Query 040160
Match_columns 459
No_of_seqs 212 out of 1213
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06060 misato Human Misato sh 100.0 2.1E-83 4.6E-88 672.4 24.5 371 2-459 1-394 (493)
2 KOG2530 Members of tubulin/Fts 100.0 3E-80 6.6E-85 618.2 16.8 381 1-427 1-383 (483)
3 COG5023 Tubulin [Cytoskeleton] 100.0 3.4E-71 7.5E-76 541.8 12.9 328 1-445 1-336 (443)
4 PLN00221 tubulin alpha chain; 100.0 1.4E-58 3.1E-63 484.1 19.5 325 1-445 1-338 (450)
5 PTZ00335 tubulin alpha chain; 100.0 1.6E-56 3.5E-61 468.3 19.0 326 1-445 1-338 (448)
6 cd02188 gamma_tubulin Gamma-tu 100.0 1.4E-56 3E-61 466.8 13.2 325 2-445 1-339 (431)
7 PLN00222 tubulin gamma chain; 100.0 8.2E-56 1.8E-60 463.4 17.6 325 1-445 2-345 (454)
8 PTZ00010 tubulin beta chain; P 100.0 6E-56 1.3E-60 464.4 15.2 324 1-444 1-335 (445)
9 PTZ00387 epsilon tubulin; Prov 100.0 2.3E-55 5E-60 460.4 14.6 318 1-442 1-360 (465)
10 cd02186 alpha_tubulin The tubu 100.0 1.2E-54 2.6E-59 453.6 17.7 323 2-444 1-336 (434)
11 cd02187 beta_tubulin The tubul 100.0 8.4E-55 1.8E-59 454.0 15.4 325 2-445 1-335 (425)
12 PLN00220 tubulin beta chain; P 100.0 4.1E-54 9E-59 451.4 17.3 326 1-444 1-335 (447)
13 KOG1374 Gamma tubulin [Cytoske 100.0 7E-54 1.5E-58 420.6 15.1 325 1-445 2-344 (448)
14 cd02189 delta_tubulin The tubu 100.0 4.2E-50 9.1E-55 420.7 18.3 314 4-423 2-346 (446)
15 cd02190 epsilon_tubulin The tu 100.0 3.7E-48 8.1E-53 398.3 14.8 282 2-445 1-292 (379)
16 KOG1376 Alpha tubulin [Cytoske 100.0 2.3E-46 5.1E-51 366.6 13.3 319 1-436 1-328 (407)
17 cd06059 Tubulin The tubulin su 100.0 7.1E-45 1.5E-49 375.5 15.8 284 3-445 1-295 (382)
18 PF14881 Tubulin_3: Tubulin do 100.0 5.6E-45 1.2E-49 337.5 12.5 171 155-338 6-180 (180)
19 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3.7E-41 8.1E-46 341.4 15.3 219 190-444 65-293 (328)
20 PF10644 Misat_Tub_SegII: Misa 100.0 1.5E-35 3.2E-40 255.6 8.0 115 2-122 1-115 (115)
21 PF00091 Tubulin: Tubulin/FtsZ 100.0 4E-35 8.6E-40 280.5 6.1 212 3-318 1-214 (216)
22 KOG1375 Beta tubulin [Cytoskel 99.9 1.2E-24 2.5E-29 215.0 6.5 182 190-421 61-245 (369)
23 smart00864 Tubulin Tubulin/Fts 99.9 1.3E-23 2.8E-28 197.5 6.1 127 192-339 64-191 (192)
24 cd02202 FtsZ_type2 FtsZ is a G 99.8 1E-19 2.2E-24 185.6 11.2 152 190-369 72-229 (349)
25 cd02191 FtsZ FtsZ is a GTPase 99.6 1.4E-15 3E-20 152.5 7.7 209 189-445 63-274 (303)
26 TIGR00065 ftsZ cell division p 99.5 1.4E-14 3.1E-19 147.7 6.4 148 189-368 80-228 (349)
27 cd02201 FtsZ_type1 FtsZ is a G 99.5 3.5E-14 7.6E-19 142.8 6.6 208 190-443 64-273 (304)
28 PRK13018 cell division protein 99.4 8.1E-13 1.8E-17 135.6 7.6 146 189-366 91-237 (378)
29 PRK09330 cell division protein 99.2 3E-11 6.4E-16 124.2 6.7 150 188-368 75-225 (384)
30 COG0206 FtsZ Cell division GTP 94.0 0.15 3.2E-06 52.1 7.1 141 203-369 82-223 (338)
31 PRK14484 phosphotransferase ma 74.8 2.5 5.4E-05 37.0 2.6 43 203-247 41-83 (124)
32 PF03610 EIIA-man: PTS system 74.2 3.7 7.9E-05 35.0 3.5 31 203-233 40-70 (116)
33 cd00006 PTS_IIA_man PTS_IIA, P 70.6 10 0.00023 32.6 5.5 31 203-233 40-70 (122)
34 TIGR00824 EIIA-man PTS system, 70.2 6.2 0.00014 33.9 4.0 36 203-238 41-77 (116)
35 cd02190 epsilon_tubulin The tu 66.5 4.1 8.9E-05 42.5 2.5 85 160-248 19-124 (379)
36 PF03953 Tubulin_C: Tubulin C- 60.4 0.81 1.8E-05 39.9 -3.5 67 367-445 1-76 (126)
37 PF13809 Tubulin_2: Tubulin li 55.3 29 0.00062 35.6 6.3 40 223-262 150-195 (345)
38 TIGR02364 dha_pts dihydroxyace 47.5 18 0.0004 31.6 3.0 30 203-233 41-71 (125)
39 PRK15088 PTS system mannose-sp 44.8 44 0.00096 34.1 5.7 36 203-238 42-78 (322)
40 PF12953 DUF3842: Domain of un 30.2 51 0.0011 29.1 2.9 25 234-258 10-35 (131)
41 COG2893 ManX Phosphotransferas 26.7 95 0.0021 27.8 4.1 41 203-243 42-83 (143)
42 PF11307 DUF3109: Protein of u 26.0 44 0.00095 31.2 1.9 20 436-455 102-124 (183)
43 PF09949 DUF2183: Uncharacteri 24.2 1.8E+02 0.0039 24.3 5.1 54 204-257 10-71 (100)
44 COG3958 Transketolase, C-termi 21.4 1.3E+02 0.0028 30.4 4.3 36 222-258 245-280 (312)
No 1
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=2.1e-83 Score=672.40 Aligned_cols=371 Identities=32% Similarity=0.534 Sum_probs=320.6
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCCCCcccc
Q 040160 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSS 81 (459)
Q Consensus 2 rEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~lg~l~~ 81 (459)
|||||||+||++|||||||||+||+++++.+++.. ..+|+||+||+|+|.+|++||+||+|+|||||++|+|++
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~------~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA------SELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc------ccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 89999999999999999999999999987766542 467999999999999999999999999999999999998
Q ss_pred cccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccccc
Q 040160 82 RGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFW 161 (459)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~W 161 (459)
.|.| .. ++|+++|++|
T Consensus 75 ~~~l-----------------------~~-----------------------------------------~~l~~~v~~W 90 (493)
T cd06060 75 EGSL-----------------------KV-----------------------------------------YNLEASVNVW 90 (493)
T ss_pred ccCc-----------------------CC-----------------------------------------cccccchhhh
Confidence 6643 00 1356788999
Q ss_pred cccccccccCCcccccCCccCC--CCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCCCcchHH
Q 040160 162 TDFSKVHYHPQSLYELGGLWMD--PQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAAD 239 (459)
Q Consensus 162 sDf~~~~~hPrS~~~l~~~~~~--~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGfSGl~s~ 239 (459)
|||+|++|||||+++|++|+|+ ..+|+.|+.|.++|++.+..|+++|+||+++|+||+|||||+++|++|||||+|++
T Consensus 91 SDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~sG~gs~ 170 (493)
T cd06060 91 SDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAK 170 (493)
T ss_pred hhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcccchHHH
Confidence 9999999999999999999995 45799999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCcc-----CcccccccccCC
Q 040160 240 LLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFL-----SESKASTFLRIE 314 (459)
Q Consensus 240 lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l-----~~~~~~~~l~~~ 314 (459)
++|+|+|||||+.++.|++.|...... ...+.++++||++|++++|.++||+++||..+.. ..+...+++.++
T Consensus 171 lLE~L~DEy~k~~i~~~~v~P~~~~~~--~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~~~~~l~~d 248 (493)
T cd06060 171 CLEHLQDEYGKASLLFPGLPPVIPPDA--SSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLNYD 248 (493)
T ss_pred HHHHHHHhcCccceeEEEeCCCccccc--ccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCCCCcccccC
Confidence 999999999999999999988642110 1235789999999999999999999999997532 123457789999
Q ss_pred CCCcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchHhhh
Q 040160 315 NEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLL 394 (459)
Q Consensus 315 ~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~~l~ 394 (459)
..+.||+|||+|++|+|+|+|||+++.+ .+|.+|+..|++.+|| |+++.++||+|+.++++++|+|.
T Consensus 249 ~~~~~htSAllA~aldT~TLp~Rl~~~~-----------~~m~~l~~~l~~~gRk--i~~~~~a~P~p~~~~~~l~d~L~ 315 (493)
T cd06060 249 AELPYHTSALLATALDTLTLPYRLKSSP-----------SSLSGLCDDLSFSGRK--VVAAGLALPFPMVGGQDLIDFLD 315 (493)
T ss_pred CCCchHHHHHHHHHHhhccccceeccCC-----------ccHHHHHHHhhhccch--hhhhccCCCCCCCCCCcHHHHHH
Confidence 9999999999999999999999998642 5799999999999999 99999999999999999999987
Q ss_pred cc----C-CCCCCCCcccccchhhhhheeecccccCCCCc--------cCHHHHHHH---HHHHhccCCcCCcceeeccc
Q 040160 395 GN----L-QPLTPEVSEDVEDLQAVESMIIHGALRSDGQR--------ASISEVKET---VNAIYGHAITRPMFCHLSVA 458 (459)
Q Consensus 395 ~~----l-~~ltp~~~~~~~~~~~~~s~~~rG~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 458 (459)
+. + ++|||++.. +..+++|+|++||++.+.-+| .++.-.-++ |.+.|++..+++.|||++|.
T Consensus 316 ~~~~~~~~~~l~p~~~~--~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~~~~~~~ 393 (493)
T cd06060 316 QSDGAVPWLQLTPGCQI--GTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSMSALSVL 393 (493)
T ss_pred hcCCCCCccccCCCCcc--CceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcchhheec
Confidence 43 2 689999876 577999999999998654432 222221122 56679999999999999986
Q ss_pred C
Q 040160 459 R 459 (459)
Q Consensus 459 ~ 459 (459)
+
T Consensus 394 ~ 394 (493)
T cd06060 394 P 394 (493)
T ss_pred C
Confidence 4
No 2
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=3e-80 Score=618.16 Aligned_cols=381 Identities=37% Similarity=0.576 Sum_probs=323.3
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccc-cccccccccCCCcceeecceeEeccCCCCCcc
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNM-DVLYRTGETQQGVLTYTPRLVSVGFQGSLGSM 79 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~-dvlfR~get~~g~~tytPR~l~vDl~~~lg~l 79 (459)
||||+|||||++||||||||||+||+.+++.+|.+.++ .++++ |||||+|++..|+.|||||+|+||+++.+|.+
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~----~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPP----GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCCh----hhcCcchhhhhccccccCceeeccceeEEecCcccccc
Confidence 99999999999999999999999999999998887654 34444 99999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccc
Q 040160 80 SSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVE 159 (459)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 159 (459)
+..|.+|.+.... +...|.|++++++++|.++++|+|++..++.+.. .. ...+++. +..++++.+|+
T Consensus 77 ~~~~~~~~~~~~~--~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~--------~~--~~~~i~~-e~~~~~~~sv~ 143 (483)
T KOG2530|consen 77 KYQGELYNDSHLG--NEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELP--------EL--NAEEIEY-ESDYSLLASVP 143 (483)
T ss_pred ccchhhccchhcc--cccccccccceeccccccCChHHhhhccccCccc--------cc--chhhhcc-ccccccccccc
Confidence 9999999865432 3468999999999999999999999998762111 01 1122222 33457889999
Q ss_pred cccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCCCcchHH
Q 040160 160 FWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAAD 239 (459)
Q Consensus 160 ~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGfSGl~s~ 239 (459)
+|+||+|.||||||+++|++++++.+.|+.|++|.++|++.++.++|.||||++|||||+|||||+++|+++||||||++
T Consensus 144 ~WsDFlr~~yHp~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~GfgG~as~ 223 (483)
T KOG2530|consen 144 SWSDFLRNHYHPRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFGGFASK 223 (483)
T ss_pred hHHHHHHhhcCccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCeeEEEecCC-CccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCc
Q 040160 240 LLENIADEYANTPVLLFSVRSP-SSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKP 318 (459)
Q Consensus 240 lle~L~DEYpk~~i~~~~v~p~-~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~ 318 (459)
+||+|+|||+++++++|+..|. .+...+.++-.+....+|.||++++|+++|++++||....... +.
T Consensus 224 ~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~~~------------~~ 291 (483)
T KOG2530|consen 224 LLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASGLG------------DL 291 (483)
T ss_pred HHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccccc------------cH
Confidence 9999999999999999999873 3333333444444558999999999999999999999653211 68
Q ss_pred chHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchHhhhccCC
Q 040160 319 YHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQ 398 (459)
Q Consensus 319 ~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~~l~~~l~ 398 (459)
|+++|++|.+++++|+|+|+.++ ++..+++.|++.+++ ++++..++|+|+.++++++++|+++..
