Query 040163
Match_columns 123
No_of_seqs 121 out of 1207
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01738 DLH: Dienelactone hyd 99.9 2E-26 4.2E-31 170.3 9.4 112 5-121 77-196 (218)
2 KOG3043 Predicted hydrolase re 99.9 2.3E-26 5E-31 172.2 6.9 114 6-123 102-219 (242)
3 COG0412 Dienelactone hydrolase 99.9 1.4E-23 3E-28 159.0 11.6 110 4-118 90-206 (236)
4 PRK11460 putative hydrolase; P 99.5 6.9E-14 1.5E-18 105.2 10.4 104 8-116 85-194 (232)
5 PF00326 Peptidase_S9: Prolyl 99.5 4.3E-13 9.2E-18 98.4 9.6 108 5-117 43-191 (213)
6 PRK10566 esterase; Provisional 99.4 2.4E-12 5.2E-17 95.8 10.1 106 6-116 87-234 (249)
7 COG1506 DAP2 Dipeptidyl aminop 99.4 1.4E-12 3E-17 110.4 9.8 111 5-120 452-601 (620)
8 PF12695 Abhydrolase_5: Alpha/ 99.4 1.4E-12 3E-17 89.0 8.0 86 20-114 59-145 (145)
9 PF08840 BAAT_C: BAAT / Acyl-C 99.3 8.4E-12 1.8E-16 93.1 9.3 108 9-120 5-168 (213)
10 PRK13604 luxD acyl transferase 99.3 4.6E-11 1E-15 94.0 10.4 105 5-116 90-246 (307)
11 PF02230 Abhydrolase_2: Phosph 99.2 3.2E-10 7E-15 83.9 10.1 85 31-116 110-201 (216)
12 TIGR02821 fghA_ester_D S-formy 99.1 4.6E-10 1E-14 86.0 9.3 85 31-116 143-258 (275)
13 PLN02298 hydrolase, alpha/beta 99.0 3.7E-09 8E-14 82.2 8.9 109 5-116 113-295 (330)
14 PF05448 AXE1: Acetyl xylan es 98.9 3.2E-09 6.9E-14 83.9 7.9 107 5-115 154-304 (320)
15 PRK10162 acetyl esterase; Prov 98.9 1.2E-08 2.7E-13 79.8 9.3 106 6-118 131-294 (318)
16 PLN02442 S-formylglutathione h 98.9 1.6E-08 3.6E-13 78.0 9.7 85 31-116 148-264 (283)
17 PLN02385 hydrolase; alpha/beta 98.8 2.2E-08 4.8E-13 78.7 8.7 49 65-116 275-323 (349)
18 PHA02857 monoglyceride lipase; 98.8 5.5E-08 1.2E-12 73.3 9.9 104 5-116 78-252 (276)
19 PRK10749 lysophospholipase L2; 98.8 8.4E-08 1.8E-12 75.1 10.2 51 66-116 256-308 (330)
20 KOG1455 Lysophospholipase [Lip 98.7 2.3E-08 5E-13 78.4 6.5 109 5-116 108-290 (313)
21 TIGR03611 RutD pyrimidine util 98.7 4.6E-08 1E-12 71.2 7.7 47 65-116 194-240 (257)
22 TIGR03056 bchO_mg_che_rel puta 98.7 1.2E-07 2.5E-12 70.5 9.8 47 65-116 216-262 (278)
23 PRK05077 frsA fermentation/res 98.7 8.8E-08 1.9E-12 77.9 9.7 92 11-111 250-392 (414)
24 COG1647 Esterase/lipase [Gener 98.7 1.2E-07 2.5E-12 71.8 8.4 105 5-116 67-225 (243)
25 COG0400 Predicted esterase [Ge 98.6 2.2E-07 4.9E-12 69.5 8.9 85 30-116 103-191 (207)
26 TIGR02427 protocat_pcaD 3-oxoa 98.6 7.6E-08 1.7E-12 69.2 6.0 47 65-116 189-235 (251)
27 KOG1552 Predicted alpha/beta h 98.6 9E-08 1.9E-12 73.5 6.0 107 4-118 109-237 (258)
28 PRK10673 acyl-CoA esterase; Pr 98.6 2.1E-07 4.6E-12 68.7 7.9 46 66-116 192-237 (255)
29 PRK10115 protease 2; Provision 98.6 2.7E-07 5.8E-12 79.4 8.7 106 5-115 503-654 (686)
30 PLN02652 hydrolase; alpha/beta 98.6 5.7E-07 1.2E-11 72.9 9.9 49 65-116 320-368 (395)
31 TIGR03343 biphenyl_bphD 2-hydr 98.6 4.1E-07 8.9E-12 68.3 8.3 46 65-115 219-264 (282)
32 PF07859 Abhydrolase_3: alpha/ 98.5 2.8E-07 6E-12 67.0 5.9 106 4-116 46-210 (211)
33 PRK11071 esterase YqiA; Provis 98.5 1.1E-06 2.5E-11 64.2 9.1 78 31-117 66-176 (190)
34 PF12697 Abhydrolase_6: Alpha/ 98.5 3.8E-07 8.2E-12 64.3 6.2 100 5-115 51-217 (228)
35 PF12715 Abhydrolase_7: Abhydr 98.4 9.9E-08 2.1E-12 77.0 2.4 99 8-110 208-343 (390)
36 COG2945 Predicted hydrolase of 98.4 7.8E-07 1.7E-11 66.1 6.8 103 7-116 85-190 (210)
37 COG3458 Acetyl esterase (deace 98.4 6E-07 1.3E-11 69.9 5.5 100 6-113 156-299 (321)
38 TIGR02240 PHA_depoly_arom poly 98.4 1.9E-06 4.1E-11 65.2 7.8 45 65-115 203-247 (276)
39 KOG2100 Dipeptidyl aminopeptid 98.4 2.3E-06 5E-11 74.5 9.2 111 7-119 589-731 (755)
40 TIGR01250 pro_imino_pep_2 prol 98.4 4.6E-06 1E-10 61.3 9.6 46 65-116 227-272 (288)
41 PRK14875 acetoin dehydrogenase 98.3 2.1E-06 4.6E-11 67.0 7.9 43 65-115 310-352 (371)
42 TIGR01836 PHA_synth_III_C poly 98.3 4.7E-06 1E-10 65.7 9.5 50 65-117 282-331 (350)
43 TIGR01840 esterase_phb esteras 98.3 3E-06 6.4E-11 62.4 7.4 90 7-100 76-199 (212)
44 PLN02824 hydrolase, alpha/beta 98.3 3.9E-06 8.5E-11 63.9 7.7 47 65-116 230-276 (294)
45 KOG3253 Predicted alpha/beta h 98.3 1.6E-06 3.5E-11 73.5 5.5 86 30-119 254-350 (784)
46 KOG2112 Lysophospholipase [Lip 98.3 5.8E-06 1.2E-10 61.8 7.9 83 32-115 99-189 (206)
47 COG0657 Aes Esterase/lipase [L 98.3 9.8E-06 2.1E-10 62.8 9.6 103 6-116 129-289 (312)
48 TIGR03695 menH_SHCHC 2-succiny 98.2 4.8E-06 1E-10 59.5 7.2 47 65-117 190-236 (251)
49 PRK00870 haloalkane dehalogena 98.1 2.1E-05 4.5E-10 60.3 8.0 49 65-116 235-283 (302)
50 TIGR03100 hydr1_PEP hydrolase, 98.0 3.3E-05 7.2E-10 59.1 8.5 103 5-115 80-255 (274)
51 PF06500 DUF1100: Alpha/beta h 98.0 2.4E-05 5.3E-10 63.9 7.8 79 10-92 245-375 (411)
52 PRK05371 x-prolyl-dipeptidyl a 98.0 6.5E-05 1.4E-09 65.7 10.5 51 64-116 450-500 (767)
53 PLN02511 hydrolase 97.9 3.7E-05 8.1E-10 61.9 7.5 46 65-114 294-339 (388)
54 KOG4391 Predicted alpha/beta h 97.9 6.7E-06 1.5E-10 62.6 2.7 103 7-114 130-263 (300)
55 PF03959 FSH1: Serine hydrolas 97.9 8.7E-05 1.9E-09 55.0 8.5 80 31-115 107-202 (212)
56 PRK10985 putative hydrolase; P 97.9 7.9E-05 1.7E-09 58.2 8.4 48 65-117 251-298 (324)
57 TIGR01738 bioH putative pimelo 97.8 2.7E-05 5.8E-10 55.7 4.6 47 65-116 184-230 (245)
58 PLN02578 hydrolase 97.8 0.00013 2.8E-09 57.7 8.1 46 65-116 292-337 (354)
59 COG3208 GrsT Predicted thioest 97.8 0.00027 5.8E-09 54.2 9.0 46 66-116 173-218 (244)
60 PLN02894 hydrolase, alpha/beta 97.7 0.00031 6.6E-09 56.9 9.3 46 65-115 321-366 (402)
61 PRK10439 enterobactin/ferric e 97.7 0.00021 4.5E-09 58.4 8.2 84 31-117 293-394 (411)
62 PRK10349 carboxylesterase BioH 97.6 7.5E-05 1.6E-09 55.6 4.4 48 64-116 191-238 (256)
63 KOG2281 Dipeptidyl aminopeptid 97.6 0.00032 7E-09 60.3 8.1 112 7-119 707-851 (867)
64 COG3571 Predicted hydrolase of 97.6 0.00078 1.7E-08 49.3 8.5 105 4-118 69-185 (213)
65 PRK00175 metX homoserine O-ace 97.4 0.00033 7.1E-09 56.1 5.8 51 65-116 305-356 (379)
66 PLN02980 2-oxoglutarate decarb 97.4 0.00085 1.9E-08 63.0 9.2 51 65-116 1564-1621(1655)
67 PLN02679 hydrolase, alpha/beta 97.4 0.00029 6.2E-09 56.0 5.2 50 65-115 288-338 (360)
68 PLN02965 Probable pheophorbida 97.4 0.0003 6.5E-09 52.6 4.9 45 67-116 191-235 (255)
69 PRK03592 haloalkane dehalogena 97.3 0.00029 6.2E-09 53.7 4.3 48 65-116 224-271 (295)
70 PRK05855 short chain dehydroge 97.3 0.00056 1.2E-08 56.3 5.6 43 67-115 231-273 (582)
71 PLN00021 chlorophyllase 97.3 0.0024 5.2E-08 50.4 8.9 81 30-114 130-240 (313)
72 PRK07581 hypothetical protein; 97.2 0.00051 1.1E-08 53.6 4.9 46 65-115 271-317 (339)
73 PLN03087 BODYGUARD 1 domain co 97.2 0.00052 1.1E-08 57.3 5.0 45 67-116 416-460 (481)
74 PRK06489 hypothetical protein; 97.2 0.00055 1.2E-08 54.2 4.6 47 65-116 288-340 (360)
75 TIGR01392 homoserO_Ac_trn homo 97.1 0.00094 2E-08 52.6 5.5 51 64-115 283-334 (351)
76 KOG1838 Alpha/beta hydrolase [ 97.1 0.00096 2.1E-08 54.6 5.6 35 7-44 181-216 (409)
77 TIGR01249 pro_imino_pep_1 prol 97.1 0.00084 1.8E-08 51.8 4.9 48 65-117 243-291 (306)
78 PRK06765 homoserine O-acetyltr 97.1 0.0012 2.7E-08 53.5 6.0 51 64-115 318-369 (389)
79 PF00561 Abhydrolase_1: alpha/ 97.1 0.00084 1.8E-08 48.0 4.5 46 65-115 171-216 (230)
80 PF03403 PAF-AH_p_II: Platelet 97.1 0.0039 8.4E-08 50.5 8.6 81 31-115 233-316 (379)
81 KOG4667 Predicted esterase [Li 97.1 0.00065 1.4E-08 51.8 3.5 44 68-116 198-241 (269)
82 KOG2551 Phospholipase/carboxyh 97.0 0.0045 9.8E-08 47.0 8.0 77 31-113 109-201 (230)
83 PF06821 Ser_hydrolase: Serine 97.0 0.0035 7.6E-08 45.4 7.0 78 30-113 59-152 (171)
84 KOG3847 Phospholipase A2 (plat 97.0 0.0026 5.6E-08 50.9 6.7 110 2-115 206-329 (399)
85 TIGR01607 PST-A Plasmodium sub 97.0 0.0015 3.3E-08 51.4 5.1 49 66-117 265-315 (332)
86 COG2267 PldB Lysophospholipase 96.9 0.0014 3.1E-08 51.2 4.4 48 65-115 224-272 (298)
87 PF09752 DUF2048: Uncharacteri 96.8 0.0059 1.3E-07 49.1 7.6 100 4-113 156-327 (348)
88 COG4099 Predicted peptidase [G 96.8 0.0021 4.6E-08 51.1 4.7 95 13-109 256-354 (387)
89 PRK08775 homoserine O-acetyltr 96.8 0.0017 3.8E-08 50.9 4.1 49 64-116 272-321 (343)
90 PF03583 LIP: Secretory lipase 96.7 0.0047 1E-07 48.2 6.0 46 69-115 219-265 (290)
91 PF02273 Acyl_transf_2: Acyl t 96.7 0.014 3.1E-07 45.3 8.3 104 5-115 83-238 (294)
92 PF08386 Abhydrolase_4: TAP-li 96.7 0.0081 1.8E-07 39.9 6.2 46 67-117 32-77 (103)
93 KOG1454 Predicted hydrolase/ac 96.6 0.0036 7.8E-08 49.7 4.8 47 64-115 258-305 (326)
94 PF05728 UPF0227: Uncharacteri 96.6 0.023 5E-07 41.8 8.5 77 31-116 64-173 (187)
95 COG4188 Predicted dienelactone 96.3 0.0062 1.4E-07 49.2 4.6 107 4-113 130-293 (365)
96 PRK03204 haloalkane dehalogena 96.2 0.008 1.7E-07 46.0 4.7 43 69-116 227-270 (286)
97 PLN03084 alpha/beta hydrolase 96.1 0.011 2.4E-07 47.8 5.1 43 67-115 323-365 (383)
98 PF10142 PhoPQ_related: PhoPQ- 96.1 0.02 4.3E-07 46.4 6.4 104 2-116 154-305 (367)
99 TIGR01838 PHA_synth_I poly(R)- 96.0 0.012 2.6E-07 49.7 5.2 48 63-115 409-456 (532)
100 PF05705 DUF829: Eukaryotic pr 96.0 0.014 3E-07 43.6 4.8 54 68-122 177-230 (240)
101 PF10230 DUF2305: Uncharacteri 95.9 0.016 3.4E-07 44.6 5.1 46 69-116 221-266 (266)
102 PF10503 Esterase_phd: Esteras 95.9 0.047 1E-06 41.2 7.5 87 10-97 81-197 (220)
103 PLN02872 triacylglycerol lipas 95.9 0.015 3.3E-07 47.3 5.2 46 65-114 319-366 (395)
104 KOG2984 Predicted hydrolase [G 95.9 0.0063 1.4E-07 46.2 2.4 50 65-119 212-261 (277)
105 TIGR01839 PHA_synth_II poly(R) 95.8 0.018 3.8E-07 49.1 5.0 46 64-114 436-481 (560)
106 TIGR01849 PHB_depoly_PhaZ poly 95.7 0.018 4E-07 47.2 4.7 49 65-113 333-382 (406)
107 PRK11126 2-succinyl-6-hydroxy- 95.6 0.014 3E-07 42.6 3.4 41 65-116 184-224 (242)
108 PRK07868 acyl-CoA synthetase; 95.6 0.021 4.5E-07 51.3 5.1 46 65-115 293-339 (994)
109 PRK04940 hypothetical protein; 95.6 0.095 2.1E-06 38.6 7.6 78 31-116 65-164 (180)
110 COG2382 Fes Enterochelin ester 95.5 0.068 1.5E-06 42.2 7.0 90 23-116 174-282 (299)
111 TIGR03101 hydr2_PEP hydrolase, 95.3 0.027 5.9E-07 43.5 4.3 49 5-57 81-132 (266)
112 COG1073 Hydrolases of the alph 95.3 0.03 6.4E-07 41.4 4.3 52 63-117 225-277 (299)
113 PF00561 Abhydrolase_1: alpha/ 95.1 0.027 5.8E-07 40.1 3.4 47 5-57 29-77 (230)
114 TIGR01838 PHA_synth_I poly(R)- 94.9 0.084 1.8E-06 44.8 6.5 74 8-97 246-328 (532)
115 KOG2237 Predicted serine prote 94.9 0.071 1.5E-06 46.1 6.0 108 4-115 527-684 (712)
116 TIGR00976 /NonD putative hydro 94.9 0.032 6.9E-07 46.9 3.8 46 5-54 77-127 (550)
117 PLN02211 methyl indole-3-aceta 94.4 0.089 1.9E-06 40.1 5.0 41 69-115 211-251 (273)
118 PF11339 DUF3141: Protein of u 94.4 0.059 1.3E-06 45.7 4.3 49 64-113 292-347 (581)
119 KOG4178 Soluble epoxide hydrol 94.2 0.084 1.8E-06 42.1 4.6 47 65-114 254-300 (322)
120 COG0429 Predicted hydrolase of 94.1 0.042 9.1E-07 44.1 2.7 48 65-116 270-318 (345)
121 PF08538 DUF1749: Protein of u 94.0 0.03 6.5E-07 44.3 1.7 54 65-118 228-285 (303)
122 PF06057 VirJ: Bacterial virul 94.0 0.26 5.6E-06 36.7 6.5 97 5-115 49-174 (192)
123 PF02129 Peptidase_S15: X-Pro 93.7 0.087 1.9E-06 40.1 3.7 102 6-114 82-271 (272)
124 PF00975 Thioesterase: Thioest 93.7 0.062 1.3E-06 39.1 2.8 46 70-117 169-214 (229)
125 COG0596 MhpC Predicted hydrola 93.5 0.2 4.3E-06 34.8 5.0 48 65-116 217-264 (282)
126 COG3243 PhaC Poly(3-hydroxyalk 93.2 0.17 3.6E-06 41.9 4.8 45 64-113 325-369 (445)
127 COG2819 Predicted hydrolase of 92.8 0.77 1.7E-05 35.8 7.7 86 31-116 142-246 (264)
128 KOG1515 Arylacetamide deacetyl 92.5 0.32 6.9E-06 39.0 5.4 107 7-120 143-316 (336)
129 PF06028 DUF915: Alpha/beta hy 91.8 0.34 7.5E-06 37.3 4.7 101 11-115 90-237 (255)
130 TIGR01839 PHA_synth_II poly(R) 91.6 0.27 5.9E-06 42.0 4.3 44 7-54 271-323 (560)
131 PF00756 Esterase: Putative es 91.4 0.055 1.2E-06 40.1 -0.1 86 28-115 117-237 (251)
132 PRK11126 2-succinyl-6-hydroxy- 90.6 0.38 8.2E-06 34.9 3.8 44 6-55 52-98 (242)
133 PF12048 DUF3530: Protein of u 90.6 3.6 7.8E-05 32.4 9.5 105 5-115 175-291 (310)
134 COG0627 Predicted esterase [Ge 90.2 0.61 1.3E-05 37.1 4.8 47 68-115 246-294 (316)
135 COG3545 Predicted esterase of 90.2 1.9 4.2E-05 31.8 7.0 68 30-97 63-145 (181)
136 COG1505 Serine proteases of th 90.0 0.53 1.2E-05 40.6 4.6 107 5-116 479-626 (648)
137 COG3509 LpqC Poly(3-hydroxybut 89.7 0.38 8.1E-06 38.2 3.2 43 7-49 125-168 (312)
138 COG1770 PtrB Protease II [Amin 89.2 2.5 5.5E-05 36.9 8.0 106 5-115 506-657 (682)
139 COG2021 MET2 Homoserine acetyl 89.2 0.78 1.7E-05 37.3 4.7 36 65-101 302-337 (368)
140 COG0429 Predicted hydrolase of 88.6 0.63 1.4E-05 37.5 3.8 48 7-58 131-185 (345)
141 PLN02965 Probable pheophorbida 88.5 0.71 1.5E-05 34.3 3.9 45 6-55 57-103 (255)
142 PRK08775 homoserine O-acetyltr 88.4 0.47 1E-05 37.2 3.0 46 5-56 122-170 (343)
143 PF12740 Chlorophyllase2: Chlo 88.3 5.6 0.00012 30.9 8.8 105 6-114 63-205 (259)
144 KOG4409 Predicted hydrolase/ac 88.2 0.92 2E-05 36.8 4.5 44 67-114 299-344 (365)
145 PF05677 DUF818: Chlamydia CHL 87.3 0.53 1.2E-05 38.1 2.7 43 4-46 192-235 (365)
