Your job contains 1 sequence.
>040162
MAGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQI
MLGMVKPPQVIPSVQPPALQHPQQSAPQLQQPNFQATQASSGQVGLQDQTSASQTQTSIR
KQHQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMP
PISHHSASQPPSLHQPQMPAASSQLQPPLQSTGPPHMPLQPPLPQQPRPASMQSFHQYAP
HVGSTVGFQHPAAQQRSSQPMYHSGPNPPASIGPSFQQGQPPVPSQPLPQSVYQAGGSRL
GSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEME
QALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040162
(395 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2027829 - symbol:ESP1 "AT1G73840" species:3702... 764 8.1e-76 1
TAIR|locus:2013016 - symbol:CSTF64 "cleavage stimulating ... 154 1.1e-21 3
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 133 4.6e-16 3
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 123 6.9e-13 3
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 121 8.6e-13 2
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 123 1.1e-12 3
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac... 123 9.0e-12 3
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 123 1.0e-11 3
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 121 2.7e-11 2
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac... 123 2.8e-11 2
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 120 5.6e-11 3
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 121 6.4e-11 2
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 123 6.8e-11 2
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact... 123 6.9e-11 2
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 123 8.6e-11 2
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac... 123 9.4e-11 2
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 121 1.1e-10 2
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 123 1.4e-10 2
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 123 1.4e-10 2
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 121 1.4e-10 3
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 123 1.5e-10 2
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 123 1.6e-10 2
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 123 1.7e-10 2
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 121 1.8e-10 2
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p... 123 1.9e-10 2
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 121 4.4e-10 2
ASPGD|ASPL0000005213 - symbol:AN6074 species:162425 "Emer... 103 6.5e-09 2
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 94 1.8e-08 3
POMBASE|SPBC3B9.11c - symbol:ctf1 "mRNA cleavage and poly... 102 3.8e-07 2
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 123 2.6e-06 2
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 123 1.4e-05 2
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 94 1.9e-05 2
DICTYBASE|DDB_G0280529 - symbol:cstf2 "cleavage stimulati... 97 4.0e-05 4
POMBASE|SPAC644.16 - symbol:SPAC644.16 "RNA-binding prote... 89 5.5e-05 2
ZFIN|ZDB-GENE-030131-5794 - symbol:snapc4 "small nuclear ... 94 0.00013 3
UNIPROTKB|I3L8Y8 - symbol:ATN1 "Uncharacterized protein" ... 108 0.00036 2
UNIPROTKB|J9JIM4 - symbol:AMEL "Amelogenin" species:9823 ... 106 0.00070 1
UNIPROTKB|J9P5D1 - symbol:MED15 "Uncharacterized protein"... 90 0.00073 3
ZFIN|ZDB-GENE-030131-4497 - symbol:si:ch211-87l2.1 "si:ch... 83 0.00080 2
UNIPROTKB|Q99217 - symbol:AMELX "Amelogenin, X isoform" s... 107 0.00084 1
>TAIR|locus:2027829 [details] [associations]
symbol:ESP1 "AT1G73840" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0035194 "posttranscriptional gene silencing by RNA"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006470 "protein dephosphorylation" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006396 GO:GO:0035194
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:AY070424 EMBL:AY096602 IPI:IPI00548325 RefSeq:NP_177525.2
UniGene:At.27548 ProteinModelPortal:Q8VYM7 PaxDb:Q8VYM7
PRIDE:Q8VYM7 EnsemblPlants:AT1G73840.1 GeneID:843720
KEGG:ath:AT1G73840 TAIR:At1g73840 eggNOG:NOG274949
HOGENOM:HOG000084101 InParanoid:Q8VYM7 OMA:VHEPANT PhylomeDB:Q8VYM7
ProtClustDB:CLSN2690493 ArrayExpress:Q8VYM7 Genevestigator:Q8VYM7
Uniprot:Q8VYM7
Length = 388
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 198/410 (48%), Positives = 235/410 (57%)
Query: 1 MAGKQVAGDG-LPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQ 59
MAGKQ+ GDG LPANLAGM+K+QLY+IM+QMK+LI+QN QQAR+ILI+NPLLTKALFQAQ
Sbjct: 1 MAGKQIGGDGGLPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQ 60
Query: 60 IMLGMVKPPQVIPSVXXXXXXXXXXXXXXXXXX-NFQATQAS-SGQVGLQDXXXXXXXXX 117
IMLGMV+PPQV P V N QA +S G + +
Sbjct: 61 IMLGMVQPPQVTPKVEPQAVQQPQQSHQSIPPKPNVQAHMSSFQGGGSVHEPANTMQPQA 120
Query: 118 XIRKQHQNQPA-MPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQ- 175
IRK QP MP S+ A + QSQP SH PQ+ +G N +T+MS PQ SQ
Sbjct: 121 PIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSH----PQR-QGHLNPAVTSMSHPQSSQV 175
Query: 176 HSSMPPISHHSASQPPSLHQPQMPAASSQLQP-PLQSTGXXXXXXXXXXXXXXXXASMQS 234
++ PP SHH SQ P H +PA+S+QLQ P+ S G S
Sbjct: 176 QNAPPPASHHPTSQQPPFHHLDIPASSTQLQQQPMHSGGGPHVAQQQ---------SRPY 226
Query: 235 FHQYAP-HVGSTVGFQHPAAQ-QRSSQPMYHSGPNPPASIGXXXXXXXXXXXXXXXXXXX 292
HQY G GFQH A Q SQPMYHSG PPAS G
Sbjct: 227 HHQYGQAQTGPNTGFQHHGAPTQHLSQPMYHSGNRPPASGGPQFPQGQPHLPSQPTYQ-- 284
Query: 293 XXAGGSRLGSDFNN-QIGNSMQIDRG-SWMSGPPENPAFTQLSG----PPPAVSGQMGPG 346
GG + D+NN Q+ M DRG SWM+G E+ T L G PPP+ Q+GPG
Sbjct: 285 ---GGGQYRGDYNNNQLAGLMAQDRGPSWMAGQSESSNITHLPGLGPVPPPS---QVGPG 338
Query: 347 N-QPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
PPRP+ +S EME+ALLQQVMSL+PEQI+LLPPEQRNQVLQLQQILRQ
Sbjct: 339 GGPPPRPAPISAEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQILRQ 388
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 154 (59.3 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A D L +LA MS++QL EI++ +K + QN++ ARQ+L+ P L KA+F AQ+MLG+V
Sbjct: 163 ASDPLALHLAKMSRSQLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVS 222
Query: 67 PPQVIPS 73
P QV+ S
Sbjct: 223 P-QVLQS 228
Score = 150 (57.9 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 42/104 (40%), Positives = 60/104 (57%)
Query: 296 GGSRLGSDFNNQIGNS---MQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRP 352
GG + +F +I ++R S M E+ T L G VS M P NQ P
Sbjct: 355 GGQTVSLNFGKRINEGPPHQSMNRPSKMM-KVEDRRTTSLPGGH--VSNSMLP-NQAQAP 410
Query: 353 SS-LSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
+ +SP+++ LLQQVM+L+PEQ+ LL PEQ+ +VL+LQQ L+Q
Sbjct: 411 QTHISPDVQSTLLQQVMNLTPEQLRLLTPEQQQEVLKLQQALKQ 454
Score = 56 (24.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/87 (28%), Positives = 36/87 (41%)
Query: 131 ISSASLPAANLQSQPMHSHALQVPQ-QLKGRPNAPLTTMSLPQPSQHSSMPPISHH---S 186
+S L + N+ P H + QL G+ P L Q SQ S P S +
Sbjct: 221 VSPQVLQSPNIVQAPSHMTGSSIQDAQLSGQNLLP----PLAQRSQQLSRAPHSQYPVQQ 276
Query: 187 ASQPPSLHQPQMPA--ASSQLQPPLQS 211
+S+ P PQ+ A S + PP +S
Sbjct: 277 SSKQPFSQIPQLVAQPGPSSVNPPPRS 303
Score = 45 (20.9 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 137 PAANLQSQPMHSHALQVP-QQLKGRPNAPLTTMSLPQPSQHS-SMPPISHHSASQPPSLH 194
P A Q + Q P QQ +P + + + + QP S + PP S P
