (430)
Q Consensus 12 ~d~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 85 (430)
.-....| ++|+..||+.|||++|+-|.|-.+.+.......+. ...+.+.+++|+...+.||.+++.||+..-+.
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~ 143 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGN 143 (407)
T ss_pred ccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCC
Confidence 3345566 89999999999999999998555555320002232 44556899999999999999999999866222
Q ss_pred hhHHhh---CCCC-ChhhHHHHHHHHHHHHHHhCC--CceeEEeccCCCc
Q 040158 86 ALEEEY---GGFL-SPKIVKDFVDYGDFCFKTYGD--RVKLWASMNEPNG 129 (430)
Q Consensus 86 ~l~~~~---ggw~-~~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~ 129 (430)
--++.- +.+. ..++++.+.+-.+.++.||++ .|-...++|||+.
T Consensus 144 ~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 212210 1222 356789999999999999997 3667889999985
No 25
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.015 Score=56.44 Aligned_cols=271 Identities=15% Similarity=0.301 Sum_probs=146.7
Q ss_pred HHH-HHHHHHcCCCEEEecccCCccccC-CC-CCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC---CCCCchhhHHhhC
Q 040158 19 KED-IKLMKKVGLDSFRFSISWTRILPK-GK-ISGGVNPLGVKFYNDLINELLANDIKPFVTLL---HFDPPQALEEEYG 92 (430)
Q Consensus 19 ~eD-i~l~~~lG~~~~R~si~W~ri~p~-~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~g 92 (430)
++| ++.||+.|+|.+|+-| |-.=..+ |. ..|.-| .++---++-.+.+++||++++..| ||.=|.-- .+-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPk 140 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPK 140 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcH
Confidence 445 6999999999999977 3211111 10 012222 144455677888899999999977 45555432 2213
Q ss_pred CCCCh---hhHHHHHHHHHHHHHHhCC---CceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHHHHHH
Q 040158 93 GFLSP---KIVKDFVDYGDFCFKTYGD---RVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAH 166 (430)
Q Consensus 93 gw~~~---~~~~~f~~ya~~~~~~~gd---~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~h 166 (430)
.|.+- +...+.-+|.+.+.+.+.+ ....-++=||-+- |+ .||-|... -+.-+-
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~--------------~f~k~a 199 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR--------------NFDKMA 199 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc--------------ChHHHH
Confidence 57653 2334455666666666644 4677778899763 22 25544321 122222
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCCCCHHHHHHHHHHhhhhcccccccccccCCcHHHHHHHhhcCC
Q 040158 167 TMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKFKTAASRQAASRARDFFFGWFADPVTFGNYPESMRRIVGKRLP 246 (430)
Q Consensus 167 n~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lP 246 (430)
.++.+ +++++|+.. +..+|-+.+. .|.+++ ..+|+.|-+.+
T Consensus 200 ~L~n~---g~~avrev~---p~ikv~lHla----~g~~n~-------------~y~~~fd~ltk---------------- 240 (403)
T COG3867 200 ALLNA---GIRAVREVS---PTIKVALHLA----EGENNS-------------LYRWIFDELTK---------------- 240 (403)
T ss_pred HHHHH---HhhhhhhcC---CCceEEEEec----CCCCCc-------------hhhHHHHHHHH----------------
Confidence 34443 455566653 3455554442 232221 11344343221
Q ss_pred CCChhhhhhhcCCcceEEeecCccceeccCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCccccchHHHHHHHHH
Q 040158 247 KFTEGESTLVKGSFDFLAVNYYTTNYADAAPPPNAFQLSYTADRQVNLTTERDGVPVGSPTALGWLFVHPKGLQELLLYL 326 (430)
Q Consensus 247 ~ft~ee~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~P~gl~~~L~~~ 326 (430)
-.-..|.||++||.-- . | .=..|...|..+
T Consensus 241 ---------~nvdfDVig~SyYpyW--h-------------------------g--------------tl~nL~~nl~di 270 (403)
T COG3867 241 ---------RNVDFDVIGSSYYPYW--H-------------------------G--------------TLNNLTTNLNDI 270 (403)
T ss_pred ---------cCCCceEEeeeccccc--c-------------------------C--------------cHHHHHhHHHHH
Confidence 1235699999999521 0 0 012577789999
Q ss_pred HHHcCCCeEEEeecCCCCC-CC-------CCccc-----ccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeecccccc
Q 040158 327 KKKYNNPTIYITENGLADD-AS-------LPLKV-----ALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFE 393 (430)
Q Consensus 327 ~~~Y~~p~I~ITENG~~~~-~~-------~~~~~-----~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~E 393 (430)
..||+.. +||.|.+.... ++ .+..+ .+.=.-...++++-++.|... -+.+=.|.|+|---=+-.
T Consensus 271 a~rY~K~-VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~wipv 347 (403)
T COG3867 271 ASRYHKD-VMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPAWIPV 347 (403)
T ss_pred HHHhcCe-EEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecccceec
Confidence 9999874 99999987431 11 01111 111123556777777666542 455668999995322222
Q ss_pred -ccCCCCCceeeEE
Q 040158 394 -WDAGYTVRFGITY 406 (430)
Q Consensus 394 -W~~Gy~~rfGL~~ 406 (430)
-..|+...||.-|
T Consensus 348 ~~g~gwat~~~~~y 361 (403)
T COG3867 348 VLGSGWATSYAAKY 361 (403)
T ss_pred cCCCccccchhhcc
Confidence 1234555555444
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.41 E-value=0.00058 Score=68.28 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=72.7
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC---C--C---CCchhhH
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL---H--F---DPPQALE 88 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H--~---~~P~~l~ 88 (430)
.|++-++.||++|+|++-+-|.|.-.+|.+ |++|.++..=.+++|+.+.++||-+++-.- | | .+|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 377889999999999999999999999998 999999988899999999999999877432 1 3 3899998
Q ss_pred HhhCCC---CChhhHHHHHHHHHHHHHHhCC-------CceeEEeccCCC
Q 040158 89 EEYGGF---LSPKIVKDFVDYGDFCFKTYGD-------RVKLWASMNEPN 128 (430)
Q Consensus 89 ~~~ggw---~~~~~~~~f~~ya~~~~~~~gd-------~v~~w~t~NEp~ 128 (430)
.+.+.. .++...+.-.+|.+.+++...+ -|-.-++=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 753332 2344556666666666655543 366677777743
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=97.02 E-value=0.0038 Score=68.90 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=84.9
Q ss_pred hchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC--------CCCCchhh
Q 040158 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL--------HFDPPQAL 87 (430)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l 87 (430)
..|++=++.||++|+|++-.=+.|.-.||.+ |++|.+|..=..++|+.+.+.||-.++-.- .-++|.||
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL 135 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWL 135 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhh
Confidence 3577889999999999999999999999998 999999999999999999999998887543 23689999
Q ss_pred HHhhCCCC----ChhhHHHHHHHHHHHHHHhC---------CCceeEEeccCC
Q 040158 88 EEEYGGFL----SPKIVKDFVDYGDFCFKTYG---------DRVKLWASMNEP 127 (430)
Q Consensus 88 ~~~~ggw~----~~~~~~~f~~ya~~~~~~~g---------d~v~~w~t~NEp 127 (430)
... .|.. ++.+.++-.+|.+.+++.+. .-|-..++=||-
T Consensus 136 ~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 136 KYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred hcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 754 4532 34566666667666666652 236667777884
No 28
>PLN02803 beta-amylase
Probab=96.64 E-value=0.0068 Score=63.25 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=81.6
Q ss_pred hchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-CC-----------CC
Q 040158 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL-HF-----------DP 83 (430)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~-----------~~ 83 (430)
...+..+..||++||+.+-+.+=|.-+|+.+. +++|+++ |+++++.+++.|++..+.|. |- -|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 181 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGP--MKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 34677999999999999999999999999875 9999877 99999999999999888775 42 49
Q ss_pred chhhHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCc
Q 040158 84 PQALEEE--------Y---GG----------------FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (430)
Q Consensus 84 P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 129 (430)
|+|..+. | .| +..+.-++.|.+|-+...+.|.+... -||.|..+
T Consensus 182 P~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 182 PPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 9998763 0 12 12233457788888777777766543 46666543
No 29
>PLN02801 beta-amylase
Probab=96.63 E-value=0.011 Score=61.48 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=76.9
Q ss_pred hchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-C-----------CCC
Q 040158 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL-H-----------FDP 83 (430)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 83 (430)
...+..+..||++||+.+-+.+=|.-||+.+. +++|+++ |+++++.+++.|++..+.|. | .-|
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P--~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP--KQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 34788899999999999999999999999875 8999877 99999999999999877765 3 248
Q ss_pred chhhHHhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCC
Q 040158 84 PQALEEEY-----------GG----------------FLSPKIVKDFVDYGDFCFKTYGDR 117 (430)
Q Consensus 84 P~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~gd~ 117 (430)
|+|+.+.- .| +..+.-++.|.+|-+-..++|.+.
T Consensus 112 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~ 172 (517)
T PLN02801 112 PQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADF 172 (517)
T ss_pred CHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99987630 12 122334688888888888888764
No 30
>PLN02161 beta-amylase
Probab=96.63 E-value=0.013 Score=60.81 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=85.3
Q ss_pred CchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-CC---------
Q 040158 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL-HF--------- 81 (430)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~--------- 81 (430)
..+....+..+..||.+||+.+-+.+=|.-+|+.+. +++|+++ |+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP--LEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 466777888999999999999999999999999875 9999877 99999999999999888775 43
Q ss_pred --CCchhhHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCc
Q 040158 82 --DPPQALEEE--------Y---GG----------------FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (430)
Q Consensus 82 --~~P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 129 (430)
-||+|+.+. | .| +..+.-++.|.+|-+-..++|.+... -||.|..+
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 399998753 0 12 22233457788888877777776543 36666543
No 31
>PLN00197 beta-amylase; Provisional
Probab=96.59 E-value=0.0079 Score=62.98 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=81.7
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-CC-----------CCc
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL-HF-----------DPP 84 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~-----------~~P 84 (430)
..+..+..||++||+.+-+.+=|.-+|+.+. +++|+++ |+++++.+++.|++..+.|. |- -||
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p--~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESP--GVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 4788899999999999999999999999875 9999877 99999999999999888775 42 499
Q ss_pred hhhHHhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCc
Q 040158 85 QALEEEY-----------GGF----------------LSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (430)
Q Consensus 85 ~~l~~~~-----------ggw----------------~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 129 (430)
+|..+.- .|- ..+.-++.|.+|-+-.-++|.+... -||.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 9987630 121 1222367888888887777776544 35666543
No 32
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.51 E-value=0.0055 Score=62.32 Aligned_cols=106 Identities=17% Similarity=0.317 Sum_probs=79.8
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-C-----------CC
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL-H-----------FD 82 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 82 (430)
+...+.+++.||++||+.+-..+=|.-+|+.+. +++|+++ |+++++.+++.|++..+.|. | .-
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p--~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP--QQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST--TB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC--CccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 447889999999999999999999999999864 8999866 99999999999999988763 4 35
Q ss_pred CchhhHHh-----------hC--------CCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCC
Q 040158 83 PPQALEEE-----------YG--------GFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (430)
Q Consensus 83 ~P~~l~~~-----------~g--------gw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 128 (430)
||.|+.+. .| .|....+++.|.+|-+...++|.+.. -||-|..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 89998753 12 24444458999999999999987754 4555543
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.50 E-value=0.026 Score=55.65 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=62.4
Q ss_pred HHHHHHHcCCCEEEecc--cCCcc--------ccCCC-CC-----CCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 21 DIKLMKKVGLDSFRFSI--SWTRI--------LPKGK-IS-----GGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 21 Di~l~~~lG~~~~R~si--~W~ri--------~p~~~-~~-----g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
=++..|+-|||.+|+.+ .|... .|-.. .. ..+|++-+++.+++|+.|.++||.|.+.+.| +.|
T Consensus 35 yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~~ 113 (289)
T PF13204_consen 35 YLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GCP 113 (289)
T ss_dssp HHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HHH
T ss_pred HHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CCc
Confidence 36788999999999998 44433 11100 00 1379999999999999999999999887665 222
Q ss_pred hhhHHhhCCCCC---hhhHHHHHHHHHHHHHHhCCC-ceeEEeccCC
Q 040158 85 QALEEEYGGFLS---PKIVKDFVDYGDFCFKTYGDR-VKLWASMNEP 127 (430)
Q Consensus 85 ~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~gd~-v~~w~t~NEp 127 (430)
- .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 114 ~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 114 Y---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp H---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred c---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 1 11 44533 224677789999999999997 5789998885
No 34
>PLN02905 beta-amylase
Probab=96.28 E-value=0.023 Score=60.33 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=78.3
Q ss_pred CchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-CC---------
Q 040158 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL-HF--------- 81 (430)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~--------- 81 (430)
..+....+..+..||++||+.+-+.+=|.-+|+.+. +++||++ |.++++.+++.||+..+.|. |-
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP--~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP--QEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 345666888999999999999999999999999875 9999877 99999999999999888775 42
Q ss_pred --CCchhhHHh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 040158 82 --DPPQALEEE--------Y---GGF----------------LSPKIVKDFVDYGDFCFKTYGDR 117 (430)
Q Consensus 82 --~~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~gd~ 117 (430)
-||+|..+. | .|. ..+.-++.|.+|.+-..+.|.+.
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 499998763 0 121 12334577777777776776553
No 35
>PLN02705 beta-amylase
Probab=96.28 E-value=0.021 Score=60.41 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=76.1
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-CC-----------C
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL-HF-----------D 82 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~-----------~ 82 (430)
-...+..+..||++||+.+-+.+=|.-||+.+. +++||++ |.++++.+++.||+..+.|. |- -
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P--~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP--QKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 345788899999999999999999999999875 8999877 99999999999999887765 42 4
Q ss_pred CchhhHHh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 040158 83 PPQALEEE--------Y---GGF----------------LSPKIVKDFVDYGDFCFKTYGDR 117 (430)
Q Consensus 83 ~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~gd~ 117 (430)
||+|+.+. | .|. ..+.-++.|.+|.+..-+.|.+.
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99998763 0 121 12234577788877777777653
No 36
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.20 E-value=0.011 Score=59.80 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=55.8
Q ss_pred HHcCCCEEEecc---cC------------CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHh
Q 040158 26 KKVGLDSFRFSI---SW------------TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEE 90 (430)
Q Consensus 26 ~~lG~~~~R~si---~W------------~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 90 (430)
+-+|++.+||.| ++ .|.+--...+|.+|+.+=+-=+.++++.+++|++-++ ++=+..|.|+-..
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 349999999988 33 3322111123778876655566789999999999877 4556777776542
Q ss_pred hC----C-----CCChhhHHHHHHHHHHHHHHhC---CCceeEEeccCCCc
Q 040158 91 YG----G-----FLSPKIVKDFVDYGDFCFKTYG---DRVKLWASMNEPNG 129 (430)
Q Consensus 91 ~g----g-----w~~~~~~~~f~~ya~~~~~~~g---d~v~~w~t~NEp~~ 129 (430)
| + =+.++..+.||.|-..|+++|. =.+.+--++|||+.
T Consensus 136 -G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 -GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp -SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred -CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 2 1 1446788999999999999993 35899999999984
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.30 E-value=0.17 Score=45.77 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=67.1
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccc-----cCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhh
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRIL-----PKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEY 91 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 91 (430)
+|++++..|+++|++++=+- |+... |.....+.+.....+..+.+++++.+.||+.++.|+. -|.|.+.
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 68999999999999998433 43332 2210001233344577899999999999999999974 3455542
Q ss_pred CCCCChh-hHHHHHHHHHHHHHHhCCC--ceeEEeccCCC
Q 040158 92 GGFLSPK-IVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (430)
Q Consensus 92 ggw~~~~-~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 128 (430)
.+.+ -++.=..-++.+.++||.+ +..|-+-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1222 2233344667788889874 67777777765
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.94 E-value=0.26 Score=56.88 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=64.4
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC---CCCCchhhHHh
Q 040158 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL---HFDPPQALEEE 90 (430)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~ 90 (430)
....++.||.+||++|+|++|+| ..|.. + ++.+.|-+.||-++--.. |--.|. .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------p-------~fydlcDe~GilV~dE~~~e~hg~~~~---~- 425 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------P-------LWYELCDRYGLYVVDEANIETHGMVPM---N- 425 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHcCCEEEEecCccccCCccc---c-
Confidence 45678999999999999999996 23332 1 456778889998886642 111110 0
Q ss_pred hCCCCChhhHHHHHHHHHHHHHHhCCC--ceeEEeccCCC
Q 040158 91 YGGFLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (430)
Q Consensus 91 ~ggw~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 128 (430)
....+++..+.+.+=++.+++|.+++ |-.|...||+.
T Consensus 426 -~~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 426 -RLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 01124666777777788899999885 99999999975
No 39
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=93.81 E-value=0.25 Score=47.33 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeecccccc
Q 040158 317 KGLQELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFE 393 (430)
Q Consensus 317 ~gl~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~E 393 (430)
.++...|..++++|+.| |.|||-|+.... ..-.+..-..|+++-+.. ++.---|.+|+..+.++..+
T Consensus 151 ~~~~~~i~~~~~~~~kP-IWITEf~~~~~~-----~~~~~~~~~~fl~~~~~~----ld~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYGKP-IWITEFGCWNGG-----SQGSDEQQASFLRQALPW----LDSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHHhCCC-EEEEeecccCCC-----CCCCHHHHHHHHHHHHHH----HhcCCCeeEEEecccccccC
Confidence 36888999999999975 999999986511 112455556666555544 44446799999999544433
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.92 E-value=0.48 Score=54.73 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=64.0
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc----CCCCCchhhHH
Q 040158 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL----LHFDPPQALEE 89 (430)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL----~H~~~P~~l~~ 89 (430)
....+++||++||++|+|++|+| ..|.. ..+.+.|-+.||-++--. +.|.....
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~--------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~--- 410 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND--------------PRFYELCDIYGLFVMAETDVESHGFANVGD--- 410 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHCCCEEEECCcccccCcccccc---
Confidence 35678999999999999999996 24442 156778888999877643 11211100
Q ss_pred hhCCC--CChhhHHHHHHHHHHHHHHhCCC--ceeEEeccCCC
Q 040158 90 EYGGF--LSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (430)
Q Consensus 90 ~~ggw--~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 128 (430)
+ .+ .++...+.|.+=++.+++|.+++ |-.|.+-||..
