Query 040159
Match_columns 176
No_of_seqs 149 out of 1612
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 1.6E-21 3.5E-26 160.6 8.5 77 75-152 204-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 4.8E-17 1E-21 96.8 1.9 44 99-143 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.5 1.4E-14 3E-19 95.3 1.9 47 96-143 17-73 (73)
4 PHA02929 N1R/p28-like protein; 99.4 9.9E-14 2.2E-18 110.0 4.5 73 75-147 147-227 (238)
5 COG5540 RING-finger-containing 99.4 1.7E-13 3.6E-18 110.2 3.4 49 98-147 323-372 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.3 1.5E-12 3.2E-17 107.4 5.4 67 79-146 268-344 (491)
7 PF12861 zf-Apc11: Anaphase-pr 99.2 2E-11 4.4E-16 81.5 3.2 57 91-147 14-82 (85)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 1.7E-11 3.7E-16 74.7 1.9 46 98-147 2-48 (50)
9 cd00162 RING RING-finger (Real 99.1 4.8E-11 1E-15 70.0 3.7 44 100-146 1-45 (45)
10 PF13923 zf-C3HC4_2: Zinc fing 99.1 6.8E-11 1.5E-15 68.3 2.8 39 101-142 1-39 (39)
11 PLN03208 E3 ubiquitin-protein 99.1 1.1E-10 2.4E-15 89.4 3.9 48 97-148 17-80 (193)
12 KOG0320 Predicted E3 ubiquitin 99.0 2.8E-10 6.1E-15 85.4 4.8 47 99-147 132-178 (187)
13 PHA02926 zinc finger-like prot 99.0 2.1E-10 4.6E-15 89.1 3.3 54 96-149 168-232 (242)
14 COG5194 APC11 Component of SCF 99.0 1.6E-10 3.5E-15 75.5 2.2 49 98-146 20-80 (88)
15 KOG1734 Predicted RING-contain 99.0 7.2E-11 1.6E-15 93.8 0.6 50 96-146 222-280 (328)
16 KOG0317 Predicted E3 ubiquitin 99.0 4E-10 8.6E-15 90.5 3.1 48 96-147 237-284 (293)
17 PF14634 zf-RING_5: zinc-RING 98.9 6.4E-10 1.4E-14 65.9 2.9 44 100-144 1-44 (44)
18 KOG0802 E3 ubiquitin ligase [P 98.9 3.7E-10 7.9E-15 99.9 2.4 50 96-146 289-340 (543)
19 PF00097 zf-C3HC4: Zinc finger 98.9 1.4E-09 3E-14 63.3 2.9 39 101-142 1-41 (41)
20 KOG2930 SCF ubiquitin ligase, 98.9 4.8E-10 1E-14 76.8 0.9 51 96-146 44-107 (114)
21 PF15227 zf-C3HC4_4: zinc fing 98.9 1.1E-09 2.4E-14 64.2 2.1 38 101-142 1-42 (42)
22 KOG0823 Predicted E3 ubiquitin 98.8 1.8E-09 4E-14 84.3 3.3 47 97-147 46-95 (230)
23 smart00184 RING Ring finger. E 98.8 3.2E-09 6.9E-14 60.0 2.9 38 101-142 1-39 (39)
24 smart00504 Ubox Modified RING 98.8 9.3E-09 2E-13 65.1 4.0 44 99-146 2-45 (63)
25 KOG1493 Anaphase-promoting com 98.8 6.3E-10 1.4E-14 72.2 -1.7 51 96-146 18-80 (84)
26 TIGR00599 rad18 DNA repair pro 98.6 1.8E-08 3.8E-13 85.5 3.4 48 97-148 25-72 (397)
27 smart00744 RINGv The RING-vari 98.5 6.7E-08 1.5E-12 58.5 2.7 42 100-143 1-49 (49)
28 COG5219 Uncharacterized conser 98.5 2.1E-08 4.5E-13 91.3 -0.2 49 96-146 1467-1522(1525)
29 KOG0828 Predicted E3 ubiquitin 98.4 2.6E-07 5.7E-12 79.1 5.1 49 98-147 571-634 (636)
30 PF11793 FANCL_C: FANCL C-term 98.4 5.4E-08 1.2E-12 63.4 0.0 50 98-147 2-66 (70)
31 KOG2164 Predicted E3 ubiquitin 98.4 8.7E-08 1.9E-12 82.4 1.0 47 98-148 186-237 (513)
32 COG5574 PEX10 RING-finger-cont 98.4 1.6E-07 3.4E-12 74.8 2.3 48 97-148 214-263 (271)
33 PF13445 zf-RING_UBOX: RING-ty 98.4 2.5E-07 5.4E-12 54.4 2.3 34 101-136 1-35 (43)
34 TIGR00570 cdk7 CDK-activating 98.3 6.1E-07 1.3E-11 73.6 3.6 50 98-148 3-55 (309)
35 KOG0287 Postreplication repair 98.3 3E-07 6.5E-12 75.6 1.6 45 100-148 25-69 (442)
36 COG5432 RAD18 RING-finger-cont 98.2 6.8E-07 1.5E-11 72.2 2.4 44 99-146 26-69 (391)
37 KOG2177 Predicted E3 ubiquitin 98.1 1.2E-06 2.5E-11 70.3 1.7 44 97-144 12-55 (386)
38 PF04564 U-box: U-box domain; 98.1 1.7E-06 3.7E-11 56.7 1.9 47 98-148 4-51 (73)
39 KOG1039 Predicted E3 ubiquitin 98.1 9.2E-07 2E-11 73.8 0.4 61 97-157 160-232 (344)
40 KOG0827 Predicted E3 ubiquitin 98.1 1.6E-06 3.4E-11 72.5 1.7 45 99-143 5-52 (465)
41 KOG4265 Predicted E3 ubiquitin 98.0 2.8E-06 6E-11 70.4 2.8 47 98-148 290-337 (349)
42 KOG0804 Cytoplasmic Zn-finger 98.0 2.1E-06 4.6E-11 72.9 1.5 46 99-147 176-222 (493)
43 KOG1645 RING-finger-containing 97.9 7.4E-06 1.6E-10 68.9 3.4 49 98-146 4-55 (463)
44 PF14835 zf-RING_6: zf-RING of 97.8 3.2E-06 6.9E-11 53.5 -0.6 42 100-146 9-50 (65)
45 KOG0311 Predicted E3 ubiquitin 97.8 2.9E-06 6.4E-11 70.1 -1.2 49 96-147 41-90 (381)
46 KOG4445 Uncharacterized conser 97.7 7.6E-06 1.6E-10 66.4 0.4 35 98-133 115-149 (368)
47 KOG0825 PHD Zn-finger protein 97.7 7.2E-06 1.6E-10 73.9 -0.2 49 99-148 124-172 (1134)
48 KOG4172 Predicted E3 ubiquitin 97.7 8.4E-06 1.8E-10 49.7 -0.1 47 98-148 7-55 (62)
49 KOG1941 Acetylcholine receptor 97.6 2.9E-05 6.4E-10 65.2 1.4 58 98-156 365-425 (518)
50 KOG1785 Tyrosine kinase negati 97.4 5E-05 1.1E-09 64.0 0.9 43 100-146 371-415 (563)
51 KOG0801 Predicted E3 ubiquitin 97.3 8.3E-05 1.8E-09 55.4 0.5 28 98-126 177-204 (205)
52 KOG0824 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 59.2 1.8 47 98-148 7-54 (324)
53 KOG1952 Transcription factor N 97.2 0.00026 5.6E-09 64.6 2.8 52 96-147 189-247 (950)
54 KOG1428 Inhibitor of type V ad 97.1 0.00025 5.4E-09 68.0 2.6 53 96-149 3484-3546(3738)
55 PF11789 zf-Nse: Zinc-finger o 97.1 0.00038 8.2E-09 43.4 2.4 41 98-141 11-53 (57)
56 KOG4159 Predicted E3 ubiquitin 97.1 0.00028 6.1E-09 60.2 2.4 49 96-148 82-130 (398)
57 KOG0297 TNF receptor-associate 97.0 0.00031 6.8E-09 60.1 2.0 48 97-147 20-67 (391)
58 PF05883 Baculo_RING: Baculovi 96.9 0.00042 9E-09 50.3 1.3 38 98-136 26-69 (134)
59 KOG0978 E3 ubiquitin ligase in 96.9 0.00029 6.4E-09 63.6 0.5 45 98-146 643-688 (698)
60 KOG3970 Predicted E3 ubiquitin 96.8 0.00092 2E-08 52.5 2.9 47 98-146 50-104 (299)
61 KOG1814 Predicted E3 ubiquitin 96.8 0.00057 1.2E-08 57.9 1.7 46 98-144 184-237 (445)
62 KOG0826 Predicted E3 ubiquitin 96.7 0.0052 1.1E-07 50.8 6.2 45 97-144 299-343 (357)
63 COG5152 Uncharacterized conser 96.5 0.00097 2.1E-08 51.4 0.8 43 100-146 198-240 (259)
64 PF12906 RINGv: RING-variant d 96.4 0.0021 4.5E-08 38.4 2.0 40 101-142 1-47 (47)
65 PHA02862 5L protein; Provision 96.4 0.0019 4E-08 47.4 1.9 48 98-150 2-56 (156)
66 KOG2660 Locus-specific chromos 96.4 0.00067 1.4E-08 55.9 -0.5 50 97-149 14-63 (331)
67 PF10367 Vps39_2: Vacuolar sor 96.3 0.0014 3.1E-08 45.3 1.0 32 97-130 77-108 (109)
68 COG5236 Uncharacterized conser 96.3 0.0043 9.4E-08 51.7 3.8 49 96-148 59-109 (493)
69 KOG4692 Predicted E3 ubiquitin 96.1 0.0038 8.2E-08 52.2 2.6 48 96-147 420-467 (489)
70 KOG2114 Vacuolar assembly/sort 96.1 0.0022 4.8E-08 58.8 1.3 59 82-146 824-882 (933)
71 KOG1571 Predicted E3 ubiquitin 96.1 0.0028 6E-08 53.0 1.7 45 97-148 304-348 (355)
72 PHA02825 LAP/PHD finger-like p 96.1 0.0049 1.1E-07 46.0 2.8 48 97-148 7-60 (162)
73 PHA03096 p28-like protein; Pro 96.1 0.0027 5.8E-08 52.0 1.5 46 99-144 179-231 (284)
74 KOG3268 Predicted E3 ubiquitin 96.0 0.0041 8.9E-08 47.2 2.1 33 119-151 189-232 (234)
75 KOG1002 Nucleotide excision re 96.0 0.0025 5.4E-08 55.8 0.8 49 96-148 534-587 (791)
76 KOG1813 Predicted E3 ubiquitin 95.9 0.0026 5.7E-08 51.8 0.6 44 100-147 243-286 (313)
77 KOG0827 Predicted E3 ubiquitin 95.8 0.00053 1.2E-08 57.7 -3.7 48 99-147 197-245 (465)
78 PF08746 zf-RING-like: RING-li 95.8 0.0046 9.9E-08 36.2 1.2 41 101-142 1-43 (43)
79 KOG4739 Uncharacterized protei 95.7 0.0031 6.8E-08 50.0 0.3 44 100-147 5-48 (233)
80 KOG2879 Predicted E3 ubiquitin 95.6 0.012 2.7E-07 47.5 3.3 49 96-147 237-287 (298)
81 PF14570 zf-RING_4: RING/Ubox 95.6 0.01 2.2E-07 35.5 2.1 45 101-146 1-47 (48)
82 KOG4275 Predicted E3 ubiquitin 95.4 0.0023 5E-08 52.1 -1.5 44 98-148 300-343 (350)
83 KOG3039 Uncharacterized conser 95.4 0.015 3.2E-07 46.4 2.9 47 100-146 223-269 (303)
84 KOG4185 Predicted E3 ubiquitin 95.2 0.012 2.7E-07 48.2 2.3 47 99-146 4-54 (296)
85 COG5222 Uncharacterized conser 94.7 0.017 3.6E-07 47.4 1.7 45 99-146 275-321 (427)
86 KOG0309 Conserved WD40 repeat- 94.7 0.019 4.1E-07 52.4 2.1 39 101-141 1031-1069(1081)
87 PF14446 Prok-RING_1: Prokaryo 94.5 0.041 8.8E-07 33.7 2.7 34 98-131 5-38 (54)
88 KOG3002 Zn finger protein [Gen 94.3 0.024 5.2E-07 46.9 1.7 43 98-148 48-92 (299)
89 KOG1940 Zn-finger protein [Gen 94.2 0.021 4.6E-07 46.5 1.3 45 99-144 159-204 (276)
90 PF10272 Tmpp129: Putative tra 93.8 0.11 2.3E-06 44.0 4.6 27 120-146 311-350 (358)
91 PF04641 Rtf2: Rtf2 RING-finge 93.7 0.088 1.9E-06 42.6 4.0 50 97-147 112-161 (260)
92 KOG1001 Helicase-like transcri 93.1 0.035 7.6E-07 50.7 0.9 44 99-147 455-500 (674)
93 COG5175 MOT2 Transcriptional r 93.1 0.067 1.5E-06 44.7 2.3 49 97-146 13-63 (480)
94 KOG2034 Vacuolar sorting prote 92.7 0.061 1.3E-06 49.9 1.8 36 96-133 815-850 (911)
95 KOG0298 DEAD box-containing he 92.6 0.036 7.8E-07 53.2 0.1 44 99-145 1154-1197(1394)
96 PF14447 Prok-RING_4: Prokaryo 92.5 0.068 1.5E-06 32.8 1.3 43 100-148 9-51 (55)
97 PF01102 Glycophorin_A: Glycop 91.9 0.43 9.4E-06 34.3 4.9 28 11-38 60-87 (122)
98 PF02439 Adeno_E3_CR2: Adenovi 91.0 0.68 1.5E-05 26.2 4.1 29 18-47 6-34 (38)
99 KOG1100 Predicted E3 ubiquitin 90.8 0.11 2.4E-06 40.7 1.1 39 101-147 161-200 (207)
100 KOG3053 Uncharacterized conser 90.7 0.1 2.2E-06 41.9 0.8 55 97-152 19-87 (293)
101 PF08374 Protocadherin: Protoc 90.6 0.15 3.2E-06 40.0 1.6 10 2-11 23-32 (221)
102 PF05290 Baculo_IE-1: Baculovi 90.4 0.32 6.9E-06 35.4 3.0 48 97-147 79-132 (140)
103 KOG2932 E3 ubiquitin ligase in 90.2 0.085 1.8E-06 43.5 -0.0 45 100-149 92-136 (389)
104 PF07800 DUF1644: Protein of u 88.3 0.72 1.6E-05 34.5 3.7 33 98-133 2-46 (162)
105 PF03854 zf-P11: P-11 zinc fin 88.3 0.15 3.3E-06 30.3 0.1 30 120-149 18-48 (50)
106 KOG2817 Predicted E3 ubiquitin 88.2 0.41 8.9E-06 40.7 2.7 45 97-142 333-380 (394)
107 KOG1812 Predicted E3 ubiquitin 87.9 0.21 4.5E-06 42.8 0.8 38 97-135 145-183 (384)
108 PF06024 DUF912: Nucleopolyhed 87.5 0.55 1.2E-05 32.5 2.6 24 17-40 61-84 (101)
109 KOG3899 Uncharacterized conser 86.0 0.36 7.7E-06 39.7 1.1 27 120-146 325-364 (381)
110 COG5220 TFB3 Cdk activating ki 85.7 0.3 6.5E-06 39.0 0.5 50 97-146 9-63 (314)
111 KOG0269 WD40 repeat-containing 85.7 0.82 1.8E-05 42.1 3.3 44 100-145 781-826 (839)
112 KOG1609 Protein involved in mR 85.7 0.42 9E-06 39.2 1.4 50 98-148 78-135 (323)
113 KOG4362 Transcriptional regula 84.6 0.23 5.1E-06 45.2 -0.6 50 98-151 21-73 (684)
114 PF07975 C1_4: TFIIH C1-like d 84.0 0.83 1.8E-05 27.7 1.8 43 101-143 2-50 (51)
115 KOG3800 Predicted E3 ubiquitin 82.2 1.2 2.7E-05 36.5 2.7 46 100-146 2-50 (300)
116 KOG2807 RNA polymerase II tran 82.0 1.4 3.1E-05 36.7 3.0 66 78-144 306-375 (378)
117 PF10571 UPF0547: Uncharacteri 81.4 0.85 1.8E-05 23.6 1.0 23 100-124 2-24 (26)
118 KOG4367 Predicted Zn-finger pr 80.5 0.74 1.6E-05 39.9 0.9 33 97-133 3-35 (699)
119 PF05568 ASFV_J13L: African sw 80.2 3.7 7.9E-05 30.4 4.3 28 23-50 33-60 (189)
120 KOG0802 E3 ubiquitin ligase [P 80.0 1.4 2.9E-05 39.5 2.4 43 96-146 477-519 (543)
121 PF01102 Glycophorin_A: Glycop 79.6 1.9 4.1E-05 31.0 2.6 28 20-47 65-92 (122)
122 PF11023 DUF2614: Protein of u 79.1 10 0.00022 26.8 6.0 19 133-151 82-100 (114)
123 PF07204 Orthoreo_P10: Orthore 79.1 1.7 3.6E-05 29.7 2.1 41 7-47 29-69 (98)
124 KOG2066 Vacuolar assembly/sort 77.9 0.88 1.9E-05 42.1 0.6 43 98-142 784-830 (846)
125 PF13901 DUF4206: Domain of un 77.7 1.8 4E-05 33.7 2.3 42 96-143 150-196 (202)
126 KOG1815 Predicted E3 ubiquitin 77.6 1.2 2.7E-05 38.7 1.4 37 96-135 68-104 (444)
127 KOG3005 GIY-YIG type nuclease 76.9 1.5 3.3E-05 35.6 1.6 48 99-146 183-242 (276)
128 smart00249 PHD PHD zinc finger 76.9 1.7 3.8E-05 24.4 1.5 31 100-131 1-31 (47)
129 KOG4718 Non-SMC (structural ma 75.7 1.6 3.5E-05 34.2 1.4 44 99-145 182-225 (235)
130 TIGR00622 ssl1 transcription f 75.3 4.1 8.8E-05 28.8 3.2 46 98-143 55-110 (112)
131 PF05393 Hum_adeno_E3A: Human 75.1 3.3 7.2E-05 27.9 2.6 12 39-50 52-63 (94)
132 smart00132 LIM Zinc-binding do 74.3 3.5 7.6E-05 22.2 2.3 36 101-146 2-37 (39)
133 PF01708 Gemini_mov: Geminivir 73.5 4.6 9.9E-05 27.3 3.0 37 6-42 26-62 (91)
134 PHA02844 putative transmembran 73.5 14 0.00029 24.1 5.0 9 30-38 60-68 (75)
135 KOG3161 Predicted E3 ubiquitin 73.3 1.2 2.6E-05 40.5 0.2 42 99-144 12-54 (861)
136 KOG0825 PHD Zn-finger protein 72.3 1.8 3.8E-05 40.3 1.1 54 98-151 96-158 (1134)
137 PF06024 DUF912: Nucleopolyhed 72.0 2.1 4.6E-05 29.6 1.2 29 12-40 59-87 (101)
138 KOG1829 Uncharacterized conser 71.5 1.3 2.7E-05 40.0 -0.1 44 97-144 510-558 (580)
139 COG5183 SSM4 Protein involved 70.1 3.1 6.7E-05 38.9 2.1 48 97-146 11-65 (1175)
140 PF10577 UPF0560: Uncharacteri 69.8 10 0.00022 35.5 5.3 27 20-46 274-301 (807)
141 PF15050 SCIMP: SCIMP protein 67.6 10 0.00023 27.1 3.9 22 18-39 10-32 (133)
142 PRK13454 F0F1 ATP synthase sub 67.1 11 0.00023 28.8 4.2 14 3-16 16-29 (181)
143 PF02891 zf-MIZ: MIZ/SP-RING z 66.8 7.7 0.00017 23.1 2.7 40 100-145 4-50 (50)
144 PF13719 zinc_ribbon_5: zinc-r 66.6 3.7 8.1E-05 22.9 1.3 26 100-125 4-36 (37)
145 PF07123 PsbW: Photosystem II 66.0 11 0.00024 27.6 3.8 26 1-26 90-115 (138)
146 PF00412 LIM: LIM domain; Int 65.8 4.6 9.9E-05 24.2 1.7 38 101-148 1-38 (58)
147 PLN02189 cellulose synthase 65.5 8.9 0.00019 36.9 4.2 52 97-148 33-88 (1040)
148 PF01363 FYVE: FYVE zinc finge 64.7 2.5 5.3E-05 26.7 0.3 36 97-132 8-43 (69)
149 PF06667 PspB: Phage shock pro 64.2 16 0.00035 23.9 4.1 9 37-45 22-30 (75)
150 PLN00082 photosystem II reacti 63.6 12 0.00026 23.7 3.2 25 1-25 18-42 (67)
151 KOG3842 Adaptor protein Pellin 62.6 7.8 0.00017 32.4 2.9 49 98-147 341-414 (429)
152 PHA02819 hypothetical protein; 62.5 30 0.00066 22.3 4.9 12 27-38 55-66 (71)
153 PF06906 DUF1272: Protein of u 62.5 14 0.0003 22.8 3.3 47 100-150 7-55 (57)
154 COG5109 Uncharacterized conser 61.7 52 0.0011 27.7 7.4 44 98-142 336-382 (396)
155 cd00065 FYVE FYVE domain; Zinc 61.6 7.2 0.00016 23.4 2.0 36 98-133 2-37 (57)
156 PF06679 DUF1180: Protein of u 61.3 21 0.00046 26.9 4.8 26 17-42 93-118 (163)
157 PF14979 TMEM52: Transmembrane 60.8 26 0.00057 26.0 5.0 35 12-46 14-50 (154)
158 PF13260 DUF4051: Protein of u 60.5 18 0.00038 21.6 3.3 20 26-45 10-29 (54)
159 PF00628 PHD: PHD-finger; Int 60.2 4.1 8.9E-05 23.9 0.7 44 100-144 1-50 (51)
160 PLN00077 photosystem II reacti 59.8 15 0.00032 26.2 3.4 25 1-25 79-103 (128)
161 TIGR02976 phageshock_pspB phag 59.7 22 0.00048 23.3 4.1 20 29-48 14-33 (75)
162 PF08114 PMP1_2: ATPase proteo 59.1 4.4 9.4E-05 23.3 0.6 13 30-42 22-34 (43)
163 PF13717 zinc_ribbon_4: zinc-r 58.8 5.4 0.00012 22.1 1.0 25 100-125 4-36 (36)
164 PTZ00370 STEVOR; Provisional 58.5 11 0.00024 31.0 3.1 26 22-47 259-284 (296)
165 PF14569 zf-UDP: Zinc-binding 58.3 15 0.00031 24.3 3.0 52 97-148 8-63 (80)
166 PHA03049 IMV membrane protein; 57.9 47 0.001 21.2 5.3 21 20-40 5-25 (68)
167 PLN02436 cellulose synthase A 57.0 16 0.00034 35.5 4.1 51 98-148 36-90 (1094)
168 PRK01844 hypothetical protein; 56.8 29 0.00062 22.5 4.1 24 19-42 6-29 (72)
169 PRK09458 pspB phage shock prot 56.7 25 0.00053 23.0 3.9 23 25-47 10-32 (75)
170 KOG3799 Rab3 effector RIM1 and 56.5 1.6 3.5E-05 31.8 -1.8 45 96-148 63-119 (169)
171 PF06844 DUF1244: Protein of u 56.2 7.6 0.00016 24.8 1.4 12 123-134 11-22 (68)