Sbjct: 256 PLAQRSQQLSRAPHSQYPVQQSSKQPFSQIPQL-VAQPGPSSVNPPPRSQVKVENAPFQR 314
Query: 195 QPQMPAASS 203
Q +PA+++
Sbjct: 315 QQVVPASTN 323
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 133 (51.9 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 314 IDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPP-RP---SSLSPEMEQ--ALLQQV 367
+D ++GP P + GPPP G MGPG PP RP S +S + + AL+ QV
Sbjct: 400 VDARGPIAGP-RGPVAGGMQGPPP--HG-MGPGAPPPARPGPGSDVSSQDHEKAALIMQV 455
Query: 368 MSLSPEQISLLPPEQRNQVLQLQQILRQ 395
+ L+PEQI++LP EQR +L L++ +++
Sbjct: 456 LQLTPEQIAMLPAEQRQSILILKEQIQK 483
Score = 123 (48.4 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 132 APESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 191
Query: 67 P 67
P
Sbjct: 192 P 192
Score = 54 (24.1 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
Identities = 22/70 (31%), Positives = 28/70 (40%)
Query: 146 MHSHALQVPQQLKGRPNA-PLTTMSLPQPSQHSSMPPISHHSASQP-PSLHQPQMPAASS 203
+H A+ P +P A P LPQP+ S P QP P LH + A
Sbjct: 199 LHRPAVVPPINPSPQPGAVPAPNQPLPQPNVPVSQP--------QPMPGLH---VNGAPQ 247
Query: 204 QLQPPLQSTG 213
+QPP G
Sbjct: 248 MMQPPQMGGG 257
Score = 48 (22.0 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 17/56 (30%), Positives = 20/56 (35%)
Query: 309 GNSMQIDRGSWMS--GPP-----ENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSP 357
G M RG M GPP +P GP G + G Q P P + P
Sbjct: 372 GPMMGEPRGPMMEQRGPPIEARGRDPRAVDARGPIAGPRGPVAGGMQGPPPHGMGP 427
Score = 48 (22.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 21/91 (23%), Positives = 37/91 (40%)
Query: 126 QPAMPISSASLPAANLQSQ-PMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISH 184
Q + + ++ A N+ Q P ++AL Q + + + L +P+ + P
Sbjct: 154 QMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKMLHRPAVVPPINPSPQ 213
Query: 185 HSASQPPS--LHQPQMPAASSQLQPPLQSTG 213
A P+ L QP +P + Q P L G
Sbjct: 214 PGAVPAPNQPLPQPNVPVSQPQPMPGLHVNG 244
Score = 45 (20.9 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 316 RGSWMSGPPENPAFTQLSGPPPAVSGQ 342
RG M G P P Q GPP G+
Sbjct: 370 RGGPMMGEPRGPMMEQ-RGPPIEARGR 395
Score = 37 (18.1 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 322 GPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEME 360
GPP + A + GP G M + P P +E
Sbjct: 353 GPPMHMAPPDMRGPHDMRGGPMMGEPRGPMMEQRGPPIE 391
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 123 (48.4 bits), Expect = 6.9e-13, Sum P(3) = 6.9e-13
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 110 (43.8 bits), Expect = 6.9e-13, Sum P(3) = 6.9e-13
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 322 GPPENP----AFTQLSGPPPA-VSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQ 374
GP + P A Q G P A V G PG P S ++P+ + AL+ QV+ L+ +Q
Sbjct: 390 GPRQVPNMAGAGMQGGGIPGAGVQGAGQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQ 449
Query: 375 ISLLPPEQRNQVLQLQQILRQ 395
I++LPPEQR +L L++ +++
Sbjct: 450 IAMLPPEQRQSILILKEQIQK 470
Score = 49 (22.3 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
Identities = 25/84 (29%), Positives = 34/84 (40%)
Query: 322 GP-PENPAFTQLSGPPPAVSGQMGPGNQPPR--PSSLSPEMEQ-----ALLQ---QVMSL 370
GP P P + GP P G GP Q PR P+ M+ A +Q Q
Sbjct: 364 GPNPRGPMAGGIQGPGPLNMGASGP--QGPRQVPNMAGAGMQGGGIPGAGVQGAGQPGGF 421
Query: 371 SPEQISLLPPEQRNQVLQLQQILR 394
SP Q + P + L + Q+L+
Sbjct: 422 SPGQSQVTPQDHEKAAL-IMQVLQ 444
Score = 47 (21.6 bits), Expect = 6.9e-13, Sum P(3) = 6.9e-13
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 171 PQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQ 210
P P ++ + P + +SQP + + A +QPP+Q
Sbjct: 217 PGPGPNAQLNP-QNTPSSQPQPIGGMHVNGAPPLMQPPMQ 255
Score = 46 (21.3 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSP 372
GP P GQ+G + P L P + + + L P
Sbjct: 292 GPVPLERGQVGRDPRGLEPRGLEPRGLEPRVMEARGLEP 330
Score = 43 (20.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 334 GPPPAVSGQMGPGNQP---PRP 352
GP P + Q+ P N P P+P
Sbjct: 216 GPGPGPNAQLNPQNTPSSQPQP 237
Score = 42 (19.8 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 317 GSWMSGPPENPAFTQ-LSGPPPAVSGQMGPGNQPPRPSSLSP 357
G ++G P P + G PA GQM Q P P ++P
Sbjct: 240 GMHVNGAP--PLMQPPMQGGVPA-PGQMAAAVQGPGPGPMAP 278
Score = 40 (19.1 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 362 GPGPNPRGPMAGGIQGPGPLNM 383
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 121 (47.7 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ ++
Sbjct: 128 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARSMLLQNPQLAYALLQAQVVMRIMD 187
Query: 67 P 67
P
Sbjct: 188 P 188
Score = 120 (47.3 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 35/94 (37%), Positives = 49/94 (52%)
Query: 316 RGSWMSGPPENPA----FTQ-LSGPPPAVSGQMGPGNQPPRPSSLSPEMEQ--------- 361
RG M GP P T + GP P G GP P +PSS SP Q
Sbjct: 338 RGMEMRGPGPGPGSRGPMTGGIQGPGPINMGAGGPQG-PRQPSSFSPGQSQVTPQDQEKA 396
Query: 362 ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 397 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 430
Score = 42 (19.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 322 GPPENPAFTQLSGP-PPAVSGQMGPGNQPPR 351
GP E Q++ P P G M G PPR
Sbjct: 229 GPLERGQ-VQMADPRAPLPRGPMAAGGLPPR 258
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 123 (48.4 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 110 (43.8 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 323 PPENPAFTQLSG---PPPAVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISL 377
P N A + G P V G PG P S ++P+ + AL+ QV+ L+ +QI++
Sbjct: 511 PVPNMAGAGMQGGGIPGAGVQGAGQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAM 570
Query: 378 LPPEQRNQVLQLQQILRQ 395
LPPEQR +L L++ +++
Sbjct: 571 LPPEQRQSILILKEQIQK 588
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 24/100 (24%), Positives = 35/100 (35%)
Query: 171 PQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGXXXXXXXXXXXXXXXXA 230
P P ++ + P + +SQP + + A +QPP+Q G
Sbjct: 217 PGPGPNAQLNP-QNTPSSQPQPIGGMHVNGAPPLMQPPMQG-GVPAPGQMAAAVQGPGPG 274
Query: 231 SMQSFHQYAPHVGSTVGFQHPAAQQRSSQPMYHSGPNPPA 270
M P VG G P +R PM P+P A
Sbjct: 275 PMAPGGGLQPQVGMPGG--GPVPLERGQVPM----PDPRA 308
Score = 48 (22.0 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 322 GP-PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSL 355
GP P P + GP P G GP Q PR L
Sbjct: 463 GPNPRGPMAGGIQGPGPLNMGASGP--QGPRQVQL 495
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 334 GPPPAVSGQMGPGNQP---PRP 352
GP P + Q+ P N P P+P
Sbjct: 216 GPGPGPNAQLNPQNTPSSQPQP 237
Score = 42 (19.8 bits), Expect = 5.6e-12, Sum P(3) = 5.6e-12
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 123 HQNQPA--MPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPL 165
HQ P MP + P ++ PM P+ L G P PL
Sbjct: 355 HQGAPMHHMPGHDSRGPPHEMRGGPMGE-----PRPLMGEPRGPL 394
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 317 GSWMSGPPENPAFTQ-LSGPPPAVSGQMGPGNQPPRPSSLSP 357
G ++G P P + G PA GQM Q P P ++P
Sbjct: 240 GMHVNGAP--PLMQPPMQGGVPA-PGQMAAAVQGPGPGPMAP 278
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 461 GPGPNPRGPMAGGIQGPGPLNM 482
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 123 (48.4 bits), Expect = 9.0e-12, Sum P(3) = 9.0e-12
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 100 (40.3 bits), Expect = 9.0e-12, Sum P(3) = 9.0e-12