T Consensus 292 ~~tsA~~a~~~ds~tlptr~~ss-------------S~~~~~d~ls~l~~~--~~~~g~alpf~~~~Gq~l~dtL~ss~~ 356 (483)
T KOG2530|consen 292 WETSAKLARAFDSITLPTRLISS-------------SNLRQRDTLSYLGSK--VITLGYALPFPLVTGQSLEDTLVSSGS 356 (483)
T ss_pred HHHHHHHHhhcccccccceecch-------------hHHHHHHHHHHHHHH--HHHhhhccCCCccccccchHHHHhccc
Confidence 99999999999999999999743 588899999998888 999999999999999999999998885
Q ss_pred CCCCCCcccccchhhhhheeecccccCCC
Q 040160 399 PLTPEVSEDVEDLQAVESMIIHGALRSDG 427 (459)
Q Consensus 399 ~ltp~~~~~~~~~~~~~s~~~rG~~~~~~ 427 (459)
-++|.-....... ++++++||+...++
T Consensus 357 ~v~~~q~s~~~n~--c~~~~~Rs~~~~~~ 383 (483)
T KOG2530|consen 357 AVLPTQLSHKPNN--CQSGVLRSIDDRGN 383 (483)
T ss_pred cccccccCCCCCc--ceEEEeeccccchh
Confidence 3333321111111 79999999987543
No 3
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=3.4e-71 Score=541.83 Aligned_cols=328 Identities=22% Similarity=0.343 Sum_probs=287.8
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcc
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSM 79 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l 79 (459)
||||||||+||||||||+.||.+++.|||+.++|......+......+|||+ |+.+| +|+||+|+|||+|+ ++.+
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~--e~~~~--k~vPRaI~vDLEP~vid~v 76 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFY--EASDG--KFVPRAILVDLEPGVIDQV 76 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceee--ecCCC--ccccceEEEecCcchHhhh
Confidence 9999999999999999999999999999999999854333345567899996 77888 99999999999999 7777
Q ss_pred cccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccc
Q 040160 80 SSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVE 159 (459)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 159 (459)
+. +| +++||+++ +++.|++++||
T Consensus 77 ~~---------------------------g~------y~~lf~Pe----n~i~gkegAgN-------------------- 99 (443)
T COG5023 77 RN---------------------------GP------YGSLFHPE----NIIFGKEGAGN-------------------- 99 (443)
T ss_pred cc---------------------------Cc------cccccChh----heeeccccccc--------------------
Confidence 65 45 78999999 99999999998
Q ss_pred cccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchH
Q 040160 160 FWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAA 238 (459)
Q Consensus 160 ~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s 238 (459)
+| ++|| |+.|+++ .|+++|+||+++|.||.|||||++||++||| ||+||
T Consensus 100 nw---A~Gh---------------------YtvG~e~------~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~Gs 149 (443)
T COG5023 100 NW---ARGH---------------------YTVGKEI------IDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGS 149 (443)
T ss_pred cc---cccc---------------------cchhHHH------HHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHH
Confidence 99 9998 9999999 9999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCc
Q 040160 239 DLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKP 318 (459)
Q Consensus 239 ~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~ 318 (459)
.|||.|++|||||.+.+|+|+|.+ +.++++++|||++|++++|.+++|+.|+++|++|++ +|.+.|+++.|++
T Consensus 150 lLLerl~~eypkK~~~tfSV~P~p------~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~d-i~~~~L~i~~P~y 222 (443)
T COG5023 150 LLLERLREEYPKKIKLTFSVFPAP------KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYD-ICRRNLRIQNPSY 222 (443)
T ss_pred HHHHHHHHhcchhheeEEEeccCC------ccCcceecccHHHHHHHHHHhcCCceEEechHHHHH-HHHHhcCCCCCCh
Confidence 999999999999999999999987 688999999999999999999999999999999999 9999999999999
Q ss_pred chHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchHhhhccC-
Q 040160 319 YHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNL- 397 (459)
Q Consensus 319 ~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~~l~~~l- 397 (459)
.|+|.|||++++++|.++||++. .+++|.+|+.+|+|+||.||+.... -|+....++.+......++
T Consensus 223 ~~lN~LIs~VmSsvTtslRfpG~----------ln~dl~~~~~nLVP~PrlHF~l~sy--tP~~s~~~~~~~~~sv~evt 290 (443)
T COG5023 223 DDLNQLISTVMSSVTTSLRFPGY----------LNVDLRSIQTNLVPYPRLHFPLVSY--TPFTSDGSAAHEKNSVSEVT 290 (443)
T ss_pred HHHHHHHHHHHHhhhheeecCcc----------ccchHHHHHhcCCCCCccccccccc--CcccchhhHHHhcccHHHHH
Confidence 99999999999999999999965 7899999999999999999987766 6888776655543222222
Q ss_pred -CCCCCCCccc----ccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 398 -QPLTPEVSED----VEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 398 -~~ltp~~~~~----~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
+.|-|...|. ..++|++...++||.... .||-++|-....+
T Consensus 291 ~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~v~~-------~dV~~a~~~v~~k 336 (443)
T COG5023 291 NQLFDPKNQMVSCDPRKGRYMAVCLLFRGDVDP-------RDVSRAVTRVQSK 336 (443)
T ss_pred HHHhCcccceeeecCCCCeeeehhHHHhcCCCH-------HHHHHHHHHHHhc
Confidence 2577775541 478899999999998764 4555555544433
No 4
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.4e-58 Score=484.06 Aligned_cols=325 Identities=18% Similarity=0.282 Sum_probs=271.5
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCcccc--ccCccccccccccccCCCcceeecceeEeccCCC-CC
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFR--NQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LG 77 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~--~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg 77 (459)
||||||||+||||||||..||++.+.||++.+++....... ......++||+ |+.+| +|+||+|+||++++ +.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~~i~ 76 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFS--ETGAG--KHVPRAVFVDLEPTVID 76 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhhee--ccCCc--ccccchhcCCCChhhhh
Confidence 99999999999999999999999999999988775321110 01235689996 55566 89999999999999 77
Q ss_pred cccccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccc
Q 040160 78 SMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNH 157 (459)
Q Consensus 78 ~l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (459)
.++. ++ ++.||+++ +++.+++++||
T Consensus 77 ~i~~---------------------------~~------~~~lf~~~----~~i~~~~gagN------------------ 101 (450)
T PLN00221 77 EVRT---------------------------GT------YRQLFHPE----QLISGKEDAAN------------------ 101 (450)
T ss_pred hhcc---------------------------Cc------cccccCcc----ceeccCCCccc------------------
Confidence 7754 12 35678777 88889999988
Q ss_pred cccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccc
Q 040160 158 VEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAV 236 (459)
Q Consensus 158 v~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl 236 (459)
+| ++|+ |+.|.++ .|+++|+||+++|+||+|||||++||++||| ||+
T Consensus 102 --nw---a~Gy---------------------~~~g~~~------~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGl 149 (450)
T PLN00221 102 --NF---ARGH---------------------YTIGKEI------VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGL 149 (450)
T ss_pred --cc---cccc---------------------cchhHHH------HHHHHHHHHHHHHhccCccceeEeeccCCCccchH
Confidence 99 9996 8889998 9999999999999999999999999999999 999
Q ss_pred hHHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCC
Q 040160 237 AADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENE 316 (459)
Q Consensus 237 ~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~ 316 (459)
|++++|+|+|||||+.+++++|+|+. ..+++++++||++|++++|.+++|++++++|++|++ +|.+.++++.+
T Consensus 150 gs~~le~l~d~y~~~~~~~~~v~P~~------~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~-~~~~~~~~~~p 222 (450)
T PLN00221 150 GSLLLERLSVDYGKKSKLGFTVYPSP------QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYD-ICRRSLDIERP 222 (450)
T ss_pred HHHHHHHHHHhcccccceeeEeeCCC------cCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHH-HHHhhcCCCCC
Confidence 99999999999999999999999986 456789999999999999999999999999999998 89999999999
Q ss_pred CcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHh
Q 040160 317 KPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQS 392 (459)
Q Consensus 317 ~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~ 392 (459)
++.++|.|||++|+++|.++||++. .+.+|++++.+|+|+||.||++... .|+....+... +..
T Consensus 223 ~~~dlN~lIa~~is~~T~s~RF~g~----------ln~dl~~l~~nLvP~P~lhfl~~s~--~P~~~~~~~~~~~~s~~~ 290 (450)
T PLN00221 223 TYTNLNRLISQVISSLTASLRFDGA----------LNVDITEFQTNLVPYPRIHFMLSSY--APVISAEKAYHEQLSVAE 290 (450)
T ss_pred CHHHHHHHHhhhccccccccccccc----------ccCCHHHHHHhcCCCCCceeecccc--CccccccccccccCCHHH
Confidence 9999999999999999999999854 5789999999999999999998776 56543322221 222
Q ss_pred hhccCCCCCCC-----CcccccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 393 LLGNLQPLTPE-----VSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 393 l~~~l~~ltp~-----~~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
+.+.+ |.|. +.+ ..++|++.++++||. .+..+|.+++......
T Consensus 291 l~~~l--~~~~~~l~~~~~-~~~kyla~~~~~RG~-------~~~~~v~~~~~~~~~~ 338 (450)
T PLN00221 291 ITNSA--FEPASMMAKCDP-RHGKYMACCLMYRGD-------VVPKDVNAAVATIKTK 338 (450)
T ss_pred HHHHH--hcccceeeecCC-CcchHHHHHHHHcCC-------CCHHHHHHHHHHHHhc
Confidence 33443 3333 332 368899999999994 4567888888766444
No 5
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.6e-56 Score=468.33 Aligned_cols=326 Identities=18% Similarity=0.277 Sum_probs=271.9
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCcccc--ccCccccccccccccCCCcceeecceeEeccCCC-CC
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFR--NQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LG 77 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~--~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg 77 (459)
||||||||+||||||||..||++.+.||++.+++..+.... ......++||+ |+.+| +|+||+|+||++++ +.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~~i~ 76 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFS--ETGAG--KHVPRCVFLDLEPTVID 76 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeE--EcCCC--ccccccccccCCcchhh
Confidence 99999999999999999999999999999988775321100 01235679996 55566 89999999999999 77
Q ss_pred cccccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccc
Q 040160 78 SMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNH 157 (459)
Q Consensus 78 ~l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (459)
.++. ++ ++.||+++ +++.+++++||
T Consensus 77 ~i~~---------------------------~~------~~~l~~~~----~~i~~~~gagn------------------ 101 (448)
T PTZ00335 77 EVRT---------------------------GT------YRQLFHPE----QLISGKEDAAN------------------ 101 (448)
T ss_pred hccc---------------------------Cc------cccccCch----heeecCCCCCC------------------
Confidence 7754 12 45577777 88889999888
Q ss_pred cccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccc
Q 040160 158 VEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAV 236 (459)
Q Consensus 158 v~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl 236 (459)
+| ++|+ |+.|.++ .|+++|+||+++|+||+||||+++|+++||| ||+
T Consensus 102 --nw---a~Gy---------------------~~~G~~~------~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGl 149 (448)
T PTZ00335 102 --NF---ARGH---------------------YTIGKEI------VDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGL 149 (448)
T ss_pred --cc---cccc---------------------cchhhhH------hHHHHHHHHHhHHhccCccceeEeeccCCCccchH
Confidence 99 9996 8889998 9999999999999999999999999999999 999
Q ss_pred hHHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCC
Q 040160 237 AADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENE 316 (459)
Q Consensus 237 ~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~ 316 (459)
|+.++|.|+||||++++++++|+|+. ..++.++++||++|++++|.++||++++++|++|.+ +|.+.+.++.+
T Consensus 150 gs~l~e~l~d~yp~~~~~~~~v~P~~------~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~-i~~~~~~~~~~ 222 (448)
T PTZ00335 150 GSLLLERLSVDYGKKSKLGFTIYPSP------QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYD-ICRRNLDIERP 222 (448)
T ss_pred HHHHHHHHHHhccccceeeEEecCCC------CCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHH-HHHHhcCCCCC
Confidence 99999999999999999999999986 456789999999999999999999999999999998 88888889999
Q ss_pred CcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHh
Q 040160 317 KPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQS 392 (459)
Q Consensus 317 ~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~ 392 (459)
++.++|.+||++|.++|.++||++. .+.+|.+++.+|+|+||.||+.... .|+........ +..
T Consensus 223 ~~~~~N~~Ia~~is~~t~~~rf~g~----------~~~dl~~l~~nLvP~P~l~fl~~s~--~P~~~~~~~~~~~~s~~~ 290 (448)
T PTZ00335 223 TYTNLNRLIAQVISSLTASLRFDGA----------LNVDLTEFQTNLVPYPRIHFMLSSY--APIISAEKAYHEQLSVAE 290 (448)
T ss_pred CHHHHHHHHHhhhcccccccccccc----------cCCCHHHHhccccCCCCceeccccc--CcccccccccccCCCHHH
Confidence 9999999999999999999999854 5689999999999999999998776 56644332222 233
Q ss_pred hhccCCCCCCCCcc----cccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 393 LLGNLQPLTPEVSE----DVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 393 l~~~l~~ltp~~~~----~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
+.+.+ |.|...+ ...++|++.++++||. .+..++.+++....+.
T Consensus 291 l~~~l--~~~~n~~~~~~~~~~~~ls~~~~~RG~-------~~~~~i~~~~~~~~~~ 338 (448)
T PTZ00335 291 ITNSA--FEPANMMAKCDPRHGKYMACCLMYRGD-------VVPKDVNAAIATIKTK 338 (448)
T ss_pred HHHHh--cCccceeEecCCCccchHHHHHHHcCC-------CCHHHHHHHHHHHHhh
Confidence 44444 3443221 1368899999999993 5677888888766554
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.4e-56 Score=466.80 Aligned_cols=325 Identities=20% Similarity=0.300 Sum_probs=264.1
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCccc
Q 040160 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSMS 80 (459)
Q Consensus 2 rEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l~ 80 (459)
|||||||+||||||||..||++.+.||++.+++..+..........++||. |+.+| +|+||+|+||++++ +..+.
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~Ep~vi~~i~ 76 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFY--QADDE--HYVPRAILIDLEPRVINSIQ 76 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEE--ECCCC--ccCCcceeccCCcchhhhhh
Confidence 799999999999999999999999999998776432110011235789995 56666 99999999999999 77665
Q ss_pred ccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCC--CCCCCccchhcchhhhhhccccc
Q 040160 81 SRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTS--SGKSDSQREIQDKDIVELLDNHV 158 (459)
Q Consensus 81 ~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~v 158 (459)
. ++ .+.||+++ +++.+++ ++||
T Consensus 77 ~---------------------------~~------~~~lf~~~----~~~~~~~~~gagn------------------- 100 (431)
T cd02188 77 N---------------------------SE------YRNLYNPE----NIFLSKHGGGAGN------------------- 100 (431)
T ss_pred c---------------------------Cc------cccccCcc----ceEeeccCCCccc-------------------
Confidence 4 22 35577777 7887876 6777
Q ss_pred ccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccch
Q 040160 159 EFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVA 237 (459)
Q Consensus 159 ~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~ 237 (459)
+| ++|+ ..|+++ .|+++|+||+++|+||++|||+++++++||| ||+|
T Consensus 101 -nw---a~Gy----------------------~~g~~~------~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~g 148 (431)
T cd02188 101 -NW---ASGY----------------------SQGEEV------QEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMG 148 (431)
T ss_pred -cH---HHHH----------------------HHHHHH------HHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHH
Confidence 89 8884 468888 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCC
Q 040160 238 ADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEK 317 (459)
Q Consensus 238 s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~ 317 (459)
+.++|+|+|+||++.+++++|+|+.. ...+.++++||++|++++|.+++|++++++|++|.+ +|.+.++++.++
T Consensus 149 s~l~e~L~d~y~~~~~~~~~V~P~~~-----~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~-i~~~~l~~~~~~ 222 (431)
T cd02188 149 SYLLERLNDRYPKKLIQTYSVFPNQD-----ESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNR-IATDRLHIQNPT 222 (431)
T ss_pred HHHHHHHHhHcCcceeeeEEecCCCc-----cCCCccceecHHHHHHHHHHHhCCeeeecchHHHHH-HHHHhcCCCCCC
Confidence 99999999999999999999999762 224778999999999999999999999999999998 899999999999
Q ss_pred cchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCC-CCCc----hHh
Q 040160 318 PYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALN-GKQH----EQS 392 (459)
Q Consensus 318 ~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~-~~~~----~~~ 392 (459)
+.++|.+||++|+++|+|+||++. .+++|.+++++|+|+||.||+.... .|+.... +... +..
