Query 040159
Match_columns 176
No_of_seqs 149 out of 1612
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 2.1E-18 7.3E-23 117.1 7.7 74 73-147 12-88 (91)
2 1x4j_A Ring finger protein 38; 99.7 6.1E-18 2.1E-22 110.7 3.6 64 84-148 7-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 9.2E-17 3.1E-21 98.7 3.6 50 97-146 4-53 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 2.7E-16 9.3E-21 101.0 5.7 54 97-151 13-66 (69)
5 2ep4_A Ring finger protein 24; 99.6 3.8E-16 1.3E-20 101.7 5.0 52 97-149 14-65 (74)
6 2ecl_A Ring-box protein 2; RNF 99.6 3.3E-16 1.1E-20 104.1 4.1 51 97-147 14-75 (81)
7 2ect_A Ring finger protein 126 99.6 9.3E-16 3.2E-20 100.8 5.4 51 97-148 14-64 (78)
8 3dpl_R Ring-box protein 1; ubi 99.5 1.4E-15 4.7E-20 106.1 2.9 50 96-146 35-99 (106)
9 1v87_A Deltex protein 2; ring- 99.5 5.9E-15 2E-19 103.7 5.5 54 97-151 24-97 (114)
10 2ecm_A Ring finger and CHY zin 99.5 3.7E-15 1.3E-19 91.3 3.9 49 97-146 4-53 (55)
11 3ng2_A RNF4, snurf, ring finge 99.5 8E-15 2.7E-19 94.4 3.1 51 96-147 8-62 (71)
12 2ea6_A Ring finger protein 4; 99.5 1.2E-14 4.1E-19 92.9 3.8 51 97-148 14-68 (69)
13 2xeu_A Ring finger protein 4; 99.5 1E-14 3.5E-19 91.8 3.0 51 97-148 2-56 (64)
14 4a0k_B E3 ubiquitin-protein li 99.5 3.3E-15 1.1E-19 105.7 -1.0 50 96-146 46-110 (117)
15 2d8s_A Cellular modulator of i 99.4 5.1E-14 1.8E-18 93.3 4.4 51 96-148 13-70 (80)
16 1chc_A Equine herpes virus-1 r 99.4 7.5E-14 2.6E-18 89.1 4.7 49 97-148 4-52 (68)
17 2ecn_A Ring finger protein 141 99.4 5.1E-14 1.8E-18 90.5 2.3 47 97-148 14-60 (70)
18 2ct2_A Tripartite motif protei 99.4 3.8E-13 1.3E-17 89.8 6.2 51 97-148 14-68 (88)
19 2djb_A Polycomb group ring fin 99.4 3.3E-13 1.1E-17 87.2 5.3 49 97-148 14-62 (72)
20 2d8t_A Dactylidin, ring finger 99.4 7.1E-14 2.4E-18 90.2 1.9 47 97-147 14-60 (71)
21 2ct0_A Non-SMC element 1 homol 99.4 4.6E-13 1.6E-17 87.2 4.2 49 97-148 14-64 (74)
22 2ecy_A TNF receptor-associated 99.3 6.7E-13 2.3E-17 84.3 4.5 47 97-147 14-61 (66)
23 4ayc_A E3 ubiquitin-protein li 99.3 2.2E-13 7.5E-18 99.0 2.1 49 98-150 53-101 (138)
24 2csy_A Zinc finger protein 183 99.3 6.1E-13 2.1E-17 87.9 4.0 47 97-147 14-60 (81)
25 2ysl_A Tripartite motif-contai 99.3 8.1E-13 2.8E-17 85.3 4.2 48 96-147 18-68 (73)
26 2yur_A Retinoblastoma-binding 99.3 1.1E-12 3.7E-17 85.3 4.5 47 97-146 14-62 (74)
27 4ap4_A E3 ubiquitin ligase RNF 99.3 1E-12 3.4E-17 93.9 3.5 51 97-148 6-60 (133)
28 2ecv_A Tripartite motif-contai 99.3 4E-12 1.4E-16 84.0 5.3 48 97-148 18-71 (85)
29 2ysj_A Tripartite motif-contai 99.3 4.5E-12 1.5E-16 79.6 5.1 43 96-142 18-63 (63)
30 2ecw_A Tripartite motif-contai 99.3 3.4E-12 1.2E-16 84.4 4.8 48 97-148 18-71 (85)
31 3lrq_A E3 ubiquitin-protein li 99.3 1.5E-12 5.2E-17 89.5 3.1 48 97-147 21-69 (100)
32 1g25_A CDK-activating kinase a 99.3 4E-12 1.4E-16 80.4 4.1 50 97-147 2-54 (65)
33 2egp_A Tripartite motif-contai 99.2 1.4E-12 4.8E-17 85.4 1.8 49 96-148 10-65 (79)
34 1t1h_A Gspef-atpub14, armadill 99.2 3.2E-12 1.1E-16 83.6 3.5 47 97-147 7-54 (78)
35 2y43_A E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 87.4 3.4 48 98-148 22-69 (99)
36 2ckl_A Polycomb group ring fin 99.2 5.5E-12 1.9E-16 87.7 4.2 49 97-148 14-62 (108)
37 4ap4_A E3 ubiquitin ligase RNF 99.2 3.7E-12 1.3E-16 90.9 3.1 52 96-148 70-125 (133)
38 2ecj_A Tripartite motif-contai 99.2 6.7E-12 2.3E-16 77.3 3.4 42 97-142 14-58 (58)
39 3fl2_A E3 ubiquitin-protein li 99.2 7.8E-12 2.7E-16 89.0 3.6 48 97-148 51-99 (124)
40 3ztg_A E3 ubiquitin-protein li 99.2 1.8E-11 6.3E-16 82.4 4.4 47 97-146 12-60 (92)
41 2ckl_B Ubiquitin ligase protei 99.2 1.7E-11 5.7E-16 91.4 4.2 47 98-147 54-101 (165)
42 1jm7_A BRCA1, breast cancer ty 99.2 1.6E-11 5.6E-16 85.4 3.8 47 98-148 21-70 (112)
43 3hct_A TNF receptor-associated 99.1 2.5E-11 8.5E-16 85.7 2.8 49 96-148 16-65 (118)
44 1z6u_A NP95-like ring finger p 99.1 3.9E-11 1.3E-15 88.4 3.6 48 98-149 78-126 (150)
45 1rmd_A RAG1; V(D)J recombinati 99.1 4.7E-11 1.6E-15 83.9 3.1 47 98-148 23-70 (116)
46 1e4u_A Transcriptional repress 99.1 1.9E-10 6.6E-15 75.6 5.9 54 96-150 9-64 (78)
47 3l11_A E3 ubiquitin-protein li 99.1 2E-11 6.9E-16 85.7 1.0 46 98-147 15-61 (115)
48 2vje_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 75.8 1.9 48 97-147 7-56 (64)
49 2y1n_A E3 ubiquitin-protein li 99.0 1.4E-10 4.7E-15 97.0 3.8 48 97-148 331-379 (389)
50 1bor_A Transcription factor PM 99.0 8.9E-11 3.1E-15 72.2 2.0 44 97-147 5-48 (56)
51 2kr4_A Ubiquitin conjugation f 99.0 2.2E-10 7.4E-15 76.5 3.4 47 97-147 13-59 (85)
52 2vje_B MDM4 protein; proto-onc 99.0 1.3E-10 4.4E-15 73.3 1.9 49 97-147 6-55 (63)
53 3k1l_B Fancl; UBC, ring, RWD, 99.0 1E-10 3.6E-15 95.9 1.6 52 97-148 307-373 (381)
54 3knv_A TNF receptor-associated 99.0 1.1E-10 3.9E-15 85.0 1.4 47 96-146 29-76 (141)
55 2kre_A Ubiquitin conjugation f 98.9 2.8E-10 9.6E-15 78.2 2.8 47 97-147 28-74 (100)
56 1wgm_A Ubiquitin conjugation f 98.9 5.1E-10 1.7E-14 76.7 3.3 48 97-148 21-69 (98)
57 1jm7_B BARD1, BRCA1-associated 98.9 1.8E-10 6.3E-15 81.1 1.0 45 97-147 21-66 (117)
58 4ic3_A E3 ubiquitin-protein li 98.9 2.4E-10 8.1E-15 74.2 1.3 44 97-148 23-67 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.9 2.3E-09 7.7E-14 66.9 4.2 47 97-147 5-58 (60)
60 3hcs_A TNF receptor-associated 98.8 1.3E-09 4.3E-14 81.4 3.0 49 96-148 16-65 (170)
61 2ea5_A Cell growth regulator w 98.8 6.3E-09 2.1E-13 66.4 4.1 45 96-148 13-58 (68)
62 2ecg_A Baculoviral IAP repeat- 98.7 3.8E-09 1.3E-13 68.5 2.7 43 98-148 25-68 (75)
63 1wim_A KIAA0161 protein; ring 98.7 4.7E-09 1.6E-13 71.0 2.9 48 97-145 4-61 (94)
64 2c2l_A CHIP, carboxy terminus 98.7 4.8E-09 1.6E-13 83.4 3.1 47 97-147 207-254 (281)
65 2yu4_A E3 SUMO-protein ligase 98.7 4.5E-09 1.5E-13 71.2 2.3 46 97-145 6-59 (94)
66 2yho_A E3 ubiquitin-protein li 98.6 8.2E-09 2.8E-13 67.8 1.1 44 98-149 18-62 (79)
67 2f42_A STIP1 homology and U-bo 98.6 2.1E-08 7.1E-13 75.7 2.9 47 97-147 105-152 (179)
68 3t6p_A Baculoviral IAP repeat- 98.4 2.8E-08 9.7E-13 82.2 0.7 44 97-148 294-338 (345)
69 3htk_C E3 SUMO-protein ligase 98.4 1.4E-07 4.8E-12 74.9 2.7 46 98-146 181-230 (267)
70 2bay_A PRE-mRNA splicing facto 98.3 1.4E-07 5E-12 58.8 1.6 44 99-146 4-48 (61)
71 3vk6_A E3 ubiquitin-protein li 98.3 4.8E-07 1.6E-11 61.3 3.3 48 100-150 3-51 (101)
72 3nw0_A Non-structural maintena 98.2 1.3E-06 4.5E-11 68.7 4.6 49 98-149 180-230 (238)
73 2lri_C Autoimmune regulator; Z 95.9 0.0041 1.4E-07 39.0 2.4 46 97-146 11-60 (66)
74 1wil_A KIAA1045 protein; ring 95.4 0.026 9E-07 36.8 4.7 34 97-132 14-47 (89)
75 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.019 6.3E-07 38.4 3.0 35 97-132 2-36 (101)
76 2ko5_A Ring finger protein Z; 94.3 0.058 2E-06 35.9 4.2 50 96-151 26-76 (99)
77 2l5u_A Chromodomain-helicase-D 91.6 0.09 3.1E-06 32.0 2.0 45 96-144 9-57 (61)
78 3u5n_A E3 ubiquitin-protein li 91.5 0.037 1.3E-06 42.0 0.2 47 96-146 5-55 (207)
79 2k16_A Transcription initiatio 91.3 0.052 1.8E-06 34.4 0.7 51 97-148 17-71 (75)
80 1mm2_A MI2-beta; PHD, zinc fin 90.3 0.05 1.7E-06 33.2 -0.1 47 96-146 7-57 (61)
81 2klu_A T-cell surface glycopro 90.1 0.75 2.5E-05 28.4 5.0 18 20-37 12-29 (70)
82 3o36_A Transcription intermedi 89.7 0.058 2E-06 40.1 -0.2 46 97-146 3-52 (184)
83 2lbm_A Transcriptional regulat 89.6 0.38 1.3E-05 34.5 4.1 46 95-144 60-116 (142)
84 1we9_A PHD finger family prote 89.5 0.081 2.8E-06 32.4 0.4 50 97-146 5-59 (64)
85 1f62_A Transcription factor WS 89.5 0.14 4.8E-06 29.8 1.4 44 100-144 2-49 (51)
86 1fp0_A KAP-1 corepressor; PHD 88.8 0.17 5.7E-06 33.3 1.5 46 96-145 23-72 (88)
87 1wev_A Riken cDNA 1110020M19; 88.6 0.078 2.7E-06 34.8 -0.2 53 98-150 16-77 (88)
88 2yql_A PHD finger protein 21A; 88.1 0.05 1.7E-06 32.5 -1.3 45 96-144 7-55 (56)
89 2e6r_A Jumonji/ARID domain-con 88.0 0.12 4.2E-06 34.2 0.5 50 96-146 14-67 (92)
90 3ql9_A Transcriptional regulat 87.8 0.66 2.3E-05 32.6 4.2 46 95-144 54-110 (129)
91 2ysm_A Myeloid/lymphoid or mix 87.4 0.14 4.7E-06 34.9 0.5 47 96-143 5-55 (111)
92 2puy_A PHD finger protein 21A; 87.1 0.053 1.8E-06 32.9 -1.6 46 97-146 4-53 (60)
93 1xwh_A Autoimmune regulator; P 86.8 0.07 2.4E-06 33.0 -1.2 45 97-145 7-55 (66)
94 2yt5_A Metal-response element- 86.7 0.097 3.3E-06 32.2 -0.6 51 96-146 4-62 (66)
95 3lqh_A Histone-lysine N-methyl 86.1 0.22 7.4E-06 37.3 1.0 48 99-146 3-64 (183)
96 3v43_A Histone acetyltransfera 85.0 0.2 6.8E-06 34.2 0.3 46 99-144 62-111 (112)
97 2ku3_A Bromodomain-containing 84.7 0.3 1E-05 30.7 1.0 50 96-145 14-66 (71)
98 3v43_A Histone acetyltransfera 84.2 1.5 5.2E-05 29.7 4.5 46 98-143 5-62 (112)
99 2l43_A N-teminal domain from h 83.6 0.32 1.1E-05 31.8 0.8 50 97-146 24-76 (88)
100 2yw8_A RUN and FYVE domain-con 81.7 1 3.5E-05 28.9 2.7 35 97-131 18-52 (82)
101 2ro1_A Transcription intermedi 81.6 0.27 9.1E-06 36.8 -0.2 45 98-146 2-50 (189)
102 2xb1_A Pygopus homolog 2, B-ce 79.2 0.37 1.3E-05 32.6 -0.1 49 98-146 3-62 (105)
103 4gne_A Histone-lysine N-methyl 79.0 1.9 6.6E-05 29.2 3.5 50 96-151 13-68 (107)
104 2klu_A T-cell surface glycopro 78.9 4.6 0.00016 24.9 4.8 23 20-42 9-31 (70)
105 2jwa_A Receptor tyrosine-prote 78.5 6.2 0.00021 22.3 4.9 32 15-47 9-40 (44)
106 1zza_A Stannin, AG8_1; helix, 78.1 10 0.00035 23.8 7.1 43 9-51 3-45 (90)
107 2ri7_A Nucleosome-remodeling f 77.9 0.58 2E-05 34.2 0.6 48 97-145 7-59 (174)
108 2l8s_A Integrin alpha-1; trans 77.5 5.8 0.0002 23.4 4.8 25 16-40 8-32 (54)
109 2vpb_A Hpygo1, pygopus homolog 77.4 1.8 6.3E-05 26.5 2.8 33 97-129 7-40 (65)
110 2kgg_A Histone demethylase jar 76.4 2.1 7.3E-05 24.8 2.7 44 100-143 4-52 (52)
111 2kwj_A Zinc finger protein DPF 75.8 2 6.7E-05 29.2 2.8 45 99-143 2-59 (114)
112 3shb_A E3 ubiquitin-protein li 75.5 0.3 1E-05 31.3 -1.4 44 100-144 28-76 (77)
113 1z60_A TFIIH basal transcripti 75.5 1.4 4.7E-05 26.7 1.7 43 99-142 16-58 (59)
114 1wep_A PHF8; structural genomi 75.3 1.7 5.9E-05 27.5 2.3 48 98-146 12-64 (79)
115 2knc_A Integrin alpha-IIB; tra 74.6 11 0.00037 22.2 7.5 26 15-40 10-35 (54)