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 338 AVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
++ G PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 528 SIQGGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 587
Score = 63 (27.2 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMSLSPEQISLLPP 380
P P + + GP P G +GP P M+ A +Q Q SP Q + P
Sbjct: 489 PRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQGGGQPGGFSPGQNQVTPQ 548
Query: 381 EQRNQVLQLQQILR 394
+ L + Q+L+
Sbjct: 549 DHEKAAL-IMQVLQ 561
Score = 50 (22.7 bits), Expect = 9.0e-12, Sum P(3) = 9.0e-12
Identities = 35/136 (25%), Positives = 50/136 (36%)
Query: 233 QSFHQYAPHVGSTVGF--QHPAAQQRSSQPMYHSGPNPP---ASI--GXXXXXXXXXXXX 285
Q+ H P GS+V Q+P Q + H PP AS+ G
Sbjct: 206 QTVHSAGPGSGSSVSMNQQNPQTPQAQTLSGMHVNGAPPLMQASLQAGVAAPGQIPATVT 265
Query: 286 XXXXXXXXXAGG--SRLGSDFNNQIGNSMQIDRGSWMSGP--PENPAFTQLSGPP---PA 338
AGG +++G + + SM+ +G+ P P PA + P P
Sbjct: 266 GPGPGSLAPAGGMQAQVGMPGSGPV--SMERGQGTVQHSPVGPTGPASIERVQVPMQDPR 323
Query: 339 VSGQMGP--GNQP-PR 351
+ Q GP N P PR
Sbjct: 324 AAMQRGPLPANVPTPR 339
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 484 GPVPGPRGPMPSGIQGPSPINM 505
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 123 (48.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 108 (43.1 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 335 PPPAVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQI 392
P V G PG P S ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L++
Sbjct: 541 PGAGVQGAGQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQ 600
Query: 393 LRQ 395
+++
Sbjct: 601 IQK 603
Score = 50 (22.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 42/216 (19%), Positives = 66/216 (30%)
Query: 171 PQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQSTGXXXXXXXXXXXXXXXXA 230
P P ++ + P + +SQP + + A +QPP+Q G
Sbjct: 217 PGPGPNAQLNP-QNTPSSQPQPIGGMHVNGAPPLMQPPMQG-GVPAPGQMAAAVQGPGPG 274
Query: 231 SMQSFHQYAPHVGSTVGF-------QHPAAQQRSSQ---PMYHSGPNPPASIGXXXXXXX 280
M P VG G Q P R+ P+ SGP P +G
Sbjct: 275 PMAPGGGLQPQVGMPGGGPVPLERGQVPMPDPRAPMQRGPLPASGPPPRGLLGDAPNDPR 334
Query: 281 XXXXXXXXXXXXXXA--GGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPP-- 336
G G+ ++ G+ + GP P L G P
Sbjct: 335 GGTLLSVTGDVEPRGYLGPPHQGAPMHHMPGHDSRGPPHEMRGGPMGEPR--PLMGEPRG 392
Query: 337 PAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSP 372
P + ++G + P L P + + + L P
Sbjct: 393 PLMDARVGRDPRGLEPRGLEPRGLEPRVMEARGLEP 428
Score = 48 (22.0 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 322 GP-PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSL 355
GP P P + GP P G GP Q PR L
Sbjct: 462 GPNPRGPMAGGIQGPGPLNMGASGP--QGPRQVQL 494
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 334 GPPPAVSGQMGPGNQP---PRP 352
GP P + Q+ P N P P+P
Sbjct: 216 GPGPGPNAQLNPQNTPSSQPQP 237
Score = 42 (19.8 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 123 HQNQPA--MPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPL 165
HQ P MP + P ++ PM P+ L G P PL
Sbjct: 355 HQGAPMHHMPGHDSRGPPHEMRGGPMGE-----PRPLMGEPRGPL 394
Score = 40 (19.1 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 460 GPGPNPRGPMAGGIQGPGPLNM 481
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 121 (47.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ ++
Sbjct: 124 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 110 (43.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 316 RGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQP----PRPSSLSPEMEQ--ALLQQVMS 369
+G+ M G A Q GP +G+ G G QP P S ++P+ ++ AL+ QV+
Sbjct: 545 QGAGMQGAGMQGAGMQ--GPGMQGAGKQG-GGQPSSFSPGQSQVTPQDQEKAALIMQVLQ 601
Query: 370 LSPEQISLLPPEQRNQVLQLQQILRQ 395
L+ +QI++LPPEQR +L L++ +++
Sbjct: 602 LTADQIAMLPPEQRQSILILKEQIQK 627
Score = 48 (22.0 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 331 QLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLS 371
++ GP P+ G M G Q P P ++ Q +QV S+S
Sbjct: 451 EMRGPGPSSRGPMTGGIQGPGPINMGAGGPQGP-RQVPSIS 490
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 323 PPENPAFTQLSGPPPAV-SGQMGPGNQPPRPSSLSPEMEQALLQQV---MSLSPEQISLL 378
PP+ P + GP P G M P P + E Q + M P L
Sbjct: 257 PPQGPMPAAVPGPGPLTPGGTMQPQVGMPGVGPVPLERGQVQISDPRAPMPRGPMTAGGL 316
Query: 379 PP 380
PP
Sbjct: 317 PP 318
Score = 40 (19.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 322 GPPENPAFTQLSGPPPAV--SGQMGPGNQ 348
GP + P+ + + P P + +G G G Q
Sbjct: 482 GPRQVPSISGVGNPGPGMQGAGMQGGGMQ 510
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 123 (48.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 108 (43.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 320 MSGPPENPAFTQLSGPPPA-VSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQIS 376
+SG F Q +G A + G PG P + ++P+ + AL+ QV+ L+ +QI+
Sbjct: 561 VSGQSVQSCFMQGAGMQGASIQGGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIA 620
Query: 377 LLPPEQRNQVLQLQQILRQ 395
+LPPEQR +L L++ +++
Sbjct: 621 MLPPEQRQSILILKEQIQK 639
Score = 47 (21.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 31/134 (23%), Positives = 45/134 (33%)
Query: 233 QSFHQYAPHVGSTVGF--QHPAAQQRSSQPMYHSGPNPP---ASI--GXXXXXXXXXXXX 285
Q+ H P GS+V Q+P Q + H PP AS+ G
Sbjct: 206 QTVHSAGPGSGSSVSMNQQNPQTPQAQTLSGMHVNGAPPLMQASLQAGVAAPGQIPATVT 265
Query: 286 XXXXXXXXXAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPA----VSG 341
AGG + + + ++RG P ++P GP PA G
Sbjct: 266 GPGPGSLAPAGGMQ--AQVGMPGSGPVSMERGQV---PMQDPRAAMQRGPLPANVPTPRG 320
Query: 342 QMGPGNQPPRPSSL 355
+G PR +L
Sbjct: 321 LLGDAPNDPRGGTL 334
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 324 PENPAFTQLSGPPPAVSGQMGP-GNQ--PPRPSSLSPEMEQALLQQVMS 369
P P + + GP P G +GP G++ P +S+ Q+V+S
Sbjct: 471 PRGPMPSGIQGPSPINMGAVGPQGSRQCPTISNSIQNRAPDFKGQRVLS 519
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 466 GPVPGPRGPMPSGIQGPSPINM 487
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 120 (47.3 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 15 LAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVI 71
+A + Q+YE+M QMK I N +ARQ+L+ NP L AL QA +++ +V P Q +
Sbjct: 131 VASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQAL 187
Score = 90 (36.7 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 322 GPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPE 381
G P+ P TQ A Q G PS S + + AL+ QV+ LS EQI+ LP E
Sbjct: 343 GIPQAPPPTQQQ-QAAAQQLQSRLGAHGVLPSDASDQEKAALIMQVLQLSDEQIAQLPSE 401
Query: 382 QRNQVLQLQQ 391
QR ++ L++
Sbjct: 402 QRVSIVMLKE 411
Score = 50 (22.7 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 157 LKGRPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLH 194
+ G+ P + +PQ Q + PP+ P ++H
Sbjct: 213 MMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVH 250
Score = 50 (22.7 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
Identities = 25/105 (23%), Positives = 40/105 (38%)
Query: 120 RKQHQNQPAMPISSASLPAA----NLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQ 175
++Q QP MP+ PA ++ + + + + ++ GR SLP P
Sbjct: 229 QQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPMDPRMMGRGMDQDLRASLPNPVP 288
