BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040159
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCR 143
CAVCL + ++GE+ R LP C H FH C+DMWL SHS CPLCR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPP 151
C +CL +EGE VR LP C+HLFH C+D WL ++ CP+CR + A P
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 86 MPVFRFSSKD--CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCR 143
+P +RF+ + + C VC+ DF+ + +RVLP C H FH C+D WL ++ CP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
Query: 144 ANA 146
A++
Sbjct: 68 ADS 70
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCR----ANANAAPPPHLV 155
C VC D+ GE VR LP C HLFH CI WL H +CP+CR A PP L
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLT 75
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPPP 152
E C +C ++ +G+ LP C H FH PC+ +WL CP+CR PPP
Sbjct: 39 QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRC---MFPPP 90
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLC 142
+ CAVCL DFK +++ + P C H FH C+ WL CPLC
Sbjct: 16 ELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCR-----ANANAAP 150
+E+ C +C+ +G +LP C H F CID W H NCP+CR AN ++ P
Sbjct: 14 DEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRAN 145
D C C + K+ + V V EC H FH C+ +W+ ++ CPLC+ +
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPPPHLVL 156
NE C +C F E V C H F CI+ W+ CP+CR + + LVL
Sbjct: 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDI-KSKTYSLVL 106
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAP 150
NE C +C F E V C H F CI+ W+ CP+CR + +
Sbjct: 63 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPPPHLVL 156
NE C +C F E V C H F CI+ W+ CP+CR + + LVL
Sbjct: 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS-LVL 106
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPP 151
C +C G F + + ECLH F CI +L + CP+C + P
Sbjct: 14 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 61
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPP 151
C +C G F + + ECLH F CI +L + CP+C + P
Sbjct: 18 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPP 151
C +C G F + + ECLH F CI +L + CP+C + P
Sbjct: 18 CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144
+ C +CL D LP CLH F CI W+ + CPLC+
Sbjct: 6 ERCPICLED--PSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKV 48
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 100 TCAVCLGDFKEGEQ---VRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147
+C +C+ + E Q + V EC H+F C+ L + + CP CR N
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 94 KDCNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLC 142
++ ++ C +CL D V + C HL H C + L CPLC
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148
C +CL D V + C HL H C + L CPLC ++
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 100 TCAVCLGDFKEGEQ---VRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147
+C +C+ + E Q + V EC H+F C+ L + + CP CR N
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 100 TCAVCLGDFKEGEQ---VRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147
+C +C+ + E Q + V EC H+F C+ L + + CP CR N
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 100 TCAVCLGDFKEGEQ---VRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147
+C +C+ + E Q + V EC H+F C+ L + + CP CR N
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 100 TCAVCLGDFKEGEQ---VRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147
+C +C+ + E Q + V EC H+F C+ L + + CP CR N
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 120 CLHLFHVPCIDMWLSSHSNCPL 141
C H FH CI WL + CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 120 CLHLFHVPCIDMWLSSHSNCPL 141
C H FH CI WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 120 CLHLFHVPCIDMWLSSHSNCPL 141
C H FH CI WL + CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 120 CLHLFHVPCIDMWLSSHSNCPL 141
C H FH CI WL + CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 120 CLHLFHVPCIDMWLSSHSNCPL 141
C H FH CI WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 120 CLHLFHVPCIDMWLSSHSNCPL 141
C H FH CI WL + CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 120 CLHLFHVPCIDMWLSSHSNCPL 141
C H FH CI WL + CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLC 142
C +C F ++P+C H + CI +LS + CP C
Sbjct: 25 CGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-SNCPLCRA 144
C +C ++ R+ P C L CI WL+ + CP CRA
Sbjct: 25 CFICXEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRA 66
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPPPHLVLTLPD 160
C++C G + + ECLH F CI + CP C + P L+ P
Sbjct: 18 CSICKGYLIDATTIT---ECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP----LSGPS 70
Query: 161 SG 162
SG
Sbjct: 71 SG 72
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 92 SSKDCNEDT---CAVCL----GDFKEGEQVRVLPECLHLFHVPCIDMWLSS-----HSNC 139
S K C +D C VC G ++ ++ + EC FH+ C+D LSS C
Sbjct: 160 SCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYC 219
Query: 140 PLCRANA 146
P CR +A
Sbjct: 220 PECRNDA 226
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 101 CAVCLGDFKEGEQVRVLPECLHLFHV---PCIDMWLSSHSN---CPLCRANANAAPPPHL 154
C +C+ F E EQ+R P+ LH H C++ L+S N CP C L
Sbjct: 18 CPICMESFTE-EQLR--PKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74
Query: 155 V--LTLPDSG 162
LT+ SG
Sbjct: 75 TDNLTVLKSG 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,371,388
Number of Sequences: 62578
Number of extensions: 184500
Number of successful extensions: 304
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 49
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)