Query 040162
Match_columns 395
No_of_seqs 158 out of 190
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 08:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040162.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040162hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 43.0 13 0.00092 25.0 3.8 32 24-55 6-38 (46)
2 d2di4a1 a.269.1.1 (A:406-607) 41.2 8.7 0.00063 31.4 3.3 49 24-72 140-188 (202)
3 d2ce7a1 a.269.1.1 (A:411-603) 38.8 8.1 0.00059 31.4 2.7 53 18-70 135-187 (193)
4 d2f4mb1 a.189.1.1 (B:275-332) 25.7 21 0.0015 25.5 2.7 31 27-57 11-45 (58)
5 d1deeg_ a.8.1.1 (G:) Immunoglo 19.3 44 0.0032 23.3 3.2 33 14-50 11-43 (51)
6 d1mo6a2 d.48.1.1 (A:270-329) R 19.0 39 0.0028 23.9 3.0 23 36-58 32-54 (60)
7 d1lfma_ a.3.1.1 (A:) Mitochond 18.6 33 0.0024 23.9 2.6 17 18-34 86-102 (103)
8 d1f1fa_ a.3.1.1 (A:) Cytochrom 17.9 46 0.0033 22.7 3.2 19 17-35 67-85 (88)
9 d1b0nb_ a.34.1.1 (B:) SinI ant 17.8 69 0.005 20.0 3.6 26 22-48 6-31 (31)
10 d1xp8a2 d.48.1.1 (A:283-341) R 17.4 22 0.0016 25.2 1.3 23 36-58 31-53 (59)
No 1
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=42.99 E-value=13 Score=25.02 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHhCC-chHHHH
Q 040162 24 YEIMTQMKSLIEQNEQQARQILIQNP-LLTKAL 55 (395)
Q Consensus 24 ~ELLsqMK~Li~qnP~qARqLL~qNP-QLAyAL 55 (395)
-|+|.+...+...++++||.+|..+- +|-.||
T Consensus 6 ~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai 38 (46)
T d1v92a_ 6 QDALREFVAVTGAEEDRARFFLESAGWDLQIAL 38 (46)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHH
Confidence 57888888888889999999999875 554444
No 2
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=41.20 E-value=8.7 Score=31.37 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCCCC
Q 040162 24 YEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQVIP 72 (395)
Q Consensus 24 ~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~Vl~ 72 (395)
.++-...+.++..--++|++||.+|-.+..+|..+++.-+.|+.+++..
T Consensus 140 ~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~Lle~etL~~~ei~~ 188 (202)
T d2di4a1 140 REIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVE 188 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHH
Confidence 3455778888888899999999999999999999999999998766543
No 3
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=38.78 E-value=8.1 Score=31.41 Aligned_cols=53 Identities=9% Similarity=0.153 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCchHHHHHHHHHHhcCCCCCCC
Q 040162 18 MSKNQLYEIMTQMKSLIEQNEQQARQILIQNPLLTKALFQAQIMLGMVKPPQV 70 (395)
Q Consensus 18 mpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQLAyALfQAqLlMGmVDp~~V 70 (395)
++..--..+-.+++.++...-++|++||..|-.+..+|..+++.-+.||.+++
T Consensus 135 ~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~Lle~e~L~g~ei 187 (193)
T d2ce7a1 135 YSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDEL 187 (193)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHH
Confidence 33443445557788888889999999999999999999999999998886544
No 4
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.71 E-value=21 Score=25.46 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHh----CCchHHHHHH
Q 040162 27 MTQMKSLIEQNEQQARQILIQ----NPLLTKALFQ 57 (395)
Q Consensus 27 LsqMK~Li~qnP~qARqLL~q----NPQLAyALfQ 57 (395)
+.+|+.++..||+-...+|.+ ||+|+..+-+
T Consensus 11 Fq~lR~~vq~nP~~L~~lLqql~~~NP~L~q~I~~ 45 (58)
T d2f4mb1 11 FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQ 45 (58)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHH
No 5
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=19.26 E-value=44 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=28.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhCHHHHHHHHHhCCc
Q 040162 14 NLAGMSKNQLYEIMTQMKSLIEQNEQQARQILIQNPL 50 (395)
Q Consensus 14 tLasmpP~QL~ELLsqMK~Li~qnP~qARqLL~qNPQ 50 (395)
+|-+|+.+|.--+|..||. ||++..++|.+..-
T Consensus 11 ~lpnl~eeQrn~fI~sLkd----dPs~sanvl~Eakk 43 (51)
T d1deeg_ 11 NMPNLNEAQRNGFIQSLKD----DPSQSTNVLGEAKK 43 (51)
T ss_dssp HCSSSCHHHHHHHHHHHHH----CGGGHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHhh----ChHHHHHHHHHHHH
Confidence 4778999999999999996 99999999987533
No 6
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.01 E-value=39 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.5
Q ss_pred hCHHHHHHHHHhCCchHHHHHHH
Q 040162 36 QNEQQARQILIQNPLLTKALFQA 58 (395)
Q Consensus 36 qnP~qARqLL~qNPQLAyALfQA 58 (395)
+-.+.||++|.+||.|+..|-..
T Consensus 32 QGre~a~~~L~enpel~~eie~~ 54 (60)
T d1mo6a2 32 QGKENARNFLVENADVADEIEKK 54 (60)
T ss_dssp ESHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCHHHHHHHHHH
Confidence 45789999999999999888654
No 7
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=18.61 E-value=33 Score=23.88 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHHH
Q 040162 18 MSKNQLYEIMTQMKSLI 34 (395)
Q Consensus 18 mpP~QL~ELLsqMK~Li 34 (395)
++.+++.+||++||.+.
T Consensus 86 ls~~ei~dviAYLkt~s 102 (103)
T d1lfma_ 86 KKKGERQDLVAYLKSAT 102 (103)
T ss_dssp CSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 37889999999999874
No 8
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}
Probab=17.91 E-value=46 Score=22.70 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 040162 17 GMSKNQLYEIMTQMKSLIE 35 (395)
Q Consensus 17 smpP~QL~ELLsqMK~Li~ 35 (395)
.|+++|+.+|+++++..++
T Consensus 67 ~Lsd~ei~~v~aYi~~~a~ 85 (88)
T d1f1fa_ 67 RLSPLQIEDVAAYVVDQAE 85 (88)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4889999999999998654
No 9
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=17.76 E-value=69 Score=20.00 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhC
Q 040162 22 QLYEIMTQMKSLIEQNEQQARQILIQN 48 (395)
Q Consensus 22 QL~ELLsqMK~Li~qnP~qARqLL~qN 48 (395)
+..|+|-.-|. +...|++.|..|.-|
T Consensus 6 ewvelmveake-anispeeirkyllln 31 (31)
T d1b0nb_ 6 EWVELMVEAKE-ANISPEEIRKYLLLN 31 (31)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHhcC
Confidence 56788888886 455799999988765
No 10
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=17.41 E-value=22 Score=25.24 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=18.9
Q ss_pred hCHHHHHHHHHhCCchHHHHHHH
Q 040162 36 QNEQQARQILIQNPLLTKALFQA 58 (395)
Q Consensus 36 qnP~qARqLL~qNPQLAyALfQA 58 (395)
+-.+.||++|.+||.|+..|-..
T Consensus 31 QGre~a~~~L~enpel~~eie~~ 53 (59)
T d1xp8a2 31 QGKEKTIAYIAERPEMEQEIRDR 53 (59)
T ss_dssp ESHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCHHHHHHHHHH
Confidence 35789999999999999877543
Done!