Query: 176 HSSMPPISHHSASQPPSLHQ--PQMPAA-------SSQLQPPLQS 211
M P + A PP Q PQ P A + P L++
Sbjct: 289 PPLMDPRAR--AQMPPQQQQGVPQAPPAPYPSDPRQRPMDPRLRA 331
Score = 49 (22.3 bits), Expect = 7.1e-11, Sum P(3) = 7.1e-11
Identities = 21/63 (33%), Positives = 25/63 (39%)
Query: 142 QSQPMHSHALQVPQQLKGRPN-AP--LTTMSLPQPSQHSSMPPISHHSASQPPS-LHQPQ 197
Q+ M A Q+P L G P+ P T M Q Q P A QPP + P
Sbjct: 185 QALGMLFKANQMPPVLGGNPHQGPGNHTMMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPG 244
Query: 198 MPA 200
PA
Sbjct: 245 FPA 247
Score = 44 (20.5 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 144 QPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPP 181
Q + +Q+PQQ + P P M +P P +++ P
Sbjct: 217 QQVPQQQVQIPQQQQQAPQPP---MPVPGPGFPANVHP 251
Score = 43 (20.2 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 249 QHPAAQQRSSQP-MYHSGPNPPASI 272
Q P QQ++ QP M GP PA++
Sbjct: 225 QIPQQQQQAPQPPMPVPGPGFPANV 249
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 121 (47.7 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ ++
Sbjct: 124 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARSMLLQNPQLAYALLQAQVVMRIMD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 105 (42.0 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 316 RGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQP----PRPSSLSPEMEQ--ALLQQVMS 369
+G+ M G A Q G A G+ G G QP P S ++P+ ++ AL+ QV+
Sbjct: 471 QGAGMQGGGMQGAGMQAVGMQGA--GKQG-GGQPSSFSPGQSQVTPQDQEKAALIMQVLQ 527
Query: 370 LSPEQISLLPPEQRNQVLQLQQILRQ 395
L+ +QI++LPPEQR +L L++ +++
Sbjct: 528 LTADQIAMLPPEQRQSILILKEQIQK 553
Score = 42 (19.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 322 GPPENPAFTQLSGP-PPAVSGQMGPGNQPPR 351
GP E Q++ P P G M G PPR
Sbjct: 227 GPLERGQ-VQMADPRAPLPRGPMAAGGLPPR 256
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLS 371
GP P G M G Q P P ++ Q +QV +S
Sbjct: 375 GPGPGSRGPMTGGIQGPGPINMGAGGPQGP-RQVSGIS 411
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 123 (48.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 103 (41.3 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 23/68 (33%), Positives = 42/68 (61%)
Query: 330 TQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVL 387
T L G ++ G PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L
Sbjct: 507 TGLQGA--SIQGGSQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSIL 564
Query: 388 QLQQILRQ 395
L++ +++
Sbjct: 565 ILKEQIQK 572
Score = 55 (24.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 22/85 (25%), Positives = 33/85 (38%)
Query: 316 RGSWMSGP---PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMS 369
RG GP P P + + GP P G + P P ++ A +Q Q
Sbjct: 463 RGMDTRGPVPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGLQGASIQGGSQPGG 522
Query: 370 LSPEQISLLPPEQRNQVLQLQQILR 394
SP Q + P + L + Q+L+
Sbjct: 523 FSPGQNQVTPQDHEKAAL-IMQVLQ 546
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 123 (48.4 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 103 (41.3 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 338 AVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
++ G PG P S ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 516 SMQGGSQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 575
Score = 58 (25.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 23/85 (27%), Positives = 33/85 (38%)
Query: 316 RGSWMSGP---PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMS 369
RG GP P P + + GP P G + P P M+ A +Q Q
Sbjct: 466 RGMDTRGPVPGPRGPMPSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQPGG 525
Query: 370 LSPEQISLLPPEQRNQVLQLQQILR 394
SP Q + P + L + Q+L+
Sbjct: 526 FSPGQSQVTPQDHEKAAL-IMQVLQ 549
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 123 (48.4 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 102 (41.0 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 338 AVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
++ G PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 513 SIQGGSQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 572
Score = 58 (25.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 23/85 (27%), Positives = 33/85 (38%)
Query: 316 RGSWMSGP---PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMS 369
RG GP P P + + GP P G + P P M+ A +Q Q
Sbjct: 463 RGMDTRGPVPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGG 522
Query: 370 LSPEQISLLPPEQRNQVLQLQQILR 394
SP Q + P + L + Q+L+
Sbjct: 523 FSPGQNQVTPQDHEKAAL-IMQVLQ 546
Score = 48 (22.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 20/62 (32%), Positives = 25/62 (40%)
Query: 297 GSRLGSDFNNQIGNSMQIDRGSWMSG-PPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSL 355
GS + + N Q G ++G PP A Q P P GQM P P SL
Sbjct: 216 GSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAP---GQMPAAVTGPGPGSL 272
Query: 356 SP 357
+P
Sbjct: 273 AP 274
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 123 (48.4 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 102 (41.0 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 338 AVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
++ G PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 533 SIQGGSQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 592
Score = 58 (25.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 23/85 (27%), Positives = 33/85 (38%)
Query: 316 RGSWMSGP---PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMS 369
RG GP P P + + GP P G + P P M+ A +Q Q
Sbjct: 483 RGMDTRGPVPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGG 542
Query: 370 LSPEQISLLPPEQRNQVLQLQQILR 394
SP Q + P + L + Q+L+
Sbjct: 543 FSPGQNQVTPQDHEKAAL-IMQVLQ 566
Score = 48 (22.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 20/62 (32%), Positives = 25/62 (40%)
Query: 297 GSRLGSDFNNQIGNSMQIDRGSWMSG-PPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSL 355
GS + + N Q G ++G PP A Q P P GQM P P SL
Sbjct: 216 GSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAP---GQMPAAVTGPGPGSL 272
Query: 356 SP 357
+P
Sbjct: 273 AP 274
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 121 (47.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ ++
Sbjct: 124 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 104 (41.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/102 (32%), Positives = 54/102 (52%)
Query: 296 GGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSL 355
GG G+ G MQ G+ M G A Q G +GQ P + P S +
Sbjct: 533 GGGMQGAGMQ---GGGMQ---GAGMQGGGMQGAGMQ--GASKQGAGQ--PSSFSPGQSQV 582
Query: 356 SPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
+P+ ++ AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 583 TPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 624
Score = 60 (26.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 309 GNSMQIDRGSWMSGP-PENPAFTQLSGP-PPAVSGQMGPGNQPPR 351
G +MQ G + GP P Q+S P PP G M G PPR
Sbjct: 294 GGTMQPQVGMPVVGPVPLERGQMQISDPRPPMPRGPMPSGGIPPR 338
Score = 57 (25.1 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 324 PENPAFTQ-LSGPPPA-VSGQMGPGNQPPRPS-SLSPEMEQALLQQVMSLSPEQISLLPP 380
P P +Q +SGP P G GPG P P+ L P L QQ + P+ + P
Sbjct: 199 PLIPGKSQPVSGPGPGGPGGPGGPGGPGPGPAPGLCPGPNVMLNQQNPAPQPQHLPRRPV 258
