BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040162
         (395 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
           SV=1
          Length = 572

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184



 Score = 36.2 bits (82), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 362 ALLQQVMSLSPEQISLLPPEQRNQVLQLQQ 391
           AL+ QV+ L+ +QI++LPPEQR  +L L++
Sbjct: 534 ALIMQVLQLTADQIAMLPPEQRQSILILKE 563


>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
           SV=1
          Length = 577

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184



 Score = 36.2 bits (82), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 362 ALLQQVMSLSPEQISLLPPEQRNQVLQLQQ 391
           AL+ QV+ L+ +QI++LPPEQR  +L L++
Sbjct: 539 ALIMQVLQLTADQIAMLPPEQRQSILILKE 568


>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
           SV=1
          Length = 577

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184



 Score = 36.2 bits (82), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 362 ALLQQVMSLSPEQISLLPPEQRNQVLQLQQ 391
           AL+ QV+ L+ +QI++LPPEQR  +L L++
Sbjct: 539 ALIMQVLQLTADQIAMLPPEQRQSILILKE 568


>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
           SV=2
          Length = 580

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ +V P
Sbjct: 138 EQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDP 184



 Score = 37.0 bits (84), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 345 PGNQPPRPSSLSPEMEQ--ALLQQVMSLSPEQISLLPPEQRNQVLQLQQ 391
           PG   P  S ++P+  +  AL+ QV+ L+ +QI++LPPEQR  +L L++
Sbjct: 523 PGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKE 571


>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
           GN=Cstf2t PE=1 SV=2
          Length = 632

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 34/47 (72%)

Query: 21  NQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKP 67
            Q++E+M QMK  ++ + Q+AR +L+QNP L  AL QAQ+++ ++ P
Sbjct: 138 EQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDP 184



 Score = 37.0 bits (84), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 9/49 (18%)

Query: 352 PSSLSPEMEQ---------ALLQQVMSLSPEQISLLPPEQRNQVLQLQQ 391
           PSS SP   Q         AL+ QV+ L+ +QI++LPPEQR  +L L++
Sbjct: 575 PSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKE 623


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.125    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,331,231
Number of Sequences: 539616
Number of extensions: 7369292
Number of successful extensions: 51315
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 2858
Number of HSP's that attempted gapping in prelim test: 30297
Number of HSP's gapped (non-prelim): 12622
length of query: 395
length of database: 191,569,459
effective HSP length: 120
effective length of query: 275
effective length of database: 126,815,539
effective search space: 34874273225
effective search space used: 34874273225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)