116 1vfy_A Phosphatidylinositol-3- 72.0 2.8 9.6E-05 26.1 2.7 33 98-130 11-43 (73)
117 2lv9_A Histone-lysine N-methyl 71.9 0.68 2.3E-05 30.8 -0.3 43 100-144 30-75 (98)
118 1wem_A Death associated transc 71.7 1.7 5.8E-05 27.2 1.6 47 98-146 16-71 (76)
119 2e6s_A E3 ubiquitin-protein li 71.7 0.57 2E-05 29.9 -0.7 44 100-144 28-76 (77)
120 1weo_A Cellulose synthase, cat 71.1 9 0.00031 25.0 4.9 52 97-148 15-70 (93)
121 1z2q_A LM5-1; membrane protein 70.9 3.2 0.00011 26.6 2.8 36 97-132 20-55 (84)
122 2cs3_A Protein C14ORF4, MY039 68.9 5.7 0.00019 25.5 3.5 46 97-142 14-64 (93)
123 2k1a_A Integrin alpha-IIB; sin 68.0 13 0.00046 20.6 5.8 26 15-40 8-33 (42)
124 3asl_A E3 ubiquitin-protein li 67.9 0.76 2.6E-05 28.6 -0.7 44 100-144 20-68 (70)
125 1joc_A EEA1, early endosomal a 67.9 3.1 0.00011 28.8 2.4 35 97-131 68-102 (125)
126 1y02_A CARP2, FYVE-ring finger 67.6 0.74 2.5E-05 31.9 -0.9 50 97-146 18-67 (120)
127 3t7l_A Zinc finger FYVE domain 67.3 3.3 0.00011 26.9 2.3 36 97-132 19-54 (90)
128 2ks1_B Epidermal growth factor 67.2 14 0.00049 20.7 5.8 27 20-46 13-39 (44)
129 2kwj_A Zinc finger protein DPF 66.2 0.39 1.3E-05 32.9 -2.6 46 100-146 60-109 (114)
130 2l2t_A Receptor tyrosine-prote 65.8 16 0.00053 20.6 5.6 13 33-45 28-40 (44)
131 1wfk_A Zinc finger, FYVE domai 65.4 3.6 0.00012 26.7 2.2 52 97-148 8-66 (88)
132 1x4u_A Zinc finger, FYVE domai 65.1 4.3 0.00015 25.9 2.5 34 97-130 13-46 (84)
133 2gmg_A Hypothetical protein PF 65.0 1.4 4.7E-05 29.8 0.1 24 119-147 72-95 (105)
134 1dvp_A HRS, hepatocyte growth 65.0 3 0.0001 31.5 2.0 35 97-131 160-194 (220)
135 3zyq_A Hepatocyte growth facto 64.6 3.3 0.00011 31.6 2.2 36 97-132 163-198 (226)
136 3ask_A E3 ubiquitin-protein li 64.1 1.3 4.5E-05 34.1 -0.2 44 100-144 176-224 (226)
137 3m62_A Ubiquitin conjugation f 64.0 4.5 0.00015 37.5 3.3 47 98-148 891-938 (968)
138 1zbd_B Rabphilin-3A; G protein 63.3 3.6 0.00012 29.0 2.0 50 96-145 53-107 (134)
139 1wew_A DNA-binding family prot 62.4 2.2 7.5E-05 27.0 0.7 48 98-146 16-73 (78)
140 1wen_A Inhibitor of growth fam 62.1 3.9 0.00013 25.4 1.8 45 97-146 15-66 (71)
141 1weu_A Inhibitor of growth fam 62.1 3.8 0.00013 26.8 1.8 45 97-146 35-86 (91)
142 2ysm_A Myeloid/lymphoid or mix 61.3 1.5 5.1E-05 29.5 -0.3 45 100-145 56-104 (111)
143 1wyh_A SLIM 2, skeletal muscle 60.9 6.1 0.00021 23.7 2.6 40 98-147 5-44 (72)
144 3a1b_A DNA (cytosine-5)-methyl 58.0 8.3 0.00029 27.9 3.2 44 96-143 77-132 (159)
145 2jp3_A FXYD domain-containing 55.2 8.1 0.00028 23.8 2.3 36 10-45 8-44 (67)
146 1x4k_A Skeletal muscle LIM-pro 54.6 6.9 0.00023 23.5 2.0 39 99-147 6-44 (72)
147 1rh5_C Secbeta; protein transl 54.4 23 0.0008 20.6 4.2 29 6-34 20-48 (53)
148 1x63_A Skeletal muscle LIM-pro 53.4 9.7 0.00033 23.5 2.7 40 98-147 15-54 (82)
149 3o70_A PHD finger protein 13; 53.1 2.3 7.7E-05 26.3 -0.5 46 97-144 18-66 (68)
150 2dj7_A Actin-binding LIM prote 52.1 8.8 0.0003 23.9 2.3 40 97-147 14-53 (80)
151 3c6w_A P28ING5, inhibitor of g 52.0 4.1 0.00014 24.3 0.6 43 97-144 8-57 (59)
152 1x61_A Thyroid receptor intera 51.8 11 0.00036 22.7 2.6 38 99-146 6-43 (72)
153 2co8_A NEDD9 interacting prote 51.8 11 0.00036 23.6 2.6 41 97-148 14-54 (82)
154 2cu8_A Cysteine-rich protein 2 51.6 11 0.00037 23.0 2.6 39 98-147 9-47 (76)
155 1wee_A PHD finger family prote 51.5 1.4 4.7E-05 27.4 -1.7 47 99-146 17-67 (72)
156 1g47_A Pinch protein; LIM doma 51.3 9 0.00031 23.3 2.2 42 97-148 10-51 (77)
157 2zet_C Melanophilin; complex, 51.0 7.9 0.00027 27.8 2.1 46 97-144 67-116 (153)
158 1iml_A CRIP, cysteine rich int 50.9 6.5 0.00022 24.0 1.5 10 100-109 29-38 (76)
159 1x4l_A Skeletal muscle LIM-pro 50.8 8.9 0.0003 23.0 2.1 40 98-147 5-46 (72)
160 3i2d_A E3 SUMO-protein ligase 50.6 15 0.00051 30.3 3.9 44 100-146 251-298 (371)
161 2vnf_A ING 4, P29ING4, inhibit 50.3 4.1 0.00014 24.3 0.4 42 98-144 10-58 (60)
162 2pv0_B DNA (cytosine-5)-methyl 49.3 12 0.0004 31.1 3.1 45 96-144 91-147 (386)
163 3fyb_A Protein of unknown func 48.7 7.8 0.00027 25.8 1.6 11 124-134 42-52 (104)
164 2o35_A Hypothetical protein DU 48.7 7.8 0.00027 25.8 1.6 12 124-135 43-54 (105)
165 4fo9_A E3 SUMO-protein ligase 48.4 17 0.00059 29.8 4.0 44 100-146 217-264 (360)
166 2l3k_A Rhombotin-2, linker, LI 47.4 9.4 0.00032 25.8 2.0 35 98-134 36-70 (123)
167 2wwb_C SEC61BETA, protein tran 47.0 15 0.00051 24.3 2.7 26 7-32 61-86 (96)
168 2jo1_A Phospholemman; FXYD1, N 46.5 50 0.0017 20.4 4.9 17 30-46 28-44 (72)
169 2kv5_A FST, putative uncharact 46.5 31 0.0011 18.1 3.8 24 23-46 6-29 (33)
170 3f6q_B LIM and senescent cell 46.1 12 0.00041 22.2 2.1 41 98-148 11-51 (72)
171 2d8v_A Zinc finger FYVE domain 45.0 15 0.0005 22.6 2.3 31 97-132 7-38 (67)
172 3mpx_A FYVE, rhogef and PH dom 44.9 4.6 0.00016 33.3 0.0 37 97-133 374-410 (434)
173 1x68_A FHL5 protein; four-and- 44.8 12 0.00042 22.7 2.1 40 98-147 5-46 (76)
174 2k9j_B Integrin beta-3; transm 43.2 42 0.0014 18.6 4.4 22 19-40 11-32 (43)
175 1afo_A Glycophorin A; integral 41.9 42 0.0014 18.3 5.5 28 12-39 7-34 (40)
176 1jb0_I Photosystem 1 reaction 41.6 42 0.0014 18.2 3.6 27 12-38 8-34 (38)
177 1q90_G Cytochrome B6F complex 41.1 35 0.0012 18.3 3.1 21 23-43 8-28 (37)
178 2ww9_C Protein transport prote 39.6 21 0.00073 23.1 2.6 24 8-31 53-76 (87)
179 2zxe_G FXYD10, phospholemman-l 39.5 44 0.0015 20.8 3.9 42 7-48 7-49 (74)
180 2d8y_A Eplin protein; LIM doma 39.4 21 0.00072 22.5 2.6 39 98-147 15-53 (91)
181 3s8f_C Cytochrome C oxidase po 39.0 44 0.0015 17.6 3.8 16 19-34 12-27 (34)
182 1x62_A C-terminal LIM domain p 38.9 18 0.00061 22.1 2.2 38 98-147 15-52 (79)
183 1a7i_A QCRP2 (LIM1); LIM domai 37.9 9.4 0.00032 23.6 0.7 39 98-147 7-45 (81)
184 2jvx_A NF-kappa-B essential mo 37.8 6.8 0.00023 19.9 -0.0 11 136-146 3-13 (28)
185 2dar_A PDZ and LIM domain prot 37.1 14 0.00046 23.4 1.4 39 97-147 24-62 (90)
186 3mjh_B Early endosome antigen 36.7 9.4 0.00032 20.2 0.4 9 138-146 7-15 (34)
187 2lcq_A Putative toxin VAPC6; P 36.5 7.3 0.00025 27.9 -0.0 26 119-150 137-162 (165)
188 2pk7_A Uncharacterized protein 36.0 6.8 0.00023 24.3 -0.2 18 130-147 2-19 (69)
189 2d8z_A Four and A half LIM dom 35.5 25 0.00084 20.8 2.4 37 98-146 5-41 (70)
190 2ehe_A Four and A half LIM dom 35.1 24 0.00081 21.6 2.3 39 99-147 16-54 (82)
191 2g6q_A Inhibitor of growth pro 34.9 7.5 0.00026 23.4 -0.2 44 98-144 11-59 (62)
192 1nyp_A Pinch protein; LIM doma 33.8 20 0.00067 21.0 1.7 38 98-147 5-42 (66)
193 1x64_A Alpha-actinin-2 associa 33.7 29 0.00099 21.7 2.6 38 98-147 25-62 (89)
194 3o7a_A PHD finger protein 13 v 33.6 5.8 0.0002 22.8 -0.8 41 103-144 8-51 (52)
195 1zfo_A LAsp-1; LIM domain, zin 33.3 17 0.00057 18.4 1.1 27 99-128 4-30 (31)
196 2d8x_A Protein pinch; LIM doma 33.0 24 0.00084 20.8 2.0 39 98-148 5-43 (70)
197 1rut_X Flinc4, fusion protein 32.3 25 0.00085 25.5 2.3 28 100-129 71-98 (188)
198 2jny_A Uncharacterized BCR; st 31.3 6.8 0.00023 24.1 -0.8 18 131-148 5-22 (67)
199 1vf5_G Protein PET G; photosyn 31.2 30 0.001 18.5 1.9 23 23-45 8-30 (37)
200 2egq_A FHL1 protein; LIM domai 30.8 21 0.00072 21.5 1.5 39 99-147 16-57 (77)
201 1wig_A KIAA1808 protein; LIM d 30.4 29 0.00099 20.9 2.1 37 99-147 6-42 (73)
202 3kqi_A GRC5, PHD finger protei 30.0 15 0.0005 22.8 0.6 46 100-145 11-61 (75)
203 2cor_A Pinch protein; LIM doma 29.5 44 0.0015 20.4 2.9 38 98-147 15-52 (79)
204 2cup_A Skeletal muscle LIM-pro 28.4 41 0.0014 21.3 2.7 44 99-147 34-77 (101)
205 2l4z_A DNA endonuclease RBBP8, 28.1 24 0.00084 23.9 1.5 39 98-147 61-99 (123)
206 2cur_A Skeletal muscle LIM-pro 27.7 25 0.00085 20.7 1.4 38 98-147 5-42 (69)
207 2iyb_E Testin, TESS, TES; LIM 27.2 31 0.0011 20.1 1.8 38 99-146 3-42 (65)
208 1v6g_A Actin binding LIM prote 26.9 38 0.0013 20.6 2.2 37 99-147 16-52 (81)
209 2rsd_A E3 SUMO-protein ligase 26.8 4 0.00014 25.0 -2.5 44 100-144 12-64 (68)
210 2jmo_A Parkin; IBR, E3 ligase, 26.3 4.3 0.00015 25.7 -2.5 16 119-134 55-70 (80)
211 2cuq_A Four and A half LIM dom 26.0 34 0.0011 20.7 1.8 36 99-146 16-51 (80)
212 1wd2_A Ariadne-1 protein homol 25.5 22 0.00076 21.1 0.8 14 137-150 7-20 (60)
213 1j2o_A FLIN2, fusion of rhombo 24.0 51 0.0017 21.7 2.5 37 98-136 30-67 (114)
214 3kv5_D JMJC domain-containing 23.7 18 0.00061 30.9 0.2 46 99-145 38-88 (488)
215 2jr6_A UPF0434 protein NMA0874 23.1 6.9 0.00024 24.2 -1.9 16 133-148 5-20 (68)
216 2knc_B Integrin beta-3; transm 23.0 95 0.0033 19.4 3.5 21 19-39 16-36 (79)
217 2dlo_A Thyroid receptor-intera 21.6 32 0.0011 21.0 1.1 38 98-147 15-52 (81)
218 1x3h_A Leupaxin; paxillin fami 21.3 41 0.0014 20.3 1.5 37 99-147 16-52 (80)
219 2hf1_A Tetraacyldisaccharide-1 20.9 6.9 0.00023 24.2 -2.2 13 136-148 8-20 (68)
220 2ct7_A Ring finger protein 31; 20.5 8.3 0.00028 24.6 -2.0 21 115-135 44-64 (86)
221 1m3v_A FLIN4, fusion of the LI 20.2 82 0.0028 20.9 3.0 47 100-148 34-81 (122)
222 1b8t_A Protein (CRP1); LIM dom 20.0 48 0.0017 23.9 1.9 38 98-146 115-152 (192)
223 2js4_A UPF0434 protein BB2007; 20.0 7.3 0.00025 24.2 -2.3 12 136-147 8-19 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=117.15 Aligned_cols=74 Identities=27% Similarity=0.675 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHhCCceeeccCC---CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 73 RDRIRTSSVMRVLMPVFRFSSKD---CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
....++.+..++.+|...+.... ..+..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 45778999999999999998765 34568999999999999999999 9999999999999999999999999884
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-18 Score=110.67 Aligned_cols=64 Identities=39% Similarity=1.017 Sum_probs=55.1
Q ss_pred HhCCceeeccCC--CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 84 VLMPVFRFSSKD--CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
+.+|..+++... .++..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||+++.+
T Consensus 7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred hhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 456777776544 45668999999999999999999 99999999999999999999999998843