T Consensus 223 ~~~~N~~ia~~ls~~t~~~Rf~g~----------ln~dl~~i~tnLvP~P~lhfl~~s~--~P~~~~~~~~~~~~~s~~~ 290 (431)
T cd02188 223 FDQINSLVSTVMSASTTTLRYPGY----------MNNDLISLIASLIPTPRLHFLMTSY--TPLTSDQIAASVRKTTVLD 290 (431)
T ss_pred HHHHHHHHhccCCCcccceecCCc----------cCCCHHHHHHhcCCCCCceeecccc--CccccchhhcceecCCHHH
Confidence 999999999999999999999854 5789999999999999999998776 5664433 1222 233
Q ss_pred hhccCCCCCCCCcc---c--ccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 393 LLGNLQPLTPEVSE---D--VEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 393 l~~~l~~ltp~~~~---~--~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
+.+.| +.|...+ + ..++|++.++++||. ....++.+++.+....
T Consensus 291 l~~~l--~~~~n~m~~~~~~~~~k~la~~~~~RG~-------~~~~~~~~~~~~lk~~ 339 (431)
T cd02188 291 VMRRL--LQPKNIMVSTATRKNGCYISILNIIQGE-------VDPTQVHKSLQRIRER 339 (431)
T ss_pred HHHHH--hccccceeecCCCccchhHHHHHHHcCC-------CCHHHHHHHHHHHHhh
Confidence 44444 3333221 1 368999999999994 3556666666554433
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=8.2e-56 Score=463.38 Aligned_cols=325 Identities=19% Similarity=0.278 Sum_probs=263.9
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcc
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSM 79 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l 79 (459)
||||||||+||||||||..||++.+.||++.+++.............++||+ |+..| +|+||+|+||++++ +..+
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~vi~~i 77 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFY--QADDE--HYIPRALLIDLEPRVINGI 77 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeE--EcCCC--cccceeeecCCCcchhhhh
Confidence 6999999999999999999999999999997776432110011235789996 45556 89999999999999 7777
Q ss_pred cccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCC--CCCCCccchhcchhhhhhcccc
Q 040160 80 SSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTS--SGKSDSQREIQDKDIVELLDNH 157 (459)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 157 (459)
+. .+ ++.||+++ +++.+++ ++||
T Consensus 78 ~~---------------------------~~------~~~lf~~~----~~~~~~~~~gagn------------------ 102 (454)
T PLN00222 78 QN---------------------------SE------YRNLYNHE----NIFVSDHGGGAGN------------------ 102 (454)
T ss_pred cc---------------------------Cc------cccccCcc----ceeecccCCCccc------------------
Confidence 43 12 45577777 7888886 4666
Q ss_pred cccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccc
Q 040160 158 VEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAV 236 (459)
Q Consensus 158 v~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl 236 (459)
+| ++|+ ..|+++ .|+++|+||+++|.||++|||+++|+++||| ||+
T Consensus 103 --n~---a~Gy----------------------~~g~~~------~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGl 149 (454)
T PLN00222 103 --NW---ASGY----------------------HQGEQV------EEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGM 149 (454)
T ss_pred --ch---HHhH----------------------HHHHHH------HHHHHHHHHHHHHhCCCccceEEeecCCCCccchH
Confidence 89 8984 468888 9999999999999999999999999999999 999
Q ss_pred hHHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCC
Q 040160 237 AADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENE 316 (459)
Q Consensus 237 ~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~ 316 (459)
|+.++|.|+|+||++.+++++|+|+.. ...+.++++||++|++++|.+++|++++++|++|++ +|.+.++++.+
T Consensus 150 gs~lle~L~d~y~~~~~~~~~v~P~~~-----~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~-ic~~~l~i~~p 223 (454)
T PLN00222 150 GSYLLEALNDRYSKKLVQTYSVFPNQM-----ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNR-IAVDRLHLENP 223 (454)
T ss_pred HHHHHHHHHhhcCCcceeeEEecCCCc-----ccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHH-HHHHhcCCCCC
Confidence 999999999999999999999999752 245678999999999999999999999999999998 89999999999
Q ss_pred CcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCC-C-----Cch
Q 040160 317 KPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNG-K-----QHE 390 (459)
Q Consensus 317 ~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~-~-----~~~ 390 (459)
++.++|.|||++|+++|.++||++. .+.+|.+++++|+|+||.||+.... .|+....+ . ++.
T Consensus 224 ~~~dlN~lIA~~ls~~T~s~Rfpg~----------ln~dl~~l~~nLvP~P~lhfl~~s~--~P~~~~~~~~~~~~~s~~ 291 (454)
T PLN00222 224 TFAQTNSLVSTVMSASTTTLRYPGY----------MNNDLVGLLASLIPTPRCHFLMTGY--TPLTVERQANVIRKTTVL 291 (454)
T ss_pred CHHHHHHHhccccCCcccccCCCCc----------cCCCHHHHhhhcCCCCCceeecccc--ccccccccccceeeCCHH
Confidence 9999999999999999999999954 6789999999999999999998777 56543211 1 112
Q ss_pred HhhhccCCCCCCCCcc-----c----ccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 391 QSLLGNLQPLTPEVSE-----D----VEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 391 ~~l~~~l~~ltp~~~~-----~----~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
+ +.+.| |.|...+ . +.++|++.++++||. .+..+|.+++.+....
T Consensus 292 ~-~~~~l--~~~~n~~~~~~~~~~~~~~~k~la~~~~~RG~-------~~~~~v~~~~~~~~~~ 345 (454)
T PLN00222 292 D-VMRRL--LQTKNIMVSSYARTKEASQAKYISILNIIQGE-------VDPTQVHKSLQRIRER 345 (454)
T ss_pred H-HHHHH--hcccCceeecCCccccccccchHHHHHHHhCC-------CCHHHHHHHHHHHhhh
Confidence 2 22333 2232221 1 137899999999993 5677888887655543
No 8
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=6e-56 Score=464.41 Aligned_cols=324 Identities=22% Similarity=0.313 Sum_probs=269.2
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcc
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSM 79 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l 79 (459)
||||||||+||||||||..||++.+.+|++.+++..+........+.+++|+ |+..| +|+||+|+||++++ +..+
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~--e~~~~--~~~pRav~iD~e~~vi~~i 76 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYN--EATGG--RYVPRAVLMDLEPGTMDSV 76 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeec--ccCCC--ceEEeeeeccCChhhhhhh
Confidence 9999999999999999999999999999998776432110011135678996 55566 89999999999999 7666
Q ss_pred cccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccc
Q 040160 80 SSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVE 159 (459)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 159 (459)
+. .+ .+.||+++ +++.|++++||
T Consensus 77 ~~---------------------------~~------~~~lf~~~----~~~~~~~gagN-------------------- 99 (445)
T PTZ00010 77 RA---------------------------GP------YGQLFRPD----NFIFGQSGAGN-------------------- 99 (445)
T ss_pred cc---------------------------cc------hhhhcCcc----ceeecccCCcc--------------------
Confidence 43 12 44577777 88889989988
Q ss_pred cccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchH
Q 040160 160 FWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAA 238 (459)
Q Consensus 160 ~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s 238 (459)
+| ++|+ |+.|.++ .|+++|+||+++|+||++|||+++++++||| ||+|+
T Consensus 100 nw---a~G~---------------------~~~g~~~------~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs 149 (445)
T PTZ00010 100 NW---AKGH---------------------YTEGAEL------IDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGT 149 (445)
T ss_pred cc---ccch---------------------hhhhHHH------HHHHHHHHhhhhhhccCccceEEEeccCCCccccHHH
Confidence 99 9997 8889998 9999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCc
Q 040160 239 DLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKP 318 (459)
Q Consensus 239 ~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~ 318 (459)
+++|.|+|||||+.+++++|+|+. ..++.++++||++|++++|.+++|.+++++|++|++ +|.+.++++.+++
T Consensus 150 ~l~e~L~dey~~~~~~~~~v~P~~------~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~-i~~~~l~~~~p~~ 222 (445)
T PTZ00010 150 LLISKLREEYPDRIMMTFSVFPSP------KVSDTVVEPYNATLSVHQLVENADESMCIDNEALYD-ICFRTLKLTTPTY 222 (445)
T ss_pred HHHHHHHhhCCccceeeeEecCCc------ccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHH-HHHHhccCCCCCH
Confidence 999999999999999999999986 456789999999999999999999999999999998 8999999999999
Q ss_pred chHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCch----Hhhh
Q 040160 319 YHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHE----QSLL 394 (459)
Q Consensus 319 ~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~----~~l~ 394 (459)
.|+|.|||++|+++|.++||++. .+.+|.+++++|+|+||.||+.... .|+....+.... ..+.
T Consensus 223 ~~lN~lIaq~is~~t~~~Rfpg~----------ln~dl~~l~tnLvP~P~l~fl~~s~--~P~~~~~~~~~~~~s~~~l~ 290 (445)
T PTZ00010 223 GDLNHLVSAVMSGVTCCLRFPGQ----------LNSDLRKLAVNLVPFPRLHFFMMGF--APLTSRGSQQYRGLSVPELT 290 (445)
T ss_pred HHHHHHHHhhccccccceecCCc----------ccccHHHHHHHHhcCCCceeeeccc--CccccccccccccCCHHHHH
Confidence 99999999999999999999954 6789999999999999999988766 566543322221 2233
Q ss_pred ccCCCCCCCC-----cccccchhhhhheeecccccCCCCccCHHHHHHHHHHHhc
Q 040160 395 GNLQPLTPEV-----SEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYG 444 (459)
Q Consensus 395 ~~l~~ltp~~-----~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~ 444 (459)
+.| |.|.. ++ ..++|++.++++||.. +..++.+++.....
T Consensus 291 ~~l--~~~~n~~~~~~~-~~~k~la~~~~~RG~~-------~~~~~~~~~~~~~~ 335 (445)
T PTZ00010 291 QQM--FDAKNMMCAADP-RHGRYLTASALFRGRM-------STKEVDEQMLNVQN 335 (445)
T ss_pred HhH--hcccceEeecCC-CcchhHHHHHHHcCCC-------CHHHHHHHHHHHHh
Confidence 333 44443 22 2678999999999953 55677777765443
No 9
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=2.3e-55 Score=460.40 Aligned_cols=318 Identities=21% Similarity=0.300 Sum_probs=259.3
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcC-CCCCCCCCccccccCcccccccccc-c--cCCCcceeecceeEeccCCC-
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLG-LASDPNNDPVFRNQCLNMDVLYRTG-E--TQQGVLTYTPRLVSVGFQGS- 75 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~-~~~d~~~~~~~~~~~~~~dvlfR~g-e--t~~g~~tytPR~l~vDl~~~- 75 (459)
||||||||+||||||||..||++.+.||+ +.+++.. +..+++||++. + +..|..+|+||+|+||++++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999998 5655542 23578999732 2 23342359999999999999
Q ss_pred CCcccccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcc
Q 040160 76 LGSMSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLD 155 (459)
Q Consensus 76 lg~l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (459)
+..+.. .+ ++.+|+++ +++.+++|+||
T Consensus 74 i~~i~~---------------------------~~------~~~~f~~~----~~i~~~~GaGN---------------- 100 (465)
T PTZ00387 74 LNQILK---------------------------SP------LGDLFDEN----FFVSDVSGAGN---------------- 100 (465)
T ss_pred HHHhhc---------------------------CC------cccccCcc----cccccCCCCCC----------------
Confidence 777653 22 45678777 89999999998
Q ss_pred cccccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-C
Q 040160 156 NHVEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-S 234 (459)
Q Consensus 156 ~~v~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-S 234 (459)
+| ++|+ |..|.+. .|+++|+||+++|+||+||||+++++++||| |
T Consensus 101 ----nw---a~G~---------------------~~~g~~~------~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGS 146 (465)
T PTZ00387 101 ----NW---AVGH---------------------MEYGDKY------IDSISESVRRQVEQCDSLQSFFLMHSLGGGTGS 146 (465)
T ss_pred ----Cc---CCCc---------------------ccccHHH------HHHHHHHHHHHHHhccCcceEEEEeecCCCcch
Confidence 89 9996 8889888 9999999999999999999999999999999 9
Q ss_pred cchHHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCC
Q 040160 235 AVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIE 314 (459)
Q Consensus 235 Gl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~ 314 (459)
|+|+.++|.|+||||++.+++++|+|+. ..+.++++||++|++++|.+++|+++|++|++|.+ +|.+.+.++
T Consensus 147 Glgs~lle~l~d~y~~~~~~~~~V~P~~-------~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~-i~~~~~~~~ 218 (465)
T PTZ00387 147 GLGTRILGMLEDEFPHVFRFCPVVFPSA-------VDDVITSPYNSFFALRELIEHADCVLPLDNDALAN-IADSALSRK 218 (465)
T ss_pred hHHHHHHHHHHHhcccCceeeeEecCCC-------CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHH-HHHhhcCcc
Confidence 9999999999999999999999999964 45678999999999999999999999999999998 787776665
Q ss_pred C---------------------------CCcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCC
Q 040160 315 N---------------------------EKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQA 367 (459)
Q Consensus 315 ~---------------------------~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~ 367 (459)
. +.+.++|.|||++|.++|.++||++. .++++.+++++|+|+|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~----------~n~dl~~i~~nLvP~P 288 (465)
T PTZ00387 219 KKKLAKGNIKRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGS----------LNVDINEITTNLVPYP 288 (465)
T ss_pred ccccccccccccccccccccccccccccccHHHHHHHHHhhhccccceeecCCc----------cCCCHHHHHhhcCCCC
Confidence 3 77889999999999999999999954 6799999999999999
Q ss_pred chhhhhhhcccccCCCCCCCCc----hHhhhccCCCCCCC-----CcccccchhhhhheeecccccCCCCccCHHHHHHH
Q 040160 368 RQNTVVILDAAMPAPALNGKQH----EQSLLGNLQPLTPE-----VSEDVEDLQAVESMIIHGALRSDGQRASISEVKET 438 (459)
Q Consensus 368 r~n~~~~~~~~~P~~~~~~~~~----~~~l~~~l~~ltp~-----~~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~ 438 (459)
|.||+.... .|+....+... ++.+.+.| |.|. +.+ ..++|++.++++||... ..+|.++
T Consensus 289 ~lhFl~~s~--~P~~~~~~~~~~~~s~~~l~~~l--~~~~~~m~~~~~-~~~k~la~~~~~RG~~~-------~~~v~~~ 356 (465)
T PTZ00387 289 RLHFLTSSI--APLVSLKDVAVGPRRLDQMFKDC--LDPDHQMVAATP-EAGKYLATALIVRGPQN-------VSDVTRN 356 (465)
T ss_pred Cceeecccc--CcccchhhcccccCCHHHHHHHH--hcccCeeeecCC-CcchHHHHHHHHcCCCC-------hHHHHHH
Confidence 999997766 46643322221 23333333 3332 222 36889999999999643 4456666
Q ss_pred HHHH
Q 040160 439 VNAI 442 (459)
Q Consensus 439 ~~~~ 442 (459)
+.+.