T Consensus 411 -~-~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 411 -I-SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred -c-ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 0 01 23456677777788999999885 99999999973
No 41
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.36 E-value=0.69 Score=51.83 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=66.8
Q ss_pred CchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhh
Q 040158 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEY 91 (430)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 91 (430)
+-.+..+..|+++||++|+|++|.| -.|... ++.+.|-+.||-++=-..+ +- +
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~~--------------~~ydLcDelGllV~~Ea~~-----~~---~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNSE--------------EFYDLCDELGLLVIDEAMI-----ET---H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCCH--------------HHHHHHHHhCcEEEEecch-----hh---c
Confidence 4445668999999999999999998 555541 5566777789988865432 11 2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCC--ceeEEeccCCC
Q 040158 92 GGFLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (430)
Q Consensus 92 ggw~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 128 (430)
++...++..+...+=++.+++|-.++ |-.|..-||..
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 44455666777777788889998874 99999999965
No 42
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.95 E-value=0.38 Score=51.68 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=83.7
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC--------CCCCchhhH
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL--------HFDPPQALE 88 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~ 88 (430)
.|++=|+.+|++|+|+.-.=+-|.-.+|.+ |++|.+|.-=..++|....++|+-.++-+- +=.+|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 377779999999999999999999999998 999999988888899999999987766432 446798887
Q ss_pred HhhCCC----CChhhHHHHHHHHHHHHHHhC-------CCceeEEeccCCC
Q 040158 89 EEYGGF----LSPKIVKDFVDYGDFCFKTYG-------DRVKLWASMNEPN 128 (430)
Q Consensus 89 ~~~ggw----~~~~~~~~f~~ya~~~~~~~g-------d~v~~w~t~NEp~ 128 (430)
.. .|- .|+.+-.+..+|.+.++...+ .=|-.-++=||-.
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 65 442 356677888888888876332 2355556666654
No 43
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=90.96 E-value=1.1 Score=44.42 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=53.1
Q ss_pred hchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCC
Q 040158 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (430)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 95 (430)
+..+.||.+||+||+|+.|+= -|-|.. | ++.....|.++||=.+++|.. |.---.+...|.
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~~------n------Hd~CM~~~~~aGIYvi~Dl~~---p~~sI~r~~P~~ 113 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPSK------N------HDECMSAFADAGIYVILDLNT---PNGSINRSDPAP 113 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-B---TTBS--TTS---
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCCC------C------HHHHHHHHHhCCCEEEEecCC---CCccccCCCCcC
Confidence 367899999999999999973 233332 2 788999999999999999963 421112211111
Q ss_pred ChhhHHHHHHHHHHHHHHhC--CCceeEEeccCC
Q 040158 96 SPKIVKDFVDYGDFCFKTYG--DRVKLWASMNEP 127 (430)
Q Consensus 96 ~~~~~~~f~~ya~~~~~~~g--d~v~~w~t~NEp 127 (430)
.- ..+.|.+|.+. ++.|. +.|-.+..=||-
T Consensus 114 sw-~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 114 SW-NTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp ----HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred CC-CHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 10 24556666555 44444 357777777774
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=88.26 E-value=0.69 Score=47.15 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=69.4
Q ss_pred HHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCC--hhhHHH
Q 040158 25 MKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLS--PKIVKD 102 (430)
Q Consensus 25 ~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~--~~~~~~ 102 (430)
=+|+||+..|.---|.-++... -++ ..++++++|.+.+.|+.-+.+-.||+.+.-....+.+=.. ....+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~----~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL----FYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeeccc----cCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 3689999999888888333332 345 4789999999999994444455677776544332333222 247899
Q ss_pred HHHHHHHHHHHhCCC-c--eeEEeccCCCcc
Q 040158 103 FVDYGDFCFKTYGDR-V--KLWASMNEPNGM 130 (430)
Q Consensus 103 f~~ya~~~~~~~gd~-v--~~w~t~NEp~~~ 130 (430)
++.++..|+.++|-+ | -....+||||..
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 999999999999953 3 445689999965
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=84.54 E-value=0.53 Score=48.87 Aligned_cols=109 Identities=23% Similarity=0.181 Sum_probs=78.5
Q ss_pred hHHHHHHHHHcCCCEEEecccC-CccccCCCCCCCCChhH-HHHHHHHHHHHHhCCCeEEEEcC----CCCCchhhHHhh
Q 040158 18 YKEDIKLMKKVGLDSFRFSISW-TRILPKGKISGGVNPLG-VKFYNDLINELLANDIKPFVTLL----HFDPPQALEEEY 91 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W-~ri~p~~~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~ 91 (430)
.+.|++.++.+|++..|++|-= .. .-+.. |..|.+. +.+-+.+++.+...+|+.++||. |+.--.|-..=.
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEd-c~d~~--G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGED-CRDKE--GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhcccccccCccceeEEEEEecCcc-hhhhh--ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 4568999999999999999532 22 22222 7777776 89999999999999999999976 332222211000
Q ss_pred CC------CCChhhHHHHHHHHHHHHHHhCCC--ceeEEeccCCCc
Q 040158 92 GG------FLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPNG 129 (430)
Q Consensus 92 gg------w~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~ 129 (430)
|+ ...+.+..-|.+|.+.+++.|+-. +..|..-|||-+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 11 234567788999999999988864 789999999766
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=81.97 E-value=4.7 Score=36.30 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=45.1
Q ss_pred chhhchHHHHHHHHHcCCCEEEecccCCccc---------cCCCCCCCCC--hhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRIL---------PKGKISGGVN--PLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~---------p~~~~~g~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
..+....+-++-+++||++++-++=-+.... |... -.++ .-..+=++++|++|.++||++++.+-
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~--~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDY--KQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcccc--CCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4467778888899999999998876444432 1110 0111 11245588999999999999999863
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=77.04 E-value=23 Score=35.14 Aligned_cols=87 Identities=20% Similarity=0.370 Sum_probs=61.4
Q ss_pred hhchHHHHHHHHHcCCCEEEecc---cCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhh
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSI---SWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEY 91 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si---~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 91 (430)
..||.+-..+++++|+|+.-+.= .-..+.| +-++-..++-+.++..||++.+++. |..|..+
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~----------~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l---- 120 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP----------EYLDKVARLADVFRPYGIKVYLSVN-FASPIEL---- 120 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST----------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH----------HHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----
Confidence 46788889999999999987652 2222222 2367788999999999999999975 7888654
Q ss_pred CCC-----CChhhHHHHHHHHHHHHHHhCC
Q 040158 92 GGF-----LSPKIVKDFVDYGDFCFKTYGD 116 (430)
Q Consensus 92 ggw-----~~~~~~~~f~~ya~~~~~~~gd 116 (430)
||- ++++++.++.+=++.+.++..|
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 553 5688999999999999998866
No 48
>PLN02361 alpha-amylase
Probab=73.50 E-value=10 Score=39.20 Aligned_cols=66 Identities=11% Similarity=0.284 Sum_probs=45.7
Q ss_pred chhhchHHHHHHHHHcCCCEEEecccCCccccCCCCC---CCCCh--hHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKIS---GGVNP--LGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~---g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
.+|....+-++-|++||++++=++=.....-+.|... -.+|. -..+=++++|++|.++||++|+.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3788999999999999999998875443333332100 00111 113448899999999999999974
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=70.47 E-value=16 Score=31.59 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEeccc------C--CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 20 EDIKLMKKVGLDSFRFSIS------W--TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 20 eDi~l~~~lG~~~~R~si~------W--~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
+=++.||++|+|+.-+... | +++.+. ....+ -+.+.++|++|.++||++++=+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~-----hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPR-----HPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcC-----CCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 3468999999999999332 2 233222 12223 47789999999999999998654
No 50
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.89 E-value=27 Score=36.74 Aligned_cols=113 Identities=16% Similarity=0.309 Sum_probs=72.5
Q ss_pred hhchHHHHHHHHHcCCCEEEec----ccCCccccCC--------------------------CCCCCCChhH----HHHH
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFS----ISWTRILPKG--------------------------KISGGVNPLG----VKFY 60 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~p~~--------------------------~~~g~~n~~~----~~~y 60 (430)
|.+|+..|+.|+=.|+|..=.- +-|.+|+-.- .-+|...++. +--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6789999999999999965433 2355544321 0024433322 1223
Q ss_pred HHHHHHHHhCCCeEEEEcCCCCCchhhHHhh--------CCCC---------------ChhhHHHHHHHHHHHHHHhCCC
Q 040158 61 NDLINELLANDIKPFVTLLHFDPPQALEEEY--------GGFL---------------SPKIVKDFVDYGDFCFKTYGDR 117 (430)
Q Consensus 61 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw~---------------~~~~~~~f~~ya~~~~~~~gd~ 117 (430)
.++|+.+++-||+|++.-+-=-.|..|..-| +.|. .+-+++-=..|-+...+.||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 5899999999999999877555788876543 2232 2335555666777788999963
Q ss_pred ceeE--EeccCC
Q 040158 118 VKLW--ASMNEP 127 (430)
Q Consensus 118 v~~w--~t~NEp 127 (430)
-..+ -||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2222 389984
No 51
>PLN00196 alpha-amylase; Provisional
Probab=66.41 E-value=13 Score=38.71 Aligned_cols=65 Identities=8% Similarity=0.184 Sum_probs=44.2
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccCCccccCCCCC---CCCCh---hHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKIS---GGVNP---LGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~---g~~n~---~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
+|....+.+.-|++|||+++=++=......+.|... -.+|. -.-+=++++|+++.++||++|+..
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 466778899999999999998885444332222100 01111 112348899999999999999974
No 52
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=66.18 E-value=5.6 Score=39.68 Aligned_cols=82 Identities=18% Similarity=0.394 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH--cCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCee-----EEEeeecccc
Q 040158 319 LQELLLYLKKK--YNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVK-----AYYIWTFWDD 391 (430)
Q Consensus 319 l~~~L~~~~~~--Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~-----GY~~WSl~Dn 391 (430)
+.+.+...-++ +++.+|+|||.|++..... .... .==+.+.+.+.+.+.+|.+.+ -+++-+++|-
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~--~a~~------~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE 283 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP--GATP------ENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE 283 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSST--TCSH------HHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCC--CCCc------chhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC
Confidence 34455555555 4456799999999985321 0111 112344455555555666643 4677888874
Q ss_pred ccccCC--CCCceeeEEEcC
Q 040158 392 FEWDAG--YTVRFGITYVDF 409 (430)
Q Consensus 392 ~EW~~G--y~~rfGL~~VD~ 409 (430)
.|-.| .++.|||++-|.
T Consensus 284 -~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 284 -NWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp -TTSSSSGGGGG--SB-TTS
T ss_pred -cCCCCCcccceeeeECCCC
Confidence 45433 578999997654
No 53
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=64.99 E-value=13 Score=37.80 Aligned_cols=106 Identities=13% Similarity=0.216 Sum_probs=59.1
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCC-CCCCCChhHHHHHHHHHHHHHhCCCeEE-EEcCCCCCchhhHHhhCCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGK-ISGGVNPLGVKFYNDLINELLANDIKPF-VTLLHFDPPQALEEEYGGF 94 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw 94 (430)
.-+|.++.|+++|++.+-+++ ..+-++-- .-|... ..+-..+.|+.+++.|+..+ ++| =+++|.
T Consensus 97 ~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg--------- 162 (374)
T PRK05799 97 FTEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN--------- 162 (374)
T ss_pred CCHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC---------
Confidence 346889999999999555554 33333210 002211 24457788999999999744 444 245552
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCC
Q 040158 95 LSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGS 139 (430)
Q Consensus 95 ~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~ 139 (430)
++.+.|.+-.+.+.+.=-++|..+...-+|++....-+..|.
T Consensus 163 ---qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~ 204 (374)
T PRK05799 163 ---QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGK 204 (374)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCC
Confidence 124455555555543322566666655588754433333343
No 54
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=63.73 E-value=13 Score=35.55 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcC
Q 040158 58 KFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
+.++.+|+.-+++|..+|+||-
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~p 45 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLP 45 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHHhhhcCcceeEeec
Confidence 6689999999999999999985
No 55
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=63.22 E-value=26 Score=33.05 Aligned_cols=75 Identities=16% Similarity=0.391 Sum_probs=49.8
Q ss_pred hhchHHHHHHHHHcCCCEEEe----------------------cccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCC
Q 040158 15 YHHYKEDIKLMKKVGLDSFRF----------------------SISWTRILPKGKISGGVNPLGVKFYNDLINELLANDI 72 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi 72 (430)
--.-+.=|+||++||.++..| ++ | +||.| | +| ++.+..++..+++.|+
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG---G-Id---l~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG---G-ID---LDNFEEIVQIALDAGV 203 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC---C-cc---HHhHHHHHHHHHHcCC
Confidence 344566799999999998876 33 3 58876 4 66 6778999999999999
Q ss_pred eEEEEcCCCCCchhhHHhhCCCCChhhHHHH
Q 040158 73 KPFVTLLHFDPPQALEEEYGGFLSPKIVKDF 103 (430)
Q Consensus 73 ~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f 103 (430)
+-++- |=|.. +-++-.|-+.++-+...
T Consensus 204 ~kviP-HIYss---iIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 204 EKVIP-HVYSS---IIDKETGNTRVEDVKQL 230 (236)
T ss_pred Ceecc-cccee---ccccccCCCCHHHHHHH
Confidence 87753 11111 12333566676655443
No 56
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=62.90 E-value=4.7 Score=32.08 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=14.0
Q ss_pred HHHHhCC--CceeEEeccC-CC
Q 040158 110 CFKTYGD--RVKLWASMNE-PN 128 (430)
Q Consensus 110 ~~~~~gd--~v~~w~t~NE-p~ 128 (430)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677875 7999999999 66
No 57
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=61.30 E-value=37 Score=34.19 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHHHHHHcCC--CEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC-CC----CchhhHHhhC
Q 040158 20 EDIKLMKKVGL--DSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLH-FD----PPQALEEEYG 92 (430)
Q Consensus 20 eDi~l~~~lG~--~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~----~P~~l~~~~g 92 (430)
+=++.+++.+| +++=+.|.|..- .+. -.+|.+.+.--..++++|.+.|++.++.+.- .. .|.. ..+.
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~~~--~~~--Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~--~~~p 101 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQDN--YRT--FTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSP--GLYP 101 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchhcC--CCc--eeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCC--ceee
Confidence 33555666565 466666766532 121 3455555444578999999999998776541 11 1100 0022
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcccccc
Q 040158 93 GFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNG 134 (430)
Q Consensus 93 gw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~g 134 (430)
.|.|++..+.|.+..+.+.+ .|- .-+|+=+|||.+++..+
T Consensus 102 Dftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~~ 141 (332)
T cd06601 102 DLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSYG 141 (332)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCCC
Confidence 47888888887766554432 342 34899999999876543
No 58
>PLN02784 alpha-amylase
Probab=59.34 E-value=28 Score=39.45 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=46.4
Q ss_pred chhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCC---CCCh--hHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISG---GVNP--LGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g---~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
.+|....+.++-|++||++++=++=......+.|.... .+|. -..+=++.+|++|.++||.+|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46888999999999999999988765444433332000 0111 123458899999999999999974
No 59
>PRK12313 glycogen branching enzyme; Provisional
Probab=59.12 E-value=48 Score=36.43 Aligned_cols=98 Identities=16% Similarity=0.274 Sum_probs=61.3
Q ss_pred hhchHHH-HHHHHHcCCCEEEecc--------cC-------CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 15 YHHYKED-IKLMKKVGLDSFRFSI--------SW-------TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 15 y~~~~eD-i~l~~~lG~~~~R~si--------~W-------~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
|.-..+. ++-||+||++++=+.= +| -.|.|.= |. .+=++++|++|.++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 4555667 4999999999997652 22 1122221 32 3448899999999999999984
Q ss_pred --CCCCCch----hhH--------H---h-hCCC-------CChhhHHHHHHHHHHHHHHhCCCceeEE
Q 040158 79 --LHFDPPQ----ALE--------E---E-YGGF-------LSPKIVKDFVDYGDFCFKTYGDRVKLWA 122 (430)
Q Consensus 79 --~H~~~P~----~l~--------~---~-~ggw-------~~~~~~~~f~~ya~~~~~~~gd~v~~w~ 122 (430)
.|..... ++. + . +.+| .++++.+.+.+-++.-++.|| |+.|=
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~R 307 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGLR 307 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEEE
Confidence 4653211 110 0 0 0123 367788888888888888886 44443
No 60
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=58.08 E-value=20 Score=34.41 Aligned_cols=59 Identities=17% Similarity=0.370 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCC-------CCC--hhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISG-------GVN--PLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g-------~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
..+-++-||+|||+++-++=-+. .|... .| .+| .-..+=+.++|++|.++||++|+++-
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 35668899999999999884333 11010 01 011 12355688999999999999999863
No 61
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=57.85 E-value=28 Score=34.17 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=61.2
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLS 96 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~ 96 (430)
+-..|++++++.|++.++++++=|...-.... +.--++.++-..++|..+++.|+++.+++-+|+-|-
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~----------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM----------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------
Confidence 34678999999999999999865554433210 233467788999999999999999999998766552
Q ss_pred hhhHHHHHHHHHHHHH
Q 040158 97 PKIVKDFVDYGDFCFK 112 (430)
Q Consensus 97 ~~~~~~f~~ya~~~~~ 112 (430)
+..++.+.+.++.+.+
T Consensus 143 r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 143 RDSPDYVFQLVDFLSD 158 (280)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 1124677777777654
No 62
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=57.84 E-value=40 Score=32.88 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=39.3
Q ss_pred CccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 9 DIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 9 ~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
|-+|-.=..|..|+++++..+. ..|.= | .|... ..++..++.+.|++.++.++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-------------~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRTY-------------G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEEe-------------e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 4468888889999999999886 44431 2 23333 45889999999999998885
No 63
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=57.46 E-value=49 Score=33.26 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhH
Q 040158 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIV 100 (430)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 100 (430)
-|++|.+.|++-+=.|+ +.|++ .+...++.+.++++.+.+.|+++||+.. |+-|.+ -||. ...+
T Consensus 21 Yi~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l 84 (360)
T COG3589 21 YIDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHH
Confidence 37888999988666654 23333 3345789999999999999999999985 887765 4553 3344
Q ss_pred HHHHHH
Q 040158 101 KDFVDY 106 (430)
Q Consensus 101 ~~f~~y 106 (430)
+.|-+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 544444
No 64
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=57.31 E-value=52 Score=32.76 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCC-EEEecc-cC-Ccccc-C-CCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCC
Q 040158 19 KEDIKLMKKVGLD-SFRFSI-SW-TRILP-K-GKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGG 93 (430)
Q Consensus 19 ~eDi~l~~~lG~~-~~R~si-~W-~ri~p-~-~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 93 (430)
+|.+++|+++|++ .+=+++ +- .++.- . +. | .+ .+-+.+.++.++++||.+.+.+. +++|.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inK--g-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~-------- 181 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINK--G-ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF-------- 181 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCC--C-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------
Confidence 7889999999998 466666 22 22221 1 10 2 22 35578999999999999776653 34441
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCCC
Q 040158 94 FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAP 142 (430)
Q Consensus 94 w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~P 142 (430)
....++++.+.+.++.+.+ +++.|....+.=+|++....-|..|.|.|
T Consensus 182 ~se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 182 LSEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred CChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 1223567777777777654 45788887777777765444466677755
No 65
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=56.20 E-value=85 Score=33.48 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeecc-c---cccccCC
Q 040158 322 LLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFW-D---DFEWDAG 397 (430)
Q Consensus 322 ~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~-D---n~EW~~G 397 (430)
.|..++++|++..|+-||...+..... ....+-.-.|. ..+...+...+..| +.||+.|.|+ | ..-|..+
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~-~~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n 392 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD-TSVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGN 392 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS--SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT--
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc-cccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCC
Confidence 577899999987899999976652100 00011122333 23444555666677 5799999985 3 2234444
Q ss_pred CCCceeeEEEcCCCCcccccchhHHHHHH
Q 040158 398 YTVRFGITYVDFKNHLRRYLKYSAYWFKM 426 (430)
Q Consensus 398 y~~rfGL~~VD~~~~~~R~pK~S~~~y~~ 426 (430)
+... .+-||-+ +.+-+..+.++..+.
