BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040163
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1
Length = 303
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 38 EVAVELAKHEFIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTD 97
+++VE+ K ++AV L HP VT DD++ V+ PI +L A+ D +P + +F VL +
Sbjct: 156 KLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRE 215
Query: 98 KSEV 101
+ EV
Sbjct: 216 RHEV 219
>sp|P39721|AIM2_YEAST Protein AIM2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIM2 PE=1 SV=1
Length = 246
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 50 QAVVLLHPSFVTVDDIEAVEV--PIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKI 107
A + HPSFV++++IEA++ PI + AE D I P L EE L D + + +
Sbjct: 148 NAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKD-NHATYQLDL 206
Query: 108 FLKFSHGWTVRYNVE 122
F +HG+ R ++
Sbjct: 207 FSGVAHGFAARGDIS 221
>sp|Q6P7K0|CMBL_XENTR Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl
PE=2 SV=1
Length = 246
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 43 LAKHEFIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVD 102
+ K+ ++A V + V+D + P + AE D + PL + EE L S+VD
Sbjct: 142 MLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVD 201
Query: 103 GYVKIFLKFSHGWTVRYN 120
VK+F K +HG+ R N
Sbjct: 202 FQVKVFPKQTHGFVHRKN 219
>sp|C0ZHY5|TRMB_BREBN tRNA (guanine-N(7)-)-methyltransferase OS=Brevibacillus brevis
(strain 47 / JCM 6285 / NBRC 100599) GN=trmB PE=3 SV=1
Length = 214
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 25 WISRFRVPNADRTEVAVELAKHEFIQAVVLLHP--SFVTVDDIEAVEVPIAVLRAEFDQI 82
W RF N + V + K FI + HP +F+ V+ ++A V AV R E+ I
Sbjct: 30 WKERF--GNNNPIHVEIGCGKGRFINTLAERHPDINFIAVE-LKAEVVLRAVQRTEYKAI 86
Query: 83 SPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115
LA ++ LT+ +I+L FS W
Sbjct: 87 PNLAFVQYDASKLTELFADHEISRIYLNFSDPW 119
>sp|Q5XH09|CMBL_XENLA Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2
SV=1
Length = 246
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 43 LAKHEFIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVD 102
+ K+ ++A V + V+D + P + AE D + PL + E+ L S+VD
Sbjct: 142 MLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVD 201
Query: 103 GYVKIFLKFSHGWTVR 118
+K+F K +HG+ R
Sbjct: 202 FQIKVFPKQTHGFVHR 217
>sp|O05691|THCF_RHOER Non-heme haloperoxidase OS=Rhodococcus erythropolis GN=thcF PE=3
SV=1
Length = 274
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 62 VDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114
DD+ A++VP ++ + DQI P+A + L + +K++ SHG
Sbjct: 207 TDDLRAIDVPTLIMHGDDDQIVPIANSAETAVTLVKNAR----LKVYPGLSHG 255
>sp|A6TJM2|MURC_ALKMQ UDP-N-acetylmuramate--L-alanine ligase OS=Alkaliphilus
metalliredigens (strain QYMF) GN=murC PE=3 SV=1
Length = 460
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 21 PEKIWISRFRVPNADRTEVAVE-LAKHEFIQAVVLLHPSFVTVDDIEAVEV-----PIAV 74
PE+I +P ADR E+ + + K+E AV H T I + P +
Sbjct: 85 PERIRAEELGIPLADRAEMLGQIMKKYEKAIAVAGSHGKTTTTSLISLLMEYSNLDPTIL 144
Query: 75 LRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKF 111
+ E D+I + Q + +T+ E YV+ FLKF
Sbjct: 145 VGGELDEIGGNIKIGQSQHFITEACE---YVESFLKF 178
>sp|P25026|PRXC_PSEPY Non-heme chloroperoxidase OS=Pseudomonas pyrrocinia GN=cpo PE=1
SV=3
Length = 278
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 62 VDDIEAVEVPIAVLRAEFDQISPL--ALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114
+D++++ VP VL E DQI P+ A LK + + +G +K + +SHG
Sbjct: 211 TEDLKSITVPTLVLHGEDDQIVPIADAALKSIKLLQ------NGTLKTYPGYSHG 259
>sp|Q9GV77|FREM2_LYTVA Extracellular matrix protein 3 OS=Lytechinus variegatus GN=ECM3 PE=1
SV=1