Query: 381 EQRNQVLQ 388
+ ++Q
Sbjct: 259 KDIPPLMQ 266
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 331 QLSGPPPAVSGQMGPGNQPPRPSSL 355
++ GP P G M G Q P P ++
Sbjct: 468 EMRGPGPGSRGPMTGGIQGPGPINM 492
Score = 42 (19.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQV-MSLSPEQIS-LLPPEQR 383
GP PA GPG+ P ++ P++ ++ V + QIS PP R
Sbjct: 277 GPIPAAVPGPGPGSLTPG-GTMQPQVGMPVVGPVPLERGQMQISDPRPPMPR 327
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 123 (48.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 100 (40.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 338 AVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
++ G PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 508 SIQGGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 567
Score = 63 (27.2 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMSLSPEQISLLPP 380
P P + + GP P G +GP P M+ A +Q Q SP Q + P
Sbjct: 469 PRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQGGGQPGGFSPGQNQVTPQ 528
Query: 381 EQRNQVLQLQQILR 394
+ L + Q+L+
Sbjct: 529 DHEKAAL-IMQVLQ 541
Score = 47 (21.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 31/134 (23%), Positives = 45/134 (33%)
Query: 233 QSFHQYAPHVGSTVGF--QHPAAQQRSSQPMYHSGPNPP---ASI--GXXXXXXXXXXXX 285
Q+ H P GS+V Q+P Q + H PP AS+ G
Sbjct: 206 QTVHSAGPGSGSSVSMNQQNPQTPQAQTLSGMHVNGAPPLMQASLQAGVAAPGQIPATVT 265
Query: 286 XXXXXXXXXAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPA----VSG 341
AGG + + + ++RG P ++P GP PA G
Sbjct: 266 GPGPGSLAPAGGMQ--AQVGMPGSGPVSMERGQV---PMQDPRAAMQRGPLPANVPTPRG 320
Query: 342 QMGPGNQPPRPSSL 355
+G PR +L
Sbjct: 321 LLGDAPNDPRGGTL 334
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 464 GPVPGPRGPMPSGIQGPSPINM 485
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 123 (48.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 100 (40.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 338 AVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
++ G PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 513 SIQGGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 572
Score = 63 (27.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMSLSPEQISLLPP 380
P P + + GP P G +GP P M+ A +Q Q SP Q + P
Sbjct: 474 PRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQGGGQPGGFSPGQNQVTPQ 533
Query: 381 EQRNQVLQLQQILR 394
+ L + Q+L+
Sbjct: 534 DHEKAAL-IMQVLQ 546
Score = 57 (25.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 35/134 (26%), Positives = 45/134 (33%)
Query: 233 QSFHQYAPHVGSTVGF--QHPAAQQRSSQPMYHSGPNPP---ASI--GXXXXXXXXXXXX 285
Q H P GSTV Q+P A Q S H PP AS+ G
Sbjct: 206 QPVHSAGPGAGSTVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQSGVPTPGQIPAAVT 265
Query: 286 XXXXXXXXXAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPA----VSG 341
AGG + + + I+RG P ++P GP PA G
Sbjct: 266 GPGPGSLAPAGGMQ--AQVGMPGSGPVSIERGQV---PMQDPRAAMQRGPLPANVPTPRG 320
Query: 342 QMGPGNQPPRPSSL 355
+G PR +L
Sbjct: 321 LLGDAPNDPRGGTL 334
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00012
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 469 GPVPGPRGPMPSGIQGPSPINM 490
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 121 (47.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ ++
Sbjct: 124 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 104 (41.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 36/111 (32%), Positives = 56/111 (50%)
Query: 295 AGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQ------ 348
AG G + G MQ G+ M G A Q +G A G GPG Q
Sbjct: 505 AGMQGAGMQGASMQGAGMQ---GAGMQGAGMQGAGMQGAGMQGA--GIQGPGKQGGGQAS 559
Query: 349 --PPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
P S ++P+ ++ AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 560 SFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 610
Score = 59 (25.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 309 GNSMQIDRGSWMSGP-PENPAFTQLSGP-PPAVSGQMGPGNQPPR 351
G +MQ G GP P Q+S P P G M PG PPR
Sbjct: 283 GGAMQPQVGMPGVGPVPLERGQMQISDPRAPMPRGPMAPGGLPPR 327
Score = 50 (22.7 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 331 QLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLS 371
++ GP P+ G M G Q P P ++ Q +QV S+S
Sbjct: 459 EMRGPGPSSRGPMSGGIQGPGPINIGAGGPQGP-RQVPSIS 498
Score = 39 (18.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSLSPEM 359
GP PA GPG+ P ++ P++
Sbjct: 266 GPIPAAVPGPGPGSLTPG-GAMQPQV 290
Score = 37 (18.1 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 15/56 (26%), Positives = 19/56 (33%)
Query: 123 HQNQPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTM-SLPQPSQHS 177
HQ P S + S M L P+ L G P P+ LP + S
Sbjct: 359 HQGPPMHHASGHD--SRGPSSHEMRGGPLADPRLLIGEPRGPMIDQRGLPMDGRGS 412
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 123 (48.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 99 (39.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 332 LSGPPPAVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQL 389
+ G GQ PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L
Sbjct: 483 MQGASIQAGGQ--PGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILIL 540
Query: 390 QQILRQ 395
++ +++
Sbjct: 541 KEQIQK 546
Score = 63 (27.2 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMSLSPEQISLLPP 380
P P + + GP P G +GP P M+ A +Q Q SP Q + P
Sbjct: 448 PRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQ 507
Query: 381 EQRNQVLQLQQILR 394
+ L + Q+L+
Sbjct: 508 DHEKAAL-IMQVLQ 520
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 443 GPVPGPRGPMPSGIQGPSPINM 464
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 123 (48.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 99 (39.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 332 LSGPPPAVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQL 389
+ G GQ PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L
Sbjct: 487 MQGASIQAGGQ--PGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILIL 544
Query: 390 QQILRQ 395
++ +++
Sbjct: 545 KEQIQK 550
Score = 63 (27.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMSLSPEQISLLPP 380
P P + + GP P G +GP P M+ A +Q Q SP Q + P
Sbjct: 452 PRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQ 511
Query: 381 EQRNQVLQLQQILR 394
+ L + Q+L+
Sbjct: 512 DHEKAAL-IMQVLQ 524
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 447 GPVPGPRGPMPSGIQGPSPINM 468
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 123 (48.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 99 (39.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 332 LSGPPPAVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQL 389
+ G GQ PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L
Sbjct: 504 MQGASIQAGGQ--PGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILIL 561
Query: 390 QQILRQ 395
++ +++
Sbjct: 562 KEQIQK 567
Score = 63 (27.2 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMSLSPEQISLLPP 380
P P + + GP P G +GP P M+ A +Q Q SP Q + P
Sbjct: 469 PRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQ 528
Query: 381 EQRNQVLQLQQILR 394
+ L + Q+L+
Sbjct: 529 DHEKAAL-IMQVLQ 541