T Consensus 393 ~~d~--~iivd~~-~~~~~~~p~yY~~gH 418 (496)
T PF02055_consen 393 FCDA--PIIVDSD-TGEFYKQPEYYAMGH 418 (496)
T ss_dssp -B----SEEEEGG-GTEEEE-HHHHHHHH
T ss_pred CCCc--eeEEEcC-CCeEEEcHHHHHHHH
Confidence 4433 3447765 455555666665544
No 66
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=55.69 E-value=58 Score=35.11 Aligned_cols=61 Identities=15% Similarity=0.359 Sum_probs=40.2
Q ss_pred hhchHHHHHHHHHcCCCEEEecc--c------CC-----ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc--C
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSI--S------WT-----RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL--L 79 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si--~------W~-----ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~ 79 (430)
+.-..+-++-||+||++++-+.= + |. -..|++.. |. .+=++++|++|.++||++|+.+ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 44455668999999999997752 1 21 01111110 22 3448899999999999999974 3
Q ss_pred CC
Q 040158 80 HF 81 (430)
Q Consensus 80 H~ 81 (430)
|.
T Consensus 184 H~ 185 (542)
T TIGR02402 184 HF 185 (542)
T ss_pred CC
Confidence 54
No 67
>PRK05402 glycogen branching enzyme; Provisional
Probab=55.53 E-value=74 Score=35.63 Aligned_cols=98 Identities=10% Similarity=0.180 Sum_probs=60.4
Q ss_pred hhchHHHH-HHHHHcCCCEEEeccc--------CC-------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 15 YHHYKEDI-KLMKKVGLDSFRFSIS--------WT-------RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 15 y~~~~eDi-~l~~~lG~~~~R~si~--------W~-------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
|.-..+.+ +-||+||++++=+.=- |. .|.|.= |. .+=++++|++|.++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~---Gt-----~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF---GT-----PDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 34444553 7889999999977631 21 122221 32 3448899999999999999984
Q ss_pred --CCCCCc-----------hhhHH-----hhCC-------CCChhhHHHHHHHHHHHHHHhCCCceeEE
Q 040158 79 --LHFDPP-----------QALEE-----EYGG-------FLSPKIVKDFVDYGDFCFKTYGDRVKLWA 122 (430)
Q Consensus 79 --~H~~~P-----------~~l~~-----~~gg-------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~ 122 (430)
.|+... .+... .+.. +.++++.+.+.+-++.-++.|+ |+.|=
T Consensus 336 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R 402 (726)
T PRK05402 336 VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLR 402 (726)
T ss_pred CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEE
Confidence 465321 11000 0112 3467788888888888888885 44444
No 68
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=54.82 E-value=62 Score=32.22 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=64.9
Q ss_pred hhchHHHHHHHHHcCCCEEEecccC-------CccccCCC-CCCC-CChhHHHHHHHHHHHHHhCCCeEEEEc----CC-
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISW-------TRILPKGK-ISGG-VNPLGVKFYNDLINELLANDIKPFVTL----LH- 80 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W-------~ri~p~~~-~~g~-~n~~~~~~y~~~i~~l~~~gi~p~vtL----~H- 80 (430)
-...++-++.|+++|+|++=+.+.+ |.++|... ..|. ....+.+.+..+|+++.++||+...-+ ..
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3456777899999999987665533 34444210 0011 111256778899999999999987543 11
Q ss_pred ------CCCchhhHHh-------h----C--CCCC---hhhHHHHHHHHHHHHHHhC
Q 040158 81 ------FDPPQALEEE-------Y----G--GFLS---PKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 81 ------~~~P~~l~~~-------~----g--gw~~---~~~~~~f~~ya~~~~~~~g 115 (430)
-..|.|+... + + .|.| |++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1235554311 1 1 1544 6889999999999999995
No 69
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=54.69 E-value=93 Score=30.96 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=64.8
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC---CCchh--hHHh--
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF---DPPQA--LEEE-- 90 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~--l~~~-- 90 (430)
..+-++.+++.|+..==+-|+|.-....+--+-.+|.+-+.--.++|++|.++|++.++.+.-+ +.+.. ..++
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 4455778888876644444443211111100023566555567899999999999988876422 11111 0000
Q ss_pred -------------------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccc
Q 040158 91 -------------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMV 131 (430)
Q Consensus 91 -------------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 131 (430)
+-.|+||+..+.|.+..+..+...|= --+|+=+|||..+.
T Consensus 106 ~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 106 LIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred EEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 01267888888777655544444442 46788999998653
No 70
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=53.04 E-value=57 Score=36.80 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=65.1
Q ss_pred cCCCEEEeccc-CCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC---CCCchh--hHHh-----------
Q 040158 28 VGLDSFRFSIS-WTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLH---FDPPQA--LEEE----------- 90 (430)
Q Consensus 28 lG~~~~R~si~-W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~--l~~~----------- 90 (430)
+=++.+++.+. |.+ ..+. -.+|..-+---+.+|+.|.+.||+.++-+.. -|.|+. +.++
T Consensus 294 IP~d~~~lD~~~~~~--~~~~--F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~ 369 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGD--FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEI 369 (772)
T ss_pred CcceEEEEeehhhhc--cccc--eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCE
Confidence 44678999995 876 2221 3455554555669999999999999988763 233322 1111
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccc
Q 040158 91 -----------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMN 133 (430)
Q Consensus 91 -----------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~ 133 (430)
+-.++||+..++|.+....-+..+| -.-+|.=+|||.+....
T Consensus 370 ~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 370 YQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0127899999999873322233333 25789999999987544
No 71
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=52.60 E-value=29 Score=36.62 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=42.6
Q ss_pred chhhchHHHHHHHHHcCCCEEEecccCCcc--------ccCCCC-------CCCCChh--HHHHHHHHHHHHHhCCCeEE
Q 040158 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRI--------LPKGKI-------SGGVNPL--GVKFYNDLINELLANDIKPF 75 (430)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri--------~p~~~~-------~g~~n~~--~~~~y~~~i~~l~~~gi~p~ 75 (430)
+.|.-..+-++-|++||++++=++=...-. -|.-.. .|.+|.. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556778999999999999887533221 111100 0011211 23448899999999999999
Q ss_pred EEc
Q 040158 76 VTL 78 (430)
Q Consensus 76 vtL 78 (430)
+.+
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 975
No 72
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=52.07 E-value=39 Score=34.40 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=47.3
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
.++|++.+.+.|++.+|++++-|.+.-.... +.-.++.++-..+.|..+++.|++..+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5899999999999999999887766433110 222345678889999999999999888763
No 73
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=51.89 E-value=46 Score=32.73 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=62.2
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC-CCCchhhHHhhCCCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLH-FDPPQALEEEYGGFL 95 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~ 95 (430)
.-.+|+++..+.|++.+++.++=|...-.... +.--++.++-..+.|+..+++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~-~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNI-NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC
Confidence 35889999999999999999866544322110 3334567888999999999999999877763 5555 23433
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 040158 96 SPKIVKDFVDYGDFCFKT 113 (430)
Q Consensus 96 ~~~~~~~f~~ya~~~~~~ 113 (430)
+ .+.+.++++.+.+.
T Consensus 153 ~---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 P---PEAVADVAERLFAL 167 (287)
T ss_pred C---HHHHHHHHHHHHHc
Confidence 3 57778888877653
No 74
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=51.88 E-value=29 Score=37.40 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=42.1
Q ss_pred chhhchHHHHHHHHHcCCCEEEecccCCccccC-CCC-C--CCCCh--hHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPK-GKI-S--GGVNP--LGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~-~~~-~--g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
.-+.-..+-++-+++||++++=++=-...-.-. |.. . -.+|+ -..+=++++|+++.++||++|+++-
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445566778899999999999776332211000 000 0 00111 1235588999999999999999863
No 75
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=51.85 E-value=73 Score=31.50 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=51.2
Q ss_pred HHHHHcCCCEEEeccc--CCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhH
Q 040158 23 KLMKKVGLDSFRFSIS--WTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIV 100 (430)
Q Consensus 23 ~l~~~lG~~~~R~si~--W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 100 (430)
+.+++.|++++-++.- -..-.|.-. |.............|.+|+++|++++|.+--+.-.. + -.+...+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~--g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~-~------~~~~~~~ 89 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG--GSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTP-L------ATSCTSA 89 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC--CCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCc-c------ccCcccH
Confidence 5678899999887742 222222210 111100123456789999999999999874333211 0 0133567
Q ss_pred HHHHHHHHHHHHHhC
Q 040158 101 KDFVDYGDFCFKTYG 115 (430)
Q Consensus 101 ~~f~~ya~~~~~~~g 115 (430)
+.|++....+.+.|+
T Consensus 90 ~~~~~a~~~~i~~y~ 104 (294)
T cd06543 90 DQLAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888887
No 76
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=51.25 E-value=42 Score=31.88 Aligned_cols=83 Identities=10% Similarity=-0.009 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChh
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPK 98 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 98 (430)
+++++++++.|++.+|++++-+...-.-.. +.=.+..++-..+.++.+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNL-NKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 889999999999999999987632111100 11112346778899999999999999998543332 12
Q ss_pred hHHHHHHHHHHHHHHhC
Q 040158 99 IVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 99 ~~~~f~~ya~~~~~~~g 115 (430)
..+.+.++++.+. .+|
T Consensus 144 ~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 144 DPEYVLEVAKALE-EAG 159 (265)
T ss_pred CHHHHHHHHHHHH-HcC
Confidence 3455666666654 344
No 77
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=50.80 E-value=51 Score=34.54 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=64.1
Q ss_pred hHHHHHHHHHcCCCEEEecc-cCC-ccccCCCCCCCCChhHHHHHHHHHHHHHhCC-CeEEEEcCCCCCchhhHHhhCCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYNDLINELLAND-IKPFVTLLHFDPPQALEEEYGGF 94 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~ggw 94 (430)
-+|.+++|+++|+|-+.+++ |-+ .+...- |... ..+-..+.|+.+++.| +.+.++|. +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg--------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG--------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------
Confidence 46889999999999888887 443 222211 2221 1244667889999999 66666664 56662
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCCC
Q 040158 95 LSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFA 141 (430)
Q Consensus 95 ~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~~ 141 (430)
+ +.+.|.+=.+.+.+-=-++|..+...-||.+.....+..|..+
T Consensus 227 q---T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 Q---TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred C---CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 1 2334444444444332367888888889987544434445554
No 78
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=50.66 E-value=2.9e+02 Score=28.81 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=44.6
Q ss_pred HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHH----HHHhCCCeEE-EEcCCCCCchhhHHhhCCCCC
Q 040158 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLIN----ELLANDIKPF-VTLLHFDPPQALEEEYGGFLS 96 (430)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~----~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~ 96 (430)
++.|.+||+..|=|- =..|.|.+. ... +-.+-.+++++ .+.+.||+.. +|..-|..|... .|+++|
T Consensus 84 Fef~~kLg~~~~~FH--D~D~~peg~---~~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~---~GA~Tn 154 (434)
T TIGR02630 84 FEFFEKLGVPYYCFH--DRDIAPEGA---SLR-ETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYM---HGAATS 154 (434)
T ss_pred HHHHHHhCCCeeccC--ccccCCCCC---CHH-HHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCcccc---CCcCCC
Confidence 567999999987664 456778762 222 22233344444 4457799865 467778899764 399999
Q ss_pred hh
Q 040158 97 PK 98 (430)
Q Consensus 97 ~~ 98 (430)
++
T Consensus 155 Pd 156 (434)
T TIGR02630 155 PD 156 (434)
T ss_pred CC
Confidence 86
No 79
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=50.60 E-value=1e+02 Score=31.02 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=67.3
Q ss_pred hHHHHHHHHHcCCCE--EEecccCCccccCCCCCCCCChhHHHHH--HHHHHHHHhCCCeEEEEcCCCCCch-------h
Q 040158 18 YKEDIKLMKKVGLDS--FRFSISWTRILPKGKISGGVNPLGVKFY--NDLINELLANDIKPFVTLLHFDPPQ-------A 86 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~--~R~si~W~ri~p~~~~~g~~n~~~~~~y--~~~i~~l~~~gi~p~vtL~H~~~P~-------~ 86 (430)
..+-++.+++.|+.. +=+.+.|..- .+. -.+|.+.+.-- .++|++|+++|++.++.+.-+-.+. -
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~--~~~--f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~ 101 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDR--RRD--FTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPP 101 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccC--ccc--eecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHH
Confidence 455678888888764 4455566432 121 23444444434 7999999999999998876443221 0
Q ss_pred hHH---h-----------h-----------CCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCc
Q 040158 87 LEE---E-----------Y-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (430)
Q Consensus 87 l~~---~-----------~-----------ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 129 (430)
+.+ + + -.++|++..+.|....+.+...+|- --+|+=+|||..
T Consensus 102 ~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 102 YDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 111 0 0 1378888888888777766665542 357888999974
No 80
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=50.55 E-value=1.2e+02 Score=29.90 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=68.0
Q ss_pred chHHHHHHHHHcCC--CEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC---CCchhhHH--
Q 040158 17 HYKEDIKLMKKVGL--DSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF---DPPQALEE-- 89 (430)
Q Consensus 17 ~~~eDi~l~~~lG~--~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~-- 89 (430)
...+-++.+++.|+ +++=+.+.|.+-.-.+. -.+|++.+---..+|++|.++|+++++.+.-+ +.|. +.+
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~--f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~-~~e~~ 101 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCD--FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPL-FKEAA 101 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCccee--eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchh-HHHHH
Confidence 35667899999994 55667778874322111 35566666667899999999999988876533 2222 111
Q ss_pred -h-----------h--------C---CCCChhhHHHHHHHHHHHHHHhCCCce-eEEeccCCC
Q 040158 90 -E-----------Y--------G---GFLSPKIVKDFVDYGDFCFKTYGDRVK-LWASMNEPN 128 (430)
Q Consensus 90 -~-----------~--------g---gw~~~~~~~~f~~ya~~~~~~~gd~v~-~w~t~NEp~ 128 (430)
+ + + .+.|++..+.|.+..+.+.+ .| |. +|+=+|||.
T Consensus 102 ~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 102 EKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred HCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 0 0 16788888888877776544 44 43 455688873
No 81
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=50.00 E-value=86 Score=31.48 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=69.1
Q ss_pred hHHHHHHHHHcCCCEEEe--cccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC-----chhhH--
Q 040158 18 YKEDIKLMKKVGLDSFRF--SISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP-----PQALE-- 88 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~--si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~-- 88 (430)
..+-++.+++.||..==+ .+.|.. +...-.+|++-+.--..+|++|+++|++.++.++-+-. |..-.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~ 101 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTD----GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAK 101 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhC----CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHH
Confidence 456678888888765444 444432 11012345444444568999999999999888764422 22110
Q ss_pred Hh----------------------hCCCCChhhHHHHHHHHHHHHHHhC-CCceeEEeccCCCccc
Q 040158 89 EE----------------------YGGFLSPKIVKDFVDYGDFCFKTYG-DRVKLWASMNEPNGMV 131 (430)
Q Consensus 89 ~~----------------------~ggw~~~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~~~ 131 (430)
++ +-.+.|++..+.|.+..+.+....+ +-+-.|+=+|||.++.