146 PRK03592 haloalkane dehalogena 86.4 0.97 2.1E-05 34.1 3.6 45 6-56 79-125 (295)
147 PLN02872 triacylglycerol lipas 86.0 0.7 1.5E-05 37.7 2.8 37 7-47 144-181 (395)
148 KOG3101 Esterase D [General fu 85.8 0.99 2.1E-05 34.7 3.3 51 65-115 211-262 (283)
149 COG3243 PhaC Poly(3-hydroxyalk 85.8 0.64 1.4E-05 38.6 2.5 36 7-45 164-200 (445)
150 TIGR01738 bioH putative pimelo 85.7 0.84 1.8E-05 32.2 2.8 27 30-56 69-97 (245)
151 cd00707 Pancreat_lipase_like P 85.5 1.3 2.9E-05 34.1 4.0 48 7-58 93-146 (275)
152 PRK07868 acyl-CoA synthetase; 85.3 1.2 2.6E-05 40.2 4.2 25 30-54 145-172 (994)
153 PRK06489 hypothetical protein; 84.1 0.73 1.6E-05 36.4 2.1 26 30-55 158-185 (360)
154 KOG2564 Predicted acetyltransf 84.0 0.95 2.1E-05 36.0 2.6 40 2-45 125-165 (343)
155 TIGR01392 homoserO_Ac_trn homo 83.7 1.1 2.4E-05 35.1 3.0 44 5-55 111-158 (351)
156 TIGR01249 pro_imino_pep_1 prol 82.9 1.1 2.4E-05 34.4 2.6 44 5-54 80-125 (306)
157 COG3150 Predicted esterase [Ge 82.2 4.9 0.00011 29.7 5.5 97 5-116 44-173 (191)
158 PRK00175 metX homoserine O-ace 79.7 2.2 4.7E-05 34.1 3.3 48 5-57 131-180 (379)
159 PLN02211 methyl indole-3-aceta 79.7 3.3 7.1E-05 31.5 4.2 28 30-57 91-120 (273)
160 PRK03204 haloalkane dehalogena 79.6 3.3 7.1E-05 31.5 4.2 25 31-55 106-132 (286)
161 cd00741 Lipase Lipase. Lipase 79.4 2.4 5.1E-05 29.3 3.0 76 5-84 9-98 (153)
162 PLN02679 hydrolase, alpha/beta 79.1 2.9 6.3E-05 33.1 3.8 47 6-58 141-190 (360)
163 COG4757 Predicted alpha/beta h 78.6 2.9 6.3E-05 32.5 3.5 44 65-111 212-255 (281)
164 COG2267 PldB Lysophospholipase 78.4 3.3 7.2E-05 32.3 3.9 52 6-59 89-142 (298)
165 KOG2624 Triglyceride lipase-ch 78.2 3.4 7.4E-05 34.0 4.0 34 64-97 327-360 (403)
166 TIGR01607 PST-A Plasmodium sub 77.9 2 4.4E-05 33.7 2.6 38 5-44 103-160 (332)
167 COG3319 Thioesterase domains o 77.8 1.8 3.9E-05 33.5 2.2 36 6-46 50-85 (257)
168 PF07519 Tannase: Tannase and 77.4 5.5 0.00012 33.3 5.1 54 65-118 349-409 (474)
169 KOG2382 Predicted alpha/beta h 77.2 4.6 9.9E-05 32.3 4.4 45 66-115 250-294 (315)
170 PF11187 DUF2974: Protein of u 74.9 1.6 3.5E-05 32.9 1.3 70 11-80 69-149 (224)
171 PRK10349 carboxylesterase BioH 74.8 4 8.7E-05 30.0 3.4 25 31-55 79-105 (256)
172 PRK01045 ispH 4-hydroxy-3-meth 74.5 11 0.00023 29.9 5.8 15 31-45 9-23 (298)
173 PF05057 DUF676: Putative seri 72.7 3.4 7.3E-05 30.6 2.5 32 5-40 61-92 (217)
174 PRK07581 hypothetical protein; 71.6 3.4 7.5E-05 32.0 2.4 26 30-55 128-155 (339)
175 KOG4178 Soluble epoxide hydrol 70.6 6.1 0.00013 31.7 3.6 46 4-55 97-144 (322)
176 PLN03087 BODYGUARD 1 domain co 69.8 5.7 0.00012 33.4 3.5 27 30-56 278-306 (481)
177 KOG3975 Uncharacterized conser 67.7 8.7 0.00019 30.2 3.8 47 69-119 242-288 (301)
178 PRK06765 homoserine O-acetyltr 67.5 4.1 8.9E-05 33.1 2.1 26 30-55 165-192 (389)
179 TIGR03230 lipo_lipase lipoprot 67.0 9.5 0.00021 31.8 4.2 29 30-58 123-153 (442)
180 PF14851 FAM176: FAM176 family 64.3 2.2 4.8E-05 30.6 -0.0 37 5-42 3-39 (153)
181 PF01764 Lipase_3: Lipase (cla 64.1 7.3 0.00016 25.9 2.6 15 31-45 69-83 (140)
182 KOG2521 Uncharacterized conser 62.8 16 0.00034 29.7 4.6 53 68-121 224-276 (350)
183 TIGR01849 PHB_depoly_PhaZ poly 61.8 7.5 0.00016 32.1 2.6 14 30-43 172-185 (406)
184 PLN03037 lipase class 3 family 60.9 7.5 0.00016 33.2 2.5 39 5-45 299-337 (525)
185 PLN02571 triacylglycerol lipas 57.7 10 0.00022 31.5 2.7 17 29-45 229-245 (413)
186 cd00519 Lipase_3 Lipase (class 55.6 13 0.00028 27.3 2.8 36 6-45 110-147 (229)
187 PRK13656 trans-2-enoyl-CoA red 55.5 1.1E+02 0.0024 25.4 8.4 105 8-121 22-147 (398)
188 KOG4388 Hormone-sensitive lipa 55.2 15 0.00033 32.3 3.4 45 69-116 787-831 (880)
189 PLN02310 triacylglycerol lipas 55.1 12 0.00026 30.9 2.8 15 30-44 213-227 (405)
190 PRK00087 4-hydroxy-3-methylbut 54.6 39 0.00084 29.4 5.9 15 31-45 9-23 (647)
191 PF11144 DUF2920: Protein of u 53.5 43 0.00092 27.8 5.7 36 72-108 296-331 (403)
192 PF07819 PGAP1: PGAP1-like pro 53.5 16 0.00034 27.4 3.0 24 31-54 90-118 (225)
193 PLN02454 triacylglycerol lipas 53.4 11 0.00023 31.4 2.2 39 5-45 207-247 (414)
194 PF06259 Abhydrolase_8: Alpha/ 53.3 76 0.0017 23.1 6.5 51 31-82 114-170 (177)
195 COG4287 PqaA PhoPQ-activated p 52.9 12 0.00026 31.1 2.4 89 23-115 230-371 (507)
196 COG2936 Predicted acyl esteras 52.7 10 0.00023 32.6 2.1 44 7-54 106-154 (563)
197 PF05576 Peptidase_S37: PS-10 49.1 18 0.00039 30.3 2.9 40 69-115 351-390 (448)
198 PF11339 DUF3141: Protein of u 48.7 24 0.00053 30.4 3.7 31 30-60 144-175 (581)
199 COG4947 Uncharacterized protei 48.3 7.9 0.00017 28.9 0.6 43 70-115 174-216 (227)
200 PLN02408 phospholipase A1 47.8 19 0.0004 29.4 2.8 16 30-45 204-219 (365)
201 PLN03084 alpha/beta hydrolase 47.7 28 0.00061 28.2 3.8 48 5-58 182-231 (383)
202 PRK10252 entF enterobactin syn 47.0 19 0.00041 33.0 3.0 34 6-45 1118-1152(1296)
203 COG2021 MET2 Homoserine acetyl 46.1 16 0.00034 29.9 2.1 23 23-45 142-166 (368)
204 PF01691 Adeno_E1B_19K: Adenov 45.6 20 0.00043 25.2 2.3 36 1-40 1-37 (134)
205 TIGR00216 ispH_lytB (E)-4-hydr 45.1 12 0.00026 29.4 1.2 15 31-45 8-22 (280)
206 PLN02761 lipase class 3 family 44.9 21 0.00045 30.6 2.7 15 30-44 298-312 (527)
207 PLN02324 triacylglycerol lipas 43.5 22 0.00049 29.5 2.7 15 31-45 220-234 (415)
208 PF01083 Cutinase: Cutinase; 43.3 32 0.00069 24.8 3.2 53 31-83 86-149 (179)
209 PRK12360 4-hydroxy-3-methylbut 42.6 14 0.0003 29.1 1.2 15 31-45 9-23 (281)
210 PF06850 PHB_depo_C: PHB de-po 42.5 27 0.00059 26.2 2.7 61 50-113 117-178 (202)
211 PF06342 DUF1057: Alpha/beta h 41.1 30 0.00066 27.5 2.9 33 65-97 208-240 (297)
212 cd00312 Esterase_lipase Estera 40.8 23 0.0005 29.0 2.4 36 6-45 153-195 (493)
213 PF05277 DUF726: Protein of un 40.3 49 0.0011 26.8 4.1 52 31-82 225-288 (345)
214 PF02401 LYTB: LytB protein; 40.3 13 0.00028 29.2 0.8 80 31-113 7-122 (281)
215 PRK13276 cell wall biosynthesi 37.3 14 0.0003 28.2 0.5 19 27-45 23-41 (224)
216 PLN02733 phosphatidylcholine-s 37.0 35 0.00076 28.4 2.9 16 30-45 166-181 (440)
217 KOG1515 Arylacetamide deacetyl 34.8 64 0.0014 25.9 4.0 17 66-82 195-213 (336)
218 PF02244 Propep_M14: Carboxype 34.7 21 0.00046 21.5 1.0 25 82-107 39-63 (74)
219 KOG4627 Kynurenine formamidase 34.0 49 0.0011 25.5 3.0 77 32-113 142-246 (270)
220 PLN02802 triacylglycerol lipas 33.4 41 0.00088 28.7 2.7 16 30-45 334-349 (509)
221 COG4757 Predicted alpha/beta h 32.8 21 0.00045 27.9 0.9 37 8-47 89-126 (281)
222 KOG1454 Predicted hydrolase/ac 32.7 26 0.00057 27.7 1.4 24 30-53 132-157 (326)
223 PF11144 DUF2920: Protein of u 32.6 52 0.0011 27.3 3.1 15 31-45 189-203 (403)
224 PF07082 DUF1350: Protein of u 32.4 49 0.0011 25.7 2.8 108 3-115 65-205 (250)
225 KOG2541 Palmitoyl protein thio 32.2 1E+02 0.0022 24.5 4.5 46 70-116 24-70 (296)
226 PF11288 DUF3089: Protein of u 31.7 35 0.00075 25.6 1.9 37 7-45 77-114 (207)
227 PF00151 Lipase: Lipase; Inte 31.3 46 0.001 26.5 2.6 28 31-58 155-186 (331)
228 PLN02753 triacylglycerol lipas 31.0 46 0.001 28.6 2.7 15 30-44 316-330 (531)
229 PF13709 DUF4159: Domain of un 29.9 1.1E+02 0.0024 22.7 4.3 30 68-97 52-81 (207)
230 PF12146 Hydrolase_4: Putative 28.6 1.5E+02 0.0032 18.3 4.5 44 68-117 15-58 (79)
231 PLN02847 triacylglycerol lipas 28.6 1.3E+02 0.0027 26.6 4.9 64 31-95 256-329 (633)
232 cd03131 GATase1_HTS Type 1 glu 27.6 32 0.00069 25.1 1.0 32 8-45 85-116 (175)
233 KOG4631 NADH:ubiquinone oxidor 27.6 31 0.00066 22.8 0.8 36 87-123 24-63 (100)
234 cd00578 L-fuc_L-ara-isomerases 27.5 3.5E+02 0.0075 22.2 8.6 65 42-107 57-133 (452)
235 PF09356 Phage_BR0599: Phage c 27.1 29 0.00062 22.0 0.7 18 101-118 43-61 (80)
236 PLN02719 triacylglycerol lipas 27.0 59 0.0013 27.9 2.6 15 30-44 302-316 (518)
237 TIGR01916 F420_cofE F420-0:gam 26.4 2.1E+02 0.0046 22.1 5.4 46 66-115 110-155 (243)
238 COG2846 Regulator of cell morp 26.2 33 0.00071 26.0 0.9 19 27-45 23-41 (221)
239 PRK05368 homoserine O-succinyl 25.6 56 0.0012 25.9 2.1 31 8-44 122-152 (302)
240 COG1362 LAP4 Aspartyl aminopep 25.4 1.7E+02 0.0038 24.5 5.0 58 49-107 316-377 (437)
241 PF04405 ScdA_N: Domain of Unk 25.3 25 0.00053 20.8 0.1 19 27-45 20-38 (56)
242 smart00824 PKS_TE Thioesterase 25.1 37 0.00081 23.2 1.0 16 30-45 68-83 (212)
243 PRK08272 enoyl-CoA hydratase; 25.0 42 0.0009 26.1 1.3 15 32-46 136-150 (302)
244 PF10605 3HBOH: 3HB-oligomer h 24.6 67 0.0015 28.3 2.6 32 66-97 551-583 (690)
245 TIGR03652 FeS_repair_RIC iron- 24.4 26 0.00057 26.0 0.1 19 27-45 16-34 (216)
246 PRK02813 putative aminopeptida 24.1 3.1E+02 0.0067 22.7 6.3 60 49-109 308-371 (428)
247 PRK03580 carnitinyl-CoA dehydr 24.0 47 0.001 25.1 1.5 15 32-46 103-117 (261)
248 PRK08150 enoyl-CoA hydratase; 23.8 50 0.0011 25.0 1.6 15 32-46 101-115 (255)
249 PF08250 Sperm_act_pep: Sperm- 23.6 27 0.00059 13.7 0.0 6 32-37 1-6 (10)
250 PRK09245 enoyl-CoA hydratase; 23.2 52 0.0011 24.9 1.5 14 32-45 112-125 (266)
251 TIGR00976 /NonD putative hydro 23.0 1.1E+02 0.0023 25.9 3.5 33 63-96 226-258 (550)
252 TIGR03210 badI 2-ketocyclohexa 22.8 51 0.0011 24.9 1.4 14 32-45 103-116 (256)
253 PRK07468 enoyl-CoA hydratase; 22.6 52 0.0011 24.9 1.5 15 32-46 109-123 (262)
254 PLN02606 palmitoyl-protein thi 22.5 2.8E+02 0.006 22.2 5.5 46 69-115 26-72 (306)
255 PF08497 Radical_SAM_N: Radica 22.4 1.1E+02 0.0024 24.4 3.2 58 18-75 14-73 (302)
256 PRK13371 4-hydroxy-3-methylbut 22.4 48 0.001 27.3 1.2 41 5-45 13-60 (387)
257 PRK06494 enoyl-CoA hydratase; 22.1 56 0.0012 24.7 1.5 15 32-46 103-117 (259)
258 PTZ00371 aspartyl aminopeptida 22.1 4.1E+02 0.0089 22.3 6.7 60 49-109 335-398 (465)
259 COG0244 RplJ Ribosomal protein 22.0 2.6E+02 0.0056 20.2 4.9 44 65-111 73-117 (175)
260 PLN02213 sinapoylglucose-malat 21.7 96 0.0021 24.3 2.8 29 69-97 233-261 (319)
261 PF04301 DUF452: Protein of un 21.6 1.2E+02 0.0027 22.8 3.2 28 31-58 62-89 (213)
262 PRK03661 hypothetical protein; 21.5 2.6E+02 0.0056 20.0 4.8 88 11-107 11-102 (164)
263 PF07224 Chlorophyllase: Chlor 21.0 92 0.002 24.8 2.5 92 6-97 92-217 (307)
264 PRK05809 3-hydroxybutyryl-CoA 20.6 63 0.0014 24.3 1.5 15 32-46 106-120 (260)
265 PF00378 ECH: Enoyl-CoA hydrat 20.6 1.5E+02 0.0032 21.9 3.6 39 6-46 75-113 (245)
266 PRK05980 enoyl-CoA hydratase; 20.4 56 0.0012 24.6 1.2 14 32-45 109-122 (260)
267 PRK06210 enoyl-CoA hydratase; 20.3 60 0.0013 24.6 1.4 15 32-46 117-131 (272)
268 PRK10673 acyl-CoA esterase; Pr 20.3 3.3E+02 0.0071 19.4 5.5 43 69-118 16-58 (255)
269 PRK09076 enoyl-CoA hydratase; 20.3 66 0.0014 24.3 1.6 15 32-46 104-118 (258)
270 PRK08788 enoyl-CoA hydratase; 20.1 63 0.0014 25.2 1.5 15 32-46 130-144 (287)
271 PRK12478 enoyl-CoA hydratase; 20.1 61 0.0013 25.2 1.4 14 32-45 121-134 (298)
No 1
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.94 E-value=2e-26 Score=170.33 Aligned_cols=112 Identities=27% Similarity=0.311 Sum_probs=90.6
Q ss_pred hhHHHHHHhchhhhcCCC----ceeecccccceeccHHHHHHhhcCC-CccEEEEecC-CCCC--ccccccCCCcEEEEe
Q 040163 5 TLIKDYIQALDPVWAQPE----KIWISRFRVPNADRTEVAVELAKHE-FIQAVVLLHP-SFVT--VDDIEAVEVPIAVLR 76 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~----~~~~~~~~vGfC~GG~~a~~~a~~~-~v~A~v~~hp-s~~~--~~d~~~I~~Pvl~~~ 76 (123)
...+|+.+++++|+++++ |+++ |||||||+++++++... .++|+|++|| +... .++..++++|+++++
T Consensus 77 ~~~~~~~aa~~~l~~~~~~~~~kig~----vGfc~GG~~a~~~a~~~~~~~a~v~~yg~~~~~~~~~~~~~~~~P~l~~~ 152 (218)
T PF01738_consen 77 QVAADLQAAVDYLRAQPEVDPGKIGV----VGFCWGGKLALLLAARDPRVDAAVSFYGGSPPPPPLEDAPKIKAPVLILF 152 (218)
T ss_dssp HHHHHHHHHHHHHHCTTTCEEEEEEE----EEETHHHHHHHHHHCCTTTSSEEEEES-SSSGGGHHHHGGG--S-EEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEE----EEEecchHHhhhhhhhccccceEEEEcCCCCCCcchhhhcccCCCEeecC
Confidence 467899999999999993 5555 88899999999998765 8999999999 3333 367899999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCCCC
Q 040163 77 AEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRYNV 121 (123)
Q Consensus 77 g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~~~ 121 (123)
|++|+.+|.+.++++++.|++ .++++++++|||+.|||+.+.+.
T Consensus 153 g~~D~~~~~~~~~~~~~~l~~-~~~~~~~~~y~ga~HgF~~~~~~ 196 (218)
T PF01738_consen 153 GENDPFFPPEEVEALEEALKA-AGVDVEVHVYPGAGHGFANPSRP 196 (218)
T ss_dssp ETT-TTS-HHHHHHHHHHHHC-TTTTEEEEEETT--TTTTSTTST
T ss_pred ccCCCCCChHHHHHHHHHHHh-cCCcEEEEECCCCcccccCCCCc
Confidence 999999999999999999988 48899999999999999887764
No 2
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.93 E-value=2.3e-26 Score=172.21 Aligned_cols=114 Identities=32% Similarity=0.403 Sum_probs=101.8
Q ss_pred hHHHHHHhchhhhcCC--CceeecccccceeccHHHHHHhhcC-CCccEEEEecCCCCCccccccCCCcEEEEecCCCCC
Q 040163 6 LIKDYIQALDPVWAQP--EKIWISRFRVPNADRTEVAVELAKH-EFIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQI 82 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~--~~~~~~~~~vGfC~GG~~a~~~a~~-~~v~A~v~~hps~~~~~d~~~I~~Pvl~~~g~~D~~ 82 (123)
..+|+.+-+.+|+++. .+||+ +||||||+++..+... +.++|+|++|||+++.+|+.++++|+++++++.|+.