172 PF09723 Zn-ribbon_8: Zinc rib 56.1 1.9 4.2E-05 24.7 -1.2 28 120-148 11-39 (42)
173 cd00350 rubredoxin_like Rubred 56.0 6.1 0.00013 21.3 0.9 11 135-145 16-26 (33)
174 PF12575 DUF3753: Protein of u 55.9 19 0.0004 23.4 3.2 9 17-25 51-59 (72)
175 PHA02681 ORF089 virion membran 55.7 24 0.00053 23.5 3.7 19 24-42 10-28 (92)
176 PF05961 Chordopox_A13L: Chord 55.7 25 0.00054 22.5 3.6 21 20-40 5-25 (68)
177 PF15179 Myc_target_1: Myc tar 55.5 42 0.00092 25.8 5.5 32 8-39 12-44 (197)
178 PHA02650 hypothetical protein; 55.4 25 0.00054 23.2 3.7 25 14-38 49-73 (81)
179 PF15176 LRR19-TM: Leucine-ric 55.1 15 0.00032 25.4 2.8 24 18-41 17-40 (102)
180 KOG3579 Predicted E3 ubiquitin 55.1 5.7 0.00012 32.7 0.9 38 99-136 269-306 (352)
181 PF07282 OrfB_Zn_ribbon: Putat 54.8 32 0.0007 21.4 4.3 46 86-132 17-64 (69)
182 PF14311 DUF4379: Domain of un 54.8 7.3 0.00016 23.5 1.2 22 120-142 34-55 (55)
183 COG4357 Zinc finger domain con 54.7 12 0.00025 25.8 2.2 33 120-153 65-97 (105)
184 PLN00092 photosystem I reactio 53.8 15 0.00033 26.4 2.8 26 1-26 89-114 (137)
185 PHA02844 putative transmembran 53.5 20 0.00043 23.4 3.0 22 14-35 48-69 (75)
186 PF04277 OAD_gamma: Oxaloaceta 53.5 48 0.001 21.3 5.0 25 17-41 8-32 (79)
187 KOG3113 Uncharacterized conser 53.4 13 0.00029 30.1 2.7 45 100-146 113-157 (293)
188 PF07010 Endomucin: Endomucin; 53.4 49 0.0011 26.5 5.7 9 31-39 204-212 (259)
189 PF10717 ODV-E18: Occlusion-de 53.2 39 0.00085 22.5 4.4 11 11-21 19-29 (85)
190 PLN02638 cellulose synthase A 52.6 15 0.00032 35.7 3.3 50 98-148 17-71 (1079)
191 PHA03099 epidermal growth fact 52.5 19 0.0004 26.2 3.0 17 22-38 107-123 (139)
192 smart00064 FYVE Protein presen 52.3 15 0.00032 22.9 2.3 36 98-133 10-45 (68)
193 PF03911 Sec61_beta: Sec61beta 51.4 21 0.00046 20.4 2.7 27 7-33 11-37 (41)
194 KOG1812 Predicted E3 ubiquitin 51.2 7.9 0.00017 33.2 1.2 44 99-142 307-351 (384)
195 PF07649 C1_3: C1-like domain; 51.2 14 0.0003 19.3 1.8 29 100-129 2-30 (30)
196 KOG2068 MOT2 transcription fac 50.8 25 0.00053 29.5 4.0 51 99-150 250-301 (327)
197 PLN02400 cellulose synthase 50.0 20 0.00043 34.8 3.7 51 97-148 35-90 (1085)
198 PRK00523 hypothetical protein; 49.9 38 0.00082 22.0 3.9 24 19-42 7-30 (72)
199 PRK00665 petG cytochrome b6-f 48.4 32 0.00069 19.2 2.9 24 22-45 7-30 (37)
200 KOG1729 FYVE finger containing 48.0 3.3 7.2E-05 34.1 -1.5 37 100-137 216-252 (288)
201 PF03229 Alpha_GJ: Alphavirus 47.9 34 0.00073 24.4 3.7 16 30-45 99-114 (126)
202 CHL00008 petG cytochrome b6/f 47.9 31 0.00068 19.2 2.8 24 22-45 7-30 (37)
203 PF14316 DUF4381: Domain of un 47.8 20 0.00043 26.2 2.8 12 32-43 36-47 (146)
204 PF07213 DAP10: DAP10 membrane 47.0 53 0.0012 21.7 4.3 28 17-44 32-59 (79)
205 PRK13460 F0F1 ATP synthase sub 47.0 52 0.0011 24.7 5.0 12 5-16 5-16 (173)
206 PRK09174 F0F1 ATP synthase sub 45.9 45 0.00098 26.0 4.6 7 9-15 44-50 (204)
207 PF09451 ATG27: Autophagy-rela 45.9 37 0.0008 27.5 4.3 7 32-38 215-221 (268)
208 PHA03054 IMV membrane protein; 44.9 36 0.00078 21.9 3.2 22 13-34 47-68 (72)
209 PF11174 DUF2970: Protein of u 44.7 51 0.0011 20.2 3.8 27 13-39 27-53 (56)
210 KOG3039 Uncharacterized conser 44.4 14 0.0003 29.9 1.5 33 98-134 43-75 (303)
211 PF04710 Pellino: Pellino; In 44.4 7.4 0.00016 33.4 0.0 49 98-147 328-401 (416)
212 PRK14762 membrane protein; Pro 44.3 45 0.00098 17.0 3.2 17 18-34 6-22 (27)
213 PF14169 YdjO: Cold-inducible 44.1 12 0.00026 23.3 0.9 13 136-148 39-51 (59)
214 PF15145 DUF4577: Domain of un 44.0 55 0.0012 23.2 4.2 24 14-37 60-83 (128)
215 PF04423 Rad50_zn_hook: Rad50 43.7 7.5 0.00016 23.4 -0.1 10 138-147 22-31 (54)
216 PHA02902 putative IMV membrane 43.3 85 0.0018 19.9 5.3 9 33-41 19-27 (70)
217 COG3763 Uncharacterized protei 42.9 63 0.0014 20.9 4.1 21 21-41 8-28 (71)
218 PF14851 FAM176: FAM176 family 42.8 71 0.0015 23.9 5.0 25 16-40 22-46 (153)
219 PHA02819 hypothetical protein; 42.7 41 0.00088 21.7 3.2 24 12-35 44-67 (71)
220 PF15183 MRAP: Melanocortin-2 42.6 33 0.00071 23.0 2.8 23 17-39 38-60 (90)
221 PF15069 FAM163: FAM163 family 42.2 63 0.0014 23.8 4.5 17 30-46 22-38 (143)
222 PF14654 Epiglycanin_C: Mucin, 41.7 83 0.0018 21.7 4.7 27 14-40 18-44 (106)
223 KOG2979 Protein involved in DN 41.4 17 0.00036 29.5 1.6 44 99-145 177-222 (262)
224 KOG0824 Predicted E3 ubiquitin 41.2 9.7 0.00021 31.6 0.2 50 96-148 103-152 (324)
225 PF11359 gpUL132: Glycoprotein 41.2 34 0.00074 27.0 3.2 33 15-47 52-84 (235)
226 COG3125 CyoD Heme/copper-type 41.2 69 0.0015 22.6 4.5 30 10-39 74-103 (111)
227 PLN02195 cellulose synthase A 41.1 33 0.00071 33.1 3.6 49 98-147 6-59 (977)
228 PF04478 Mid2: Mid2 like cell 41.0 3.7 8E-05 30.6 -2.0 8 40-47 72-79 (154)
229 PF02529 PetG: Cytochrome B6-F 40.9 62 0.0013 18.1 3.3 20 23-42 8-27 (37)
230 PRK05978 hypothetical protein; 40.8 19 0.0004 26.8 1.6 26 121-151 42-67 (148)
231 PF12191 stn_TNFRSF12A: Tumour 40.6 10 0.00022 27.4 0.2 20 14-33 75-94 (129)
232 PLN02915 cellulose synthase A 40.4 29 0.00063 33.7 3.2 52 97-148 14-69 (1044)
233 PF12297 EVC2_like: Ellis van 40.4 68 0.0015 27.9 5.1 23 19-41 69-91 (429)
234 PF06143 Baculo_11_kDa: Baculo 39.9 64 0.0014 21.6 3.9 8 19-26 38-45 (84)
235 PF11980 DUF3481: Domain of un 39.7 34 0.00075 22.9 2.6 34 14-47 12-45 (87)
236 PF04216 FdhE: Protein involve 39.6 3.1 6.8E-05 34.1 -2.9 46 98-144 172-219 (290)
237 PF15145 DUF4577: Domain of un 39.4 26 0.00056 24.8 2.1 25 14-38 63-87 (128)
238 PRK09040 hypothetical protein; 39.3 49 0.0011 25.9 3.9 21 11-31 15-35 (214)
239 PF13832 zf-HC5HC2H_2: PHD-zin 38.8 26 0.00056 24.0 2.1 32 97-131 54-87 (110)
240 PF12877 DUF3827: Domain of un 37.9 19 0.00041 33.0 1.5 23 22-44 273-296 (684)
241 PF15018 InaF-motif: TRP-inter 37.9 46 0.00099 18.8 2.5 23 16-38 9-31 (38)
242 PF05568 ASFV_J13L: African sw 37.6 37 0.00081 25.2 2.8 23 18-40 32-54 (189)
243 PF10812 DUF2561: Protein of u 37.5 1.9E+02 0.0041 22.7 6.7 23 16-38 64-86 (207)
244 PRK03564 formate dehydrogenase 37.5 21 0.00045 29.8 1.6 47 97-144 186-234 (309)
245 PHA03164 hypothetical protein; 37.4 40 0.00087 22.1 2.6 13 27-39 68-80 (88)
246 KOG2231 Predicted E3 ubiquitin 37.3 47 0.001 30.7 3.9 48 100-151 2-56 (669)
247 COG5627 MMS21 DNA repair prote 37.2 18 0.00039 29.0 1.1 41 98-141 189-231 (275)
248 PF04906 Tweety: Tweety; Inte 37.0 63 0.0014 27.9 4.6 11 37-47 41-51 (406)
249 COG1622 CyoA Heme/copper-type 36.9 37 0.0008 27.4 2.9 13 126-138 213-225 (247)
250 PF09451 ATG27: Autophagy-rela 36.4 61 0.0013 26.2 4.2 28 11-38 197-224 (268)
251 PHA03164 hypothetical protein; 36.4 62 0.0014 21.2 3.3 24 16-39 60-83 (88)
252 KOG4185 Predicted E3 ubiquitin 36.3 5.6 0.00012 32.5 -1.9 47 99-145 208-265 (296)
253 PRK04778 septation ring format 36.1 34 0.00074 30.8 2.9 12 20-31 5-16 (569)
254 PF06305 DUF1049: Protein of u 36.1 47 0.001 20.5 2.8 17 16-32 20-36 (68)
255 PHA03099 epidermal growth fact 35.4 72 0.0016 23.2 3.9 35 14-48 96-130 (139)
256 PF05715 zf-piccolo: Piccolo Z 34.9 26 0.00057 21.8 1.4 12 136-147 2-13 (61)
257 PF14991 MLANA: Protein melan- 34.7 6.2 0.00014 27.9 -1.6 7 40-46 45-51 (118)
258 PF03908 Sec20: Sec20; InterP 34.4 54 0.0012 21.9 3.1 11 28-38 79-89 (92)
259 PF00558 Vpu: Vpu protein; In 34.2 63 0.0014 21.5 3.2 13 28-40 19-32 (81)
260 PF07010 Endomucin: Endomucin; 34.0 72 0.0016 25.5 4.0 30 19-48 189-218 (259)
261 PF02009 Rifin_STEVOR: Rifin/s 34.0 42 0.0009 27.9 2.9 7 40-46 277-283 (299)
262 PF02038 ATP1G1_PLM_MAT8: ATP1 33.9 50 0.0011 19.9 2.4 33 11-43 6-39 (50)
263 KOG2041 WD40 repeat protein [G 33.6 36 0.00079 31.9 2.6 45 98-146 1131-1184(1189)
264 KOG2096 WD40 repeat protein [G 33.0 90 0.0019 26.5 4.6 24 17-40 5-28 (420)
265 PF13771 zf-HC5HC2H: PHD-like 32.5 31 0.00066 22.6 1.6 33 98-131 36-68 (90)
266 COG5415 Predicted integral mem 32.3 23 0.0005 27.9 1.0 27 120-146 195-224 (251)
267 PRK11877 psaI photosystem I re 32.2 78 0.0017 17.9 2.9 27 12-38 8-34 (38)
268 PRK14475 F0F1 ATP synthase sub 32.0 1E+02 0.0022 23.0 4.5 9 12-20 5-13 (167)
269 KOG2071 mRNA cleavage and poly 31.8 25 0.00054 31.8 1.3 35 96-132 511-556 (579)
270 PF15048 OSTbeta: Organic solu 31.7 1.4E+02 0.0031 21.5 4.9 11 12-22 33-43 (125)
271 PF02318 FYVE_2: FYVE-type zin 31.7 21 0.00046 25.1 0.7 45 97-144 53-102 (118)
272 TIGR00686 phnA alkylphosphonat 31.5 27 0.00058 24.5 1.1 25 100-124 4-29 (109)
273 PF06679 DUF1180: Protein of u 31.4 1.1E+02 0.0023 23.2 4.4 27 15-41 95-121 (163)
274 PF07406 NICE-3: NICE-3 protei 30.6 37 0.0008 26.2 1.9 8 126-133 126-133 (186)
275 TIGR03068 srtB_sig_NPQTN sorta 30.3 99 0.0021 16.8 3.1 8 20-27 12-19 (33)
276 PF10497 zf-4CXXC_R1: Zinc-fin 30.1 80 0.0017 21.9 3.4 25 121-145 37-70 (105)
277 smart00647 IBR In Between Ring 29.9 15 0.00032 22.3 -0.4 20 113-132 39-58 (64)
278 COG4768 Uncharacterized protei 29.8 98 0.0021 22.6 3.8 21 18-38 4-24 (139)
279 TIGR01562 FdhE formate dehydro 29.4 22 0.00047 29.6 0.5 46 98-144 184-232 (305)
280 PF05605 zf-Di19: Drought indu 28.9 19 0.00042 21.5 0.1 38 98-146 2-41 (54)
281 TIGR03063 srtB_target sortase 28.6 1E+02 0.0022 16.3 3.3 10 16-25 8-17 (29)
282 PF04689 S1FA: DNA binding pro 28.2 34 0.00073 21.7 1.1 26 14-39 10-36 (69)
283 PF02060 ISK_Channel: Slow vol 28.2 1.6E+02 0.0034 21.4 4.6 12 18-29 45-56 (129)
284 PF15013 CCSMST1: CCSMST1 fami 27.8 41 0.00088 22.2 1.5 21 19-39 31-51 (77)
285 PRK11827 hypothetical protein; 27.8 19 0.00042 22.5 -0.1 19 130-148 2-20 (60)
286 PF13179 DUF4006: Family of un 27.7 1.1E+02 0.0024 19.5 3.3 22 18-39 16-37 (66)
287 COG3492 Uncharacterized protei 27.6 29 0.00063 23.6 0.7 13 123-135 42-54 (104)
288 KOG3054 Uncharacterized conser 26.6 74 0.0016 25.8 3.0 12 27-38 10-21 (299)
289 KOG3457 Sec61 protein transloc 26.4 49 0.0011 22.2 1.6 23 9-31 53-75 (88)
290 PF10083 DUF2321: Uncharacteri 26.3 30 0.00065 25.9 0.7 42 102-146 8-49 (158)
291 COG2268 Uncharacterized protei 26.2 66 0.0014 29.1 2.9 9 39-47 33-41 (548)
292 PF12088 DUF3565: Protein of u 25.9 51 0.0011 20.6 1.6 22 110-132 8-29 (61)
293 KOG4218 Nuclear hormone recept 25.7 63 0.0014 27.6 2.5 16 94-109 11-26 (475)
294 KOG4430 Topoisomerase I-bindin 25.7 31 0.00066 31.1 0.8 56 97-152 259-314 (553)
295 PTZ00208 65 kDa invariant surf 25.3 77 0.0017 27.5 3.0 14 19-32 387-400 (436)
296 PF01528 Herpes_glycop: Herpes 25.1 99 0.0021 26.6 3.7 31 14-44 301-331 (374)
297 KOG4021 Mitochondrial ribosoma 25.0 32 0.00069 26.8 0.7 21 126-146 97-118 (239)
298 COG2835 Uncharacterized conser 24.9 31 0.00067 21.6 0.5 11 138-148 10-20 (60)
299 PRK08389 putative monovalent c 24.6 2.3E+02 0.0049 19.8 4.9 25 16-40 72-96 (114)
300 COG3813 Uncharacterized protei 24.2 79 0.0017 20.6 2.3 26 121-148 28-53 (84)
301 PF06750 DiS_P_DiS: Bacterial 24.1 40 0.00086 22.8 0.9 37 98-147 33-69 (92)
302 COG3357 Predicted transcriptio 24.0 35 0.00075 23.2 0.6 24 119-146 63-86 (97)
303 PRK01253 preprotein translocas 23.8 43 0.00094 20.4 1.0 27 8-34 23-49 (54)
304 KOG1244 Predicted transcriptio 23.6 18 0.00039 29.7 -1.0 47 99-146 282-332 (336)
305 PRK10220 hypothetical protein; 23.5 58 0.0013 22.9 1.7 24 100-123 5-29 (111)
306 PF07191 zinc-ribbons_6: zinc- 23.3 4.9 0.00011 26.0 -3.4 41 99-148 2-42 (70)
307 PF10779 XhlA: Haemolysin XhlA 23.2 1.2E+02 0.0027 19.1 3.1 20 18-37 50-69 (71)
308 TIGR01477 RIFIN variant surfac 23.0 1.1E+02 0.0024 26.0 3.6 8 40-47 331-338 (353)
309 PRK01343 zinc-binding protein; 23.0 43 0.00094 20.7 0.9 12 136-147 9-20 (57)
310 PTZ00046 rifin; Provisional 22.9 1.1E+02 0.0024 26.1 3.6 8 40-47 336-343 (358)
311 KOG1245 Chromatin remodeling c 22.6 28 0.00061 35.0 -0.1 49 97-146 1107-1159(1404)
312 KOG3637 Vitronectin receptor, 22.6 98 0.0021 30.3 3.5 27 15-41 976-1002(1030)
313 COG0675 Transposase and inacti 22.4 1E+02 0.0022 24.9 3.2 34 96-132 307-340 (364)
314 PRK14710 hypothetical protein; 22.3 88 0.0019 20.2 2.2 16 12-27 6-21 (86)
315 TIGR03052 PS_I_psaI photosyste 22.2 1.2E+02 0.0026 16.3 2.4 23 15-37 4-26 (31)
316 PRK09702 PTS system arbutin-sp 21.9 1.1E+02 0.0025 22.9 3.1 26 21-46 10-35 (161)
317 CHL00186 psaI photosystem I su 21.7 1.6E+02 0.0035 16.4 3.9 26 13-38 5-30 (36)
318 PRK06287 cobalt transport prot 21.7 2E+02 0.0043 20.0 4.1 21 18-38 78-98 (107)
319 PF02480 Herpes_gE: Alphaherpe 21.7 31 0.00066 30.2 0.0 17 17-33 351-367 (439)
320 smart00734 ZnF_Rad18 Rad18-lik 21.7 40 0.00087 17.1 0.4 9 138-146 3-11 (26)
321 PF07069 PRRSV_2b: Porcine rep 21.6 2E+02 0.0044 18.0 3.6 13 19-31 30-42 (73)
322 PRK13718 conjugal transfer pro 21.4 1.9E+02 0.004 19.2 3.6 8 18-25 44-51 (84)
323 PF03107 C1_2: C1 domain; Int 21.3 55 0.0012 17.0 1.0 28 100-128 2-29 (30)
324 PF15353 HECA: Headcase protei 21.1 57 0.0012 22.8 1.2 14 120-133 40-53 (107)
325 PF11057 Cortexin: Cortexin of 21.0 2.2E+02 0.0047 18.7 3.8 21 18-38 30-50 (81)
326 COG1592 Rubrerythrin [Energy p 21.0 59 0.0013 24.6 1.4 10 136-145 149-158 (166)
327 PF03884 DUF329: Domain of unk 21.0 38 0.00083 20.9 0.3 13 137-149 3-15 (57)
328 KOG1538 Uncharacterized conser 21.0 37 0.0008 31.6 0.3 34 114-147 1044-1077(1081)
329 PF15361 RIC3: Resistance to i 20.9 3.5E+02 0.0076 20.0 5.6 7 32-38 96-102 (152)
330 PF06676 DUF1178: Protein of u 20.9 36 0.00077 25.3 0.2 22 120-146 10-42 (148)
331 KOG4433 Tweety transmembrane/c 20.9 2.4E+02 0.0053 25.2 5.2 15 32-46 60-74 (526)
332 TIGR02605 CxxC_CxxC_SSSS putat 20.8 19 0.00041 21.2 -1.0 13 136-148 26-39 (52)
333 PRK10299 PhoPQ regulatory prot 20.8 1.8E+02 0.0039 17.2 3.1 17 27-43 13-29 (47)
334 cd04718 BAH_plant_2 BAH, or Br 20.7 19 0.00041 26.8 -1.3 23 124-146 2-28 (148)
335 cd07912 Tweety_N N-terminal do 20.6 2E+02 0.0043 25.1 4.7 6 40-45 64-69 (418)
336 PF03119 DNA_ligase_ZBD: NAD-d 20.5 36 0.00078 17.7 0.1 12 138-149 1-12 (28)
337 PTZ00303 phosphatidylinositol 20.4 69 0.0015 30.5 1.9 34 99-132 461-499 (1374)
338 KOG2789 Putative Zn-finger pro 20.3 62 0.0013 28.1 1.5 31 99-131 75-105 (482)
339 smart00531 TFIIE Transcription 20.3 93 0.002 22.7 2.3 13 137-149 124-136 (147)
340 PRK00418 DNA gyrase inhibitor; 20.1 46 0.001 20.9 0.6 11 137-147 7-17 (62)
341 PRK11088 rrmA 23S rRNA methylt 20.0 72 0.0016 25.5 1.8 24 100-124 4-27 (272)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-21 Score=160.60 Aligned_cols=77 Identities=39% Similarity=0.886 Sum_probs=65.6
Q ss_pred CCCCCHHHHHhCCceeeccCCCCC--cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC-CCCccccccccCCCC
Q 040159 75 RIRTSSVMRVLMPVFRFSSKDCNE--DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-SNCPLCRANANAAPP 151 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~CR~~~~~~~~ 151 (176)
...+.+..++++|...|.+.+.++ +.|+||||+|+.+|++|.|| |+|.||..||++||..+ ..||+||+++.+...
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 456678899999999998877322 48999999999999999999 99999999999999876 559999998866444
Q ss_pred C
Q 040159 152 P 152 (176)
Q Consensus 152 ~ 152 (176)
.