T Consensus 102 ~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 102 DKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 10 0137889999999988887765433 2357889999998754
No 82
>PRK05474 xylose isomerase; Provisional
Probab=49.09 E-value=3e+02 Score=28.76 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHH----HHhCCCeEE-EEcCCCCCchhhHHhhCCCC
Q 040158 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINE----LLANDIKPF-VTLLHFDPPQALEEEYGGFL 95 (430)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~----l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~ 95 (430)
=++.|.+||+..|=|- =..|.|.+ ... .+..+-.+++++. +.+-||+.. +|..-|..|... .|+++
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg---~s~-~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~---~GA~T 154 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEG---ASL-KEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYM---AGAAT 154 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCC---CCH-HHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCcccc---CCcCC
Confidence 3577999999988664 34677876 222 2333334555444 446788865 567778889764 39999
Q ss_pred Chh
Q 040158 96 SPK 98 (430)
Q Consensus 96 ~~~ 98 (430)
|++
T Consensus 155 npd 157 (437)
T PRK05474 155 NPD 157 (437)
T ss_pred CCC
Confidence 976
No 83
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=48.49 E-value=29 Score=33.65 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
.+|++++.+.|++.+|+.++=|...-.... +.=-++.++...+++..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASH-GKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 679999999999999999865544332210 222356789999999999999999999874
No 84
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=48.10 E-value=26 Score=33.74 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=56.8
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCCh
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSP 97 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 97 (430)
-.+|++.+.+.|++.+|++++.|.+.-.... +.--++.++-..++++.++++|+++.+++ | + .+..+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~----~--~~~~~- 137 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGA-----E----D--ASRAD- 137 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEee-----c----c--CCCCC-
Confidence 3789999999999999999988766432110 22235678889999999999999887665 2 1 23233
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 040158 98 KIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 98 ~~~~~f~~ya~~~~~~~g 115 (430)
.+...+.++.+.+ .|
T Consensus 138 --~~~~~~~~~~~~~-~G 152 (259)
T cd07939 138 --PDFLIEFAEVAQE-AG 152 (259)
T ss_pred --HHHHHHHHHHHHH-CC
Confidence 4566666666543 44
No 85
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=48.05 E-value=81 Score=32.47 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=39.8
Q ss_pred hchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
..|++||++++++||+.|=+.|- .. ..... +....++++..+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 35899999999999999999886 11 22333 446688899999998888775
No 86
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=47.91 E-value=57 Score=33.11 Aligned_cols=85 Identities=9% Similarity=-0.007 Sum_probs=62.5
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC-CCCchhhHHhhCCCCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLH-FDPPQALEEEYGGFLS 96 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~ 96 (430)
-.+|++++.+.|++.+.+.++=|...-.... +.--++.++.+.++|+.++++|++..+++.. |..|. .|-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~ 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC
Confidence 5899999999999999999876665543211 3334678899999999999999999877753 55552 33333
Q ss_pred hhhHHHHHHHHHHHHH
Q 040158 97 PKIVKDFVDYGDFCFK 112 (430)
Q Consensus 97 ~~~~~~f~~ya~~~~~ 112 (430)
++.+.++++.+.+
T Consensus 196 ---~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 ---PSKVAYVAKELYD 208 (347)
T ss_pred ---HHHHHHHHHHHHH
Confidence 6677777777654
No 87
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=47.42 E-value=32 Score=37.16 Aligned_cols=63 Identities=14% Similarity=0.384 Sum_probs=42.3
Q ss_pred chhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCC--------h--hHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVN--------P--LGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n--------~--~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
.-+.-..+.++-|++||++++=++=-+.. |... ..++ + -..+-++++|+++.++||++|+++-
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~--~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVD--NGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCC--CCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555678899999999999987643311 1100 1111 1 1234588999999999999999863
No 88
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=47.34 E-value=1.3e+02 Score=29.95 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=68.1
Q ss_pred hHHHHHHHHHcCCC--EEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC-----chhhH--
Q 040158 18 YKEDIKLMKKVGLD--SFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP-----PQALE-- 88 (430)
Q Consensus 18 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~-- 88 (430)
..+-++.+++.++. ++=+.+.|.. ..+. -.+|.+-..-..++|+.|.++|++.++.+.-+-. |....
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~--f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~ 101 (317)
T cd06600 26 VVEVVDIMQKEGFPYDVVFLDIHYMD--SYRL--FTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGM 101 (317)
T ss_pred HHHHHHHHHHcCCCcceEEEChhhhC--CCCc--eeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHH
Confidence 34556777777775 4555556643 1221 3456655555678999999999998877653211 22111
Q ss_pred Hh----------------------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcc
Q 040158 89 EE----------------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (430)
Q Consensus 89 ~~----------------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 130 (430)
++ +-.|+||+..+.|.+..+.+....|- .-+|+=+|||..+
T Consensus 102 ~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 102 DKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred HCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 00 01378899999998888776655543 3578899999743
No 89
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.29 E-value=1.5e+02 Score=29.54 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=67.8
Q ss_pred hHHHHHHHHHcCCC--EEEecccCCccccCC--CCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC---CCchh--hH
Q 040158 18 YKEDIKLMKKVGLD--SFRFSISWTRILPKG--KISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF---DPPQA--LE 88 (430)
Q Consensus 18 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~--~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~--l~ 88 (430)
..+-++-+++.|+. ++=+.+.|....... .-+-.+|.+-+.--.++|++|+++|++.++.++-+ +.|.. +.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 44556778888865 566666785433211 00023455555556799999999999999987643 33331 11
Q ss_pred Hh-h-------------------C---CCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcc
Q 040158 89 EE-Y-------------------G---GFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (430)
Q Consensus 89 ~~-~-------------------g---gw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 130 (430)
++ + + .++|++..+.|.+..+.+ ...|= --+|+=+|||..+
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gv-dg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGV-TGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCc-cEEEecCCCcccc
Confidence 10 0 0 267899988888877665 33331 2468899999754
No 90
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.01 E-value=1.2e+02 Score=29.71 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=63.8
Q ss_pred cCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCC------Cc
Q 040158 11 ASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFD------PP 84 (430)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~------~P 84 (430)
+.-.+..+++=|+..+++|+..+=+.--|+.-.+.... .......-....++++-.+++|+.+++-.+|-+ +=
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~-d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~ 105 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDF-DFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLE 105 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT---TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccc-cccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHH
Confidence 34467889999999999999999999999873322110 000111113367999999999999999988766 31
Q ss_pred hhhHHh---h---C------CC---CChhhHHHHHHHHHHHHHH
Q 040158 85 QALEEE---Y---G------GF---LSPKIVKDFVDYGDFCFKT 113 (430)
Q Consensus 85 ~~l~~~---~---g------gw---~~~~~~~~f~~ya~~~~~~ 113 (430)
..+.+. | | || .+.+.+..+.+-++.++++
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 112221 1 1 23 4456888888888887754
No 91
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=46.79 E-value=36 Score=35.95 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=42.5
Q ss_pred hhhchHHH-----HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 14 FYHHYKED-----IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 14 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
.|..|.+| ++++++.|++.+|..-.... ++--...|+..++.|....+++.+-+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd---------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALND---------------PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCCC---------------HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 47778889 99999999999998753321 3335577888888888888888775555
No 92
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=46.44 E-value=68 Score=33.93 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=40.6
Q ss_pred hhhchHHH-----HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 14 FYHHYKED-----IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 14 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
.|..|.+| ++.+++.|++.+|+.++-+.+ +-....|+..++.|+....++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 36667888 899999999999999866542 224566777888888777776543334
No 93
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=46.38 E-value=44 Score=37.51 Aligned_cols=94 Identities=10% Similarity=0.208 Sum_probs=57.5
Q ss_pred hhhchHH-HHHHHHHcCCCEEEecccCC---------------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEE
Q 040158 14 FYHHYKE-DIKLMKKVGLDSFRFSISWT---------------RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVT 77 (430)
Q Consensus 14 ~y~~~~e-Di~l~~~lG~~~~R~si~W~---------------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 77 (430)
.|.-..+ -+.-+|+||++++=+.=-.. .+.|.- |. .+=++++|++|.++||.+|+.
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~---Gt-----p~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS---GT-----PEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 4554433 48999999999998763221 111111 22 234889999999999999998
Q ss_pred cC--CCCC-------------chhhHHhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 040158 78 LL--HFDP-------------PQALEEEYGG----F-------LSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 78 L~--H~~~-------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 115 (430)
+- |+.- +.++...-.| | .++++.+.+.+-++.-++.|+
T Consensus 320 vV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 320 VVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred eccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 65 3321 1222210011 2 245677777777777788775
No 94
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.77 E-value=1.3e+02 Score=29.77 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=71.7
Q ss_pred hHHHHHHHHHcCCC--EEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC---chhhH----
Q 040158 18 YKEDIKLMKKVGLD--SFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP---PQALE---- 88 (430)
Q Consensus 18 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~---- 88 (430)
..+-++.+++.|+. .+=+.+.|..-. +. -.+|.+-+.--..++++|.++|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~--f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~ 107 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GD--FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEK 107 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--Cc--cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhC
Confidence 44557889999964 677777785432 21 3556655666789999999999999987653211 11100
Q ss_pred -----HhhC----------------CCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCC
Q 040158 89 -----EEYG----------------GFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (430)
Q Consensus 89 -----~~~g----------------gw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 128 (430)
+.-| .++|++..+.|.+..+.+....|= --+|+=+|||.
T Consensus 108 g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 108 GYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred CeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 168899999999988888877763 35677899997
No 95
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=45.66 E-value=58 Score=31.66 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCEEEecccCC-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEE
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWT-RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVT 77 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 77 (430)
-+|.++.||++|++.+-++++-+ .+.+.-. +.. .++.+.+.++.++++||...++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~--~~~---s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII--STH---TYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc--CCC---CHHHHHHHHHHHHHcCCEEEEe
Confidence 38899999999999999999822 1333311 222 3466788999999999986544
No 96
>PRK14705 glycogen branching enzyme; Provisional
Probab=43.96 E-value=1.4e+02 Score=35.48 Aligned_cols=97 Identities=12% Similarity=0.207 Sum_probs=56.8
Q ss_pred hHHH-HHHHHHcCCCEEEec-c-------cCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC--CCCCchh
Q 040158 18 YKED-IKLMKKVGLDSFRFS-I-------SWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL--HFDPPQA 86 (430)
Q Consensus 18 ~~eD-i~l~~~lG~~~~R~s-i-------~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~~P~~ 86 (430)
..+. |+-+|+||++++=+. | +|- -.|.+...=....-..+=++.+|++|.++||.+|+++- |+..=.|
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 3344 689999999998765 2 241 11111000000001134488999999999999999853 5521111
Q ss_pred hHHhh----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 040158 87 LEEEY----------------GG-------FLSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 87 l~~~~----------------gg-------w~~~~~~~~f~~ya~~~~~~~g 115 (430)
....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11111 11 3456788888888888888886
No 97
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.90 E-value=91 Score=31.56 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=43.6
Q ss_pred HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
++.++++|.+++-+-+-|. |+.. ...|.+-+++..++.++|.+.||.-++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~--~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDED--DAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcc--hHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 6779999999999999987 4421 33578889999999999999999988854
No 98
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=43.87 E-value=1.6e+02 Score=32.32 Aligned_cols=95 Identities=14% Similarity=0.262 Sum_probs=58.9
Q ss_pred hhchHHHH-HHHHHcCCCEEEec-ccCCcc------c------cCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-
Q 040158 15 YHHYKEDI-KLMKKVGLDSFRFS-ISWTRI------L------PKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL- 79 (430)
Q Consensus 15 y~~~~eDi-~l~~~lG~~~~R~s-i~W~ri------~------p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 79 (430)
|.-..+-+ +-+|+||++++=++ |..+.- . |++.. |. .+=+.++|++|.++||++|+.+-
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-----~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-----PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 33345564 88999999999884 433210 0 11100 22 23488999999999999999854
Q ss_pred -CCCC-----------chhhHH-----hhCCC-------CChhhHHHHHHHHHHHHHHhC
Q 040158 80 -HFDP-----------PQALEE-----EYGGF-------LSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 80 -H~~~-----------P~~l~~-----~~ggw-------~~~~~~~~f~~ya~~~~~~~g 115 (430)
|... |.+... .+..| .++++.+.+.+-++..++.|+
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 5431 111110 00112 457888899998899898886
No 99
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=43.53 E-value=76 Score=34.65 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=21.5
Q ss_pred hhchHHH-----HHHHHHcCCCEEEecccCCc
Q 040158 15 YHHYKED-----IKLMKKVGLDSFRFSISWTR 41 (430)
Q Consensus 15 y~~~~eD-----i~l~~~lG~~~~R~si~W~r 41 (430)
|.+|.+| +++.++.|++.+|++.+.+.
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd 122 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMND 122 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc
Confidence 5666665 99999999999999975543
No 100
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.32 E-value=1.2e+02 Score=30.59 Aligned_cols=59 Identities=25% Similarity=0.447 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
+++.+|++|-++..|=+-|. |++. -.+|..-.+|.+++.++|.++||-=++-+..+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~--~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGD--EEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 57899999999999999886 5542 56888889999999999999999999988766544
No 101
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=43.25 E-value=36 Score=36.56 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=40.1
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCCccccCCCCC-C-------CCChh--HHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKIS-G-------GVNPL--GVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~-g-------~~n~~--~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
..-..+-++-+++|||+++=++=- ++.+..+ | .+|++ ..+=++++|+++.++||++|+++-
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi----~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPF----FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCC----cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 444566789999999999877632 1211000 1 12221 235588999999999999999753
No 102
>PRK09505 malS alpha-amylase; Reviewed
Probab=43.15 E-value=51 Score=36.61 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=41.5
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccc-----------c----CCCC--C-CCCCh--hHHHHHHHHHHHHHhCCCeEEEE
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRIL-----------P----KGKI--S-GGVNP--LGVKFYNDLINELLANDIKPFVT 77 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------p----~~~~--~-g~~n~--~~~~~y~~~i~~l~~~gi~p~vt 77 (430)
..+=++-|++||++++=++=-...+. | -+.- + -.+|+ -..+=++.+|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668899999999998874333321 1 0000 0 01121 13455899999999999999997
Q ss_pred c--CCCC
Q 040158 78 L--LHFD 82 (430)
Q Consensus 78 L--~H~~ 82 (430)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 4 3543
No 103
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=43.03 E-value=80 Score=29.83 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=43.0
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEE-cCCCCCc
Q 040158 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVT-LLHFDPP 84 (430)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 84 (430)
+-..+++=|+++++||.+.+++...+. |......+.....++..+++.+.+.+.||...+= +.+++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345667788999999999998644321 2110001122344566788888888999998874 3445544
No 104
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=42.68 E-value=1.1e+02 Score=34.37 Aligned_cols=105 Identities=20% Similarity=0.328 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCC--EEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC---CCCCc----------
Q 040158 20 EDIKLMKKVGLD--SFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL---HFDPP---------- 84 (430)
Q Consensus 20 eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P---------- 84 (430)
+=++.+.++|+. ..=..|.|-.-..+ -.+|..+.-...++++.|.++|++-++.+. +-+..
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykD----FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~ 390 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKD----FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAK 390 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccc----eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhh
Confidence 346778888887 55555666433222 457777777788999999999999999986 32322
Q ss_pred -----------hhhHHhhCC------CCChhhHHHHHHHHHHHHHHhCCCce---eEEeccCCCcccc
Q 040158 85 -----------QALEEEYGG------FLSPKIVKDFVDYGDFCFKTYGDRVK---LWASMNEPNGMVM 132 (430)
Q Consensus 85 -----------~~l~~~~gg------w~~~~~~~~f~~ya~~~~~~~gd~v~---~w~t~NEp~~~~~ 132 (430)
..+.+-..| ++|+++++++ ...+++|.+.|. +|+-+|||..++.
T Consensus 391 ~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 391 DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred ceeeecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 001110112 6677665544 445668888775 8999999987654
No 105
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.54 E-value=1.2e+02 Score=30.46 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=49.1
Q ss_pred HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
++.+|++|-++..|=+-|. |+.. ..+|..-.+|.+++.++|.+++|--++-+..+|.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~--~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEP--DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999999886 5542 56888899999999999999999998887765544
No 106
>PRK14706 glycogen branching enzyme; Provisional
Probab=42.50 E-value=98 Score=34.15 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=51.8
Q ss_pred HHHHHcCCCEEEecc--cCCccccCCCC-CC--CCC--hhHHHHHHHHHHHHHhCCCeEEEEcC--CCC-----------
Q 040158 23 KLMKKVGLDSFRFSI--SWTRILPKGKI-SG--GVN--PLGVKFYNDLINELLANDIKPFVTLL--HFD----------- 82 (430)
Q Consensus 23 ~l~~~lG~~~~R~si--~W~ri~p~~~~-~g--~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~----------- 82 (430)
+-+|+||++++-+.= +-+----.|.. .+ .++ ....+=++.+|++|.++||.+|+.+- |+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg 254 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDG 254 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCC
Confidence 668999999987652 11000000100 00 000 01134488999999999999999743 532
Q ss_pred Cchh-hHHhhC----CC-------CChhhHHHHHHHHHHHHHHhC
Q 040158 83 PPQA-LEEEYG----GF-------LSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 83 ~P~~-l~~~~g----gw-------~~~~~~~~f~~ya~~~~~~~g 115 (430)
.|.+ ..+... .| .++++.+.+.+=++.-++.|+
T Consensus 255 ~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 255 GPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 000001 12 256788888888888888886
No 107
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.45 E-value=2.5e+02 Score=27.85 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=65.6
Q ss_pred hHHHHHHHHHcCCCEE--EecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC---chh--hHHh
Q 040158 18 YKEDIKLMKKVGLDSF--RFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP---PQA--LEEE 90 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~--R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~--l~~~ 90 (430)
..+-++.+++.|+..= =+.+.|....-.....-.+|.+.+.--.++|++|+++|++.++.++-+-. |.. +.++
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 4555778888888644 44445654311000002345444444679999999999999987664322 211 0010
Q ss_pred ------------h-----------CCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCc
Q 040158 91 ------------Y-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (430)
Q Consensus 91 ------------~-----------ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 129 (430)
+ -.++|++..+.|.+..+..+...|- .-+|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 0157888888888777555555542 357888999974
No 108
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=40.58 E-value=13 Score=35.86 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCC
Q 040158 62 DLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSF 140 (430)
Q Consensus 62 ~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~ 140 (430)
+..--+.++.+.|+++||||+.=. .-+.+....+.++.+.+-|+.--.++..+-.-|---....+.+..||..-.+
T Consensus 72 d~~G~~~a~~~~pl~SlHH~~~~~---PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy 147 (255)
T PF04646_consen 72 DPSGFLEAHPLAPLVSLHHWDSVD---PIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVY 147 (255)
T ss_pred CcceeeecCCCCceeeeeehhhcc---ccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEE
Confidence 444445566799999999999622 2246666667778887755554444432222222222233456688887666
No 109
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=40.21 E-value=82 Score=32.05 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=56.7
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCCh
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSP 97 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 97 (430)
-.+||+.+.+.|++.+|+.++-|.+.-.... +.--++.++-..+.|+.++++|+++.+++. + .+..+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e---------d--~~r~~- 140 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGGE---------D--ASRAD- 140 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEeec---------C--CCCCC-
Confidence 3889999999999999999987754332110 222356788899999999999999876642 1 33333
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 040158 98 KIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 98 ~~~~~f~~ya~~~~~~~g 115 (430)
.+.++++++.+.+ .|
T Consensus 141 --~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 --PDFLVELAEVAAE-AG 155 (365)
T ss_pred --HHHHHHHHHHHHH-cC
Confidence 5566666666544 44
No 110
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=40.17 E-value=33 Score=34.72 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCCe-----EEEeecCCCCC-CCC---C-ccc-ccCchhHHHHHHHHHHHHHHHHHcC-CC---eeE
Q 040158 318 GLQELLLYLKKKYNNPT-----IYITENGLADD-ASL---P-LKV-ALKDSMRIRYLHSHLEYLLKAIKEG-VN---VKA 382 (430)
Q Consensus 318 gl~~~L~~~~~~Y~~p~-----I~ITENG~~~~-~~~---~-~~~-~~~D~~Ri~yl~~hl~~~~~Ai~dG-v~---v~G 382 (430)
--..+|.++-++|+-|+ |+=+|.|++.. .+. + +.. .-.|..|..|.++.|.+.++-+++| ++ ++|
T Consensus 111 ~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~G 190 (343)
T COG2951 111 QYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALKG 190 (343)
T ss_pred HHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCcccccc
Confidence 34568999999999764 45579988872 111 0 001 1248999999999998888888766 77 666
Q ss_pred EEeeeccccccccCCCC------CceeeEEEcCCCCcccccchh
Q 040158 383 YYIWTFWDDFEWDAGYT------VRFGITYVDFKNHLRRYLKYS 420 (430)
Q Consensus 383 Y~~WSl~Dn~EW~~Gy~------~rfGL~~VD~~~~~~R~pK~S 420 (430)
+|+..+. .-|=.|.||++.+.+|-+..|
T Consensus 191 ----------SwAGAmGq~QFmPss~~~YaVD~DGDG~~Diw~s 224 (343)
T COG2951 191 ----------SWAGAMGQTQFMPSSYLKYAVDGDGDGHRDIWNS 224 (343)
T ss_pred ----------hhhhccCCcccCcHHHHHhhhcCCCCCccCCccC
Confidence 6754433 266778899976778877743
No 111
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=39.92 E-value=74 Score=32.18 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=53.5
Q ss_pred hHHHHHHHHHcCCCEEEecc-cCC-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEE-EEcCCCCCchhhHHhhCCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYNDLINELLANDIKPF-VTLLHFDPPQALEEEYGGF 94 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw 94 (430)
-++.++.|+++|++.+-+++ +-+ .+...- |.. ...+-+.+.|+.+++.|+.++ ++| =+++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~--~~~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg--------- 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQ--HSAKNIAPAIETALKSGIENISLDL-MYGLPL--------- 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCC--CCHHHHHHHHHHHHHcCCCeEEEec-cCCCCC---------
Confidence 46889999999999777776 332 333321 221 124557789999999999755 443 355663
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CCceeEEeccCCC
Q 040158 95 LSPKIVKDFVDYGDFCFKTYG-DRVKLWASMNEPN 128 (430)
Q Consensus 95 ~~~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~ 128 (430)
++ .+.+.+-.+.+.+ ++ +.+..+...=||.