T Consensus 357 ~~~l 360 (465)
T PTZ00387 357 ILRL 360 (465)
T ss_pred HHHH
Confidence 5543
No 10
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.2e-54 Score=453.61 Aligned_cols=323 Identities=19% Similarity=0.287 Sum_probs=268.1
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCcccc--ccCccccccccccccCCCcceeecceeEeccCCC-CCc
Q 040160 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFR--NQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGS 78 (459)
Q Consensus 2 rEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~--~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~ 78 (459)
|||||||+||||||||..||++.+.||++++++....... ......++||+ |+.+| +|+||+|+||+++. +..
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~--e~~~~--~~~pRav~iD~e~~~i~~ 76 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFS--ETGSG--KHVPRAVFIDLEPTVIDE 76 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEE--ECCCC--cCcccccccCCcHHHHHh
Confidence 7999999999999999999999999999987764322110 01235789996 55566 89999999999998 777
Q ss_pred ccccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhccccc
Q 040160 79 MSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHV 158 (459)
Q Consensus 79 l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v 158 (459)
+.. ++ .+.|++++ +.+.|++++||
T Consensus 77 i~~---------------------------~~------~~~l~~~~----~~~~~~~g~gn------------------- 100 (434)
T cd02186 77 VRT---------------------------GT------YRQLFHPE----QLISGKEDAAN------------------- 100 (434)
T ss_pred hcc---------------------------Cc------cccccCcc----ceeecCCCCCc-------------------
Confidence 654 11 34577777 78888888888
Q ss_pred ccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccch
Q 040160 159 EFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVA 237 (459)
Q Consensus 159 ~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~ 237 (459)
+| ++|+ |..|.++ .|+++|+||+++|+||++|||+++|+++||| ||+|
T Consensus 101 -nw---a~Gy---------------------~~~G~~~------~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlg 149 (434)
T cd02186 101 -NF---ARGH---------------------YTIGKEI------IDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFG 149 (434)
T ss_pred -cc---cccc---------------------chhHHHH------HHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHH
Confidence 89 9996 8889998 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCC
Q 040160 238 ADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEK 317 (459)
Q Consensus 238 s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~ 317 (459)
+.++|+|+||||++++++++|+|+. ...+.++++||++|++++|.+++|++++++|++|.+ +|.+.++++.++
T Consensus 150 s~l~e~l~d~y~~~~~~~~~v~P~~------~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~-~~~~~~~~~~~~ 222 (434)
T cd02186 150 SLLLERLSVDYGKKSKLEFTVYPSP------QVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYD-ICRRNLDIERPT 222 (434)
T ss_pred HHHHHHHHHhcCccceeeEEEeCCC------CCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHH-HHHhhcCCCCCC
Confidence 9999999999999999999999986 455789999999999999999999999999999998 888889999999
Q ss_pred cchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHhh
Q 040160 318 PYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQSL 393 (459)
Q Consensus 318 ~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~l 393 (459)
+.++|++||++|+++|.++||++. .+++|.+++.+|+|+||.||+.... .|+........ +..|
T Consensus 223 ~~~lN~iIa~~l~~~t~~~rf~g~----------~~~~l~~l~~nLvP~P~l~fl~~s~--~P~~~~~~~~~~~~s~~~l 290 (434)
T cd02186 223 YTNLNRLIAQVVSSITASLRFDGA----------LNVDLNEFQTNLVPYPRIHFPLVSY--APIISAEKAYHEQLSVAEI 290 (434)
T ss_pred HHHHHHHHHHHhhccccceecCCc----------cCCCHHHHHhhccccccceeecccc--CcccchhhccccCCCHHHH
Confidence 999999999999999999999854 5689999999999999999988766 56644322221 3344
Q ss_pred hccCCCCCCC-----CcccccchhhhhheeecccccCCCCccCHHHHHHHHHHHhc
Q 040160 394 LGNLQPLTPE-----VSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYG 444 (459)
Q Consensus 394 ~~~l~~ltp~-----~~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~ 444 (459)
.+.| |.|. |.. ..++|++.++++||.. +..+|.+++.....
T Consensus 291 ~~~l--~~~~~~m~~~~~-~~~~~la~~~~~RG~~-------~~~~v~~~~~~~~~ 336 (434)
T cd02186 291 TNAC--FEPANQMVKCDP-RHGKYMACCLLYRGDV-------VPKDVNAAVATIKT 336 (434)
T ss_pred HHHH--hCccceeeecCC-cchhHHHHHHHHcCCC-------CHHHHHHHHHHHHH
Confidence 4555 3333 222 3688999999999953 46777787766543
No 11
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=8.4e-55 Score=453.95 Aligned_cols=325 Identities=22% Similarity=0.299 Sum_probs=267.3
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCccc
Q 040160 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSMS 80 (459)
Q Consensus 2 rEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l~ 80 (459)
|||||||+||||||||.+||++.+.+|++.+++..+..........++||+ |+.+| +|+||+|+||++++ +..++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~~i~~i~ 76 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFN--EASGG--KYVPRAILVDLEPGTMDSVR 76 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEE--ecCCC--ceeeeeeeccCChhhhhhhh
Confidence 799999999999999999999999999997776432111011124678997 45556 89999999999998 77664
Q ss_pred ccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhccccccc
Q 040160 81 SRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEF 160 (459)
Q Consensus 81 ~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 160 (459)
. .+ .+.|++++ +++.|++++|| +
T Consensus 77 ~---------------------------~~------~~~l~~~~----~~~~~~~gagn--------------------n 99 (425)
T cd02187 77 S---------------------------GP------FGQLFRPD----NFVFGQSGAGN--------------------N 99 (425)
T ss_pred c---------------------------Cc------ccceecCc----ceeeccCCCCC--------------------c
Confidence 3 12 34466666 78888888888 9
Q ss_pred ccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHH
Q 040160 161 WTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAAD 239 (459)
Q Consensus 161 WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~ 239 (459)
| ++|+ |..|.++ .|+++|+||+++|+||++|||+++++++||| ||+|+.
T Consensus 100 w---a~G~---------------------~~~G~~~------~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~ 149 (425)
T cd02187 100 W---AKGH---------------------YTEGAEL------IDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL 149 (425)
T ss_pred c---Cccc---------------------hhhcHHH------HHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHH
Confidence 9 9996 7889998 8999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcc
Q 040160 240 LLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPY 319 (459)
Q Consensus 240 lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~ 319 (459)
++|+|+||||++.+++++|+|+. ...+.++++||++|+|++|.+++|++++++|++|.+ +|...++++.+++.
T Consensus 150 l~e~l~d~y~~~~~~~~~V~P~~------~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~-i~~~~~~~~~~~~~ 222 (425)
T cd02187 150 LISKIREEYPDRIMATFSVFPSP------KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYD-ICFRTLKLTNPTYG 222 (425)
T ss_pred HHHHHHHhcCCcceEEEEEecCC------CcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHH-HHHHhcCCCCCCHH
Confidence 99999999999999999999986 445789999999999999999999999999999998 88888889999999
Q ss_pred hHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHhhhc
Q 040160 320 HCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQSLLG 395 (459)
Q Consensus 320 ~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~l~~ 395 (459)
++|.+||++|+++|.++||++. .+.+|.+++++|+|+|+.||+.... .|+........ +..+.+
T Consensus 223 ~~N~~ia~~is~~t~s~Rfpg~----------~n~dl~~l~~nLvP~P~~~fl~~s~--~P~~~~~~~~~~~~s~~~l~~ 290 (425)
T cd02187 223 DLNHLVSAVMSGITTCLRFPGQ----------LNSDLRKLAVNMVPFPRLHFFMPGF--APLTSRGSQQYRALTVPELTQ 290 (425)
T ss_pred HHHHHHhccccccceeeecCCc----------cccCHHHHHHhcCCCCCceeccccc--CccccccccccccCCHHHHHH
Confidence 9999999999999999999954 5789999999999999999988766 56654322221 223444
Q ss_pred cCCCCCCCCcc----cccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 396 NLQPLTPEVSE----DVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 396 ~l~~ltp~~~~----~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
.| |.|...+ ...++|++.++++||. .+..++.+++.+..+.
T Consensus 291 ~l--~~~~~~~~~~~~~~~~~la~~~~~RG~-------~~~~~~~~~~~~~~~~ 335 (425)
T cd02187 291 QM--FDAKNMMAACDPRHGRYLTAAAIFRGR-------VSMKEVDEQMLNVQNK 335 (425)
T ss_pred HH--hCccCeeeccCCCcchHHHHHHHHcCC-------CCHHHHHHHHHHHHHh
Confidence 44 4444322 1358899999999994 4667777777766544
No 12
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=4.1e-54 Score=451.37 Aligned_cols=326 Identities=21% Similarity=0.292 Sum_probs=266.7
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcc
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSM 79 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l 79 (459)
||||||||+||||||||..||++...+|++.+++..+..........+++|+ ++.+| +|+||+|+||++++ +..+
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~--e~~~~--~~~pRav~iD~e~~~i~~i 76 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYN--EASGG--RYVPRAVLMDLEPGTMDSV 76 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceec--cCCCC--cccceeEecCCcHHHHHHH
Confidence 9999999999999999999999999999998766432211111124678996 55566 89999999999998 6655
Q ss_pred cccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccc
Q 040160 80 SSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVE 159 (459)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 159 (459)
.. ++ ++.||+++ +++.+++|+||
T Consensus 77 ~~---------------------------~~------~~~~~~~~----~~~~~~~gagn-------------------- 99 (447)
T PLN00220 77 RS---------------------------GP------YGQIFRPD----NFVFGQSGAGN-------------------- 99 (447)
T ss_pred hc---------------------------Cc------cccccCcc----ceEecccCCCC--------------------
Confidence 43 12 45567776 88889999998
Q ss_pred cccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchH
Q 040160 160 FWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAA 238 (459)
Q Consensus 160 ~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s 238 (459)
+| ++|+ |+.|.++ .|+++|+||+++|+||+||||+++++++||| ||+|+
T Consensus 100 nw---a~G~---------------------~~~g~~~------~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs 149 (447)
T PLN00220 100 NW---AKGH---------------------YTEGAEL------IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGT 149 (447)
T ss_pred cc---Ccee---------------------ecccHHH------HHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHH
Confidence 99 9997 8889999 9999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCc
Q 040160 239 DLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKP 318 (459)
Q Consensus 239 ~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~ 318 (459)
.++|.|+||||++.+++++|+|+. ..++.++++||++|++++|.+++|++++++|++|.+ +|.+.+.++.+++
T Consensus 150 ~l~~~l~~~y~~~~~~~~~v~P~~------~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~-i~~~~~~i~~~sf 222 (447)
T PLN00220 150 LLISKIREEYPDRMMLTFSVFPSP------KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYD-ICFRTLKLTTPSF 222 (447)
T ss_pred HHHHHHHHhccccceeeeEEECCC------cCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHH-HHHHhhcCCCCCh
Confidence 999999999999999999999986 467889999999999999999999999999999998 8888899999999
Q ss_pred chHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHhhh
Q 040160 319 YHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQSLL 394 (459)
Q Consensus 319 ~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~l~ 394 (459)
.++|.+||+.+.++|.++||++. .+.++.+++.+|+|+|+.||+.... .|+........ +..+.
T Consensus 223 ~~~N~lIa~~is~it~slRFpG~----------ln~~l~~l~~nLVP~P~l~Fl~~s~--~P~~~~~~~~~~~~t~~~l~ 290 (447)
T PLN00220 223 GDLNHLISATMSGVTCCLRFPGQ----------LNSDLRKLAVNLIPFPRLHFFMVGF--APLTSRGSQQYRALTVPELT 290 (447)
T ss_pred HHHHhHhhccccccchhhccCCc----------CCccHHHHHHHhCCccceeEeeccc--CcccccccccccccCHHHHH
Confidence 99999999999999999999954 5688999999999999999977655 45543222111 12233
Q ss_pred ccCC---CCCCCCcccccchhhhhheeecccccCCCCccCHHHHHHHHHHHhc
Q 040160 395 GNLQ---PLTPEVSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYG 444 (459)
Q Consensus 395 ~~l~---~ltp~~~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~ 444 (459)
+.+. .+-..++. ..++|++.++++||. .+..++.+++.....
T Consensus 291 ~~l~~~~n~l~~~~~-~~gk~la~~~~~RG~-------~~~~ev~~~~~~l~~ 335 (447)
T PLN00220 291 QQMWDAKNMMCAADP-RHGRYLTASAMFRGK-------MSTKEVDEQMINVQN 335 (447)
T ss_pred HHHHhhhhcccccCC-CCchhHHHHHHHcCC-------CCHHHHHHHHHHHHh
Confidence 3331 11122333 357899999999994 456777777766543
No 13
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=7e-54 Score=420.59 Aligned_cols=325 Identities=21% Similarity=0.298 Sum_probs=262.6
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcc
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSM 79 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l 79 (459)
||||||||+||||||||..||...+.||++.+++-..........+.|+||+ +..++ .|+||||++||+|. |..+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFy--qadd~--~yipRAvLvDlEPrVIn~~ 77 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFY--QADDN--HYIPRAVLVDLEPRVINQI 77 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCcccccccee--eccCC--ccccceeeeccchHHHhcc
Confidence 6999999999999999999999999999999988743222234467899997 45556 89999999999999 6655
Q ss_pred cccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccC--CCCCCCccchhcchhhhhhcccc
Q 040160 80 SSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGT--SSGKSDSQREIQDKDIVELLDNH 157 (459)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 157 (459)
.. .+ +..||+++ ++.-.. .|+||
T Consensus 78 ~~---------------------------~~------~s~l~n~e----ni~~s~~ggGAGN------------------ 102 (448)
T KOG1374|consen 78 LS---------------------------SP------YSGLYNPE----NIFLSDHGGGAGN------------------ 102 (448)
T ss_pred cc---------------------------ch------hhcccCcc----ceEEecCCCCccc------------------
Confidence 33 12 56677777 554433 34445
Q ss_pred cccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccc
Q 040160 158 VEFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAV 236 (459)
Q Consensus 158 v~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl 236 (459)
+| +.| |.+|+.+ .|+|+|.|++++|.||+|.||+++||++||| ||+
T Consensus 103 --NW---A~G----------------------Y~~G~~~------~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGl 149 (448)
T KOG1374|consen 103 --NW---ASG----------------------YSQGERV------QEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGL 149 (448)
T ss_pred --cc---ccc----------------------cccchhh------HHHHHHHHHHhhcCCCcccceeEEEeecCCCCcch
Confidence 99 888 7899999 9999999999999999999999999999999 999
Q ss_pred hHHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCC
Q 040160 237 AADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENE 316 (459)
Q Consensus 237 ~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~ 316 (459)
||.++|.|+|+||||-+.+++|+|... +.+++++++||++|+|++|.+++|+++.++|.+|.+ +|...++++.+
T Consensus 150 GS~llErL~drypkkliqtysVfPn~d-----~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~r-ia~~~l~i~~p 223 (448)
T KOG1374|consen 150 GSFLLERLNDRYPKKLVQTYSVFPNQD-----ESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHR-IAADRLHIQNP 223 (448)
T ss_pred HHHHHHHHHHhchhhhheeeeeccCCC-----CccceEEecchHHHHHHHHhhCCCeEEEeccHHHHH-HHHHHhcCCCC
Confidence 999999999999999999999999762 578999999999999999999999999999999998 89999999999
Q ss_pred CcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCC-------c
Q 040160 317 KPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQ-------H 389 (459)
Q Consensus 317 ~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~-------~ 389 (459)
++.|+|.++|+.|++.|.|+|+++. .+.+|.++...|+|.|+.||+.... .|+....... .