T Consensus 283 ~ 283 (348)
T KOG4628|consen 283 S 283 (348)
T ss_pred C
Confidence 3
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.65 E-value=4.8e-17 Score=96.85 Aligned_cols=44 Identities=50% Similarity=1.281 Sum_probs=40.5
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCR 143 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR 143 (176)
++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999 999999999999999999999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.47 E-value=1.4e-14 Score=95.32 Aligned_cols=47 Identities=38% Similarity=0.979 Sum_probs=37.1
Q ss_pred CCCcccccccccccC----------CCeeeEcCCCCCccCHHHHHHHHhcCCCCcccc
Q 040159 96 CNEDTCAVCLGDFKE----------GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCR 143 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~----------~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR 143 (176)
..++.|+||++.|.+ +-.+...+ |||.||..||..|++.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345669999999943 22444555 999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.43 E-value=9.9e-14 Score=109.97 Aligned_cols=73 Identities=23% Similarity=0.621 Sum_probs=56.1
Q ss_pred CCCCCHHHHHhCCceeeccCC----CCCcccccccccccCCC----eeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 75 RIRTSSVMRVLMPVFRFSSKD----CNEDTCAVCLGDFKEGE----QVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----~~~~~C~ICl~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..+..+..++.+|.....-.. ..+.+|+||++.+.++. .+.+++.|+|.||..||..|+..+.+||+||.++
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 345577788888887644322 34679999999987543 2345545999999999999999999999999988
Q ss_pred c
Q 040159 147 N 147 (176)
Q Consensus 147 ~ 147 (176)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 4
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.7e-13 Score=110.25 Aligned_cols=49 Identities=43% Similarity=1.072 Sum_probs=45.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-cCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~ 147 (176)
.-+|+|||++|..+|.++++| |+|.||..|++.|+. -+..||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCC
Confidence 358999999999999999999 999999999999998 5677999999883
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.5e-12 Score=107.44 Aligned_cols=67 Identities=25% Similarity=0.746 Sum_probs=53.2
Q ss_pred CHHHHHhCCceeeccCCCCCccccccccc-ccCC---------CeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 79 SSVMRVLMPVFRFSSKDCNEDTCAVCLGD-FKEG---------EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.+++.+.+++..-....+++..|.||+++ |..+ ..-..|| |||+||-+|+..|++++.+||+||.++
T Consensus 268 ~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 268 TKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 34456666666665556788899999999 4433 1346788 999999999999999999999999995
No 7
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.17 E-value=2e-11 Score=81.54 Aligned_cols=57 Identities=35% Similarity=0.793 Sum_probs=42.6
Q ss_pred eccCCCCCcccccccccccC--------CC-eeeEcCCCCCccCHHHHHHHHhc---CCCCcccccccc
Q 040159 91 FSSKDCNEDTCAVCLGDFKE--------GE-QVRVLPECLHLFHVPCIDMWLSS---HSNCPLCRANAN 147 (176)
Q Consensus 91 ~~~~~~~~~~C~ICl~~~~~--------~~-~~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~CR~~~~ 147 (176)
+..+..+++.|.||...|+. ++ .-.++..|+|.||..||.+|+.. +..||+||++..
T Consensus 14 W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 14 WKWDVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred EEEecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 33333568899999999973 22 22344459999999999999975 457999999873
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.14 E-value=1.7e-11 Score=74.72 Aligned_cols=46 Identities=33% Similarity=0.895 Sum_probs=39.3
Q ss_pred CcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
+..|.||++... .+..+| |||. |+..|+..|+..+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 568999999865 368888 9999 999999999999999999999985
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.14 E-value=4.8e-11 Score=69.98 Aligned_cols=44 Identities=50% Similarity=1.172 Sum_probs=37.4
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~ 146 (176)
+|+||++.+ .+.+...+ |+|.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34566676 9999999999999987 77799998764
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.09 E-value=6.8e-11 Score=68.34 Aligned_cols=39 Identities=38% Similarity=1.076 Sum_probs=33.3
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLC 142 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C 142 (176)
|+||++.+.+ .+..++ |||.|+..|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999874 566787 99999999999999998899998
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.07 E-value=1.1e-10 Score=89.39 Aligned_cols=48 Identities=31% Similarity=0.868 Sum_probs=39.4
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----------------CCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----------------HSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----------------~~~CP~CR~~~~~ 148 (176)
++.+|+||++.++++ .+++ |||.||..||..|+.. ...||+||.++..
T Consensus 17 ~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 456899999998765 5567 9999999999999852 2469999998843
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.8e-10 Score=85.44 Aligned_cols=47 Identities=34% Similarity=0.766 Sum_probs=40.2
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+|||+.|+ +++.+..+|||+||+.||..-++....||+|++.++
T Consensus 132 ~~CPiCl~~~s--ek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 132 YKCPICLDSVS--EKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cCCCceecchh--hccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 47999999998 444454459999999999999999999999998773
No 13
>PHA02926 zinc finger-like protein; Provisional
Probab=99.01 E-value=2.1e-10 Score=89.10 Aligned_cols=54 Identities=28% Similarity=0.795 Sum_probs=40.9
Q ss_pred CCCcccccccccccCC-----CeeeEcCCCCCccCHHHHHHHHhcC------CCCccccccccCC
Q 040159 96 CNEDTCAVCLGDFKEG-----EQVRVLPECLHLFHVPCIDMWLSSH------SNCPLCRANANAA 149 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~-----~~~~~l~~C~H~fH~~Ci~~wl~~~------~~CP~CR~~~~~~ 149 (176)
..+.+|+||++..-++ ....+|+.|+|.||..||..|...+ .+||+||......
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 4567999999986322 1334666799999999999999753 3599999987543
No 14
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.00 E-value=1.6e-10 Score=75.54 Aligned_cols=49 Identities=37% Similarity=0.668 Sum_probs=40.2
Q ss_pred CcccccccccccC------------CCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 98 EDTCAVCLGDFKE------------GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~------------~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
-+.|+||...|.. ++.......|+|.||..||..||..+..||++|++.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 4678888888753 234445557999999999999999999999999977
No 15
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.2e-11 Score=93.81 Aligned_cols=50 Identities=30% Similarity=0.737 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCC-------eeeEcCCCCCccCHHHHHHHH--hcCCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGE-------QVRVLPECLHLFHVPCIDMWL--SSHSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~-------~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~CR~~~ 146 (176)
.++..|+||-..+.... .+-.|. |+|+||..||.-|- .++.+||+|+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHh
Confidence 56789999999987655 677888 99999999999995 5678999998866
No 16
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4e-10 Score=90.45 Aligned_cols=48 Identities=33% Similarity=0.800 Sum_probs=42.6
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.....|.+||+.-+++ -.+| |||+||-.||..|...+..||+||....
T Consensus 237 ~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCC
Confidence 3456899999998766 6788 9999999999999999999999999883
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.94 E-value=6.4e-10 Score=65.94 Aligned_cols=44 Identities=27% Similarity=0.821 Sum_probs=38.3
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
.|.||++.|.+.....+++ |||.|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666788888 9999999999999966778999984
No 18
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.7e-10 Score=99.95 Aligned_cols=50 Identities=32% Similarity=0.959 Sum_probs=44.6
Q ss_pred CCCcccccccccccCCCe--eeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQ--VRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~--~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..++.|+||++++..++. ...++ |+|+||..|+..|+++.++||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhh
Confidence 457799999999998654 68888 999999999999999999999999944
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.88 E-value=1.4e-09 Score=63.31 Aligned_cols=39 Identities=44% Similarity=1.129 Sum_probs=33.4
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHh--cCCCCccc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS--SHSNCPLC 142 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~--~~~~CP~C 142 (176)
|+||++.+... ...++ |||.|+..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998754 36787 999999999999998 45569988
No 20
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.8e-10 Score=76.79 Aligned_cols=51 Identities=31% Similarity=0.651 Sum_probs=42.3
Q ss_pred CCCcccccccccccC-------------CCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKE-------------GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~-------------~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
-.-+.|+||...+.+ ++.......|+|.||..||.+||+.+..||+|.++.
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 556789999877632 456666778999999999999999999999998766
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.87 E-value=1.1e-09 Score=64.25 Aligned_cols=38 Identities=37% Similarity=0.881 Sum_probs=29.6
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC----CCCccc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH----SNCPLC 142 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~----~~CP~C 142 (176)
|+||++.|.++ ..++ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999977 7787 99999999999999753 359987
No 22
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.8e-09 Score=84.27 Aligned_cols=47 Identities=38% Similarity=0.882 Sum_probs=37.5
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC---CCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH---SNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~CR~~~~ 147 (176)
...+|.|||+.-+++ |..+ |||.||-.||.+||..+ +.||+||+.+.
T Consensus 46 ~~FdCNICLd~akdP--VvTl--CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDP--VVTL--CGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CceeeeeeccccCCC--EEee--cccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 455999999996644 4444 99999999999999753 34999999873
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.82 E-value=3.2e-09 Score=59.96 Aligned_cols=38 Identities=42% Similarity=1.156 Sum_probs=32.3
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHh-cCCCCccc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLC 142 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~C 142 (176)
|+||++.. .....++ |+|.||..|+..|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 4567788 999999999999998 56679987
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.76 E-value=9.3e-09 Score=65.14 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=39.6
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..|+||++.+.++ ..++ |||+|...||..|+..+.+||+|+.++
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 4699999999876 5677 999999999999999888999999887
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.3e-10 Score=72.17 Aligned_cols=51 Identities=37% Similarity=0.879 Sum_probs=39.6
Q ss_pred CCCcccccccccccC--------CC-eeeEcCCCCCccCHHHHHHHHhcCC---CCccccccc
Q 040159 96 CNEDTCAVCLGDFKE--------GE-QVRVLPECLHLFHVPCIDMWLSSHS---NCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~--------~~-~~~~l~~C~H~fH~~Ci~~wl~~~~---~CP~CR~~~ 146 (176)
..++.|.||.-.|.. +| .-.++..|.|.||..||..|+.... .||+||+..
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 566799999999974 22 3334446999999999999997643 499999976
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=1.8e-08 Score=85.52 Aligned_cols=48 Identities=33% Similarity=0.692 Sum_probs=41.8
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
....|+||++.|... .+++ |+|.||..||..|+.....||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456899999999866 4677 99999999999999988889999998754
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.52 E-value=6.7e-08 Score=58.54 Aligned_cols=42 Identities=24% Similarity=0.811 Sum_probs=32.9
Q ss_pred ccccccccccCCCeeeEcCCCC-----CccCHHHHHHHHhc--CCCCcccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECL-----HLFHVPCIDMWLSS--HSNCPLCR 143 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~--~~~CP~CR 143 (176)
.|.||++ ...++...+.| |. |.+|..|+..|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 44445556788 84 89999999999965 44799995
No 28
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.49 E-value=2.1e-08 Score=91.26 Aligned_cols=49 Identities=39% Similarity=0.965 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCCeeeEcC-----CCCCccCHHHHHHHHhc--CCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLP-----ECLHLFHVPCIDMWLSS--HSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~-----~C~H~fH~~Ci~~wl~~--~~~CP~CR~~~ 146 (176)
.+-++|+||...+..-| |.+| .|+|.||..|+..|++. +++||+||..+
T Consensus 1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 56679999999886211 2222 58999999999999975 56799999876
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.6e-07 Score=79.14 Aligned_cols=49 Identities=29% Similarity=0.853 Sum_probs=38.6
Q ss_pred CcccccccccccC---C-----------CeeeEcCCCCCccCHHHHHHHHh-cCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKE---G-----------EQVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~---~-----------~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~ 147 (176)
...|+||+..+.- + ....++| |.|+||..|+.+|.. .+--||+||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 4589999998742 1 1234567 999999999999998 4558999999984
No 30
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.40 E-value=5.4e-08 Score=63.39 Aligned_cols=50 Identities=28% Similarity=0.742 Sum_probs=23.6
Q ss_pred CcccccccccccCCCee--eEc--CCCCCccCHHHHHHHHhc---CC--------CCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQV--RVL--PECLHLFHVPCIDMWLSS---HS--------NCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~--~~l--~~C~H~fH~~Ci~~wl~~---~~--------~CP~CR~~~~ 147 (176)
+.+|.||++.+.+++.+ .+- +.|++.||..|+..||.. .. .||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999987633222 222 258999999999999963 11 3999999884
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.7e-08 Score=82.41 Aligned_cols=47 Identities=30% Similarity=0.719 Sum_probs=36.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC-----CCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-----SNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-----~~CP~CR~~~~~ 148 (176)
+..|+|||+..... .+..|||+||..||-+++... ..||+||..+..
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 66899999985433 333499999999999988653 359999998855
No 32
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.6e-07 Score=74.84 Aligned_cols=48 Identities=33% Similarity=0.834 Sum_probs=39.5
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHH-HHhcCCC-CccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDM-WLSSHSN-CPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~-wl~~~~~-CP~CR~~~~~ 148 (176)
.+..|+||++..... ..++ |||+||..||.. |=.++.- ||+||+.+.+
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 466899999986654 6777 999999999999 8776655 9999998843
No 33
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.37 E-value=2.5e-07 Score=54.43 Aligned_cols=34 Identities=32% Similarity=0.724 Sum_probs=21.5
Q ss_pred cccccccccCCC-eeeEcCCCCCccCHHHHHHHHhcC
Q 040159 101 CAVCLGDFKEGE-QVRVLPECLHLFHVPCIDMWLSSH 136 (176)
Q Consensus 101 C~ICl~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~ 136 (176)
|+||.+ |..++ .-.+|+ |||+|+.+|+..++..+
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 86644 447798 99999999999999854
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=6.1e-07 Score=73.60 Aligned_cols=50 Identities=20% Similarity=0.593 Sum_probs=37.6
Q ss_pred Cccccccccc-ccCCC-eeeEcCCCCCccCHHHHHHHHh-cCCCCccccccccC
Q 040159 98 EDTCAVCLGD-FKEGE-QVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~-~~~~~-~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~~ 148 (176)
+..|++|..+ |-.++ .+.+.+ |||.||..|++..+. ....||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4689999995 33333 344445 999999999999664 45679999998844
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.27 E-value=3e-07 Score=75.61 Aligned_cols=45 Identities=31% Similarity=0.772 Sum_probs=41.3
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.|.||.+-|..+ .++| |+|.||.-||..+|..+..||.|+.++..
T Consensus 25 RC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 25 RCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence 699999999877 7788 99999999999999999999999988743
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.21 E-value=6.8e-07 Score=72.17 Aligned_cols=44 Identities=27% Similarity=0.587 Sum_probs=39.3
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..|.||-+-|..+ ..++ |||-||.-||..+|..+..||+||.+.
T Consensus 26 lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 26 LRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccH
Confidence 4799999998766 5666 999999999999999999999999875
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.2e-06 Score=70.30 Aligned_cols=44 Identities=39% Similarity=0.843 Sum_probs=39.0
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
+...|+||++.|..+ .+++ |+|.|+..|+..++.....||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 456899999999988 8888 9999999999999885567999994
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.09 E-value=1.7e-06 Score=56.67 Aligned_cols=47 Identities=21% Similarity=0.414 Sum_probs=36.7
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~~ 148 (176)
...|+|+.+-+.++ .+++ +||.|-..||..|+.. +.+||+|+.++..
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45799999999977 6778 9999999999999998 8889999998844
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=9.2e-07 Score=73.84 Aligned_cols=61 Identities=31% Similarity=0.802 Sum_probs=45.8
Q ss_pred CCcccccccccccCCC----eeeEcCCCCCccCHHHHHHHH--hc-----CCCCccccccccCCCCCC-cccc
Q 040159 97 NEDTCAVCLGDFKEGE----QVRVLPECLHLFHVPCIDMWL--SS-----HSNCPLCRANANAAPPPH-LVLT 157 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~----~~~~l~~C~H~fH~~Ci~~wl--~~-----~~~CP~CR~~~~~~~~~~-~~~~ 157 (176)
.+.+|.||++..-+.. ....+|+|.|.|+..||..|- .+ ...||.||......-+.. |+.+
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t 232 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVET 232 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeee
Confidence 4679999999976543 234567799999999999997 33 467999999887755554 4443
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.6e-06 Score=72.51 Aligned_cols=45 Identities=24% Similarity=0.902 Sum_probs=33.6
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC---CCCcccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH---SNCPLCR 143 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~CR 143 (176)
..|.||-+-+.....+.-...|||+||..|+.+|+..- ..||+||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 47999944443343555444599999999999999863 4699998
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.8e-06 Score=70.44 Aligned_cols=47 Identities=32% Similarity=0.786 Sum_probs=39.6
Q ss_pred CcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
..+|.|||.+-+ .+.+|| |.|. .|..|.+..--.+..||+||+++..
T Consensus 290 gkeCVIClse~r---dt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESR---DTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCc---ceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 458999999865 448999 9998 8999988877778889999999844
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.00 E-value=2.1e-06 Score=72.88 Aligned_cols=46 Identities=35% Similarity=0.876 Sum_probs=36.8
Q ss_pred cccccccccccCCC-eeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGE-QVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.+|+|||+.+.... .++... |.|.||..|+..|. ..+||+||....
T Consensus 176 PTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 38999999987654 344454 99999999999995 468999998663
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=7.4e-06 Score=68.94 Aligned_cols=49 Identities=39% Similarity=0.937 Sum_probs=37.0
Q ss_pred CcccccccccccC-CCeeeEcCCCCCccCHHHHHHHHhc--CCCCccccccc
Q 040159 98 EDTCAVCLGDFKE-GEQVRVLPECLHLFHVPCIDMWLSS--HSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~CR~~~ 146 (176)
..+|+|||++|.. ++...+.+.|||.|..+||+.|+-+ ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 4689999999984 4433444459999999999999953 23499996543
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.81 E-value=3.2e-06 Score=53.49 Aligned_cols=42 Identities=36% Similarity=0.837 Sum_probs=21.0
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.|++|.+-++.+ +.+. .|.|+|+..||..-+. .-||+|+.+.
T Consensus 9 rCs~C~~~l~~p--v~l~-~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKEP--VCLG-GCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred CCcHHHHHhcCC--ceec-cCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 599999998755 3344 5999999999977444 4499998765
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.9e-06 Score=70.14 Aligned_cols=49 Identities=35% Similarity=0.640 Sum_probs=41.0
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCcccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANAN 147 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~ 147 (176)
..+..|+|||+-++.. +..+.|.|-||.+||..-++. ++.||.||+.+.
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 3456899999998855 666679999999999988864 778999999883
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.74 E-value=7.6e-06 Score=66.44 Aligned_cols=35 Identities=29% Similarity=0.743 Sum_probs=32.2
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHH
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL 133 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 133 (176)
...|.|||.-|.+++.+.+++ |-|.||..|+..+|
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYL 149 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHH
Confidence 458999999999999999998 99999999998875
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.71 E-value=7.2e-06 Score=73.87 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=42.2
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
..|++|+..+.++......+ |+|.||..|+..|-+.-.+||+||.....
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 47999999998776666666 99999999999999999999999986643
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=8.4e-06 Score=49.73 Aligned_cols=47 Identities=28% Similarity=0.577 Sum_probs=32.6
Q ss_pred CcccccccccccCCCeeeEcCCCCCc-cCHHHHHH-HHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDM-WLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~-wl~~~~~CP~CR~~~~~ 148 (176)
+++|.||++.-- +.+..+ |||. .+-+|-.+ |-..+..||+||+++..
T Consensus 7 ~dECTICye~pv--dsVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPV--DSVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcc--hHHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 478999999744 333333 9998 55556443 33467889999998854
No 49
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.56 E-value=2.9e-05 Score=65.17 Aligned_cols=58 Identities=31% Similarity=0.700 Sum_probs=43.9
Q ss_pred CcccccccccccC-CCeeeEcCCCCCccCHHHHHHHHhcC--CCCccccccccCCCCCCccc
Q 040159 98 EDTCAVCLGDFKE-GEQVRVLPECLHLFHVPCIDMWLSSH--SNCPLCRANANAAPPPHLVL 156 (176)
Q Consensus 98 ~~~C~ICl~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~CR~~~~~~~~~~~~~ 156 (176)
+..|..|-+.|-- ++.+.-|| |.|+||..|+...|.++ .+||.||+-...+..++-..
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvg 425 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVG 425 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcC
Confidence 4479999999864 45788999 99999999999999765 46999995444344444333
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.40 E-value=5e-05 Score=63.98 Aligned_cols=43 Identities=33% Similarity=0.967 Sum_probs=36.8
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc--CCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS--HSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~CR~~~ 146 (176)
.|-||-+. +..|.+-| |||..|..|+..|-.. ..+||.||..+
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 69999886 34678888 9999999999999843 57899999987
No 51
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=8.3e-05 Score=55.44 Aligned_cols=28 Identities=36% Similarity=1.026 Sum_probs=26.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCH
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHV 126 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~ 126 (176)
..+|.|||++++.++.+..|| |-.+||+
T Consensus 177 kGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred CCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 349999999999999999999 9999996
No 52
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00014 Score=59.16 Aligned_cols=47 Identities=23% Similarity=0.529 Sum_probs=37.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~~ 148 (176)
..+|+||+..---+ ..++ |+|.|+--||.--..+ ..+|++||.++..
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 56899999885544 5666 9999999999887765 4569999999844
No 53
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.17 E-value=0.00026 Score=64.61 Aligned_cols=52 Identities=29% Similarity=0.726 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC-------CCCcccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-------SNCPLCRANAN 147 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-------~~CP~CR~~~~ 147 (176)
....+|.||.+.+...+.+---..|-|+||..||..|.+.. ..||.|+....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 34458999999998766555444589999999999998642 24999985443
No 54
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.15 E-value=0.00025 Score=67.97 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC----------CCccccccccCC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS----------NCPLCRANANAA 149 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~----------~CP~CR~~~~~~ 149 (176)
..++.|.||+.+--.....+.|. |+|+||..|...-|.++. +||+|+.+++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34678999998866566777887 999999999988776532 499999988654
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.12 E-value=0.00038 Score=43.38 Aligned_cols=41 Identities=24% Similarity=0.586 Sum_probs=28.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC--CCCcc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH--SNCPL 141 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~ 141 (176)
...|+|.+..|+ +.++-.. |+|+|-++.|..|+.++ ..||+
T Consensus 11 ~~~CPiT~~~~~--~PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE--DPVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S--SEEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh--CCcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 457999999998 4566665 99999999999999443 35998
No 56
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00028 Score=60.24 Aligned_cols=49 Identities=35% Similarity=0.699 Sum_probs=42.1
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
..+.+|.||+..+... ..+| |||.|+..||++-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 4566999999998866 6678 99999999999987877889999999864
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.04 E-value=0.00031 Score=60.07 Aligned_cols=48 Identities=27% Similarity=0.686 Sum_probs=40.5
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.+..|++|...+.++- .... |||.|+..|+..|+..+..||.|+..+.
T Consensus 20 ~~l~C~~C~~vl~~p~--~~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPV--QTTT-CGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred ccccCccccccccCCC--CCCC-CCCcccccccchhhccCcCCcccccccc
Confidence 4568999999998662 2245 9999999999999999999999988773
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.90 E-value=0.00042 Score=50.32 Aligned_cols=38 Identities=16% Similarity=0.451 Sum_probs=30.7
Q ss_pred CcccccccccccCCCeeeEcCCCC------CccCHHHHHHHHhcC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECL------HLFHVPCIDMWLSSH 136 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~------H~fH~~Ci~~wl~~~ 136 (176)
..+|+||++.+.+.+.+..++ |+ |.||.+|+..|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 568999999999856667676 64 999999999995433
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00029 Score=63.56 Aligned_cols=45 Identities=27% Similarity=0.648 Sum_probs=35.2
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-cCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~ 146 (176)
-..|+.|-..+++- .+.. |+|+||..|+..-+. ++..||.|-++.
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~k-C~H~FC~~Cvq~r~etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITK-CGHVFCEECVQTRYETRQRKCPKCNAAF 688 (698)
T ss_pred ceeCCCccCchhhH---HHHh-cchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 34799999776633 3343 999999999999886 567799998766
No 60
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00092 Score=52.51 Aligned_cols=47 Identities=28% Similarity=0.785 Sum_probs=40.3
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc--------CCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS--------HSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~CR~~~ 146 (176)
...|..|-..+..+|.+|+. |-|+||-+|++.|... ...||.|-.++
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 35799999999999999988 9999999999999754 23499998877
No 61
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00057 Score=57.88 Aligned_cols=46 Identities=22% Similarity=0.610 Sum_probs=38.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC--------CCCccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH--------SNCPLCRA 144 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--------~~CP~CR~ 144 (176)
-..|.||+++..-.+....+| |+|+|++.|...++... -.||-+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 347999999988778999999 99999999999998542 24877754
No 62
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0052 Score=50.80 Aligned_cols=45 Identities=24% Similarity=0.546 Sum_probs=35.4
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
....|++|+..-.++ .+... -|.+||-.|+-.++.+...||+=-.