T Consensus 102 ~~~~i~~v~k~lk~~g~~kkIGv----~GfCwGak~vv~~~~~~~~f~a~v~~hps~~d~~D~~~vk~Pilfl~ae~D~~ 177 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHGDSKKIGV----VGFCWGAKVVVTLSAKDPEFDAGVSFHPSFVDSADIANVKAPILFLFAELDED 177 (242)
T ss_pred chhHHHHHHHHHHHcCCcceeeE----EEEeecceEEEEeeccchhheeeeEecCCcCChhHHhcCCCCEEEEeeccccc
Confidence 4578889999999766 37777 8889999999887654 589999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc-CCCCCC
Q 040163 83 SPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV-RYNVED 123 (123)
Q Consensus 83 ~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~-r~~~~d 123 (123)
+|++.+.++++.|++++.+.+++++|||..|||.. |+|.++
T Consensus 178 ~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~ 219 (242)
T KOG3043|consen 178 VPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISS 219 (242)
T ss_pred CCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCC
Confidence 99999999999999987778899999999999975 787763
No 3
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.4e-23 Score=158.99 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=98.5
Q ss_pred hhhHHHHHHhchhhhcCCC----ceeecccccceeccHHHHHHhhcCC-CccEEEEecCCCCC--ccccccCCCcEEEEe
Q 040163 4 LTLIKDYIQALDPVWAQPE----KIWISRFRVPNADRTEVAVELAKHE-FIQAVVLLHPSFVT--VDDIEAVEVPIAVLR 76 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~~~----~~~~~~~~vGfC~GG~~a~~~a~~~-~v~A~v~~hps~~~--~~d~~~I~~Pvl~~~ 76 (123)
-+.++|+.+++++|..+|. +|++ |||||||+++++++... .++|++++||+.+. ..+..++++|+++++
T Consensus 90 ~~~~~d~~a~~~~L~~~~~~~~~~ig~----~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~~~~~~~~~~~~~~pvl~~~ 165 (236)
T COG0412 90 AEVLADIDAALDYLARQPQVDPKRIGV----VGFCMGGGLALLAATRAPEVKAAVAFYGGLIADDTADAPKIKVPVLLHL 165 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEE----EEEcccHHHHHHhhcccCCccEEEEecCCCCCCcccccccccCcEEEEe
Confidence 3678999999999999983 5555 88899999999998875 79999999999884 356779999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccC
Q 040163 77 AEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVR 118 (123)
Q Consensus 77 g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r 118 (123)
++.|+.+|.+..+.+++++.+ .++.+++++|+|+.|||+..
T Consensus 166 ~~~D~~~p~~~~~~~~~~~~~-~~~~~~~~~y~ga~H~F~~~ 206 (236)
T COG0412 166 AGEDPYIPAADVDALAAALED-AGVKVDLEIYPGAGHGFAND 206 (236)
T ss_pred cccCCCCChhHHHHHHHHHHh-cCCCeeEEEeCCCccccccC
Confidence 999999999999999999998 46789999999999999865
No 4
>PRK11460 putative hydrolase; Provisional
Probab=99.54 E-value=6.9e-14 Score=105.16 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=78.1
Q ss_pred HHHHHhchhhhcCC----CceeecccccceeccHHHHHHhhc-CCC-ccEEEEecCCCCCccccccCCCcEEEEecCCCC
Q 040163 8 KDYIQALDPVWAQP----EKIWISRFRVPNADRTEVAVELAK-HEF-IQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQ 81 (123)
Q Consensus 8 ~d~~~~~~~l~~~~----~~~~~~~~~vGfC~GG~~a~~~a~-~~~-v~A~v~~hps~~~~~d~~~I~~Pvl~~~g~~D~ 81 (123)
+.+.+.++++..+. +++.+ +|||+||.+++.++. .+. +.+++.+.+...........+.|+++++|++|+
T Consensus 85 ~~l~~~i~~~~~~~~~~~~~i~l----~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~~~~~~~~~~pvli~hG~~D~ 160 (232)
T PRK11460 85 PTFIETVRYWQQQSGVGASATAL----IGFSQGAIMALEAVKAEPGLAGRVIAFSGRYASLPETAPTATTIHLIHGGEDP 160 (232)
T ss_pred HHHHHHHHHHHHhcCCChhhEEE----EEECHHHHHHHHHHHhCCCcceEEEEeccccccccccccCCCcEEEEecCCCC
Confidence 34445555554442 24444 788999999998764 444 455666766543333344578999999999999
Q ss_pred CCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 82 ISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 82 ~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
++|.+..+++.+.|++ .+.++++++||+++|+|.
T Consensus 161 vvp~~~~~~~~~~L~~-~g~~~~~~~~~~~gH~i~ 194 (232)
T PRK11460 161 VIDVAHAVAAQEALIS-LGGDVTLDIVEDLGHAID 194 (232)
T ss_pred ccCHHHHHHHHHHHHH-CCCCeEEEEECCCCCCCC
Confidence 9999999999999998 578899999999999995
No 5
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.47 E-value=4.3e-13 Score=98.42 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=86.7
Q ss_pred hhHHHHHHhchhhhcCC----CceeecccccceeccHHHHHHhhc-C-CCccEEEEecCCC--C---------C------
Q 040163 5 TLIKDYIQALDPVWAQP----EKIWISRFRVPNADRTEVAVELAK-H-EFIQAVVLLHPSF--V---------T------ 61 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~----~~~~~~~~~vGfC~GG~~a~~~a~-~-~~v~A~v~~hps~--~---------~------ 61 (123)
.-++|+.+++++|.+++ +|+++ +|+|+||.+++.++. . +.++|+++..|.. . .
T Consensus 43 ~~~~D~~~~i~~l~~~~~iD~~ri~i----~G~S~GG~~a~~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~ 118 (213)
T PF00326_consen 43 ADVDDVVAAIEYLIKQYYIDPDRIGI----MGHSYGGYLALLAATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLE 118 (213)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEE----EEETHHHHHHHHHHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHH
T ss_pred cchhhHHHHHHHHhccccccceeEEE----Ecccccccccchhhcccceeeeeeeccceecchhcccccccccccccccc
Confidence 46899999999999876 35555 788999999998765 4 4678888866521 0 0
Q ss_pred ---c-------------ccccc--CCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 62 ---V-------------DDIEA--VEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 62 ---~-------------~d~~~--I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
. ..+.+ ++.|+|+++|++|..+|+++..++.++|++ .++++++.+||+++|+|..
T Consensus 119 ~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~-~g~~~~~~~~p~~gH~~~~ 191 (213)
T PF00326_consen 119 YGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPSQSLRLYNALRK-AGKPVELLIFPGEGHGFGN 191 (213)
T ss_dssp HSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTHHHHHHHHHHHH-TTSSEEEEEETT-SSSTTS
T ss_pred cCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHHHHHHHHHHHHh-cCCCEEEEEcCcCCCCCCC
Confidence 0 12455 889999999999999999999999999998 5889999999999999864
No 6
>PRK10566 esterase; Provisional
Probab=99.40 E-value=2.4e-12 Score=95.80 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=79.3
Q ss_pred hHHHHHHhchhhhcCC----CceeecccccceeccHHHHHHhhc-CCCccEEEEecCCCC---------C----------
Q 040163 6 LIKDYIQALDPVWAQP----EKIWISRFRVPNADRTEVAVELAK-HEFIQAVVLLHPSFV---------T---------- 61 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~----~~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~~hps~~---------~---------- 61 (123)
-++|+.+++++++.++ +++.+ +|+|+||.+++.++. .+.+++.+...++.. .
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~i~v----~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (249)
T PRK10566 87 NMQEFPTLRAAIREEGWLLDDRLAV----GGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLIPETAAQQ 162 (249)
T ss_pred HHHHHHHHHHHHHhcCCcCccceeE----EeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhcccccccccccH
Confidence 3577778888887654 35555 789999999998865 566776655432210 0
Q ss_pred ---------------ccccccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCC--CeEEEEeCCCCeeec
Q 040163 62 ---------------VDDIEAV-EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEV--DGYVKIFLKFSHGWT 116 (123)
Q Consensus 62 ---------------~~d~~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~--~~~~~vYpG~~HGF~ 116 (123)
.+.+.++ ++|+|+++|++|+++|+++.+++.+.++.+ +. ..++++|+|++|+|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~H~~~ 234 (249)
T PRK10566 163 AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRER-GLDKNLTCLWEPGVRHRIT 234 (249)
T ss_pred HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhc-CCCcceEEEecCCCCCccC
Confidence 0123455 699999999999999999999999999874 54 468899999999984
No 7
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=110.43 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=91.9
Q ss_pred hhHHHHHHhchhhhcCCC----ceeecccccceeccHHHHHHhhc-CCCccEEEEecCCC--C------C------c---
Q 040163 5 TLIKDYIQALDPVWAQPE----KIWISRFRVPNADRTEVAVELAK-HEFIQAVVLLHPSF--V------T------V--- 62 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~----~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~~hps~--~------~------~--- 62 (123)
..++|+.+++++|..+|. |++| .|+|+||-.++..+. .+.++|+++.++.- + + .
T Consensus 452 ~~~~D~~~~~~~l~~~~~~d~~ri~i----~G~SyGGymtl~~~~~~~~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (620)
T COG1506 452 VDLEDLIAAVDALVKLPLVDPERIGI----TGGSYGGYMTLLAATKTPRFKAAVAVAGGVDWLLYFGESTEGLRFDPEEN 527 (620)
T ss_pred ccHHHHHHHHHHHHhCCCcChHHeEE----eccChHHHHHHHHHhcCchhheEEeccCcchhhhhccccchhhcCCHHHh
Confidence 367999999999988884 5556 577999999988765 56799999987730 0 0 0
Q ss_pred -----------------cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCCC
Q 040163 63 -----------------DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRYN 120 (123)
Q Consensus 63 -----------------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~~ 120 (123)
-.+.+|++|+|++||++|..+|.++..++.++|+. .++++++++||+.+|+|..+.|
T Consensus 528 ~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~-~g~~~~~~~~p~e~H~~~~~~~ 601 (620)
T COG1506 528 GGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKR-KGKPVELVVFPDEGHGFSRPEN 601 (620)
T ss_pred CCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHH-cCceEEEEEeCCCCcCCCCchh
Confidence 12577999999999999999999999999999999 6899999999999999977543
No 8
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.40 E-value=1.4e-12 Score=89.01 Aligned_cols=86 Identities=23% Similarity=0.421 Sum_probs=71.3
Q ss_pred CCCceeecccccceeccHHHHHHhhc-CCCccEEEEecCCCCCccccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhc
Q 040163 20 QPEKIWISRFRVPNADRTEVAVELAK-HEFIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDK 98 (123)
Q Consensus 20 ~~~~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~~hps~~~~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~ 98 (123)
.++++.+ +|||+||.+++.++. .+.+++.+...| +.+.+++.+.+.|+++++|++|+.+|.++.+++.+.++.
T Consensus 59 ~~~~i~l----~G~S~Gg~~a~~~~~~~~~v~~~v~~~~-~~~~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~- 132 (145)
T PF12695_consen 59 DPDRIIL----IGHSMGGAIAANLAARNPRVKAVVLLSP-YPDSEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPG- 132 (145)
T ss_dssp TCCEEEE----EEETHHHHHHHHHHHHSTTESEEEEESE-SSGCHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCS-
T ss_pred CCCcEEE----EEEccCcHHHHHHhhhccceeEEEEecC-ccchhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCC-
Confidence 4456655 788999999999876 478999999877 444678899999999999999999999999998888862
Q ss_pred CCCCeEEEEeCCCCee
Q 040163 99 SEVDGYVKIFLKFSHG 114 (123)
Q Consensus 99 ~~~~~~~~vYpG~~HG 114 (123)
+.++.+++|++|+
T Consensus 133 ---~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 133 ---PKELYIIPGAGHF 145 (145)
T ss_dssp ---SEEEEEETTS-TT
T ss_pred ---CcEEEEeCCCcCc
Confidence 7899999999995
No 9
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.34 E-value=8.4e-12 Score=93.11 Aligned_cols=108 Identities=30% Similarity=0.285 Sum_probs=72.8
Q ss_pred HHHHhchhhhcCCC----ceeecccccceeccHHHHHHhhc-CCCccEEEEecCCCCC----------------------
Q 040163 9 DYIQALDPVWAQPE----KIWISRFRVPNADRTEVAVELAK-HEFIQAVVLLHPSFVT---------------------- 61 (123)
Q Consensus 9 d~~~~~~~l~~~~~----~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~~hps~~~---------------------- 61 (123)
=+..|+++|+++|+ +|++ +|-|.||-+|+.+|+ .+.|+|+|+.-||...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi----~G~SkGaelALllAs~~~~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~ 80 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGI----IGISKGAELALLLASRFPQISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDIS 80 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEE----EEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEETTE--EE----B-GG
T ss_pred HHHHHHHHHHhCCCCCCCCEEE----EEECHHHHHHHHHHhcCCCccEEEEeCCceeEecchhcccCCCccCCcCCcChh
Confidence 35678999999985 5666 777999999999987 4789999986654110
Q ss_pred -------------------c----c----ccccCCCcEEEEecCCCCCCCHHH-HHHHHHHHhhcCCC-CeEEEEeCCCC
Q 040163 62 -------------------V----D----DIEAVEVPIAVLRAEFDQISPLAL-LKQFEEVLTDKSEV-DGYVKIFLKFS 112 (123)
Q Consensus 62 -------------------~----~----d~~~I~~Pvl~~~g~~D~~~p~e~-~~~~~~~l~~~~~~-~~~~~vYpG~~ 112 (123)
. + .+++|++|+|++.|++|.+.|... .+.+.+.|+++... .+++..||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aG 160 (213)
T PF08840_consen 81 KFSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAG 160 (213)
T ss_dssp G-EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-
T ss_pred hceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCC
Confidence 0 1 167899999999999999999774 45788888885333 57889999999
Q ss_pred eeeccCCC
Q 040163 113 HGWTVRYN 120 (123)
Q Consensus 113 HGF~~r~~ 120 (123)
|-+..++-
T Consensus 161 H~i~~Py~ 168 (213)
T PF08840_consen 161 HLIEPPYF 168 (213)
T ss_dssp S---STT-
T ss_pred ceecCCCC
Confidence 99976654
No 10
>PRK13604 luxD acyl transferase; Provisional
Probab=99.27 E-value=4.6e-11 Score=93.96 Aligned_cols=105 Identities=8% Similarity=0.081 Sum_probs=79.8
Q ss_pred hhHHHHHHhchhhhcCCC-ceeecccccceeccHHHHHHhhcCCCccEEEEecCCC------------------------
Q 040163 5 TLIKDYIQALDPVWAQPE-KIWISRFRVPNADRTEVAVELAKHEFIQAVVLLHPSF------------------------ 59 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~-~~~~~~~~vGfC~GG~~a~~~a~~~~v~A~v~~hps~------------------------ 59 (123)
....|+.++++|++.+.. ++++ +|+||||..++..|....+++.+.--|..
T Consensus 90 ~g~~Dl~aaid~lk~~~~~~I~L----iG~SmGgava~~~A~~~~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~lp~ 165 (307)
T PRK13604 90 IGKNSLLTVVDWLNTRGINNLGL----IAASLSARIAYEVINEIDLSFLITAVGVVNLRDTLERALGYDYLSLPIDELPE 165 (307)
T ss_pred ccHHHHHHHHHHHHhcCCCceEE----EEECHHHHHHHHHhcCCCCCEEEEcCCcccHHHHHHHhhhcccccCccccccc
Confidence 357899999999997642 5444 78899999998777655566554421110
Q ss_pred --------C------------C-c------cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCC
Q 040163 60 --------V------------T-V------DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFS 112 (123)
Q Consensus 60 --------~------------~-~------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~ 112 (123)
+ . . +.+.+++.|+|++||.+|.++|.+..+++.+.++. .+.++++|||+.
T Consensus 166 ~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s---~~kkl~~i~Ga~ 242 (307)
T PRK13604 166 DLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS---EQCKLYSLIGSS 242 (307)
T ss_pred ccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc---CCcEEEEeCCCc
Confidence 0 0 0 22556899999999999999999999999998764 267999999999
Q ss_pred eeec
Q 040163 113 HGWT 116 (123)
Q Consensus 113 HGF~ 116 (123)
|.|.
T Consensus 243 H~l~ 246 (307)
T PRK13604 243 HDLG 246 (307)
T ss_pred cccC
Confidence 9985
No 11
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.17 E-value=3.2e-10 Score=83.86 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=62.9
Q ss_pred cceeccHHHHHHhhc--CCCccEEEEecCCCCCc----cccccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCe
Q 040163 31 VPNADRTEVAVELAK--HEFIQAVVLLHPSFVTV----DDIEAV-EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDG 103 (123)
Q Consensus 31 vGfC~GG~~a~~~a~--~~~v~A~v~~hps~~~~----~d~~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~ 103 (123)
.|||.||.+++.++. ...+.++++..+.+... +..... +.|+++.+|.+|+++|.+..++..+.|++ .+.+.
T Consensus 110 ~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~-~~~~v 188 (216)
T PF02230_consen 110 GGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESELEDRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKA-AGANV 188 (216)
T ss_dssp EEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCCHCCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHC-TT-GE
T ss_pred hhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccccccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHh-cCCCE
Confidence 688999999999874 34788888887665432 112222 68999999999999999999999999998 46789
Q ss_pred EEEEeCCCCeeec
Q 040163 104 YVKIFLKFSHGWT 116 (123)
Q Consensus 104 ~~~vYpG~~HGF~ 116 (123)
+++.|||.+|...
T Consensus 189 ~~~~~~g~gH~i~ 201 (216)
T PF02230_consen 189 EFHEYPGGGHEIS 201 (216)
T ss_dssp EEEEETT-SSS--
T ss_pred EEEEcCCCCCCCC
Confidence 9999999999863
No 12
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.12 E-value=4.6e-10 Score=85.98 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=65.1
Q ss_pred cceeccHHHHHHhhcC--CCccEEEEecCCC----CC-------------ccc---------c--ccCCCcEEEEecCCC
Q 040163 31 VPNADRTEVAVELAKH--EFIQAVVLLHPSF----VT-------------VDD---------I--EAVEVPIAVLRAEFD 80 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--~~v~A~v~~hps~----~~-------------~~d---------~--~~I~~Pvl~~~g~~D 80 (123)
+|+||||.+++.++.. ..++++++.-|.. .. .++ . .....|+++.+|++|
T Consensus 143 ~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D 222 (275)
T TIGR02821 143 TGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTAD 222 (275)
T ss_pred EEEChhHHHHHHHHHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCC
Confidence 7889999999998753 4577776644321 00 000 0 125689999999999
Q ss_pred CCCCH-HHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 81 QISPL-ALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 81 ~~~p~-e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|. ++...+.+.|++ .++++++.+|||+.|+|.
T Consensus 223 ~~v~~~~~~~~~~~~l~~-~g~~v~~~~~~g~~H~f~ 258 (275)
T TIGR02821 223 QFLDEQLRPDAFEQACRA-AGQALTLRRQAGYDHSYY 258 (275)
T ss_pred cccCccccHHHHHHHHHH-cCCCeEEEEeCCCCccch
Confidence 99999 678899999998 589999999999999995
No 13
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=98.97 E-value=3.7e-09 Score=82.18 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=77.1
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc-CC-CccEEEEecCCC-----------------------
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK-HE-FIQAVVLLHPSF----------------------- 59 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~-~~-~v~A~v~~hps~----------------------- 59 (123)
.+.+|+.+++++++.....-+..-+.+|.||||.+++.++. .+ .|++.+..-|..
T Consensus 113 ~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (330)
T PLN02298 113 LVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPIPQILTFVARFL 192 (330)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHHHHHHHHHHHHC
Confidence 35789999999997643211112245899999999998775 33 477666433210
Q ss_pred -----------CC--------------------------------------ccccccCCCcEEEEecCCCCCCCHHHHHH
Q 040163 60 -----------VT--------------------------------------VDDIEAVEVPIAVLRAEFDQISPLALLKQ 90 (123)
Q Consensus 60 -----------~~--------------------------------------~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~ 90 (123)
+. .+.+.+|++|+|+++|++|+++|++..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp~~~~~~ 272 (330)
T PLN02298 193 PTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTDPDVSRA 272 (330)
T ss_pred CCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCCHHHHHH
Confidence 00 01134688999999999999999999888
Q ss_pred HHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 91 FEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 91 ~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+.+.. .+.++++|+|+.|...