T Consensus 224 tF~~iNqLvstims~st~t~r~p~Y----------m~n~l~~l~~~LiP~P~lhfl~~~~--tP~~sd~~~~~~~rkttv 291 (448)
T KOG1374|consen 224 TFSQINQLVSTIMSASTTTLRYPGY----------MNNDLIGLYASLIPTPELHFLMTGY--TPLTSDNSLATAVRKTTV 291 (448)
T ss_pred CHHHHHHHHHHHHhhccccccchhh----------ccCcHHHHHhhcCCCCCeeeeeccC--CcccChhhhhhhhhcchH
Confidence 9999999999999999999999854 6789999999999999999987655 6776542211 1
Q ss_pred hHhhhccCCCCCCCCcccc-------cchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 390 EQSLLGNLQPLTPEVSEDV-------EDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 390 ~~~l~~~l~~ltp~~~~~~-------~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
.| .++.| |-|...|.. ...|+.....+.|-+. .++|..++-+..++
T Consensus 292 ld-vmRrL--L~pkn~mvs~~~~~~~~~~~~si~n~iqg~vd-------p~~v~~s~~r~~dr 344 (448)
T KOG1374|consen 292 LD-VMRRL--LQPKNMMVSTADDLSGNPCYISILNIIQGEVD-------PTQVHKSLQRIRDR 344 (448)
T ss_pred HH-HHHHH--hCcchhhhhccccccCCcchHhHHhhhhcccC-------HHHHHHHHHHHHhc
Confidence 11 11233 555544421 2245566666666665 45566666555544
No 14
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=4.2e-50 Score=420.73 Aligned_cols=314 Identities=19% Similarity=0.228 Sum_probs=251.9
Q ss_pred EEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCccccc
Q 040160 4 IVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSMSSR 82 (459)
Q Consensus 4 IITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l~~~ 82 (459)
|||||+||||||||..||++.+.||++..++... ......++||. ++.++ +|+||+|+||++++ +..+...
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~--e~~~~--~~~pRav~iD~ep~vi~~i~~~ 73 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFS--EKSDG--QPIARSVLVDMEPKVIESTLSK 73 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeec--ccCCC--CcCCceeecCCCchHHHHhhcC
Confidence 8999999999999999999999999987665421 11235678995 55566 89999999999999 7777541
Q ss_pred ccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhccccccccc
Q 040160 83 GVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFWT 162 (459)
Q Consensus 83 g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Ws 162 (459)
+.. .+.+|+++ +++.+++|+|| +|
T Consensus 74 ---------------------------~~~----~~~~f~~~----~~~~~~~gagn--------------------nw- 97 (446)
T cd02189 74 ---------------------------SSG----GTWKYDKK----NVICQQSGSGN--------------------NW- 97 (446)
T ss_pred ---------------------------CCC----cccccCch----heeecCCCCcc--------------------ch-
Confidence 100 12356666 78888888888 99
Q ss_pred ccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHH
Q 040160 163 DFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLL 241 (459)
Q Consensus 163 Df~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~ll 241 (459)
++|| |+.|.++ .|+++|+||+++|+||++|||+++++++||| ||+|+.++
T Consensus 98 --a~Gy---------------------~~~g~~~------~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~ 148 (446)
T cd02189 98 --AYGY---------------------YVHGPQI------KEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVT 148 (446)
T ss_pred --hccc---------------------cccchhh------HHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHH
Confidence 9996 8889998 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchH
Q 040160 242 ENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHC 321 (459)
Q Consensus 242 e~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~ 321 (459)
|+|+||||++.+++++|+|+. .++.++++||++|++++|.+++|++++++|++|.+ +|...++++.+++.++
T Consensus 149 e~l~d~y~~~~~~~~~v~P~~-------~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~-~~~~~~~~~~~~~~~~ 220 (446)
T cd02189 149 ELLRDEYPESLLLNIVVWPYT-------TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHR-ICSKLRNLKNVSLSDI 220 (446)
T ss_pred HHHHHhcCccceeeeeccCCC-------CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHH-HHHHhcCCCCCCHHHH
Confidence 999999999999999999964 46788999999999999999999999999999998 8888889999999999
Q ss_pred HHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHhhhccC
Q 040160 322 SAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQSLLGNL 397 (459)
Q Consensus 322 saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~l~~~l 397 (459)
|.+||++|.++|.|.|+.+... ..+....+.+|.+++++|+|+||.||++... .|+........ +..+.+.+
T Consensus 221 N~~Ia~~l~~~~~~~r~~~~~~--~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~--~P~~~~~~~~~~~~~~~~l~~~l 296 (446)
T cd02189 221 NKVIAHQLASLLQPSLDSTGSN--GALAGRSTNPLNDLVEDLCPHPAYKLLTIRS--LPQMPEKSLAFSTFSWSALLKRL 296 (446)
T ss_pred HHHHHHHHHHHhhHhhccCccc--ccccccccCCHHHHHhhCcCCCCceeeeccc--CCcccccccccccCCHHHHHHHH
Confidence 9999999999999999743110 0011225688999999999999999988766 56644322221 22333332
Q ss_pred CC-------CC------------------CCCcccccchhhhhheeecccc
Q 040160 398 QP-------LT------------------PEVSEDVEDLQAVESMIIHGAL 423 (459)
Q Consensus 398 ~~-------lt------------------p~~~~~~~~~~~~~s~~~rG~~ 423 (459)
++ +. |.+.. ..+++++..+++||..
T Consensus 297 ~qm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~~~i~RG~~ 346 (446)
T cd02189 297 HQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKST-HFNKSLANLLILRGKD 346 (446)
T ss_pred HHhhccccccccccccccccccccccccccccCC-cccceeeeeeeeeCCC
Confidence 11 11 11222 3688999999999964
No 15
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.7e-48 Score=398.28 Aligned_cols=282 Identities=21% Similarity=0.319 Sum_probs=233.9
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCccc
Q 040160 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSMS 80 (459)
Q Consensus 2 rEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l~ 80 (459)
|||||||+||||||||..||++.+.+| |+||+|+||++++ +..++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh----------------------------------~~pR~v~iD~e~~~i~~i~ 46 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH----------------------------------LKARAVLIDMEEGVVNEIL 46 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh----------------------------------cCCcceeccCChhHHHHHh
Confidence 799999999999999999999987763 7899999999999 77665
Q ss_pred ccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhccccccc
Q 040160 81 SRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEF 160 (459)
Q Consensus 81 ~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 160 (459)
. ++ .+.+++++ +++.++.|+|| +
T Consensus 47 ~---------------------------~~------~~~~~~~~----~~~~~~~gaGn--------------------n 69 (379)
T cd02190 47 K---------------------------GP------LRDLFDET----QLVTDVSGAGN--------------------N 69 (379)
T ss_pred c---------------------------Cc------cccccCcc----cccccCCCCCC--------------------C
Confidence 4 12 34567777 88888888888 8
Q ss_pred ccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHH
Q 040160 161 WTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAAD 239 (459)
Q Consensus 161 WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~ 239 (459)
| ++|+ |..|.+. .|+++|+||+++|+||++|||+++++++||| ||+|+.
T Consensus 70 ~---a~G~---------------------~~~g~~~------~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~ 119 (379)
T cd02190 70 W---AVGY---------------------HQYGHQY------IDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTY 119 (379)
T ss_pred c---ccee---------------------eccchhH------HHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHH
Confidence 9 9996 7788888 9999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcc
Q 040160 240 LLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPY 319 (459)
Q Consensus 240 lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~ 319 (459)
++|.|+||||++.+++++|+|+. ..+.++++||++|+|++|.+++|++++++|++|. .+.
T Consensus 120 l~e~l~~~y~~~~~~~~~v~P~~-------~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~-------------~~~ 179 (379)
T cd02190 120 VLELLADEFPEVYRFVTSVYPSA-------DDDVITSPYNSVLALRELIEHADCVLPIENQALV-------------PFD 179 (379)
T ss_pred HHHHHHHhcCccceEEEeecCCC-------CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH-------------HHH
Confidence 99999999999999999999986 3667889999999999999999999999999886 577
Q ss_pred hHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHhhhc
Q 040160 320 HCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQSLLG 395 (459)
Q Consensus 320 ~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~l~~ 395 (459)
++|.+||++|.++|.+.||++. .+.++.+++++|+|+||.||+.... .|+........ +..+.+
T Consensus 180 ~~N~~ia~~i~~~t~~~rf~g~----------~n~d~~~i~~nLvP~P~l~fl~~s~--~P~~~~~~~~~~~~s~~~l~~ 247 (379)
T cd02190 180 AMNSIVANLLLNLTSSMRFEGS----------LNVDLNEITMNLVPFPRLHFLVSSL--SPLYPLADVNVPPRRLDQMFS 247 (379)
T ss_pred HHHHHHHhhhcCccceeecccc----------cccchhhhccccccCCCceeccccc--ccccchhhccccCCCHHHHHH
Confidence 9999999999999999999854 6789999999999999999997766 56544322111 122233
Q ss_pred cC----CCCCCCCcccccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 396 NL----QPLTPEVSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 396 ~l----~~ltp~~~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
.| ..|- .+.+ ..++|++.++++||. .+..++.+++.+..+.
T Consensus 248 ~l~~~~~~m~-~~~~-~~~kyls~~~i~RG~-------~~~~ei~~~~~~l~~~ 292 (379)
T cd02190 248 DAFSRNHQLI-RADP-KHGLYLACALLVRGN-------VSVSDLRRNIERLKPK 292 (379)
T ss_pred HHHcccccee-ecCC-CcchHHHHHHHHcCC-------CCHHHHHHHHHHHhcc
Confidence 33 1221 1222 368899999999993 5677888887765443
No 16
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=2.3e-46 Score=366.59 Aligned_cols=319 Identities=20% Similarity=0.287 Sum_probs=275.1
Q ss_pred CeeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccc--cccCccccccccccccCCCcceeecceeEeccCCCCCc
Q 040160 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVF--RNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGS 78 (459)
Q Consensus 1 MrEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~--~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~lg~ 78 (459)
|||||.|++||.|.|||+..|.+.+.||++.+++....+. .......+.|| .+|..| +++||+++|||+|.++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff--~~t~~~--k~~pr~~fVDlEPtide 76 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFF--SETGAG--KHVPRAVFVDLEPTIDE 76 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceee--cccccc--cccceeEEEeccCccch
Confidence 9999999999999999999999999999999998753221 11112456788 577777 89999999999999877
Q ss_pred ccccccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhccccc
Q 040160 79 MSSRGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHV 158 (459)
Q Consensus 79 l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v 158 (459)
++. ++ ++.||.++ +++.|+++++|
T Consensus 77 vrt---------------------------G~------y~~lfHPe----qlitGkedAan------------------- 100 (407)
T KOG1376|consen 77 VRT---------------------------GT------YRQLFHPE----QLITGKEDAAN------------------- 100 (407)
T ss_pred hcc---------------------------cc------hhhccCch----hccCcchHhhh-------------------
Confidence 765 33 78899998 89999988887
Q ss_pred ccccccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-Ccch
Q 040160 159 EFWTDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVA 237 (459)
Q Consensus 159 ~~WsDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~ 237 (459)
+ |+|+| |++|+|+ .|..+|+||+.++.|..||||.+||+.+||+ ||++
T Consensus 101 -n---yArgh---------------------yt~g~e~------id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~ 149 (407)
T KOG1376|consen 101 -N---YARGH---------------------YTIGKEI------IDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLG 149 (407)
T ss_pred -h---HHhhh---------------------hhcchhh------hHHHHHHHHHHHHhhccccceEEEEeccCCCcCCcc
Confidence 3 49998 9999999 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCC
Q 040160 238 ADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEK 317 (459)
Q Consensus 238 s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~ 317 (459)
+.++|.|..+|+||..+.|+++|.+ ..+..++++||.+|+.+...+++|+.++++|++.+. +|.+.+.+..|+
T Consensus 150 s~lmerls~~~GKkskl~fsiypap------qvSt~vvePynsiltth~tle~sD~sf~vdnea~Yd-icr~~l~i~rPt 222 (407)
T KOG1376|consen 150 SLLMERLSVDYGKKSKLEFSIYPAP------QVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYD-ICRRNLDIERPT 222 (407)
T ss_pred chhhhhhhhhhhhccccccccccCc------cccccccCCccccccceeecccCcceeecCchhhcc-hhhhccccCCcc
Confidence 9999999999999999999999988 678899999999999999999999999999999998 999999999999
Q ss_pred cchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchHhhhccC
Q 040160 318 PYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNL 397 (459)
Q Consensus 318 ~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~~l~~~l 397 (459)
+-|+|.+++++++++|.++||.+. .+++|.+|+++|+|+|- -.|..+..+..++......+
T Consensus 223 yt~lnr~i~qVvSsitaSlrf~g~----------lnvdl~efqTnlVpypl---------yap~~s~~~a~he~~sv~~i 283 (407)
T KOG1376|consen 223 YTNLNRLIAQVVSSITASLRFDGA----------LNVDLTEFQTNLVPYPL---------YAPVISAEKAYHEQLSVAEI 283 (407)
T ss_pred ccchhhhHHhhhcccccccccCCc----------ccccHHHHHhhCCCCcc---------cccchhhcccchhhhhHHhh
Confidence 999999999999999999999954 68999999999999992 24554444444443333444
Q ss_pred --CCCCCCCcc----cccchhhhhheeecccccCCCCccCHHHHH
Q 040160 398 --QPLTPEVSE----DVEDLQAVESMIIHGALRSDGQRASISEVK 436 (459)
Q Consensus 398 --~~ltp~~~~----~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~ 436 (459)
.+|.|.+.| ...++|+|-.+++||++...+.++-++.+|
T Consensus 284 t~~~fe~~~qmvkcDP~~gkyma~cllyrgdvvP~~v~~A~a~ik 328 (407)
T KOG1376|consen 284 TNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIK 328 (407)
T ss_pred ccccccccccccccCCccchHHHHHHhccCCcCcccchHHHHhhh
Confidence 278887554 147999999999999999988876676665
No 17
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=7.1e-45 Score=375.50 Aligned_cols=284 Identities=21% Similarity=0.355 Sum_probs=232.7
Q ss_pred eEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcccc
Q 040160 3 EIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSMSS 81 (459)
Q Consensus 3 EIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l~~ 81 (459)
|||+||+||||||||.+||++. |+||+++. +..+..