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 464 GPVPGPRGPMPSGIQGPSPINM 485
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 121 (47.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ ++
Sbjct: 124 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 102 (41.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 31/104 (29%), Positives = 54/104 (51%)
Query: 296 GGSR-LGSDFNNQIGNSMQID-RGSWMSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPS 353
GG + G G MQ +G+ M G + + G GQ P + P S
Sbjct: 529 GGMQGAGMQGGGMQGAGMQAGMQGASMQGGMQGAG---MQGASKQGGGQ--PSSFSPGQS 583
Query: 354 SLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
++P+ ++ AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 584 QVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 627
Score = 60 (26.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 309 GNSMQIDRGSWMSGP-PENPAFTQLSGP-PPAVSGQMGPGNQPPR 351
G +MQ G + GP P Q+S P PP G M G PPR
Sbjct: 294 GGAMQPQVGMPVVGPVPLERGQMQISDPRPPMPRGPMPSGGIPPR 338
Score = 59 (25.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 324 PENPAFTQ-LSGPPPAVSGQMGPGNQPPRPS-SLSPEMEQALLQQ 366
P P +Q +SGP P G GPG P P+ L P L QQ
Sbjct: 199 PLIPGKSQPVSGPGPGGPGPSGPGGPGPGPAPGLCPGPNVMLNQQ 243
Score = 44 (20.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 331 QLSGPPPAVSGQMGPGNQPPRPSSL 355
++ GP P+ G M G Q P P ++
Sbjct: 463 EMRGPGPSSRGPMTGGIQGPGPINM 487
Score = 42 (19.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 322 GPPENPAFTQLSGPPPAVSGQMGPGNQP---PR-PSSLSPEMEQALLQ 365
GP PA GP ++ Q P QP PR P P + Q +Q
Sbjct: 223 GPGPGPAPGLCPGPNVMLNQQNPPAPQPQHLPRRPVKDIPPLMQTSIQ 270
Score = 42 (19.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQV-MSLSPEQIS-LLPPEQR 383
GP PA GPG+ P ++ P++ ++ V + QIS PP R
Sbjct: 277 GPIPAAVPGPGPGSLTPG-GAMQPQVGMPVVGPVPLERGQMQISDPRPPMPR 327
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 123 (48.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 99 (39.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 332 LSGPPPAVSGQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQL 389
+ G GQ PG P + ++P+ + AL+ QV+ L+ +QI++LPPEQR +L L
Sbjct: 524 MQGASIQAGGQ--PGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILIL 581
Query: 390 QQILRQ 395
++ +++
Sbjct: 582 KEQIQK 587
Score = 63 (27.2 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQ---QVMSLSPEQISLLPP 380
P P + + GP P G +GP P M+ A +Q Q SP Q + P
Sbjct: 489 PRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQ 548
Query: 381 EQRNQVLQLQQILR 394
+ L + Q+L+
Sbjct: 549 DHEKAAL-IMQVLQ 561
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 484 GPVPGPRGPMPSGIQGPSPINM 505
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 121 (47.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ ++
Sbjct: 124 APESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 98 (39.6 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 341 GQMGPGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395
G P + P S ++P+ ++ AL+ QV+ L+ +QI++LPPEQR +L L++ +++
Sbjct: 555 GGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 611
Score = 55 (24.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 309 GNSMQIDRGSWMSGP-PENPAFTQLSGP-PPAVSGQMGPGNQPPR 351
G +MQ G GP P Q+S P P G + PG PPR
Sbjct: 283 GGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPR 327
Score = 45 (20.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 316 RGSWMSGP-PEN--PAFTQLSGPPPAVSGQMGPGNQPPRPSSLS 356
RG M GP P + P + GP P G GP P + +S
Sbjct: 456 RGLEMRGPVPSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGIS 499
Score = 41 (19.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSLSPEM 359
GP PA GPG+ P ++ P++
Sbjct: 266 GPIPAAVPGAGPGSLTPG-GAMQPQL 290
Score = 41 (19.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 320 MSGPPENPAFTQLSGPPPAVSGQMGPGNQPP----RPSSLSPEMEQALLQ 365
+SGP P GP ++ Q P QP RP P + Q +Q
Sbjct: 210 VSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQ 259
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 103 (41.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 320 MSGPPENPAFTQLSGPPPAVSGQMG-------PGNQPP-RPSSLSPEMEQALLQQVMSLS 371
M+ PP PA P AV GQ+ P QPP +P+ ++ LLQQV+++
Sbjct: 207 MAPPPAPPAAAAFQ-PFGAVPGQVSTPPMVNTPFAQPPPQPTQQQVPGQEELLQQVLNMP 265
Query: 372 PEQISLLPPEQRNQVLQLQQILRQ 395
I LPP +R+Q++ L+Q L Q
Sbjct: 266 QSAIDALPPMERSQIMLLRQQLMQ 289
Score = 97 (39.2 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 9 DGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMV 65
+ + LA + NQL +++ QMK+L + +A ++L Q P L A+FQA ++L +V
Sbjct: 135 NAISQTLAALPPNQLLDVLQQMKALAMSDPARATELLRQAPQLAYAIFQALLLLNLV 191
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 94 (38.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 327 PAFTQLSGPPPAVSG--QMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRN 384
P Q PPP QM P Q P+ + + LL QVM LS + +LP R
Sbjct: 263 PVAPQQYKPPPQQQPPVQMRPPVQQPQQNHQEEQQNAELLMQVMQLSEHDLQMLPAGDRE 322
Query: 385 QVLQLQQILRQ 395
++++L+Q L++
Sbjct: 323 KIIELRQQLKR 333
Score = 89 (36.4 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 16/66 (24%), Positives = 40/66 (60%)
Query: 2 AGKQVAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIM 61
AGK A + + +A ++ +++E+M Q++ ++ N + + L+++P + A+ QA ++
Sbjct: 124 AGK--APERISQTVASLAPEKMFELMKQLQESLKNNPSELHKFLVEHPQIAYAVLQAAVV 181
Query: 62 LGMVKP 67
+ +V P
Sbjct: 182 MRIVDP 187
Score = 68 (29.0 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 320 MSGPPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLP 379
M PP+ P F P P++ MGP PP +P+ Q Q V +P+Q P
Sbjct: 221 MPMPPK-PTFAH---PGPSMGPPMGPPMGPPMGHPQAPQYGQNYGQPV---APQQYK--P 271
Query: 380 PEQRNQVLQLQQILRQ 395
P Q+ +Q++ ++Q
Sbjct: 272 PPQQQPPVQMRPPVQQ 287
Score = 51 (23.0 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 164 PLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMP 199
P T + L ++ +++ P + PP + Q QMP
Sbjct: 187 PQTALGLLHRNKAATLTPFHNTPQGAPPMVQQQQMP 222
>POMBASE|SPBC3B9.11c [details] [associations]
symbol:ctf1 "mRNA cleavage and polyadenylation
specificity factor complex subunit Ctf1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IC] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC3B9.11c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0006378 GenomeReviews:CU329671_GR GO:GO:0003723
eggNOG:COG0724 GO:GO:0005847 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 PIR:T40350 RefSeq:NP_596669.1
ProteinModelPortal:O43040 STRING:O43040 EnsemblFungi:SPBC3B9.11c.1
GeneID:2541018 KEGG:spo:SPBC3B9.11c OMA:QLAYAIF OrthoDB:EOG4GQTF6
NextBio:20802132 Uniprot:O43040
Length = 363
Score = 102 (41.0 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 336 PPAVSGQMGPGNQPPRPSSLSPEMEQ----ALLQQVMSLSPEQISLLPPEQRNQVLQLQ- 390
PP+V ++ N + ++ S + + AL+QQ+++L+PEQI+ LPP QR+Q+L ++
Sbjct: 299 PPSVPQKIPSSNHKSQQANGSDQGNEGKRMALIQQLLALTPEQINALPPAQRDQILSIRR 358
Query: 391 QILRQ 395
Q RQ
Sbjct: 359 QHFRQ 363
Score = 84 (34.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 15/51 (29%), Positives = 34/51 (66%)
Query: 15 LAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMV 65
L+ S +L +++++++++ ++AR++LI NP L A FQA +++ +V