T Consensus 164 qt---~~~~~~~l~~~~~-l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 QT---LNSLKEELKLAKE-LPINHLSAYALSVEPN 194 (360)
T ss_pred CC---HHHHHHHHHHHHc-cCCCEEEeecceEcCC
Confidence 12 3444444444443 33 3455444444554
No 112
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=39.58 E-value=61 Score=36.94 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=42.1
Q ss_pred hhchHHHHHHHHHcCCCEEEecc---------------cCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSI---------------SWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si---------------~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
+....+-+.-+++||++++=+|= ++.+|.|.- | +.+=++++++++.++||.+|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 45577889999999999986663 333444442 2 23458899999999999999975
No 113
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=39.26 E-value=1e+02 Score=30.07 Aligned_cols=85 Identities=9% Similarity=0.065 Sum_probs=60.8
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC-CCCchhhHHhhCCCCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLH-FDPPQALEEEYGGFLS 96 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~ 96 (430)
-.+|++.+.+.|++.+++.++=|...-.... +.--++.++...+.+..++++|+++.+++.. |+.|. +|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC-
Confidence 4789999999999999999876654322110 2223567888999999999999999988763 55552 3333
Q ss_pred hhhHHHHHHHHHHHHH
Q 040158 97 PKIVKDFVDYGDFCFK 112 (430)
Q Consensus 97 ~~~~~~f~~ya~~~~~ 112 (430)
..+.+.++++.+.+
T Consensus 147 --~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 --PPERVAEVAERLLD 160 (274)
T ss_pred --CHHHHHHHHHHHHH
Confidence 36677777777654
No 114
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=39.23 E-value=1.7e+02 Score=28.41 Aligned_cols=68 Identities=12% Similarity=0.018 Sum_probs=48.0
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCCh
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSP 97 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 97 (430)
-++|+++..+.|++.+|+++..+. ++--.+.++.++++|+++.+++.--+ ++ +
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~~---~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAICYTG---------SP---V 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEEEecC---------CC---C
Confidence 578999999999999999875543 34466889999999999887663101 12 2
Q ss_pred hhHHHHHHHHHHHHH
Q 040158 98 KIVKDFVDYGDFCFK 112 (430)
Q Consensus 98 ~~~~~f~~ya~~~~~ 112 (430)
-..+.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (275)
T cd07937 146 HTLEYYVKLAKELED 160 (275)
T ss_pred CCHHHHHHHHHHHHH
Confidence 235667777777654
No 115
>PTZ00445 p36-lilke protein; Provisional
Probab=39.20 E-value=55 Score=30.89 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHh-hCCCCChh---------hHHHHHHHHHHHH
Q 040158 58 KFYNDLINELLANDIKPFVTLLHFDPPQALEEE-YGGFLSPK---------IVKDFVDYGDFCF 111 (430)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~-~ggw~~~~---------~~~~f~~ya~~~~ 111 (430)
+--+.+++.|.+.||+.+++= ||. -|... -|||.++. ....|....+.+.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~Dn--TlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDL--TMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chh--hhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 446788999999999999863 233 22221 28999987 4455666555543
No 116
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=39.04 E-value=1.2e+02 Score=29.91 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=60.3
Q ss_pred hhhchHHH-HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC----chhhH
Q 040158 14 FYHHYKED-IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP----PQALE 88 (430)
Q Consensus 14 ~y~~~~eD-i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~ 88 (430)
||--|.++ .+.+++.+=+-=-++..|-.|-|++...+.. ..++++.+.++|++.++++..++- +.-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~ 79 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAH 79 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH
Confidence 34444443 6677777777777888899998876322222 358899999999999999976641 11111
Q ss_pred HhhCCCCChhhHHHHHHHHHHHHHHhC
Q 040158 89 EEYGGFLSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 89 ~~~ggw~~~~~~~~f~~ya~~~~~~~g 115 (430)
. --.+++..+.|++=.-.+++++|
T Consensus 80 ~---~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 80 A---VLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred H---HhcCHHHHHHHHHHHHHHHHHhC
Confidence 1 12356667778777777777775
No 117
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.55 E-value=1.3e+02 Score=29.59 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=50.2
Q ss_pred CccCchhhc---hHHHHHHHHHcCCCEEEecc----cCCccccCCC-CCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC
Q 040158 9 DIASGFYHH---YKEDIKLMKKVGLDSFRFSI----SWTRILPKGK-ISGGVNPLGVKFYNDLINELLANDIKPFVTLLH 80 (430)
Q Consensus 9 ~~a~d~y~~---~~eDi~l~~~lG~~~~R~si----~W~ri~p~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 80 (430)
|+|-+++-. .++=|++|+.+|+|.+-+=+ .+.. .|.-. .+|.+.++. ++++++.++++||+++..+
T Consensus 7 D~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei-- 80 (301)
T cd06565 7 DLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI-- 80 (301)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC--
Confidence 455544443 67889999999999887744 3322 12211 026677655 6799999999999999876
Q ss_pred CCCchhhH
Q 040158 81 FDPPQALE 88 (430)
Q Consensus 81 ~~~P~~l~ 88 (430)
|+|..+.
T Consensus 81 -d~pGH~~ 87 (301)
T cd06565 81 -QTLGHLE 87 (301)
T ss_pred -CCHHHHH
Confidence 6777653
No 118
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=38.27 E-value=2.5e+02 Score=28.39 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=61.2
Q ss_pred CCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhh
Q 040158 8 GDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQAL 87 (430)
Q Consensus 8 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 87 (430)
+-+|.=||+ |+ =.....+.|+..+|+. | |.+-.+ +....+++.++++||..=+...|=.|..-+
T Consensus 76 PLVaDiHf~-~r-la~~~~~~g~~k~RIN-------P-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~ 139 (361)
T COG0821 76 PLVADIHFD-YR-LALEAAECGVDKVRIN-------P-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRL 139 (361)
T ss_pred CEEEEeecc-HH-HHHHhhhcCcceEEEC-------C-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHH
Confidence 445555666 33 2334457788888864 4 333221 368899999999999999999999999999
Q ss_pred HHhhCCCCChhhHHHHHHHHHHH
Q 040158 88 EEEYGGFLSPKIVKDFVDYGDFC 110 (430)
Q Consensus 88 ~~~~ggw~~~~~~~~f~~ya~~~ 110 (430)
.++|++-+.+..++--.++++.+
T Consensus 140 ~~ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 140 LEKYGGPTPEALVESALEHAELL 162 (361)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99998765555666555566553
No 119
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=38.25 E-value=95 Score=31.77 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
++|++.+.+.|++.+|++++-|.+.-.... +.--++.++-..+.++.+++.|+++.+++
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999987765432111 22345678889999999999999988874
No 120
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=36.99 E-value=81 Score=31.77 Aligned_cols=112 Identities=18% Similarity=0.371 Sum_probs=58.6
Q ss_pred hhchHHHHHHHHHcCCCEEEecc----cCCccccCC--------------------------CCCCCCChhH----HHHH
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSI----SWTRILPKG--------------------------KISGGVNPLG----VKFY 60 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si----~W~ri~p~~--------------------------~~~g~~n~~~----~~~y 60 (430)
|.+|++.|+.|+=-|||..=--+ -|.|++-+= .-+|++..+- .+-=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 78999999999999999543222 233333221 0013333222 3345
Q ss_pred HHHHHHHHhCCCeEEEEcCCCCCchhhHHhhC--------CC--------CChhhHHHHHHHHHH----HHHHhCCCcee
Q 040158 61 NDLINELLANDIKPFVTLLHFDPPQALEEEYG--------GF--------LSPKIVKDFVDYGDF----CFKTYGDRVKL 120 (430)
Q Consensus 61 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g--------gw--------~~~~~~~~f~~ya~~----~~~~~gd~v~~ 120 (430)
+++++.+++-||+|++--+-=-.|..|.+++. .| +.| .-..|++.++. ..+.|| ...+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 68999999999999998765456888888762 23 222 23566665554 456788 3444
Q ss_pred EE--eccCCC
Q 040158 121 WA--SMNEPN 128 (430)
Q Consensus 121 w~--t~NEp~ 128 (430)
+. +|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 44 888843
No 121
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.59 E-value=2.6e+02 Score=27.58 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=75.0
Q ss_pred ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC---chh----------hHHhhCCC-----C----Chh
Q 040158 41 RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP---PQA----------LEEEYGGF-----L----SPK 98 (430)
Q Consensus 41 ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~----------l~~~~ggw-----~----~~~ 98 (430)
+..|... |-++++-++.++++++.+.++|-..++=|.|-.- |.. .... ... . =.+
T Consensus 62 ~~~~~~~--~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~mt~~ei~~ 138 (327)
T cd02803 62 KGYPGQL--GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSP-GGGEPPREMTKEEIEQ 138 (327)
T ss_pred cCCCCCc--CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCC-CCCCCCCcCCHHHHHH
Confidence 4444432 6788999999999999999999999999998431 110 0000 000 1 135
Q ss_pred hHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCC-CCCcCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 040158 99 IVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSF-APGRCSNYVGNCTAGDSATEPYIAAHTMLLSHEALVN 177 (430)
Q Consensus 99 ~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~-~Pg~~~~~~~~~~~~~~~~~~~~a~hn~l~Aha~a~~ 177 (430)
+++.|++.|+.+.+.=-|-|. +.+-.||+...| .|..... .+- +|-+ + -|-..--...++
T Consensus 139 ~i~~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R--~d~-yGgs----~---enr~r~~~eii~ 199 (327)
T cd02803 139 IIEDFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKR--TDE-YGGS----L---ENRARFLLEIVA 199 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCC--Ccc-cCCC----H---HHHHHHHHHHHH
Confidence 788899888887653213333 344567765543 2321100 000 0111 1 122333345666
Q ss_pred HHHHhcCCCCCCcEEEEeecceee
Q 040158 178 LYKHKYQPYQKGKIGITILTHWFE 201 (430)
Q Consensus 178 ~~r~~~~~~~~~~IGi~~~~~~~~ 201 (430)
.+|+... .+..||+-++.....
T Consensus 200 avr~~~g--~d~~i~vris~~~~~ 221 (327)
T cd02803 200 AVREAVG--PDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHcC--CCceEEEEechhccC
Confidence 6676542 345788887664433
No 122
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=36.47 E-value=1.3e+02 Score=32.27 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=68.6
Q ss_pred hHHHHHHHHHcCCCEEEecc--cCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSI--SWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si--~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 95 (430)
=+|.+++|+++|++.+-+++ --.+++..-. .| .+ ++-..+.++.+++.|++..+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 46889999999999777777 2223332210 02 22 34466788899999998666654 45652
Q ss_pred ChhhHHHHHHHHHHHHH--HhC-CCceeEEeccCCCccccccccCCCCCCC
Q 040158 96 SPKIVKDFVDYGDFCFK--TYG-DRVKLWASMNEPNGMVMNGYNGGSFAPG 143 (430)
Q Consensus 96 ~~~~~~~f~~ya~~~~~--~~g-d~v~~w~t~NEp~~~~~~gy~~G~~~Pg 143 (430)
++.+.+.+=++.+++ .++ |.|+.+.+.=.|.+....-|..|.|.|-
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 223455555566665 354 6788888777777655555667777664
No 123
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=36.36 E-value=4.5e+02 Score=26.20 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=33.2
Q ss_pred CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 040158 40 TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFD 82 (430)
Q Consensus 40 ~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 82 (430)
++..|... +-++.+-+..++++.+.+.++|-..++=|+|.+
T Consensus 61 ~~~~~~~~--~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 61 GRITPGDL--GLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred cCCCCCce--eecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 34444432 567888999999999999999999999999953
No 124
>PRK10785 maltodextrin glucosidase; Provisional
Probab=36.24 E-value=69 Score=34.98 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCEEEecccC-------------CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISW-------------TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W-------------~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
..+-++-|++|||+++=++=-. -+|-|.= | ..+=++++|+++.++||++|+.+-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~---G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL---G-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4556799999999998877311 1222221 2 234488999999999999999753
No 125
>PRK12568 glycogen branching enzyme; Provisional
Probab=36.24 E-value=62 Score=36.22 Aligned_cols=95 Identities=16% Similarity=0.297 Sum_probs=57.8
Q ss_pred hhchHHH-HHHHHHcCCCEEEecc--------cCC-----ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-
Q 040158 15 YHHYKED-IKLMKKVGLDSFRFSI--------SWT-----RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL- 79 (430)
Q Consensus 15 y~~~~eD-i~l~~~lG~~~~R~si--------~W~-----ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 79 (430)
|.-..+. |+-+|+||++++=+.= +|- -.-|++.. |. .+=++.+|++|.++||.+|+.+-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444455 6889999999986652 341 01111110 32 34488999999999999999854
Q ss_pred -CCCCch---------hhHH----h---hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 040158 80 -HFDPPQ---------ALEE----E---YGG-------FLSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 80 -H~~~P~---------~l~~----~---~gg-------w~~~~~~~~f~~ya~~~~~~~g 115 (430)
|+.--. .+.+ + +.. +.++++.+.+.+=+..-++.|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 442110 0110 0 012 3456778888888888888885
No 126
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=35.93 E-value=1.4e+02 Score=31.38 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=38.9
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
.++||+.+.+.|++.+|+.++-+.+. -....|+.++++|+.+.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR---------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH---------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 35677999999999999998665441 14467888899998887777654445
No 127
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=35.90 E-value=26 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=31.4
Q ss_pred CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 040158 40 TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF 81 (430)
Q Consensus 40 ~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 81 (430)
+++.|.. +.--.++++...+++..|.++|| |++.|++-
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5677876 55567899999999999999999 88888753
No 128
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=35.79 E-value=75 Score=36.01 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=41.7
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCC---------------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWT---------------RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~---------------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
+....+-+.-+++||++++=+|=-+. +|.|.- | +.+=+++++++|.++||..|+.+
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL---G-----GEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 44567889999999999997764332 333332 2 24558899999999999999985
No 129
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=35.49 E-value=84 Score=34.98 Aligned_cols=57 Identities=21% Similarity=0.397 Sum_probs=38.6
Q ss_pred HHHHHHcCCCEEEe----cccCCccccCCCC--------------CCC--CCh---hHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 22 IKLMKKVGLDSFRF----SISWTRILPKGKI--------------SGG--VNP---LGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 22 i~l~~~lG~~~~R~----si~W~ri~p~~~~--------------~g~--~n~---~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
|+-+|+|||+++.+ ++.+-+..++... +|. .+. ..+.=++.+|++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999985 3444444321100 011 122 246669999999999999999974
No 130
>PRK03705 glycogen debranching enzyme; Provisional
Probab=35.36 E-value=91 Score=34.52 Aligned_cols=55 Identities=15% Similarity=0.332 Sum_probs=36.7
Q ss_pred HHHHHHcCCCEEEecc--c---------------C-------CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEE
Q 040158 22 IKLMKKVGLDSFRFSI--S---------------W-------TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVT 77 (430)
Q Consensus 22 i~l~~~lG~~~~R~si--~---------------W-------~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 77 (430)
|+-||+|||+++=++= + | -.+.|.= |.-....++=+++||++|.++||++|+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 8899999999987642 1 1 1122221 1111123556899999999999999998
Q ss_pred cC
Q 040158 78 LL 79 (430)
Q Consensus 78 L~ 79 (430)
+-
T Consensus 262 vV 263 (658)
T PRK03705 262 VV 263 (658)
T ss_pred Ec
Confidence 53
No 131
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.82 E-value=2.4e+02 Score=28.40 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
..+|++.+.+.|++.+|+....+.. +--.+.|..+++.|++..+.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 3689999999999999988754322 1245889999999999988774
No 132
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=34.63 E-value=1.3e+02 Score=29.78 Aligned_cols=64 Identities=19% Similarity=0.342 Sum_probs=46.1
Q ss_pred hHHHHHHHHHcCCCEEEeccc----CCc---cccCC----------CCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSIS----WTR---ILPKG----------KISGGVNPLGVKFYNDLINELLANDIKPFVTLLH 80 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~----W~r---i~p~~----------~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 80 (430)
.++-|+.|+..++|.+.+-++ |.- ..|.- ..+|.+.++- .+++++.++++||+.|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec--
Confidence 667799999999999888776 522 22321 0114566555 6799999999999999876
Q ss_pred CCCchhh
Q 040158 81 FDPPQAL 87 (430)
Q Consensus 81 ~~~P~~l 87 (430)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 788664
No 133
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=34.19 E-value=3.4e+02 Score=28.06 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCCEEEecccCCcc-----------ccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC-------
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRI-----------LPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL------- 79 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri-----------~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~------- 79 (430)
..+-++.++++|++.+=+.--|..- .|+. ..| +.| ...+++.+.+.|+++=+=+-
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccch
Confidence 3445789999999998888899643 3332 122 234 56899999999999866331
Q ss_pred ---CCCCchhhHHhhCC-------------CCChhhHHHHHHHHHHHHHHhC
Q 040158 80 ---HFDPPQALEEEYGG-------------FLSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 80 ---H~~~P~~l~~~~gg-------------w~~~~~~~~f~~ya~~~~~~~g 115 (430)
--..|.|+... ++ ..++++.++..+-...+++.+|
T Consensus 133 S~l~~~hPdw~l~~-~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 133 SDLYREHPDWVLRD-PGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SCHCCSSBGGBTCC-TTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhCccceeec-CCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 12458886431 11 4577888888888877788887
No 134
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=34.04 E-value=1.6e+02 Score=29.90 Aligned_cols=97 Identities=14% Similarity=0.252 Sum_probs=56.6
Q ss_pred chHHHHHHHHHcCCCEEEecc-cC-CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEE-EEcCCCCCchhhHHhhCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSI-SW-TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPF-VTLLHFDPPQALEEEYGG 93 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg 93 (430)
.-+|.+++|+++|++.+-+++ += .++...-. ...+ .+-..+.|+.+++.|+..+ +.+ =+++|.