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.64 E-value=9.2e-17 Score=98.68 Aligned_cols=50 Identities=54% Similarity=1.213 Sum_probs=46.1
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
++.+|+||++.|..++.+..++.|+|.||..|+..|++.+.+||+||+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 46789999999999888888877999999999999999999999999987
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.7e-16 Score=101.00 Aligned_cols=54 Identities=48% Similarity=1.172 Sum_probs=48.4
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccCCCC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAPP 151 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 151 (176)
.+..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+....+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 4568999999999888899999 99999999999999999999999999955443
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.8e-16 Score=101.67 Aligned_cols=52 Identities=38% Similarity=0.879 Sum_probs=47.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccCC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAA 149 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~ 149 (176)
.+..|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4678999999999999999999 999999999999999999999999998543
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=104.07 Aligned_cols=51 Identities=35% Similarity=0.813 Sum_probs=42.4
Q ss_pred CCcccccccccccC-----------CCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKE-----------GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
+++.|+||++.|.+ ++.++.++.|+|.||.+||..|+..+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 56678888888854 4456666569999999999999999999999999873
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=9.3e-16 Score=100.76 Aligned_cols=51 Identities=47% Similarity=1.029 Sum_probs=47.0
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.+..|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4668999999999988889999 99999999999999999999999999844
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.55 E-value=1.4e-15 Score=106.12 Aligned_cols=50 Identities=32% Similarity=0.606 Sum_probs=43.7
Q ss_pred CCCcccccccccccCCC---------------eeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGE---------------QVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.+++.|+||++.|.... .++.++ |+|.||..||..||..+.+||+||+++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 56789999999998541 366777 999999999999999999999999986
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.54 E-value=5.9e-15 Score=103.67 Aligned_cols=54 Identities=22% Similarity=0.576 Sum_probs=43.7
Q ss_pred CCcccccccccccCCC---------------eeeEcCCCCCccCHHHHHHHH-----hcCCCCccccccccCCCC
Q 040159 97 NEDTCAVCLGDFKEGE---------------QVRVLPECLHLFHVPCIDMWL-----SSHSNCPLCRANANAAPP 151 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fH~~Ci~~wl-----~~~~~CP~CR~~~~~~~~ 151 (176)
.++.|+||++.|..+. .+..++ |+|.||..||..|+ ..+.+||+||+.+.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 4568999999997643 444777 99999999999999 446789999999865533
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.54 E-value=3.7e-15 Score=91.30 Aligned_cols=49 Identities=35% Similarity=0.807 Sum_probs=43.2
Q ss_pred CCcccccccccccCC-CeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEG-EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
.+..|+||++.|.++ +.+..++ |+|.||..|+..|+..+.+||+||.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 467899999999754 3577888 999999999999999999999999987
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=8e-15 Score=94.36 Aligned_cols=51 Identities=25% Similarity=0.653 Sum_probs=44.4
Q ss_pred CCCcccccccccccCC----CeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 96 CNEDTCAVCLGDFKEG----EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.++..|+||++.|.+. +.+..++ |||.||..|+..|+..+.+||+||.++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 3567899999999763 4567787 9999999999999999999999999984
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=92.85 Aligned_cols=51 Identities=25% Similarity=0.647 Sum_probs=44.0
Q ss_pred CCcccccccccccCC----CeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEG----EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++..|+||++.|.+. ..+..++ |||.||..||..|+..+.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 566899999999863 3457787 99999999999999999999999998843
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=91.82 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=44.0
Q ss_pred CCcccccccccccCC----CeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEG----EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++.+|+||++.|.++ +.+..++ |||.||..|+..|+..+.+||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 467899999999753 4557787 99999999999999999999999998843
No 14
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=3.3e-15 Score=105.74 Aligned_cols=50 Identities=34% Similarity=0.650 Sum_probs=1.9
Q ss_pred CCCcccccccccccCC-------------C--eeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEG-------------E--QVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~-------------~--~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..++.|+||++.|... + .+..++ |+|.||..||..||..+.+||+||+++
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 5678999999999752 2 223346 999999999999999999999999986
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.1e-14 Score=93.28 Aligned_cols=51 Identities=25% Similarity=0.754 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCCeeeEcCCCC-----CccCHHHHHHHHhcC--CCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECL-----HLFHVPCIDMWLSSH--SNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fH~~Ci~~wl~~~--~~CP~CR~~~~~ 148 (176)
.++..|.||+++|.+++.+ ++| |+ |.||.+||++|+..+ .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3567899999999877766 588 96 999999999999865 489999999843
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.44 E-value=7.5e-14 Score=89.11 Aligned_cols=49 Identities=35% Similarity=0.909 Sum_probs=42.9
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.+..|+||++.+.+ ....++ |||.||..|+..|+..+.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45689999999874 357888 99999999999999999999999999853
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.1e-14 Score=90.45 Aligned_cols=47 Identities=38% Similarity=1.035 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++..|+||++.+.+ ..++ |+|.||..|+..|+..+.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 46789999999875 6788 99999999999999999999999999853
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.8e-13 Score=89.82 Aligned_cols=51 Identities=25% Similarity=0.649 Sum_probs=43.8
Q ss_pred CCcccccccccccCCCe-eeEcCCCCCccCHHHHHHHHhcC---CCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQ-VRVLPECLHLFHVPCIDMWLSSH---SNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~-~~~l~~C~H~fH~~Ci~~wl~~~---~~CP~CR~~~~~ 148 (176)
+...|+||++.|.+.+. ...++ |||.||..|+..|+..+ ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45689999999997654 67788 99999999999999875 689999998744
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=87.22 Aligned_cols=49 Identities=24% Similarity=0.580 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++..|+||++.|.+. +.+++ |||.||..||..|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 456899999999854 33447 99999999999999999999999999844
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.1e-14 Score=90.20 Aligned_cols=47 Identities=30% Similarity=0.598 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
++..|+||++.+.+. ..++ |+|.||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 456899999998754 5678 9999999999999999999999999884
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.6e-13 Score=87.24 Aligned_cols=49 Identities=22% Similarity=0.637 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC--CCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH--SNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~CR~~~~~ 148 (176)
...+|+||.+.+..++... . |+|.||..||..||+.+ .+||+||+++..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4568999999999775444 4 99999999999999887 789999998843
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.7e-13 Score=84.29 Aligned_cols=47 Identities=23% Similarity=0.484 Sum_probs=40.1
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-cCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~ 147 (176)
++..|+||++.+.++ ..++ |||.||..||..|+. .+..||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 456899999999866 3367 999999999999994 5678999999884
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=2.2e-13 Score=98.96 Aligned_cols=49 Identities=33% Similarity=0.803 Sum_probs=42.7
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccCCC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANAAP 150 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~ 150 (176)
+..|+||++.|.++ ..++ |||.||..||..|+..+.+||+||.++...+
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 45799999999754 5678 9999999999999999999999999985543
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.1e-13 Score=87.86 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=41.5
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
....|+||++.|.+. .+++ |||.||..||..|+.....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 455899999999754 4677 9999999999999999999999999985
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.1e-13 Score=85.33 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh---cCCCCcccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS---SHSNCPLCRANAN 147 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~CR~~~~ 147 (176)
.++..|+||++.|.+. ..++ |||.||..|+..|+. .+..||+||..+.
