Query 040162
Match_columns 395
No_of_seqs 158 out of 190
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 08:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eba_G RNA15, KLLA0F09383P; HA 99.9 5.6E-25 1.9E-29 198.8 3.1 68 4-71 39-107 (174)
2 2l9b_A MRNA 3'-END-processing 99.8 5.4E-21 1.8E-25 162.2 5.1 74 3-76 33-107 (109)
3 2j8p_A Cleavage stimulation fa 99.4 5.3E-13 1.8E-17 99.5 5.2 38 358-395 7-44 (49)
4 1kbh_B CREB-binding protein, n 48.6 6.3 0.00021 30.4 1.3 41 17-57 4-45 (59)
5 2qsf_X RAD23, UV excision repa 48.6 13 0.00043 33.6 3.5 31 25-55 33-67 (171)
6 2k7r_A Primosomal protein DNAI 46.2 23 0.0008 28.6 4.4 49 9-58 2-52 (106)
7 3e21_A HFAF1, FAS-associated f 37.9 32 0.0011 24.8 3.6 32 24-55 6-39 (45)
8 2dal_A Protein KIAA0794; FAS a 34.6 65 0.0022 24.0 4.9 34 22-55 14-48 (62)
9 1v92_A NSFL1 cofactor P47; 3-h 32.5 52 0.0018 22.4 3.8 32 24-55 6-38 (46)
10 2f4m_B UV excision repair prot 31.0 31 0.0011 26.3 2.7 29 27-55 13-45 (61)
11 2dhr_A FTSH; AAA+ protein, hex 25.4 42 0.0014 34.0 3.3 59 17-75 409-467 (499)
12 2dam_A ETEA protein; KIAA0887, 24.4 72 0.0025 24.2 3.7 39 16-55 12-52 (67)
13 2dzl_A Protein FAM100B; UBA-li 24.0 92 0.0032 23.6 4.2 31 25-55 19-50 (66)
14 1pve_A HHR23B, UV excision rep 23.0 21 0.00071 28.2 0.4 27 29-55 17-47 (72)
15 2di4_A Zinc protease, cell div 22.3 1E+02 0.0036 28.6 5.1 57 18-74 143-199 (238)
16 3a1g_B Polymerase basic protei 20.4 96 0.0033 22.3 3.3 31 24-56 4-34 (40)
No 1
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=99.90 E-value=5.6e-25 Score=198.79 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=62.1
Q ss_pred CCCCCC-chhhhhcCCCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCC
Q 040162 4 KQVAGD-GLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVI 71 (395)
Q Consensus 4 ~~~apD-~IS~tLasmpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl 71 (395)
+.+++| .|+++|++|+++||||||++||.|+.+||++||+||.+||||+||||||+|+||+||+++++
T Consensus 39 ~~t~pd~~IS~~Ls~lpp~QL~eiL~qmK~l~~~nP~~ar~LL~~nPQLayAl~QAlL~mgivd~~~l~ 107 (174)
T 4eba_G 39 NMTTPAMCISSELGKLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVDQLT 107 (174)
T ss_dssp TTCCHHHHHHHHHTTSCHHHHHHHHHHHHHGGGC--CCHHHHHHSCTHHHHHHHHHHHHTSCCSSSTHH
T ss_pred CcCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHH
Confidence 456788 99999999999999999999999999999999999999999999999999999999986554
No 2
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.4e-21 Score=162.17 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=68.3
Q ss_pred CCCCCCC-chhhhhcCCCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCCCCCCC
Q 040162 3 GKQVAGD-GLPANLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQP 76 (395)
Q Consensus 3 ~~~~apD-~IS~tLasmpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl~~~qp 76 (395)
.+++|+| .|+++|++++++||||||++||.|+..||++||+||.+||||+||||||+|+||+||++++++.+.+
T Consensus 33 ~~~~ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a~~LL~q~PQLAyAl~QalL~m~ivd~~~l~~ll~~ 107 (109)
T 2l9b_A 33 INMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDAASLLELCPQLSFVTAELLLTNGICKVDDLIPLASR 107 (109)
T ss_dssp TTTSCHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHTSSCHHHHTTTC--
T ss_pred CCCCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHHHhcc
Confidence 4568899 9999999999999999999999999999999999999999999999999999999999887766543
No 3
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=99.36 E-value=5.3e-13 Score=99.49 Aligned_cols=38 Identities=39% Similarity=0.730 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCHHHHhcCChHHHHHHHHHHHHHhC
Q 040162 358 EMEQALLQQVMSLSPEQISLLPPEQRNQVLQLQQILRQ 395 (395)
Q Consensus 358 ~~~~aLl~QVl~Lt~eqI~~LPp~qR~QIl~Lr~ql~~ 395 (395)
+++++||+|||+||+||||+|||+||++|++||++|.+
T Consensus 7 ~~q~~Li~QVLsLt~eQI~~LPp~qR~qI~~LR~q~~~ 44 (49)
T 2j8p_A 7 HEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 44 (49)
T ss_dssp HTHHHHHHHHHTSCHHHHHTSCHHHHTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhCCHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 55679999999999999999999999999999999864
No 4
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=48.61 E-value=6.3 Score=30.42 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHHhh-CHHHHHHHHHhCCchHHHHHH
Q 040162 17 GMSKNQLYEIMTQMKSLIEQ-NEQQARQILIQNPLLTKALFQ 57 (395)
Q Consensus 17 smpP~QL~ELLsqMK~Li~q-nP~qARqLL~qNPQLAyALfQ 57 (395)
+++...|-+||..+|.=... .-.++-.||+.||+|--|++.