T Consensus 273 l~~~i~~---~~~~l~~~~~a~H~~~ 295 (330)
T PLN02298 273 LYEEAKS---EDKTIKIYDGMMHSLL 295 (330)
T ss_pred HHHHhcc---CCceEEEcCCcEeeee
Confidence 8877753 2568999999999874
No 14
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.94 E-value=3.2e-09 Score=83.92 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=77.1
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc-CCCccEEEEecCCCCC--------c-------------
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK-HEFIQAVVLLHPSFVT--------V------------- 62 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~~hps~~~--------~------------- 62 (123)
.++.|+..++++|.++|+..+-+-++.|-|+||.+++.+|+ .+.|++++..+|.+.. .
T Consensus 154 ~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~ 233 (320)
T PF05448_consen 154 RVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAADVPFLCDFRRALELRADEGPYPEIRRYFR 233 (320)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEEESESSSSHHHHHHHT--STTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEecCCCccchhhhhhcCCccccHHHHHHHHh
Confidence 46789999999999999733322223566999999999876 6789999999886421 0
Q ss_pred ---------cc-------------cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 63 ---------DD-------------IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 63 ---------~d-------------~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
++ +.+|++|+++..|-.|+.+|++.+-.....+.. +-++.+||..+|.-
T Consensus 234 ~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~----~K~l~vyp~~~He~ 304 (320)
T PF05448_consen 234 WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPG----PKELVVYPEYGHEY 304 (320)
T ss_dssp HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--S----SEEEEEETT--SST
T ss_pred ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCC----CeeEEeccCcCCCc
Confidence 00 477999999999999999999988888888764 57999999999964
No 15
>PRK10162 acetyl esterase; Provisional
Probab=98.89 E-value=1.2e-08 Score=79.84 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=78.3
Q ss_pred hHHHHHHhchhhhcCC-------CceeecccccceeccHHHHHHhhcC--------CCccEEEEecCCCC----------
Q 040163 6 LIKDYIQALDPVWAQP-------EKIWISRFRVPNADRTEVAVELAKH--------EFIQAVVLLHPSFV---------- 60 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~-------~~~~~~~~~vGfC~GG~~a~~~a~~--------~~v~A~v~~hps~~---------- 60 (123)
.++|+.+++.++.... +++.+ +|.|+||.+++.++.. +.+++.+..+|..-
T Consensus 131 ~~~D~~~a~~~l~~~~~~~~~d~~~i~l----~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~~s~~~~ 206 (318)
T PRK10162 131 AIEEIVAVCCYFHQHAEDYGINMSRIGF----AGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVSRRLL 206 (318)
T ss_pred cHHHHHHHHHHHHHhHHHhCCChhHEEE----EEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCChhHHHh
Confidence 5789999999987543 34444 6889999999887631 35788888877421
Q ss_pred -------Cccc--------------c---------ccC---CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEE
Q 040163 61 -------TVDD--------------I---------EAV---EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKI 107 (123)
Q Consensus 61 -------~~~d--------------~---------~~I---~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~v 107 (123)
+.++ . ..+ --|+++++|+.|++.+ +...+.+.|++ .|+++++++
T Consensus 207 ~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~d--e~~~~~~~L~~-aGv~v~~~~ 283 (318)
T PRK10162 207 GGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLLD--DSRLLYQTLAA-HQQPCEFKL 283 (318)
T ss_pred CCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCcC--hHHHHHHHHHH-cCCCEEEEE
Confidence 0000 0 112 2599999999998864 67899999999 589999999
Q ss_pred eCCCCeeeccC
Q 040163 108 FLKFSHGWTVR 118 (123)
Q Consensus 108 YpG~~HGF~~r 118 (123)
|||+.|||...
T Consensus 284 ~~g~~H~f~~~ 294 (318)
T PRK10162 284 YPGTLHAFLHY 294 (318)
T ss_pred ECCCceehhhc
Confidence 99999999644
No 16
>PLN02442 S-formylglutathione hydrolase
Probab=98.88 E-value=1.6e-08 Score=78.00 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=64.1
Q ss_pred cceeccHHHHHHhhcC--CCccEEEEecCCCC-C----------------c------------cccccCCCcEEEEecCC
Q 040163 31 VPNADRTEVAVELAKH--EFIQAVVLLHPSFV-T----------------V------------DDIEAVEVPIAVLRAEF 79 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--~~v~A~v~~hps~~-~----------------~------------~d~~~I~~Pvl~~~g~~ 79 (123)
+|+||||..++.++.. +.++++++.-|..- . . ....+++.|+++++|++
T Consensus 148 ~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~ 227 (283)
T PLN02442 148 FGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEA 227 (283)
T ss_pred EEEChhHHHHHHHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCC
Confidence 7899999999998753 34666666544310 0 0 11234689999999999
Q ss_pred CCCCCHH-HHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 80 DQISPLA-LLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 80 D~~~p~e-~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
|+.+|.. +.+.+.+.+++ .+.+.++++|||..|+|.
T Consensus 228 D~~v~~~~~s~~~~~~l~~-~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 228 DKFLKEQLLPENFEEACKE-AGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred CccccccccHHHHHHHHHH-cCCCeEEEEeCCCCccHH
Confidence 9999974 46788888988 578899999999999984
No 17
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=98.82 E-value=2.2e-08 Score=78.72 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=41.5
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+|+++|++|.++|++..+.+.+.+.. .+.++++|||++|...
T Consensus 275 l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~---~~~~l~~i~~~gH~l~ 323 (349)
T PLN02385 275 LEEVSLPLLILHGEADKVTDPSVSKFLYEKASS---SDKKLKLYEDAYHSIL 323 (349)
T ss_pred cccCCCCEEEEEeCCCCccChHHHHHHHHHcCC---CCceEEEeCCCeeecc
Confidence 457899999999999999999988888877753 2568999999999864
No 18
>PHA02857 monoglyceride lipase; Provisional
Probab=98.80 E-value=5.5e-08 Score=73.29 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=74.7
Q ss_pred hhHHHHHHhchhhhcCC--CceeecccccceeccHHHHHHhhc-CC-CccEEEEecCCC---------------------
Q 040163 5 TLIKDYIQALDPVWAQP--EKIWISRFRVPNADRTEVAVELAK-HE-FIQAVVLLHPSF--------------------- 59 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~--~~~~~~~~~vGfC~GG~~a~~~a~-~~-~v~A~v~~hps~--------------------- 59 (123)
+.++|+.+.++.++..- .++. .+|+||||.+++.++. .+ .+++.+..-|..
T Consensus 78 ~~~~d~~~~l~~~~~~~~~~~~~----lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 78 VYVRDVVQHVVTIKSTYPGVPVF----LLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHhhCCCCCEE----EEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 45788889888875421 1333 3799999999999874 23 356555543310
Q ss_pred -----------CC-----------------------------------ccccccCCCcEEEEecCCCCCCCHHHHHHHHH
Q 040163 60 -----------VT-----------------------------------VDDIEAVEVPIAVLRAEFDQISPLALLKQFEE 93 (123)
Q Consensus 60 -----------~~-----------------------------------~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~ 93 (123)
++ .+.+.+|++|+++++|++|.++|++...++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~ 233 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQ 233 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHH
Confidence 00 01245789999999999999999998888877
Q ss_pred HHhhcCCCCeEEEEeCCCCeeec
Q 040163 94 VLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 94 ~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
.+.. ..++++|++++|-..
T Consensus 234 ~~~~----~~~~~~~~~~gH~~~ 252 (276)
T PHA02857 234 HANC----NREIKIYEGAKHHLH 252 (276)
T ss_pred HccC----CceEEEeCCCccccc
Confidence 7643 469999999999874
No 19
>PRK10749 lysophospholipase L2; Provisional
Probab=98.76 E-value=8.4e-08 Score=75.07 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=43.0
Q ss_pred ccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCC--CCeEEEEeCCCCeeec
Q 040163 66 EAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSE--VDGYVKIFLKFSHGWT 116 (123)
Q Consensus 66 ~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~--~~~~~~vYpG~~HGF~ 116 (123)
.++++|+|+++|++|+++|++..+.+.+.++.... ...++++|||++|-..
T Consensus 256 ~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~ 308 (330)
T PRK10749 256 GDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEIL 308 (330)
T ss_pred cCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhh
Confidence 56899999999999999999999999888875311 3468999999999764
No 20
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.75 E-value=2.3e-08 Score=78.38 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=82.4
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc-CCCccEEEE---------------------------ec
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK-HEFIQAVVL---------------------------LH 56 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~---------------------------~h 56 (123)
.+.+|++.=++..+.+.+.-+..+|..|.||||.++++++. .+.+-+++. ++
T Consensus 108 ~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~li 187 (313)
T KOG1455|consen 108 LVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLSKLI 187 (313)
T ss_pred HHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHHHhC
Confidence 36788888888888888877889999999999999999876 333322211 11
Q ss_pred CCCC---Cc-------------------------------------------cccccCCCcEEEEecCCCCCCCHHHHHH
Q 040163 57 PSFV---TV-------------------------------------------DDIEAVEVPIAVLRAEFDQISPLALLKQ 90 (123)
Q Consensus 57 ps~~---~~-------------------------------------------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~ 90 (123)
|.+- +. ..+.++++|++++||++|.+++++..++
T Consensus 188 P~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~Sk~ 267 (313)
T KOG1455|consen 188 PTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKVSKE 267 (313)
T ss_pred CceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHHHHH
Confidence 2110 00 1146799999999999999999998888
Q ss_pred HHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 91 FEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 91 ~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+.-.. .+-++|+|||+-|+-.
T Consensus 268 Lye~A~S---~DKTlKlYpGm~H~Ll 290 (313)
T KOG1455|consen 268 LYEKASS---SDKTLKLYPGMWHSLL 290 (313)
T ss_pred HHHhccC---CCCceeccccHHHHhh
Confidence 8887655 3779999999999864
No 21
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.74 E-value=4.6e-08 Score=71.16 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=39.3
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.++++|+++++|++|..+|++..+++.+.+. ..+++++++++|.+.
T Consensus 194 ~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~ 240 (257)
T TIGR03611 194 LDRIQHPVLLIANRDDMLVPYTQSLRLAAALP-----NAQLKLLPYGGHASN 240 (257)
T ss_pred hcccCccEEEEecCcCcccCHHHHHHHHHhcC-----CceEEEECCCCCCcc
Confidence 55789999999999999999998777776654 347888999999874
No 22
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.73 E-value=1.2e-07 Score=70.48 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=38.5
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+++++|++|..+|++..+.+.+.+. ..+++++|+++|-+.
T Consensus 216 ~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~-----~~~~~~~~~~gH~~~ 262 (278)
T TIGR03056 216 LPRITIPLHLIAGEEDKAVPPDESKRAATRVP-----TATLHVVPGGGHLVH 262 (278)
T ss_pred cccCCCCEEEEEeCCCcccCHHHHHHHHHhcc-----CCeEEEECCCCCccc
Confidence 34588999999999999999987777666553 358899999999874
No 23
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.73 E-value=8.8e-08 Score=77.90 Aligned_cols=92 Identities=18% Similarity=0.063 Sum_probs=66.8
Q ss_pred HHhchhhhcCC----CceeecccccceeccHHHHHHhhc-CC-CccEEEEecCCC------------------------C
Q 040163 11 IQALDPVWAQP----EKIWISRFRVPNADRTEVAVELAK-HE-FIQAVVLLHPSF------------------------V 60 (123)
Q Consensus 11 ~~~~~~l~~~~----~~~~~~~~~vGfC~GG~~a~~~a~-~~-~v~A~v~~hps~------------------------~ 60 (123)
.+.+++|..+| +++++ +|+||||.+++++|. .+ .+++++..-|.. +
T Consensus 250 ~avld~l~~~~~vd~~ri~l----~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~~~~~la~~l 325 (414)
T PRK05077 250 QAVLNALPNVPWVDHTRVAA----FGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEMYLDVLASRL 325 (414)
T ss_pred HHHHHHHHhCcccCcccEEE----EEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHHHHHHHHHHh
Confidence 56788888776 34555 789999999999875 34 688888743311 0
Q ss_pred C--cc------------------c-cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCC
Q 040163 61 T--VD------------------D-IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKF 111 (123)
Q Consensus 61 ~--~~------------------d-~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~ 111 (123)
. .. . ..++++|+|+++|++|+++|++..+.+.+... +.+++++|++
T Consensus 326 g~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~-----~~~l~~i~~~ 392 (414)
T PRK05077 326 GMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA-----DGKLLEIPFK 392 (414)
T ss_pred CCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC-----CCeEEEccCC
Confidence 0 00 0 14689999999999999999998887765543 4578889986
No 24
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=71.76 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=81.0
Q ss_pred hhHHHHHHhchhhhcCC-CceeecccccceeccHHHHHHhhcCCCccEEEEe-cCCCC----------------------
Q 040163 5 TLIKDYIQALDPVWAQP-EKIWISRFRVPNADRTEVAVELAKHEFIQAVVLL-HPSFV---------------------- 60 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~-~~~~~~~~~vGfC~GG~~a~~~a~~~~v~A~v~~-hps~~---------------------- 60 (123)
+-++|+..+.++|+++. +.|.+ +|+||||-+++.+|.+-.++.+|.. -|-..
T Consensus 67 DW~~~v~d~Y~~L~~~gy~eI~v----~GlSmGGv~alkla~~~p~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~ 142 (243)
T COG1647 67 DWWEDVEDGYRDLKEAGYDEIAV----VGLSMGGVFALKLAYHYPPKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEG 142 (243)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEE----EeecchhHHHHHHHhhCCccceeeecCCcccccchhhhHHHHHHHHHhhhccC
Confidence 45789999999999554 57777 6779999999999976446655552 22110
Q ss_pred -Cc-----------------------------cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCC
Q 040163 61 -TV-----------------------------DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLK 110 (123)
Q Consensus 61 -~~-----------------------------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG 110 (123)
+. ..+..|..|+++.+|++|+++|.+..+.+.+.+.. .+.++++|++
T Consensus 143 k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s---~~KeL~~~e~ 219 (243)
T COG1647 143 KDQEQIDKEMKSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES---DDKELKWLEG 219 (243)
T ss_pred CCHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC---CcceeEEEcc
Confidence 00 12567999999999999999999999999999875 3789999999
Q ss_pred CCeeec
Q 040163 111 FSHGWT 116 (123)
Q Consensus 111 ~~HGF~ 116 (123)
.+|=.+
T Consensus 220 SgHVIt 225 (243)
T COG1647 220 SGHVIT 225 (243)
T ss_pred CCceee
Confidence 999553
No 25
>COG0400 Predicted esterase [General function prediction only]
Probab=98.64 E-value=2.2e-07 Score=69.49 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=70.2
Q ss_pred ccceeccHHHHHHhhc--CCCccEEEEecCCCCCc-ccc-ccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEE
Q 040163 30 RVPNADRTEVAVELAK--HEFIQAVVLLHPSFVTV-DDI-EAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYV 105 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~--~~~v~A~v~~hps~~~~-~d~-~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~ 105 (123)
.+|||-|+.+++.+.- ...++.++.+||-.... ... ..-..|+++.+|+.|+++|.....++.+.|++ .+.+++.
T Consensus 103 ~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~-~g~~v~~ 181 (207)
T COG0400 103 LIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPELLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTA-SGADVEV 181 (207)
T ss_pred EEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCccccccCCCeEEEeccCcCCccCHHHHHHHHHHHHH-cCCCEEE
Confidence 3799999999988754 34689999999875532 222 33469999999999999999999999999999 6899999
Q ss_pred EEeCCCCeeec
Q 040163 106 KIFLKFSHGWT 116 (123)
Q Consensus 106 ~vYpG~~HGF~ 116 (123)
+.|+ .+|...
T Consensus 182 ~~~~-~GH~i~ 191 (207)
T COG0400 182 RWHE-GGHEIP 191 (207)
T ss_pred EEec-CCCcCC
Confidence 9999 789753
No 26
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.64 E-value=7.6e-08 Score=69.16 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=38.7
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.++++|+++++|++|..+|.+....+.+.+. ..+++++|+++|.+.
T Consensus 189 ~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~ 235 (251)
T TIGR02427 189 LGAIAVPTLCIAGDQDGSTPPELVREIADLVP-----GARFAEIRGAGHIPC 235 (251)
T ss_pred hhhcCCCeEEEEeccCCcCChHHHHHHHHhCC-----CceEEEECCCCCccc
Confidence 45689999999999999999997777666653 358899999999764
No 27
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.61 E-value=9e-08 Score=73.51 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=81.7
Q ss_pred hhhHHHHHHhchhhhcCC---CceeecccccceeccHHHHHHhhcCCCccEEEEecC--C-----------------CCC
Q 040163 4 LTLIKDYIQALDPVWAQP---EKIWISRFRVPNADRTEVAVELAKHEFIQAVVLLHP--S-----------------FVT 61 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~~---~~~~~~~~~vGfC~GG~~a~~~a~~~~v~A~v~~hp--s-----------------~~~ 61 (123)
+++.+|+.++..+|++.- ++|.+ +|+++|..-++++|++.+++|.+---| | +..
T Consensus 109 ~n~y~Di~avye~Lr~~~g~~~~Iil----~G~SiGt~~tv~Lasr~~~~alVL~SPf~S~~rv~~~~~~~~~~~d~f~~ 184 (258)
T KOG1552|consen 109 RNLYADIKAVYEWLRNRYGSPERIIL----YGQSIGTVPTVDLASRYPLAAVVLHSPFTSGMRVAFPDTKTTYCFDAFPN 184 (258)
T ss_pred ccchhhHHHHHHHHHhhcCCCceEEE----EEecCCchhhhhHhhcCCcceEEEeccchhhhhhhccCcceEEeeccccc
Confidence 467899999999999865 45544 789999999999988655666554222 0 111
Q ss_pred ccccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccC
Q 040163 62 VDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVR 118 (123)
Q Consensus 62 ~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r 118 (123)
.+.+..|++|+|+++|.+|.++|..--.++.+..++ +++-.+-.|++|-.-.+
T Consensus 185 i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~----~~epl~v~g~gH~~~~~ 237 (258)
T KOG1552|consen 185 IEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKE----KVEPLWVKGAGHNDIEL 237 (258)
T ss_pred cCcceeccCCEEEEecccCceecccccHHHHHhccc----cCCCcEEecCCCccccc
Confidence 367888999999999999999999988888888775 35666667888876443
No 28
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.61 E-value=2.1e-07 Score=68.74 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=37.8
Q ss_pred ccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 66 EAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 66 ~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
.++++|+|+++|++|+.++.+..+.+.+.+. ..++++++|++|-+.
T Consensus 192 ~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~ 237 (255)
T PRK10673 192 PAWPHPALFIRGGNSPYVTEAYRDDLLAQFP-----QARAHVIAGAGHWVH 237 (255)
T ss_pred CCCCCCeEEEECCCCCCCCHHHHHHHHHhCC-----CcEEEEeCCCCCeee
Confidence 3567999999999999999988777777664 357889999999653
No 29
>PRK10115 protease 2; Provisional
Probab=98.58 E-value=2.7e-07 Score=79.44 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=82.2
Q ss_pred hhHHHHHHhchhhhcCC----CceeecccccceeccHHHHHHhhc-C-CCccEEEEecCC-----CC-------C-----
Q 040163 5 TLIKDYIQALDPVWAQP----EKIWISRFRVPNADRTEVAVELAK-H-EFIQAVVLLHPS-----FV-------T----- 61 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~----~~~~~~~~~vGfC~GG~~a~~~a~-~-~~v~A~v~~hps-----~~-------~----- 61 (123)
+-.+|+++++++|.+++ +|+++. |-|.||-++..++. . +.++|+++..|- ++ +
T Consensus 503 ~~~~D~~a~~~~Lv~~g~~d~~rl~i~----G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~ 578 (686)
T PRK10115 503 NTFNDYLDACDALLKLGYGSPSLCYGM----GGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFE 578 (686)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHeEEE----EECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHH
Confidence 45789999999998765 477774 45999999876653 3 578999986652 00 0
Q ss_pred ----c---------------cccccCCCc-EEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEe---CCCCeee
Q 040163 62 ----V---------------DDIEAVEVP-IAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIF---LKFSHGW 115 (123)
Q Consensus 62 ----~---------------~d~~~I~~P-vl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vY---pG~~HGF 115 (123)
+ ..+++++.| +|+.+|.+|+.||+.+..++.++|++ .+++.+..+| ++++||.
T Consensus 579 e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~-~~~~~~~vl~~~~~~~GHg~ 654 (686)
T PRK10115 579 EWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRE-LKTDDHLLLLCTDMDSGHGG 654 (686)
T ss_pred HhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHh-cCCCCceEEEEecCCCCCCC
Confidence 0 125667899 67779999999999999999999998 4777777777 9999995
No 30
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.57 E-value=5.7e-07 Score=72.86 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=40.8
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+|+++|++|.++|++..+++.+.+.. ...++++|||+.|.-.