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3567899999998854 5567 999999999999997 4567999999884
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=85.30 Aligned_cols=47 Identities=28% Similarity=0.612 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC--CCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH--SNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~CR~~~ 146 (176)
++..|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||..+
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 456899999999865 4566699999999999999865 6899999975
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=1e-12 Score=93.88 Aligned_cols=51 Identities=25% Similarity=0.647 Sum_probs=44.5
Q ss_pred CCcccccccccccCC----CeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEG----EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++..|+||++.|.++ +.+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 566899999999764 4557787 99999999999999999999999998854
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4e-12 Score=84.04 Aligned_cols=48 Identities=31% Similarity=0.662 Sum_probs=41.5
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc------CCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS------HSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~CR~~~~~ 148 (176)
++..|+||++.|.+. ..++ |||.||..|+..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 566899999999865 4567 9999999999999987 7789999999853
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.5e-12 Score=79.63 Aligned_cols=43 Identities=30% Similarity=0.674 Sum_probs=36.7
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh---cCCCCccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS---SHSNCPLC 142 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~C 142 (176)
.++..|+||++.|.+. ..++ |||.||..||..|+. .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3567899999999865 5567 999999999999998 45679998
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=3.4e-12 Score=84.37 Aligned_cols=48 Identities=38% Similarity=0.703 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc------CCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS------HSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~------~~~CP~CR~~~~~ 148 (176)
++..|+||++.|.++ ..++ |+|.||..|+..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 466899999999866 4688 9999999999999987 6679999998853
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=89.47 Aligned_cols=48 Identities=27% Similarity=0.723 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC-CCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-SNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~CR~~~~ 147 (176)
++..|+||++.|.++ +..++ |||.||..||..|+..+ .+||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 456899999999743 33377 99999999999999887 68999999984
No 32
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=4e-12 Score=80.41 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=40.5
Q ss_pred CCcccccccc-cccCCCee-eEcCCCCCccCHHHHHHHHhc-CCCCcccccccc
Q 040159 97 NEDTCAVCLG-DFKEGEQV-RVLPECLHLFHVPCIDMWLSS-HSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~-~~~~~~~~-~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~ 147 (176)
++..|+||++ .|.++... ..++ |||.||..|+..|+.. +..||+||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3568999999 78766543 4567 9999999999999765 467999999984
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=85.41 Aligned_cols=49 Identities=31% Similarity=0.573 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-------CCCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-------HSNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-------~~~CP~CR~~~~~ 148 (176)
.++..|+||++.|.+. ..++ |||.||..|+..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3567899999999865 4578 9999999999999976 5679999999853
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.25 E-value=3.2e-12 Score=83.62 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=41.1
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~ 147 (176)
.+..|+||++.|.++ ..++ |||.||..||..|+.. +.+||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 466899999999865 5567 9999999999999987 778999999884
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=87.41 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=41.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
+..|+||++.|.++ +..++ |||.||..|+..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45899999999853 33347 99999999999999999999999998854
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.23 E-value=5.5e-12 Score=87.67 Aligned_cols=49 Identities=29% Similarity=0.743 Sum_probs=42.2
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++..|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 46689999999974 444457 99999999999999999999999999854
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=3.7e-12 Score=90.91 Aligned_cols=52 Identities=25% Similarity=0.636 Sum_probs=44.1
Q ss_pred CCCcccccccccccCC----CeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEG----EQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.+...|+||++.|... .....++ |||.||..||..|+..+.+||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 3567899999999753 3446777 99999999999999999999999999843
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.7e-12 Score=77.29 Aligned_cols=42 Identities=38% Similarity=0.888 Sum_probs=35.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh---cCCCCccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS---SHSNCPLC 142 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~C 142 (176)
++..|+||++.|.++ ..++ |||.||..||..|+. .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 466899999999876 5577 999999999999954 56779998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.20 E-value=7.8e-12 Score=88.98 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC-CCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS-NCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~CR~~~~~ 148 (176)
++..|+||++.|.++ ..++ |||.||..||..|+..+. .||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345899999999865 5567 999999999999998554 89999999954
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=82.43 Aligned_cols=47 Identities=28% Similarity=0.612 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC--CCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH--SNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~CR~~~ 146 (176)
++..|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||.++
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 466899999999866 5566599999999999999753 5899999987
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=1.7e-11 Score=91.39 Aligned_cols=47 Identities=36% Similarity=0.727 Sum_probs=40.2
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~ 147 (176)
+..|+||++.|.+ .+..++ |||.||..||..|+.. +..||+||.++.
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3489999999985 455557 9999999999999987 778999999884
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.6e-11 Score=85.43 Aligned_cols=47 Identities=30% Similarity=0.635 Sum_probs=40.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC---CCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS---NCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~---~CP~CR~~~~~ 148 (176)
...|+||++.|.++ ..++ |||.||..|+..|+..+. .||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45799999999866 4477 999999999999998754 79999998854
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=2.5e-11 Score=85.71 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC-CCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS-NCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~CR~~~~~ 148 (176)
.++..|+||++.+.++ ..++ |||.||..||..|+..+. +||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456899999999865 5577 999999999999998765 89999998854
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.10 E-value=3.9e-11 Score=88.36 Aligned_cols=48 Identities=19% Similarity=0.471 Sum_probs=40.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC-CCccccccccCC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS-NCPLCRANANAA 149 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~CR~~~~~~ 149 (176)
...|+||++.|.++ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45899999999865 4578 999999999999998755 799999999654
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.08 E-value=4.7e-11 Score=83.87 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=40.4
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~~ 148 (176)
+..|+||++.+.++ ..++ |||.||..||..|+.. +.+||+||.++..
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45799999999754 4477 9999999999999987 7789999999854
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.08 E-value=1.9e-10 Score=75.57 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCCcccccccccccCCCe-eeEcCCCCCccCHHHHHHHHh-cCCCCccccccccCCC
Q 040159 96 CNEDTCAVCLGDFKEGEQ-VRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANANAAP 150 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~~~~ 150 (176)
.++.+|+||++.+...+. +.-++ |||.||..|+..++. .+..||.||+++...+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 356789999999864432 22345 999999999999875 3567999999995543
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.07 E-value=2e-11 Score=85.68 Aligned_cols=46 Identities=30% Similarity=0.735 Sum_probs=40.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~ 147 (176)
+..|+||++.|.+. ..++ |||.||..||..|+.. +..||+||..+.
T Consensus 15 ~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45899999999865 5667 9999999999999976 668999999885
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.06 E-value=4.1e-11 Score=75.79 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=39.8
Q ss_pred CCcccccccccccCCCeee-EcCCCCCc-cCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVR-VLPECLHL-FHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~-~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
++.+|.||++.+.+. +. .+| |||. |+..|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999986633 22 348 9999 899999999998899999999884
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.01 E-value=1.4e-10 Score=97.05 Aligned_cols=48 Identities=29% Similarity=0.830 Sum_probs=41.2
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-cCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~~ 148 (176)
....|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||.++..
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34689999999864 37788 999999999999998 67889999998844
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=8.9e-11 Score=72.18 Aligned_cols=44 Identities=30% Similarity=0.674 Sum_probs=37.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
++..|+||++.|.+. ..++ |||.||..|+..| ...||+||+.+.
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEee
Confidence 456899999999876 6788 9999999999873 668999999884
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.99 E-value=2.2e-10 Score=76.46 Aligned_cols=47 Identities=15% Similarity=0.031 Sum_probs=42.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.+..|+||++.|.++ .+++ |||.|+..||..|+..+.+||+||.++.
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 456899999999977 6788 9999999999999998899999999884
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.98 E-value=1.3e-10 Score=73.25 Aligned_cols=49 Identities=18% Similarity=0.434 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.+..|.||++...+. .+..+| |||. |+..|+..|...+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 356899999986533 223348 9998 999999999988889999999984
No 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.97 E-value=1e-10 Score=95.86 Aligned_cols=52 Identities=25% Similarity=0.721 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCeee----EcCCCCCccCHHHHHHHHhcC-----------CCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVR----VLPECLHLFHVPCIDMWLSSH-----------SNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~----~l~~C~H~fH~~Ci~~wl~~~-----------~~CP~CR~~~~~ 148 (176)
...+|+||++.+.++..+. ..+.|+|.||..|+.+||+.. .+||+||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4558999999998733332 223499999999999999752 359999998853
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=85.03 Aligned_cols=47 Identities=23% Similarity=0.450 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC-CCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS-NCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~-~CP~CR~~~ 146 (176)
.++..|+||++.|.++ ..++ |||.||..||..|+.... +||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3566899999999866 4567 999999999999998665 899999986
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.95 E-value=2.8e-10 Score=78.23 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
.+..|+||++.|.++ .+++ |||.|+..||..|+..+.+||+||.++.
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred HhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 466899999999977 6777 9999999999999998889999999884
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.92 E-value=5.1e-10 Score=76.66 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=42.5
Q ss_pred CCcccccccccccCCCeeeEcCCCC-CccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECL-HLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.+..|+||++.|.++ .+++ || |.|+..||..|+..+.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 466899999999977 5677 99 999999999999988899999998843
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.8e-10 Score=81.07 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=39.1
Q ss_pred CCcccccccccccCCCeeeEc-CCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVL-PECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
++..|+||++.|.++ ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 456899999999865 555 7 999999999999988 78999999984
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.91 E-value=2.4e-10 Score=74.22 Aligned_cols=44 Identities=25% Similarity=0.609 Sum_probs=37.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++..|.||++.+.+. ..+| |||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 345899999987643 6778 9999 999999998 889999998854
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.85 E-value=2.3e-09 Score=66.90 Aligned_cols=47 Identities=21% Similarity=0.614 Sum_probs=36.9
Q ss_pred CCcccccccccccCCCeeeEcCCCC--C---ccCHHHHHHHHhc--CCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECL--H---LFHVPCIDMWLSS--HSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~--H---~fH~~Ci~~wl~~--~~~CP~CR~~~~ 147 (176)
+...|.||+++.. +.+ ++| |. | .||..|+..|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 5668999999843 333 588 65 4 9999999999964 678999998874
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=81.44 Aligned_cols=49 Identities=24% Similarity=0.480 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC-CCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-SNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~CR~~~~~ 148 (176)
.++..|+||++.|.++ ..++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4566999999999865 4577 99999999999999764 489999998854
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6.3e-09 Score=66.44 Aligned_cols=45 Identities=29% Similarity=0.698 Sum_probs=37.4
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCccccccccC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.++..|.||++...+ +..+| |||. |+..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 346689999998654 58899 9999 99999983 5789999999855
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3.8e-09 Score=68.53 Aligned_cols=43 Identities=26% Similarity=0.620 Sum_probs=35.7
Q ss_pred CcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
+..|.||++.+.+. ..+| |||. |+..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45799999997654 6788 9999 99999954 4789999999854
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=4.7e-09 Score=70.95 Aligned_cols=48 Identities=21% Similarity=0.685 Sum_probs=40.2
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc--------CCCCcc--cccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS--------HSNCPL--CRAN 145 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~--------~~~CP~--CR~~ 145 (176)
+..+|+||++.+..++.+.+.+ |||.|+.+|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3558999999998877777777 9999999999999853 236999 9987
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=4.8e-09 Score=83.38 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-CCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-HSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-~~~CP~CR~~~~ 147 (176)
....|+||++.|.++ .+++ |||.|+..||..|+.. +.+||+||.++.
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 455899999999977 6788 9999999999999986 445999999884
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=4.5e-09 Score=71.23 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=37.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC------CCCcc--cccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH------SNCPL--CRAN 145 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~------~~CP~--CR~~ 145 (176)
.+..|+||++.|.++ ..++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456899999999865 4453399999999999999764 47999 9865
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=8.2e-09 Score=67.79 Aligned_cols=44 Identities=25% Similarity=0.595 Sum_probs=36.7
Q ss_pred CcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCccccccccCC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANANAA 149 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~~~ 149 (176)
+..|.||++.+.+ ...+| |||. |+..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4589999998754 47788 9999 999999876 4899999998654
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=2.1e-08 Score=75.71 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=40.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC-CCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-SNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-~~CP~CR~~~~ 147 (176)
....|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+|+.++.
T Consensus 105 ~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 455899999999976 5667 99999999999999764 57999999884
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.45 E-value=2.8e-08 Score=82.18 Aligned_cols=44 Identities=32% Similarity=0.717 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCc-cCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHL-FHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
++..|+||++.+.+. ..+| |||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 456899999998643 6678 9999 999999988 789999999854
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.4e-07 Score=74.85 Aligned_cols=46 Identities=24% Similarity=0.509 Sum_probs=38.1
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC--CCCcc--ccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH--SNCPL--CRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~--~~CP~--CR~~~ 146 (176)
+..|+||++.|.++ |.... |||.|++.||..|+..+ .+||+ ||..+
T Consensus 181 el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 181 ELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp CSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred eeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 34799999999844 55556 99999999999999764 46999 99977
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.33 E-value=1.4e-07 Score=58.76 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=38.9
Q ss_pred cccccccccccCCCeeeEc-CCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVL-PECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..|+||++-+.++ .++ + |||.|-..||..|+..+.+||+.+.++
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 4799999999855 444 6 999999999999999888899999988
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.27 E-value=4.8e-07 Score=61.33 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=39.0
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-cCCCCccccccccCCC
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-SHSNCPLCRANANAAP 150 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-~~~~CP~CR~~~~~~~ 150 (176)
.|.+|---+. ...|+.| |+|+|+-+|+..|.+ +.++||.|+.++.+..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 3677766554 6779999 999999999999985 4688999999986543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.18 E-value=1.3e-06 Score=68.66 Aligned_cols=49 Identities=22% Similarity=0.617 Sum_probs=39.6
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCC--CCccccccccCC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHS--NCPLCRANANAA 149 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~CR~~~~~~ 149 (176)
...|.||.+....+ ...+.|+|.||..|+..|++.+. .||.|+.++...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 55899999998876 33334999999999999998654 799999987443
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.95 E-value=0.0041 Score=38.96 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC----CCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH----SNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~----~~CP~CR~~~ 146 (176)
....|.||.+. ++ +..-..|...||..|++..+... -.||.|+...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999753 33 44444599999999999887543 3699997765
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.39 E-value=0.026 Score=36.77 Aligned_cols=34 Identities=24% Similarity=0.570 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
.++.|.||- .|..++...--- |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceecccc-ccccccHhhcccc
Confidence 678999994 455554444443 8999999999986
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.88 E-value=0.019 Score=38.38 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
++..|.||++.|.......-+. |+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3568999998754444444477 9999999999984
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.30 E-value=0.058 Score=35.87 Aligned_cols=50 Identities=22% Similarity=0.573 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCCeeeEcCCC-CCccCHHHHHHHHhcCCCCccccccccCCCC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPEC-LHLFHVPCIDMWLSSHSNCPLCRANANAAPP 151 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~~ 151 (176)
.+-..|-.|+-..+ -+.. | .|.++..|+...|.....||+|+.++.+...