T Consensus 299 ~~~~CpvClk~r~Np-tvl~v--SGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP-TVLEV--SGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred ccccChhHHhccCCC-ceEEe--cceEEeHHHHHHHHHhcCCCCccCC
Confidence 456899999997755 22222 5999999999999999999997533
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.49 E-value=0.00097 Score=51.43 Aligned_cols=43 Identities=23% Similarity=0.534 Sum_probs=37.3
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.|.||-++|+.+ .+.. |||.||..|...-++....|-+|-+..
T Consensus 198 ~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 198 LCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 799999999977 5555 999999999999999999999996543
No 64
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.45 E-value=0.0021 Score=38.39 Aligned_cols=40 Identities=30% Similarity=0.932 Sum_probs=26.7
Q ss_pred cccccccccCCCeeeEcCCC--C---CccCHHHHHHHHhc--CCCCccc
Q 040159 101 CAVCLGDFKEGEQVRVLPEC--L---HLFHVPCIDMWLSS--HSNCPLC 142 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C--~---H~fH~~Ci~~wl~~--~~~CP~C 142 (176)
|-||++.-.+.+ ..+.| | . -..|.+|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999877655 34556 6 3 36899999999974 5569887
No 65
>PHA02862 5L protein; Provisional
Probab=96.42 E-value=0.0019 Score=47.42 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=35.3
Q ss_pred CcccccccccccCCCeeeEcCCCC-----CccCHHHHHHHHhc--CCCCccccccccCCC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECL-----HLFHVPCIDMWLSS--HSNCPLCRANANAAP 150 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~--~~~CP~CR~~~~~~~ 150 (176)
.+.|-||+++-++. .-| |. ...|.+|+.+|+.. +..||+|+.+....+
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 35799999984322 355 63 56899999999964 456999999875433
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.41 E-value=0.00067 Score=55.95 Aligned_cols=50 Identities=30% Similarity=0.663 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccCC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAA 149 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~ 149 (176)
...+|.+|-.-|-+.. -+. .|-|-||+.||..++....+||.|...+...
T Consensus 14 ~~itC~LC~GYliDAT--TI~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDAT--TIT-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecch--hHH-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4568999998887542 233 4999999999999999999999998877544
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.35 E-value=0.0014 Score=45.32 Aligned_cols=32 Identities=31% Similarity=0.733 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCID 130 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~ 130 (176)
.+..|++|-..+.. ....+.| |||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 46689999999976 4777888 99999999974
No 68
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.34 E-value=0.0043 Score=51.72 Aligned_cols=49 Identities=29% Similarity=0.615 Sum_probs=38.2
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHH--HhcCCCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW--LSSHSNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w--l~~~~~CP~CR~~~~~ 148 (176)
.+...|.||-+.+. ...++| |+|..|..|--.- |..++.||+||.....
T Consensus 59 Een~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 44458999988764 558899 9999999997543 5678889999987644
No 69
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0038 Score=52.19 Aligned_cols=48 Identities=21% Similarity=0.540 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.+++.|+||... +..-...| |+|.=|..||.+.+.+.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 567799999876 33446778 9999999999999999999999998874
No 70
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.0022 Score=58.76 Aligned_cols=59 Identities=25% Similarity=0.577 Sum_probs=41.3
Q ss_pred HHHhCCceeeccCCCCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 82 MRVLMPVFRFSSKDCNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
+.+.+...+.++.......|..|-..++-+ -|..+ |||.||.+|.. .+...||-|+..+
T Consensus 824 ~r~~l~~lr~sa~i~q~skCs~C~~~LdlP-~VhF~--CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 824 KRQELETLRTSAQIFQVSKCSACEGTLDLP-FVHFL--CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHhhcccceeeeeeecccCCccccc-eeeee--cccHHHHHhhc---cCcccCCccchhh
Confidence 444444455554444556899999888755 44444 99999999998 4445699998744
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0028 Score=52.95 Aligned_cols=45 Identities=31% Similarity=0.680 Sum_probs=33.4
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
..+.|.||+++..+ ...+| |||+-+ |....... ..||+||..+..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~l-~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKHL-PQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHHhhC-CCCchhHHHHHH
Confidence 45689999999764 68888 999944 76665433 349999998743
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.10 E-value=0.0049 Score=45.98 Aligned_cols=48 Identities=19% Similarity=0.698 Sum_probs=34.2
Q ss_pred CCcccccccccccCCCeeeEcC-CCCC---ccCHHHHHHHHhc--CCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLP-ECLH---LFHVPCIDMWLSS--HSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~-~C~H---~fH~~Ci~~wl~~--~~~CP~CR~~~~~ 148 (176)
.+..|-||.++-. +. ..| .|.. ..|.+|+..|+.. ..+|++|+.+...
T Consensus 7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4668999998843 22 245 2334 5699999999965 4569999887643
No 73
>PHA03096 p28-like protein; Provisional
Probab=96.09 E-value=0.0027 Score=52.04 Aligned_cols=46 Identities=28% Similarity=0.673 Sum_probs=33.7
Q ss_pred cccccccccccCC----CeeeEcCCCCCccCHHHHHHHHhcC---CCCccccc
Q 040159 99 DTCAVCLGDFKEG----EQVRVLPECLHLFHVPCIDMWLSSH---SNCPLCRA 144 (176)
Q Consensus 99 ~~C~ICl~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~CR~ 144 (176)
-.|.||++..... ..--.|+.|.|.|+..|+..|-... .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999987653 2444777899999999999997542 33555543
No 74
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0041 Score=47.25 Aligned_cols=33 Identities=27% Similarity=0.726 Sum_probs=26.4
Q ss_pred CCCCccCHHHHHHHHhc----CC-------CCccccccccCCCC
Q 040159 119 ECLHLFHVPCIDMWLSS----HS-------NCPLCRANANAAPP 151 (176)
Q Consensus 119 ~C~H~fH~~Ci~~wl~~----~~-------~CP~CR~~~~~~~~ 151 (176)
.||.-||.-|+..||+. +. .||+|-.++.-+++
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS 232 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS 232 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence 39999999999999964 11 29999998866554
No 75
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.98 E-value=0.0025 Score=55.83 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-----CCCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-----HSNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~CR~~~~~ 148 (176)
.++.+|.+|-+.-++. .... |.|.||..|+..++.. +.+||.|-..+.-
T Consensus 534 k~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 3445899999875433 5555 9999999999998743 5679999877743
No 76
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0026 Score=51.78 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=38.5
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.|-||...|..+ .+.. |+|.|+..|-..-++....|++|-+...
T Consensus 243 ~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 243 KCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred cccccccccccc---hhhc-CCceeehhhhccccccCCcceecccccc
Confidence 599999999977 5565 9999999999999999999999977663
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.00053 Score=57.69 Aligned_cols=48 Identities=21% Similarity=0.666 Sum_probs=42.6
Q ss_pred cccccccccccCC-CeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEG-EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+||.++|+.. +.+-.+- |||.+|.+|+..|+.....||.|++.+.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 4799999999876 6777776 9999999999999999889999998773
No 78
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.81 E-value=0.0046 Score=36.21 Aligned_cols=41 Identities=24% Similarity=0.651 Sum_probs=23.6
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC--CCccc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS--NCPLC 142 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~C 142 (176)
|.+|-+..-.+....... |+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777776664444434 888999999999998765 69987
No 79
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.69 E-value=0.0031 Score=49.97 Aligned_cols=44 Identities=25% Similarity=0.640 Sum_probs=32.2
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
-|.-|...=. ++...++. |+|+||..|...-. ...||+||.++.
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence 3666655433 77888887 99999999975422 227999999873
No 80
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.012 Score=47.52 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=36.6
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc--CCCCcccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS--HSNCPLCRANAN 147 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~CR~~~~ 147 (176)
..+.+|++|-+.-.. .....+ |+|+||-.||..-+.- .-+||.|-.++.
T Consensus 237 t~~~~C~~Cg~~Pti--P~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTI--PHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCC--Ceeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345699999887332 334455 9999999999887654 357999988774
No 81
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.57 E-value=0.01 Score=35.52 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=21.4
Q ss_pred cccccccccCCCeeeEcC-CCCCccCHHHHHHHHh-cCCCCccccccc
Q 040159 101 CAVCLGDFKEGEQVRVLP-ECLHLFHVPCIDMWLS-SHSNCPLCRANA 146 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~ 146 (176)
|++|.+++...+ ....| .|++.++..|...-+. .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984333 23444 3789888888777775 467899999875
No 82
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.0023 Score=52.09 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=29.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
+..|+||++.- .....|+ |||. ..|...= ++-+.||+||+.+.+
T Consensus 300 ~~LC~ICmDaP---~DCvfLe-CGHm--VtCt~CG-krm~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLE-CGHM--VTCTKCG-KRMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCC---cceEEee-cCcE--Eeehhhc-cccccCchHHHHHHH
Confidence 45799999974 4567888 9998 4443221 112379999987744
No 83
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.015 Score=46.45 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=43.1
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.|++|.+.+.+.-.+.+|..|||+|..+|....+.....||+|-.++
T Consensus 223 iCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 223 ICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL 269 (303)
T ss_pred ecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence 69999999998887777777999999999999999999999998887
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.012 Score=48.19 Aligned_cols=47 Identities=30% Similarity=0.697 Sum_probs=38.3
Q ss_pred cccccccccccCCC---eeeEcCCCCCccCHHHHHHHHhcC-CCCccccccc
Q 040159 99 DTCAVCLGDFKEGE---QVRVLPECLHLFHVPCIDMWLSSH-SNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~---~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~CR~~~ 146 (176)
..|-||-++|+..+ .-+.|. |||.|+..|+..-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999999764 445666 99999999998877654 4699999985
No 85
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.75 E-value=0.017 Score=47.43 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=34.7
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-cCCCCccc-cccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLC-RANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~C-R~~~ 146 (176)
..|+.|..-+... ..++.|+|.|+..||..-|. ....||.| |+++
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdv 321 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDV 321 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccc
Confidence 4699998887765 34466999999999987765 56779999 4444
No 86
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.69 E-value=0.019 Score=52.38 Aligned_cols=39 Identities=28% Similarity=0.671 Sum_probs=27.5
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPL 141 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~ 141 (176)
|+||--.+. +....... |+|+.|.+|...|+.....||.
T Consensus 1031 C~~C~l~V~-gss~~Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVR-GSSNFCGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEee-ccchhhcc-ccccccHHHHHHHHhcCCcCCC
Confidence 555444333 22333343 9999999999999999999985
No 87
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.53 E-value=0.041 Score=33.74 Aligned_cols=34 Identities=35% Similarity=0.769 Sum_probs=29.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHH
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDM 131 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~ 131 (176)
...|.+|-+.|.+++.+.+-|.|+-.+|.+|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4579999999998888999999999999999643
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.29 E-value=0.024 Score=46.85 Aligned_cols=43 Identities=26% Similarity=0.623 Sum_probs=33.1
Q ss_pred CcccccccccccCCCeeeEcCCC--CCccCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPEC--LHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C--~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
-.+|+||.+.+..+ ..+ | ||..+.+|-. +..+.||.||.++..
T Consensus 48 lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCcccccccc
Confidence 34899999998866 444 6 7888888864 456779999998853
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.24 E-value=0.021 Score=46.51 Aligned_cols=45 Identities=24% Similarity=0.593 Sum_probs=37.6
Q ss_pred cccccccccccCCC-eeeEcCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 99 DTCAVCLGDFKEGE-QVRVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 99 ~~C~ICl~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
..|+||.+.+-... .+..++ |||..|..|.......+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 35999998876554 556777 9999999999999887888999977
No 90
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.78 E-value=0.11 Score=44.05 Aligned_cols=27 Identities=33% Similarity=1.005 Sum_probs=20.2
Q ss_pred CCCccCHHHHHHHHhc-------------CCCCccccccc
Q 040159 120 CLHLFHVPCIDMWLSS-------------HSNCPLCRANA 146 (176)
Q Consensus 120 C~H~fH~~Ci~~wl~~-------------~~~CP~CR~~~ 146 (176)
|.-.+|.+|+.+|+.. +.+||+||+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 4556789999998743 23599999975
No 91
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.72 E-value=0.088 Score=42.62 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=38.0
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
....|+|...+|........+-.|||+|-..++..-- ....||+|-.++.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 3448999999996555444443399999999999872 3557999988874
No 92
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.14 E-value=0.035 Score=50.71 Aligned_cols=44 Identities=27% Similarity=0.651 Sum_probs=34.8
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc--CCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS--HSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--~~~CP~CR~~~~ 147 (176)
..|.||++ .+.....+ |+|.|+.+|+..-+.. ...||+||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 35556666 9999999999888754 335999998773
No 93
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.08 E-value=0.067 Score=44.69 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=35.5
Q ss_pred CCcccccccccccCCCeee-EcCCCCCccCHHHHHHHHh-cCCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVR-VLPECLHLFHVPCIDMWLS-SHSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~-~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~ 146 (176)
+++.|+.|++.+...|+-. -.| ||...|.-|...--+ .+..||.||+..
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 4556999999998776443 344 898888877554332 356799999876
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=0.061 Score=49.88 Aligned_cols=36 Identities=28% Similarity=0.533 Sum_probs=29.0
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHH
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL 133 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 133 (176)
..++.|.+|...+... .-.+-| |||.||.+|+..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567999999888754 556777 99999999997764
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.55 E-value=0.036 Score=53.20 Aligned_cols=44 Identities=27% Similarity=0.730 Sum_probs=36.4
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRAN 145 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 145 (176)
..|.||++..... . .+.. |||.++..|...|+..+..||+|+..
T Consensus 1154 ~~c~ic~dil~~~-~-~I~~-cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQ-G-GIAG-CGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHhc-C-Ceee-echhHhhhHHHHHHHHhccCcchhhh
Confidence 3799999998833 1 2333 99999999999999999999999753
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.54 E-value=0.068 Score=32.82 Aligned_cols=43 Identities=30% Similarity=0.607 Sum_probs=30.0
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.|..|... +..-.++| |+|+.+..|.+- .+-+-||+|-.++..
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccCh--hhccCCCCCCCcccC
Confidence 45556554 23447888 999999998654 344569999888843
No 97
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.89 E-value=0.43 Score=34.28 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=14.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040159 11 GLQFSPLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 11 ~~~~~~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
.+.-+.++.++++++++++.+++++.++
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHH
Confidence 3334455666666666665544433333
No 98
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=91.03 E-value=0.68 Score=26.18 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040159 18 LIGLLGVIAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
+-++++++++++++++.++++.. |++|++
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaC-cykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYAC-CYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHcccc
Confidence 44555566666666555555543 444433
No 99
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.11 Score=40.70 Aligned_cols=39 Identities=33% Similarity=0.738 Sum_probs=28.6
Q ss_pred cccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCcccccccc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
|-.|.+ .+..+.++| |.|. +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~---~~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCc---CCceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 666655 467899999 9876 78888543 345999988763
No 100
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=0.1 Score=41.93 Aligned_cols=55 Identities=24% Similarity=0.651 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCee-eEcCCC-----CCccCHHHHHHHHhcC--------CCCccccccccCCCCC
Q 040159 97 NEDTCAVCLGDFKEGEQV-RVLPEC-----LHLFHVPCIDMWLSSH--------SNCPLCRANANAAPPP 152 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~-~~l~~C-----~H~fH~~Ci~~wl~~~--------~~CP~CR~~~~~~~~~ 152 (176)
.+..|=||+..=++...- -+-| | .|=.|..|+..|+..+ .+||.|+......-|+
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~ 87 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQ 87 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccc
Confidence 456899999985443211 2445 5 4789999999998432 2499999887655544
No 101
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=90.64 E-value=0.15 Score=40.02 Aligned_cols=10 Identities=10% Similarity=0.043 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q 040159 2 DGEGAGHQPG 11 (176)
Q Consensus 2 ~~~~~~~~~~ 11 (176)
+.+|+...+.
T Consensus 23 ~Ia~d~~~~~ 32 (221)
T PF08374_consen 23 NIAGDPASSR 32 (221)
T ss_pred cccCCCCccc
Confidence 4555554443
No 102
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.38 E-value=0.32 Score=35.37 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=35.4
Q ss_pred CCcccccccccccCCCeeeEcC---CCCCccCHHHHHHHHh---cCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLP---ECLHLFHVPCIDMWLS---SHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~---~C~H~fH~~Ci~~wl~---~~~~CP~CR~~~~ 147 (176)
.-.+|.||.+.-.++ +.|. .||...+..|....++ ....||+|+.+..
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 445899999986544 3333 5899999999876543 3667999999883
No 103
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.085 Score=43.55 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=31.1
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccCC
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAA 149 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~ 149 (176)
.|--|-.-+. ..-|+.| |+|+||.+|-.. ..-+.||.|-..|.++
T Consensus 92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 5666644433 3458899 999999999643 2245799998777554
No 104
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.28 E-value=0.72 Score=34.52 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=20.8
Q ss_pred CcccccccccccCCCeeeEcC------C-----CC-CccCHHHHHHHH
Q 040159 98 EDTCAVCLGDFKEGEQVRVLP------E-----CL-HLFHVPCIDMWL 133 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~------~-----C~-H~fH~~Ci~~wl 133 (176)
+..|+|||+--.+. .+|- . |+ -.-|..|++++-
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 45899999975433 2222 1 32 235899999874
No 105
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.25 E-value=0.15 Score=30.28 Aligned_cols=30 Identities=27% Similarity=0.744 Sum_probs=21.8
Q ss_pred C-CCccCHHHHHHHHhcCCCCccccccccCC
Q 040159 120 C-LHLFHVPCIDMWLSSHSNCPLCRANANAA 149 (176)
Q Consensus 120 C-~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~ 149 (176)
| .|..+..|+...+.....||+|..++++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 7 59999999999999999999999988543
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=0.41 Score=40.75 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=36.9
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC---CCccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS---NCPLC 142 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~---~CP~C 142 (176)
.-..|+|=.+.=.++..-..|. |||+..++-++.-.++.. .||+|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 3457999877766667778888 999999999999887654 59999
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=0.21 Score=42.80 Aligned_cols=38 Identities=24% Similarity=0.595 Sum_probs=28.3
Q ss_pred CCcccccccccccCC-CeeeEcCCCCCccCHHHHHHHHhc
Q 040159 97 NEDTCAVCLGDFKEG-EQVRVLPECLHLFHVPCIDMWLSS 135 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~ 135 (176)
...+|.||..++... +...+.. |+|.|+.+|..+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhh
Confidence 456899999555444 4444454 9999999999999864
No 108
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=87.53 E-value=0.55 Score=32.52 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 17 LLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 17 ~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
..+++++++.++.+++++++++-+
T Consensus 61 ~~iili~lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYF 84 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEE
Confidence 334444444444444444444433
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.01 E-value=0.36 Score=39.66 Aligned_cols=27 Identities=30% Similarity=0.758 Sum_probs=21.2
Q ss_pred CCCccCHHHHHHHHhc-------------CCCCccccccc
Q 040159 120 CLHLFHVPCIDMWLSS-------------HSNCPLCRANA 146 (176)
Q Consensus 120 C~H~fH~~Ci~~wl~~-------------~~~CP~CR~~~ 146 (176)
|.-.+|.+|+.+|+.. +.+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 5677889999998743 34599999976
No 110
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.74 E-value=0.3 Score=39.01 Aligned_cols=50 Identities=28% Similarity=0.711 Sum_probs=37.0
Q ss_pred CCccccccccc-ccCCC-eeeEcCCCCCccCHHHHHHHHhcC-CCCc--cccccc
Q 040159 97 NEDTCAVCLGD-FKEGE-QVRVLPECLHLFHVPCIDMWLSSH-SNCP--LCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~-~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP--~CR~~~ 146 (176)
.+..|+||-.+ |-.++ .+.+-|.|-|..|.+|++.-+.+. ..|| -|-.-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 35589999876 33333 666777899999999999999764 5699 675443
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.74 E-value=0.82 Score=42.08 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=33.0
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcc--cccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPL--CRAN 145 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~--CR~~ 145 (176)
.|.+|-..+. | .....+.|+|.-|.+|+..|+..++.||. |-..
T Consensus 781 ~CtVC~~vi~-G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIR-G-VDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred Cceeecceee-e-eEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 6888877655 2 22233359999999999999999999877 6443
No 112
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.70 E-value=0.42 Score=39.15 Aligned_cols=50 Identities=22% Similarity=0.668 Sum_probs=35.7
Q ss_pred CcccccccccccCCCe-eeEcCCCC-----CccCHHHHHHHHh--cCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQ-VRVLPECL-----HLFHVPCIDMWLS--SHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~-~~~l~~C~-----H~fH~~Ci~~wl~--~~~~CP~CR~~~~~ 148 (176)
+..|-||..+...... ....| |. +..|..|+..|+. .+..|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999997654321 34555 62 6679999999997 45569999876533
No 113
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.63 E-value=0.23 Score=45.15 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=38.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC---CCCccccccccCCCC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH---SNCPLCRANANAAPP 151 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~CR~~~~~~~~ 151 (176)
..+|.||+..|..+ ..+. |.|.|...|+..-|... ..||+|++.+.+..-
T Consensus 21 ~lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 56899999999876 4554 99999999998766543 459999987755443
No 114
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=83.97 E-value=0.83 Score=27.67 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=23.3
Q ss_pred cccccccccCCC------eeeEcCCCCCccCHHHHHHHHhcCCCCcccc
Q 040159 101 CAVCLGDFKEGE------QVRVLPECLHLFHVPCIDMWLSSHSNCPLCR 143 (176)
Q Consensus 101 C~ICl~~~~~~~------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR 143 (176)
|.-|+..|..+. ..-.-|+|++.|+.+|=.---..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 666777777642 3455667999999999543334556799884
No 115
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=1.2 Score=36.46 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=33.4
Q ss_pred cccccccc-ccCCC-eeeEcCCCCCccCHHHHHHHHhcC-CCCccccccc
Q 040159 100 TCAVCLGD-FKEGE-QVRVLPECLHLFHVPCIDMWLSSH-SNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~-~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~CR~~~ 146 (176)
.|++|-.. |-.++ .+.+-+ |+|..|.+|++.-+..+ ..||-|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 47888654 34444 334445 99999999999998764 5699997666
No 116
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=82.04 E-value=1.4 Score=36.72 Aligned_cols=66 Identities=23% Similarity=0.457 Sum_probs=47.4
Q ss_pred CCHHHHHhCCceeeccCC----CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 78 TSSVMRVLMPVFRFSSKD----CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~----~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
+.++..-.+|...+.+.. .....|-.|.++.......+--. |.|.||.+|-.---..-..||-|..
T Consensus 306 LARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 445555566666666655 23446999988877776666665 9999999996655566677999964
No 117
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=81.39 E-value=0.85 Score=23.61 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=13.2
Q ss_pred ccccccccccCCCeeeEcCCCCCcc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLF 124 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~f 124 (176)
.|+-|...+. .....-|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4666666654 2334445577776
No 118
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=80.49 E-value=0.74 Score=39.92 Aligned_cols=33 Identities=33% Similarity=0.639 Sum_probs=27.8
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL 133 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 133 (176)
++..|+||..-|+++ ++|| |+|..|..|...-+
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhhc
Confidence 456899999999977 8898 99999999976544
No 119
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=80.25 E-value=3.7 Score=30.44 Aligned_cols=28 Identities=7% Similarity=0.248 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCcCC
Q 040159 23 GVIAGFMMVATYHCISLGCCCCNNNQQA 50 (176)
Q Consensus 23 ~il~~~~vl~~~~~i~~~~c~~r~~~~~ 50 (176)
.|+++++++++++++++.||-+|++.+.