T Consensus 320 L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~---~~k~l~~~~ga~H~l~ 368 (395)
T PLN02652 320 FKSVTVPFMVLHGTADRVTDPLASQDLYNEAAS---RHKDIKLYDGFLHDLL 368 (395)
T ss_pred cccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCC---CCceEEEECCCeEEec
Confidence 356899999999999999999988888777653 2468899999999853
No 31
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.56 E-value=4.1e-07 Score=68.28 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=39.5
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+++|++|+++++|++|+.+|++..+++.+.++ +.+++++|+++|..
T Consensus 219 l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~-----~~~~~~i~~agH~~ 264 (282)
T TIGR03343 219 LGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP-----DAQLHVFSRCGHWA 264 (282)
T ss_pred HhhCCCCEEEEEccCCCcCCchhHHHHHHhCC-----CCEEEEeCCCCcCC
Confidence 45789999999999999999988777777664 46889999999986
No 32
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.50 E-value=2.8e-07 Score=66.98 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=78.7
Q ss_pred hhhHHHHHHhchhhhcC-------CCceeecccccceeccHHHHHHhhc----C--CCccEEEEecCCC-C--C--c---
Q 040163 4 LTLIKDYIQALDPVWAQ-------PEKIWISRFRVPNADRTEVAVELAK----H--EFIQAVVLLHPSF-V--T--V--- 62 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~-------~~~~~~~~~~vGfC~GG~~a~~~a~----~--~~v~A~v~~hps~-~--~--~--- 62 (123)
-+.++|+.+++.++.+. ++++.+ +|.|-||.+++.++. . +.+++.+..+|.. + . .
T Consensus 46 p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l----~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~ 121 (211)
T PF07859_consen 46 PAALEDVKAAYRWLLKNADKLGIDPERIVL----IGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYD 121 (211)
T ss_dssp THHHHHHHHHHHHHHHTHHHHTEEEEEEEE----EEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHH
T ss_pred cccccccccceeeeccccccccccccceEE----eecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccc
Confidence 36789999999999987 345444 678999999988763 1 3578888888742 1 0 0
Q ss_pred -----cc--------------------------cc-----cC--CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeE
Q 040163 63 -----DD--------------------------IE-----AV--EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGY 104 (123)
Q Consensus 63 -----~d--------------------------~~-----~I--~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~ 104 (123)
.+ +. .+ -.|+++++|+.|.++ ++...+.+.|++ .+++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~-~gv~v~ 198 (211)
T PF07859_consen 122 DSNENKDDPFLPAPKIDWFWKLYLPGSDRDDPLASPLNASDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKK-AGVDVE 198 (211)
T ss_dssp HHHHHSTTSSSBHHHHHHHHHHHHSTGGTTSTTTSGGGSSCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHH-TT-EEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCeeeeccccccch--HHHHHHHHHHHH-CCCCEE
Confidence 00 00 11 138999999999765 567899999998 689999
Q ss_pred EEEeCCCCeeec
Q 040163 105 VKIFLKFSHGWT 116 (123)
Q Consensus 105 ~~vYpG~~HGF~ 116 (123)
+++|+|..|+|.
T Consensus 199 ~~~~~g~~H~f~ 210 (211)
T PF07859_consen 199 LHVYPGMPHGFF 210 (211)
T ss_dssp EEEETTEETTGG
T ss_pred EEEECCCeEEee
Confidence 999999999995
No 33
>PRK11071 esterase YqiA; Provisional
Probab=98.50 E-value=1.1e-06 Score=64.18 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=53.8
Q ss_pred cceeccHHHHHHhhcCCCccEEEEecCCCC-----------------------Cc--------ccccc--CCCcEEEEec
Q 040163 31 VPNADRTEVAVELAKHEFIQAVVLLHPSFV-----------------------TV--------DDIEA--VEVPIAVLRA 77 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~~~v~A~v~~hps~~-----------------------~~--------~d~~~--I~~Pvl~~~g 77 (123)
||+||||.+++.++.....+++. ..|+.. +. -++.. ..+|+++++|
T Consensus 66 vG~S~Gg~~a~~~a~~~~~~~vl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~~~v~iihg 144 (190)
T PRK11071 66 VGSSLGGYYATWLSQCFMLPAVV-VNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQIDPLESPDLIWLLQQ 144 (190)
T ss_pred EEECHHHHHHHHHHHHcCCCEEE-ECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCCccCCChhhEEEEEe
Confidence 89999999999998643344433 222211 00 11222 5567889999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 78 EFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 78 ~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
.+|..+|.+...++.+.. ...+++|++|+|..
T Consensus 145 ~~De~V~~~~a~~~~~~~--------~~~~~~ggdH~f~~ 176 (190)
T PRK11071 145 TGDEVLDYRQAVAYYAAC--------RQTVEEGGNHAFVG 176 (190)
T ss_pred CCCCcCCHHHHHHHHHhc--------ceEEECCCCcchhh
Confidence 999999999888877732 45578999999954
No 34
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.49 E-value=3.8e-07 Score=64.30 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=71.5
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC--CCccEEEEecCCCC----------------------
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLHPSFV---------------------- 60 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~hps~~---------------------- 60 (123)
+..+|+.+.++.+.. .++-+ ||+|+||.+++.++.. ..|++.+..-|...
T Consensus 51 ~~~~~l~~~l~~~~~--~~~~l----vG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (228)
T PF12697_consen 51 DYAEDLAELLDALGI--KKVIL----VGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRS 124 (228)
T ss_dssp HHHHHHHHHHHHTTT--SSEEE----EEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccccc--ccccc----cccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccc
Confidence 345666666666644 23433 8999999999998763 35777666443321
Q ss_pred ---------------------------------------C----ccccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 040163 61 ---------------------------------------T----VDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 61 ---------------------------------------~----~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~ 97 (123)
. .+.+.++++|+++++|++|..+|.+..+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~- 203 (228)
T PF12697_consen 125 RSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP- 203 (228)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC-
Confidence 0 02346789999999999999999777777766653
Q ss_pred cCCCCeEEEEeCCCCeee
Q 040163 98 KSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 98 ~~~~~~~~~vYpG~~HGF 115 (123)
..+++++||++|..
T Consensus 204 ----~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 204 ----NAELVVIPGAGHFL 217 (228)
T ss_dssp ----TEEEEEETTSSSTH
T ss_pred ----CCEEEEECCCCCcc
Confidence 46999999999976
No 35
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.44 E-value=9.9e-08 Score=77.04 Aligned_cols=99 Identities=19% Similarity=0.093 Sum_probs=59.4
Q ss_pred HHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc-CCCccEEEEe-------------------------------
Q 040163 8 KDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK-HEFIQAVVLL------------------------------- 55 (123)
Q Consensus 8 ~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~~------------------------------- 55 (123)
-|...++|+|.++|+...-+-.++|||+||..++.+|+ .+.|+|+|+.
T Consensus 208 ~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDdRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~ 287 (390)
T PF12715_consen 208 WDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDDRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNY 287 (390)
T ss_dssp HHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG-
T ss_pred HHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcchhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhh
Confidence 46677999999999733333334888999999999977 6788887641
Q ss_pred cCCCCC---ccccccCC--CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCC
Q 040163 56 HPSFVT---VDDIEAVE--VPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLK 110 (123)
Q Consensus 56 hps~~~---~~d~~~I~--~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG 110 (123)
+|.+.. -.|+..+- .|+|+..|..|..+|. ++...+++.. ....+++.||+
T Consensus 288 iPgl~r~~D~PdIasliAPRPll~~nG~~Dklf~i--V~~AY~~~~~--p~n~~~~~~p~ 343 (390)
T PF12715_consen 288 IPGLWRYFDFPDIASLIAPRPLLFENGGKDKLFPI--VRRAYAIMGA--PDNFQIHHYPK 343 (390)
T ss_dssp -TTCCCC--HHHHHHTTTTS-EEESS-B-HHHHHH--HHHHHHHTT---GGGEEE---GG
T ss_pred CccHHhhCccHHHHHHhCCCcchhhcCCcccccHH--HHHHHHhcCC--CcceEEeeccc
Confidence 222221 13444443 6799999999988755 5666666553 35689999996
No 36
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.43 E-value=7.8e-07 Score=66.07 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=68.0
Q ss_pred HHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC-CCccEEEEecCCCC--CccccccCCCcEEEEecCCCCCC
Q 040163 7 IKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH-EFIQAVVLLHPSFV--TVDDIEAVEVPIAVLRAEFDQIS 83 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~-~~v~A~v~~hps~~--~~~d~~~I~~Pvl~~~g~~D~~~ 83 (123)
++|..+++||++++-.....-- ..|||||+.++..++.+ +......+.-|-.- +...+.-..+|.++++|+.|.++
T Consensus 85 ~~Da~aaldW~~~~hp~s~~~~-l~GfSFGa~Ia~~la~r~~e~~~~is~~p~~~~~dfs~l~P~P~~~lvi~g~~Ddvv 163 (210)
T COG2945 85 LEDAAAALDWLQARHPDSASCW-LAGFSFGAYIAMQLAMRRPEILVFISILPPINAYDFSFLAPCPSPGLVIQGDADDVV 163 (210)
T ss_pred HHHHHHHHHHHHhhCCCchhhh-hcccchHHHHHHHHHHhcccccceeeccCCCCchhhhhccCCCCCceeEecChhhhh
Confidence 6899999999998754433211 14789999999998864 33333333222111 11234445789999999999777
Q ss_pred CHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 84 PLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 84 p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+++.+-+..+ +.+.++++-+|+.|=|.
T Consensus 164 ~l~~~l~~~~------~~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 164 DLVAVLKWQE------SIKITVITIPGADHFFH 190 (210)
T ss_pred cHHHHHHhhc------CCCCceEEecCCCceec
Confidence 6665444333 35778899999999774
No 37
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.39 E-value=6e-07 Score=69.88 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=78.0
Q ss_pred hHHHHHHhchhhhcCCC----ceeecccccceeccHHHHHHhhc-CCCccEEEEecCCCCC------c------c-----
Q 040163 6 LIKDYIQALDPVWAQPE----KIWISRFRVPNADRTEVAVELAK-HEFIQAVVLLHPSFVT------V------D----- 63 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~----~~~~~~~~vGfC~GG~~a~~~a~-~~~v~A~v~~hps~~~------~------~----- 63 (123)
+..|+..+++.+.+.++ +|++.|. |.||.+++..++ ++.+|++++.+|-+.. . +
T Consensus 156 v~~D~~~ave~~~sl~~vde~Ri~v~G~----SqGGglalaaaal~~rik~~~~~~Pfl~df~r~i~~~~~~~ydei~~y 231 (321)
T COG3458 156 VFLDAVRAVEILASLDEVDEERIGVTGG----SQGGGLALAAAALDPRIKAVVADYPFLSDFPRAIELATEGPYDEIQTY 231 (321)
T ss_pred ehHHHHHHHHHHhccCccchhheEEecc----ccCchhhhhhhhcChhhhcccccccccccchhheeecccCcHHHHHHH
Confidence 34688899999988774 7777555 999999988766 6789999998885321 0 0
Q ss_pred ----------------------ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCe
Q 040163 64 ----------------------DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 64 ----------------------d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~H 113 (123)
-+.+||+|+|+..|-.|+++||..+-.+...+.. +-++++||--.|
T Consensus 232 ~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~----~K~i~iy~~~aH 299 (321)
T COG3458 232 FKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT----SKTIEIYPYFAH 299 (321)
T ss_pred HHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccC----CceEEEeecccc
Confidence 1467999999999999999999998888888875 346667775556
No 38
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.36 E-value=1.9e-06 Score=65.17 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=37.3
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+.+|++|+|+++|++|+++|++..+++.+.+. ..+++++++ +|-.
T Consensus 203 l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~-----~~~~~~i~~-gH~~ 247 (276)
T TIGR02240 203 LHKIQQPTLVLAGDDDPIIPLINMRLLAWRIP-----NAELHIIDD-GHLF 247 (276)
T ss_pred hhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCC-----CCEEEEEcC-CCch
Confidence 57899999999999999999998888877664 347778886 8965
No 39
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.3e-06 Score=74.53 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=84.4
Q ss_pred HHHHHHhchhhhcCCCceeecccc-cceeccHHHHHHhhc-C--CCccEEEEecCCC----------------CCc----
Q 040163 7 IKDYIQALDPVWAQPEKIWISRFR-VPNADRTEVAVELAK-H--EFIQAVVLLHPSF----------------VTV---- 62 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~~~~~~~~~-vGfC~GG~~a~~~a~-~--~~v~A~v~~hps~----------------~~~---- 62 (123)
++|...++-.+..++ .+-..+.+ -|.++||-+++.+.. . .-++|+++..|-. .+.
T Consensus 589 v~D~~~~~~~~~~~~-~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~ 667 (755)
T KOG2100|consen 589 VKDQIEAVKKVLKLP-FIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKG 667 (755)
T ss_pred hHHHHHHHHHHHhcc-cccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccch
Confidence 578888888888777 44433333 478999999888654 3 3478888866631 011
Q ss_pred -------cccccCCCcE-EEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCC
Q 040163 63 -------DDIEAVEVPI-AVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRY 119 (123)
Q Consensus 63 -------~d~~~I~~Pv-l~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~ 119 (123)
.-+.+++.|- |++||+.|.-++.++..++.++|+. .|++++..+||+..|||..+.
T Consensus 668 y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~-~gv~~~~~vypde~H~is~~~ 731 (755)
T KOG2100|consen 668 YEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQN-AGVPFRLLVYPDENHGISYVE 731 (755)
T ss_pred hhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHH-CCCceEEEEeCCCCccccccc
Confidence 1145577775 9999999999999999999999999 589999999999999997664
No 40
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.36 E-value=4.6e-06 Score=61.28 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=35.4
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+++++|++|.+ +++..+.+.+.+. ..+++++++++|.+.
T Consensus 227 l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~ 272 (288)
T TIGR01250 227 LSEIKVPTLLTVGEFDTM-TPEAAREMQELIA-----GSRLVVFPDGSHMTM 272 (288)
T ss_pred hhccCCCEEEEecCCCcc-CHHHHHHHHHhcc-----CCeEEEeCCCCCCcc
Confidence 356899999999999985 6676666655543 357899999999764
No 41
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.35 E-value=2.1e-06 Score=66.99 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=34.0
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+.++++|+++++|++|..+|++..+. +. ...+++++||++|-+
T Consensus 310 l~~i~~Pvlii~g~~D~~vp~~~~~~----l~----~~~~~~~~~~~gH~~ 352 (371)
T PRK14875 310 LASLAIPVLVIWGEQDRIIPAAHAQG----LP----DGVAVHVLPGAGHMP 352 (371)
T ss_pred HhcCCCCEEEEEECCCCccCHHHHhh----cc----CCCeEEEeCCCCCCh
Confidence 45689999999999999999876432 22 146889999999965
No 42
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.33 E-value=4.7e-06 Score=65.74 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=41.9
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
+.+|++|+++++|++|+++|++..+.+.+.+.. .+.++++|++..|++..
T Consensus 282 l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~~ 331 (350)
T TIGR01836 282 LKNIKMPILNIYAERDHLVPPDASKALNDLVSS---EDYTELSFPGGHIGIYV 331 (350)
T ss_pred HHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC---CCeEEEEcCCCCEEEEE
Confidence 446899999999999999999998888888754 36789999988888754
No 43
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.30 E-value=3e-06 Score=62.38 Aligned_cols=90 Identities=8% Similarity=-0.001 Sum_probs=60.2
Q ss_pred HHHHHHhchhhhcCC----CceeecccccceeccHHHHHHhhc-CC-CccEEEEecCCCCCc------------------
Q 040163 7 IKDYIQALDPVWAQP----EKIWISRFRVPNADRTEVAVELAK-HE-FIQAVVLLHPSFVTV------------------ 62 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~----~~~~~~~~~vGfC~GG~~a~~~a~-~~-~v~A~v~~hps~~~~------------------ 62 (123)
..|+...++.++.+. +++. .+|||+||.+++.++. .+ .+.+++...+.....
T Consensus 76 ~~~~~~~i~~~~~~~~id~~~i~----l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (212)
T TIGR01840 76 VESLHQLIDAVKANYSIDPNRVY----VTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQMCTAATAA 151 (212)
T ss_pred HHHHHHHHHHHHHhcCcChhheE----EEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhcCCCCCHH
Confidence 456677777776643 2333 3788999999999875 33 466665544332100
Q ss_pred ----------cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 040163 63 ----------DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSE 100 (123)
Q Consensus 63 ----------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~ 100 (123)
.+......|+++.+|.+|+++|++..+++.+.|++..+
T Consensus 152 ~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~~~ 199 (212)
T TIGR01840 152 SVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKVYG 199 (212)
T ss_pred HHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHhcC
Confidence 01112334467999999999999999999999998534
No 44
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.27 E-value=3.9e-06 Score=63.90 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=36.9
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+++|++|+++++|++|+.+|.+..+.+.+.+ ...+++++++++|...
T Consensus 230 l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~-----~~~~~~~i~~~gH~~~ 276 (294)
T PLN02824 230 LPAVKCPVLIAWGEKDPWEPVELGRAYANFD-----AVEDFIVLPGVGHCPQ 276 (294)
T ss_pred HhhcCCCeEEEEecCCCCCChHHHHHHHhcC-----CccceEEeCCCCCChh
Confidence 4568999999999999999998766554432 2358999999999653
No 45
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.25 E-value=1.6e-06 Score=73.45 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=71.3
Q ss_pred ccceeccHHHHHHhhcCC---CccEEEEe-cCC-------CCCccccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhc
Q 040163 30 RVPNADRTEVAVELAKHE---FIQAVVLL-HPS-------FVTVDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDK 98 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~~---~v~A~v~~-hps-------~~~~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~ 98 (123)
.||+.+|..++...+..+ .|+|.|+. ||- .+-+|++..++.|+||..|.+|++++++.++++.+.++.
T Consensus 254 LvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgirDE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA- 332 (784)
T KOG3253|consen 254 LVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGIRDEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA- 332 (784)
T ss_pred EEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCCcchhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc-
Confidence 489999987777766533 48888883 432 233588999999999999999999999999999999986
Q ss_pred CCCCeEEEEeCCCCeeeccCC
Q 040163 99 SEVDGYVKIFLKFSHGWTVRY 119 (123)
Q Consensus 99 ~~~~~~~~vYpG~~HGF~~r~ 119 (123)
++++++..|++|.|+..+
T Consensus 333 ---~~elhVI~~adhsmaipk 350 (784)
T KOG3253|consen 333 ---EVELHVIGGADHSMAIPK 350 (784)
T ss_pred ---cceEEEecCCCccccCCc
Confidence 789999999999998765
No 46
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.25 E-value=5.8e-06 Score=61.79 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=60.3
Q ss_pred ceeccHHHHHHhhcC-C-CccEEEEecCCCC-CccccccC-----CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCe
Q 040163 32 PNADRTEVAVELAKH-E-FIQAVVLLHPSFV-TVDDIEAV-----EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDG 103 (123)
Q Consensus 32 GfC~GG~~a~~~a~~-~-~v~A~v~~hps~~-~~~d~~~I-----~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~ 103 (123)
||++||.+++.++-. + .+..++...+-.. +...+... ..|++..||+.|+++|..-.++..+.|+. .+...