T Consensus 4 ~~~~~aLqqLl~tlksp~speqqqqvl~ILksNPqLMAAfIK 45 (59)
T 1kbh_B 4 SISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIK 45 (59)
T ss_dssp SSSTTHHHHHHHHHHSCTTTTCSTHHHHHHTTSHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 57788999999999974432 346799999999999988765
No 5
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=48.59 E-value=13 Score=33.64 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhCHHHHHHHHH----hCCchHHHH
Q 040162 25 EIMTQMKSLIEQNEQQARQILI----QNPLLTKAL 55 (395)
Q Consensus 25 ELLsqMK~Li~qnP~qARqLL~----qNPQLAyAL 55 (395)
..+.+|+.++..||+-...||. .||+|...|
T Consensus 33 Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI 67 (171)
T 2qsf_X 33 EDLLSLRQVVSGNPEALAPLLENISARYPQLREHI 67 (171)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHH
Confidence 3456899999999999999998 999999876
No 6
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=46.15 E-value=23 Score=28.63 Aligned_cols=49 Identities=14% Similarity=0.377 Sum_probs=36.8
Q ss_pred CchhhhhcCC-CHHHHHHHHHHHHHHHhhCHHHHHHHHHhCC-chHHHHHHH
Q 040162 9 DGLPANLAGM-SKNQLYEIMTQMKSLIEQNEQQARQILIQNP-LLTKALFQA 58 (395)
Q Consensus 9 D~IS~tLasm-pP~QL~ELLsqMK~Li~qnP~qARqLL~qNP-QLAyALfQA 58 (395)
|.|.++|..+ ....+-+-..+|+.=+..||+ +++||.+|+ +|+...+..
T Consensus 2 e~i~~~l~~~~~~~~~~~~~~~~~~~vl~dP~-V~~Fl~~h~~~l~~~~I~~ 52 (106)
T 2k7r_A 2 EPIGRSLQGVTGRPDFQKRLEQMKEKVMKDQD-VQAFLKENEEVIDQKMIEK 52 (106)
T ss_dssp CCTTCSCCCCSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHSTTTCCHHHHHH
T ss_pred ccHHHHHHHHHhcccHHHHHHHHHHHHHcCHH-HHHHHHHChhhCCHHHHHh
Confidence 5677788874 344555555778888888998 888999999 688776654
No 7
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=37.86 E-value=32 Score=24.77 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhC-HHHHHHHHHhCC-chHHHH
Q 040162 24 YEIMTQMKSLIEQN-EQQARQILIQNP-LLTKAL 55 (395)
Q Consensus 24 ~ELLsqMK~Li~qn-P~qARqLL~qNP-QLAyAL 55 (395)
-|+|++...+...+ +++||.+|..|- +|-.|+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av 39 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAI 39 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHH
Confidence 36788888888755 699999999887 665554
No 8
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.59 E-value=65 Score=23.96 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhCC-chHHHH
Q 040162 22 QLYEIMTQMKSLIEQNEQQARQILIQNP-LLTKAL 55 (395)
Q Consensus 22 QL~ELLsqMK~Li~qnP~qARqLL~qNP-QLAyAL 55 (395)
...|+|.+...+...+.+.||.+|..|- +|-.||
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av 48 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAV 48 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHH
Confidence 3478888888888889999999999865 555554
No 9
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=32.50 E-value=52 Score=22.37 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHhCC-chHHHH
Q 040162 24 YEIMTQMKSLIEQNEQQARQILIQNP-LLTKAL 55 (395)
Q Consensus 24 ~ELLsqMK~Li~qnP~qARqLL~qNP-QLAyAL 55 (395)
-|+|.+...+...+.+.|+.+|..+- +|-.||
T Consensus 6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai 38 (46)
T 1v92_A 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIAL 38 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHH
Confidence 46788888888889999999999764 555554
No 10
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=31.03 E-value=31 Score=26.30 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCHHHHHHHH----HhCCchHHHH
Q 040162 27 MTQMKSLIEQNEQQARQIL----IQNPLLTKAL 55 (395)
Q Consensus 27 LsqMK~Li~qnP~qARqLL----~qNPQLAyAL 55 (395)
+.+|+.++..||+-...|| ..||+|+..+
T Consensus 13 f~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I 45 (61)
T 2f4m_B 13 FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQI 45 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHH
Confidence 4556666777765544444 3566666544
No 11
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=25.44 E-value=42 Score=34.00 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCCCCCC
Q 040162 17 GMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSVQ 75 (395)
Q Consensus 17 smpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl~~~q 75 (395)
.++.+--.+|-.+++.++...-++|++||.+|-...-+|..+++...-||.+++...+.