Sbjct: 222 LSTFSAQELLNMLSKLQTVVHIAPEEARRLLIANPALPYAAFQAMLLMNLV 272
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 123 (48.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 57 (25.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 35/134 (26%), Positives = 45/134 (33%)
Query: 233 QSFHQYAPHVGSTVGF--QHPAAQQRSSQPMYHSGPNPP---ASI--GXXXXXXXXXXXX 285
Q H P GSTV Q+P A Q S H PP AS+ G
Sbjct: 206 QPVHSAGPGAGSTVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQSGVPTPGQIPAAVT 265
Query: 286 XXXXXXXXXAGGSRLGSDFNNQIGNSMQIDRGSWMSGPPENPAFTQLSGPPPA----VSG 341
AGG + + + I+RG P ++P GP PA G
Sbjct: 266 GPGPGSLAPAGGMQ--AQVGMPGSGPVSIERGQV---PMQDPRAAMQRGPLPANVPTPRG 320
Query: 342 QMGPGNQPPRPSSL 355
+G PR +L
Sbjct: 321 LLGDAPNDPRGGTL 334
Score = 43 (20.2 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 324 PENPAFTQLSGPPPAVSGQMGP 345
P P + + GP P G +GP
Sbjct: 474 PRGPMPSGIQGPSPINMGAVGP 495
Score = 42 (19.8 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 334 GPPPAVSGQMGPGNQPPRPSSL 355
GP P G M G Q P P ++
Sbjct: 469 GPVPGPRGPMPSGIQGPSPINM 490
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 123 (48.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A + + +A + Q++E+M QMK ++ + Q+AR +L+QNP L AL QAQ+++ +V
Sbjct: 124 APESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 183
Query: 67 P 67
P
Sbjct: 184 P 184
Score = 48 (22.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 324 PENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSP 357
P+ P L G P GQM P P SL+P
Sbjct: 226 PQAPQAQSLGGVP--APGQMPAAVTGPGPGSLAP 257
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 94 (38.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 7 AGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVK 66
A D + L + QL +I+ QMK++ + +A ++L Q P L+ A+FQA +++ +V
Sbjct: 133 ATDAISRTLRTLPPAQLLDILQQMKTMSGADPARATELLTQAPQLSYAIFQALLLMDLVS 192
Query: 67 PPQV 70
P +
Sbjct: 193 PDAI 196
Score = 74 (31.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 336 PPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQIL 393
PPA P P P++ +P+ AL+QQV++L I LP +R Q++ L+ L
Sbjct: 247 PPAAPTAATP---TPAPAA-APQDTDALMQQVLALPQATIDQLPEAERAQIMALRASL 300
>DICTYBASE|DDB_G0280529 [details] [associations]
symbol:cstf2 "cleavage stimulation factor 64 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0280529 GO:GO:0005634 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 EMBL:AAFI02000036 eggNOG:COG0724 GO:GO:0006379
KO:K14407 InterPro:IPR025742 Pfam:PF14327 RefSeq:XP_641214.1
ProteinModelPortal:Q54V94 EnsemblProtists:DDB0233706 GeneID:8622595
KEGG:ddi:DDB_G0280529 InParanoid:Q54V94 Uniprot:Q54V94
Length = 541
Score = 97 (39.2 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 22 QLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMV 65
QL+E+++ MKS ++ QA ILI P + AL AQ++LGM+
Sbjct: 193 QLFEMLSNMKSFVQHQPDQAISILINYPQMGLALLHAQVVLGMI 236
Score = 66 (28.3 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 302 SDFNNQIGNSMQI-DRGSWMSGPPENPAFTQLSGPPPAVSG-QMGPGNQPPRPSSLSPEM 359
++ NN + N + + G+ M+ + + PPP +S M NQ L +
Sbjct: 456 NNMNNMMNNMNNMGNMGNMMNQQQQGGSIP----PPPGLSPVAMASWNQ------LGDKY 505
Query: 360 EQALLQQVMSLSPEQISLLPPEQRNQVLQLQQ 391
+Q V+SL+ +QI +P QR Q+++++Q
Sbjct: 506 KQ-FASYVLSLTQQQIDQVPESQRPQIIKIRQ 536
Score = 40 (19.1 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 182 ISHHSASQPPSLHQPQMPAASSQLQP 207
+S+ QP Q Q P Q QP
Sbjct: 246 LSNPKNQQPQQQQQQQQPQPQQQPQP 271
Score = 39 (18.8 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 296 GGSRLGSDFNNQIGN 310
GG+ +G++ NN +GN
Sbjct: 357 GGNNMGNNMNN-MGN 370
Score = 37 (18.1 bits), Expect = 7.8e-05, Sum P(4) = 7.8e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 182 ISHHSASQ----PPSLHQPQMPAASSQLQPPLQ 210
IS ++A+Q P QPQ Q QP Q
Sbjct: 236 ISQNAATQILLSNPKNQQPQQQQQQQQPQPQQQ 268
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 89 (36.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 15/32 (46%), Positives = 28/32 (87%)
Query: 362 ALLQQVMSLSPEQISLLPPEQRNQVLQLQQIL 393
AL+ Q+M+L+ +QI++LPP+Q+ ++LQ++Q L
Sbjct: 382 ALIAQLMALTDDQINVLPPDQKERILQIRQAL 413
Score = 79 (32.9 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 6 VAGDGLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIM 61
+A D + LA ++ N++ +++ +K+L + +QA Q+ NP L+ A+FQA +M
Sbjct: 154 LANDEVYRVLAQLAPNEIDYMLSAIKALCLEAPEQAAQLFETNPQLSYAVFQAMLM 209
>ZFIN|ZDB-GENE-030131-5794 [details] [associations]
symbol:snapc4 "small nuclear RNA activating
complex, polypeptide 4" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0035622
"intrahepatic bile duct development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
ZFIN:ZDB-GENE-030131-5794 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0031016 InterPro:IPR017930
PROSITE:PS51294 InterPro:IPR017877 PROSITE:PS50090 GO:GO:0035622
CTD:6621 EMBL:JQ434101 RefSeq:NP_001245339.1 UniGene:Dr.80445
GeneID:561241 KEGG:dre:561241 Uniprot:I1V1W6
Length = 1557
Score = 94 (38.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 27/70 (38%), Positives = 31/70 (44%)
Query: 323 PPENPAFTQLSGPPPAVSGQMGPGNQPPRPSSLSPEMEQAL-LQQVMSLSPEQISLLPPE 381
PP P Q S PPP + P PP+P SL P +L Q SL P Q LPP
Sbjct: 889 PPSQPPAQQPSLPPPQPPS-LPPPLPPPQPPSLPPPQPPSLPTSQQQSLPPSQQHSLPPF 947
Query: 382 QRNQVLQLQQ 391
Q + QQ
Sbjct: 948 QNPSLPPSQQ 957
Score = 79 (32.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 23/51 (45%), Positives = 26/51 (50%)
Query: 160 RPNAPLTTMSLPQPSQHSSMPPISHHSASQPPSLHQPQMPAASSQLQPPLQ 210
+P P SLP PSQ S+PP S PPS QP +P S QPP Q
Sbjct: 842 KPAEPSQQPSLP-PSQKPSLPP------SVPPS-QQPTLPPPSQPSQPPPQ 884
Score = 46 (21.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 23 LYEIMTQMKSLIEQNEQQARQILIQ 47
L E + +++ L+ +N+QQ ++I +Q
Sbjct: 124 LKEKLAELEQLLIENQQQQKEIEVQ 148
>UNIPROTKB|I3L8Y8 [details] [associations]
symbol:ATN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0050827 "toxin receptor binding" evidence=IEA] [GO:0030011
"maintenance of cell polarity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016477 "cell migration"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0009404 "toxin metabolic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
GO:GO:0005737 GO:GO:0003714 GO:GO:0016477 GO:GO:0051402
GO:GO:0000122 GO:GO:0016363 GO:GO:0009404 KO:K05626 OMA:ATFPHVT
GO:GO:0030011 InterPro:IPR017993 InterPro:IPR002951 Pfam:PF03154
PRINTS:PR01222 GeneTree:ENSGT00580000081398 EMBL:FP325257
RefSeq:XP_003126588.2 Ensembl:ENSSSCT00000028309 GeneID:100153709
KEGG:ssc:100153709 Uniprot:I3L8Y8
Length = 1182
Score = 108 (43.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 45/155 (29%), Positives = 64/155 (41%)
Query: 127 PAM-PISSASLPAANLQSQPMHSHALQVP----QQLKGRPNAPLTTMSLPQPSQHSSMPP 181
PA+ P+++AS L +QP+ H L P Q + G P P +L PS H +PP
Sbjct: 306 PALRPLNNASASPPGLGAQPLPGH-LPSPHSMGQGMGGLPPGPEKGPTLA-PSPHP-LPP 362
Query: 182 ISHHSASQPPSLHQPQMPAASSQLQPPLQSTGXXXXXXXXXXXXXXXXASMQSF-HQYAP 240
S SA PP + P +SS S+ ++ S+ H + P
Sbjct: 363 ASSSSAPAPPMRY----PYSSSG------SSAAASSSSSASVSQYPASQALPSYPHSFPP 412
Query: 241 HVGSTVGFQHPAAQQRS--SQPMYHSGPNPPASIG 273
+V Q P Q S SQ ++ GP PP G
Sbjct: 413 PTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYG 447