T Consensus 99 Gfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~~~~~~~~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~-~~~~~ 177 (206)
T KOG2112|consen 99 GFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLPGWLPGVNYTPILLCHGTADPLVPFRFGEKSAQFLKS-LGVRV 177 (206)
T ss_pred ccCchHHHHHHHHhccccccceeeccccccccchhhccCCccccCcchhheecccCCceeehHHHHHHHHHHHH-cCCce
Confidence 569999999988753 2 3333443332222 11111111 67999999999999999999999999998 57779
Q ss_pred EEEEeCCCCeee
Q 040163 104 YVKIFLKFSHGW 115 (123)
Q Consensus 104 ~~~vYpG~~HGF 115 (123)
+++.|+|..|--
T Consensus 178 ~f~~y~g~~h~~ 189 (206)
T KOG2112|consen 178 TFKPYPGLGHST 189 (206)
T ss_pred eeeecCCccccc
Confidence 999999999964
No 47
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.25 E-value=9.8e-06 Score=62.80 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=76.5
Q ss_pred hHHHHHHhchhhhcC-------CCceeecccccceeccHHHHHHhhc--C----CCccEEEEecCCC-CC----------
Q 040163 6 LIKDYIQALDPVWAQ-------PEKIWISRFRVPNADRTEVAVELAK--H----EFIQAVVLLHPSF-VT---------- 61 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~-------~~~~~~~~~~vGfC~GG~~a~~~a~--~----~~v~A~v~~hps~-~~---------- 61 (123)
.+.|+.+++.++.++ |++|.+ .|.|-||.+++.++. + +..++.+..+|.. .+
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v----~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~~~~ 204 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAV----AGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGYG 204 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEE----EecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchhhcC
Confidence 578999999999976 566666 567999999988753 1 2345555555431 00
Q ss_pred ---------------------c-------------cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEE
Q 040163 62 ---------------------V-------------DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKI 107 (123)
Q Consensus 62 ---------------------~-------------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~v 107 (123)
. +++.. --|+++..|+.|.+.+ +...+.+.|++ .+++.+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~-agv~~~~~~ 280 (312)
T COG0657 205 EADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRA-AGVPVELRV 280 (312)
T ss_pred CccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHH-cCCeEEEEE
Confidence 0 01222 4789999999999887 77899999999 689999999
Q ss_pred eCCCCeeec
Q 040163 108 FLKFSHGWT 116 (123)
Q Consensus 108 YpG~~HGF~ 116 (123)
|||+.|+|.
T Consensus 281 ~~g~~H~f~ 289 (312)
T COG0657 281 YPGMIHGFD 289 (312)
T ss_pred eCCcceecc
Confidence 999999994
No 48
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.25 E-value=4.8e-06 Score=59.45 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=33.3
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
+.++++|+++++|++|+.++ +. .+.+.+. ....+++++|+++|.+..
T Consensus 190 ~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~-~~~~~~~~~~~~gH~~~~ 236 (251)
T TIGR03695 190 LQALTIPVLYLCGEKDEKFV-QI----AKEMQKL-LPNLTLVIIANAGHNIHL 236 (251)
T ss_pred hhCCCCceEEEeeCcchHHH-HH----HHHHHhc-CCCCcEEEEcCCCCCcCc
Confidence 45689999999999997653 22 2333432 235689999999997643
No 49
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.07 E-value=2.1e-05 Score=60.29 Aligned_cols=49 Identities=10% Similarity=0.008 Sum_probs=37.5
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+++++|++|+.+|.+. +.+.+.+... ....+.++++++|...
T Consensus 235 l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~--~~~~~~~i~~~gH~~~ 283 (302)
T PRK00870 235 LERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA--AGQPHPTIKGAGHFLQ 283 (302)
T ss_pred hhcCCCceEEEecCCCCcccCch-HHHHhhcccc--cccceeeecCCCccch
Confidence 35788999999999999999866 6666666531 1234778999999864
No 50
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.04 E-value=3.3e-05 Score=59.08 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=67.9
Q ss_pred hhHHHHHHhchhhhcCC---CceeecccccceeccHHHHHHhhcC-CCccEEEEecCCCCCc------------------
Q 040163 5 TLIKDYIQALDPVWAQP---EKIWISRFRVPNADRTEVAVELAKH-EFIQAVVLLHPSFVTV------------------ 62 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~---~~~~~~~~~vGfC~GG~~a~~~a~~-~~v~A~v~~hps~~~~------------------ 62 (123)
+..+|+.++++.++.+. +++.+ +|+||||.+++.++.. +.|++.+...|-....
T Consensus 80 ~~~~d~~~~~~~l~~~~~g~~~i~l----~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 155 (274)
T TIGR03100 80 GIDADIAAAIDAFREAAPHLRRIVA----WGLCDAASAALLYAPADLRVAGLVLLNPWVRTEAAQAASRIRHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEE----EEECHHHHHHHHHhhhCCCccEEEEECCccCCcccchHHHHHHHHHHHHhC
Confidence 35689999999997652 23333 7999999999988643 5677777654431100
Q ss_pred ---------------------------------------------cccccCCCcEEEEecCCCCCCCHHHH------HHH
Q 040163 63 ---------------------------------------------DDIEAVEVPIAVLRAEFDQISPLALL------KQF 91 (123)
Q Consensus 63 ---------------------------------------------~d~~~I~~Pvl~~~g~~D~~~p~e~~------~~~ 91 (123)
+.+.++++|+++++|+.|+..+ +.. .+.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~ 234 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQ-EFADSVLGEPAW 234 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHH-HHHHHhccChhh
Confidence 1123678999999999997642 221 222
Q ss_pred HHHHhhcCCCCeEEEEeCCCCeee
Q 040163 92 EEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 92 ~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.+.+.. ...++++||++.|-.
T Consensus 235 ~~~l~~---~~v~~~~~~~~~H~l 255 (274)
T TIGR03100 235 RGALED---PGIERVEIDGADHTF 255 (274)
T ss_pred HHHhhc---CCeEEEecCCCCccc
Confidence 232321 357899999999943
No 51
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.02 E-value=2.4e-05 Score=63.89 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=53.1
Q ss_pred HHHhchhhhcCCC----ceeecccccceeccHHHHHHhhc--CCCccEEEEecCC---CCCc------------------
Q 040163 10 YIQALDPVWAQPE----KIWISRFRVPNADRTEVAVELAK--HEFIQAVVLLHPS---FVTV------------------ 62 (123)
Q Consensus 10 ~~~~~~~l~~~~~----~~~~~~~~vGfC~GG~~a~~~a~--~~~v~A~v~~hps---~~~~------------------ 62 (123)
..+.+|+|..+|. ||++ +|+||||-+|.++|. .++++|+|+.=|. +++.
T Consensus 245 ~~aVLd~L~~~p~VD~~RV~~----~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P~my~d~LA~r 320 (411)
T PF06500_consen 245 HQAVLDYLASRPWVDHTRVGA----WGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVPDMYLDVLASR 320 (411)
T ss_dssp HHHHHHHHHHSTTEEEEEEEE----EEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCccChhheEE----EEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCCHHHHHHHHHH
Confidence 4577899999985 4444 788999999999985 4789998884331 1100
Q ss_pred -----------------------ccc--ccCCCcEEEEecCCCCCCCHHHHHHHH
Q 040163 63 -----------------------DDI--EAVEVPIAVLRAEFDQISPLALLKQFE 92 (123)
Q Consensus 63 -----------------------~d~--~~I~~Pvl~~~g~~D~~~p~e~~~~~~ 92 (123)
.-+ ++.++|+|.+++++|+++|.|+...+.
T Consensus 321 lG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia 375 (411)
T PF06500_consen 321 LGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIA 375 (411)
T ss_dssp CT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHH
T ss_pred hCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHH
Confidence 012 556899999999999999999765443
No 52
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=97.99 E-value=6.5e-05 Score=65.68 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=42.9
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
++.+|++|+|+++|..|..+++++..++.+.|+++ +++.++.+.++ .|++.
T Consensus 450 ~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~-g~pkkL~l~~g-~H~~~ 500 (767)
T PRK05371 450 DADKIKASVLVVHGLNDWNVKPKQVYQWWDALPEN-GVPKKLFLHQG-GHVYP 500 (767)
T ss_pred HhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhc-CCCeEEEEeCC-CccCC
Confidence 34679999999999999999999998999999883 67888888876 58653
No 53
>PLN02511 hydrolase
Probab=97.94 E-value=3.7e-05 Score=61.89 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=34.1
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
+.+|++|+|+++|++|+++|.+.... +..+. ....++.++++++|-
T Consensus 294 L~~I~vPtLiI~g~dDpi~p~~~~~~--~~~~~--~p~~~l~~~~~gGH~ 339 (388)
T PLN02511 294 IKHVRVPLLCIQAANDPIAPARGIPR--EDIKA--NPNCLLIVTPSGGHL 339 (388)
T ss_pred hccCCCCeEEEEcCCCCcCCcccCcH--hHHhc--CCCEEEEECCCccee
Confidence 45699999999999999999875421 11222 235789999999994
No 54
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=97.92 E-value=6.7e-06 Score=62.63 Aligned_cols=103 Identities=21% Similarity=0.325 Sum_probs=74.4
Q ss_pred HHHHHHhchhhhcCCC--ceeecccccceeccHHHHHHhhcCC--CccEEE--------------EecC---C-------
Q 040163 7 IKDYIQALDPVWAQPE--KIWISRFRVPNADRTEVAVELAKHE--FIQAVV--------------LLHP---S------- 58 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~--~~~~~~~~vGfC~GG~~a~~~a~~~--~v~A~v--------------~~hp---s------- 58 (123)
--|..++++||-.+|. |.-+ +..|=+.||..|+.+|+.. .+.|+. .+|| .
T Consensus 130 ~lDs~avldyl~t~~~~dktki--vlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~~~k~i~~lc~ 207 (300)
T KOG4391|consen 130 KLDSEAVLDYLMTRPDLDKTKI--VLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPFPMKYIPLLCY 207 (300)
T ss_pred eccHHHHHHHHhcCccCCcceE--EEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccchhhHHHHHHH
Confidence 3578899999999985 3211 2247799999999988642 333322 2333 1
Q ss_pred ---CCCccccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 59 ---FVTVDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 59 ---~~~~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
+.+...+..-+.|+|++.|..|+++||-.+.++.+.-..+ .-.+..||+..|-
T Consensus 208 kn~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~---~Krl~eFP~gtHN 263 (300)
T KOG4391|consen 208 KNKWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR---TKRLAEFPDGTHN 263 (300)
T ss_pred HhhhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh---hhhheeCCCCccC
Confidence 1122456667899999999999999999998888887653 4578889999995
No 55
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.91 E-value=8.7e-05 Score=55.05 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=50.1
Q ss_pred cceeccHHHHHHhhc----------CCCccEEEEecCCCCC---c-c--ccccCCCcEEEEecCCCCCCCHHHHHHHHHH
Q 040163 31 VPNADRTEVAVELAK----------HEFIQAVVLLHPSFVT---V-D--DIEAVEVPIAVLRAEFDQISPLALLKQFEEV 94 (123)
Q Consensus 31 vGfC~GG~~a~~~a~----------~~~v~A~v~~hps~~~---~-~--d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~ 94 (123)
+|||.||.+|..++. .+.++.++.+=+.... . + +-.+|++|.|-++|++|++++++..+++.+.
T Consensus 107 lGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~ 186 (212)
T PF03959_consen 107 LGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPDYQELYDEPKISIPTLHVIGENDPVVPPERSEALAEM 186 (212)
T ss_dssp EEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHH
T ss_pred EeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchhhhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHh
Confidence 789999999877653 1357777665322211 1 1 2466899999999999999999999999999
Q ss_pred HhhcCCCCeEEEEeCCCCeee
Q 040163 95 LTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 95 l~~~~~~~~~~~vYpG~~HGF 115 (123)
.... .++..++| +|-+
T Consensus 187 ~~~~----~~v~~h~g-GH~v 202 (212)
T PF03959_consen 187 FDPD----ARVIEHDG-GHHV 202 (212)
T ss_dssp HHHH----EEEEEESS-SSS-
T ss_pred ccCC----cEEEEECC-CCcC
Confidence 8862 67888875 6654
No 56
>PRK10985 putative hydrolase; Provisional
Probab=97.89 E-value=7.9e-05 Score=58.23 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=36.8
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
+.+|++|+++++|++|+++|++....+.+.. ...++.+.++++|--..
T Consensus 251 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~GH~~~~ 298 (324)
T PRK10985 251 LNQIRKPTLIIHAKDDPFMTHEVIPKPESLP-----PNVEYQLTEHGGHVGFV 298 (324)
T ss_pred HhCCCCCEEEEecCCCCCCChhhChHHHHhC-----CCeEEEECCCCCceeeC
Confidence 4678999999999999999988766654322 24688889999995443
No 57
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=97.84 E-value=2.7e-05 Score=55.73 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=39.8
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+++++|++|+++|.+..+.+.+.+. ..+++++|+++|.+.
T Consensus 184 l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~ 230 (245)
T TIGR01738 184 LQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP-----HSELYIFAKAAHAPF 230 (245)
T ss_pred HhcCCCCEEEEeecCCcccCHHHHHHHHHhCC-----CCeEEEeCCCCCCcc
Confidence 46899999999999999999988777766553 468999999999864
No 58
>PLN02578 hydrolase
Probab=97.79 E-value=0.00013 Score=57.69 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=36.9
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+++++|++|+++|.+..+++.+.+. ..+++++ +++|-..
T Consensus 292 l~~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p-----~a~l~~i-~~GH~~~ 337 (354)
T PLN02578 292 LSKLSCPLLLLWGDLDPWVGPAKAEKIKAFYP-----DTTLVNL-QAGHCPH 337 (354)
T ss_pred hhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCC-----CCEEEEe-CCCCCcc
Confidence 45689999999999999999998888777764 3467777 4799763
No 59
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.76 E-value=0.00027 Score=54.18 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=39.2
Q ss_pred ccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 66 EAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 66 ~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
..+.+|+.++.|++|..+..+++..+++..++ .+++++|+| +|-|-
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~----~f~l~~fdG-gHFfl 218 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDELGAWREHTKG----DFTLRVFDG-GHFFL 218 (244)
T ss_pred CCcCcceEEeccCcchhccHHHHHHHHHhhcC----CceEEEecC-cceeh
Confidence 35899999999999999999888888777654 789999997 89873
No 60
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=97.71 E-value=0.00031 Score=56.91 Aligned_cols=46 Identities=11% Similarity=-0.011 Sum_probs=33.8
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+.+|++|+++++|++|.+.| +...++.+.+ +.+.+++++|+++|..
T Consensus 321 l~~I~vP~liI~G~~D~i~~-~~~~~~~~~~----~~~~~~~~i~~aGH~~ 366 (402)
T PLN02894 321 ASEWKVPTTFIYGRHDWMNY-EGAVEARKRM----KVPCEIIRVPQGGHFV 366 (402)
T ss_pred cccCCCCEEEEEeCCCCCCc-HHHHHHHHHc----CCCCcEEEeCCCCCee
Confidence 56689999999999998765 4444443333 2357899999999965
No 61
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.70 E-value=0.00021 Score=58.43 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=59.9
Q ss_pred cceeccHHHHHHhhc--CCCccEEEEecCCCCCc-----------ccccc-----CCCcEEEEecCCCCCCCHHHHHHHH
Q 040163 31 VPNADRTEVAVELAK--HEFIQAVVLLHPSFVTV-----------DDIEA-----VEVPIAVLRAEFDQISPLALLKQFE 92 (123)
Q Consensus 31 vGfC~GG~~a~~~a~--~~~v~A~v~~hps~~~~-----------~d~~~-----I~~Pvl~~~g~~D~~~p~e~~~~~~ 92 (123)
.|+||||..|+.++- ...|.++++.=|++--. +.+.+ -+..+.+-.|..|..+ .+..+++.
T Consensus 293 aG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~~~~~~~~l~~~l~~~~~~~~~lr~~i~~G~~E~~~-~~~~~~l~ 371 (411)
T PRK10439 293 AGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHRGGQQEGVLLEQLKAGEVSARGLRIVLEAGRREPMI-MRANQALY 371 (411)
T ss_pred EEEChHHHHHHHHHHhCcccccEEEEeccceecCCccCCchhHHHHHHHhcccCCCCceEEEeCCCCCchH-HHHHHHHH
Confidence 678999999999864 34678877776664100 11111 1235777889888554 45678999
Q ss_pred HHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 93 EVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 93 ~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
+.|++ .+.++++++|+| +|-+.+
T Consensus 372 ~~L~~-~G~~~~~~~~~G-GHd~~~ 394 (411)
T PRK10439 372 AQLHP-AGHSVFWRQVDG-GHDALC 394 (411)
T ss_pred HHHHH-CCCcEEEEECCC-CcCHHH
Confidence 99999 588999999998 698743
No 62
>PRK10349 carboxylesterase BioH; Provisional
Probab=97.63 E-value=7.5e-05 Score=55.57 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=39.7
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
.+.+|++|+++++|++|+++|.+..+.+.+.+. ..+++++|+++|...
T Consensus 191 ~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~-----~~~~~~i~~~gH~~~ 238 (256)
T PRK10349 191 PLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP-----HSESYIFAKAAHAPF 238 (256)
T ss_pred HHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC-----CCeEEEeCCCCCCcc
Confidence 356789999999999999999987766666654 458999999999764
No 63
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00032 Score=60.29 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=79.9
Q ss_pred HHHHHHhchhhhcCCCceeeccccc-ceeccHHHHHHh-hcCC-CccEEEEecCC--------CCC--------c-----
Q 040163 7 IKDYIQALDPVWAQPEKIWISRFRV-PNADRTEVAVEL-AKHE-FIQAVVLLHPS--------FVT--------V----- 62 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~~~~~~~~~v-GfC~GG~~a~~~-a~~~-~v~A~v~~hps--------~~~--------~----- 62 (123)
++|=...+.+|.++..=|-+.+.+| |+++||-+++.+ +..| -++++++.=|- ..| .
T Consensus 707 ~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY 786 (867)
T KOG2281|consen 707 VEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGY 786 (867)
T ss_pred ehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcc
Confidence 4566677777877764333444444 899999999886 4444 46877774442 111 0
Q ss_pred ---------cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCC
Q 040163 63 ---------DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRY 119 (123)
Q Consensus 63 ---------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~ 119 (123)
+-+..-...+|++||--|.-+-..-...+..+|.+ .|+++++++||...|+-.+..
T Consensus 787 ~agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvk-agKpyeL~IfP~ERHsiR~~e 851 (867)
T KOG2281|consen 787 GAGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVK-AGKPYELQIFPNERHSIRNPE 851 (867)
T ss_pred cchhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHh-CCCceEEEEccccccccCCCc
Confidence 12333356699999999999988888888889888 689999999999999975543
No 64
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.55 E-value=0.00078 Score=49.35 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=72.2
Q ss_pred hhhHHHHHHhchhhhcCCC--ceeecccccceeccHHHHHHhhcC--CCccEEEE----ecCCCC----CccccccCCCc
Q 040163 4 LTLIKDYIQALDPVWAQPE--KIWISRFRVPNADRTEVAVELAKH--EFIQAVVL----LHPSFV----TVDDIEAVEVP 71 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~~~--~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~----~hps~~----~~~d~~~I~~P 71 (123)
-++...++.++..|.+.-. ..-+ | |-||||+.+-..+.. ..|++.++ +||..- -.+.+..|+.|
T Consensus 69 ~t~~~~~~~~~aql~~~l~~gpLi~-G---GkSmGGR~aSmvade~~A~i~~L~clgYPfhppGKPe~~Rt~HL~gl~tP 144 (213)
T COG3571 69 GTLNPEYIVAIAQLRAGLAEGPLII-G---GKSMGGRVASMVADELQAPIDGLVCLGYPFHPPGKPEQLRTEHLTGLKTP 144 (213)
T ss_pred ccCCHHHHHHHHHHHhcccCCceee-c---cccccchHHHHHHHhhcCCcceEEEecCccCCCCCcccchhhhccCCCCC
Confidence 3566777788888866542 2212 2 469999999887653 35777776 555421 12678889999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccC
Q 040163 72 IAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVR 118 (123)
Q Consensus 72 vl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r 118 (123)
.++.+|+.|++=+.+++ ....- ..+.++++..++.|-.-.|
T Consensus 145 tli~qGtrD~fGtr~~V---a~y~l---s~~iev~wl~~adHDLkp~ 185 (213)
T COG3571 145 TLITQGTRDEFGTRDEV---AGYAL---SDPIEVVWLEDADHDLKPR 185 (213)
T ss_pred eEEeecccccccCHHHH---Hhhhc---CCceEEEEeccCccccccc
Confidence 99999999977776665 22222 2478999999999966444
No 65
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=97.43 E-value=0.00033 Score=56.06 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=43.2
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeC-CCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFL-KFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYp-G~~HGF~ 116 (123)
+.+|++|+|+++|++|.++|++..+.+.+.+.. .+...++.+++ +++|...
T Consensus 305 l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~-a~~~~~l~~i~~~~GH~~~ 356 (379)
T PRK00175 305 LARIKARFLVVSFTSDWLFPPARSREIVDALLA-AGADVSYAEIDSPYGHDAF 356 (379)
T ss_pred HhcCCCCEEEEEECCccccCHHHHHHHHHHHHh-cCCCeEEEEeCCCCCchhH
Confidence 468999999999999999999999999999986 35556777775 9999753
No 66
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.42 E-value=0.00085 Score=63.01 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=37.9
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhc-------CCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDK-------SEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~-------~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+|+++|++|..+| +...++.+.+.+. .....+++++|+++|...