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-------------------------------------------i~iD~e~~~i~~i~~ 37 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-------------------------------------------ILVDLDPRVINEILQ 37 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-------------------------------------------HcccCCcchhhhhhc
Confidence 8999999999999999999875 88888887 655543
Q ss_pred cccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccccc
Q 040160 82 RGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFW 161 (459)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~W 161 (459)
.+ .+.+++++ +.+.++.++|| +|
T Consensus 38 ---------------------------~~------~~~~~~~~----~~~~~~~g~gn--------------------n~ 60 (382)
T cd06059 38 ---------------------------GQ------LSKLFDPN----QLVNGKEGSGN--------------------NW 60 (382)
T ss_pred ---------------------------cc------ccccCCcc----cEEeccccccc--------------------cc
Confidence 11 23355555 67777788887 89
Q ss_pred cccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHH
Q 040160 162 TDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADL 240 (459)
Q Consensus 162 sDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~l 240 (459)
++++ +..|.+. .|+++|+||+++|+||++|||+++++++||| ||+|+.+
T Consensus 61 ---a~G~---------------------~~~g~~~------~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l 110 (382)
T cd06059 61 ---ARGY---------------------YTIGPEL------IDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLL 110 (382)
T ss_pred ---cccc---------------------cccCHHH------HHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHH
Confidence 8996 7788777 9999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcch
Q 040160 241 LENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYH 320 (459)
Q Consensus 241 le~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~ 320 (459)
+|.|+|||||+.+++++++|+. ...++++++||++|++++|.+++|+++|++|++|.+ +|.+.+.++.+++.+
T Consensus 111 ~e~l~d~y~~~~i~~~~v~P~~------~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~-~~~~~~~~~~~~~~~ 183 (382)
T cd06059 111 LELLSDEYPKILINTFSIFPSP------QGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYN-ILTRQLDIDEPSFDD 183 (382)
T ss_pred HHHHHHhcCccceEeEEEeccC------ccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHH-HHHHhcCCCCCChHH
Confidence 9999999999999999999986 333478999999999999999999999999999988 777778888999999
Q ss_pred HHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHhhhcc
Q 040160 321 CSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQSLLGN 396 (459)
Q Consensus 321 ~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~l~~~ 396 (459)
+|++||++|+++|.|+|+++. .++++.+++.+|+|+||.||+.... .|+........ ...+.+.
T Consensus 184 ~N~iia~~l~~it~~~r~~g~----------~n~d~~~i~~~LvP~p~~~fl~~s~--~P~~~~~~~~~~~~~~~~~~~~ 251 (382)
T cd06059 184 LNNIIAQIISSITASLRFPGY----------LNFDLRKLATNLVPFPRLHFLTPSF--APLISYDSQTTEKLNLLQIINE 251 (382)
T ss_pred HHHHHHHhhcccccccccCCC----------cCCCHHHHhhhcCCCCCceeccccc--cccccchhcccccCCHHHHHHH
Confidence 999999999999999999854 6789999999999999999988766 46644322111 1223333
Q ss_pred CCCCCCC-----CcccccchhhhhheeecccccCCCCccCHHHHHHHHHHHhcc
Q 040160 397 LQPLTPE-----VSEDVEDLQAVESMIIHGALRSDGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 397 l~~ltp~-----~~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~~~~~~~~~ 445 (459)
+ +.|. +.. ..+++++.++++||.. +..++.+++.+....
T Consensus 252 l--~~~~~~~~~~~~-~~~~~la~~~~~RG~~-------~~~~v~~~~~~~~~~ 295 (382)
T cd06059 252 L--FNNDNSFFSCDP-TKGRYLAAALIFRGDV-------FQSEIQEAINKLKNK 295 (382)
T ss_pred H--hhcccceeecCC-CcchHHHHHHHHhCCC-------CHHHHHHHHHHHHHh
Confidence 3 2222 222 3688999999999964 566777777665433
No 18
>PF14881 Tubulin_3: Tubulin domain
Probab=100.00 E-value=5.6e-45 Score=337.51 Aligned_cols=171 Identities=37% Similarity=0.709 Sum_probs=148.4
Q ss_pred ccccccccccccccccCCcccccCCccCC--CCCCCcccccccccccCcchhhHHHH-hhhhhhccCCCcceEEEecCCC
Q 040160 155 DNHVEFWTDFSKVHYHPQSLYELGGLWMD--PQDFDNYGIGKDAFSEGFRGEEICER-LRFFVEESDHIQGFQFVVDDSG 231 (459)
Q Consensus 155 ~~~v~~WsDf~~~~~hPrS~~~l~~~~~~--~~~f~~y~~G~~~~~~~~~~e~~~d~-IR~~vEeCD~lQGFqi~~d~~g 231 (459)
.++||+||||+|++|||||+++|++|.|+ ..+|+.|+.|.++|++..+.+++.|+ ||+++||||+|||||+++|+++
T Consensus 6 ~~~vryWSDy~r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~ 85 (180)
T PF14881_consen 6 PSNVRYWSDYNRVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDD 85 (180)
T ss_pred CCCCEECCCCCcceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCC
Confidence 46899999999999999999999999885 46999999999999997777777775 9999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCCCCe-eEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCccccccc
Q 040160 232 GFSAVAADLLENIADEYANTPV-LLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTF 310 (459)
Q Consensus 232 GfSGl~s~lle~L~DEYpk~~i-~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~ 310 (459)
|||||++.+||+|+|||||+++ +.|++.++..... +.......+.+|+++++.+|.++|+++|||....
T Consensus 86 gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~-~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~--------- 155 (180)
T PF14881_consen 86 GWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSR-DAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS--------- 155 (180)
T ss_pred chHhHHHHHHHHHHHHcCCCceEEeecCCCcccccc-chhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC---------
Confidence 9999999999999999999996 7777765542211 1222345678999999999999999999999311
Q ss_pred ccCCCCCcchHHHHHHHHHhhcccCccc
Q 040160 311 LRIENEKPYHCSAVYAAALHSATLPYRM 338 (459)
Q Consensus 311 l~~~~~~~~~~saliA~~l~t~T~p~R~ 338 (459)
+..+.||+|||+|++|+|+|+|||+
T Consensus 156 ---d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 156 ---DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred ---cCCCcHHHHHHHHHHHHhccccCCC
Confidence 3468999999999999999999996
No 19
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3.7e-41 Score=341.38 Aligned_cols=219 Identities=23% Similarity=0.283 Sum_probs=178.4
Q ss_pred ccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCcccccc
Q 040160 190 YGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNLR 268 (459)
Q Consensus 190 y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~ 268 (459)
+..|.+. .|+++|+||+++|+||++|||+++++++||| ||+|+.++|.|+||||++++++++++|+.
T Consensus 65 ~~~~~~~------~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~------ 132 (328)
T cd00286 65 ETAGEEY------QEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGP------ 132 (328)
T ss_pred ccccHHH------HHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCC------
Confidence 6677656 8999999999999999999999999999999 99999999999999999999999999986
Q ss_pred chhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCCCC
Q 040160 269 SRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSF 348 (459)
Q Consensus 269 ~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~ 348 (459)
... .++++||++|++++|.+++|+++|++|++|.+ .|.+.+.++.+.++++|.+||++|+++|.|+|+++.
T Consensus 133 ~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~-~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~------- 203 (328)
T cd00286 133 DEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFD-ICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGS------- 203 (328)
T ss_pred CCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHH-HhHHhcCCCCCCHHHHHHHHHhhccccccccccCcc-------
Confidence 222 68999999999999999999999999999988 777778888899999999999999999999999854
Q ss_pred CCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCc----hHhhhccCCCCCCC-----Ccccccchhhhhheee
Q 040160 349 DVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQH----EQSLLGNLQPLTPE-----VSEDVEDLQAVESMII 419 (459)
Q Consensus 349 ~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~----~~~l~~~l~~ltp~-----~~~~~~~~~~~~s~~~ 419 (459)
.++++.++.++|+|+|+.++++... .|+.....+.. ...+.+.+ +-+. +.. ..+++++..+.+
T Consensus 204 ---~n~d~~~~~~~l~p~p~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~ 275 (328)
T cd00286 204 ---LNVDLRELSENLVPFPRLHFLMVGY--APLDSEGSATPTTLRVAELVRQA--LRSKNQMVVCDP-THGGYIAALLLV 275 (328)
T ss_pred ---ccchHHHHhhhcCCCCCceeecccc--CccccccccccccCCHHHHHHHH--hCCCCeeeccCC-CccchHHHHHHH
Confidence 5789999999999999999887665 34433221111 11222222 2222 222 246788999999
Q ss_pred cccccCCCCccCHHHHHHHHHHHhc
Q 040160 420 HGALRSDGQRASISEVKETVNAIYG 444 (459)
Q Consensus 420 rG~~~~~~~~~~~~~~~~~~~~~~~ 444 (459)
||.+ +..+|.++++.-.+
T Consensus 276 rG~~-------~~~~v~~~~~~l~~ 293 (328)
T cd00286 276 RGPV-------SPSEVREGIARVAP 293 (328)
T ss_pred hCCC-------ChHHHHHHHHHHHH
Confidence 9965 77778777765443
No 20
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=100.00 E-value=1.5e-35 Score=255.65 Aligned_cols=115 Identities=40% Similarity=0.769 Sum_probs=103.4
Q ss_pred eeEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCCCCcccc
Q 040160 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGSLGSMSS 81 (459)
Q Consensus 2 rEIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~lg~l~~ 81 (459)
|||||||+|++||||||||||+||+.+.+..+.. ..++|+||+||+|++.+|.+|||||+|+||+|+++|+|++
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL~~ 74 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPDEK------PSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSLRK 74 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCcccc------CcccCCceEEecccCcCCCeeECCcEEEEecCCCcCcccc
Confidence 7999999999999999999999999975544332 1468999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhc
Q 040160 82 RGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYE 122 (459)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~ 122 (459)
.|.||+....+.....+|+|++++++++|.+||+||++|++
T Consensus 75 ~g~ly~~~~~~~~~~~~w~g~~~~~~~~~~~ks~yq~~Ld~ 115 (115)
T PF10644_consen 75 YGYLYEQDDSAPDNQSTWDGKVEVQRQPPIPKSEYQQDLDQ 115 (115)
T ss_pred cccccccCcccccccccCCCceEEEeCCCCCCCHHHHHhcC
Confidence 99999966566667789999999999999999999999863
No 21
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=4e-35 Score=280.52 Aligned_cols=212 Identities=25% Similarity=0.471 Sum_probs=178.3
Q ss_pred eEEEEecCChhhHHHHHHHHHHHHHcCCCCCCCCCccccccCccccccccccccCCCcceeecceeEeccCCC-CCcccc
Q 040160 3 EIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLVSVGFQGS-LGSMSS 81 (459)
Q Consensus 3 EIITlQ~G~~~N~iG~hfWN~qe~~~~~~~d~~~~~~~~~~~~~~dvlfR~get~~g~~tytPR~l~vDl~~~-lg~l~~ 81 (459)
|||+||+|||||+||..||++...+|++..+.... ....+.++||+ +...| +|+||+|+||+++. +..++.
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~~----~~~~~~~~~f~--~~~~~--~~~~r~i~iDtd~~~l~~i~~ 72 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKSQ----YNRENINSFFS--ESSSG--KYVPRAIAIDTDPKVLDEIRA 72 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSSS----TTSSTGCCTEE--ESTTT--BESEEEEEEESSHHHHHHHHT
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccccc----cccccccceee--ecccc--ccccccccccccccccccccc
Confidence 89999999999999999999999999988762211 23457789996 44455 89999999999998 776643
Q ss_pred cccccCCCCCCCCCccccCCcccccccCCcchhhhhhhhhccccccccccccCCCCCCCccchhcchhhhhhcccccccc
Q 040160 82 RGVLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDIVELLDNHVEFW 161 (459)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~~~~f~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~W 161 (459)
.+ .+.++.++ +++.|++++++ +|
T Consensus 73 ---------------------------~~------~~~l~~~~----~~~~~~~g~g~--------------------n~ 95 (216)
T PF00091_consen 73 ---------------------------SP------KRSLFDPN----NLISGQEGSGN--------------------NW 95 (216)
T ss_dssp ---------------------------SE------ETTESCGG----GEEETSSTSTT--------------------SH
T ss_pred ---------------------------cc------cccccccc----ccccccccccc--------------------cc
Confidence 11 22455555 67777777777 77
Q ss_pred cccccccccCCcccccCCccCCCCCCCcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHH
Q 040160 162 TDFSKVHYHPQSLYELGGLWMDPQDFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADL 240 (459)
Q Consensus 162 sDf~~~~~hPrS~~~l~~~~~~~~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~l 240 (459)
++++ +..|.++ .++++|+||+.+|+||.+|||+++++++||| ||+++.+
T Consensus 96 ---~~G~---------------------~~~~~~~------~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l 145 (216)
T PF00091_consen 96 ---AVGY---------------------YTFGEEA------LEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVL 145 (216)
T ss_dssp ---HHHH---------------------HHHHHHH------HHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHH
T ss_pred ---cccc---------------------ccccccc------ccccccccchhhccccccccceecccccceecccccccc
Confidence 8886 6667777 9999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCc
Q 040160 241 LENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKP 318 (459)
Q Consensus 241 le~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~ 318 (459)
++.|+++||++++++++++|.. . +.++++||++++|+.|.+++|.+++++|++|.+ +|.+.+.++.+.+
T Consensus 146 ~~~l~~~y~~~~~~~~~ilP~~-------~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~-~~~~~l~~~~~~f 214 (216)
T PF00091_consen 146 AEMLREEYPKKPIISFSILPFS-------S-EGVVEPYNALLSLSELQEYADSVILFDNDALYK-ICKNQLGIENPAF 214 (216)
T ss_dssp HHHHHHTSTTSEEEEEEEE-CG-------G-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHH-HHHHTSSHSSHHH
T ss_pred chhhhccccccceeeccccccc-------c-ccccccceehhHHHHHHHhCCEEEEEcHHHHHH-HHhccCCCCCCCc
Confidence 9999999999999999999974 3 788999999999999999999999999999988 7777777765543
No 22
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=99.90 E-value=1.2e-24 Score=215.01 Aligned_cols=182 Identities=16% Similarity=0.175 Sum_probs=152.3
Q ss_pred ccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCcccccc
Q 040160 190 YGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNLR 268 (459)
Q Consensus 190 y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~ 268 (459)
|+.|.++ .|. .||+|||||+.|+++||+ +|+++++++.|++|||.+.+.++++.|+.