T Consensus 98 l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~--r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg-------- 163 (377)
T PRK08599 98 LTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG--RTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG-------- 163 (377)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC--CCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC--------
Confidence 347889999999999777777 22 23443321 2223 3557789999999999744 333 245663
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CCceeEEeccCCCcccc
Q 040158 94 FLSPKIVKDFVDYGDFCFKTYG-DRVKLWASMNEPNGMVM 132 (430)
Q Consensus 94 w~~~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~~~~ 132 (430)
++ .+.|.+=.+.+.+ ++ +.|..+...-+|.+...
T Consensus 164 -qt---~~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 164 -QT---IEDFKESLAKALA-LDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred -CC---HHHHHHHHHHHHc-cCCCEEeeeceeecCCChhH
Confidence 23 3344444444433 33 34555555567765433
No 135
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=33.21 E-value=1.8e+02 Score=29.94 Aligned_cols=106 Identities=12% Similarity=0.176 Sum_probs=62.3
Q ss_pred chHHHHHHHHHcCCCEEEecc-cC-CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-EEEEcCCCCCchhhHHhhCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSI-SW-TRILPKGKISGGVNPLGVKFYNDLINELLANDIK-PFVTLLHFDPPQALEEEYGG 93 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg 93 (430)
.-++.++.|+++|+|.+-+++ +- .+++..-. -..+ .+-..+.++.+++.|+. .-++|. +++|.
T Consensus 113 lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~--R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg-------- 178 (400)
T PRK07379 113 FDLEQLQGYRSLGVNRVSLGVQAFQDELLALCG--RSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH-------- 178 (400)
T ss_pred CCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhC--CCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC--------
Confidence 346889999999999666666 22 22222210 1122 23356788999999998 556664 56662
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccccccccCCCC
Q 040158 94 FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSF 140 (430)
Q Consensus 94 w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~G~~ 140 (430)
++.+.+.+=.+.+.+-=-++|..+...-||.+....-+..|.+
T Consensus 179 ----qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 ----QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred ----CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 1233444434443332236788888788888655444555544
No 136
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=33.00 E-value=1.2e+02 Score=28.64 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCc
Q 040158 60 YNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRV 118 (430)
Q Consensus 60 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v 118 (430)
.++.++.+++.|+.-+=--.+|.... ...-++-.+....+.+.+..+.| +.+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a-~~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ--EPNPGYNYDETYLARLDRIVDAA-QAYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS--TTSTTTSBTHHHHHHHHHHHHHH-HHTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc--CCCCCccccHHHHHHHHHHHHHH-HhCCCeE
Confidence 66899999999998776655552221 01102224555666666666665 4445443
No 137
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=32.85 E-value=1.4e+02 Score=28.28 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 040158 57 VKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 57 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 115 (430)
++...+.|..|.++|++.++++.-+.....+ ....+++..+.|++-...++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 5667899999999999999998765543211 012455556777776666677776
No 138
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.58 E-value=1.2e+02 Score=28.80 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=45.6
Q ss_pred cccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 040158 36 SISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 36 si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 115 (430)
.+.|..+.++|. ..... .......+++.++++|++.++.+..++...... -..++...+.|++=+-..+++++
T Consensus 27 ~~~f~~i~~~G~--l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGT--LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCe--EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 345667766653 12211 123467889999999999999987665442111 12456677777776666677765
No 139
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=32.35 E-value=1.2e+02 Score=29.95 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcccccccc
Q 040158 57 VKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYN 136 (430)
Q Consensus 57 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~ 136 (430)
++-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|+.....-+|++....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 34577899999999999777653 35552 234566666666554334678888888888876665566
Q ss_pred CCCCCC
Q 040158 137 GGSFAP 142 (430)
Q Consensus 137 ~G~~~P 142 (430)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666654
No 140
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.33 E-value=1.8e+02 Score=28.35 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=52.5
Q ss_pred cCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhh
Q 040158 11 ASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQAL 87 (430)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 87 (430)
+.+......+=.+.+|++|+..+|-+..=+|--|.+. .| +-+++ +..+-+.+.+.||..+.+.++-..+..+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~~g---l~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGEEG---LKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHHHH---HHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 3556777788889999999999999986677777643 12 23444 6667777899999999998765544444
No 141
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=31.72 E-value=1.5e+02 Score=34.62 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=46.6
Q ss_pred CeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeecccccccc---C-----CCCCce--
Q 040158 333 PTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFEWD---A-----GYTVRF-- 402 (430)
Q Consensus 333 p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~---~-----Gy~~rf-- 402 (430)
-|++++|.|.+... ..|. ++++ .++++.-=.+.|=|.|..+|-=-.. + +|.--|
T Consensus 506 kP~i~~Ey~hamgn---~~g~---------~~~y----w~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~ 569 (1021)
T PRK10340 506 KPRILCEYAHAMGN---GPGG---------LTEY----QNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGD 569 (1021)
T ss_pred CcEEEEchHhccCC---CCCC---------HHHH----HHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCCC
Confidence 35999999987631 1111 2233 3456666779999999999931110 1 122222
Q ss_pred ----------eeEEEcCCCCcccccchhHHHHHHHhc
Q 040158 403 ----------GITYVDFKNHLRRYLKYSAYWFKMFLL 429 (430)
Q Consensus 403 ----------GL~~VD~~~~~~R~pK~S~~~y~~ii~ 429 (430)
||+ +..|+||++++.||++.+
T Consensus 570 ~p~~~~f~~~Glv------~~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 570 YPNNYNFCIDGLI------YPDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CCCCcCcccceeE------CCCCCCChhHHHHHHhcc
Confidence 443 345889999999998764
No 142
>PRK12677 xylose isomerase; Provisional
Probab=31.06 E-value=4e+02 Score=27.32 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=45.6
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEE-EEcCCCCCchhhHHhhCCCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPF-VTLLHFDPPQALEEEYGGFL 95 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~ 95 (430)
-..|-++.++++|++.+=+.. ..+.|-.. ..... -+..+++-+.|.+.||+.. +|...|..|.+ +.|++.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~~---~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lt 102 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFGA---TDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFT 102 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCCC---Chhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCC
Confidence 368889999999999986632 23444431 11111 1246678888889999966 55554555543 237888
Q ss_pred Ch
Q 040158 96 SP 97 (430)
Q Consensus 96 ~~ 97 (430)
++
T Consensus 103 s~ 104 (384)
T PRK12677 103 SN 104 (384)
T ss_pred CC
Confidence 75
No 143
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=31.05 E-value=47 Score=32.32 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecCCCCC
Q 040158 318 GLQELLLYLKKKYNNPTIYITENGLADD 345 (430)
Q Consensus 318 gl~~~L~~~~~~Y~~p~I~ITENG~~~~ 345 (430)
||.-++- +.+++.| ++|||.|+=..
T Consensus 185 gl~g~~~--k~~~g~P-~lLTEHGIY~R 209 (268)
T PF11997_consen 185 GLLGALA--KYRYGRP-FLLTEHGIYTR 209 (268)
T ss_pred HHHHHHH--HHHhCCC-EEEecCCccHH
Confidence 6666554 3467876 99999999773
No 144
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.37 E-value=1.8e+02 Score=25.07 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCCc---hhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCC
Q 040158 58 KFYNDLINELLANDIKPFVTLLHFDPP---QALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDR 117 (430)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~H~~~P---~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~ 117 (430)
+=+.-+++.|++.|++|++.+. | .|. + |.|. +++..+.|.+=.+..+++.|=+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~----PvNg~wy-d-ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQ----PVNGKWY-D-YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--------HHHH-H-HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHcCCceEEEec----CCcHHHH-H-HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 4468899999999999999984 5 343 2 4664 5667777777777788888753
No 145
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=29.76 E-value=67 Score=38.24 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCEEEecccCCccc-----cC------CCCC---CCCCh----hHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 20 EDIKLMKKVGLDSFRFSISWTRIL-----PK------GKIS---GGVNP----LGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~-----p~------~~~~---g~~n~----~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
+.|+-||+|||+++=+.=-..... +. |... -.++. ...+=++++|++|.++||++|+.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 568899999999997753211110 00 0000 00111 134558899999999999999974
No 146
>PLN03153 hypothetical protein; Provisional
Probab=29.51 E-value=44 Score=35.65 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=41.8
Q ss_pred HHHhCC-CeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHH----HHHHHh--CCCceeEEeccCCCccccccccCC
Q 040158 66 ELLAND-IKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGD----FCFKTY--GDRVKLWASMNEPNGMVMNGYNGG 138 (430)
Q Consensus 66 ~l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~----~~~~~~--gd~v~~w~t~NEp~~~~~~gy~~G 138 (430)
.+++.| +.|+|+||||+.=. .-|.+-...+.++.|..-|+ .++++. +|+..-|..- ...||..-
T Consensus 326 G~les~p~~P~vSlHH~~~~~---p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~ 396 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEAVD---PFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQ 396 (537)
T ss_pred hHhhcCCCCCceeeeeccccc---cccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEE
Confidence 455555 99999999999711 11334444567777776552 233444 5666667653 66777765
Q ss_pred CCCCC
Q 040158 139 SFAPG 143 (430)
Q Consensus 139 ~~~Pg 143 (430)
.++-+
T Consensus 397 ~y~~~ 401 (537)
T PLN03153 397 VFPSI 401 (537)
T ss_pred EecCC
Confidence 55433
No 147
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=29.50 E-value=1.4e+02 Score=33.23 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEecc--cCCc--------------cccCCCCCCCCCh-----hHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 22 IKLMKKVGLDSFRFSI--SWTR--------------ILPKGKISGGVNP-----LGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 22 i~l~~~lG~~~~R~si--~W~r--------------i~p~~~~~g~~n~-----~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
|+-||+||++++=++= +... --|... -.++. ..++=++++|++|.++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y--~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF--FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc--cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999997763 1110 011100 01111 1245589999999999999999853
No 148
>PLN02960 alpha-amylase
Probab=29.47 E-value=1.1e+02 Score=34.86 Aligned_cols=94 Identities=10% Similarity=0.172 Sum_probs=58.2
Q ss_pred hhhchHHH-HHHHHHcCCCEEEeccc--------CC-------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEE
Q 040158 14 FYHHYKED-IKLMKKVGLDSFRFSIS--------WT-------RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVT 77 (430)
Q Consensus 14 ~y~~~~eD-i~l~~~lG~~~~R~si~--------W~-------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 77 (430)
.|.-..+. +.-+|+||++++=+.=- |- .+.|.= |. .+=++.+|++|.++||.+|+.
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y---Gt-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF---GT-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 45555544 89999999999877621 11 111110 22 234789999999999999998
Q ss_pred c--CCCCC--chhhH--H-----------h--hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 040158 78 L--LHFDP--PQALE--E-----------E--YGGF-------LSPKIVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 78 L--~H~~~--P~~l~--~-----------~--~ggw-------~~~~~~~~f~~ya~~~~~~~g 115 (430)
+ .|+.. +.-|. + + +..| .++++.+.+.+-++.-++.|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6 35422 11110 0 0 0112 346677888888888888885
No 149
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=28.85 E-value=71 Score=23.55 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=25.3
Q ss_pred HHHHHHHHh-CCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHH
Q 040158 61 NDLINELLA-NDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYG 107 (430)
Q Consensus 61 ~~~i~~l~~-~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya 107 (430)
+++++.|.+ .||+|.+|. ..|-.- -+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~L------ekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLL------EKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHH------HHHHHHHHHHHh
Confidence 578888875 799999986 455332 256677777763
No 150
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.66 E-value=2.8e+02 Score=28.13 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=59.1
Q ss_pred chHHHHHHHHHcCCCEEEecc-cCC-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-EEEEcCCCCCchhhHHhhCC
Q 040158 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYNDLINELLANDIK-PFVTLLHFDPPQALEEEYGG 93 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg 93 (430)
.-+|.+++|+++|++.+.+++ +-+ ++...-. ...+ .+-..+.++.+++.|+. ..++|. +++|.
T Consensus 106 i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~--R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg-------- 171 (375)
T PRK05628 106 TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD--RTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG-------- 171 (375)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC--CCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC--------
Confidence 346889999999999776666 332 2222110 1122 34567889999999998 555553 45552
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CCceeEEeccCCCccccccccCCC
Q 040158 94 FLSPKIVKDFVDYGDFCFKTYG-DRVKLWASMNEPNGMVMNGYNGGS 139 (430)
Q Consensus 94 w~~~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~~~~~gy~~G~ 139 (430)
++.+.|.+=.+.+.+ ++ +.|..+...=||......-+..|.
T Consensus 172 ----qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~ 213 (375)
T PRK05628 172 ----ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTALARRVRRGE 213 (375)
T ss_pred ----CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHHHHhhcCC
Confidence 123444444444433 44 566666655577654433333343
No 151
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=28.42 E-value=3.9e+02 Score=26.72 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=64.7
Q ss_pred hHHHHHHHHHcCCC--EEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC---C--CchhhHHh
Q 040158 18 YKEDIKLMKKVGLD--SFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF---D--PPQALEEE 90 (430)
Q Consensus 18 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~--~P~~l~~~ 90 (430)
..+-++.+++.|+. ++=+.+.|..-. +. -.+|++-+.--..+|++|+++|++.++-+.-+ + .|..-+..
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~--f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~ 101 (339)
T cd06604 26 VREIADEFRERDIPCDAIYLDIDYMDGY--RV--FTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGL 101 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECchhhCCC--Cc--eeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHH
Confidence 45667888888876 455555665421 11 23444433335799999999999998654322 1 22211100
Q ss_pred -------------h-----------CCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcc
Q 040158 91 -------------Y-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (430)
Q Consensus 91 -------------~-----------ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 130 (430)
+ -.|.|++..+.|.+.-+.+. ..| ---+|+=+|||..+
T Consensus 102 ~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 102 ENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred HCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCC-CceEeecCCCcccc
Confidence 0 13788899988877666554 233 13577889999865
No 152
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=28.41 E-value=4e+02 Score=26.94 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCCccCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchh
Q 040158 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQA 86 (430)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 86 (430)
-+-+|.=||+ |+--+ ...+.|++.+|+. | |.+-. -+....+++.++++|+..=+...|=.++..
T Consensus 73 iPlVADIHFd-~~lAl-~a~~~g~dkiRIN-------P-----GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~ 136 (346)
T TIGR00612 73 VPLVADIHFD-YRLAA-LAMAKGVAKVRIN-------P-----GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERR 136 (346)
T ss_pred CCEEEeeCCC-cHHHH-HHHHhccCeEEEC-------C-----CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHH
Confidence 4556777775 33333 2457799999874 3 33321 366889999999999999999999999999
Q ss_pred hHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 040158 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTY 114 (430)
Q Consensus 87 l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 114 (430)
+.++||+-+....++.-.++++.+ +.+
T Consensus 137 ~~~kyg~~t~eamveSAl~~v~~l-e~~ 163 (346)
T TIGR00612 137 LLEKYGDATAEAMVQSALEEAAIL-EKL 163 (346)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH-HHC
Confidence 999987644445666666666653 444
No 153
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=28.31 E-value=3.2e+02 Score=27.88 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=59.3
Q ss_pred CCccCchhhchHHHHH-HHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchh
Q 040158 8 GDIASGFYHHYKEDIK-LMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQA 86 (430)
Q Consensus 8 ~~~a~d~y~~~~eDi~-l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 86 (430)
+-+|+=||+. -++ ...+.|++..|+ -| |.+-. --+..+.+++.++++|+..=+...|=.++..