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVE-CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEE-CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cCcccChhhccccC-----Ceee-ecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 45568999998744 1233 5 6999999999999999999999999966544
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.59 E-value=0.09 Score=32.03 Aligned_cols=45 Identities=27% Similarity=0.710 Sum_probs=31.4
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRA 144 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~ 144 (176)
..+..|.+|... + .+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356689999873 3 34444458999999999875432 335999965
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.49 E-value=0.037 Score=42.03 Aligned_cols=47 Identities=34% Similarity=0.601 Sum_probs=34.3
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
.+++.|.+|... ..+.....|...||..|+.+-+.. ...||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999754 345555568999999999876643 34599998654
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.28 E-value=0.052 Score=34.39 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=34.8
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~~~ 148 (176)
+...|.||..... ++....-..|.--||..|+..-... ...||.|+..+.+
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3457999988754 4334444458999999999765432 3459999877643
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.27 E-value=0.05 Score=33.21 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
.++..|.+|.+. + .+..-..|...||..|+..-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999853 3 33333358899999999864432 33599997643
No 81
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=90.07 E-value=0.75 Score=28.42 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040159 20 GLLGVIAGFMMVATYHCI 37 (176)
Q Consensus 20 ~~i~il~~~~vl~~~~~i 37 (176)
++++-++++++++.+.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444444433333
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.74 E-value=0.058 Score=40.13 Aligned_cols=46 Identities=37% Similarity=0.731 Sum_probs=33.1
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
+++.|.+|... ++ +.....|.-.||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 56789999854 44 4444459999999998776543 34599998654
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.60 E-value=0.38 Score=34.46 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=33.3
Q ss_pred CCCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-----------cCCCCccccc
Q 040159 95 DCNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-----------SHSNCPLCRA 144 (176)
Q Consensus 95 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----------~~~~CP~CR~ 144 (176)
+..++.|.+|.+. ++ +..-..|..+||..|+.+=+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567899999875 43 444445999999999996542 2346999964
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.52 E-value=0.081 Score=32.37 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=34.1
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-----cCCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-----SHSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~~ 146 (176)
+...|+||...+.++...+.-..|..=||..|+..-.. ....||.|+..-
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 45679999998865443444335888899999854321 244699997643
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.50 E-value=0.14 Score=29.78 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=28.8
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~ 144 (176)
.|.||...-..+ .+..-..|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488898764333 34444459999999999754332 234888864
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.77 E-value=0.17 Score=33.34 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=32.5
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCcccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRAN 145 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~ 145 (176)
.++..|.+|... ++ +..-..|.-.||..|+.+=+.. .-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999865 33 4444458899999999775533 3359999754
No 87
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.60 E-value=0.078 Score=34.82 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=36.7
Q ss_pred CcccccccccccC-CCeeeEcCCCCCccCHHHHHHHHh--------cCCCCccccccccCCC
Q 040159 98 EDTCAVCLGDFKE-GEQVRVLPECLHLFHVPCIDMWLS--------SHSNCPLCRANANAAP 150 (176)
Q Consensus 98 ~~~C~ICl~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl~--------~~~~CP~CR~~~~~~~ 150 (176)
+..|.+|...-.. +..+..-..|...||..|+.+-+. ....|+.|+.....+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 4579999976432 235555556999999999986543 2346999987664433
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.12 E-value=0.05 Score=32.54 Aligned_cols=45 Identities=33% Similarity=0.752 Sum_probs=30.2
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRA 144 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~ 144 (176)
.++..|.+|... + .+..-..|...||..|+.+-+.. .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 3 34444459999999999764432 224887753
No 89
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.05 E-value=0.12 Score=34.17 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=33.9
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
.++..|.||...-.. +.+..-..|...||..|+.+=+.. .-.||.|+..-
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 355689999887432 344444459999999999754432 33599997653
No 90
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=87.79 E-value=0.66 Score=32.63 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=32.6
Q ss_pred CCCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHH------h-----cCCCCccccc
Q 040159 95 DCNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL------S-----SHSNCPLCRA 144 (176)
Q Consensus 95 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl------~-----~~~~CP~CR~ 144 (176)
+..++.|.||.+. -.+..-..|-..||..|+.+-+ . ..-.|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3567789999865 3444445699999999999742 2 1346999955
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.43 E-value=0.14 Score=34.87 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCcccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCR 143 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR 143 (176)
.+++.|.||.+.=+..+.+.-- .|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 4677899998763222223333 49999999999877642 23466653
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.14 E-value=0.053 Score=32.89 Aligned_cols=46 Identities=30% Similarity=0.743 Sum_probs=32.1
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
++..|.+|... ++ +..-..|.-.||..|+.+-+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 56789999874 33 3444459999999999864432 33599997654
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.77 E-value=0.07 Score=33.03 Aligned_cols=45 Identities=36% Similarity=0.710 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCcccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRAN 145 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~ 145 (176)
++..|.||.+. ++ +..-..|.-.||..|+.+-+.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 56789999864 33 4444459999999999864432 3359999653
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.65 E-value=0.097 Score=32.18 Aligned_cols=51 Identities=16% Similarity=0.454 Sum_probs=35.1
Q ss_pred CCCcccccccccccC-CCeeeEcCCCCCccCHHHHHHHH-------hcCCCCccccccc
Q 040159 96 CNEDTCAVCLGDFKE-GEQVRVLPECLHLFHVPCIDMWL-------SSHSNCPLCRANA 146 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl-------~~~~~CP~CR~~~ 146 (176)
.++..|.||...... +..+..-..|.-.||..|+..-+ ...-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 356789999987532 34555555699999999987633 1344699996644
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=86.08 E-value=0.22 Score=37.26 Aligned_cols=48 Identities=19% Similarity=0.456 Sum_probs=34.4
Q ss_pred cccccccccccCCCe---eeEcCCCCCccCHHHHHHH------Hh-----cCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQ---VRVLPECLHLFHVPCIDMW------LS-----SHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~---~~~l~~C~H~fH~~Ci~~w------l~-----~~~~CP~CR~~~ 146 (176)
..|+||...|.+++. .+....|..=||..|..-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999998762 4444459999999997321 11 156799997753
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.04 E-value=0.2 Score=34.23 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=30.6
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRA 144 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~ 144 (176)
..|.||...-.+++.+..-..|...||..|+++-+.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688998653333345555559999999998765433 235888864
No 97
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.74 E-value=0.3 Score=30.70 Aligned_cols=50 Identities=14% Similarity=0.379 Sum_probs=33.9
Q ss_pred CCCcccccccccc-cCCCeeeEcCCCCCccCHHHHHHHH--hcCCCCcccccc
Q 040159 96 CNEDTCAVCLGDF-KEGEQVRVLPECLHLFHVPCIDMWL--SSHSNCPLCRAN 145 (176)
Q Consensus 96 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fH~~Ci~~wl--~~~~~CP~CR~~ 145 (176)
.++..|.||.+.- .+++.+..-..|.-.||..|+..-. ...-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3567899998763 2344555555699999999997532 123458888653
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.18 E-value=1.5 Score=29.69 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=29.0
Q ss_pred Cccccccccccc-----CCCeeeEcCCCCCccCHHHHHHH------H-hcCCCCcccc
Q 040159 98 EDTCAVCLGDFK-----EGEQVRVLPECLHLFHVPCIDMW------L-SSHSNCPLCR 143 (176)
Q Consensus 98 ~~~C~ICl~~~~-----~~~~~~~l~~C~H~fH~~Ci~~w------l-~~~~~CP~CR 143 (176)
...|.+|+..=. .++.+..-..|+..||..|+..+ + ...-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 457999987631 22344444459999999999531 2 2244577664
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=83.60 E-value=0.32 Score=31.83 Aligned_cols=50 Identities=14% Similarity=0.383 Sum_probs=34.1
Q ss_pred CCcccccccccc-cCCCeeeEcCCCCCccCHHHHHHHHh--cCCCCccccccc
Q 040159 97 NEDTCAVCLGDF-KEGEQVRVLPECLHLFHVPCIDMWLS--SHSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~-~~~~~~~~l~~C~H~fH~~Ci~~wl~--~~~~CP~CR~~~ 146 (176)
++..|.||...- .+++.+..-..|.-.||..|+..-+. ..-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 567899998763 23335555556889999999975431 234599997654
No 100
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=81.67 E-value=1 Score=28.88 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=26.0
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDM 131 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~ 131 (176)
+...|.+|...|..-..-..-..||.+|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45689999999985443334446999999999754
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=81.61 E-value=0.27 Score=36.80 Aligned_cols=45 Identities=29% Similarity=0.597 Sum_probs=30.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
++.|.+|... ++.+.- ..|...||..|+.+=+.. ...||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~C-d~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMC-NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCC-TTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeEC-CCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999854 443333 348899999999764432 33599997653
No 102
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=79.19 E-value=0.37 Score=32.61 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=33.9
Q ss_pred CcccccccccccCCCeeeEcC-CCCCccCHHHHHHHH----h------cCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLP-ECLHLFHVPCIDMWL----S------SHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~-~C~H~fH~~Ci~~wl----~------~~~~CP~CR~~~ 146 (176)
...|.||...|.+......-. .|.-=||..|+.--. . ....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999987655555443 588889999984221 1 344699998754
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.05 E-value=1.9 Score=29.18 Aligned_cols=50 Identities=22% Similarity=0.626 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCCeeeEcC--CCCCccCHHHHHHHHhc----CCCCccccccccCCCC
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLP--ECLHLFHVPCIDMWLSS----HSNCPLCRANANAAPP 151 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~~~~~~ 151 (176)
.+++.|.+|.+. + .+..-. .|...||..|+. |.. .-.||.|+..+...++
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~~ 68 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAA 68 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSBC
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCCC
Confidence 467789999842 3 344443 388999999997 432 2348887765544443
No 104
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=78.87 E-value=4.6 Score=24.87 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 040159 20 GLLGVIAGFMMVATYHCISLGCC 42 (176)
Q Consensus 20 ~~i~il~~~~vl~~~~~i~~~~c 42 (176)
.+++++.+++.++++..+.+.+|
T Consensus 9 ~~LivlGg~~~lll~~glcI~cc 31 (70)
T 2klu_A 9 MALIVLGGVAGLLLFIGLGIFFS 31 (70)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Confidence 45566777777777777777744
No 105
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.48 E-value=6.2 Score=22.27 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040159 15 SPLLIGLLGVIAGFMMVATYHCISLGCCCCNNN 47 (176)
Q Consensus 15 ~~~~i~~i~il~~~~vl~~~~~i~~~~c~~r~~ 47 (176)
++...+..+++. +++++++......|.+||+.
T Consensus 9 ~~~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 9 SPLTSIISAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp CSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred CcccchHHHHHH-HHHHHHHHHHHHhheehhhh
Confidence 344555666665 44444443333344444433
No 106
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=78.13 E-value=10 Score=23.79 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=22.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCC
Q 040159 9 QPGLQFSPLLIGLLGVIAGFMMVATYHCISLGCCCCNNNQQAQ 51 (176)
Q Consensus 9 ~~~~~~~~~~i~~i~il~~~~vl~~~~~i~~~~c~~r~~~~~~ 51 (176)
.+.++.++..-++.++++.+++.++-..+...||.-|-+...+
T Consensus 3 m~i~dhspttgvvtv~viliavaalg~li~gcwcylrlqri~q 45 (90)
T 1zza_A 3 MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQ 45 (90)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSSCS
T ss_pred ceeeccCCCcceEEehhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566665555554444445555555555666544443333
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.85 E-value=0.58 Score=34.15 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=32.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHH-----hcCCCCcccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL-----SSHSNCPLCRAN 145 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl-----~~~~~CP~CR~~ 145 (176)
+...| +|...+.++.....-..|..-||..|+..-. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34578 9998876444444444599999999985321 124569999763
No 108
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=77.52 E-value=5.8 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 16 PLLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 16 ~~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
+..++++++++++++++++..+..+
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777766555544444
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=77.36 E-value=1.8 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.566 Sum_probs=25.5
Q ss_pred CCcccccccccccCCCeeeEcC-CCCCccCHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLP-ECLHLFHVPCI 129 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~-~C~H~fH~~Ci 129 (176)
....|.+|...+.+++..+.-. .|.--||..|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3458999999988776555555 59999999998
No 110
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=76.40 E-value=2.1 Score=24.78 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=29.1
Q ss_pred ccccccccccCCCeeeEcC-CCCCccCHHHHHHH----HhcCCCCcccc
Q 040159 100 TCAVCLGDFKEGEQVRVLP-ECLHLFHVPCIDMW----LSSHSNCPLCR 143 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~-~C~H~fH~~Ci~~w----l~~~~~CP~CR 143 (176)
.|.+|...+.+++..+.-. .|.-=||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988886555444444 48888999997432 13456699885
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=75.76 E-value=2 Score=29.24 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=28.5
Q ss_pred ccccccccccc------CCCeeeEcCCCCCccCHHHHHHHH------h-cCCCCcccc
Q 040159 99 DTCAVCLGDFK------EGEQVRVLPECLHLFHVPCIDMWL------S-SHSNCPLCR 143 (176)
Q Consensus 99 ~~C~ICl~~~~------~~~~~~~l~~C~H~fH~~Ci~~wl------~-~~~~CP~CR 143 (176)
+.|.+|+..-. +++.+..-..|+..||..|+.... . ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987642 123444444599999999987542 1 244577663
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.54 E-value=0.3 Score=31.26 Aligned_cols=44 Identities=36% Similarity=0.698 Sum_probs=28.0
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----C-CCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----H-SNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~-~~CP~CR~ 144 (176)
.|.+|...-. ++.+..-..|...||..|+.+-|.. . -.||.|++
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5777766532 2344444458999999999865533 2 45888875
No 113
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=75.53 E-value=1.4 Score=26.66 Aligned_cols=43 Identities=33% Similarity=0.642 Sum_probs=30.7
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLC 142 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~C 142 (176)
..|.-|...|.+.. .-.-++|++.|+.+|=.---..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986432 23455699999999954444555679987
No 114
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.29 E-value=1.7 Score=27.48 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=31.2
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-----cCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-----SHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~~ 146 (176)
...| ||...+.+....+.-..|..=||..|+.--.. ....||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 99988764443334445888899999853221 244699997654
No 115
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=74.57 E-value=11 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 15 SPLLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 15 ~~~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
.+..++++++++++++++++..+..+
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777766655554444
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=71.98 E-value=2.8 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=24.3
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHH
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCID 130 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~ 130 (176)
+..|.+|...|..-..-..-..||.+|+..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999997543333344699999999964
No 117
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.87 E-value=0.68 Score=30.82 Aligned_cols=43 Identities=19% Similarity=0.458 Sum_probs=29.1
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc---CCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS---HSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~---~~~CP~CR~ 144 (176)
.| ||......+..|.-- .|.--||..|+..-... ...||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd-~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCD-KCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBT-TTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcC-CCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 57 898776655444444 49999999998653222 235999963
No 118
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.68 E-value=1.7 Score=27.22 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=30.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHH---------hcCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL---------SSHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl---------~~~~~CP~CR~~~ 146 (176)
...| ||...+..+.-|.-- .|..=||..|+..-. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3457 898887644344433 489889999984221 2456799997644
No 119
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.66 E-value=0.57 Score=29.86 Aligned_cols=44 Identities=27% Similarity=0.636 Sum_probs=28.7
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-----CCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-----HSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~CR~ 144 (176)
.|.||...=. +..+..-..|...||..|+.+=+.. .-.||.|+.