T Consensus 61 y~~ga~~------~ds----------~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~------ 118 (369)
T KOG1375|consen 61 YTEGAEL------VDS----------SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSP------ 118 (369)
T ss_pred eeeeeee------hhc----------ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCcc------
Confidence 8999988 544 999999999999999999 99999999999999999999999999987
Q ss_pred chhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCCCC
Q 040160 269 SRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSF 348 (459)
Q Consensus 269 ~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~ 348 (459)
.++.++++||+.|++++|.++||..++++|++|++ +|+..+.+..++ .+|...||.+.
T Consensus 119 -ksd~vvepyna~ls~~ql~en~~et~cidNeal~d-ic~~~lkl~~~~-------------g~tt~~rf~g~------- 176 (369)
T KOG1375|consen 119 -KSDTVVEPYNATLSVHQLVENADETFCIDNEALYD-ICFRTLKLKTPS-------------GVTTCLRFPGQ------- 176 (369)
T ss_pred -cccceecccccccchhhhhcCCCcccccccHHHHH-HHhhhhcccCCC-------------Cceeecccccc-------
Confidence 37899999999999999999999999999999999 999999888777 88999999865
Q ss_pred CCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchHhhhccCC--CCCCCCcccccchhhhhheeecc
Q 040160 349 DVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQ--PLTPEVSEDVEDLQAVESMIIHG 421 (459)
Q Consensus 349 ~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~~l~~~l~--~ltp~~~~~~~~~~~~~s~~~rG 421 (459)
.+.++..+.-+++|.||++++..-+ .|+.....+++...+...|+ .|.....+. ...|+..+.++||
T Consensus 177 ---lnadl~kl~vnmvpfp~lhffm~g~--~pl~s~~~~q~~a~tv~eltqq~fdaknmm~-a~dyLt~a~~~rG 245 (369)
T KOG1375|consen 177 ---LNADLTKLAVNMVPFPRLHFFMPGF--APLTSRGSQQYRALTVPELTQQMFDAKNMMT-ACDYLTVAAMFRG 245 (369)
T ss_pred ---cchhhhhhhhccCCCcchhhccccc--cccccccccccccccccccccccccCcchhh-hhhhhhhHHHhcc
Confidence 6688999999999999998876555 56666666665444434442 233333331 2338889999999
No 23
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.88 E-value=1.3e-23 Score=197.50 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=114.9
Q ss_pred ccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCccccccch
Q 040160 192 IGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSR 270 (459)
Q Consensus 192 ~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~ 270 (459)
.|+++ .|+++|+||+++|+| ++|+++++++||| ||+++.+++.++ +||+.. ++++++|. .
T Consensus 64 ~g~~~------~~~~~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--------~ 124 (192)
T smart00864 64 VGREA------AEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--------V 124 (192)
T ss_pred HHHHH------HHHHHHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--------e
Confidence 57777 889999999999999 9999999999999 999999999999 999876 89999983 2
Q ss_pred hhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccC
Q 040160 271 KQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRME 339 (459)
Q Consensus 271 ~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~ 339 (459)
.+.++++||+++++++|.+++|.+++++|++|.+ .+.+.+.+ .+.+.++|.+||++|.++|.++||+
T Consensus 125 ~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~-~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~ 191 (192)
T smart00864 125 FEGVVRPYNAELGLEELREHVDSLIVIDNDALLD-ICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFP 191 (192)
T ss_pred ecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHH-HHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4668899999999999999999999999999987 67666655 5688899999999999999999987
No 24
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.81 E-value=1e-19 Score=185.61 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=130.7
Q ss_pred ccccccccccCcchhhHHHHhhhhhhccCC--CcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCcccc
Q 040160 190 YGIGKDAFSEGFRGEEICERLRFFVEESDH--IQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMN 266 (459)
Q Consensus 190 y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~--lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~ 266 (459)
+..|+++ .++..|.||+.+|.||. +|+|+++++++||| +|+++.+++.++++|+ ++++++.++|..
T Consensus 72 ~~~G~~~------aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~---- 140 (349)
T cd02202 72 RELGAEV------AEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPAR---- 140 (349)
T ss_pred hHHHHHH------HHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCC----
Confidence 4567787 88899999999999997 99999999999999 9999999999999999 889999999976
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccC---CCCC
Q 040160 267 LRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRME---PVGP 343 (459)
Q Consensus 267 ~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~---~~g~ 343 (459)
.+..+++||+++++.+|.+++|.+++++|++|.+ .+.+ + .+.+.++|.+||+.|..++.+.|+. ..|
T Consensus 141 ----~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~-~~~~---~-~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g- 210 (349)
T cd02202 141 ----EEGERYSANAARSLDALSEEADAIILFDNDAWKR-KGES---V-EEAYDRINEEIARRIGLLLRAGEANAGDSVG- 210 (349)
T ss_pred ----CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhh-hccc---h-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCC-
Confidence 2347899999999999999999999999999987 4432 2 2577789999999999999999992 112
Q ss_pred CCCCCCCCCCcChHHHhhhccCCCch
Q 040160 344 TADSFDVSGAVDFNGFVQMLAGQARQ 369 (459)
Q Consensus 344 ~~~~~~~~~~~~l~~l~~~L~~~~r~ 369 (459)
..++|+.++..+|...+--
T Consensus 211 -------~invD~~dv~~~L~~~G~~ 229 (349)
T cd02202 211 -------ESVLDASEVINTLSGGGFA 229 (349)
T ss_pred -------eEeccHHHHHHHhccCCeE
Confidence 1679999999999865433
No 25
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.60 E-value=1.4e-15 Score=152.50 Aligned_cols=209 Identities=14% Similarity=0.119 Sum_probs=150.6
Q ss_pred cccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCccccc
Q 040160 189 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNL 267 (459)
Q Consensus 189 ~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~ 267 (459)
.+..|++. .+++.|+||+.+|.||. |+++++++||| ||++..+++.++|+|+ +++++.|.+
T Consensus 63 ~~~~G~~~------a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~----~~~~vvt~P----- 124 (303)
T cd02191 63 NPELGAEA------AEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT----LTVAVVTLP----- 124 (303)
T ss_pred CHHHHHHH------HHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC----CEEEEEeCC-----
Confidence 45667777 88999999999999994 99999999999 9999999999999995 455555544
Q ss_pred cchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCCC
Q 040160 268 RSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADS 347 (459)
Q Consensus 268 ~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~ 347 (459)
...+..+++||+.+++++|.+++|.+++++|++|.+ .+.+ +.++ +.+.++|.+||+++.++|...|+++.
T Consensus 125 -f~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~-~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~g~------ 194 (303)
T cd02191 125 -FSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQ-IGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIEGE------ 194 (303)
T ss_pred -cccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHH-Hhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccCCc------
Confidence 234567899999999999999999999999999987 5654 6664 47778999999999999999999854
Q ss_pred CCCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCC-chHhhhccCC-CCCCCCcccccchhhhhheeecccccC
Q 040160 348 FDVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQ-HEQSLLGNLQ-PLTPEVSEDVEDLQAVESMIIHGALRS 425 (459)
Q Consensus 348 ~~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~-~~~~l~~~l~-~ltp~~~~~~~~~~~~~s~~~rG~~~~ 425 (459)
.++|+.++.+.|...+.- .+. +....+.+ ..+.+.+-+. +|+-.++.....+ .-+.+.
T Consensus 195 ----invD~~dv~~~l~~~G~a----~ig----~g~~~g~~~~~~a~~~Al~~pll~~~~~~~A~~---~Lv~i~----- 254 (303)
T cd02191 195 ----INVDFADVKNVMDGGGVA----MVG----YGSEDVTNRATEAVRKAALGPLLLPCEIEGAEG---ALLVMA----- 254 (303)
T ss_pred ----ccCCHHHHHHHhccCCeE----EEE----EEEecCchHHHHHHHHHHhCCCCCCCCcccCCE---EEEEEE-----
Confidence 679999999999643332 222 11111212 2233334443 5655554422122 112333
Q ss_pred CCCccCHHHHHHHHHHHhcc
Q 040160 426 DGQRASISEVKETVNAIYGH 445 (459)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~ 445 (459)
++...+..++.++++.-.+.
T Consensus 255 g~~~l~~~e~~~~~~~i~~~ 274 (303)
T cd02191 255 GPPDLNLKEIERVRKWLEEQ 274 (303)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 44467888888877754443
No 26
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.51 E-value=1.4e-14 Score=147.66 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=120.5
Q ss_pred cccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCccccc
Q 040160 189 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNL 267 (459)
Q Consensus 189 ~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~ 267 (459)
.|..|+++ .|+.+|+||+.+|.||.+ +++++++||| ||++. ++.++..||+ ++++++.+.+
T Consensus 80 ~~~~G~~~------aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~ap-via~~ake~~---~l~vaivt~P----- 141 (349)
T TIGR00065 80 NPEIGRKA------AEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAP-VVAKIAKELG---ALTVAVVTKP----- 141 (349)
T ss_pred CHHHHHHH------HHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHH-HHHHHHHHcC---CCEEEEEeCC-----
Confidence 35678888 899999999999999995 8999999999 99866 6666677775 4455554333
Q ss_pred cchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCCC
Q 040160 268 RSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADS 347 (459)
Q Consensus 268 ~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~ 347 (459)
...+..+++||+.+++.+|.+++|.+++++|++|.+ .+.. +.++. .+..+|.+||+++.++|.++|+++.
T Consensus 142 -f~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~-~~~~-~~i~~-af~~~N~iia~~i~~it~~ir~~g~------ 211 (349)
T TIGR00065 142 -FKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLE-VVPN-LPLND-AFKVADDVLVRAVKGISELITKPGL------ 211 (349)
T ss_pred -ccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHH-hhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhccCCc------
Confidence 234568899999999999999999999999999987 5655 66543 6778999999999999999999854
Q ss_pred CCCCCCcChHHHhhhccCCCc
Q 040160 348 FDVSGAVDFNGFVQMLAGQAR 368 (459)
Q Consensus 348 ~~~~~~~~l~~l~~~L~~~~r 368 (459)
.++|+.++.+.|...+.
T Consensus 212 ----iNvDf~dv~~vl~~~G~ 228 (349)
T TIGR00065 212 ----INIDFADVRAVMSGGGV 228 (349)
T ss_pred ----CcCCHHHHHHHHhcCCe
Confidence 67999999999975433
No 27
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.48 E-value=3.5e-14 Score=142.75 Aligned_cols=208 Identities=16% Similarity=0.145 Sum_probs=144.3
Q ss_pred ccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCcccccc
Q 040160 190 YGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNLR 268 (459)
Q Consensus 190 y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~ 268 (459)
+..|++. .++..|+||+.+|.||.+ +++++++||| ||++..+ .++..||+. .++.+.+.|..
T Consensus 64 ~~~g~~~------a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~i-a~~a~e~g~-~~~~vvt~Pf~------ 126 (304)
T cd02201 64 PEVGRKA------AEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVI-AKIAKEMGA-LTVAVVTKPFS------ 126 (304)
T ss_pred HHHHHHH------HHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHH-HHHHHHcCC-CEEEEEeCCcc------
Confidence 5667777 888999999999999985 9999999999 9997775 556667863 44444444543
Q ss_pred chhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCCCC
Q 040160 269 SRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSF 348 (459)
Q Consensus 269 ~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~ 348 (459)
.+..+++||+.+++..|.+++|.+++++|++|.+ .+.+.+.++. .+...|.+||+++.++|..+|+++.
T Consensus 127 --~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~-~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g~------- 195 (304)
T cd02201 127 --FEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLE-VVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPGL------- 195 (304)
T ss_pred --ccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHH-hhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCcc-------
Confidence 3556899999999999999999999999999987 6666666554 5677899999999999999999754
Q ss_pred CCCCCcChHHHhhhccCCCchhhhhhhcccccCCCCCCCCchHhhhccCC-CCCCCCcccccchhhhhheeecccccCCC
Q 040160 349 DVSGAVDFNGFVQMLAGQARQNTVVILDAAMPAPALNGKQHEQSLLGNLQ-PLTPEVSEDVEDLQAVESMIIHGALRSDG 427 (459)
Q Consensus 349 ~~~~~~~l~~l~~~L~~~~r~n~~~~~~~~~P~~~~~~~~~~~~l~~~l~-~ltp~~~~~~~~~~~~~s~~~rG~~~~~~ 427 (459)
.++|+.++.+.|...+.- .+...--- ......+.+.+-|. +|...++.....+ --+.+ .++
T Consensus 196 ---invD~~dv~~vl~~~G~a----~ig~g~~~---g~~r~~~Av~~Al~~pLl~~~~i~~A~~---~Lv~I-----~~~ 257 (304)
T cd02201 196 ---INLDFADVKTVMKNKGVA----LMGIGEAS---GENRAIEAAEKAISSPLLEDDSISGAKG---VLVNI-----TGG 257 (304)
T ss_pred ---ccCCHHHHHHHhccCCeE----EEEEEEec---CchHHHHHHHHHHhCcCcCCCChhcccE---EEEEE-----EcC
Confidence 679999999999765443 11111000 11122333434442 4444332211111 11222 344
Q ss_pred CccCHHHHHHHHHHHh
Q 040160 428 QRASISEVKETVNAIY 443 (459)
Q Consensus 428 ~~~~~~~~~~~~~~~~ 443 (459)
...+..++.++++.-.
T Consensus 258 ~~l~l~e~~~~~~~i~ 273 (304)
T cd02201 258 SDLTLEEVNEAAEIIK 273 (304)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4678888888888443
No 28
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.37 E-value=8.1e-13 Score=135.56 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=122.2
Q ss_pred cccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCccccc
Q 040160 189 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNL 267 (459)
Q Consensus 189 ~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~ 267 (459)
.+..|++. .++..|.||+.+|.||. |+|+++++||| ||++..+++.+++ |+ ...+.+.+.|+.
T Consensus 91 dp~~G~~a------aee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~----- 154 (378)
T PRK13018 91 DPEVGRKA------AEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK----- 154 (378)
T ss_pred ChHHHHHH------HHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc-----
Confidence 35567766 88899999999999998 99999999999 9999988888886 54 445566667765
Q ss_pred cchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCCC
Q 040160 268 RSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADS 347 (459)
Q Consensus 268 ~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~ 347 (459)
.+...+..|+.+++.+|.+++|.+++++|++|.+ +| +.+.++ ..+..+|.+||+++.++|..+|+++.
T Consensus 155 ---~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~-i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~G~------ 222 (378)
T PRK13018 155 ---FEGRARMQKAEEGIERLREAADTVIVIDNNRLLD-IV-PNLPIA-DAFSVADEVIAETVKGITETITKPSL------ 222 (378)
T ss_pred ---cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHH-HH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccCCc------
Confidence 2445688999999999999999999999999987 66 666665 35778999999999999999999854
Q ss_pred CCCCCCcChHHHhhhccCC
Q 040160 348 FDVSGAVDFNGFVQMLAGQ 366 (459)
Q Consensus 348 ~~~~~~~~l~~l~~~L~~~ 366 (459)
.++|+.++.+.|...