Score = 61 (26.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 21/70 (30%), Positives = 26/70 (37%)
Query: 319 WMSGPPENPAFTQL-------SGP-PPAVSGQMGPGNQPPRPSSLSPEMEQALLQQVMSL 370
W GPP P + +L GP PP+ GQ PP P+ +Q QQ
Sbjct: 436 WSQGPPPPPPYGRLLANSNAHPGPFPPSAGGQSTA--HPPAPAHHHHHQQQQQQQQQQQQ 493
Query: 371 SPEQISLLPP 380
S PP
Sbjct: 494 QQHHGSSGPP 503
>UNIPROTKB|J9JIM4 [details] [associations]
symbol:AMEL "Amelogenin" species:9823 "Sus scrofa"
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005578 "proteinaceous extracellular matrix" evidence=IEA]
InterPro:IPR004116 Pfam:PF02948 PRINTS:PR01757 SMART:SM00818
GO:GO:0007275 GO:GO:0005578 GeneTree:ENSGT00390000009151
PANTHER:PTHR10039:SF2 EMBL:CU606962 Ensembl:ENSSSCT00000013250
Uniprot:J9JIM4
Length = 173
Score = 106 (42.4 bits), Expect = 0.00070, P = 0.00070
Identities = 32/84 (38%), Positives = 39/84 (46%)
Query: 129 MPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSAS 188
+P+ S P ++ QP H H VP Q G P P+ +P P QHS M P HH +
Sbjct: 51 IPVVSQQTPQSHAL-QP-HHHIPMVPAQQPGIPQQPM----MPLPGQHS-MTPTQHHQPN 103
Query: 189 QPPSLHQPQMPAASSQLQP--PLQ 210
P QP P Q QP PLQ
Sbjct: 104 LPLPAQQPFQPQPV-QPQPHQPLQ 126
>UNIPROTKB|J9P5D1 [details] [associations]
symbol:MED15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019087 Pfam:PF09606 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00670000098037 EMBL:AAEX03014886
EMBL:AAEX03014885 Ensembl:ENSCAFT00000043769 Uniprot:J9P5D1
Length = 553
Score = 90 (36.7 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 33/102 (32%), Positives = 42/102 (41%)
Query: 119 IRKQHQNQPAMPISSASLPA-ANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHS 177
I+ HQNQ + L A LQ Q Q Q L+ +P M PQP
Sbjct: 27 IKLHHQNQQQIQQQQQQLQRMAQLQLQQQQQ---QQQQALQAQPPLQQPPMQQPQPPPSQ 83
Query: 178 SMP----PISHHSASQPPSLHQPQMPAAS----SQLQPPLQS 211
++P P+ H QPP QPQ P + SQL P Q+
Sbjct: 84 ALPQQLQPMHHPQHHQPPP--QPQQPPVAQNQPSQLPPQSQT 123
Score = 63 (27.2 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 28/92 (30%), Positives = 39/92 (42%)
Query: 308 IGNSMQIDRGS--WMSGP-PENPAFT-QLSGPPPAVSGQMG-PGNQP---------PRPS 353
+G+ +Q+ + S +S P P T Q PPP S Q G P +QP P PS
Sbjct: 184 VGSGVQVSQNSLTMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSPS 243
Query: 354 SLSPEME-QALLQQVMSLSPEQISLLPPEQRN 384
S P Q V + +P+ S+ P N
Sbjct: 244 SFLPSPSPQPSQSPVTARTPQNFSVPSPGPLN 275
Score = 44 (20.5 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 22 QLYEIMTQMKSLIEQNEQQARQILIQ 47
Q ++ + Q + ++Q +QQ +Q LI+
Sbjct: 3 QQFQAVVQQQQQLQQQQQQQQQHLIK 28
>ZFIN|ZDB-GENE-030131-4497 [details] [associations]
symbol:si:ch211-87l2.1 "si:ch211-87l2.1"
species:7955 "Danio rerio" [GO:0005097 "Rab GTPase activator
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0032313 "regulation of Rab GTPase activity" evidence=IEA]
InterPro:IPR000195 Pfam:PF00566 PROSITE:PS50086 SMART:SM00164
ZFIN:ZDB-GENE-030131-4497 GO:GO:0005622 GO:GO:0005097 GO:GO:0032851
SUPFAM:SSF47923 GeneTree:ENSGT00700000104012 EMBL:BX248505
IPI:IPI00960948 Ensembl:ENSDART00000146996 ArrayExpress:F1R5B1
Uniprot:F1R5B1
Length = 831
Score = 83 (34.3 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 27/73 (36%), Positives = 32/73 (43%)
Query: 311 SMQIDRGSWMSGPPENPAFTQLSGPPPAVSGQMGPGN--QPPRPSSLSPEMEQALLQQVM 368
S Q+ RG + PE+ T S P PA Q P PP PS L PE+ Q Q
Sbjct: 660 STQL-RGESRALTPESSPLTPESRPLPAEPRQFAPEPIPLPPEPSQLPPELRQLPPQSRQ 718
Query: 369 SLSPEQISLLPPE 381
S + LPPE
Sbjct: 719 LPSDSSLFPLPPE 731
Score = 81 (33.6 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 126 QPAMPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHH 185
QP+ PI + P + + P SH ++VP K P + S H PP H+
Sbjct: 434 QPS-PIFTHISPPSQTAADPRPSHPMEVPHPSKIEPLHNPKDSNNTNNSAHLKDPP--HN 490
Query: 186 SASQPPSLHQPQMPAASSQLQP 207
S S P + +P S QL P
Sbjct: 491 SNSNPLLIESRPLPPESRQLPP 512
>UNIPROTKB|Q99217 [details] [associations]
symbol:AMELX "Amelogenin, X isoform" species:9606 "Homo
sapiens" [GO:0001649 "osteoblast differentiation" evidence=ISS]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0002062 "chondrocyte differentiation" evidence=ISS] [GO:0032967
"positive regulation of collagen biosynthetic process"
evidence=ISS] [GO:0070166 "enamel mineralization" evidence=IMP]
[GO:0070172 "positive regulation of tooth mineralization"
evidence=TAS] [GO:0030345 "structural constituent of tooth enamel"
evidence=IDA;IMP] [GO:0034505 "tooth mineralization"
evidence=ISS;IMP] [GO:0005578 "proteinaceous extracellular matrix"
evidence=IDA] [GO:0031214 "biomineral tissue development"
evidence=TAS] [GO:0050801 "ion homeostasis" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007165 "signal
transduction" evidence=TAS] [GO:0007155 "cell adhesion"
evidence=ISS] [GO:0008083 "growth factor activity" evidence=ISS]
[GO:0008283 "cell proliferation" evidence=ISS] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=ISS]
[GO:0042802 "identical protein binding" evidence=ISS] [GO:0043498
"cell surface binding" evidence=ISS] [GO:0046848 "hydroxyapatite
binding" evidence=ISS] InterPro:IPR004116 Pfam:PF02948
PRINTS:PR01757 SMART:SM00818 GO:GO:0007165 GO:GO:0008283
GO:GO:0005578 GO:GO:0032967 GO:GO:0007155 GO:GO:0042802
GO:GO:0043498 GO:GO:0001649 GO:GO:0030345 GO:GO:0008083 CTD:265
eggNOG:NOG69988 HOGENOM:HOG000231643 OMA:HSMTPTQ GO:GO:0002062
GO:GO:0001837 PANTHER:PTHR10039:SF2 EMBL:M86932 EMBL:AF436849
EMBL:AY040206 EMBL:AC002366 EMBL:BC074951 EMBL:M55418 EMBL:X14440
EMBL:S67147 IPI:IPI00013959 IPI:IPI00220033 IPI:IPI00220034
PIR:B41816 RefSeq:NP_001133.1 RefSeq:NP_872621.1 RefSeq:NP_872622.1
UniGene:Hs.654436 ProteinModelPortal:Q99217 STRING:Q99217
DMDM:1168430 DNASU:265 Ensembl:ENST00000348912
Ensembl:ENST00000380712 Ensembl:ENST00000380714 GeneID:265
KEGG:hsa:265 UCSC:uc004cus.3 UCSC:uc004cut.3 UCSC:uc004cuu.3
GeneCards:GC0XP011221 H-InvDB:HIX0176766 HGNC:HGNC:461
HPA:HPA005988 MIM:300391 MIM:301200 neXtProt:NX_Q99217
Orphanet:100033 PharmGKB:PA24766 HOVERGEN:HBG016835
OrthoDB:EOG4G1MHX GenomeRNAi:265 NextBio:1037 PMAP-CutDB:Q99217
ArrayExpress:Q99217 Bgee:Q99217 CleanEx:HS_AMELX
Genevestigator:Q99217 GermOnline:ENSG00000125363 GO:GO:0044420
GO:GO:0046848 GO:GO:0070166 GO:GO:0050801 GO:GO:0070172
Uniprot:Q99217
Length = 191
Score = 107 (42.7 bits), Expect = 0.00084, P = 0.00084
Identities = 32/84 (38%), Positives = 39/84 (46%)
Query: 129 MPISSASLPAANLQSQPMHSHALQVPQQLKGRPNAPLTTMSLPQPSQHSSMPPISHHSAS 188
+P+ S P + QP H H VP Q P P+ +P P QHS M PI HH +
Sbjct: 66 IPVLSQQHPPTHTL-QP-HHHIPVVPAQQPVIPQQPM----MPVPGQHS-MTPIQHHQPN 118
Query: 189 QPPSLHQPQMPAASSQLQP--PLQ 210
PP QP P Q QP P+Q
Sbjct: 119 LPPPAQQPYQPQPV-QPQPHQPMQ 141
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.125 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 395 330 0.00089 116 3 11 23 0.47 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 567 (60 KB)
Total size of DFA: 187 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.96u 0.17s 37.13t Elapsed: 00:00:02
Total cpu time: 36.97u 0.17s 37.14t Elapsed: 00:00:02
Start: Fri May 10 05:30:39 2013 End: Fri May 10 05:30:41 2013