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 7899986533 3344444459999999998754322 235887754
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.07 E-value=9 Score=25.04 Aligned_cols=52 Identities=21% Similarity=0.484 Sum_probs=35.5
Q ss_pred CCcccccccccccC---CCeeeEcCCCCCccCHHHHHHHH-hcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKE---GEQVRVLPECLHLFHVPCIDMWL-SSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~fH~~Ci~~wl-~~~~~CP~CR~~~~~ 148 (176)
....|.||-+++-. ++.....-.|+--.++.|++-=. ..+..||.|+..+.+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34589999998643 33222222477788999986544 457889999998843
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=70.91 E-value=3.2 Score=26.56 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
+...|.+|...|..-..-..-..||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999999855433444469999999997543
No 122
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=68.92 E-value=5.7 Score=25.53 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=32.6
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcC-----CCCccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSH-----SNCPLC 142 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~-----~~CP~C 142 (176)
....|.+|.+.+++..-|..-..=.|.|+-.|-...++++ ..||-=
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 3457999999999875444222237999999999988652 237665
No 123
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=67.99 E-value=13 Score=20.62 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Q 040159 15 SPLLIGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 15 ~~~~i~~i~il~~~~vl~~~~~i~~~ 40 (176)
.+..+++++++.++++++++..+..+
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777665555544
No 124
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=67.89 E-value=0.76 Score=28.63 Aligned_cols=44 Identities=36% Similarity=0.698 Sum_probs=27.7
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-----CCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-----HSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~CR~ 144 (176)
.|.||...-. +..+..-..|...||..|+.+=+.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5677875422 2344444458999999999754322 335888864
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=67.87 E-value=3.1 Score=28.82 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDM 131 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~ 131 (176)
....|.+|...|..-..-..-..||++|+..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34589999999975443334446999999999643
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=67.64 E-value=0.74 Score=31.94 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
....|..|-..|..-..-..-..||.+|+..|..........|-.|-.-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 45689999999875433334446999999999766555555687775443
No 127
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.35 E-value=3.3 Score=26.91 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=26.4
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
+...|.+|...|..-..-..-..||++|+..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999999754433444469999999997654
No 128
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=67.19 E-value=14 Score=20.69 Aligned_cols=27 Identities=4% Similarity=-0.116 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 040159 20 GLLGVIAGFMMVATYHCISLGCCCCNN 46 (176)
Q Consensus 20 ~~i~il~~~~vl~~~~~i~~~~c~~r~ 46 (176)
+..+++.++++++++......|.++|+
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 344455555544444444334444443
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.18 E-value=0.39 Score=32.86 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=30.1
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
.|.||...-..+ .+..-..|...||..|+.+=+.. .-.||.|+...
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 688888764334 34444459999999999764332 23488886654
No 130
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.80 E-value=16 Score=20.58 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=4.9
Q ss_pred HHHHHHHhhhcCC
Q 040159 33 TYHCISLGCCCCN 45 (176)
Q Consensus 33 ~~~~i~~~~c~~r 45 (176)
+.+.++.+..+.+
T Consensus 28 ~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 28 LTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHTTCSS
T ss_pred HHHHHHhhhhhhh
Confidence 3333333334433
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.41 E-value=3.6 Score=26.68 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=34.5
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-------CCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-------HSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-------~~~CP~CR~~~~~ 148 (176)
+...|.+|...|..-..-..-..||++|+..|....+.. ...|-.|-..+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 445899999999855433444469999999997653211 1238888666643
No 132
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.08 E-value=4.3 Score=25.90 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=24.5
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCID 130 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~ 130 (176)
+...|.+|...|..-..-..-..||.+|+..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4568999999997543333334599999999953
No 133
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.04 E-value=1.4 Score=29.82 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=15.6
Q ss_pred CCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 119 ECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 119 ~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
+||+.| ..-+.....||.|++.--
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCB
T ss_pred hCcCee-----cccCCCCCCCcCCCCCcc
Confidence 499998 111233467999988663
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.99 E-value=3 Score=31.52 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=25.9
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDM 131 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~ 131 (176)
++..|.+|...|..-..-.....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35799999999975443344446999999999644
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.59 E-value=3.3 Score=31.59 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMW 132 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~w 132 (176)
.+..|.+|...|..-..-.....||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999999855433444469999999997543
No 136
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.12 E-value=1.3 Score=34.07 Aligned_cols=44 Identities=36% Similarity=0.698 Sum_probs=26.4
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc-----CCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS-----HSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~-----~~~CP~CR~ 144 (176)
.|.+|...=. +..+..-..|...||..|+.+=+.. .-.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 6888876422 2344444459999999999864432 235999965
No 137
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=64.04 E-value=4.5 Score=37.47 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=40.3
Q ss_pred CcccccccccccCCCeeeEcCCCC-CccCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECL-HLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~-H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
...|+|-++-+.++ .++| -| +.|=..+|..|+..+.+||+=|.++..
T Consensus 891 ~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 891 EFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 44799999999877 6777 76 689999999999999999999998843
No 138
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.30 E-value=3.6 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCCccccccccccc-CCCeeeEcCCCCCccCHHHHHHHHhc-C---CCCcccccc
Q 040159 96 CNEDTCAVCLGDFK-EGEQVRVLPECLHLFHVPCIDMWLSS-H---SNCPLCRAN 145 (176)
Q Consensus 96 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fH~~Ci~~wl~~-~---~~CP~CR~~ 145 (176)
.++..|++|...|. ....-+.-..|+|.+|..|-..--.. + -.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 45779999999994 22233444469999999995432111 1 128788653
No 139
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.44 E-value=2.2 Score=26.96 Aligned_cols=48 Identities=23% Similarity=0.530 Sum_probs=30.0
Q ss_pred CcccccccccccCCCeeeEc-CCCCCccCHHHHHHHHh---------cCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVL-PECLHLFHVPCIDMWLS---------SHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l-~~C~H~fH~~Ci~~wl~---------~~~~CP~CR~~~ 146 (176)
...| ||-.....+.-|.-- +.|..=||..|+.---. .+..||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3467 898875544333332 04888999999853221 245699997654
No 140
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=62.15 E-value=3.9 Score=25.40 Aligned_cols=45 Identities=24% Similarity=0.622 Sum_probs=27.7
Q ss_pred CCcccccccccccCCCeeeEcCC--CC-CccCHHHHHHHHhc----CCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPE--CL-HLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
+...| ||..... + ..+.-.. |. .-||..|+. +.. +-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987642 3 2333333 55 589999997 322 33599997654
No 141
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.11 E-value=3.8 Score=26.84 Aligned_cols=45 Identities=24% Similarity=0.622 Sum_probs=27.5
Q ss_pred CCcccccccccccCCCeeeEcCC--CC-CccCHHHHHHHHhc----CCCCccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPE--CL-HLFHVPCIDMWLSS----HSNCPLCRANA 146 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~CR~~~ 146 (176)
+...| ||..... + ..+.-.. |. .-||..|+. +.. +..||.|+...
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 9988643 3 2222223 44 579999997 322 34599997654
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=61.27 E-value=1.5 Score=29.53 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=29.3
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHhc----CCCCcccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSS----HSNCPLCRAN 145 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~----~~~CP~CR~~ 145 (176)
.|.+|...-.+. .+..-..|...||..|+.+=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 577887663332 34444458999999999764432 3358888554
No 143
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.86 E-value=6.1 Score=23.74 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=28.1
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+...+.+... -+..||..| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCC
Confidence 35799999988764333322 577899988 46888887774
No 144
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=57.97 E-value=8.3 Score=27.92 Aligned_cols=44 Identities=27% Similarity=0.714 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCCeeeEcC--CCCCccCHHHHHHHHhc----------CCCCcccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLP--ECLHLFHVPCIDMWLSS----------HSNCPLCR 143 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fH~~Ci~~wl~~----------~~~CP~CR 143 (176)
+.+..|.||-+. ..+..-. .|...|+..||+..+.. .-.|=+|.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 456689999864 4555554 59999999999998633 23488884
No 145
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=55.21 E-value=8.1 Score=23.76 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=15.0
Q ss_pred CCCCCchHHHHHHHHHHHHH-HHHHHHHHHHhhhcCC
Q 040159 10 PGLQFSPLLIGLLGVIAGFM-MVATYHCISLGCCCCN 45 (176)
Q Consensus 10 ~~~~~~~~~i~~i~il~~~~-vl~~~~~i~~~~c~~r 45 (176)
+.+.+..-.+-+.+++++++ +++.+++++..-|+.+
T Consensus 8 dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk 44 (67)
T 2jp3_A 8 SPFYYDWESLQLGGLIFGGLLCIAGIALALSGKCKCR 44 (67)
T ss_dssp SGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCcccchHHheecchhhHHHHHHHHHHHHHcCccccc
Confidence 44444433344444333333 3344444444445443
No 146
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.60 E-value=6.9 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=27.1
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+.|-+.+...+.+... -+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccC
Confidence 4699999888865433332 457888888 46778877773
No 147
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=54.41 E-value=23 Score=20.63 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=20.5
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 040159 6 AGHQPGLQFSPLLIGLLGVIAGFMMVATY 34 (176)
Q Consensus 6 ~~~~~~~~~~~~~i~~i~il~~~~vl~~~ 34 (176)
++.++....+|-.+++++++++++++++=
T Consensus 20 ~ee~~giKi~P~~Vl~~si~~i~~V~~L~ 48 (53)
T 1rh5_C 20 DETFSKIRVKPEHVIGVTVAFVIIEAILT 48 (53)
T ss_dssp -CCCCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCccccCCeehhhhHHHHHHHHHHHH
Confidence 34455788888888888887777766553
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.37 E-value=9.7 Score=23.47 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=28.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+.|-+.+..++.+... -+..||.+| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccC
Confidence 35799999988866554322 467899988 46888887774
No 149
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=53.14 E-value=2.3 Score=26.27 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=28.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh---cCCCCccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS---SHSNCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~---~~~~CP~CR~ 144 (176)
+...| ||...+..+.-|. -..|..=||..|+..-.. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIq-Cd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEE-CTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEE-CCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34468 9988765332333 334888899999853221 2345888864
No 150
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.15 E-value=8.8 Score=23.90 Aligned_cols=40 Identities=28% Similarity=0.622 Sum_probs=29.8
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
....|+-|-+.+.+++.+..+ +..||.+| ..|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~---~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLAL---DKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEET---TEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEEC---Cccccccc--------CCcCcCCCCcC
Confidence 345799999998766655443 57899988 56888888774
No 151
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=52.00 E-value=4.1 Score=24.29 Aligned_cols=43 Identities=28% Similarity=0.651 Sum_probs=26.6
Q ss_pred CCcccccccccccCCCeeeEcCC--CC-CccCHHHHHHHHhc----CCCCccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPE--CL-HLFHVPCIDMWLSS----HSNCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~CR~ 144 (176)
+...| ||.... .+ ....-.. |. .-||..|+. +.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34467 898764 23 3444334 55 689999997 322 335999864
No 152
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.78 E-value=11 Score=22.65 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=23.6
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..|+-|-+.+...+.+... -+..||..| ..|-.|+.+|
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBC
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcC
Confidence 4688887776643322222 457788877 4577777766
No 153
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.76 E-value=11 Score=23.57 Aligned_cols=41 Identities=32% Similarity=0.553 Sum_probs=29.7
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
....|+-|-+.+...+.+.. -+..||..| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 34679999998876655542 467899999 467888777743
No 154
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.62 E-value=11 Score=22.96 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=29.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+..++.+.. -+..||.+| ..|..|+.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccC
Confidence 4579999999887665543 467899988 46888988874
No 155
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.53 E-value=1.4 Score=27.41 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=30.5
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHH----hcCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL----SSHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl----~~~~~CP~CR~~~ 146 (176)
..| ||...+.+++..+.-..|..=||..|+..-- .....||.|+..-
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 368 7988776654344444588889999985432 1234599997643
No 156
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.31 E-value=9 Score=23.27 Aligned_cols=42 Identities=26% Similarity=0.522 Sum_probs=29.0
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
....|+-|-+.+...+.+... -+..||..| ..|-.|+.++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 346799999988754444322 467899988 467888777743
No 157
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.99 E-value=7.9 Score=27.79 Aligned_cols=46 Identities=26% Similarity=0.523 Sum_probs=29.3
Q ss_pred CCcccccccccccC--CCeeeEcCCCCCccCHHHHHHHHhcCC--CCccccc
Q 040159 97 NEDTCAVCLGDFKE--GEQVRVLPECLHLFHVPCIDMWLSSHS--NCPLCRA 144 (176)
Q Consensus 97 ~~~~C~ICl~~~~~--~~~~~~l~~C~H~fH~~Ci~~wl~~~~--~CP~CR~ 144 (176)
++..|++|...|.. +.. +.-.+|+|.+|..|-. |..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCC-CcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 46799999998753 223 3444599999999962 332221 2666654
No 158
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.89 E-value=6.5 Score=24.00 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=4.3
Q ss_pred cccccccccc
Q 040159 100 TCAVCLGDFK 109 (176)
Q Consensus 100 ~C~ICl~~~~ 109 (176)
.|..|...+.