T Consensus 409 ~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~ 467 (499)
T 2dhr_A 409 QYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVE 467 (499)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhc
Confidence 34555555666789999999999999999999999999999999999999877766554
No 12
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.35 E-value=72 Score=24.22 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=30.1
Q ss_pred cCCCHHHHHHHHHHHHHHHh-hCHHHHHHHHHhCC-chHHHH
Q 040162 16 AGMSKNQLYEIMTQMKSLIE-QNEQQARQILIQNP-LLTKAL 55 (395)
Q Consensus 16 asmpP~QL~ELLsqMK~Li~-qnP~qARqLL~qNP-QLAyAL 55 (395)
.+|+.++ .|+|.+...+.. .+.+.||.+|..|- +|-.||
T Consensus 12 ~~Ls~~~-~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av 52 (67)
T 2dam_A 12 RDLTQEQ-TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAV 52 (67)
T ss_dssp CCCCHHH-HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHH
T ss_pred hhcChhH-HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3566664 688999999998 89999999999975 454443
No 13
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.05 E-value=92 Score=23.64 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHhCC-chHHHH
Q 040162 25 EIMTQMKSLIEQNEQQARQILIQNP-LLTKAL 55 (395)
Q Consensus 25 ELLsqMK~Li~qnP~qARqLL~qNP-QLAyAL 55 (395)
|+|.+...+...+++.|+.+|..|- +|-.||
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al 50 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETAL 50 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHH
Confidence 5677777777789999999999886 666665
No 14
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=22.98 E-value=21 Score=28.22 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=14.6
Q ss_pred HHHHHHhhCHHHHHHHHH----hCCchHHHH
Q 040162 29 QMKSLIEQNEQQARQILI----QNPLLTKAL 55 (395)
Q Consensus 29 qMK~Li~qnP~qARqLL~----qNPQLAyAL 55 (395)
+|+.++..||+-...||. .||+|+..+
T Consensus 17 qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I 47 (72)
T 1pve_A 17 QMRQIIQQNPSLLPALLQQIGRENPQLLQQI 47 (72)
T ss_dssp THHHHHTTCGGGHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHhHCHHHHHHH
Confidence 466666666555444443 466665544
No 15
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=22.27 E-value=1e+02 Score=28.58 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCCCCC
Q 040162 18 MSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIPSV 74 (395)
Q Consensus 18 mpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl~~~ 74 (395)
++.+--.+|=...+.++...-++|++||.+|-...-+|..+||.-.-||.+++...+
T Consensus 143 ~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il 199 (238)
T 2di4_A 143 TSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVF 199 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHH
Confidence 333333444567888888899999999999999999999999999999876665433
No 16
>3a1g_B Polymerase basic protein 2; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_B
Probab=20.40 E-value=96 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHH
Q 040162 24 YEIMTQMKSLIEQNEQQARQILIQNPLLTKALF 56 (395)
Q Consensus 24 ~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALf 56 (395)
.|-|..+|+|+..+ +||++|..--=--|++|
T Consensus 4 ~~~ikelk~L~~d~--~a~~ilt~~TVd~y~i~ 34 (40)
T 3a1g_B 4 MERIKELRNLMSQS--RTREILTKTTVDHMAII 34 (40)
T ss_dssp HHHHHHHHHHTTSH--HHHHHHHHCBTTHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHhhcchHHHHHH
Confidence 46678889888764 78999987666666665
Done!