T Consensus 33 tILiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 33 TILIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3344445555555555566766655443
No 120
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.95 E-value=1.4 Score=39.53 Aligned_cols=43 Identities=35% Similarity=0.944 Sum_probs=36.5
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
...+.|.||+.+. ..+..+ |. |..|...|+..+..||.|+..+
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhh
Confidence 4567899999997 446666 88 8999999999999999998876
No 121
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=79.56 E-value=1.9 Score=30.98 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040159 20 GLLGVIAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 20 ~~i~il~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
.+++|+++++.-++..++++.||.+|++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444455544333
No 122
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=79.14 E-value=10 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=12.9
Q ss_pred HhcCCCCccccccccCCCC
Q 040159 133 LSSHSNCPLCRANANAAPP 151 (176)
Q Consensus 133 l~~~~~CP~CR~~~~~~~~ 151 (176)
+.+...|+.|+++++..+.
T Consensus 82 LGr~D~CM~C~~pLTLd~~ 100 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTLDPS 100 (114)
T ss_pred hchhhccCcCCCcCccCch
Confidence 3445579999999954433
No 123
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=79.08 E-value=1.7 Score=29.68 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=19.1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040159 7 GHQPGLQFSPLLIGLLGVIAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 7 ~~~~~~~~~~~~i~~i~il~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
||+-..-+....+|......+.++++++++....+|+.|..
T Consensus 29 GgdL~atS~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 29 GGDLQATSSFVAYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred CCCeEEeehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 33333334444455544444555555555444445544443
No 124
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.93 E-value=0.88 Score=42.06 Aligned_cols=43 Identities=28% Similarity=0.648 Sum_probs=32.1
Q ss_pred CcccccccccccC-C---CeeeEcCCCCCccCHHHHHHHHhcCCCCccc
Q 040159 98 EDTCAVCLGDFKE-G---EQVRVLPECLHLFHVPCIDMWLSSHSNCPLC 142 (176)
Q Consensus 98 ~~~C~ICl~~~~~-~---~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C 142 (176)
++.|.-|++-.-. + +.+.++. |+|+||+.|+..-..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 4479999887652 2 5777887 999999999988776655 5444
No 125
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.67 E-value=1.8 Score=33.67 Aligned_cols=42 Identities=29% Similarity=0.769 Sum_probs=29.4
Q ss_pred CCCccccccccc-----ccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccc
Q 040159 96 CNEDTCAVCLGD-----FKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCR 143 (176)
Q Consensus 96 ~~~~~C~ICl~~-----~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR 143 (176)
.....|.+|-+. |+. +.+..-+.|+-+||..|.. +..||-|.
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred hCCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 344589999753 222 2555555699999999976 26799994
No 126
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.55 E-value=1.2 Score=38.74 Aligned_cols=37 Identities=24% Similarity=0.634 Sum_probs=30.7
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS 135 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~ 135 (176)
....+|-||.+.+.. .+..+. |+|.|+..|...++.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 456789999999875 556666 9999999999999865
No 127
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=76.92 E-value=1.5 Score=35.56 Aligned_cols=48 Identities=27% Similarity=0.581 Sum_probs=35.1
Q ss_pred cccccccccccCCCeeeEc---CCCCCccCHHHHHHHHhc---------CCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVL---PECLHLFHVPCIDMWLSS---------HSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l---~~C~H~fH~~Ci~~wl~~---------~~~CP~CR~~~ 146 (176)
.+|.+|.+++...+..+.. +.|+-.+|..|+...+.. ...||.|+.-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 4899999999655555443 268888999999996533 23499998744
No 128
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=75.69 E-value=1.6 Score=34.24 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=34.4
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRAN 145 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 145 (176)
..|.+|..-.-.+ ++.-. |+=.+|..|+..++.+...||-|-.-
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchhcc
Confidence 3799998876533 33333 88889999999999999999999443
No 130
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.29 E-value=4.1 Score=28.83 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=35.0
Q ss_pred CcccccccccccCCC----------eeeEcCCCCCccCHHHHHHHHhcCCCCcccc
Q 040159 98 EDTCAVCLGDFKEGE----------QVRVLPECLHLFHVPCIDMWLSSHSNCPLCR 143 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~----------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR 143 (176)
...|.-|+..|.... ..-.-++|++.|+.+|-.-+-..-.+||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999886431 1223456999999999888888888899995
No 131
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=75.08 E-value=3.3 Score=27.91 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=6.1
Q ss_pred HhhhcCCCCcCC
Q 040159 39 LGCCCCNNNQQA 50 (176)
Q Consensus 39 ~~~c~~r~~~~~ 50 (176)
..+|+.|++.++
T Consensus 52 fvCC~kRkrsRr 63 (94)
T PF05393_consen 52 FVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHhhhccC
Confidence 345655555443
No 132
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=74.28 E-value=3.5 Score=22.21 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=24.2
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
|..|-+.+...+..... =+..||.+| ..|..|..++
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 77888887765333222 467899998 4677787665
No 133
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=73.50 E-value=4.6 Score=27.34 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=28.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040159 6 AGHQPGLQFSPLLIGLLGVIAGFMMVATYHCISLGCC 42 (176)
Q Consensus 6 ~~~~~~~~~~~~~i~~i~il~~~~vl~~~~~i~~~~c 42 (176)
+++++...|+-...+++++++++.++.+.|.++.+=|
T Consensus 26 ~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDl 62 (91)
T PF01708_consen 26 APSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDL 62 (91)
T ss_pred CCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888777776643
No 134
>PHA02844 putative transmembrane protein; Provisional
Probab=73.46 E-value=14 Score=24.13 Aligned_cols=9 Identities=0% Similarity=-0.001 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 040159 30 MVATYHCIS 38 (176)
Q Consensus 30 vl~~~~~i~ 38 (176)
+++++.+++
T Consensus 60 ~~~~~~flY 68 (75)
T PHA02844 60 FATFLTFLY 68 (75)
T ss_pred HHHHHHHHH
Confidence 333333333
No 135
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.34 E-value=1.2 Score=40.45 Aligned_cols=42 Identities=24% Similarity=0.553 Sum_probs=30.5
Q ss_pred cccccccccccCCCee-eEcCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 99 DTCAVCLGDFKEGEQV-RVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~-~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
..|.||+..|-..... +.+. |||..|..|...-. +.+|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCccccc-ccchHHHHHHHhHh--hccCC-CCc
Confidence 3699999998766533 4444 99999999987643 55677 543
No 136
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.32 E-value=1.8 Score=40.30 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred CcccccccccccCCC---eeeEcCCCCCccCHHHHHHHHhc------CCCCccccccccCCCC
Q 040159 98 EDTCAVCLGDFKEGE---QVRVLPECLHLFHVPCIDMWLSS------HSNCPLCRANANAAPP 151 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~---~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~CR~~~~~~~~ 151 (176)
...|.+|..++.+++ .+..+..|+|.||-.||..|..+ +-.|++|...+..+..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 347888888887622 23333359999999999999743 2348999887755444
No 137
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=72.03 E-value=2.1 Score=29.59 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 12 LQFSPLLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 12 ~~~~~~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
.....+++.+++++++++++.+++.++..
T Consensus 59 ~~~~iili~lls~v~IlVily~IyYFVIL 87 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYAIYYFVIL 87 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhhheEEEEE
Confidence 34566666666666666665444444444
No 138
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=71.50 E-value=1.3 Score=39.95 Aligned_cols=44 Identities=27% Similarity=0.711 Sum_probs=25.7
Q ss_pred CCccccccccc-----ccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 97 NEDTCAVCLGD-----FKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~-----~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
....|.+|-.. |+.....+... |+++||+.|... .+..||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCchHH
Confidence 34478888221 22122333444 999999999533 3334999933
No 139
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=70.07 E-value=3.1 Score=38.94 Aligned_cols=48 Identities=19% Similarity=0.649 Sum_probs=34.6
Q ss_pred CCcccccccccccCCCeeeEcCCCC-----CccCHHHHHHHHhc--CCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECL-----HLFHVPCIDMWLSS--HSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~--~~~CP~CR~~~ 146 (176)
++..|-||..+=..++. ...| |+ -..|.+|+.+|+.- ...|-+|..+.
T Consensus 11 d~~~CRICr~e~~~d~p-LfhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 11 DKRSCRICRTEDIRDDP-LFHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred cchhceeecCCCCCCCc-Cccc-ccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 44689999987544443 3444 53 35899999999964 45599998876
No 140
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=69.82 E-value=10 Score=35.48 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhcCCC
Q 040159 20 GLLGVIA-GFMMVATYHCISLGCCCCNN 46 (176)
Q Consensus 20 ~~i~il~-~~~vl~~~~~i~~~~c~~r~ 46 (176)
++++||. ++++++++++++..||+|+.
T Consensus 274 fLl~ILG~~~livl~lL~vLl~yCrrkc 301 (807)
T PF10577_consen 274 FLLAILGGTALIVLILLCVLLCYCRRKC 301 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3334443 45555666666666676543
No 141
>PF15050 SCIMP: SCIMP protein
Probab=67.59 E-value=10 Score=27.09 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Q 040159 18 LIGLLGVIAGFMMV-ATYHCISL 39 (176)
Q Consensus 18 ~i~~i~il~~~~vl-~~~~~i~~ 39 (176)
+|+.++|+++.+++ +++|++.+
T Consensus 10 iiLAVaII~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 44444443
No 142
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=67.06 E-value=11 Score=28.82 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCch
Q 040159 3 GEGAGHQPGLQFSP 16 (176)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (176)
..|.||.+.++++.
T Consensus 16 ~~~~~gmp~ld~~t 29 (181)
T PRK13454 16 AASAPGMPQLDFST 29 (181)
T ss_pred ccCCCCCCCCcHHh
Confidence 35778888877753
No 143
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=66.80 E-value=7.7 Score=23.14 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=17.4
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHH--HHHHhc-----CCCCcccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCI--DMWLSS-----HSNCPLCRAN 145 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci--~~wl~~-----~~~CP~CR~~ 145 (176)
.|+|....+. -.+|-.. |.|. .|. ..|+.. .-.||+|.++
T Consensus 4 ~CPls~~~i~--~P~Rg~~-C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIR--IPVRGKN-CKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-S--SEEEETT---SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEE--eCccCCc-Cccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 4777777665 3456665 8887 353 345533 2359999764
No 144
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=66.62 E-value=3.7 Score=22.86 Aligned_cols=26 Identities=31% Similarity=0.699 Sum_probs=15.1
Q ss_pred ccccccccccCCCe-------eeEcCCCCCccC
Q 040159 100 TCAVCLGDFKEGEQ-------VRVLPECLHLFH 125 (176)
Q Consensus 100 ~C~ICl~~~~~~~~-------~~~l~~C~H~fH 125 (176)
.|+=|-..|+-++. ...-+.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778777765432 122234777774
No 145
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=66.01 E-value=11 Score=27.56 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHH
Q 040159 1 MDGEGAGHQPGLQFSPLLIGLLGVIA 26 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~~i~il~ 26 (176)
|.+||-|-.-..+.+.+.+++++++.
T Consensus 90 lsteGTGL~lGlsn~~LgwIL~gVf~ 115 (138)
T PF07123_consen 90 LSTEGTGLPLGLSNNLLGWILLGVFG 115 (138)
T ss_pred hcCCCccccccccCchhHHHHHHHHH
Confidence 56777777667777666666655543
No 146
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=65.77 E-value=4.6 Score=24.16 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=25.6
Q ss_pred cccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 101 CAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 101 C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
|+-|-+.+..++.+... -+..||.+| ..|-.|+.++..
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCC
Confidence 66777777755544323 567888888 468888877733
No 147
>PLN02189 cellulose synthase
Probab=65.48 E-value=8.9 Score=36.93 Aligned_cols=52 Identities=21% Similarity=0.560 Sum_probs=36.3
Q ss_pred CCccccccccccc---CCCeeeEcCCCCCccCHHHHHHHH-hcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFK---EGEQVRVLPECLHLFHVPCIDMWL-SSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~CR~~~~~ 148 (176)
....|.||.+++. +++.......|+--.|..|.+-=- ..++.||.|+....+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3458999999975 344444444578889999993322 346779999998854
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=64.69 E-value=2.5 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=18.9
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
+...|.+|...|..-..-..-..||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 456899999999764444444469999999997544
No 149
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=64.19 E-value=16 Score=23.87 Aligned_cols=9 Identities=11% Similarity=-0.197 Sum_probs=3.8
Q ss_pred HHHhhhcCC
Q 040159 37 ISLGCCCCN 45 (176)
Q Consensus 37 i~~~~c~~r 45 (176)
++.+|..++
T Consensus 22 L~lHY~sk~ 30 (75)
T PF06667_consen 22 LILHYRSKW 30 (75)
T ss_pred HHHHHHHhc
Confidence 333444443
No 150
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=63.60 E-value=12 Score=23.66 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHH
Q 040159 1 MDGEGAGHQPGLQFSPLLIGLLGVI 25 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~~i~il 25 (176)
|..||.|-.-..+.+.+..++++++
T Consensus 18 lsteGtGl~lGls~~~LgwIL~gvf 42 (67)
T PLN00082 18 LSTEGTGLGLGVSNGKLTWILVGVT 42 (67)
T ss_pred hcCCCccccccccCchhhhHHHHHH
Confidence 5667777666666666555555544
No 151
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=62.60 E-value=7.8 Score=32.43 Aligned_cols=49 Identities=24% Similarity=0.582 Sum_probs=32.7
Q ss_pred Cccccccccccc---------------CCC-eeeEcCCCCCccCHHHHHHHHhc---------CCCCcccccccc
Q 040159 98 EDTCAVCLGDFK---------------EGE-QVRVLPECLHLFHVPCIDMWLSS---------HSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~---------------~~~-~~~~l~~C~H~fH~~Ci~~wl~~---------~~~CP~CR~~~~ 147 (176)
+.+|++|+..=. .+. .-...| |||+--..-..-|.+. +..||.|-..+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 458999997521 011 223556 9999777777888754 234999977763
No 152
>PHA02819 hypothetical protein; Provisional
Probab=62.52 E-value=30 Score=22.28 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 040159 27 GFMMVATYHCIS 38 (176)
Q Consensus 27 ~~~vl~~~~~i~ 38 (176)
++++++++.+++
T Consensus 55 ~~~~~~~~~flY 66 (71)
T PHA02819 55 TIVFVIIFIIFY 66 (71)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 153
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=62.46 E-value=14 Score=22.78 Aligned_cols=47 Identities=23% Similarity=0.573 Sum_probs=31.8
Q ss_pred ccccccccccCCCeeeEcCCC--CCccCHHHHHHHHhcCCCCccccccccCCC
Q 040159 100 TCAVCLGDFKEGEQVRVLPEC--LHLFHVPCIDMWLSSHSNCPLCRANANAAP 150 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C--~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~ 150 (176)
.|--|-.++..+..-... | ..-|+.+|.+.-| +..||.|-..+.+.|
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 467777777655422222 4 3569999998876 678999988875543
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.73 E-value=52 Score=27.68 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=31.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC---CCccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS---NCPLC 142 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~---~CP~C 142 (176)
-..|++=-+.-.++..-..+. |||+.-+.-++..-++.. .||+|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 346887655544445567777 999999999988766533 49999
No 155
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=61.59 E-value=7.2 Score=23.36 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=24.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHH
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL 133 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 133 (176)
...|.+|-..|..-..-..-..||++|+.+|.....
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 356899988887543333333599999999976543
No 156
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=61.29 E-value=21 Score=26.93 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040159 17 LLIGLLGVIAGFMMVATYHCISLGCC 42 (176)
Q Consensus 17 ~~i~~i~il~~~~vl~~~~~i~~~~c 42 (176)
.+.-.+.|++++..++++|++++.++
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444545554544444444433
No 157
>PF14979 TMEM52: Transmembrane 52
Probab=60.76 E-value=26 Score=25.95 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=15.3
Q ss_pred CCCchHHHHHHHHHHHHHHH-HHHHHHHHh-hhcCCC
Q 040159 12 LQFSPLLIGLLGVIAGFMMV-ATYHCISLG-CCCCNN 46 (176)
Q Consensus 12 ~~~~~~~i~~i~il~~~~vl-~~~~~i~~~-~c~~r~ 46 (176)
.+|..++++.++++++++++ -.+.....| +|.+|+
T Consensus 14 ~~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 14 TRWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35555555554444443333 223333334 454444
No 158
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=60.46 E-value=18 Score=21.58 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 040159 26 AGFMMVATYHCISLGCCCCN 45 (176)
Q Consensus 26 ~~~~vl~~~~~i~~~~c~~r 45 (176)
+++++++.||+-..+||+.-
T Consensus 10 li~lv~~gy~~hmkrycraf 29 (54)
T PF13260_consen 10 LIVLVVVGYFCHMKRYCRAF 29 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566778888889999653
No 159
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.20 E-value=4.1 Score=23.88 Aligned_cols=44 Identities=25% Similarity=0.551 Sum_probs=28.8
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHh------cCCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS------SHSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~------~~~~CP~CR~ 144 (176)
.|.||...-..+ .+..-..|+-.||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388998844444 4444445999999999865432 2345888853
No 160
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=59.84 E-value=15 Score=26.25 Aligned_cols=25 Identities=44% Similarity=0.477 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHH
Q 040159 1 MDGEGAGHQPGLQFSPLLIGLLGVI 25 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~~i~il 25 (176)
|.+||.|-.-..+.+.+.+++++++
T Consensus 79 lsteGtGl~lGlsn~~LgwIL~gVf 103 (128)
T PLN00077 79 MSTEGTGLSLGLSNNLLGWILLGVF 103 (128)
T ss_pred hcCCCccccccccCchhhHHHHhHH
Confidence 5667777766666666655555544
No 161
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=59.73 E-value=22 Score=23.25 Aligned_cols=20 Identities=5% Similarity=-0.023 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhcCCCCc
Q 040159 29 MMVATYHCISLGCCCCNNNQ 48 (176)
Q Consensus 29 ~vl~~~~~i~~~~c~~r~~~ 48 (176)
++++...-++.+|..+++..
T Consensus 14 ~ifVap~wl~lHY~~k~~~~ 33 (75)
T TIGR02976 14 VIFVAPLWLILHYRSKRKTA 33 (75)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 33334444444555444443
No 162
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=59.08 E-value=4.4 Score=23.29 Aligned_cols=13 Identities=8% Similarity=-0.281 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhh
Q 040159 30 MVATYHCISLGCC 42 (176)
Q Consensus 30 vl~~~~~i~~~~c 42 (176)
+.++..+++++|.
T Consensus 22 i~iva~~iYRKw~ 34 (43)
T PF08114_consen 22 IGIVALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444555654
No 163
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=58.81 E-value=5.4 Score=22.10 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=15.2
Q ss_pred ccccccccccCCCe--------eeEcCCCCCccC
Q 040159 100 TCAVCLGDFKEGEQ--------VRVLPECLHLFH 125 (176)
Q Consensus 100 ~C~ICl~~~~~~~~--------~~~l~~C~H~fH 125 (176)
+|+=|...|..++. ++-. .|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~-~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCS-KCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECC-CCCCEeC
Confidence 57778888875442 3333 4778774
No 164
>PTZ00370 STEVOR; Provisional
Probab=58.54 E-value=11 Score=31.00 Aligned_cols=26 Identities=4% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040159 22 LGVIAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 22 i~il~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
++.++.+++.++++++++...+||.+
T Consensus 259 iaalvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444444445443444444
No 165
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=58.34 E-value=15 Score=24.29 Aligned_cols=52 Identities=25% Similarity=0.533 Sum_probs=20.4
Q ss_pred CCcccccccccccC---CCeeeEcCCCCCccCHHHHHHHHh-cCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKE---GEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~~ 148 (176)
+...|.||-+++-- ++.....-.|+--.++.|.+-=.+ .++.||.|+.+..+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 35579999998753 332222224777788889865444 46789999987744
No 166
>PHA03049 IMV membrane protein; Provisional
Probab=57.94 E-value=47 Score=21.18 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 040159 20 GLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 20 ~~i~il~~~~vl~~~~~i~~~ 40 (176)
+++++++++++.+++|.++.+
T Consensus 5 ~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445555556666666666654
No 167
>PLN02436 cellulose synthase A
Probab=56.98 E-value=16 Score=35.51 Aligned_cols=51 Identities=24% Similarity=0.606 Sum_probs=35.4
Q ss_pred Cccccccccccc---CCCeeeEcCCCCCccCHHHHHHHH-hcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFK---EGEQVRVLPECLHLFHVPCIDMWL-SSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~---~~~~~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~CR~~~~~ 148 (176)
...|.||-+++- +++.....-.|+--.|..|.+-=- ..++.||.|+....+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 458999999974 454443333477779999994322 246779999998854
No 168
>PRK01844 hypothetical protein; Provisional
Probab=56.82 E-value=29 Score=22.55 Aligned_cols=24 Identities=29% Similarity=0.055 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 040159 19 IGLLGVIAGFMMVATYHCISLGCC 42 (176)
Q Consensus 19 i~~i~il~~~~vl~~~~~i~~~~c 42 (176)
.+++++++.++-+++-|++.++|.
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555566665554
No 169
>PRK09458 pspB phage shock protein B; Provisional
Probab=56.67 E-value=25 Score=23.05 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCC
Q 040159 25 IAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 25 l~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
++++++++.-.-+..+|..+++.
T Consensus 10 liiF~ifVaPiWL~LHY~sk~~~ 32 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSKRQG 32 (75)
T ss_pred HHHHHHHHHHHHHHHhhcccccC
Confidence 33333444444444455544444
No 170
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.47 E-value=1.6 Score=31.84 Aligned_cols=45 Identities=33% Similarity=0.730 Sum_probs=25.8
Q ss_pred CCCccccccccc-ccCCCeeeEcCCCCCc-------cCHHHHHHH-HhcCC---CCccccccccC
Q 040159 96 CNEDTCAVCLGD-FKEGEQVRVLPECLHL-------FHVPCIDMW-LSSHS---NCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~-~~~~~~~~~l~~C~H~-------fH~~Ci~~w-l~~~~---~CP~CR~~~~~ 148 (176)
.++..|.||+.. |.++ |||. ||..|--.- ++.++ .|-+|+.....
T Consensus 63 ~ddatC~IC~KTKFADG--------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~i 119 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG--------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEI 119 (169)
T ss_pred CcCcchhhhhhcccccc--------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHH
Confidence 456699999874 5555 7775 333333222 22232 38888776543
No 171
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=56.21 E-value=7.6 Score=24.76 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=8.6
Q ss_pred ccCHHHHHHHHh
Q 040159 123 LFHVPCIDMWLS 134 (176)
Q Consensus 123 ~fH~~Ci~~wl~ 134 (176)
-||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 172
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=56.15 E-value=1.9 Score=24.74 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=15.2
Q ss_pred CCCccCHHHHHHHHhcCCCCccccc-cccC
Q 040159 120 CLHLFHVPCIDMWLSSHSNCPLCRA-NANA 148 (176)
Q Consensus 120 C~H~fH~~Ci~~wl~~~~~CP~CR~-~~~~ 148 (176)
|||.|-...-..= .....||.|.. .+.+
T Consensus 11 Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 11 CGHEFEVLQSISE-DDPVPCPECGSTEVRR 39 (42)
T ss_pred CCCEEEEEEEcCC-CCCCcCCCCCCCceEE
Confidence 7766654431111 22456999987 5543
No 173
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=56.04 E-value=6.1 Score=21.34 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=7.5
Q ss_pred cCCCCcccccc
Q 040159 135 SHSNCPLCRAN 145 (176)
Q Consensus 135 ~~~~CP~CR~~ 145 (176)
....||+|.++
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34579999653
No 174
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=55.90 E-value=19 Score=23.41 Aligned_cols=9 Identities=33% Similarity=0.659 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 040159 17 LLIGLLGVI 25 (176)
Q Consensus 17 ~~i~~i~il 25 (176)
+++.++.++
T Consensus 51 ~ii~ii~v~ 59 (72)
T PF12575_consen 51 LIISIIFVL 59 (72)
T ss_pred HHHHHHHHH
Confidence 333333333
No 175
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=55.71 E-value=24 Score=23.52 Aligned_cols=19 Identities=16% Similarity=0.112 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 040159 24 VIAGFMMVATYHCISLGCC 42 (176)
Q Consensus 24 il~~~~vl~~~~~i~~~~c 42 (176)
+++++++..++|..++++|
T Consensus 10 ~V~V~IVclliya~YRR~~ 28 (92)
T PHA02681 10 VIVISIVCYIVIMMYRRSC 28 (92)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4445555566666666665
No 176
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=55.66 E-value=25 Score=22.50 Aligned_cols=21 Identities=14% Similarity=-0.110 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 040159 20 GLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 20 ~~i~il~~~~vl~~~~~i~~~ 40 (176)
+++++++++++.+++|.++.+
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444555555566666666643
No 177
>PF15179 Myc_target_1: Myc target protein 1
Probab=55.51 E-value=42 Score=25.85 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=14.9
Q ss_pred CCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHH
Q 040159 8 HQPGLQFSPLLIGLLGVI-AGFMMVATYHCISL 39 (176)
Q Consensus 8 ~~~~~~~~~~~i~~i~il-~~~~vl~~~~~i~~ 39 (176)
+-..+++..+++.|.+.. +++++-+++|+++.