T Consensus 29 ~C~~C~~~L~ 38 (76)
T 1iml_A 29 KCEKCGKTLT 38 (76)
T ss_dssp BCTTTCCBCC
T ss_pred CccccCccCC
Confidence 3444444443
No 159
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.84 E-value=8.9 Score=23.04 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=27.7
Q ss_pred CcccccccccccC--CCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKE--GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+.. .+.+... -+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCC
Confidence 4579999988875 2233222 578899998 46888888773
No 160
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=50.64 E-value=15 Score=30.28 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=28.1
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHH--HHHHHHhc--CCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVP--CIDMWLSS--HSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~--Ci~~wl~~--~~~CP~CR~~~ 146 (176)
.|++=+..+. ..++-.. |.|.-|.+ =+-....+ ...||+|...+
T Consensus 251 ~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 251 QCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp BCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred cCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 6888777765 5677776 99973333 22222222 34699998876
No 161
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.28 E-value=4.1 Score=24.34 Aligned_cols=42 Identities=26% Similarity=0.643 Sum_probs=25.5
Q ss_pred CcccccccccccCCCeeeEcCC--CC-CccCHHHHHHHHhc----CCCCccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPE--CL-HLFHVPCIDMWLSS----HSNCPLCRA 144 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl~~----~~~CP~CR~ 144 (176)
...| ||..... + ....-.. |. .-||..|+. +.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4466 8987632 3 3333334 44 579999997 322 335998864
No 162
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=49.32 E-value=12 Score=31.08 Aligned_cols=45 Identities=20% Similarity=0.587 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCeeeEcC--CCCCccCHHHHHHHHhc----------CCCCccccc
Q 040159 96 CNEDTCAVCLGDFKEGEQVRVLP--ECLHLFHVPCIDMWLSS----------HSNCPLCRA 144 (176)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fH~~Ci~~wl~~----------~~~CP~CR~ 144 (176)
+.+..|.+|-+. ..+.... .|...||..||+..+.. +-.|=+|.-
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 456689999864 3444444 59999999999998722 345888853
No 163
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.71 E-value=7.8 Score=25.79 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=10.3
Q ss_pred cCHHHHHHHHh
Q 040159 124 FHVPCIDMWLS 134 (176)
Q Consensus 124 fH~~Ci~~wl~ 134 (176)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 164
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.65 E-value=7.8 Score=25.83 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=10.6
Q ss_pred cCHHHHHHHHhc
Q 040159 124 FHVPCIDMWLSS 135 (176)
Q Consensus 124 fH~~Ci~~wl~~ 135 (176)
||..|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 165
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=48.35 E-value=17 Score=29.76 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=28.2
Q ss_pred ccccccccccCCCeeeEcCCCCCc--cCHHHHHHHHhc--CCCCccccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHL--FHVPCIDMWLSS--HSNCPLCRANA 146 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~--fH~~Ci~~wl~~--~~~CP~CR~~~ 146 (176)
.|+|=+..++ ..+|-.. |.|. |=..=+-....+ ...||+|.+.+
T Consensus 217 ~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 217 MCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp BCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 5888777765 5567776 9997 333333333222 34699998876
No 166
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=47.36 E-value=9.4 Score=25.80 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=20.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHh
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS 134 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~ 134 (176)
-..|..|-..+..++..... =+..||..|....+.
T Consensus 36 CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred cCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 34677777776544443333 466777777766653
No 167
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=47.03 E-value=15 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=16.0
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHH
Q 040159 7 GHQPGLQFSPLLIGLLGVIAGFMMVA 32 (176)
Q Consensus 7 ~~~~~~~~~~~~i~~i~il~~~~vl~ 32 (176)
+..+.+...|..++++.+++++++++
T Consensus 61 dds~GlKV~P~~VLv~sl~Fi~~Vi~ 86 (96)
T 2wwb_C 61 EDSPGLKVGPVPVLVMSLLFIASVFM 86 (96)
T ss_dssp CCSCCCCCSSCSHHHHHHHHHHHHHH
T ss_pred cCCCceEECCEEehhhHHHHHHHHHH
Confidence 34456777777777766665555443
No 168
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=46.50 E-value=50 Score=20.42 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhcCCC
Q 040159 30 MVATYHCISLGCCCCNN 46 (176)
Q Consensus 30 vl~~~~~i~~~~c~~r~ 46 (176)
+++.+++++...|+.+.
T Consensus 28 fi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 28 FILGILIVLSRRCRCKF 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccccCC
Confidence 33444444444454433
No 169
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=46.48 E-value=31 Score=18.05 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC
Q 040159 23 GVIAGFMMVATYHCISLGCCCCNN 46 (176)
Q Consensus 23 ~il~~~~vl~~~~~i~~~~c~~r~ 46 (176)
..+++.+++.++..++.+|...|.
T Consensus 6 ~~IIaPivVGvvl~L~d~WLn~r~ 29 (33)
T 2kv5_A 6 SLVIAPIFVGLVLEMISRVLDEED 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 344555666666677777775554
No 170
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=46.06 E-value=12 Score=22.17 Aligned_cols=41 Identities=27% Similarity=0.568 Sum_probs=30.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
...|+-|-..+...+.+... =+..||..|. .|-.|..++..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 45799999998876654432 4678999985 68888887743
No 171
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=44.97 E-value=15 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=24.6
Q ss_pred CCcccccccccccCCCeeeEcCCC-CCccCHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPEC-LHLFHVPCIDMW 132 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C-~H~fH~~Ci~~w 132 (176)
+..-|.||.++ ..++-+. | +-+|+..|...-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 34479999987 6788887 9 889999997654
No 172
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=44.85 E-value=4.6 Score=33.33 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHH
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWL 133 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl 133 (176)
....|.+|...|..-..-.....||++||..|...++
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4568999999987443223333599999999987664
No 173
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.83 E-value=12 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=27.4
Q ss_pred CcccccccccccC--CCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKE--GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+.. ...+... -+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 3579999998875 2233222 567899999 46788877773
No 174
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=43.15 E-value=42 Score=18.55 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 040159 19 IGLLGVIAGFMMVATYHCISLG 40 (176)
Q Consensus 19 i~~i~il~~~~vl~~~~~i~~~ 40 (176)
.++.+++++++++.++..+..+
T Consensus 11 ~Iv~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 11 VVLLSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333333
No 175
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=41.85 E-value=42 Score=18.25 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=14.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040159 12 LQFSPLLIGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 12 ~~~~~~~i~~i~il~~~~vl~~~~~i~~ 39 (176)
+.-+..+++++++.++++..++++.+..
T Consensus 7 fs~p~i~lII~~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 7 FSEPEITLIIFGVMAGVIGTILLISYGI 34 (40)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666655555444444333
No 176
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=41.56 E-value=42 Score=18.16 Aligned_cols=27 Identities=4% Similarity=-0.033 Sum_probs=16.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040159 12 LQFSPLLIGLLGVIAGFMMVATYHCIS 38 (176)
Q Consensus 12 ~~~~~~~i~~i~il~~~~vl~~~~~i~ 38 (176)
..++.+++-+++++.-++.++++|+..
T Consensus 8 ~~LPsI~VPlVglvfPai~Mallf~yI 34 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666555543
No 177
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=41.11 E-value=35 Score=18.30 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 040159 23 GVIAGFMMVATYHCISLGCCC 43 (176)
Q Consensus 23 ~il~~~~vl~~~~~i~~~~c~ 43 (176)
+++++.+.+.+.-.++..|.+
T Consensus 8 GIVlGlipvtlaGLfv~Ay~Q 28 (37)
T 1q90_G 8 GIVLGLVPVTIAGLFVTAYLQ 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHH
Confidence 333444433333333334433
No 178
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=39.58 E-value=21 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.330 Sum_probs=11.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHH
Q 040159 8 HQPGLQFSPLLIGLLGVIAGFMMV 31 (176)
Q Consensus 8 ~~~~~~~~~~~i~~i~il~~~~vl 31 (176)
..+.+..+|..++++.++++++++
T Consensus 53 ds~GlKV~P~~VLv~sl~FIa~Vi 76 (87)
T 2ww9_C 53 EANGFRVDSLVVLFLSVGFIFSVI 76 (87)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH
T ss_pred CCCceEEcCeeehhhHHHHHHHHH
Confidence 344566677777666665544443
No 179
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=39.47 E-value=44 Score=20.83 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=16.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCCCc
Q 040159 7 GHQPGLQFSPLLIGLLGVIAGFM-MVATYHCISLGCCCCNNNQ 48 (176)
Q Consensus 7 ~~~~~~~~~~~~i~~i~il~~~~-vl~~~~~i~~~~c~~r~~~ 48 (176)
+.++.+.+..-.+-+.+++++++ +++.++++....|+.+..+
T Consensus 7 ~~~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~~q 49 (74)
T 2zxe_G 7 DNDERFTYDYYRLRVVGLIVAAVLCVIGIIILLAGKCRCKFNQ 49 (74)
T ss_dssp TCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred CCCCCcccchHHheeccchhHHHHHHHHHHHHHcCccccCCCC
Confidence 44445555544444444444443 3344444455555544443
No 180
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.38 E-value=21 Score=22.50 Aligned_cols=39 Identities=23% Similarity=0.617 Sum_probs=26.6
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+...+.+. . -+..||..| ..|-.|..+|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCC
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCC
Confidence 457888888887655442 2 567888888 35677766663
No 181
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=39.05 E-value=44 Score=17.63 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 040159 19 IGLLGVIAGFMMVATY 34 (176)
Q Consensus 19 i~~i~il~~~~vl~~~ 34 (176)
+.+++.++.++.+.++
T Consensus 12 V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 12 ILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 182
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.93 E-value=18 Score=22.15 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=26.6
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+... . +.. -+..||..|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~-~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-F--VKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSS-C--EEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccCc-E--EEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 45799999888743 2 232 5788999984 5777877763
No 183
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.92 E-value=9.4 Score=23.57 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=27.0
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+.|-+.+.+++.+.. -+..||.+|. .|-.|+.+|.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEEC
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCC
Confidence 4579999988876664433 4678888883 5777877773
No 184
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.77 E-value=6.8 Score=19.86 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=7.8
Q ss_pred CCCCccccccc
Q 040159 136 HSNCPLCRANA 146 (176)
Q Consensus 136 ~~~CP~CR~~~ 146 (176)
+..||+|+..+
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 34699998755
No 185
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.10 E-value=14 Score=23.39 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=27.8
Q ss_pred CCcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 97 NEDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
....|+-|-+.+. ++.+. . -+..||..| ..|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCC
Confidence 3457999999885 33332 2 578899988 46888888874
No 186
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.69 E-value=9.4 Score=20.24 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=5.5
Q ss_pred CCccccccc
Q 040159 138 NCPLCRANA 146 (176)
Q Consensus 138 ~CP~CR~~~ 146 (176)
.||+|...+
T Consensus 7 iCP~C~~~l 15 (34)
T 3mjh_B 7 ICPQCMKSL 15 (34)
T ss_dssp ECTTTCCEE
T ss_pred CCcHHHHHc
Confidence 366666655
No 187
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=36.54 E-value=7.3 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=16.2
Q ss_pred CCCCccCHHHHHHHHhcCCCCccccccccCCC
Q 040159 119 ECLHLFHVPCIDMWLSSHSNCPLCRANANAAP 150 (176)
Q Consensus 119 ~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~~~ 150 (176)
.|||.|-.. .....||.|-+++.+.+
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBEEECC
T ss_pred CCCCcccCC------CCCCcCCCCCCcceeCC
Confidence 377776533 22346999988875544
No 188
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=36.03 E-value=6.8 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=12.4
Q ss_pred HHHHhcCCCCcccccccc
Q 040159 130 DMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 130 ~~wl~~~~~CP~CR~~~~ 147 (176)
+.|+..--.||.|+.++.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 345555667999998874
No 189
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.54 E-value=25 Score=20.76 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=25.8
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
...|+-|-+.+..+ . +.. -+..||.+| ..|-.|+.+|
T Consensus 5 ~~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L 41 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-G--VTY-REQPWHKEC--------FVCTACRKQL 41 (70)
T ss_dssp CCBCSSSCCBCCSS-E--EES-SSSEEETTT--------SBCSSSCCBC
T ss_pred CCCCcccCCeeccc-e--EEE-CccccCCCC--------CccCCCCCcC
Confidence 34688898888643 2 232 567889888 4688888777
No 190
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.12 E-value=24 Score=21.63 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=26.6
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+-|-..+...+.+... =+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccC
Confidence 4799999888743332221 467899988 46788887774
No 191
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.91 E-value=7.5 Score=23.38 Aligned_cols=44 Identities=25% Similarity=0.605 Sum_probs=26.0
Q ss_pred CcccccccccccCCCeeeEcCC--CC-CccCHHHHHHHH--hcCCCCccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPE--CL-HLFHVPCIDMWL--SSHSNCPLCRA 144 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~fH~~Ci~~wl--~~~~~CP~CR~ 144 (176)
...| ||.... .+ ..+.-.. |. .-||..|+..-- ..+-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4467 898753 34 3333334 44 789999986211 12345999965
No 192
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.77 E-value=20 Score=20.99 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=27.1
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+. ++. +.. -+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCC
Confidence 346999998887 332 233 577899988 46888888773
No 193
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.69 E-value=29 Score=21.69 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=27.4
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+... . +.. -+..||.+| ..|-.|+..|.