Length = 3103
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 15 DPVWAQPEKIW--ISRFRVPNADRTEVAVELAKHEFIQAVVLLHPSFVTVDDIEAVEVPI 72
+P +AQPE++W +S V + T ++L + V P +DI E+PI
Sbjct: 2747 EPTYAQPEQLWQFVSDLSVSDYSGT-YTIQLVPCTTLPNTVYSQPPVCNPEDIITFELPI 2805
Query: 73 AVLRAEFDQIS---PLALLKQFEEVLTDKSEV---DGYVKIFLKFSHGWTVRYNVED 123
F Q+S P E VL K + DG + F G V YN D
Sbjct: 2806 -----RFQQVSDPVPEEYSLNTEFVLVGKESIYLSDGS----MGFGEGSDVAYNPGD 2853
>sp|Q03GC9|TRMB_PEDPA tRNA (guanine-N(7)-)-methyltransferase OS=Pediococcus pentosaceus
(strain ATCC 25745 / 183-1w) GN=trmB PE=3 SV=1
Length = 212
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 19 AQPEKI----------WISRFRVPNADRTEVAVELAKHEFIQAVVLLHPSFVTVD-DIEA 67
A PEKI W RF EV K +FI + +P + + +I+
Sbjct: 15 AHPEKIVEKGQAFKGQWNQRFEKEQPIFIEVGT--GKGQFIINMAKKYPQYNFIGIEIQK 72
Query: 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115
+ IA+ A ++I L L LTD E K+FL FS W
Sbjct: 73 TVIAIALKNALEEEIPNLQFLYADGAELTDYFEDGEVSKVFLNFSDPW 120
>sp|Q4WZ44|NRPS7_ASPFU Nonribosomal peptide synthetase 7 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS7
PE=3 SV=1
Length = 2353
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 35 DRTEVAVELAKHEFIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQISPL 85
DR E H +Q + HPS V+DI + A L + +Q++ L
Sbjct: 1302 DRVESPGGELAHSALQRMAASHPSRTAVEDISGARITYAGLAIKMNQLAGL 1352
>sp|A5GIV0|RECA_SYNPW Protein RecA OS=Synechococcus sp. (strain WH7803) GN=recA PE=3 SV=1
Length = 382
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 9 DYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKHEFIQAVVLLHPSFVTVDDIEAV 68
D ALDPV+A + I V D E+A+E+ A V V VD + A+
Sbjct: 107 DAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAV----DIVVVDSVAAL 162
Query: 69 EVPIAVLRAEFDQI---SPLALLKQFEEVLTDKSEVDGYVKIFL 109
P A + E + S L+ Q +T G IFL
Sbjct: 163 -TPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFL 205
>sp|Q6WNV6|VP3_ROTCC Protein VP3 OS=Rotavirus A (strain Chicken/Ireland/Ch2/1979
G7-Px[x]-Ix-Rx-Cx-M4-Ax-Nx-Tx-Ex-Hx) PE=3 SV=1
Length = 829
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTDK---SEVDGYVKIFLKF 111
++ I +LR+ + + L LL Q+ +LTD + VDGY++ + K
Sbjct: 727 IQNTITILRSVKEDLIALNLLTQYTYMLTDSIYVANVDGYLQFYYKL 773
>sp|A9BCQ0|RECA_PROM4 Protein RecA OS=Prochlorococcus marinus (strain MIT 9211) GN=recA
PE=3 SV=1
Length = 367
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 9 DYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKHEFIQAVVLLHPSFVTVDDIEAV 68
D ALDPV+A + + V D E+A+E+ A V L V VD + A+
Sbjct: 112 DAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSAAVEL----VVVDSVAAL 167
Query: 69 EVPIAVLRAEF-DQI--SPLALLKQFEEVLTDKSEVDGYVKIFLK 110
P A + E D + S L+ Q +T G IFL
Sbjct: 168 -TPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLN 211
>sp|Q0ID00|RECA_SYNS3 Protein RecA OS=Synechococcus sp. (strain CC9311) GN=recA PE=3 SV=1
Length = 382
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 9 DYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKHEFIQAVVLLHPSFVTVDDIEAV 68
D ALDPV+A + I V D E+A+E+ A V V VD + A+
Sbjct: 107 DAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAV----DIVVVDSVAAL 162
Query: 69 EVPIAVLRAEFDQISPLA---LLKQFEEVLTDKSEVDGYVKIFL 109
P A + E ++ A L+ Q +T G IFL
Sbjct: 163 -TPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFL 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,307,365
Number of Sequences: 539616
Number of extensions: 1493428
Number of successful extensions: 4499
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4495
Number of HSP's gapped (non-prelim): 21
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)