T Consensus 12 ~~~~f~~~~lIlaF~vSm~iGLviG~li~~Llt 44 (197)
T PF15179_consen 12 WLENFDWEDLILAFCVSMAIGLVIGALIWALLT 44 (197)
T ss_pred chhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556665554443 33333344444443
No 178
>PHA02650 hypothetical protein; Provisional
Probab=55.40 E-value=25 Score=23.22 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 040159 14 FSPLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
+..++++++.++++++++++|+-++
T Consensus 49 ~~~~ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 49 GQNFIFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444333343444444444444
No 179
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=55.10 E-value=15 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 040159 18 LIGLLGVIAGFMMVATYHCISLGC 41 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i~~~~ 41 (176)
+-++++|+++++++-+++++..++
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555666655555555553
No 180
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.05 E-value=5.7 Score=32.70 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=27.6
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH 136 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~ 136 (176)
..|.+|.+.+++..-|..-..=.|.||.-|-..-++.+
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 58999999999773332111127999999999988763
No 181
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=54.81 E-value=32 Score=21.40 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCceeeccCCCCCcccccccccccC--CCeeeEcCCCCCccCHHHHHHH
Q 040159 86 MPVFRFSSKDCNEDTCAVCLGDFKE--GEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 86 ~~~~~~~~~~~~~~~C~ICl~~~~~--~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
++....+... ....|+.|-..... .......+.||+.+|.+-...+
T Consensus 17 ~~v~~v~~~~-TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 17 IQVVEVDEAY-TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred CEEEEECCCC-CccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 3444444444 56689999988876 5566666679999998876554
No 182
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=54.78 E-value=7.3 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=12.1
Q ss_pred CCCccCHHHHHHHHhcCCCCccc
Q 040159 120 CLHLFHVPCIDMWLSSHSNCPLC 142 (176)
Q Consensus 120 C~H~fH~~Ci~~wl~~~~~CP~C 142 (176)
|||.|-..=-+.- .....||.|
T Consensus 34 Cgh~w~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT-RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc-cCCCCCCCC
Confidence 5665544433222 456668887
No 183
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=54.71 E-value=12 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=20.8
Q ss_pred CCCccCHHHHHHHHhcCCCCccccccccCCCCCC
Q 040159 120 CLHLFHVPCIDMWLSSHSNCPLCRANANAAPPPH 153 (176)
Q Consensus 120 C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 153 (176)
||+.-|.-=+.++.. -.+||.|+++.++.-.++
T Consensus 65 CGvC~~~LT~~EY~~-~~~Cp~C~spFNp~Ck~H 97 (105)
T COG4357 65 CGVCRKLLTRAEYGM-CGSCPYCQSPFNPGCKNH 97 (105)
T ss_pred hhhhhhhhhHHHHhh-cCCCCCcCCCCCcccccc
Confidence 666555555555433 344999999997655544
No 184
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=53.79 E-value=15 Score=26.39 Aligned_cols=26 Identities=42% Similarity=0.441 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHH
Q 040159 1 MDGEGAGHQPGLQFSPLLIGLLGVIA 26 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~~i~il~ 26 (176)
|..||.|-.-..+.+.+.+++++++.
T Consensus 89 lsteGTGlplGlsn~~LgwIL~gVf~ 114 (137)
T PLN00092 89 MSTEGTGLPFGLSNNLLGWILLGVFG 114 (137)
T ss_pred hcCCCccccccccCcchhhHHHhHHH
Confidence 56677777666676666666555543
No 185
>PHA02844 putative transmembrane protein; Provisional
Probab=53.53 E-value=20 Score=23.39 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=8.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 040159 14 FSPLLIGLLGVIAGFMMVATYH 35 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~ 35 (176)
+...+++++.+++++++.++|+
T Consensus 48 ~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 186
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=53.46 E-value=48 Score=21.25 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 040159 17 LLIGLLGVIAGFMMVATYHCISLGC 41 (176)
Q Consensus 17 ~~i~~i~il~~~~vl~~~~~i~~~~ 41 (176)
.++...+++++++++++++.+..++
T Consensus 8 ~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 8 MIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555554
No 187
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.44 E-value=13 Score=30.05 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=33.6
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.|+|---++........+-.|||+|-..-+.+. ..++|++|-+.+
T Consensus 113 iCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y 157 (293)
T KOG3113|consen 113 ICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAY 157 (293)
T ss_pred ecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcc
Confidence 799988887765544444449999998877653 367899998877
No 188
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=53.39 E-value=49 Score=26.47 Aligned_cols=9 Identities=22% Similarity=-0.060 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 040159 31 VATYHCISL 39 (176)
Q Consensus 31 l~~~~~i~~ 39 (176)
+|+++.+|+
T Consensus 204 vf~LvgLyr 212 (259)
T PF07010_consen 204 VFTLVGLYR 212 (259)
T ss_pred HHHHHHHHH
Confidence 333444443
No 189
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=53.22 E-value=39 Score=22.54 Aligned_cols=11 Identities=9% Similarity=-0.125 Sum_probs=4.6
Q ss_pred CCCCchHHHHH
Q 040159 11 GLQFSPLLIGL 21 (176)
Q Consensus 11 ~~~~~~~~i~~ 21 (176)
...+++.++..
T Consensus 19 ~~~l~pn~lMt 29 (85)
T PF10717_consen 19 LNGLNPNTLMT 29 (85)
T ss_pred ccccChhHHHH
Confidence 33444444433
No 190
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=52.56 E-value=15 Score=35.66 Aligned_cols=50 Identities=20% Similarity=0.577 Sum_probs=34.3
Q ss_pred Cccccccccccc---CCCeeeEcCCCCCccCHHHHHHHH--hcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFK---EGEQVRVLPECLHLFHVPCIDMWL--SSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~---~~~~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~CR~~~~~ 148 (176)
...|.||-+++. +++.....-.|+--.|..|. .+= ..++.||.|+....+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchhh
Confidence 458999999975 34433333346777999998 443 346789999987753
No 191
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=52.50 E-value=19 Score=26.18 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040159 22 LGVIAGFMMVATYHCIS 38 (176)
Q Consensus 22 i~il~~~~vl~~~~~i~ 38 (176)
+++++++++....+.++
T Consensus 107 l~il~~i~is~~~~~~y 123 (139)
T PHA03099 107 VLVLVGIIITCCLLSVY 123 (139)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33333444443333333
No 192
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=51.41 E-value=21 Score=20.38 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=15.9
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHH
Q 040159 7 GHQPGLQFSPLLIGLLGVIAGFMMVAT 33 (176)
Q Consensus 7 ~~~~~~~~~~~~i~~i~il~~~~vl~~ 33 (176)
+..+....+|..++++++.++++++++
T Consensus 11 ed~~giki~P~~Vl~~si~fi~~V~~L 37 (41)
T PF03911_consen 11 EDAPGIKIDPKTVLIISIAFIAIVILL 37 (41)
T ss_dssp --S-SS-BSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCcceeCCeehHHHHHHHHHHHHHH
Confidence 344567788888877777766665543
No 194
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=7.9 Score=33.24 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=32.1
Q ss_pred cccccccccccCCC-eeeEcCCCCCccCHHHHHHHHhcCCCCccc
Q 040159 99 DTCAVCLGDFKEGE-QVRVLPECLHLFHVPCIDMWLSSHSNCPLC 142 (176)
Q Consensus 99 ~~C~ICl~~~~~~~-~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C 142 (176)
..|+.|.-.++... ...+.-.|||.|+-.|...|...+..|.-|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 46888888776443 333332489999999999999888877554
No 195
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=51.19 E-value=14 Score=19.29 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=10.2
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHH
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCI 129 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci 129 (176)
.|.+|-+....+-...-.. |.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~-Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSE-CDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TT-T-----HHHH
T ss_pred cCCcCCCcCCCCceEECcc-CCCccChhcC
Confidence 4778888766533444444 9999999985
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=50.80 E-value=25 Score=29.54 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=33.7
Q ss_pred cccccccccccCCCeeeEcC-CCCCccCHHHHHHHHhcCCCCccccccccCCC
Q 040159 99 DTCAVCLGDFKEGEQVRVLP-ECLHLFHVPCIDMWLSSHSNCPLCRANANAAP 150 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~ 150 (176)
..|+||-+.....+ --.+| .|++..|..|...-...+..||.||.+.....
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 58999998764333 23444 25666666666666666788999997764433
No 197
>PLN02400 cellulose synthase
Probab=49.99 E-value=20 Score=34.83 Aligned_cols=51 Identities=24% Similarity=0.571 Sum_probs=34.3
Q ss_pred CCccccccccccc---CCCeeeEcCCCCCccCHHHHHHHH--hcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFK---EGEQVRVLPECLHLFHVPCIDMWL--SSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~---~~~~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~CR~~~~~ 148 (176)
+...|.||-+++- +++.....-.|+--.|..|. ++= ..++.||.|+....+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCcccc
Confidence 3458999999975 34433322246666999998 333 346789999988754
No 198
>PRK00523 hypothetical protein; Provisional
Probab=49.89 E-value=38 Score=21.99 Aligned_cols=24 Identities=13% Similarity=-0.223 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 040159 19 IGLLGVIAGFMMVATYHCISLGCC 42 (176)
Q Consensus 19 i~~i~il~~~~vl~~~~~i~~~~c 42 (176)
.+++++++.++-+++-|++.++|.
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~ 30 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555544
No 199
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=48.42 E-value=32 Score=19.17 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC
Q 040159 22 LGVIAGFMMVATYHCISLGCCCCN 45 (176)
Q Consensus 22 i~il~~~~vl~~~~~i~~~~c~~r 45 (176)
.+++++.+-+.+.-.++..|.+.|
T Consensus 7 ~GiVLGlipiTl~GlfvaAylQYr 30 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWNQYK 30 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444433
No 200
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=47.97 E-value=3.3 Score=34.14 Aligned_cols=37 Identities=24% Similarity=0.683 Sum_probs=30.4
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS 137 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~ 137 (176)
.|.+|+++|..+....... |.-+||..|+-.|+....
T Consensus 216 vC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 8999999998766666665 766999999999997654
No 201
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=47.89 E-value=34 Score=24.38 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhcCC
Q 040159 30 MVATYHCISLGCCCCN 45 (176)
Q Consensus 30 vl~~~~~i~~~~c~~r 45 (176)
..+..+.+..|+||+.
T Consensus 99 aamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 99 AAMGAGALLRRCCRRA 114 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555656543
No 202
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=47.87 E-value=31 Score=19.20 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC
Q 040159 22 LGVIAGFMMVATYHCISLGCCCCN 45 (176)
Q Consensus 22 i~il~~~~vl~~~~~i~~~~c~~r 45 (176)
.+++++.+.+.+.-.++..|.+.|
T Consensus 7 ~GiVLGlipvTl~GlfvaAylQYr 30 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYLQYR 30 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444433
No 203
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=47.80 E-value=20 Score=26.19 Aligned_cols=12 Identities=0% Similarity=-0.402 Sum_probs=4.6
Q ss_pred HHHHHHHHhhhc
Q 040159 32 ATYHCISLGCCC 43 (176)
Q Consensus 32 ~~~~~i~~~~c~ 43 (176)
++++..++++.+
T Consensus 36 ~~~~~~~r~~~~ 47 (146)
T PF14316_consen 36 LLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHc
Confidence 333333434333
No 204
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=47.01 E-value=53 Score=21.70 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 040159 17 LLIGLLGVIAGFMMVATYHCISLGCCCC 44 (176)
Q Consensus 17 ~~i~~i~il~~~~vl~~~~~i~~~~c~~ 44 (176)
..-.+.+++++=+++.+++.....||-+
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445556666666666666666666644
No 205
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=47.00 E-value=52 Score=24.66 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=7.7
Q ss_pred CCCCCCCCCCch
Q 040159 5 GAGHQPGLQFSP 16 (176)
Q Consensus 5 ~~~~~~~~~~~~ 16 (176)
-++|.+.+++.+
T Consensus 5 ~~~~~~~l~~~~ 16 (173)
T PRK13460 5 AAKGLSLLDVNP 16 (173)
T ss_pred ccCCCCccCCcH
Confidence 356667777765
No 206
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.92 E-value=45 Score=25.96 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=3.7
Q ss_pred CCCCCCc
Q 040159 9 QPGLQFS 15 (176)
Q Consensus 9 ~~~~~~~ 15 (176)
-+.++++
T Consensus 44 ~p~~~~~ 50 (204)
T PRK09174 44 FPPFDST 50 (204)
T ss_pred CCCCcch
Confidence 4555554
No 207
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=45.87 E-value=37 Score=27.50 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 040159 32 ATYHCIS 38 (176)
Q Consensus 32 ~~~~~i~ 38 (176)
++|+++.
T Consensus 215 ~~Y~i~g 221 (268)
T PF09451_consen 215 AAYLIFG 221 (268)
T ss_pred HHHhhhh
Confidence 3344433
No 208
>PHA03054 IMV membrane protein; Provisional
Probab=44.86 E-value=36 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=8.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 040159 13 QFSPLLIGLLGVIAGFMMVATY 34 (176)
Q Consensus 13 ~~~~~~i~~i~il~~~~vl~~~ 34 (176)
.+..++++++.++++++++++|
T Consensus 47 ~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 47 GWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433334334444433
No 209
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=44.70 E-value=51 Score=20.21 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=18.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040159 13 QFSPLLIGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 13 ~~~~~~i~~i~il~~~~vl~~~~~i~~ 39 (176)
+.++.-+++.+++.++++++.++.+..
T Consensus 27 ~~~p~~~Ii~gii~~~~fV~~Lv~lV~ 53 (56)
T PF11174_consen 27 QGSPVHFIIVGIILAALFVAGLVLLVN 53 (56)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888777777766666553
No 210
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.44 E-value=14 Score=29.88 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=27.3
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS 134 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~ 134 (176)
=+.|+.||.-+.++ .+.| =||+|...||-+++.
T Consensus 43 FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 35899999999877 5566 799999999988763
No 211
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=44.42 E-value=7.4 Score=33.45 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=0.0
Q ss_pred CcccccccccccC----------------CCeeeEcCCCCCccCHHHHHHHHhc---------CCCCcccccccc
Q 040159 98 EDTCAVCLGDFKE----------------GEQVRVLPECLHLFHVPCIDMWLSS---------HSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~----------------~~~~~~l~~C~H~fH~~Ci~~wl~~---------~~~CP~CR~~~~ 147 (176)
..+|++|+..=.- .-....-| |||+-=.....-|-+. +..||.|-.+|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 5589999965211 11445677 9999888888888644 235999988874
No 212
>PRK14762 membrane protein; Provisional
Probab=44.25 E-value=45 Score=17.00 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040159 18 LIGLLGVIAGFMMVATY 34 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~ 34 (176)
+++.+++++++++++..
T Consensus 6 w~i~iifligllvvtgv 22 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 213
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=44.08 E-value=12 Score=23.33 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=9.7
Q ss_pred CCCCccccccccC
Q 040159 136 HSNCPLCRANANA 148 (176)
Q Consensus 136 ~~~CP~CR~~~~~ 148 (176)
...||+|.++...
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 3569999988743
No 214
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=43.96 E-value=55 Score=23.18 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=10.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 040159 14 FSPLLIGLLGVIAGFMMVATYHCI 37 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~~i 37 (176)
.+.+++.+++++++.+.++.+.++
T Consensus 60 ~~lffvglii~LivSLaLVsFvIF 83 (128)
T PF15145_consen 60 RSLFFVGLIIVLIVSLALVSFVIF 83 (128)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333
No 215
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=43.66 E-value=7.5 Score=23.39 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=5.2
Q ss_pred CCcccccccc
Q 040159 138 NCPLCRANAN 147 (176)
Q Consensus 138 ~CP~CR~~~~ 147 (176)
.||+|.+++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7999998873
No 216
>PHA02902 putative IMV membrane protein; Provisional
Probab=43.30 E-value=85 Score=19.91 Aligned_cols=9 Identities=0% Similarity=-0.367 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 040159 33 TYHCISLGC 41 (176)
Q Consensus 33 ~~~~i~~~~ 41 (176)
++|..++|+
T Consensus 19 liya~YrR~ 27 (70)
T PHA02902 19 LIYAAYKRY 27 (70)
T ss_pred HHHHHHHHh
Confidence 333444443
No 217
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.91 E-value=63 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.001 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 040159 21 LLGVIAGFMMVATYHCISLGC 41 (176)
Q Consensus 21 ~i~il~~~~vl~~~~~i~~~~ 41 (176)
++++++.++.+++-|++.+++
T Consensus 8 l~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555553
No 218
>PF14851 FAM176: FAM176 family
Probab=42.77 E-value=71 Score=23.85 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 16 PLLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 16 ~~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
..+|++.+|.+++++.+.++++..-
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~ris 46 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRIS 46 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 3456666666665555555544433
No 219
>PHA02819 hypothetical protein; Provisional
Probab=42.69 E-value=41 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=10.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHH
Q 040159 12 LQFSPLLIGLLGVIAGFMMVATYH 35 (176)
Q Consensus 12 ~~~~~~~i~~i~il~~~~vl~~~~ 35 (176)
..+..++++++.++++++++++|+
T Consensus 44 ~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 220
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=42.58 E-value=33 Score=22.96 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040159 17 LLIGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 17 ~~i~~i~il~~~~vl~~~~~i~~ 39 (176)
++|.|.+.+++++++++++..+.
T Consensus 38 IVI~FWv~LA~FV~~lF~iL~~m 60 (90)
T PF15183_consen 38 IVIAFWVSLAAFVVFLFLILLYM 60 (90)
T ss_pred eehhHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444444444443
No 221
>PF15069 FAM163: FAM163 family
Probab=42.17 E-value=63 Score=23.83 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhcCCC
Q 040159 30 MVATYHCISLGCCCCNN 46 (176)
Q Consensus 30 vl~~~~~i~~~~c~~r~ 46 (176)
++++.|+-+-.||+++.
T Consensus 22 IaVLCYCRLQYYCCKK~ 38 (143)
T PF15069_consen 22 IAVLCYCRLQYYCCKKN 38 (143)
T ss_pred HHHHHHHhhHHHHhhcc
Confidence 33444444444455543
No 222
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=41.72 E-value=83 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=13.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 14 FSPLLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
|.+++|-++++++++-+++.+++.+++
T Consensus 18 WeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 18 WEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555455444444443
No 223
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=41.40 E-value=17 Score=29.48 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=32.1
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC--CCcccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS--NCPLCRAN 145 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~CR~~ 145 (176)
..|+|=...+..+ .+...|||+|=.+=|...+.... .||+=-.+
T Consensus 177 ~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 3799887777755 33345999999999999987644 48875333
No 224
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.24 E-value=9.7 Score=31.57 Aligned_cols=50 Identities=26% Similarity=0.654 Sum_probs=39.8
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
...+.|.||...+.-.. +.- .|.|.|...|...|......||.|+.-..+
T Consensus 103 ~~~~~~~~~~g~l~vpt--~~q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPT--RIQ-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecc--ccc-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 45568999999887542 222 499999999999999999999999886644
No 225
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=41.23 E-value=34 Score=26.98 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040159 15 SPLLIGLLGVIAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 15 ~~~~i~~i~il~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
.+++|++.++.+.-++++++-.++.-+|++..+
T Consensus 52 ~IliYcVTg~sllsli~VtvaalYsSC~~~pg~ 84 (235)
T PF11359_consen 52 AILIYCVTGFSLLSLIVVTVAALYSSCCRRPGR 84 (235)
T ss_pred hhheeeehhHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 456666677777777777777777775554433
No 226
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=41.18 E-value=69 Score=22.59 Aligned_cols=30 Identities=7% Similarity=-0.052 Sum_probs=21.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040159 10 PGLQFSPLLIGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 10 ~~~~~~~~~i~~i~il~~~~vl~~~~~i~~ 39 (176)
++..++....++.+++++++++..+++...
T Consensus 74 ~eg~w~~~~~iFt~~i~vivvvGS~Wvm~~ 103 (111)
T COG3125 74 SEGRWNMGALIFTIFIIVIVVVGSIWVMHN 103 (111)
T ss_pred cccceehHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344577778888888777777777776654
No 227
>PLN02195 cellulose synthase A
Probab=41.15 E-value=33 Score=33.06 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=34.1
Q ss_pred CcccccccccccC---CCeeeEcCCCCCccCHHHHHHHHh--cCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKE---GEQVRVLPECLHLFHVPCIDMWLS--SHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~---~~~~~~l~~C~H~fH~~Ci~~wl~--~~~~CP~CR~~~~ 147 (176)
...|.||-+++.. ++.....-.|+--.|+.|. .+-+ .++.||.|+....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 4579999997753 4433333348888999998 4433 3677999988774
No 228
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=41.02 E-value=3.7 Score=30.63 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.5
Q ss_pred hhhcCCCC
Q 040159 40 GCCCCNNN 47 (176)
Q Consensus 40 ~~c~~r~~ 47 (176)
.+|.++++
T Consensus 72 ~~c~r~kk 79 (154)
T PF04478_consen 72 IFCIRRKK 79 (154)
T ss_pred eEEEeccc
Confidence 34444444
No 229
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=40.95 E-value=62 Score=18.11 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 040159 23 GVIAGFMMVATYHCISLGCC 42 (176)
Q Consensus 23 ~il~~~~vl~~~~~i~~~~c 42 (176)
+++++.+.+.+.-.++..|.
T Consensus 8 GiVlGli~vtl~Glfv~Ay~ 27 (37)
T PF02529_consen 8 GIVLGLIPVTLAGLFVAAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHH
Confidence 33333333333333333343
No 230
>PRK05978 hypothetical protein; Provisional
Probab=40.83 E-value=19 Score=26.79 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=20.2
Q ss_pred CCccCHHHHHHHHhcCCCCccccccccCCCC
Q 040159 121 LHLFHVPCIDMWLSSHSNCPLCRANANAAPP 151 (176)
Q Consensus 121 ~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 151 (176)
|+.|+ .+++.+..||.|-.++...+.