T Consensus 1564 L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~ 1621 (1655)
T PLN02980 1564 LKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH 1621 (1655)
T ss_pred HhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchH
Confidence 56789999999999999875 5556677666541 001258999999999763
No 67
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=97.40 E-value=0.00029 Score=55.97 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=37.4
Q ss_pred cccCCCcEEEEecCCCCCCCHHH-HHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLAL-LKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~-~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+.+|++|+|+++|++|+++|++. ..+..+.+.++ -...+++++||++|..
T Consensus 288 l~~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~-ip~~~l~~i~~aGH~~ 338 (360)
T PLN02679 288 IPRISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQ-LPNVTLYVLEGVGHCP 338 (360)
T ss_pred hhhcCCCEEEEEeCCCCCcCchhhHHHHHHhhhcc-CCceEEEEcCCCCCCc
Confidence 55789999999999999999874 23333444432 2357899999999965
No 68
>PLN02965 Probable pheophorbidase
Probab=97.39 E-value=0.0003 Score=52.62 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=38.2
Q ss_pred cCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 67 AVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 67 ~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
++++|+++++|++|..+|++..+.+.+.+. ..+++++++++|.+.
T Consensus 191 ~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~-----~a~~~~i~~~GH~~~ 235 (255)
T PLN02965 191 AEKVPRVYIKTAKDNLFDPVRQDVMVENWP-----PAQTYVLEDSDHSAF 235 (255)
T ss_pred cCCCCEEEEEcCCCCCCCHHHHHHHHHhCC-----cceEEEecCCCCchh
Confidence 599999999999999999987777776654 347899999999874
No 69
>PRK03592 haloalkane dehalogenase; Provisional
Probab=97.34 E-value=0.00029 Score=53.66 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=36.5
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+++++|++|+++|++...++...+.. ..+++++++++|...
T Consensus 224 l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~ 271 (295)
T PRK03592 224 LATSDVPKLLINAEPGAILTTGAIRDWCRSWPN----QLEITVFGAGLHFAQ 271 (295)
T ss_pred hccCCCCeEEEeccCCcccCcHHHHHHHHHhhh----hcceeeccCcchhhh
Confidence 356899999999999999966655555444332 358899999999874
No 70
>PRK05855 short chain dehydrogenase; Validated
Probab=97.27 E-value=0.00056 Score=56.27 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=33.0
Q ss_pred cCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 67 AVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 67 ~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.+++|+++++|++|+++|++....+.+.+. ..+++++++ +|-.
T Consensus 231 ~~~~P~lii~G~~D~~v~~~~~~~~~~~~~-----~~~~~~~~~-gH~~ 273 (582)
T PRK05855 231 YTDVPVQLIVPTGDPYVRPALYDDLSRWVP-----RLWRREIKA-GHWL 273 (582)
T ss_pred CccCceEEEEeCCCcccCHHHhccccccCC-----cceEEEccC-CCcc
Confidence 389999999999999999987776654442 346777774 7855
No 71
>PLN00021 chlorophyllase
Probab=97.27 E-value=0.0024 Score=50.41 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=51.7
Q ss_pred ccceeccHHHHHHhhcC-------CCccEEEEecCCCC------Cc-------cccccCCCcEEEEecCCCC-----CCC
Q 040163 30 RVPNADRTEVAVELAKH-------EFIQAVVLLHPSFV------TV-------DDIEAVEVPIAVLRAEFDQ-----ISP 84 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~-------~~v~A~v~~hps~~------~~-------~d~~~I~~Pvl~~~g~~D~-----~~p 84 (123)
.+|+|+||.+++.++.. ..+++.+...|-.- +. ....++..|++++.+..|. .+|
T Consensus 130 l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~~~p~il~~~~~s~~~~~P~liig~g~~~~~~~~~~p 209 (313)
T PLN00021 130 LAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQTPPPVLTYAPHSFNLDIPVLVIGTGLGGEPRNPLFP 209 (313)
T ss_pred EEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccCCCCcccccCcccccCCCCeEEEecCCCccccccccc
Confidence 37999999999998753 24777777666211 10 1345588999999999763 333
Q ss_pred ----HH-HHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 85 ----LA-LLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 85 ----~e-~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
.. ...++.++.+. +....+-++.+|-
T Consensus 210 ~~ap~~~~~~~f~~~~~~----~~~~~~~~~~gH~ 240 (313)
T PLN00021 210 PCAPDGVNHAEFFNECKA----PAVHFVAKDYGHM 240 (313)
T ss_pred ccCCCCCCHHHHHHhcCC----CeeeeeecCCCcc
Confidence 32 33556666543 5556566666664
No 72
>PRK07581 hypothetical protein; Validated
Probab=97.24 E-value=0.00051 Score=53.59 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=38.1
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCC-CCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLK-FSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG-~~HGF 115 (123)
+.+|++|+|+++|++|..+|++..+.+.+.+. ..+++++|+ ++|-.
T Consensus 271 L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip-----~a~l~~i~~~~GH~~ 317 (339)
T PRK07581 271 LGSITAKTFVMPISTDLYFPPEDCEAEAALIP-----NAELRPIESIWGHLA 317 (339)
T ss_pred HhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCC-----CCeEEEeCCCCCccc
Confidence 45689999999999999999998777766664 358889999 89954
No 73
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=97.23 E-value=0.00052 Score=57.26 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=39.2
Q ss_pred cCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 67 AVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 67 ~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+|++|+|+++|++|+.+|++..+.+.+.+. ..+++++|+++|...
T Consensus 416 ~I~vPtLII~Ge~D~ivP~~~~~~la~~iP-----~a~l~vI~~aGH~~~ 460 (481)
T PLN03087 416 QLKCDVAIFHGGDDELIPVECSYAVKAKVP-----RARVKVIDDKDHITI 460 (481)
T ss_pred hCCCCEEEEEECCCCCCCHHHHHHHHHhCC-----CCEEEEeCCCCCcch
Confidence 589999999999999999998888777764 358999999999854
No 74
>PRK06489 hypothetical protein; Provisional
Probab=97.19 E-value=0.00055 Score=54.16 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=37.6
Q ss_pred cccCCCcEEEEecCCCCCCCHHHH--HHHHHHHhhcCCCCeEEEEeCCC----Ceeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALL--KQFEEVLTDKSEVDGYVKIFLKF----SHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~--~~~~~~l~~~~~~~~~~~vYpG~----~HGF~ 116 (123)
+.+|++|+|+++|++|..+|++.. +.+.+.+. ..+++++|++ +|.+.
T Consensus 288 L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip-----~a~l~~i~~a~~~~GH~~~ 340 (360)
T PRK06489 288 LEKIKAPVLAINSADDERNPPETGVMEAALKRVK-----HGRLVLIPASPETRGHGTT 340 (360)
T ss_pred HHhCCCCEEEEecCCCcccChhhHHHHHHHHhCc-----CCeEEEECCCCCCCCcccc
Confidence 467999999999999999998864 55655553 3589999996 99874
No 75
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=97.14 E-value=0.00094 Score=52.59 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=40.3
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEE-EEeCCCCeee
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYV-KIFLKFSHGW 115 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~-~vYpG~~HGF 115 (123)
.+++|++|+|+++|++|.++|++..+++.+.+.. ....+++ .++++++|..
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~-~~~~v~~~~i~~~~GH~~ 334 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFPPAESRELAKALPA-AGLRVTYVEIESPYGHDA 334 (351)
T ss_pred HHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhh-cCCceEEEEeCCCCCcch
Confidence 3567899999999999999999999999999976 2222222 3578999965
No 76
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=97.14 E-value=0.00096 Score=54.59 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=28.0
Q ss_pred HHHHHHhchhhhcC-CCceeecccccceeccHHHHHHhh
Q 040163 7 IKDYIQALDPVWAQ-PEKIWISRFRVPNADRTEVAVELA 44 (123)
Q Consensus 7 ~~d~~~~~~~l~~~-~~~~~~~~~~vGfC~GG~~a~~~a 44 (123)
.+|+..+++|++.+ |.. ..++|||+|||.+.+...
T Consensus 181 t~Dl~~~v~~i~~~~P~a---~l~avG~S~Gg~iL~nYL 216 (409)
T KOG1838|consen 181 TEDLREVVNHIKKRYPQA---PLFAVGFSMGGNILTNYL 216 (409)
T ss_pred HHHHHHHHHHHHHhCCCC---ceEEEEecchHHHHHHHh
Confidence 58999999999864 332 456799999999998864
No 77
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=97.12 E-value=0.00084 Score=51.78 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=39.4
Q ss_pred cccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 65 IEAV-EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 65 ~~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
+.++ ++|+++++|++|+++|.+..+++.+.+. ..+++++++++|.-..
T Consensus 243 ~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~ 291 (306)
T TIGR01249 243 ISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFP-----EAELKVTNNAGHSAFD 291 (306)
T ss_pred hhhccCCCeEEEecCCCCCCCHHHHHHHHHhCC-----CCEEEEECCCCCCCCC
Confidence 3456 5899999999999999998887777664 3589999999998643
No 78
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=97.12 E-value=0.0012 Score=53.50 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=43.0
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCC-CCeee
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLK-FSHGW 115 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG-~~HGF 115 (123)
.+.+|++|+++++|++|.++|++..+.+.+.+.. .+...+++++++ .+|--
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~-~~~~a~l~~I~s~~GH~~ 369 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQK-QGKYAEVYEIESINGHMA 369 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhh-cCCCeEEEEECCCCCcch
Confidence 3557999999999999999999999999998875 345688999985 88864
No 79
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=97.11 E-value=0.00084 Score=47.97 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=39.4
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
..+|++|+++++|++|+.+|++....+.+.+. ..+.+++++.+|..
T Consensus 171 l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~-----~~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 171 LSNIKVPTLIIWGEDDPLVPPESSEQLAKLIP-----NSQLVLIEGSGHFA 216 (230)
T ss_dssp HTTTTSEEEEEEETTCSSSHHHHHHHHHHHST-----TEEEEEETTCCSTH
T ss_pred ccccCCCeEEEEeCCCCCCCHHHHHHHHHhcC-----CCEEEECCCCChHH
Confidence 35799999999999999999998888776664 36899999999975
No 80
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.09 E-value=0.0039 Score=50.51 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=48.7
Q ss_pred cceeccHHHHHHhhc-CCCccEEEEecCCCCC--ccccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEE
Q 040163 31 VPNADRTEVAVELAK-HEFIQAVVLLHPSFVT--VDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKI 107 (123)
Q Consensus 31 vGfC~GG~~a~~~a~-~~~v~A~v~~hps~~~--~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~v 107 (123)
.|+||||.-++.++. ...+++++..=|-+.. .+...+++.|+|++++++ +--.+....+++.... .....+.+
T Consensus 233 ~GHSFGGATa~~~l~~d~r~~~~I~LD~W~~Pl~~~~~~~i~~P~L~InSe~--f~~~~~~~~~~~~~~~--~~~~~~~t 308 (379)
T PF03403_consen 233 AGHSFGGATALQALRQDTRFKAGILLDPWMFPLGDEIYSKIPQPLLFINSES--FQWWENIFRMKKVISN--NKESRMLT 308 (379)
T ss_dssp EEETHHHHHHHHHHHH-TT--EEEEES---TTS-GGGGGG--S-EEEEEETT--T--HHHHHHHHTT--T--TS-EEEEE
T ss_pred eecCchHHHHHHHHhhccCcceEEEeCCcccCCCcccccCCCCCEEEEECcc--cCChhhHHHHHHHhcc--CCCcEEEE
Confidence 699999999998765 5689999998776543 355688999999998876 3344555666664443 34667888
Q ss_pred eCCCCeee
Q 040163 108 FLKFSHGW 115 (123)
Q Consensus 108 YpG~~HGF 115 (123)
..|+.|.=
T Consensus 309 i~gt~H~s 316 (379)
T PF03403_consen 309 IKGTAHLS 316 (379)
T ss_dssp ETT--GGG
T ss_pred ECCCcCCC
Confidence 99999963
No 81
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=97.05 E-value=0.00065 Score=51.78 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=40.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 68 I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
.+||||-.||.+|.++|.|+..++.+.++. +++++.||+.|+|.
T Consensus 198 ~~C~VLTvhGs~D~IVPve~AkefAk~i~n-----H~L~iIEgADHnyt 241 (269)
T KOG4667|consen 198 KQCRVLTVHGSEDEIVPVEDAKEFAKIIPN-----HKLEIIEGADHNYT 241 (269)
T ss_pred ccCceEEEeccCCceeechhHHHHHHhccC-----CceEEecCCCcCcc
Confidence 379999999999999999999999999863 68999999999995
No 82
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0045 Score=46.99 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=53.3
Q ss_pred cceeccHHHHHHhhcC----------CCccEEEE--ecCCC---CC-ccccccCCCcEEEEecCCCCCCCHHHHHHHHHH
Q 040163 31 VPNADRTEVAVELAKH----------EFIQAVVL--LHPSF---VT-VDDIEAVEVPIAVLRAEFDQISPLALLKQFEEV 94 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~----------~~v~A~v~--~hps~---~~-~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~ 94 (123)
||||-|+.++-.++.. |.++-++. .+-.. .. ...-..|++|-|-++|+.|.++|.+...++.+.
T Consensus 109 lGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~ 188 (230)
T KOG2551|consen 109 LGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKLDESAYKRPLSTPSLHIFGETDTIVPSERSEQLAES 188 (230)
T ss_pred cccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchhhhhhhccCCCCCeeEEecccceeecchHHHHHHHh
Confidence 7889999998777641 44554443 33221 11 133457999999999999999999999999998
Q ss_pred HhhcCCCCeEEEEeCCCCe
Q 040163 95 LTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 95 l~~~~~~~~~~~vYpG~~H 113 (123)
.++. .+..-|| +|
T Consensus 189 ~~~a-----~vl~Hpg-gH 201 (230)
T KOG2551|consen 189 FKDA-----TVLEHPG-GH 201 (230)
T ss_pred cCCC-----eEEecCC-Cc
Confidence 8752 4544554 44
No 83
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.00 E-value=0.0035 Score=45.35 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=54.8
Q ss_pred ccceeccHHHHHHhh-c--CCCccEEEEecCCCCC-------------ccccccCCCcEEEEecCCCCCCCHHHHHHHHH
Q 040163 30 RVPNADRTEVAVELA-K--HEFIQAVVLLHPSFVT-------------VDDIEAVEVPIAVLRAEFDQISPLALLKQFEE 93 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a-~--~~~v~A~v~~hps~~~-------------~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~ 93 (123)
.||.|+|...+++.+ . ...|++++-.-|-... .-....+..|-+++.++||+++|.+..+++.+
T Consensus 59 lVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~~~~~~~f~~~p~~~l~~~~~viaS~nDp~vp~~~a~~~A~ 138 (171)
T PF06821_consen 59 LVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEPFPPELDGFTPLPRDPLPFPSIVIASDNDPYVPFERAQRLAQ 138 (171)
T ss_dssp EEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHCCTCGGCCCTTSHCCHHHCCEEEEEETTBSSS-HHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccchhhhccccccCcccccCCCeEEEEcCCCCccCHHHHHHHHH
Confidence 389999999999987 3 3467766664332110 01123356777999999999999999999998
Q ss_pred HHhhcCCCCeEEEEeCCCCe
Q 040163 94 VLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 94 ~l~~~~~~~~~~~vYpG~~H 113 (123)
.+.. ++.+.++++|
T Consensus 139 ~l~a------~~~~~~~~GH 152 (171)
T PF06821_consen 139 RLGA------ELIILGGGGH 152 (171)
T ss_dssp HHT-------EEEEETS-TT
T ss_pred HcCC------CeEECCCCCC
Confidence 8854 7889999999
No 84
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=97.00 E-value=0.0026 Score=50.88 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=75.2
Q ss_pred chhhhHHHHHHhchhhhcCC----------Cceeeccc-ccceeccHHHHHHhh-cCCCccEEEEecCCCCC--cccccc
Q 040163 2 RALTLIKDYIQALDPVWAQP----------EKIWISRF-RVPNADRTEVAVELA-KHEFIQAVVLLHPSFVT--VDDIEA 67 (123)
Q Consensus 2 ~~~~~~~d~~~~~~~l~~~~----------~~~~~~~~-~vGfC~GG~~a~~~a-~~~~v~A~v~~hps~~~--~~d~~~ 67 (123)
+||++|+++..---.-...| +++-.... ++|.||||.-++..+ ....+++++.+-.=+.. .+...+
T Consensus 206 ~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~lD~WM~Pl~~~~~~~ 285 (399)
T KOG3847|consen 206 KALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIALDAWMFPLDQLQYSQ 285 (399)
T ss_pred HHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeeeeeeecccchhhhhh
Confidence 57777777654332222222 23333333 369999998877654 45689999887543332 356788
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 68 I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
++-|+++++.++= =-.|....+++...++ ..-.+.+|.|+.|--
T Consensus 286 arqP~~finv~~f--Q~~en~~vmKki~~~n--~g~~~it~~GsVHqn 329 (399)
T KOG3847|consen 286 ARQPTLFINVEDF--QWNENLLVMKKIESQN--EGNHVITLDGSVHQN 329 (399)
T ss_pred ccCCeEEEEcccc--cchhHHHHHHhhhCCC--ccceEEEEccceecc
Confidence 9999999996554 3578888999988864 456888999999963
No 85
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=96.96 E-value=0.0015 Score=51.44 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=39.4
Q ss_pred ccC--CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 66 EAV--EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 66 ~~I--~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
.++ ++|+|+++|++|++++++....+.+.+.. .+.++++|||+.|-...
T Consensus 265 ~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~---~~~~l~~~~g~~H~i~~ 315 (332)
T TIGR01607 265 DYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI---SNKELHTLEDMDHVITI 315 (332)
T ss_pred hhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC---CCcEEEEECCCCCCCcc
Confidence 445 68999999999999999987777666543 25688999999998753
No 86
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=96.89 E-value=0.0014 Score=51.23 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=38.0
Q ss_pred cccCCCcEEEEecCCCCCCC-HHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISP-LALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p-~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
..++++|+|+++|++|++++ .+...++.+.+.. ...++++|||+.|--
T Consensus 224 ~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~---~~~~~~~~~g~~He~ 272 (298)
T COG2267 224 APAIALPVLLLQGGDDRVVDNVEGLARFFERAGS---PDKELKVIPGAYHEL 272 (298)
T ss_pred cccccCCEEEEecCCCccccCcHHHHHHHHhcCC---CCceEEecCCcchhh
Confidence 45689999999999999999 6666666665544 247999999999964
No 87
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.85 E-value=0.0059 Score=49.10 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=66.8
Q ss_pred hhhHHHHHHhchhhhcCCC-ceeecccccceeccHHHHHHhhcC-CCccEEEEec-C---C--CC----C---------c
Q 040163 4 LTLIKDYIQALDPVWAQPE-KIWISRFRVPNADRTEVAVELAKH-EFIQAVVLLH-P---S--FV----T---------V 62 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~~~-~~~~~~~~vGfC~GG~~a~~~a~~-~~v~A~v~~h-p---s--~~----~---------~ 62 (123)
...+.++.+.++|+.+++. ++++ .|+||||..|...|+. +.--+.+.+- + + +. + .