T Consensus 82 PlvADIHFd~---~lAl~a~~~G~~~iRI-------NP-----GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~ 145 (360)
T PRK00366 82 PLVADIHFDY---RLALAAAEAGADALRI-------NP-----GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKD 145 (360)
T ss_pred CEEEecCCCH---HHHHHHHHhCCCEEEE-------CC-----CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHH
Confidence 4455555542 122 234788999965 34 33411 0256889999999999999999999999999
Q ss_pred hHHhhCCCCChhhHHHHHHHHHHH
Q 040158 87 LEEEYGGFLSPKIVKDFVDYGDFC 110 (430)
Q Consensus 87 l~~~~ggw~~~~~~~~f~~ya~~~ 110 (430)
+.++||+-+....++.-.++++.+
T Consensus 146 ~~~~yg~~t~eamveSAl~~~~~l 169 (360)
T PRK00366 146 LLEKYGEPTPEALVESALRHAKIL 169 (360)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999986534445666666666653
No 154
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.28 E-value=2.4e+02 Score=27.06 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
.+|++.+++.|++.+|+.++-+.+. -..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~---------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD---------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH---------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6899999999999999987665431 245788888999999888873
No 155
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.96 E-value=2.4e+02 Score=28.09 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=45.5
Q ss_pred hHHHHHHHHHcCCCEEEecc----cCCc---cccCCCC----CCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchh
Q 040158 18 YKEDIKLMKKVGLDSFRFSI----SWTR---ILPKGKI----SGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQA 86 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si----~W~r---i~p~~~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 86 (430)
.++=|+.|+..++|.+.+-+ +|.- -.|.-+. +|.+.++. +.++++-++++||++|.-+ |+|.+
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~d---i~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQ---IREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHH---HHHHHHHHHHcCCEEEEee---cCccc
Confidence 56668999999999887766 5632 3343210 13455544 7799999999999999876 78865
Q ss_pred h
Q 040158 87 L 87 (430)
Q Consensus 87 l 87 (430)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 4
No 156
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=27.73 E-value=1.7e+02 Score=27.39 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
.++||++|++.+=++=|=.| +.+. | -.+-+..++++||+|++|.
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 47999999999888887666 3221 1 4578899999999999998
No 157
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=27.56 E-value=2.3e+02 Score=30.92 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc----hhhHHh----
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP----QALEEE---- 90 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~---- 90 (430)
++|++++++.|++.+|+..+.+.+ +-....++..+++|+...+++..-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 456899999999999999766543 124566777788888887776654444 111110
Q ss_pred ------------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCc
Q 040158 91 ------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (430)
Q Consensus 91 ------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 129 (430)
-.|...|. ...+..+.+-++++ .--...+-|-..+
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 13555554 34445555556665 2234567776654
No 158
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=27.30 E-value=52 Score=29.28 Aligned_cols=40 Identities=18% Similarity=0.371 Sum_probs=29.6
Q ss_pred cccccCCcHHHHHHHhhcCCC--CChhhhhhhcCCcceEEeecCcc
Q 040158 227 PVTFGNYPESMRRIVGKRLPK--FTEGESTLVKGSFDFLAVNYYTT 270 (430)
Q Consensus 227 pi~~G~YP~~~~~~l~~~lP~--ft~ee~~~ikg~~DFlGiNyYt~ 270 (430)
.++.|...+ .+...+|. +.|.|...|..++||+.++-++.
T Consensus 72 avl~Gkv~E----qlaP~lp~F~ynP~D~RFlG~PVD~IvF~Gls~ 113 (156)
T PF10107_consen 72 AVLKGKVSE----QLAPFLPEFPYNPKDARFLGSPVDFIVFDGLSD 113 (156)
T ss_pred HHHcchhHH----HhhhccCCCCCChhhheecCCCceEEEEcCCCC
Confidence 345676443 33344565 48999999999999999998876
No 159
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=27.20 E-value=1.3e+02 Score=28.08 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=29.9
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeE
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKP 74 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p 74 (430)
.-+.=++||++||.+++.| +|-+ |.- -++=|..+-+++.++|+..
T Consensus 136 ~vetAiaml~dmG~~SiKf-------fPm~---Gl~---~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKF-------FPMG---GLK---HLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE----------T---TTT---THHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeE-------eecC---Ccc---cHHHHHHHHHHHHHcCcee
Confidence 4566799999999999987 7876 532 3555888889999998753
No 160
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.16 E-value=1.1e+02 Score=29.25 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=40.6
Q ss_pred hhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEE
Q 040158 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVT 77 (430)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 77 (430)
....++.-|++++.+|.++.++........+.. ...-+..++.++.+.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 445667778999999999999964322111111 1112345677888899999999987654
No 161
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=27.04 E-value=1.6e+02 Score=31.03 Aligned_cols=96 Identities=19% Similarity=0.439 Sum_probs=57.5
Q ss_pred hHHH-HHHHHHcCCCEEEec-------ccCCc-cccCCCCC---------CCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 18 YKED-IKLMKKVGLDSFRFS-------ISWTR-ILPKGKIS---------GGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 18 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~p~~~~~---------g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
++.| ++++|+|.+...|+. -.|.. |-|..... -+-|+=| .+++++.|...|.+|++++.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 3455 689999999988862 13321 11111000 0112222 56899999999999999985
Q ss_pred CCCCchhhHHhhCCCCChhhHHHHHHHHHH--------HHHHhCC----CceeEEeccCCC
Q 040158 80 HFDPPQALEEEYGGFLSPKIVKDFVDYGDF--------CFKTYGD----RVKLWASMNEPN 128 (430)
Q Consensus 80 H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~--------~~~~~gd----~v~~w~t~NEp~ 128 (430)
+ |. ...+....|++||.. .=...|- .||+|.+=||-.
T Consensus 127 ---~--------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 ---L--------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred ---c--------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 1 22 233556667777643 2233342 499999999964
No 162
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.95 E-value=3.1e+02 Score=27.56 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
+++.+|++|-++..|=+-|. |+.. ...|..-.+|.+++.++|.++||-=++-+..+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~--~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDA--EEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCC--hHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 37899999999999988884 3322 46888889999999999999999999988777654
No 163
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.83 E-value=2.7e+02 Score=27.03 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCceeE
Q 040158 49 SGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLW 121 (430)
Q Consensus 49 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~w 121 (430)
+|.+|+++ ++++|+.|.+.|+..++.+-+-+- + ..-+.+...+..+.+.+.-+++++.+
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~GstGE----------~-~~Ls~~Er~~~~~~~~~~~~~~~~vi 71 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTTGE----------S-PTLSHEEHKKVIEFVVDLVNGRVPVI 71 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccCcc----------c-ccCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 48999877 679999999999999998754111 1 11224555666677777767776644
No 164
>PLN02389 biotin synthase
Probab=26.74 E-value=1.9e+02 Score=29.76 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=42.2
Q ss_pred chHHHHHHHHHcCCCEEEecccCCc-cccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTR-ILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~r-i~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
.-+|.++.||+.|++.|-.+++=++ ++|.-. ..- ..+..-+.++.+++.||+...++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885233 555431 111 34667789999999999887664
No 165
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=26.70 E-value=2.2e+02 Score=27.91 Aligned_cols=61 Identities=28% Similarity=0.346 Sum_probs=48.4
Q ss_pred chHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
--++|++...+.|++.+-+.++=|..+-.... +.=-++.++.+.+++...+++|+++-+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35899999999999999988866655543211 33346789999999999999999999887
No 166
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=26.47 E-value=1.5e+02 Score=28.78 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChh
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPK 98 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 98 (430)
.+|++...+.|++.+|+++..+ .++-..+.++.++++|+++.+++.+-. + -
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----C
Confidence 4788889999999999987332 255677899999999999999886421 1 1
Q ss_pred hHHHHHHHHHHHHHHhC
Q 040158 99 IVKDFVDYGDFCFKTYG 115 (430)
Q Consensus 99 ~~~~f~~ya~~~~~~~g 115 (430)
..+.+.++++.+.+ .|
T Consensus 136 ~~~~~~~~~~~~~~-~g 151 (266)
T cd07944 136 SDEELLELLELVNE-IK 151 (266)
T ss_pred CHHHHHHHHHHHHh-CC
Confidence 25667777777654 44
No 167
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=26.09 E-value=1.8e+02 Score=35.74 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=43.6
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCC---------------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc-
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWT---------------RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL- 78 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~---------------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL- 78 (430)
+....+-+.-+++|||+++=+|=-+. +|-|.- | +.+=+++++++|.++||..|+++
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 44567788999999999997764443 333332 2 34458899999999999999985
Q ss_pred -CCCC
Q 040158 79 -LHFD 82 (430)
Q Consensus 79 -~H~~ 82 (430)
.|..
T Consensus 829 ~NH~~ 833 (1693)
T PRK14507 829 PNHMG 833 (1693)
T ss_pred ccccC
Confidence 3553
No 168
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=26.01 E-value=62 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=25.9
Q ss_pred EEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHc
Q 040158 335 IYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKE 376 (430)
Q Consensus 335 I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~d 376 (430)
.+|+|.|++ .|..+-+|-+.-..+++.||..
T Consensus 2 r~~iE~GmG-----------~DlhGqD~TkAA~RAv~DAI~~ 32 (113)
T PF09585_consen 2 RLFIEMGMG-----------NDLHGQDYTKAAVRAVRDAISH 32 (113)
T ss_pred eEEEEeccc-----------ccccCCcHHHHHHHHHHHHHhh
Confidence 589999998 4667778999999999999954
No 169
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=25.79 E-value=59 Score=23.71 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHHHHHHH-hCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHH
Q 040158 61 NDLINELL-ANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDY 106 (430)
Q Consensus 61 ~~~i~~l~-~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 106 (430)
+++++.|. ..||+|.+|. ..|-.- -+++.+.|..|
T Consensus 16 ~E~v~~L~~~a~I~P~~T~-----~VW~~L------e~eN~eFF~aY 51 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTS-----TVWQKL------EKENPEFFKAY 51 (54)
T ss_pred HHHHHHHHHHcCCChHHHH-----HHHHHH------HHHCHHHHHHh
Confidence 57889995 5699999997 355322 24556667666
No 170
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.66 E-value=2.7e+02 Score=27.89 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=49.1
Q ss_pred CccCchhh--chHHHHHHHHHcCCCEEEeccc----C-------CccccCCC-------CCCCCChhHHHHHHHHHHHHH
Q 040158 9 DIASGFYH--HYKEDIKLMKKVGLDSFRFSIS----W-------TRILPKGK-------ISGGVNPLGVKFYNDLINELL 68 (430)
Q Consensus 9 ~~a~d~y~--~~~eDi~l~~~lG~~~~R~si~----W-------~ri~p~~~-------~~g~~n~~~~~~y~~~i~~l~ 68 (430)
|+|-.++. ..++-|+.|+..++|.+.+-++ | +.+-..+. .+|.+-.+- ++++++-++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~d---i~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQED---YKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHH---HHHHHHHHH
Confidence 55554443 3677799999999998877662 3 33322110 013345433 779999999
Q ss_pred hCCCeEEEEcCCCCCchhhH
Q 040158 69 ANDIKPFVTLLHFDPPQALE 88 (430)
Q Consensus 69 ~~gi~p~vtL~H~~~P~~l~ 88 (430)
++||++|.-+ |+|.+..
T Consensus 86 ~rgI~vIPEi---D~PGH~~ 102 (329)
T cd06568 86 ERHITVVPEI---DMPGHTN 102 (329)
T ss_pred HcCCEEEEec---CCcHHHH
Confidence 9999999876 8887643
No 171
>PRK10426 alpha-glucosidase; Provisional
Probab=25.43 E-value=5.8e+02 Score=28.16 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=65.6
Q ss_pred hHHHHHHHHHcCCCEEEecc-cCCccccCCC--C---CCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC---CCchhhH
Q 040158 18 YKEDIKLMKKVGLDSFRFSI-SWTRILPKGK--I---SGGVNPLGVKFYNDLINELLANDIKPFVTLLHF---DPPQALE 88 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W~ri~p~~~--~---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~ 88 (430)
..+-++.+++.|+..==+-| .|+....... . +-.+|.+-..-.+++|++|.+.|++.++-+.=+ +.|..-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 45667889999977554433 6764422211 0 013355444446799999999999988876532 2333211
Q ss_pred --Hh-h------C---------------CCCChhhHHHHHHHHHHHHHHhCCCceeE-EeccCC
Q 040158 89 --EE-Y------G---------------GFLSPKIVKDFVDYGDFCFKTYGDRVKLW-ASMNEP 127 (430)
Q Consensus 89 --~~-~------g---------------gw~~~~~~~~f~~ya~~~~~~~gd~v~~w-~t~NEp 127 (430)
++ | | .++|++..+.|.+..+..+...| |..| .=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 10 0 1 17889999999877665455555 6555 788994
No 172
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.06 E-value=1.5e+02 Score=28.44 Aligned_cols=61 Identities=7% Similarity=0.085 Sum_probs=39.8
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
-.+++.-+++++++|.+.++++-. +..+... ..+.-...++.++++++.+.+.||+..+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345677799999999999998531 1111110 011122356777888889999999887753
No 173
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.01 E-value=2.9e+02 Score=26.67 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=39.8
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCce
Q 040158 49 SGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVK 119 (430)
Q Consensus 49 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~ 119 (430)
+|.+|+++ ++++|+.|.+.|+..++.+-+-+- ...-+.+...+..+.+.+.-+++++
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~GstGE-----------~~~lt~~Er~~l~~~~~~~~~~~~~ 71 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTTGE-----------SPTLSDEEHEAVIEAVVEAVNGRVP 71 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCCcc-----------hhhCCHHHHHHHHHHHHHHhCCCCc
Confidence 48999877 679999999999999988753211 1122345666667777777777665
No 174
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=24.91 E-value=2.1e+02 Score=27.39 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=37.1
Q ss_pred HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
.++||++|++.+=++=|=.|-. +++ .-+.-.+-+..++++||+|++|+-
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~--------f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQY--------FGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCc--------CCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999999988887654433 221 125577889999999999999983
No 175
>PRK07094 biotin synthase; Provisional
Probab=24.89 E-value=1e+02 Score=30.50 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCEEEeccc-C-CccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 17 HYKEDIKLMKKVGLDSFRFSIS-W-TRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
.-+|+++.|++.|++.+-++++ - .++...-. ... ..+-+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~--~~~---s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH--PGM---SFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC--CCC---CHHHHHHHHHHHHHcCCeecceE
Confidence 4478999999999999999884 2 24444321 112 24557889999999999765443
No 176
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=24.88 E-value=4.7e+02 Score=22.84 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=37.9
Q ss_pred hhchHHHHHHHHHcCCCEEEeccc-CCc-cccCCCCCCCCChhHHHHHHHHHHHHHhCC-CeEEEE
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSIS-WTR-ILPKGKISGGVNPLGVKFYNDLINELLAND-IKPFVT 77 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~-W~r-i~p~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vt 77 (430)
...-++.++.|++.|++.+.+|+. ++. +...-. ...+ .+.+.+.|+.+.+.| +.+.+.
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~--~~~~---~~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN--RGHT---VEDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc--CCCC---HHHHHHHHHHHHHhCCcceEEe
Confidence 334477899999999999999985 543 211110 1112 466888899999999 554443
No 177
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.86 E-value=1.2e+02 Score=29.58 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHcCCCeeEEEeeecccccc
Q 040158 317 KGLQELLLYLKKKYNNPTIYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIKEGVNVKAYYIWTFWDDFE 393 (430)
Q Consensus 317 ~gl~~~L~~~~~~Y~~p~I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~E 393 (430)
.++...++.++++++....+..|.. -+++++.|++.|+|+.. +||+.
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv~------------------------tleea~~A~~~GaDiI~------LDn~~ 212 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIECE------------------------SLEEAKNAMNAGADIVM------CDNMS 212 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEeC------------------------CHHHHHHHHHcCCCEEE------ECCCC
Confidence 4788999999999974223444552 24688889999999887 78875
No 178
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=23.95 E-value=5.6e+02 Score=26.33 Aligned_cols=90 Identities=19% Similarity=0.306 Sum_probs=58.4
Q ss_pred CCccCchhhchHHHHHHHHHc-CCCEEEecc--cCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEE-EEcCCCCC
Q 040158 8 GDIASGFYHHYKEDIKLMKKV-GLDSFRFSI--SWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPF-VTLLHFDP 83 (430)
Q Consensus 8 ~~~a~d~y~~~~eDi~l~~~l-G~~~~R~si--~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~ 83 (430)
++.+.+-.++ .+|++.+.++ ++. .++++ .| + .. ..+.++.+.|.++||+.. ++...|..
T Consensus 33 ~g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~------d---~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~ 95 (378)
T TIGR02635 33 EGAARNVFEK-IEDAALVHRLTGIC-PTVALHIPW------D---RV------EDYEELARYAEELGLKIGAINPNLFQD 95 (378)
T ss_pred CCCCCCHHHH-HHHHHHHHhhcCCC-CceeeccCC------c---cc------cCHHHHHHHHHHcCCceeeeeCCccCC
Confidence 3344444444 6788888888 555 66665 44 2 11 226788888999999998 78776666
Q ss_pred chhhHHhhCCCCCh--hhHHHHHHHHHHH---HHHhCCC
Q 040158 84 PQALEEEYGGFLSP--KIVKDFVDYGDFC---FKTYGDR 117 (430)
Q Consensus 84 P~~l~~~~ggw~~~--~~~~~f~~ya~~~---~~~~gd~ 117 (430)
|.. ++|.+.|+ ++.+.-.++++.| ++.+|..
T Consensus 96 ~~~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 96 DDY---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred ccc---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 643 24788886 4556666666665 4667763
No 179
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=23.75 E-value=1.7e+02 Score=28.21 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=33.5
Q ss_pred HHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
.++||++|++.+=++=|=.|.. +++.. +.-.+=+..++++||+|++|+-
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~--------f~Etd-~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQY--------FGETD-ELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCc--------cCcCH-HHHHHHHHHHHHCCCEEEEEcC
Confidence 5899999999888887654432 22211 2233444459999999999983
No 180
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=23.47 E-value=1e+02 Score=32.09 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEecc------cCCccccCCCCCCCC--ChhHHHHHHHHHHHHHhCCCeEEEEc--CCC
Q 040158 20 EDIKLMKKVGLDSFRFSI------SWTRILPKGKISGGV--NPLGVKFYNDLINELLANDIKPFVTL--LHF 81 (430)
Q Consensus 20 eDi~l~~~lG~~~~R~si------~W~ri~p~~~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~ 81 (430)
+=++.+++||+++.=++= ++.+--.... -.+ ..-.++-.+++|+++.++||+.++++ .|-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy--~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~ 102 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDY--TKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHT 102 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccch--hhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 668899999999985541 1111111110 111 12346778999999999999999987 553
No 181
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.47 E-value=2.8e+02 Score=27.10 Aligned_cols=112 Identities=15% Similarity=0.183 Sum_probs=63.0
Q ss_pred hHHHHHHHHHcCCC--EEEecccCCccc-----cCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC-CC-ch-h-
Q 040158 18 YKEDIKLMKKVGLD--SFRFSISWTRIL-----PKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF-DP-PQ-A- 86 (430)
Q Consensus 18 ~~eDi~l~~~lG~~--~~R~si~W~ri~-----p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~-~~-P~-~- 86 (430)
.++=++.+++.||. ++=+.+.|..-- .++.-+-.+|++-..-..++|++|.++|++.++.++-. .. |. .