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCCc
Confidence 57786 788889999999888855443
No 231
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=40.59 E-value=10 Score=27.39 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=1.9
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 040159 14 FSPLLIGLLGVIAGFMMVAT 33 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~ 33 (176)
|..+..+..+++..++++.+
T Consensus 75 ~~l~~pi~~sal~v~lVl~l 94 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLAL 94 (129)
T ss_dssp SSSS----------------
T ss_pred cceehhhhhhHHHHHHHHHH
Confidence 44444444455444444443
No 232
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=40.39 E-value=29 Score=33.66 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=35.0
Q ss_pred CCcccccccccccC---CCeeeEcCCCCCccCHHHHHHHH-hcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKE---GEQVRVLPECLHLFHVPCIDMWL-SSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~CR~~~~~ 148 (176)
....|.||-++... ++.....-.|+--.|..|.+-=. ..++.||.|+....+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 34579999998753 44333333477779999993322 346779999988754
No 233
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=40.35 E-value=68 Score=27.94 Aligned_cols=23 Identities=0% Similarity=-0.054 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 040159 19 IGLLGVIAGFMMVATYHCISLGC 41 (176)
Q Consensus 19 i~~i~il~~~~vl~~~~~i~~~~ 41 (176)
-+|+++++++++.++.++++.++
T Consensus 69 gFfvaflvslVL~~l~~f~l~r~ 91 (429)
T PF12297_consen 69 GFFVAFLVSLVLTWLCFFLLART 91 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 234
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=39.88 E-value=64 Score=21.59 Aligned_cols=8 Identities=0% Similarity=0.077 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 040159 19 IGLLGVIA 26 (176)
Q Consensus 19 i~~i~il~ 26 (176)
+++.++++
T Consensus 38 LVic~~lV 45 (84)
T PF06143_consen 38 LVICCFLV 45 (84)
T ss_pred HHHHHHHH
Confidence 33333333
No 235
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=39.69 E-value=34 Score=22.86 Aligned_cols=34 Identities=6% Similarity=0.089 Sum_probs=16.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040159 14 FSPLLIGLLGVIAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
+.++++.+++...+.++++.+......||.|.+-
T Consensus 12 lp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred CCceeeHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 3444555555444444444444344555555443
No 236
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=39.60 E-value=3.1 Score=34.07 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=20.0
Q ss_pred CcccccccccccCCCeeeEcC--CCCCccCHHHHHHHHhcCCCCccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLP--ECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~--~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
...|+||-..-.-+ .++... .=.|.+|.-|-..|-.....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 46899998764322 111110 01355777888899878889999954
No 237
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=39.35 E-value=26 Score=24.77 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=10.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 040159 14 FSPLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
|-.-+++.+++-++++.++++.++.
T Consensus 63 ffvglii~LivSLaLVsFvIFLiiQ 87 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLIIQ 87 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheee
Confidence 3333444444444444444444443
No 238
>PRK09040 hypothetical protein; Provisional
Probab=39.34 E-value=49 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.2
Q ss_pred CCCCchHHHHHHHHHHHHHHH
Q 040159 11 GLQFSPLLIGLLGVIAGFMMV 31 (176)
Q Consensus 11 ~~~~~~~~i~~i~il~~~~vl 31 (176)
+..+++++..++.+++.+++.
T Consensus 15 W~s~sDLMs~Lm~iFlli~v~ 35 (214)
T PRK09040 15 WAVFGDLMSVLLGAFVLILVG 35 (214)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 667788888777777666653
No 239
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=38.77 E-value=26 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCcccccccccccCCCeee--EcCCCCCccCHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVR--VLPECLHLFHVPCIDM 131 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~--~l~~C~H~fH~~Ci~~ 131 (176)
....|.||... .|..+. .. .|...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~-~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHP-GCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCC-CCCcCCCHHHHHH
Confidence 35689999987 332222 22 3888999999755
No 240
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=37.87 E-value=19 Score=32.98 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=9.7
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhcC
Q 040159 22 LGVIAGFM-MVATYHCISLGCCCC 44 (176)
Q Consensus 22 i~il~~~~-vl~~~~~i~~~~c~~ 44 (176)
+++++.++ +++++++++..+|++
T Consensus 273 ~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 273 AGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred ehHhHHHHHHHHHHHHHHHHHhcc
Confidence 34433333 334444444444543
No 241
>PF15018 InaF-motif: TRP-interacting helix
Probab=37.87 E-value=46 Score=18.82 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 040159 16 PLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 16 ~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
..+..+.++.++++++.++++++
T Consensus 9 tV~~Yl~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 9 TVVAYLFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHhee
Confidence 34555566666677777776654
No 242
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=37.58 E-value=37 Score=25.20 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 040159 18 LIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
..++++|.+.++++++++.++.+
T Consensus 32 ~tILiaIvVliiiiivli~lcss 54 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSS 54 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444333333333
No 243
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=37.51 E-value=1.9e+02 Score=22.68 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 040159 16 PLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 16 ~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
..+|.++++.+.+++-.+.+++.
T Consensus 64 WvLY~VI~VSaaVIagAVPlLLR 86 (207)
T PF10812_consen 64 WVLYAVIGVSAAVIAGAVPLLLR 86 (207)
T ss_pred EeehHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 244
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.47 E-value=21 Score=29.79 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCcccccccccccCCCeeeE--cCCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRV--LPECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~--l~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
....|++|-..-... .++. ...=.|.+|.-|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 356899998763211 0111 0011355667788889888889999964
No 245
>PHA03164 hypothetical protein; Provisional
Probab=37.36 E-value=40 Score=22.13 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 040159 27 GFMMVATYHCISL 39 (176)
Q Consensus 27 ~~~vl~~~~~i~~ 39 (176)
++.+++++|+++.
T Consensus 68 IamILfiifvlyv 80 (88)
T PHA03164 68 IAMILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHHHHh
Confidence 3333444444443
No 246
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=47 Score=30.70 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=33.5
Q ss_pred ccccccccccCCCeeeEcCCCCC-ccCHHHHHHHHh--c----CCCCccccccccCCCC
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLH-LFHVPCIDMWLS--S----HSNCPLCRANANAAPP 151 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H-~fH~~Ci~~wl~--~----~~~CP~CR~~~~~~~~ 151 (176)
.|+||-..+. ....- .||| ..+..|...... . ...||+||..+....-
T Consensus 2 ~c~ic~~s~~---~~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~ 56 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSN 56 (669)
T ss_pred CcceeecCcc---ccccc-cccccccchhhhhhhhhhcccccccccCcccccceeeecc
Confidence 5999988754 33444 4999 889999877642 2 3348999997755444
No 247
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=37.17 E-value=18 Score=29.04 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.7
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCC--Ccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSN--CPL 141 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~--CP~ 141 (176)
+..|+|-+..+..+ .+..+|+|.|-.+-|...++...+ ||.
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 34799988877644 344469999999999999986544 664
No 248
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=36.99 E-value=63 Score=27.94 Aligned_cols=11 Identities=27% Similarity=0.923 Sum_probs=4.9
Q ss_pred HHHhhhcCCCC
Q 040159 37 ISLGCCCCNNN 47 (176)
Q Consensus 37 i~~~~c~~r~~ 47 (176)
+..++|+|+++
T Consensus 41 l~~~CC~r~~~ 51 (406)
T PF04906_consen 41 LICRCCCRRPR 51 (406)
T ss_pred HHHHhhCCCCC
Confidence 33344555443
No 249
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=36.89 E-value=37 Score=27.38 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=8.2
Q ss_pred HHHHHHHHhcCCC
Q 040159 126 VPCIDMWLSSHSN 138 (176)
Q Consensus 126 ~~Ci~~wl~~~~~ 138 (176)
.+=.+.|+.....
T Consensus 213 ~~~f~~W~~~~~~ 225 (247)
T COG1622 213 QEDFDAWVAEVKA 225 (247)
T ss_pred HHHHHHHHHhhhh
Confidence 3448889875443
No 250
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=36.38 E-value=61 Score=26.20 Aligned_cols=28 Identities=0% Similarity=-0.185 Sum_probs=11.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040159 11 GLQFSPLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 11 ~~~~~~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
...+..+..+|+++++++++-+++-.++
T Consensus 197 ~~~~g~f~wl~i~~~l~~~~Y~i~g~~~ 224 (268)
T PF09451_consen 197 SGGWGFFTWLFIILFLFLAAYLIFGSWY 224 (268)
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhhhe
Confidence 3444544433333333334333333333
No 251
>PHA03164 hypothetical protein; Provisional
Probab=36.37 E-value=62 Score=21.25 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 040159 16 PLLIGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 16 ~~~i~~i~il~~~~vl~~~~~i~~ 39 (176)
.+++.-++|..+++++++++++-.
T Consensus 60 FlvLtgLaIamILfiifvlyvFnV 83 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFVLYVFNV 83 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHheee
Confidence 333444444444444444444433
No 252
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.26 E-value=5.6 Score=32.46 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=35.3
Q ss_pred cccccccccccCC--CeeeEcCC--------CCCccCHHHHHHHHhc-CCCCcccccc
Q 040159 99 DTCAVCLGDFKEG--EQVRVLPE--------CLHLFHVPCIDMWLSS-HSNCPLCRAN 145 (176)
Q Consensus 99 ~~C~ICl~~~~~~--~~~~~l~~--------C~H~fH~~Ci~~wl~~-~~~CP~CR~~ 145 (176)
..|.||...|... ..+..... |+|..+..|++.-+.. ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 4799999999832 22222224 9999999999998754 4679999874
No 253
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.08 E-value=34 Score=30.84 Aligned_cols=12 Identities=0% Similarity=0.268 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 040159 20 GLLGVIAGFMMV 31 (176)
Q Consensus 20 ~~i~il~~~~vl 31 (176)
++++++++++++
T Consensus 5 ~ii~i~ii~i~~ 16 (569)
T PRK04778 5 LIIAIVVIIIIA 16 (569)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 254
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.06 E-value=47 Score=20.49 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040159 16 PLLIGLLGVIAGFMMVA 32 (176)
Q Consensus 16 ~~~i~~i~il~~~~vl~ 32 (176)
..+++++++++++++.+
T Consensus 20 l~l~il~~f~~G~llg~ 36 (68)
T PF06305_consen 20 LGLLILIAFLLGALLGW 36 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 255
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=35.45 E-value=72 Score=23.21 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 040159 14 FSPLLIGLLGVIAGFMMVATYHCISLGCCCCNNNQ 48 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~~i~~~~c~~r~~~ 48 (176)
...-.+.+.+++++.+.+++..+++..||.-|++.
T Consensus 96 ~~t~Yia~~~il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 96 TTTSYIPSPGIVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhhheeeeccc
Confidence 33444556666666666677777777766555443
No 256
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=34.87 E-value=26 Score=21.83 Aligned_cols=12 Identities=50% Similarity=1.132 Sum_probs=8.7
Q ss_pred CCCCcccccccc
Q 040159 136 HSNCPLCRANAN 147 (176)
Q Consensus 136 ~~~CP~CR~~~~ 147 (176)
+..||+|+..++
T Consensus 2 k~~CPlCkt~~n 13 (61)
T PF05715_consen 2 KSLCPLCKTTLN 13 (61)
T ss_pred CccCCcccchhh
Confidence 456888888773
No 257
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=34.67 E-value=6.2 Score=27.91 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhhcCCC
Q 040159 40 GCCCCNN 46 (176)
Q Consensus 40 ~~c~~r~ 46 (176)
.||+||.
T Consensus 45 WYckRRS 51 (118)
T PF14991_consen 45 WYCKRRS 51 (118)
T ss_dssp -------
T ss_pred eeeeecc
Confidence 4455443
No 258
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=34.43 E-value=54 Score=21.87 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 040159 28 FMMVATYHCIS 38 (176)
Q Consensus 28 ~~vl~~~~~i~ 38 (176)
+++++++|++.
T Consensus 79 ~f~~~v~yI~~ 89 (92)
T PF03908_consen 79 FFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHhh
Confidence 33334444444
No 259
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=34.20 E-value=63 Score=21.47 Aligned_cols=13 Identities=8% Similarity=-0.179 Sum_probs=3.0
Q ss_pred HHHH-HHHHHHHHh
Q 040159 28 FMMV-ATYHCISLG 40 (176)
Q Consensus 28 ~~vl-~~~~~i~~~ 40 (176)
++++ .+.|.-+++
T Consensus 19 aIvvW~iv~ieYrk 32 (81)
T PF00558_consen 19 AIVVWTIVYIEYRK 32 (81)
T ss_dssp HHHHHHHH------
T ss_pred HHHHHHHHHHHHHH
Confidence 4444 444555544
No 260
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=34.03 E-value=72 Score=25.51 Aligned_cols=30 Identities=17% Similarity=0.064 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 040159 19 IGLLGVIAGFMMVATYHCISLGCCCCNNNQ 48 (176)
Q Consensus 19 i~~i~il~~~~vl~~~~~i~~~~c~~r~~~ 48 (176)
+++.++++.+++.+..|.++-.|.-.|+..
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C~k~d 218 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMCWKTD 218 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 444455555555566666666666555543
No 261
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=33.98 E-value=42 Score=27.90 Aligned_cols=7 Identities=0% Similarity=-0.429 Sum_probs=2.9
Q ss_pred hhhcCCC
Q 040159 40 GCCCCNN 46 (176)
Q Consensus 40 ~~c~~r~ 46 (176)
..+|.|+
T Consensus 277 LILRYRR 283 (299)
T PF02009_consen 277 LILRYRR 283 (299)
T ss_pred HHHHHHH
Confidence 3444443
No 262
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=33.88 E-value=50 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=13.0
Q ss_pred CCCCchHHHHHHHHHHHHHHH-HHHHHHHHhhhc
Q 040159 11 GLQFSPLLIGLLGVIAGFMMV-ATYHCISLGCCC 43 (176)
Q Consensus 11 ~~~~~~~~i~~i~il~~~~vl-~~~~~i~~~~c~ 43 (176)
.+....-.+-+.+++++++++ +.++++....|+
T Consensus 6 pF~YDy~tLrigGLi~A~vlfi~Gi~iils~kck 39 (50)
T PF02038_consen 6 PFYYDYETLRIGGLIFAGVLFILGILIILSGKCK 39 (50)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred CCccchhHhhccchHHHHHHHHHHHHHHHcCccc
Confidence 333333333444444333333 333344444443
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.59 E-value=36 Score=31.93 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=29.1
Q ss_pred CcccccccccccC----C-----CeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 98 EDTCAVCLGDFKE----G-----EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~----~-----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
+..|+-|...|-. | ...-+.|.|+|.-|..=|.. .+.||+|...+
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 3467777766632 1 12234557999988877643 57899997654
No 264
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=33.04 E-value=90 Score=26.52 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 17 LLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 17 ~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
++.+++++++++++++.+++++.+
T Consensus 5 ~l~~l~~~l~g~~~a~g~~~~y~~ 28 (420)
T KOG2096|consen 5 SLPILIGGLVGFVTVMGVAIIYVA 28 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhee
Confidence 456677777777777777666644
No 265
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=32.50 E-value=31 Score=22.62 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=21.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHH
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDM 131 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~ 131 (176)
...|.+|....-.......- .|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~-~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHP-GCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCC-CCCcEEChHHHcc
Confidence 45799998763222233333 4999999999744
No 266
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=32.31 E-value=23 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=17.0
Q ss_pred CCCccCHHHHHHHHhc---CCCCccccccc
Q 040159 120 CLHLFHVPCIDMWLSS---HSNCPLCRANA 146 (176)
Q Consensus 120 C~H~fH~~Ci~~wl~~---~~~CP~CR~~~ 146 (176)
|.|.||..=+...-.. ...||.|..-.
T Consensus 195 C~~C~hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 195 CPQCHHHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred cccccccccccccccccchheecccchhhc
Confidence 7777776655444332 34599997644
No 267
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=32.23 E-value=78 Score=17.88 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=16.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040159 12 LQFSPLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 12 ~~~~~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
..++.+++-+++++.-++.++++++..
T Consensus 8 s~LPsI~VPlVGlvfPai~Mallf~yI 34 (38)
T PRK11877 8 SWLPWIFVPLVGWVFPAVFMVLLGRYI 34 (38)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777776666666665543
No 268
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=32.03 E-value=1e+02 Score=22.98 Aligned_cols=9 Identities=11% Similarity=-0.075 Sum_probs=3.3
Q ss_pred CCCchHHHH
Q 040159 12 LQFSPLLIG 20 (176)
Q Consensus 12 ~~~~~~~i~ 20 (176)
+.+...++|
T Consensus 5 ~~~~~~~~w 13 (167)
T PRK14475 5 FNLSNPEFW 13 (167)
T ss_pred CCCCchHHH
Confidence 334333333
No 269
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=31.84 E-value=25 Score=31.78 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=24.2
Q ss_pred CCCcccccccccccC-----------CCeeeEcCCCCCccCHHHHHHH
Q 040159 96 CNEDTCAVCLGDFKE-----------GEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
.....|+||.+.|+. .+.|.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 345689999999974 2223322 4789999998764
No 270
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=31.75 E-value=1.4e+02 Score=21.46 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=4.6
Q ss_pred CCCchHHHHHH
Q 040159 12 LQFSPLLIGLL 22 (176)
Q Consensus 12 ~~~~~~~i~~i 22 (176)
..|+..++++.
T Consensus 33 tpWNysiL~Ls 43 (125)
T PF15048_consen 33 TPWNYSILALS 43 (125)
T ss_pred CCcchHHHHHH
Confidence 44444444333
No 271
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=31.69 E-value=21 Score=25.10 Aligned_cols=45 Identities=29% Similarity=0.511 Sum_probs=27.4
Q ss_pred CCcccccccccccC--CCeeeEcCCCCCccCHHHHHHHHhcCC---CCccccc
Q 040159 97 NEDTCAVCLGDFKE--GEQVRVLPECLHLFHVPCIDMWLSSHS---NCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~~~~--~~~~~~l~~C~H~fH~~Ci~~wl~~~~---~CP~CR~ 144 (176)
++..|++|...|.. +.. ..-..|+|.++..|-.. ..+. .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-RVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-EEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCC-CcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 56689999998753 223 44445999999999644 2112 2877754
No 272
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=31.45 E-value=27 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.606 Sum_probs=14.3
Q ss_pred ccccccccccCCC-eeeEcCCCCCcc
Q 040159 100 TCAVCLGDFKEGE-QVRVLPECLHLF 124 (176)
Q Consensus 100 ~C~ICl~~~~~~~-~~~~l~~C~H~f 124 (176)
.|+-|-.+|.-.+ ...+.|.|+|-+
T Consensus 4 ~CP~C~seytY~dg~~~iCpeC~~EW 29 (109)
T TIGR00686 4 PCPKCNSEYTYHDGTQLICPSCLYEW 29 (109)
T ss_pred cCCcCCCcceEecCCeeECccccccc
Confidence 4788877775332 334445566653
No 273
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.42 E-value=1.1e+02 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040159 15 SPLLIGLLGVIAGFMMVATYHCISLGC 41 (176)
Q Consensus 15 ~~~~i~~i~il~~~~vl~~~~~i~~~~ 41 (176)
.-.+|+++++.+++++.+++-.+..+.
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455566666655555555555555553
No 274
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=30.58 E-value=37 Score=26.18 Aligned_cols=8 Identities=13% Similarity=0.077 Sum_probs=5.1
Q ss_pred HHHHHHHH
Q 040159 126 VPCIDMWL 133 (176)
Q Consensus 126 ~~Ci~~wl 133 (176)
..-+..||
T Consensus 126 G~~~R~~L 133 (186)
T PF07406_consen 126 GENFRSYL 133 (186)
T ss_pred cccHHHHH
Confidence 55566676
No 275
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=30.28 E-value=99 Score=16.81 Aligned_cols=8 Identities=13% Similarity=-0.251 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 040159 20 GLLGVIAG 27 (176)
Q Consensus 20 ~~i~il~~ 27 (176)
+.++.+++
T Consensus 12 ~y~Ip~v~ 19 (33)
T TIGR03068 12 IYAIPVAS 19 (33)
T ss_pred hhHHHHHH
Confidence 33333333
No 276
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.11 E-value=80 Score=21.88 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=18.6
Q ss_pred CCccCHHHHHHHHhc---------CCCCcccccc
Q 040159 121 LHLFHVPCIDMWLSS---------HSNCPLCRAN 145 (176)
Q Consensus 121 ~H~fH~~Ci~~wl~~---------~~~CP~CR~~ 145 (176)
.=.|+..|+..++.. +-.||.||.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999887643 2349999873
No 277
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.91 E-value=15 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=14.0
Q ss_pred eeeEcCCCCCccCHHHHHHH
Q 040159 113 QVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 113 ~~~~l~~C~H~fH~~Ci~~w 132 (176)
....-+.|+|.|+..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34444348999988887776
No 278
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=29.84 E-value=98 Score=22.62 Aligned_cols=21 Identities=29% Similarity=0.134 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040159 18 LIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i~ 38 (176)
+++.+.+++.+++++.+|++.
T Consensus 4 lyIs~~iiAiAf~vL~I~li~ 24 (139)
T COG4768 4 LYISLAIIAIAFLVLVIYLII 24 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 279
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=29.40 E-value=22 Score=29.64 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=28.8
Q ss_pred CcccccccccccCCCeeeEc---CCCCCccCHHHHHHHHhcCCCCccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVL---PECLHLFHVPCIDMWLSSHSNCPLCRA 144 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l---~~C~H~fH~~Ci~~wl~~~~~CP~CR~ 144 (176)
...|++|-..-... .++.. ..=.|.+|.-|-..|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45899998763211 11110 001245667788889888889999965
No 280
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=28.93 E-value=19 Score=21.51 Aligned_cols=38 Identities=32% Similarity=0.611 Sum_probs=20.2
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh--cCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS--SHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~--~~~~CP~CR~~~ 146 (176)
...|+.|-+.|... .| + ..|.+.-.. +...||+|...+
T Consensus 2 ~f~CP~C~~~~~~~----~L--~-----~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL--V-----EHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHH----HH--H-----HHHHhHCcCCCCCccCCCchhhh
Confidence 34689998865433 22 2 223333222 234599997643
No 281
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=28.64 E-value=1e+02 Score=16.34 Aligned_cols=10 Identities=0% Similarity=-0.300 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 040159 16 PLLIGLLGVI 25 (176)
Q Consensus 16 ~~~i~~i~il 25 (176)
..+.++++++
T Consensus 8 a~i~ly~~l~ 17 (29)
T TIGR03063 8 AQIGLYAVLF 17 (29)
T ss_pred hhHHHHHHHH
Confidence 3334444433
No 282
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.20 E-value=34 Score=21.69 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=11.6
Q ss_pred CchHHHHHHHHHHHHHH-HHHHHHHHH
Q 040159 14 FSPLLIGLLGVIAGFMM-VATYHCISL 39 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~v-l~~~~~i~~ 39 (176)
+++-+|+++++...+++ ++.-|.++.
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY~ 36 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLYV 36 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHHH
Confidence 55555555444433333 333444443
No 283
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=28.16 E-value=1.6e+02 Score=21.35 Aligned_cols=12 Identities=17% Similarity=-0.349 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 040159 18 LIGLLGVIAGFM 29 (176)
Q Consensus 18 ~i~~i~il~~~~ 29 (176)
+++++++.+..+
T Consensus 45 lYIL~vmgfFgf 56 (129)
T PF02060_consen 45 LYILVVMGFFGF 56 (129)
T ss_dssp -HHHHHHHHHHH
T ss_pred ehHHHHHHHHHH
Confidence 444433333333
No 284
>PF15013 CCSMST1: CCSMST1 family
Probab=27.84 E-value=41 Score=22.15 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040159 19 IGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 19 i~~i~il~~~~vl~~~~~i~~ 39 (176)
+-.+.+.+.+++++++|++++
T Consensus 31 yq~~~is~sl~~fliyFC~lR 51 (77)
T PF15013_consen 31 YQVYPISLSLAAFLIYFCFLR 51 (77)
T ss_pred eeeehhHHHHHHHHHHHhhcc
Confidence 334445555556666666653
No 285
>PRK11827 hypothetical protein; Provisional
Probab=27.77 E-value=19 Score=22.47 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=13.5
Q ss_pred HHHHhcCCCCccccccccC
Q 040159 130 DMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 130 ~~wl~~~~~CP~CR~~~~~ 148 (176)
+.||..--.||.|+.++.-
T Consensus 2 d~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWY 20 (60)
T ss_pred ChHHHhheECCCCCCcCeE
Confidence 3456556679999988854
No 286
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=27.73 E-value=1.1e+02 Score=19.51 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040159 18 LIGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i~~ 39 (176)
+++.+++++++++++.+..+-.