T Consensus 223 ----iN~Df~dv~~vl~~~ 237 (378)
T PRK13018 223 ----INLDFADVKSVMKGG 237 (378)
T ss_pred ----eecCHHHHHHHhccC
Confidence 679999999999743
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.17 E-value=3e-11 Score=124.24 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=122.2
Q ss_pred CcccccccccccCcchhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCcccc
Q 040160 188 DNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMN 266 (459)
Q Consensus 188 ~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~ 266 (459)
..+..|++. .++..|.||+.+|.||.+ +|++.++||| +|.+. ++..+..||+ +++++|.+.+
T Consensus 75 ~~pe~G~~a------aee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g---~ltvaVvt~P---- 137 (384)
T PRK09330 75 ANPEVGRKA------AEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG---ILTVAVVTKP---- 137 (384)
T ss_pred CCHHHHHHH------HHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC---CcEEEEEecC----
Confidence 345567777 888999999999999998 8899999999 88887 7888899986 5677776544
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCC
Q 040160 267 LRSRKQTIFRELHDTVSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTAD 346 (459)
Q Consensus 267 ~~~~~~~~~~~~N~~Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~ 346 (459)
...+..++.+|+.+++..|.+++|.+++++|+.|.+ ++.+.+.++. .+...|.+|+.++.++|...|+++.
T Consensus 138 --F~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~-~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~pG~----- 208 (384)
T PRK09330 138 --FSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLE-VVDKKTPLLD-AFKAADDVLRQAVQGITDLITKPGL----- 208 (384)
T ss_pred --ccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHh-hccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhcCCc-----
Confidence 245667889999999999999999999999999976 5555444432 5567899999999999999998743
Q ss_pred CCCCCCCcChHHHhhhccCCCc
Q 040160 347 SFDVSGAVDFNGFVQMLAGQAR 368 (459)
Q Consensus 347 ~~~~~~~~~l~~l~~~L~~~~r 368 (459)
.+++..++.+.|...+.
T Consensus 209 -----iNvDfaDvk~vm~~~G~ 225 (384)
T PRK09330 209 -----INLDFADVKTVMSEMGL 225 (384)
T ss_pred -----ccCCHHHHHHHHhcCCe
Confidence 67899999998875443
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=93.97 E-value=0.15 Score=52.10 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=91.4
Q ss_pred hhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHHHHHHcCCCCeeEEEecCCCccccccchhhhHHHHhhhh
Q 040160 203 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFSVRSPSSQMNLRSRKQTIFRELHDT 281 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~L~DEYpk~~i~~~~v~p~~~~~~~~~~~~~~~~~~N~~ 281 (459)
.++..+.|+..++.-| =+.++..++||| +|.+-.+.+.++ || +.......+.|.. .+-..+.-|+.
T Consensus 82 Aee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiak-e~-g~ltvavvt~Pf~--------~EG~~r~~~A~ 148 (338)
T COG0206 82 AEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAK-EL-GALTVAVVTLPFS--------FEGSPRMENAE 148 (338)
T ss_pred HHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHH-hc-CCcEEEEEEecch--------hcCchHHHHHH
Confidence 6677777887777777 566778899999 665555555554 44 4555666667765 23335678899
Q ss_pred hhhhhhcccccEEEEecCCccCcccccccccCCCCCcchHHHHHHHHHhhcccCcccCCCCCCCCCCCCCCCcChHHHhh
Q 040160 282 VSFSRLASFSKLIVPVGLPFLSESKASTFLRIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVSGAVDFNGFVQ 361 (459)
Q Consensus 282 Lsl~~L~e~sdl~~pl~n~~l~~~~~~~~l~~~~~~~~~~saliA~~l~t~T~p~R~~~~g~~~~~~~~~~~~~l~~l~~ 361 (459)
-.+..|.+++|-++.++|+.|.+ ... ...+ ..-+--.+.+++..+..++--.-.+ +- .+++..++.+
T Consensus 149 ~gi~~L~~~~DtlIvi~Ndkll~-~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~--gl--------invDfaDv~~ 215 (338)
T COG0206 149 EGIEELREVVDTLIVIPNDKLLK-GKD-KTPI-AEAFNEADDVLGNAVKGITELITKP--GL--------VNVDFADVRT 215 (338)
T ss_pred HHHHHHHHhCCcEEEEecHHHHh-ccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccC--ce--------EeecHHHHHH
Confidence 99999999999999999987754 211 1000 0012224666776666665443222 21 4688888888
Q ss_pred hccCCCch
Q 040160 362 MLAGQARQ 369 (459)
Q Consensus 362 ~L~~~~r~ 369 (459)
-|...+..
T Consensus 216 vm~~~G~A 223 (338)
T COG0206 216 VMKGGGFA 223 (338)
T ss_pred HHhcCCce
Confidence 88775554
No 31
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=74.81 E-value=2.5 Score=37.04 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=32.9
Q ss_pred hhhHHHHhhhhhhccCCCcceEEEecCCCCCCcchHHHHHHHHHH
Q 040160 203 GEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADE 247 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGfSGl~s~lle~L~DE 247 (459)
.+...++|+..++++|. .|+.+|+|+ ||+-==....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC
Confidence 56788999999999999 999999999 77622234455666545
No 32
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=74.16 E-value=3.7 Score=35.04 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=29.2
Q ss_pred hhhHHHHhhhhhhccCCCcceEEEecCCCCC
Q 040160 203 GEEICERLRFFVEESDHIQGFQFVVDDSGGF 233 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf 233 (459)
.+++.++|++.+++-+.-+|+.+++|+.||+
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGS 70 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCc
Confidence 6889999999999999999999999999997
No 33
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=70.56 E-value=10 Score=32.58 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=28.7
Q ss_pred hhhHHHHhhhhhhccCCCcceEEEecCCCCC
Q 040160 203 GEEICERLRFFVEESDHIQGFQFVVDDSGGF 233 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf 233 (459)
.+++.++|++.+++.+.-+|+.+++|+-||+
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 6789999999999999889999999999998
No 34
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=70.16 E-value=6.2 Score=33.87 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=31.0
Q ss_pred hhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchH
Q 040160 203 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAA 238 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s 238 (459)
.|++.++++..+++.+.=+|+.+++|+-||+ .=.++
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~ 77 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAA 77 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 6789999999999988889999999999999 54443
No 35
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=66.50 E-value=4.1 Score=42.48 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=51.5
Q ss_pred cccccccccccCCcc------cccCCccCCC---------------CCCCcccccccccccCcchhhHHHHhhhhhhccC
Q 040160 160 FWTDFSKVHYHPQSL------YELGGLWMDP---------------QDFDNYGIGKDAFSEGFRGEEICERLRFFVEESD 218 (459)
Q Consensus 160 ~WsDf~~~~~hPrS~------~~l~~~~~~~---------------~~f~~y~~G~~~~~~~~~~e~~~d~IR~~vEeCD 218 (459)
.|.+|.+-||+||+| .+|++..++. ..-++|..|...+ -.+..++...+.-.+.+
T Consensus 19 ~w~~~~~eh~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gaGnn~a~G~~~~----g~~~~~~~~d~ir~~~E 94 (379)
T cd02190 19 FWDLALREHLKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQY----GHQYIDSILEKIRKAAE 94 (379)
T ss_pred HHHHHHHhhcCCcceeccCChhHHHHHhcCccccccCcccccccCCCCCCCccceeecc----chhHHHHHHHHHHHHHh
Confidence 899999999999999 4454433210 1122233332211 03334444555566677
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHHHHHc
Q 040160 219 HIQGFQFVVDDSGGFSAVAADLLENIADEY 248 (459)
Q Consensus 219 ~lQGFqi~~d~~gGfSGl~s~lle~L~DEY 248 (459)
..+.+|-+.=+.+--||.||.+-..|.+..
T Consensus 95 ~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l 124 (379)
T cd02190 95 KCDSLQSFFILHSLGGGTGSGLGTYVLELL 124 (379)
T ss_pred hCcCcceEEEEeecCCCcchhHHHHHHHHH
Confidence 777777777777666777777777776654
No 36
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=60.43 E-value=0.81 Score=39.88 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=38.4
Q ss_pred CchhhhhhhcccccCCCCCCCCch----HhhhccCCCCCCC-----CcccccchhhhhheeecccccCCCCccCHHHHHH
Q 040160 367 ARQNTVVILDAAMPAPALNGKQHE----QSLLGNLQPLTPE-----VSEDVEDLQAVESMIIHGALRSDGQRASISEVKE 437 (459)
Q Consensus 367 ~r~n~~~~~~~~~P~~~~~~~~~~----~~l~~~l~~ltp~-----~~~~~~~~~~~~s~~~rG~~~~~~~~~~~~~~~~ 437 (459)
||.||+.... .|+......... ..+.+.+ |.|. |++ ..++|++.++.+||.. +..||.+
T Consensus 1 PrlHFl~~s~--aP~~~~~~~~~~~~s~~~l~~~l--f~~~n~m~~~~~-~~gkyla~~~l~RG~v-------~~~di~~ 68 (126)
T PF03953_consen 1 PRLHFLLSSY--APLTSPEDSNYEKLSVQDLTRQL--FDPKNQMVSCDP-RQGKYLACALLYRGDV-------SPKDINE 68 (126)
T ss_dssp TTT-EEEEEE--SSTSBTTSTTSSCCTHHHHHHHH--TSGGGBSSSS-T-TSS-EEEEEEEEEESS-------THHHHHH
T ss_pred CCeeeecCcc--ccccccchhhhhcccHhHhhHHH--Hhhhhhcccccc-ccchhhhhhhcccccc-------ccchhhh
Confidence 5667766555 466554332222 2233333 4444 333 3599999999999964 5778888
Q ss_pred HHHHHhcc
Q 040160 438 TVNAIYGH 445 (459)
Q Consensus 438 ~~~~~~~~ 445 (459)
++...-.+
T Consensus 69 ~i~~ik~~ 76 (126)
T PF03953_consen 69 AIAKIKQK 76 (126)
T ss_dssp HHHHHHCT
T ss_pred HHHhhhhc
Confidence 88765433
No 37
>PF13809 Tubulin_2: Tubulin like
Probab=55.27 E-value=29 Score=35.64 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=33.0
Q ss_pred eEEEecCCCCC-CcchHHHHHHHHHHc-----CCCCeeEEEecCCC
Q 040160 223 FQFVVDDSGGF-SAVAADLLENIADEY-----ANTPVLLFSVRSPS 262 (459)
Q Consensus 223 Fqi~~d~~gGf-SGl~s~lle~L~DEY-----pk~~i~~~~v~p~~ 262 (459)
+.|+.+++||| ||+--.++-.|++.+ ....+..|.+.|..
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~ 195 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDA 195 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcc
Confidence 67778999999 999999999999987 23457788888874
No 38
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=47.54 E-value=18 Score=31.57 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=26.0
Q ss_pred hhhHHHHhhhhhhccCC-CcceEEEecCCCCC
Q 040160 203 GEEICERLRFFVEESDH-IQGFQFVVDDSGGF 233 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~-lQGFqi~~d~~gGf 233 (459)
.+.+.++|++.+|+++. =+|+.+++|+ ||+
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 56788999999999976 8999999999 664
No 39
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=44.85 E-value=44 Score=34.09 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=30.8
Q ss_pred hhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchH
Q 040160 203 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAA 238 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s 238 (459)
.+++.++++..+++.+.=.|+.+++|+-||+ .=.+.
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N~a~ 78 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAAS 78 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 6889999999999998889999999999998 44333
No 40
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=30.16 E-value=51 Score=29.10 Aligned_cols=25 Identities=8% Similarity=0.376 Sum_probs=21.3
Q ss_pred CcchHHHHHHHHHHcCC-CCeeEEEe
Q 040160 234 SAVAADLLENIADEYAN-TPVLLFSV 258 (459)
Q Consensus 234 SGl~s~lle~L~DEYpk-~~i~~~~v 258 (459)
+|+|..+++.|+.++|. ..++..+.
T Consensus 10 GGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 10 GGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred ChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 89999999999999998 66666653
No 41
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=26.65 E-value=95 Score=27.83 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=29.7
Q ss_pred hhhHHHHhhhhhhccCCCcceEEEecCCCCC-CcchHHHHHH
Q 040160 203 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLEN 243 (459)
Q Consensus 203 ~e~~~d~IR~~vEeCD~lQGFqi~~d~~gGf-SGl~s~lle~ 243 (459)
.+.+.+.+...++.=|+=.|+.+++|+-||+ .=.++.++..
T Consensus 42 ~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~~~ 83 (143)
T COG2893 42 EDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLAME 83 (143)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHHhh
Confidence 4445555666666666679999999999999 7766666643
No 42
>PF11307 DUF3109: Protein of unknown function (DUF3109); InterPro: IPR021458 This bacterial family of proteins has no known function.
Probab=26.01 E-value=44 Score=31.21 Aligned_cols=20 Identities=25% Similarity=0.580 Sum_probs=15.6
Q ss_pred HHHHHHHhccCCc---CCcceee
Q 040160 436 KETVNAIYGHAIT---RPMFCHL 455 (459)
Q Consensus 436 ~~~~~~~~~~~~~---~~~~~~~ 455 (459)
+=|+.+||+.-.+ ||..|||
T Consensus 102 ~CaiE~Ay~~G~~~~~KPISChL 124 (183)
T PF11307_consen 102 LCAIEKAYREGKIDFKKPISCHL 124 (183)
T ss_pred EEHHHHHHHcCCCCCCCCceEee
Confidence 3467778877666 9999998
No 43
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=24.17 E-value=1.8e+02 Score=24.34 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=42.4
Q ss_pred hhHHHHhhhhhhccCCCcceEEEecCCCCCCcc-----h---HHHHHHHHHHcCCCCeeEEE
Q 040160 204 EEICERLRFFVEESDHIQGFQFVVDDSGGFSAV-----A---ADLLENIADEYANTPVLLFS 257 (459)
Q Consensus 204 e~~~d~IR~~vEeCD~lQGFqi~~d~~gGfSGl-----~---s~lle~L~DEYpk~~i~~~~ 257 (459)
..+-+-|+.+++..+-..|-.++.+.++.+.++ + -..++.|...||++..+..+
T Consensus 10 wnly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIG 71 (100)
T PF09949_consen 10 WNLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIG 71 (100)
T ss_pred HHHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEe
Confidence 356788999999999999999999986654332 2 24678999999998887776
No 44
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=21.41 E-value=1.3e+02 Score=30.36 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=30.7
Q ss_pred ceEEEecCCCCCCcchHHHHHHHHHHcCCCCeeEEEe
Q 040160 222 GFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFSV 258 (459)
Q Consensus 222 GFqi~~d~~gGfSGl~s~lle~L~DEYpk~~i~~~~v 258 (459)
|+.++..-+.=++|+|+.+.|.|.+++| +++--.++
T Consensus 245 ~~IvT~EeHsi~GGlGsaVAEvlse~~p-~~~~riGv 280 (312)
T COG3958 245 GRIVTAEEHSIIGGLGSAVAEVLSENGP-TPMRRIGV 280 (312)
T ss_pred CcEEEEecceeecchhHHHHHHHHhcCC-cceEEecC
Confidence 8889988888889999999999999999 66655555
Done!