T Consensus 27 v~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~ 106 (292)
T cd06595 27 YLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQ 106 (292)
T ss_pred HHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHH
Confidence 34456777777765 566666785421 01100124565555667899999999999999877532 11 11 1
Q ss_pred ---hHHhhC-----------CCCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcc
Q 040158 87 ---LEEEYG-----------GFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (430)
Q Consensus 87 ---l~~~~g-----------gw~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 130 (430)
+.+..+ .++|++..+.|-+-....+...| -.-+|+=+|||..+
T Consensus 107 y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W~D~~E~~~~ 163 (292)
T cd06595 107 YPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEEecCCCCccc
Confidence 222111 25677666655433333333333 13478889999754
No 182
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.03 E-value=7.7e+02 Score=24.69 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=105.5
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccC----------CCC----CCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPK----------GKI----SGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDP 83 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~----------~~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 83 (430)
-..-.+..|.+|++++=+--.|....+. +.. +...|..--...+.+-..++++|=+|+|-
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvI------ 151 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVI------ 151 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEe------
Confidence 3556788899999999887778721111 100 11233322344667778888999999876
Q ss_pred chhhHHhhCCCCChhhHHHHHHHHHHHHHHhCC-CceeEEeccCCCccccccccCCCCCCCcCCCCCCCCCCCCCCChHH
Q 040158 84 PQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGD-RVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPY 162 (430)
Q Consensus 84 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd-~v~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~ 162 (430)
|. || .|+.-.--|.+.|..+.+--.. -.--|++.===..-+..|+..|.-.++.... ..+|+...+....-
T Consensus 152 p~------GG-~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~-ViG~~v~~~~~~~~ 223 (323)
T COG2515 152 PE------GG-SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVE-VIGIDVSADPEKLK 223 (323)
T ss_pred cc------CC-cCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCc-eEEEeecCCHHHHH
Confidence 41 67 7776556677777776554432 1222333222222334555555544433221 12232211111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEeecceeecCC--CCHHHHHHHHHHhhhhcccccccccccCCcHHHHHH
Q 040158 163 IAAHTMLLSHEALVNLYKHKYQPYQKGKIGITILTHWFEPKF--KTAASRQAASRARDFFFGWFADPVTFGNYPESMRRI 240 (430)
Q Consensus 163 ~a~hn~l~Aha~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~~--~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~ 240 (430)
+-.-++..+.++.+.+. ...-+......++|.- .+++++++-+.... .-+..+||+++|+==.-++..
T Consensus 224 ~qv~~L~~~~a~~~~~~---------~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~-~eGillDpVYtgKam~Glid~ 293 (323)
T COG2515 224 EQVLNLAQATAELLGLG---------SEADVLLSDDYHHPGYGKPNEEDIEAIKLLAR-LEGILLDPVYTGKAMYGLIDL 293 (323)
T ss_pred HHHHHHHHHHHHHcCCC---------CCceEEEEecccCCccCCcCHHHHHHHHHHHH-hhCcccccccchHHHHHHHHH
Confidence 22345555555544432 2344555566666653 35677776554322 346789999998743344444
Q ss_pred H
Q 040158 241 V 241 (430)
Q Consensus 241 l 241 (430)
+
T Consensus 294 ~ 294 (323)
T COG2515 294 A 294 (323)
T ss_pred H
Confidence 4
No 183
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=22.97 E-value=78 Score=26.84 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=25.7
Q ss_pred EEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHH
Q 040158 335 IYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIK 375 (430)
Q Consensus 335 I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~ 375 (430)
.+|+|.|++ .|..+-+|-+.-..+++.||.
T Consensus 2 rl~iEmGmG-----------~DlhGqD~TkAA~RAvrDAI~ 31 (116)
T TIGR02058 2 ILFIEMGMG-----------VDQHGQNITKAAMRAVRNAIA 31 (116)
T ss_pred eEEEEeccc-----------ccccCccHHHHHHHHHHHHHh
Confidence 589999998 467788899999999999985
No 184
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.59 E-value=1.3e+02 Score=29.14 Aligned_cols=81 Identities=9% Similarity=-0.037 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhh
Q 040158 20 EDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKI 99 (430)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 99 (430)
.+++++++.|++.+|+.++=|...-... -|.--++.++-..+.++.+++.|+++.++..+| .+ +... .
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~~~---~ 149 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEA-LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GYKA---N 149 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cCCC---C
Confidence 5789999999999999886554432210 022235678889999999999999998876554 11 1112 2
Q ss_pred HHHHHHHHHHHHH
Q 040158 100 VKDFVDYGDFCFK 112 (430)
Q Consensus 100 ~~~f~~ya~~~~~ 112 (430)
.+.++++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 4566677776654
No 185
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=22.43 E-value=8e+02 Score=24.62 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=71.0
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCch----------hhHHhhC-----CCCC---hhhHHHHHHHHHHHH
Q 040158 50 GGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQ----------ALEEEYG-----GFLS---PKIVKDFVDYGDFCF 111 (430)
Q Consensus 50 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~----------~l~~~~g-----gw~~---~~~~~~f~~ya~~~~ 111 (430)
+-.+.+.+..++++.+++.++|-..++=|+|.+.-. ....... ..+. .++++.|++-|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999964311 0000000 0111 257888888776665
Q ss_pred HHhC-CCceeEEeccCCCccccccccCCCC-CCCc--CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040158 112 KTYG-DRVKLWASMNEPNGMVMNGYNGGSF-APGR--CSNYVGNCTAGDSATEPYIAAHTMLLSHEALVNLYKHKYQPYQ 187 (430)
Q Consensus 112 ~~~g-d~v~~w~t~NEp~~~~~~gy~~G~~-~Pg~--~~~~~~~~~~~~~~~~~~~a~hn~l~Aha~a~~~~r~~~~~~~ 187 (430)
+. | |-|. +.+-.||+...| .|.. +.. - +|-| +-|-+.--...++.+|+..
T Consensus 153 ~a-GfDgVe---------ih~ahGyLl~qFlSp~~N~RtD----~-yGGs-------lenR~Rf~~eii~~ir~~~---- 206 (337)
T PRK13523 153 EA-GFDVIE---------IHGAHGYLINEFLSPLSNKRTD----E-YGGS-------PENRYRFLREIIDAVKEVW---- 206 (337)
T ss_pred Hc-CCCEEE---------EccccchHHHHhcCCccCCcCC----C-CCCC-------HHHHHHHHHHHHHHHHHhc----
Confidence 53 3 4333 346667887664 2321 111 0 1111 2233333445556666653
Q ss_pred CCcEEEEeecc
Q 040158 188 KGKIGITILTH 198 (430)
Q Consensus 188 ~~~IGi~~~~~ 198 (430)
+..||+-++..
T Consensus 207 ~~~v~vRis~~ 217 (337)
T PRK13523 207 DGPLFVRISAS 217 (337)
T ss_pred CCCeEEEeccc
Confidence 35688777654
No 186
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=22.32 E-value=31 Score=16.43 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=6.8
Q ss_pred CCeeEEEee
Q 040158 378 VNVKAYYIW 386 (430)
Q Consensus 378 v~v~GY~~W 386 (430)
++|+-|+.|
T Consensus 3 cpviryccw 11 (11)
T PF08097_consen 3 CPVIRYCCW 11 (11)
T ss_pred cchhheecC
Confidence 577788877
No 187
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.29 E-value=7.8e+02 Score=24.48 Aligned_cols=40 Identities=13% Similarity=-0.034 Sum_probs=33.5
Q ss_pred Ccccc---CCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC
Q 040158 40 TRILP---KGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF 81 (430)
Q Consensus 40 ~ri~p---~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 81 (430)
++..| ... +-++.+-+..++++.+.+.++|-..++=|+|-
T Consensus 63 ~~~~~~~~~~~--~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 63 HLEEPGIIGNV--VLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred cccCCCcCCCc--ccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 46666 322 67888899999999999999999999999993
No 188
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.18 E-value=49 Score=20.18 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.5
Q ss_pred HHHHHHHHHhCCCeE
Q 040158 60 YNDLINELLANDIKP 74 (430)
Q Consensus 60 y~~~i~~l~~~gi~p 74 (430)
-.++++.+.+.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457888899999987
No 189
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=22.13 E-value=2.3e+02 Score=27.32 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=32.1
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHH
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINEL 67 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l 67 (430)
.....+||++++++|++.+=|++-= |+ |.+|.+. ..++++..
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~----~d----g~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLD----VD----GHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeEC----CC----CCcCHHH---HHHHHHHh
Confidence 4567899999999999999999742 22 7899765 44666666
No 190
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.79 E-value=1.1e+02 Score=30.76 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChh
Q 040158 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPK 98 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 98 (430)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|++..+++..- + ..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MA 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CC
Confidence 589999999999999998755432 124688999999999999988532 1 12
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 040158 99 IVKDFVDYGDFCFKTYGD 116 (430)
Q Consensus 99 ~~~~f~~ya~~~~~~~gd 116 (430)
..+.+++.++.+. .+|-
T Consensus 142 ~~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGA 158 (337)
T ss_pred CHHHHHHHHHHHH-hCCC
Confidence 3567777777754 4653
No 191
>PTZ00445 p36-lilke protein; Provisional
Probab=21.65 E-value=1.9e+02 Score=27.31 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=39.5
Q ss_pred HHHHHHcCCCEEEecccCCcccc-CCCCCCCCChh---------HHHHHHHHHHHHHhCCCeEEEEcC
Q 040158 22 IKLMKKVGLDSFRFSISWTRILP-KGKISGGVNPL---------GVKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~p-~~~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
+++|++.|++++=+.++=.-|-- .| |-.++. +-.-...++.+|.++||..+|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg---G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG---GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc---cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999998887665531 11 322222 234477899999999999988765
No 192
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=21.62 E-value=3.3e+02 Score=25.80 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHHHHcCCCe-EEEeecCCCCCCCCCcccccCchhHHHHHHHHHHHHHHHHH--cCCCeeEEE
Q 040158 314 VHPKGLQELLLYLKKKYNNPT-IYITENGLADDASLPLKVALKDSMRIRYLHSHLEYLLKAIK--EGVNVKAYY 384 (430)
Q Consensus 314 i~P~gl~~~L~~~~~~Y~~p~-I~ITENG~~~~~~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v~GY~ 384 (430)
++-+.|..+..++..+=.... ++|---|.+.++. + -...-..||.+||.++.+.|+ .+|.+.|-=
T Consensus 117 iDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~s-----t-~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiG 184 (219)
T PF11775_consen 117 IDGEALRWAAERLLARPEQRKILIVISDGAPADDS-----T-LSANDGDYLDAHLRQVIAEIETRSDVELIAIG 184 (219)
T ss_pred CcHHHHHHHHHHHHcCCccceEEEEEeCCCcCccc-----c-cccCChHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 555666666666655532222 6666777776321 1 112345699999999999996 589988854
No 193
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.59 E-value=1e+02 Score=27.54 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=41.6
Q ss_pred hhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEc
Q 040158 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTL 78 (430)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 78 (430)
....++-+++++.+|++.+++...+-...+.... ...-....+.++.+.+.+.++|+++.+=-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDT-EENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSH-HHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCH-HHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 5677888999999999999999764111111100 01112346677888888889999877653
No 194
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.52 E-value=6.8e+02 Score=25.65 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=54.9
Q ss_pred cCchhhchHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEE-EcCCCCCchhhHH
Q 040158 11 ASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFV-TLLHFDPPQALEE 89 (430)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tL~H~~~P~~l~~ 89 (430)
++-..-...+-++.++++|++.+=| ....+.|.+. ...+.. ...+++=+.|.++||++.. +..-+..|.+ .
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~~---~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~--~ 98 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFGA---PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF--K 98 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCCC---ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc--c
Confidence 4444456788899999999998854 3344566541 111111 3366778889999999654 4322222322 1
Q ss_pred hhCCCCChh--hHHHHHHHHHH---HHHHhCCC
Q 040158 90 EYGGFLSPK--IVKDFVDYGDF---CFKTYGDR 117 (430)
Q Consensus 90 ~~ggw~~~~--~~~~f~~ya~~---~~~~~gd~ 117 (430)
.|++.+++ ..+.-.++.+. +++.+|-.
T Consensus 99 -~g~las~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 99 -DGGFTSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 26777753 22222222222 35667653
No 195
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.96 E-value=1.8e+02 Score=30.53 Aligned_cols=60 Identities=27% Similarity=0.311 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEecc-cCC-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCc
Q 040158 19 KEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPP 84 (430)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 84 (430)
+|.+++|++.|++.+-+++ +-+ +++..-. -..+ ++.+.+.+..|+++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~--K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIK--KGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc--CCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999988888 433 2222110 1122 45677999999999999887764 3445
No 196
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=20.89 E-value=4.2e+02 Score=26.84 Aligned_cols=97 Identities=11% Similarity=0.158 Sum_probs=59.4
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCC-CCCCCChhHHHHHHHHHHHHHhCCCeE-EEEcCCCCCchhhHHhhCCCC
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGK-ISGGVNPLGVKFYNDLINELLANDIKP-FVTLLHFDPPQALEEEYGGFL 95 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p-~vtL~H~~~P~~l~~~~ggw~ 95 (430)
-++.++.|+++|++.+.+++ ..+-++-- .-|... ..+-..+.|+.+++.|+.. -++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 46889999999999666555 22222110 001111 1334667888999999974 45553 45552
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCccc
Q 040158 96 SPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMV 131 (430)
Q Consensus 96 ~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 131 (430)
++.+.|.+=.+.+.+-=-++|..+...=||.+..
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 2355666666666543336788888888888643
No 197
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.74 E-value=1.5e+02 Score=28.98 Aligned_cols=69 Identities=17% Similarity=0.339 Sum_probs=46.4
Q ss_pred hHHHHHHHHHcCCCEEEecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCCh
Q 040158 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSP 97 (430)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 97 (430)
.++=+++++++||+.+.+..= +.-+++.+++|+++++.+.++.| +|.+|--..|.=++..|.-..++
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~ 174 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTR 174 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE
T ss_pred HHHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHH
Confidence 366689999999999998751 22457899999999999999987 55666555677666655444444
Q ss_pred hh
Q 040158 98 KI 99 (430)
Q Consensus 98 ~~ 99 (430)
|.
T Consensus 175 Eg 176 (273)
T PF10566_consen 175 EG 176 (273)
T ss_dssp --
T ss_pred HH
Confidence 43
No 198
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.61 E-value=3.5e+02 Score=27.38 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=59.0
Q ss_pred chhhchHHHHHHHHHcCCCEEEecccCCccccCC--CCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHh
Q 040158 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKG--KISGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEE 90 (430)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~--~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 90 (430)
+.+-.-++=++-|.+.|++-+-+|+ +.+-|.- ...| ..+=.+++--++.+.+.+.||..+++ |.|+
T Consensus 198 ng~~L~~~lv~eLeeAGLdRiNlSv--~aLDpk~Ak~L~G-~~dYdv~kvle~aE~i~~a~idvlIa------Pv~l--- 265 (414)
T COG2100 198 NGVLLSKKLVDELEEAGLDRINLSV--DALDPKLAKMLAG-RKDYDVKKVLEVAEYIANAGIDVLIA------PVWL--- 265 (414)
T ss_pred CceeccHHHHHHHHHhCCceEEeec--ccCCHHHHHHhcC-ccccCHHHHHHHHHHHHhCCCCEEEe------eeec---
Confidence 3445557778999999999666666 3444431 1113 22223677889999999999999998 8887
Q ss_pred hCCCCChhhHHHHHHHHHHHH
Q 040158 91 YGGFLSPKIVKDFVDYGDFCF 111 (430)
Q Consensus 91 ~ggw~~~~~~~~f~~ya~~~~ 111 (430)
.|. |.+-...+.+||+.+-
T Consensus 266 -PG~-ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 -PGV-NDDEMPKIIEWAREIG 284 (414)
T ss_pred -CCc-ChHHHHHHHHHHHHhC
Confidence 454 5555678888887763
No 199
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=20.37 E-value=3.4e+02 Score=28.01 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=67.7
Q ss_pred chHHHHHHHHHcCCCEEE--ecccCCccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCC---CCc---hhhH
Q 040158 17 HYKEDIKLMKKVGLDSFR--FSISWTRILPKGKISGGVNPLGVKFYNDLINELLANDIKPFVTLLHF---DPP---QALE 88 (430)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R--~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P---~~l~ 88 (430)
...+-++.+++.|+..== +...|..-... -.+|++-+.-..++++.|.++|++.++.++-+ +.+ ..-.
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~----f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~ 119 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD----FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDE 119 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT----T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc----cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhh
Confidence 356678888988887544 44456553221 45777666668899999999999988876522 222 1100
Q ss_pred --Hh-h-----CC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEeccCCCcc
Q 040158 89 --EE-Y-----GG----------------FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (430)
Q Consensus 89 --~~-~-----gg----------------w~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 130 (430)
++ + .| |.|++..+.|.+..+.+++.+| ---+|+=+|||..+
T Consensus 120 ~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 120 AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 00 0 12 7889999999887777776655 24578889999865
No 200
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.30 E-value=4.6e+02 Score=25.15 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=39.6
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeEEEEcCCCCCchhhHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcee
Q 040158 49 SGGVNPLGVKFYNDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKL 120 (430)
Q Consensus 49 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~ 120 (430)
+|.+|+++ ++++++.|.+.|+.-++.+-+-+= + ..-+.+...+.++.+.+.-+++++.
T Consensus 12 dg~iD~~~---~~~~i~~l~~~Gv~gi~~~GstGE----------~-~~ls~~Er~~l~~~~~~~~~~~~~v 69 (281)
T cd00408 12 DGEVDLDA---LRRLVEFLIEAGVDGLVVLGTTGE----------A-PTLTDEERKEVIEAVVEAVAGRVPV 69 (281)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCCcc----------c-ccCCHHHHHHHHHHHHHHhCCCCeE
Confidence 48999877 779999999999999987754111 1 1112455566677777776677663
No 201
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=20.27 E-value=2.4e+02 Score=30.80 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcC
Q 040158 57 VKFYNDLINELLANDIKPFVTLL 79 (430)
Q Consensus 57 ~~~y~~~i~~l~~~gi~p~vtL~ 79 (430)
++=++++|++|.++||++|+.+-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 35589999999999999999753
Done!