T Consensus 16 ~LIAvvLLLsIl~~lt~~ai~~ 37 (66)
T PF13179_consen 16 MLIAVVLLLSILAFLTYWAIKV 37 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554443
No 287
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.61 E-value=29 Score=23.62 Aligned_cols=13 Identities=23% Similarity=0.647 Sum_probs=11.1
Q ss_pred ccCHHHHHHHHhc
Q 040159 123 LFHVPCIDMWLSS 135 (176)
Q Consensus 123 ~fH~~Ci~~wl~~ 135 (176)
-||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999864
No 288
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.58 E-value=74 Score=25.79 Aligned_cols=12 Identities=0% Similarity=-0.053 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 040159 27 GFMMVATYHCIS 38 (176)
Q Consensus 27 ~~~vl~~~~~i~ 38 (176)
+++++++++.++
T Consensus 10 aa~llV~~i~l~ 21 (299)
T KOG3054|consen 10 AAALLVAVILLF 21 (299)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 289
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.36 E-value=49 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=13.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHH
Q 040159 9 QPGLQFSPLLIGLLGVIAGFMMV 31 (176)
Q Consensus 9 ~~~~~~~~~~i~~i~il~~~~vl 31 (176)
.+.+...+.+++++++.+++.++
T Consensus 53 a~GlKV~PvvVLvmSvgFIasV~ 75 (88)
T KOG3457|consen 53 APGLKVDPVVVLVMSVGFIASVF 75 (88)
T ss_pred CCCceeCCeeehhhhHHHHHHHH
Confidence 34555667777776666544443
No 290
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.32 E-value=30 Score=25.93 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=26.7
Q ss_pred ccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 102 AVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 102 ~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.||+.--...+..-.-|.=.+.||..|-..-.. .||.|..++
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~I 49 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPI 49 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCC
Confidence 366666555444444443456788888766443 399998877
No 291
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=66 Score=29.05 Aligned_cols=9 Identities=11% Similarity=-0.234 Sum_probs=4.6
Q ss_pred HhhhcCCCC
Q 040159 39 LGCCCCNNN 47 (176)
Q Consensus 39 ~~~c~~r~~ 47 (176)
++|+..+..
T Consensus 33 ~~y~~a~~~ 41 (548)
T COG2268 33 RFYIIARPN 41 (548)
T ss_pred eeEEecCCC
Confidence 555555443
No 292
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=25.92 E-value=51 Score=20.59 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=15.8
Q ss_pred CCCeeeEcCCCCCccCHHHHHHH
Q 040159 110 EGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 110 ~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
.++.+..|. |||.=|..=--+|
T Consensus 8 e~hWVA~L~-CGH~QHvRH~PPw 29 (61)
T PF12088_consen 8 EGHWVAELS-CGHTQHVRHDPPW 29 (61)
T ss_pred cCCEEEEec-ccccccccCCCCC
Confidence 467999998 9988775543333
No 293
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.72 E-value=63 Score=27.56 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=11.7
Q ss_pred CCCCCccccccccccc
Q 040159 94 KDCNEDTCAVCLGDFK 109 (176)
Q Consensus 94 ~~~~~~~C~ICl~~~~ 109 (176)
+...++.|++|-+..+
T Consensus 11 dedl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVS 26 (475)
T ss_pred ccccccccccccCccc
Confidence 3345678999988865
No 294
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=25.71 E-value=31 Score=31.07 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=47.2
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccCCCCC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPPP 152 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 152 (176)
....|.+|+...........+..|.|-+...|+..|-.....|+.|+..+......
T Consensus 259 ~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e 314 (553)
T KOG4430|consen 259 NKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKE 314 (553)
T ss_pred cccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccccccc
Confidence 34589999999988888888887889999999999999999999999888554443
No 295
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=25.30 E-value=77 Score=27.52 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 040159 19 IGLLGVIAGFMMVA 32 (176)
Q Consensus 19 i~~i~il~~~~vl~ 32 (176)
++++++|+-+++++
T Consensus 387 ~i~~avl~p~~il~ 400 (436)
T PTZ00208 387 MIILAVLVPAIILA 400 (436)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555444444
No 296
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=25.08 E-value=99 Score=26.58 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=15.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 040159 14 FSPLLIGLLGVIAGFMMVATYHCISLGCCCC 44 (176)
Q Consensus 14 ~~~~~i~~i~il~~~~vl~~~~~i~~~~c~~ 44 (176)
+...+.+.++++..+.+++++..+.+.+..+
T Consensus 301 ~~~~i~~~la~i~~i~l~~~vvR~vR~~~~h 331 (374)
T PF01528_consen 301 LHTGIAINLAVIAIICLIMMVVRLVRAFLYH 331 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555444433
No 297
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=25.03 E-value=32 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=14.9
Q ss_pred HHHHHHHHh-cCCCCccccccc
Q 040159 126 VPCIDMWLS-SHSNCPLCRANA 146 (176)
Q Consensus 126 ~~Ci~~wl~-~~~~CP~CR~~~ 146 (176)
+.||++-=. .++.||+||...
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 778876432 456799999854
No 298
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=24.92 E-value=31 Score=21.57 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=8.8
Q ss_pred CCccccccccC
Q 040159 138 NCPLCRANANA 148 (176)
Q Consensus 138 ~CP~CR~~~~~ 148 (176)
.||+||.++.-
T Consensus 10 aCP~~kg~L~~ 20 (60)
T COG2835 10 ACPVCKGPLVY 20 (60)
T ss_pred eccCcCCcceE
Confidence 49999998743
No 299
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.61 E-value=2.3e+02 Score=19.85 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 16 PLLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 16 ~~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
+-.+++.++.+++...++...+..+
T Consensus 72 pQalvLtaIVI~~a~~A~~Lal~i~ 96 (114)
T PRK08389 72 PQALVLTAIVIGVSTTALALSVAIK 96 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455544444444444
No 300
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.15 E-value=79 Score=20.59 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=19.7
Q ss_pred CCccCHHHHHHHHhcCCCCccccccccC
Q 040159 121 LHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 121 ~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.|-|+.+|...-| +..||.|-..+..
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 5789999987643 5679999877744
No 301
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=24.13 E-value=40 Score=22.79 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=27.7
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|.-|...+.--|.+. +-.|+..+..|..|++++.
T Consensus 33 rS~C~~C~~~L~~~~lIP-------------i~S~l~lrGrCr~C~~~I~ 69 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIP-------------ILSYLLLRGRCRYCGAPIP 69 (92)
T ss_pred CCcCcCCCCcCcccccch-------------HHHHHHhCCCCcccCCCCC
Confidence 356888888776554444 4569999999999999883
No 302
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=24.01 E-value=35 Score=23.25 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=15.7
Q ss_pred CCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 119 ECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 119 ~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
+||..|-.+=| +..+.||.|++.+
T Consensus 63 kCGfef~~~~i----k~pSRCP~CKSE~ 86 (97)
T COG3357 63 KCGFEFRDDKI----KKPSRCPKCKSEW 86 (97)
T ss_pred ccCcccccccc----CCcccCCcchhhc
Confidence 46777665322 3356799998876
No 303
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=23.80 E-value=43 Score=20.40 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=16.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHH
Q 040159 8 HQPGLQFSPLLIGLLGVIAGFMMVATY 34 (176)
Q Consensus 8 ~~~~~~~~~~~i~~i~il~~~~vl~~~ 34 (176)
..+....+|-.+++++++++++++++-
T Consensus 23 d~~~iKi~P~~Vi~~~~~~~~~v~~L~ 49 (54)
T PRK01253 23 ETEAIKIDPKTVIAIGLALGIFVLVLN 49 (54)
T ss_pred ccCccccCCeeeeeeHHHHHHHHHHHH
Confidence 444566677777776666666655543
No 304
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=23.61 E-value=18 Score=29.69 Aligned_cols=47 Identities=19% Similarity=0.476 Sum_probs=32.8
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
..|+||-.+= +.|.+....+|.--||..|+.+=+.. ..+|.+|-..+
T Consensus 282 k~csicgtse-nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 282 KYCSICGTSE-NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ceeccccCcC-CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 4699998774 34566666679999999999876533 34688875443
No 305
>PRK10220 hypothetical protein; Provisional
Probab=23.47 E-value=58 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.707 Sum_probs=12.2
Q ss_pred ccccccccccCCC-eeeEcCCCCCc
Q 040159 100 TCAVCLGDFKEGE-QVRVLPECLHL 123 (176)
Q Consensus 100 ~C~ICl~~~~~~~-~~~~l~~C~H~ 123 (176)
.|+-|-.+|.-.+ ...+.|.|+|-
T Consensus 5 ~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 5 HCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred cCCCCCCcceEcCCCeEECCcccCc
Confidence 4777777665332 23333445554
No 306
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.30 E-value=4.9 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=18.4
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
..|+.|..+++... +|.++..|-.. +.....||-|..++..
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHHH
Confidence 35888877755332 44444555332 3344568888877743
No 307
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.17 E-value=1.2e+02 Score=19.11 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040159 18 LIGLLGVIAGFMMVATYHCI 37 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i 37 (176)
.-|++.+++++++.++++++
T Consensus 50 ~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 50 TKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555444
No 308
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.02 E-value=1.1e+02 Score=26.01 Aligned_cols=8 Identities=0% Similarity=-0.342 Sum_probs=3.9
Q ss_pred hhhcCCCC
Q 040159 40 GCCCCNNN 47 (176)
Q Consensus 40 ~~c~~r~~ 47 (176)
...|.|+.
T Consensus 331 LILRYRRK 338 (353)
T TIGR01477 331 LILRYRRK 338 (353)
T ss_pred HHHHhhhc
Confidence 44555543
No 309
>PRK01343 zinc-binding protein; Provisional
Probab=23.00 E-value=43 Score=20.69 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=9.1
Q ss_pred CCCCcccccccc
Q 040159 136 HSNCPLCRANAN 147 (176)
Q Consensus 136 ~~~CP~CR~~~~ 147 (176)
...||+|+++..
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 356999998763
No 310
>PTZ00046 rifin; Provisional
Probab=22.90 E-value=1.1e+02 Score=26.09 Aligned_cols=8 Identities=0% Similarity=-0.342 Sum_probs=3.7
Q ss_pred hhhcCCCC
Q 040159 40 GCCCCNNN 47 (176)
Q Consensus 40 ~~c~~r~~ 47 (176)
...|.|+.
T Consensus 336 LILRYRRK 343 (358)
T PTZ00046 336 LILRYRRK 343 (358)
T ss_pred HHHHhhhc
Confidence 44554443
No 311
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=22.62 E-value=28 Score=35.00 Aligned_cols=49 Identities=31% Similarity=0.558 Sum_probs=38.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
....|-+|+...++.+.+.... |.-.||.-|+..-+.. ...||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3457999999988765555555 8889999999998865 34699998866
No 312
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=22.60 E-value=98 Score=30.27 Aligned_cols=27 Identities=30% Similarity=0.584 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040159 15 SPLLIGLLGVIAGFMMVATYHCISLGC 41 (176)
Q Consensus 15 ~~~~i~~i~il~~~~vl~~~~~i~~~~ 41 (176)
.+++++++++++++++++++.+++.++
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888887776666553
No 313
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.40 E-value=1e+02 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHH
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
.....|+.|-. +. ...-..|.||+.+|.+=-..+
T Consensus 307 ~tS~~C~~cg~-~~--~r~~~C~~cg~~~~rD~naa~ 340 (364)
T COG0675 307 YTSKTCPCCGH-LS--GRLFKCPRCGFVHDRDVNAAL 340 (364)
T ss_pred CCcccccccCC-cc--ceeEECCCCCCeehhhHHHHH
Confidence 44568999998 22 344455569999999876555
No 314
>PRK14710 hypothetical protein; Provisional
Probab=22.29 E-value=88 Score=20.23 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=7.4
Q ss_pred CCCchHHHHHHHHHHH
Q 040159 12 LQFSPLLIGLLGVIAG 27 (176)
Q Consensus 12 ~~~~~~~i~~i~il~~ 27 (176)
.|.+..++.+.++++.
T Consensus 6 sn~skm~ififaiii~ 21 (86)
T PRK14710 6 SNLSKMIIFIFAIIII 21 (86)
T ss_pred cchhHHHHHHHHHHHH
Confidence 3455555544444433
No 315
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=22.22 E-value=1.2e+02 Score=16.29 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 040159 15 SPLLIGLLGVIAGFMMVATYHCI 37 (176)
Q Consensus 15 ~~~~i~~i~il~~~~vl~~~~~i 37 (176)
+.+++-+++++.-++.++++++.
T Consensus 4 PsI~VPlVglvfPai~Ma~lf~y 26 (31)
T TIGR03052 4 PSIFVPLVGLVFPAVFMALLFRY 26 (31)
T ss_pred ceeehhHHHHHHHHHHHHHHHHh
Confidence 34455566666666655555543
No 316
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=21.87 E-value=1.1e+02 Score=22.91 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC
Q 040159 21 LLGVIAGFMMVATYHCISLGCCCCNN 46 (176)
Q Consensus 21 ~i~il~~~~vl~~~~~i~~~~c~~r~ 46 (176)
+..++++++.+++||+++.++.++..
T Consensus 10 ~~~i~iGl~~f~iYyfvF~flI~kfn 35 (161)
T PRK09702 10 LTQIAIGLCFTLLYFVVFRTLILQFN 35 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC
No 317
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=21.70 E-value=1.6e+02 Score=16.38 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q 040159 13 QFSPLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 13 ~~~~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
.++.+++-+++++.-++.++++|+..
T Consensus 5 ~LPsI~VPlVGlvfPai~Ma~lf~yI 30 (36)
T CHL00186 5 NLPSILVPLVGLVFPAIAMASLFLYI 30 (36)
T ss_pred cCchhHHhHHHHHHHHHHHHHHHHHh
Confidence 45566666777776666666665544
No 318
>PRK06287 cobalt transport protein CbiN; Validated
Probab=21.70 E-value=2e+02 Score=19.99 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040159 18 LIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i~ 38 (176)
-+++.+++.+++++++.+.+.
T Consensus 78 g~ilsgiiGv~i~l~l~~~~~ 98 (107)
T PRK06287 78 GEIIAMVIGTLLVLALAYGVG 98 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544444444433
No 319
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.67 E-value=31 Score=30.25 Aligned_cols=17 Identities=12% Similarity=-0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040159 17 LLIGLLGVIAGFMMVAT 33 (176)
Q Consensus 17 ~~i~~i~il~~~~vl~~ 33 (176)
..+++++++++++++++
T Consensus 351 ~~~~l~vVlgvavlivV 367 (439)
T PF02480_consen 351 GAALLGVVLGVAVLIVV 367 (439)
T ss_dssp -----------------
T ss_pred ccchHHHHHHHHHHHHH
Confidence 34444444444444433
No 320
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=21.66 E-value=40 Score=17.13 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=7.0
Q ss_pred CCccccccc
Q 040159 138 NCPLCRANA 146 (176)
Q Consensus 138 ~CP~CR~~~ 146 (176)
.||+|...+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 599997765
No 321
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=21.62 E-value=2e+02 Score=18.02 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 040159 19 IGLLGVIAGFMMV 31 (176)
Q Consensus 19 i~~i~il~~~~vl 31 (176)
+++++++.++.+.
T Consensus 30 iiflailfgftia 42 (73)
T PF07069_consen 30 IIFLAILFGFTIA 42 (73)
T ss_pred HHHHHHHHhhHHH
Confidence 4444444444443
No 322
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=21.43 E-value=1.9e+02 Score=19.19 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 040159 18 LIGLLGVI 25 (176)
Q Consensus 18 ~i~~i~il 25 (176)
+...++|+
T Consensus 44 l~a~~iI~ 51 (84)
T PRK13718 44 LAAVFVIL 51 (84)
T ss_pred HHHHHHHH
Confidence 33333333
No 323
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.26 E-value=55 Score=17.03 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=16.4
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHH
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPC 128 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~C 128 (176)
.|.+|.++.....--.-. .|...+|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~-~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCS-ECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeC-CCCCeEcCcc
Confidence 478887776544222223 3777777776
No 324
>PF15353 HECA: Headcase protein family homologue
Probab=21.13 E-value=57 Score=22.83 Aligned_cols=14 Identities=21% Similarity=0.627 Sum_probs=12.2
Q ss_pred CCCccCHHHHHHHH
Q 040159 120 CLHLFHVPCIDMWL 133 (176)
Q Consensus 120 C~H~fH~~Ci~~wl 133 (176)
.++..|.+|.+.|-
T Consensus 40 ~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 40 FGQYMHRECFEKWE 53 (107)
T ss_pred CCCchHHHHHHHHH
Confidence 47899999999993
No 325
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.02 E-value=2.2e+02 Score=18.69 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040159 18 LIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 18 ~i~~i~il~~~~vl~~~~~i~ 38 (176)
.+.++++++.+++++++-++.
T Consensus 30 ~faFV~~L~~fL~~liVRCfr 50 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIVRCFR 50 (81)
T ss_pred eehHHHHHHHHHHHHHHHHHH
Confidence 344555554444444443333
No 326
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.97 E-value=59 Score=24.62 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=6.6
Q ss_pred CCCCcccccc
Q 040159 136 HSNCPLCRAN 145 (176)
Q Consensus 136 ~~~CP~CR~~ 145 (176)
...||+|.++
T Consensus 149 P~~CPiCga~ 158 (166)
T COG1592 149 PEVCPICGAP 158 (166)
T ss_pred CCcCCCCCCh
Confidence 3468888654
No 327
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.95 E-value=38 Score=20.91 Aligned_cols=13 Identities=23% Similarity=0.754 Sum_probs=6.5
Q ss_pred CCCccccccccCC
Q 040159 137 SNCPLCRANANAA 149 (176)
Q Consensus 137 ~~CP~CR~~~~~~ 149 (176)
..||+|++++...
T Consensus 3 v~CP~C~k~~~~~ 15 (57)
T PF03884_consen 3 VKCPICGKPVEWS 15 (57)
T ss_dssp EE-TTT--EEE-S
T ss_pred ccCCCCCCeeccc
Confidence 3599999888553
No 328
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.95 E-value=37 Score=31.61 Aligned_cols=34 Identities=24% Similarity=0.834 Sum_probs=23.8
Q ss_pred eeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 114 VRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 114 ~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
+...|.|.-+||.+=.+.-..++..||.||.+-.
T Consensus 1044 it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1044 ITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 3344456677777766666677888999998763
No 329
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=20.93 E-value=3.5e+02 Score=20.00 Aligned_cols=7 Identities=0% Similarity=-0.263 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 040159 32 ATYHCIS 38 (176)
Q Consensus 32 ~~~~~i~ 38 (176)
+++|.++
T Consensus 96 f~lY~l~ 102 (152)
T PF15361_consen 96 FILYTLF 102 (152)
T ss_pred HHHHHHH
Confidence 3333333
No 330
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.92 E-value=36 Score=25.31 Aligned_cols=22 Identities=32% Similarity=0.794 Sum_probs=14.4
Q ss_pred CCCccCHHHHHHHHhc-----------CCCCccccccc
Q 040159 120 CLHLFHVPCIDMWLSS-----------HSNCPLCRANA 146 (176)
Q Consensus 120 C~H~fH~~Ci~~wl~~-----------~~~CP~CR~~~ 146 (176)
++|.| +.||.. -.+||+|-..-
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 46775 678754 24699996543
No 331
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=20.88 E-value=2.4e+02 Score=25.18 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhcCCC
Q 040159 32 ATYHCISLGCCCCNN 46 (176)
Q Consensus 32 ~~~~~i~~~~c~~r~ 46 (176)
++++.++.++|+||.
T Consensus 60 ~ll~yli~~cC~Rr~ 74 (526)
T KOG4433|consen 60 FLLFYLICRCCCRRE 74 (526)
T ss_pred HHHHHHHHHHHcCCC
Confidence 334444445566655
No 332
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=20.83 E-value=19 Score=21.17 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=8.7
Q ss_pred CCCCccccc-cccC
Q 040159 136 HSNCPLCRA-NANA 148 (176)
Q Consensus 136 ~~~CP~CR~-~~~~ 148 (176)
...||.|.+ .+.+
T Consensus 26 ~~~CP~Cg~~~~~r 39 (52)
T TIGR02605 26 LATCPECGGEKLRR 39 (52)
T ss_pred CCCCCCCCCCceeE
Confidence 346999987 4544
No 333
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=20.75 E-value=1.8e+02 Score=17.16 Aligned_cols=17 Identities=6% Similarity=-0.027 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhhc
Q 040159 27 GFMMVATYHCISLGCCC 43 (176)
Q Consensus 27 ~~~vl~~~~~i~~~~c~ 43 (176)
+++.++++....-.+|-
T Consensus 13 v~~Cl~lyl~ald~~CD 29 (47)
T PRK10299 13 VLACLLLWAQVFNMMCD 29 (47)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33344455444545553
No 334
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.70 E-value=19 Score=26.77 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=17.0
Q ss_pred cCHHHHHHHHhc----CCCCccccccc
Q 040159 124 FHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 124 fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
||..|+++=|.. .-.||.|+..-
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 889998887754 33599997644
No 335
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=20.63 E-value=2e+02 Score=25.14 Aligned_cols=6 Identities=33% Similarity=0.966 Sum_probs=2.6
Q ss_pred hhhcCC
Q 040159 40 GCCCCN 45 (176)
Q Consensus 40 ~~c~~r 45 (176)
++|+|+
T Consensus 64 ~CCcr~ 69 (418)
T cd07912 64 RCCDRK 69 (418)
T ss_pred hccCCC
Confidence 444444
No 336
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=20.45 E-value=36 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=5.9
Q ss_pred CCccccccccCC
Q 040159 138 NCPLCRANANAA 149 (176)
Q Consensus 138 ~CP~CR~~~~~~ 149 (176)
.||.|-+.+.+.
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 489998888543
No 337
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.41 E-value=69 Score=30.48 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=23.3
Q ss_pred cccccccccccCCC---eeeE--cCCCCCccCHHHHHHH
Q 040159 99 DTCAVCLGDFKEGE---QVRV--LPECLHLFHVPCIDMW 132 (176)
Q Consensus 99 ~~C~ICl~~~~~~~---~~~~--l~~C~H~fH~~Ci~~w 132 (176)
+.|..|-..|..-. ..|. ..+||.+||..|-...
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnR 499 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKR 499 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCc
Confidence 57999999995321 1121 3359999999997654
No 338
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=20.32 E-value=62 Score=28.08 Aligned_cols=31 Identities=16% Similarity=0.457 Sum_probs=20.0
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHH
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDM 131 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~ 131 (176)
.+|+||+-.|-..... +. .|.--.|..|+.+
T Consensus 75 ~ecpicflyyps~~n~-~r-cC~~~Ic~ecf~~ 105 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNL-VR-CCSETICGECFAP 105 (482)
T ss_pred ccCceeeeecccccch-hh-hhccchhhhheec
Confidence 4899999988653211 12 2667777777654
No 339
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.26 E-value=93 Score=22.69 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=10.0
Q ss_pred CCCccccccccCC
Q 040159 137 SNCPLCRANANAA 149 (176)
Q Consensus 137 ~~CP~CR~~~~~~ 149 (176)
..||.|...+...
T Consensus 124 f~Cp~Cg~~l~~~ 136 (147)
T smart00531 124 FTCPRCGEELEED 136 (147)
T ss_pred EECCCCCCEEEEc
Confidence 5699999888443
No 340
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=20.07 E-value=46 Score=20.95 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=8.9
Q ss_pred CCCcccccccc
Q 040159 137 SNCPLCRANAN 147 (176)
Q Consensus 137 ~~CP~CR~~~~ 147 (176)
..||+|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 46999999874
No 341
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.02 E-value=72 Score=25.54 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=16.6
Q ss_pred ccccccccccCCCeeeEcCCCCCcc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLF 124 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~f 124 (176)
.|++|...+...+.--..+ .+|.|
T Consensus 4 ~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 4 QCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred cCCCCCcchhcCCCEEEcC-CCCCC
Confidence 6999999997555433333 47887
Done!