T Consensus 25 ~~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVGA-V--VKA-RDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCSC-C--EES-SSCEECTTT--------CCCSSSCCCTT
T ss_pred CCCcccCCCEeccc-E--EEE-CCceECccC--------CEecCCCCCCC
Confidence 45799999988742 2 222 578899998 46888888774
No 194
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=33.59 E-value=5.8 Score=22.79 Aligned_cols=41 Identities=22% Similarity=0.546 Sum_probs=24.5
Q ss_pred cccccccCCCeeeEcCCCCCccCHHHHHHHH---hcCCCCccccc
Q 040159 103 VCLGDFKEGEQVRVLPECLHLFHVPCIDMWL---SSHSNCPLCRA 144 (176)
Q Consensus 103 ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl---~~~~~CP~CR~ 144 (176)
||......+.-|. -..|+.=||..|+..-- ...-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~-Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEE-CTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEE-cCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766554333333 33488889999985322 12345888865
No 195
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.35 E-value=17 Score=18.45 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=17.9
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHH
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPC 128 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~C 128 (176)
+.|+.|-...-..+.+. . -|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccC
Confidence 46888887765544333 2 467888888
No 196
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.99 E-value=24 Score=20.81 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=25.6
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
...|+-|-+.+.. ..+.. -+..||.+|. .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCC
Confidence 4568888888763 22222 4677888883 67788777743
No 197
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=32.32 E-value=25 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=18.5
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHH
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCI 129 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci 129 (176)
.|..|-..+...+.+... -++.||..|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF 98 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF 98 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC
Confidence 588888877655433322 5678888884
No 198
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=31.28 E-value=6.8 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=12.1
Q ss_pred HHHhcCCCCccccccccC
Q 040159 131 MWLSSHSNCPLCRANANA 148 (176)
Q Consensus 131 ~wl~~~~~CP~CR~~~~~ 148 (176)
.|+..--.||+|+.++.-
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 455555678888887743
No 199
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=31.17 E-value=30 Score=18.53 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 040159 23 GVIAGFMMVATYHCISLGCCCCN 45 (176)
Q Consensus 23 ~il~~~~vl~~~~~i~~~~c~~r 45 (176)
+++++.+.+.+.-.++..|.+.|
T Consensus 8 GIVlGlipvtl~GLfv~Ay~Qyr 30 (37)
T 1vf5_G 8 GLVLGLVFATLGGLFYAAYQQYK 30 (37)
T ss_dssp -CHHHHHHHHHHHHTHHHHHHTC
T ss_pred hHHHhhHHHHHHHHHHHHHHHHh
Confidence 33334443333333344444433
No 200
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.81 E-value=21 Score=21.52 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=27.0
Q ss_pred cccccccccccC---CCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKE---GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~---~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+-|-+.+.. ...+... =+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCC
Confidence 469999988874 2222222 467899988 46888988873
No 201
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.39 E-value=29 Score=20.88 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=23.7
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+-|-..+... . +.. -+..||.+| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~-~--v~a-~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGR-V--LEA-GEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSC-C--BCC-SSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCe-e--EEe-CCCCCCCCc--------CEeCCCCCCCC
Confidence 4688888777642 2 222 567888888 45777776663
No 202
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=30.00 E-value=15 Score=22.76 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=29.4
Q ss_pred ccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-----cCCCCcccccc
Q 040159 100 TCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-----SHSNCPLCRAN 145 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~ 145 (176)
.--||...+..+...+.-..|.-=||..|+..--. ....||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33489887654434444445888899999954321 23469999764
No 203
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.50 E-value=44 Score=20.37 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=26.7
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+. +..+ .. -+..||.+| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IF-KNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CC-SSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEec-ceEE--EE-CcceeCCCC--------CEeCCCCCccC
Confidence 457999998887 3222 22 577899888 46888888774
No 204
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.38 E-value=41 Score=21.30 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=24.6
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|..|...+... ..... =+..|+..|... .-...|..|..++.
T Consensus 34 F~C~~C~~~L~~~-~~~~~--~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANE-TFVAK--DNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSS-CCEEE--TTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CcccccCCCCCcC-eeECc--CCEEEChhHhhh--hcCCccccCCCccc
Confidence 4677777766432 22111 356677777532 12456888877773
No 205
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.05 E-value=24 Score=23.85 Aligned_cols=39 Identities=23% Similarity=0.476 Sum_probs=28.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+.....+.. -+..||..| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999998875533333 567899999 57889988884
No 206
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.71 E-value=25 Score=20.71 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=25.3
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-+.+.. +.+.. -+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 3468888888764 33332 457788888 35778877773
No 207
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.20 E-value=31 Score=20.12 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=26.2
Q ss_pred cccccccccccCCCeeeEcCCCCCccC--HHHHHHHHhcCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFH--VPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH--~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..|+-|-+.+..++..... -+..|| .+| ..|-.|+.+|
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L 42 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCL 42 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBC
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcC
Confidence 3588888888764332222 467899 888 4688888777
No 208
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.86 E-value=38 Score=20.59 Aligned_cols=37 Identities=27% Similarity=0.516 Sum_probs=25.7
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+-|-+.+. ++.+.. -+..||.+| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCC
Confidence 47999998887 333332 567899988 45777777764
No 209
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=26.78 E-value=4 Score=24.95 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=25.8
Q ss_pred ccccccccccCCCeeeEc-CCCCCccCHHHHHHHH---h-----cCCCCccccc
Q 040159 100 TCAVCLGDFKEGEQVRVL-PECLHLFHVPCIDMWL---S-----SHSNCPLCRA 144 (176)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l-~~C~H~fH~~Ci~~wl---~-----~~~~CP~CR~ 144 (176)
.| ||......+.-|.-- +.|..=||..|+.--- . .+..||.||.
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 46 797765555433321 1377789999973211 0 1345999974
No 210
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.31 E-value=4.3 Score=25.70 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.1
Q ss_pred CCCCccCHHHHHHHHh
Q 040159 119 ECLHLFHVPCIDMWLS 134 (176)
Q Consensus 119 ~C~H~fH~~Ci~~wl~ 134 (176)
.|+|.|+..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 4999999999887754
No 211
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.01 E-value=34 Score=20.73 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=25.4
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
..|+-|-+.+... . +.. -+..||.+| ..|-.|+.+|
T Consensus 16 ~~C~~C~~~I~~~-~--v~a-~~~~~H~~C--------F~C~~C~~~L 51 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTY-RDQPWHREC--------LVCTGCQTPL 51 (80)
T ss_dssp CCCTTTCCCCCSC-C--EES-SSSEECTTT--------CBCSSSCCBC
T ss_pred CcCCCCCCEecCc-E--EEE-CCchhhhhh--------CCcccCCCcC
Confidence 4688888887643 2 233 577889888 4678888777
No 212
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.53 E-value=22 Score=21.08 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=7.9
Q ss_pred CCCccccccccCCC
Q 040159 137 SNCPLCRANANAAP 150 (176)
Q Consensus 137 ~~CP~CR~~~~~~~ 150 (176)
+.||.|+..+.+..
T Consensus 7 k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 7 KECPKCHVTIEKDG 20 (60)
T ss_dssp CCCTTTCCCCSSCC
T ss_pred eECcCCCCeeEeCC
Confidence 34666666665443
No 213
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.99 E-value=51 Score=21.66 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=20.6
Q ss_pred CcccccccccccC-CCeeeEcCCCCCccCHHHHHHHHhcC
Q 040159 98 EDTCAVCLGDFKE-GEQVRVLPECLHLFHVPCIDMWLSSH 136 (176)
Q Consensus 98 ~~~C~ICl~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl~~~ 136 (176)
-..|..|-..+.. +.... .. =+..|+..|...-+..+
T Consensus 30 CF~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHTSC
T ss_pred cCcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhCcc
Confidence 3467777776653 22221 21 36678888876655443
No 214
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.72 E-value=18 Score=30.86 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=29.9
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHh-----cCCCCcccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLS-----SHSNCPLCRAN 145 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~ 145 (176)
..| ||...+..+........|.-=||..|+.---. ..-.||.|+..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 356 99988754444444445898899999843221 23459999753
No 215
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.08 E-value=6.9 Score=24.15 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=10.4
Q ss_pred HhcCCCCccccccccC
Q 040159 133 LSSHSNCPLCRANANA 148 (176)
Q Consensus 133 l~~~~~CP~CR~~~~~ 148 (176)
+..--.||.|+.++.-
T Consensus 5 LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEY 20 (68)
T ss_dssp SSCCCBCSSSCCBCEE
T ss_pred HhhheECCCCCCcCeE
Confidence 3344568999887743
No 216
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.95 E-value=95 Score=19.42 Aligned_cols=21 Identities=0% Similarity=-0.192 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040159 19 IGLLGVIAGFMMVATYHCISL 39 (176)
Q Consensus 19 i~~i~il~~~~vl~~~~~i~~ 39 (176)
.++.+++++.+++++++-+..
T Consensus 16 gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 217
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.65 E-value=32 Score=20.96 Aligned_cols=38 Identities=18% Similarity=0.501 Sum_probs=26.1
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
...|+-|-..+.. ..+ .. -+..||..| ..|..|..+|.
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RIL--RA-MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCE--EE-TTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecc-eeE--EE-CCccccHHh--------cCcccCCCccC
Confidence 3468888888773 222 22 567899888 46888888773
No 218
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.31 E-value=41 Score=20.30 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=25.7
Q ss_pred cccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCcccccccc
Q 040159 99 DTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANAN 147 (176)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~ 147 (176)
..|+-|-+.+.. +.+.. -+..||.+| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSC
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCC
Confidence 468888888775 23322 457888888 46888888774
No 219
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.85 E-value=6.9 Score=24.16 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=9.0
Q ss_pred CCCCccccccccC
Q 040159 136 HSNCPLCRANANA 148 (176)
Q Consensus 136 ~~~CP~CR~~~~~ 148 (176)
--.||.|+.++.-
T Consensus 8 iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 8 ILVCPLCKGPLVF 20 (68)
T ss_dssp ECBCTTTCCBCEE
T ss_pred heECCCCCCcCeE
Confidence 3458999887743
No 220
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.54 E-value=8.3 Score=24.61 Aligned_cols=21 Identities=29% Similarity=0.711 Sum_probs=14.9
Q ss_pred eEcCCCCCccCHHHHHHHHhc
Q 040159 115 RVLPECLHLFHVPCIDMWLSS 135 (176)
Q Consensus 115 ~~l~~C~H~fH~~Ci~~wl~~ 135 (176)
..-+.|++.|+..|-..|-..
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~ 64 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQ 64 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTT
T ss_pred eEeCCCCCccccccCCchhhc
Confidence 344459999999988877333
No 221
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.17 E-value=82 Score=20.86 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=32.5
Q ss_pred ccccccccccC-CCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccccC
Q 040159 100 TCAVCLGDFKE-GEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANANA 148 (176)
Q Consensus 100 ~C~ICl~~~~~-~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~~~ 148 (176)
.|..|-..+.+ +.... .. =+..|+..|...-+..+..|-.|..++..
T Consensus 34 ~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 68888777752 22222 22 56789999988877665589999988853
No 222
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.03 E-value=48 Score=23.94 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=25.9
Q ss_pred CcccccccccccCCCeeeEcCCCCCccCHHHHHHHHhcCCCCccccccc
Q 040159 98 EDTCAVCLGDFKEGEQVRVLPECLHLFHVPCIDMWLSSHSNCPLCRANA 146 (176)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l~~C~H~fH~~Ci~~wl~~~~~CP~CR~~~ 146 (176)
...|+.|-+.+.+.+.+.. -+..||.+| ..|-.|+.+|
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L 152 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSL 152 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCC
Confidence 4568888888876655543 456788887 4566776666
No 223
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.03 E-value=7.3 Score=24.18 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=7.9
Q ss_pred CCCCcccccccc
Q 040159 136 HSNCPLCRANAN 147 (176)
Q Consensus 136 ~~~CP~CR~~~~ 147 (176)
--.||.|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (70)
T 2js4_A 8 ILVCPVCKGRLE 19 (70)
T ss_dssp CCBCTTTCCBEE
T ss_pred heECCCCCCcCE
Confidence 345888877664
Done!