T Consensus 156 ~~~i~E~~~Ll~Wl~~~G~~~~g~----~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L~~ 231 (348)
T PF09752_consen 156 RATILESRALLHWLEREGYGPLGL----TGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDALEK 231 (348)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEE----EEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHHHH
Confidence 3578899999999998863 5555 4669999999888764 2211222211 0 0 00 0 0
Q ss_pred c----------------------------------------------ccccCCCc-----EEEEecCCCCCCCHHHHHHH
Q 040163 63 D----------------------------------------------DIEAVEVP-----IAVLRAEFDQISPLALLKQF 91 (123)
Q Consensus 63 ~----------------------------------------------d~~~I~~P-----vl~~~g~~D~~~p~e~~~~~ 91 (123)
+ ++.+..+| +.+..+++|.++|.+++..+
T Consensus 232 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~~L 311 (348)
T PF09752_consen 232 QFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVLSL 311 (348)
T ss_pred HhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcchH
Confidence 1 02333333 78999999999999999988
Q ss_pred HHHHhhcCCCCeEEEEeCCCCe
Q 040163 92 EEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 92 ~~~l~~~~~~~~~~~vYpG~~H 113 (123)
++... +.|+.+.+| +|
T Consensus 312 q~~WP-----GsEvR~l~g-GH 327 (348)
T PF09752_consen 312 QEIWP-----GSEVRYLPG-GH 327 (348)
T ss_pred HHhCC-----CCeEEEecC-Cc
Confidence 88886 347777887 77
No 88
>COG4099 Predicted peptidase [General function prediction only]
Probab=96.80 E-value=0.0021 Score=51.09 Aligned_cols=95 Identities=20% Similarity=0.166 Sum_probs=62.5
Q ss_pred hchhhhcCCCceeecc-cccceeccHHHHHHhhc-C-CCccEEEEecCCCCCccccccC-CCcEEEEecCCCCCCCHHHH
Q 040163 13 ALDPVWAQPEKIWISR-FRVPNADRTEVAVELAK-H-EFIQAVVLLHPSFVTVDDIEAV-EVPIAVLRAEFDQISPLALL 88 (123)
Q Consensus 13 ~~~~l~~~~~~~~~~~-~~vGfC~GG~~a~~~a~-~-~~v~A~v~~hps~~~~~d~~~I-~~Pvl~~~g~~D~~~p~e~~ 88 (123)
.++-|.++++ |--.| +++|+|+||.-++.++. . +.+.|++..-+..-....++.+ +.|+-++|+++|.++|.+..
T Consensus 256 i~~vlas~yn-ID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~lv~~lk~~piWvfhs~dDkv~Pv~nS 334 (387)
T COG4099 256 ILEVLASTYN-IDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVYLVRTLKKAPIWVFHSSDDKVIPVSNS 334 (387)
T ss_pred HHHHHhhccC-cccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhhhhhhhccCceEEEEecCCCccccCcc
Confidence 3346667774 32222 24677999988888875 3 4567777654443212334444 58999999999999999998
Q ss_pred HHHHHHHhhcCCCCeEEEEeC
Q 040163 89 KQFEEVLTDKSEVDGYVKIFL 109 (123)
Q Consensus 89 ~~~~~~l~~~~~~~~~~~vYp 109 (123)
.-..++|++ -..+....-|.
T Consensus 335 rv~y~~lk~-~~~kv~Ytaf~ 354 (387)
T COG4099 335 RVLYERLKA-LDRKVNYTAFL 354 (387)
T ss_pred eeehHHHHh-hccccchhhhh
Confidence 888888887 34444444443
No 89
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=96.78 E-value=0.0017 Score=50.94 Aligned_cols=49 Identities=33% Similarity=0.473 Sum_probs=39.5
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCC-CCeeec
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLK-FSHGWT 116 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG-~~HGF~ 116 (123)
++.+|++|+|+++|++|..+|++....+.+.+.. ..+++++++ ++|...
T Consensus 272 ~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p----~a~l~~i~~~aGH~~~ 321 (343)
T PRK08775 272 DPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP----RGSLRVLRSPYGHDAF 321 (343)
T ss_pred ChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC----CCeEEEEeCCccHHHH
Confidence 3568999999999999999999987777776642 368899985 999753
No 90
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=96.72 E-value=0.0047 Score=48.16 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=42.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCC-CCeEEEEeCCCCeee
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSE-VDGYVKIFLKFSHGW 115 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~-~~~~~~vYpG~~HGF 115 (123)
++|+++.+|..|.++|....+++.+.+-++ | .+.+++.|++.+|.-
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~-G~a~V~~~~~~~~~H~~ 265 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAA-GGADVEYVRYPGGGHLG 265 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHc-CCCCEEEEecCCCChhh
Confidence 799999999999999999999999999984 6 799999999999974
No 91
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=96.69 E-value=0.014 Score=45.31 Aligned_cols=104 Identities=12% Similarity=0.120 Sum_probs=64.2
Q ss_pred hhHHHHHHhchhhhcCCC-ceeecccccceeccHHHHHHhhcCCCccEEEEecCC------------------CC-----
Q 040163 5 TLIKDYIQALDPVWAQPE-KIWISRFRVPNADRTEVAVELAKHEFIQAVVLLHPS------------------FV----- 60 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~-~~~~~~~~vGfC~GG~~a~~~a~~~~v~A~v~~hps------------------~~----- 60 (123)
...+|....++||+..+. ++|. |--|.-|++|+..+++..+.-.+..-+- .+
T Consensus 83 ~g~~sL~~V~dwl~~~g~~~~GL----IAaSLSaRIAy~Va~~i~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~lp~ 158 (294)
T PF02273_consen 83 IGKASLLTVIDWLATRGIRRIGL----IAASLSARIAYEVAADINLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQLPE 158 (294)
T ss_dssp HHHHHHHHHHHHHHHTT---EEE----EEETTHHHHHHHHTTTS--SEEEEES--S-HHHHHHHHHSS-GGGS-GGG--S
T ss_pred HhHHHHHHHHHHHHhcCCCcchh----hhhhhhHHHHHHHhhccCcceEEEEeeeeeHHHHHHHHhccchhhcchhhCCC
Confidence 456889999999998763 6665 3348999999998875433222221110 00
Q ss_pred ----------------------------CccccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCC
Q 040163 61 ----------------------------TVDDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFS 112 (123)
Q Consensus 61 ----------------------------~~~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~ 112 (123)
|..+++++.+|++.+++++|.++.+.++.++...+.. -...+..-+|+.
T Consensus 159 dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s---~~~klysl~Gs~ 235 (294)
T PF02273_consen 159 DLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS---NKCKLYSLPGSS 235 (294)
T ss_dssp EEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT-----EEEEEETT-S
T ss_pred cccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC---CceeEEEecCcc
Confidence 0134788999999999999999999887777776664 267888889999
Q ss_pred eee
Q 040163 113 HGW 115 (123)
Q Consensus 113 HGF 115 (123)
|--
T Consensus 236 HdL 238 (294)
T PF02273_consen 236 HDL 238 (294)
T ss_dssp S-T
T ss_pred chh
Confidence 853
No 92
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.67 E-value=0.0081 Score=39.86 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=40.1
Q ss_pred cCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 67 AVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 67 ~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
+-+.|+|++.++.|+.+|.+....+.+.|.. ..+.+.+|.+||...
T Consensus 32 ~~~~piL~l~~~~Dp~TP~~~a~~~~~~l~~-----s~lvt~~g~gHg~~~ 77 (103)
T PF08386_consen 32 PGAPPILVLGGTHDPVTPYEGARAMAARLPG-----SRLVTVDGAGHGVYA 77 (103)
T ss_pred CCCCCEEEEecCcCCCCcHHHHHHHHHHCCC-----ceEEEEeccCcceec
Confidence 3469999999999999999999999888863 489999999999864
No 93
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.60 E-value=0.0036 Score=49.65 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=37.8
Q ss_pred ccccCC-CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 64 DIEAVE-VPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 64 d~~~I~-~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.+++|. +|+++++|+.|+++|.+....+.+.+ ...++++-+|++|-=
T Consensus 258 ~~~~i~~~pvlii~G~~D~~~p~~~~~~~~~~~-----pn~~~~~I~~~gH~~ 305 (326)
T KOG1454|consen 258 LIKKIWKCPVLIIWGDKDQIVPLELAEELKKKL-----PNAELVEIPGAGHLP 305 (326)
T ss_pred hhccccCCceEEEEcCcCCccCHHHHHHHHhhC-----CCceEEEeCCCCccc
Confidence 467777 99999999999999999555555554 256999999999964
No 94
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=96.56 E-value=0.023 Score=41.78 Aligned_cols=77 Identities=17% Similarity=0.027 Sum_probs=50.5
Q ss_pred cceeccHHHHHHhhcCCCccEEEEecCCCC-----------------------Cc---cc-----cccC--CCcEEEEec
Q 040163 31 VPNADRTEVAVELAKHEFIQAVVLLHPSFV-----------------------TV---DD-----IEAV--EVPIAVLRA 77 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~~~v~A~v~~hps~~-----------------------~~---~d-----~~~I--~~Pvl~~~g 77 (123)
||=|+||.+|..+|..-.+++ |-..|+.. +. ++ ...+ ..+++++.+
T Consensus 64 iGSSlGG~~A~~La~~~~~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~~~lvll~ 142 (187)
T PF05728_consen 64 IGSSLGGFYATYLAERYGLPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPERYLVLLQ 142 (187)
T ss_pred EEEChHHHHHHHHHHHhCCCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCccEEEEEe
Confidence 677999999999987655666 44445421 00 11 1123 367999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 78 EFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 78 ~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.|.++|.++ ..+..+ ++...+.+|.+|+|.
T Consensus 143 ~~DEvLd~~~---a~~~~~-----~~~~~i~~ggdH~f~ 173 (187)
T PF05728_consen 143 TGDEVLDYRE---AVAKYR-----GCAQIIEEGGDHSFQ 173 (187)
T ss_pred cCCcccCHHH---HHHHhc-----CceEEEEeCCCCCCc
Confidence 9999999843 233332 344557788899995
No 95
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=96.32 E-value=0.0062 Score=49.22 Aligned_cols=107 Identities=20% Similarity=0.183 Sum_probs=67.8
Q ss_pred hhhHHHHHHhchhhhcC---C---Cceeeccc-ccceeccHHHHHHhhc-C-----------------------------
Q 040163 4 LTLIKDYIQALDPVWAQ---P---EKIWISRF-RVPNADRTEVAVELAK-H----------------------------- 46 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~---~---~~~~~~~~-~vGfC~GG~~a~~~a~-~----------------------------- 46 (123)
++-.+|+...|++|..+ | .|+...+. ++||++||.-++.++. +
T Consensus 130 ~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~~~~~~~~~~~~~~~~~l~ 209 (365)
T COG4188 130 WERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHCESASRICLDPPGLNGRLLN 209 (365)
T ss_pred hcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccHHHHHHHhhhhhhcccCCCCcChhhhc
Confidence 34567888888888877 6 12222222 2688999998887642 1
Q ss_pred ----------------CCccEEEEecCCCC---CccccccCCCcEEEEecCCCCCCCHHH-HHHHHHHHhhcCCCCeEEE
Q 040163 47 ----------------EFIQAVVLLHPSFV---TVDDIEAVEVPIAVLRAEFDQISPLAL-LKQFEEVLTDKSEVDGYVK 106 (123)
Q Consensus 47 ----------------~~v~A~v~~hps~~---~~~d~~~I~~Pvl~~~g~~D~~~p~e~-~~~~~~~l~~~~~~~~~~~ 106 (123)
+.++++++.-|..- ..+-+.+++.|+++..+..|...|.+. ....-..| .+....+.
T Consensus 210 q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~D~~aP~~~~~~~~f~~l---~g~~k~~~ 286 (365)
T COG4188 210 QCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAGSADGFAPPVTEQIRPFGYL---PGALKYLR 286 (365)
T ss_pred cccccccchhhhccccccceeeeeccCCcccccccccceeeecceeeecccccccCCcccccccccccC---Ccchhhee
Confidence 24677777766532 236688999999999999999777652 22222222 23333455
Q ss_pred EeCCCCe
Q 040163 107 IFLKFSH 113 (123)
Q Consensus 107 vYpG~~H 113 (123)
.-||+.|
T Consensus 287 ~vp~a~h 293 (365)
T COG4188 287 LVPGATH 293 (365)
T ss_pred ecCCCcc
Confidence 5667776
No 96
>PRK03204 haloalkane dehalogenase; Provisional
Probab=96.24 E-value=0.008 Score=46.00 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=34.1
Q ss_pred CCcEEEEecCCCCCCCHH-HHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 69 EVPIAVLRAEFDQISPLA-LLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e-~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
++|+++++|++|..+|++ ..+.+.+.+. ..+++++|+++|...
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip-----~~~~~~i~~aGH~~~ 270 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFP-----DHVLVELPNAKHFIQ 270 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcC-----CCeEEEcCCCccccc
Confidence 799999999999998765 4456666654 358889999999863
No 97
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=96.10 E-value=0.011 Score=47.83 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=35.2
Q ss_pred cCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 67 AVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 67 ~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+|++|+++++|+.|.++|.+..+++.+.. +.+++++|+++|-.
T Consensus 323 ~i~vPvLiI~G~~D~~v~~~~~~~~a~~~------~a~l~vIp~aGH~~ 365 (383)
T PLN03084 323 NWKTPITVCWGLRDRWLNYDGVEDFCKSS------QHKLIELPMAGHHV 365 (383)
T ss_pred cCCCCEEEEeeCCCCCcCHHHHHHHHHhc------CCeEEEECCCCCCc
Confidence 47999999999999999998766655542 45889999999965
No 98
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=96.09 E-value=0.02 Score=46.42 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=75.6
Q ss_pred chhhhHHHHHHhchhhhcCCCceeeccccc-ceeccHHHHHHhhc-CCCccEEEEe-----------------cC-CCCC
Q 040163 2 RALTLIKDYIQALDPVWAQPEKIWISRFRV-PNADRTEVAVELAK-HEFIQAVVLL-----------------HP-SFVT 61 (123)
Q Consensus 2 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~v-GfC~GG~~a~~~a~-~~~v~A~v~~-----------------hp-s~~~ 61 (123)
||++++++..+.. ..+.+.+|+| |-|=-|+-+++.|. .++|+|++.. |+ .+.-
T Consensus 154 rAMD~vq~~~~~~-------~~~~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~ 226 (367)
T PF10142_consen 154 RAMDAVQEFLKKK-------FGVNIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSF 226 (367)
T ss_pred HHHHHHHHHHHhh-------cCCCccEEEEeCCchHhHHHHHhhccCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCcc
Confidence 5566666655444 1234677754 77888999999876 5789988872 23 2110
Q ss_pred ----------------c------------cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCe
Q 040163 62 ----------------V------------DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 62 ----------------~------------~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~H 113 (123)
+ .-.++++.|-+++.|..|+.+.++...-+...|+. +-.+.+.|+++|
T Consensus 227 a~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G----~K~lr~vPN~~H 302 (367)
T PF10142_consen 227 AFQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG----EKYLRYVPNAGH 302 (367)
T ss_pred chhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC----CeeEEeCCCCCc
Confidence 0 01357899999999999999999999999999874 568999999999
Q ss_pred eec
Q 040163 114 GWT 116 (123)
Q Consensus 114 GF~ 116 (123)
+-.
T Consensus 303 ~~~ 305 (367)
T PF10142_consen 303 SLI 305 (367)
T ss_pred ccc
Confidence 864
No 99
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.04 E-value=0.012 Score=49.75 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=39.4
Q ss_pred cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 63 DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 63 ~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.++.+|++|++++.|++|+++|.+....+.+.+. ..+..++++++|--
T Consensus 409 ~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~-----~~~~~vL~~sGHi~ 456 (532)
T TIGR01838 409 LDLSKVKVPVYIIATREDHIAPWQSAYRGAALLG-----GPKTFVLGESGHIA 456 (532)
T ss_pred cchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCC-----CCEEEEECCCCCch
Confidence 3477899999999999999999998888877664 23566889999975
No 100
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=95.98 E-value=0.014 Score=43.61 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=48.0
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCCCCC
Q 040163 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRYNVE 122 (123)
Q Consensus 68 I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~~~~ 122 (123)
..+|-+++++++|.++|.++++++.+..++ .|.+.+.+.|++..|-=..|.+++
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~-~G~~V~~~~f~~S~HV~H~r~~p~ 230 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARR-KGWDVRAEKFEDSPHVAHLRKHPD 230 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHH-cCCeEEEecCCCCchhhhcccCHH
Confidence 468999999999999999999999999998 578899999999999877776653
No 101
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=95.94 E-value=0.016 Score=44.60 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=38.7
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+..+.+++|.+|.++|.+.++++.+...+. ....++.. +|..|+|+
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~~~l~~~~~~~-~~~~~v~~-~~i~HaFc 266 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETRDELIERYPGH-EPDVVVDE-EGIPHAFC 266 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHcCCC-CCeEEEec-CCCCCCCC
Confidence 468999999999999999999999998852 34566666 99999995
No 102
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=95.93 E-value=0.047 Score=41.21 Aligned_cols=87 Identities=15% Similarity=-0.007 Sum_probs=51.5
Q ss_pred HHHhchhhhcCCCceeecccccceeccHHHHHHhhc-CC-CccEEEEecCCC--------C------------Ccc----
Q 040163 10 YIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK-HE-FIQAVVLLHPSF--------V------------TVD---- 63 (123)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~-~~-~v~A~v~~hps~--------~------------~~~---- 63 (123)
+.+.++++..+..-..-+.|+.|+|.||..+..++. .| .|.|+.. |... . .+.
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~-~sG~~~~~a~~~~~a~~~m~~g~~~~p~~~~~ 159 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAV-VSGVPYGCAASGASALSAMRSGPRPAPAAAWG 159 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEe-ecccccccccCcccHHHHhhCCCCCChHHHHH
Confidence 344456665544211123345788999999999875 34 4554433 2110 0 000
Q ss_pred ---cc-ccCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 040163 64 ---DI-EAVEVPIAVLRAEFDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 64 ---d~-~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~ 97 (123)
+. ..-..|++++||+.|..+.+...+++.+.+..
T Consensus 160 a~~~~g~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~ 197 (220)
T PF10503_consen 160 ARSDAGAYPGYPRIVFHGTADTTVNPQNADQLVAQWLN 197 (220)
T ss_pred hhhhccCCCCCCEEEEecCCCCccCcchHHHHHHHHHH
Confidence 00 00125999999999999999877777666654
No 103
>PLN02872 triacylglycerol lipase
Probab=95.93 E-value=0.015 Score=47.29 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=39.0
Q ss_pred cccC--CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 65 IEAV--EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 65 ~~~I--~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
+.+| ++|+++++|++|..+++++.+.+.+.+.. ..+++.+|+.+|.
T Consensus 319 l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~----~~~l~~l~~~gH~ 366 (395)
T PLN02872 319 LSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS----KPELLYLENYGHI 366 (395)
T ss_pred cccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC----ccEEEEcCCCCCH
Confidence 5677 58999999999999999998888888763 2478889999997
No 104
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=95.87 E-value=0.0063 Score=46.23 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=40.4
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCC
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRY 119 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~ 119 (123)
+++||+|.++++|+.|++++.+.+--+...+. ..+++++|...|-|.-|+
T Consensus 212 lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~-----~a~~~~~peGkHn~hLry 261 (277)
T KOG2984|consen 212 LPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKS-----LAKVEIHPEGKHNFHLRY 261 (277)
T ss_pred cccccCCeeEeeCCcCCCCCCCCccchhhhcc-----cceEEEccCCCcceeeec
Confidence 68899999999999999999886554444432 458889999999997664
No 105
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=95.76 E-value=0.018 Score=49.07 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=38.7
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
|+.+|++|++++.+++|+++|.+.+..+.+.+.. +.+++.++| +|=
T Consensus 436 dL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs----~~~fvl~~g-GHI 481 (560)
T TIGR01839 436 DLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGG----KRRFVLSNS-GHI 481 (560)
T ss_pred chhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCC----CeEEEecCC-Ccc
Confidence 3678999999999999999999999999887743 578888875 663
No 106
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=95.69 E-value=0.018 Score=47.21 Aligned_cols=49 Identities=22% Similarity=0.128 Sum_probs=38.2
Q ss_pred cccCC-CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCe
Q 040163 65 IEAVE-VPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 65 ~~~I~-~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~H 113 (123)
..+|+ +|++.+.|++|+++|+++...+.+....-+..+.+.++.++++|
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH 382 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGH 382 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCe
Confidence 57899 99999999999999999999998885321122455666667788
No 107
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=95.61 E-value=0.014 Score=42.61 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=29.8
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
+.+|++|+++++|++|+.+. .+ .++. ..+++++|+++|-+.
T Consensus 184 l~~i~~P~lii~G~~D~~~~-----~~----~~~~--~~~~~~i~~~gH~~~ 224 (242)
T PRK11126 184 LQALTFPFYYLCGERDSKFQ-----AL----AQQL--ALPLHVIPNAGHNAH 224 (242)
T ss_pred hhccCCCeEEEEeCCcchHH-----HH----HHHh--cCeEEEeCCCCCchh
Confidence 45789999999999997442 11 1211 568999999999663
No 108
>PRK07868 acyl-CoA synthetase; Validated
Probab=95.60 E-value=0.021 Score=51.26 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=37.6
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEE-EEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYV-KIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~-~vYpG~~HGF 115 (123)
+.+|++|+|+++|+.|+++|++..+.+.+.+.. .++ ++.++++|--
T Consensus 293 L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~-----a~~~~~~~~~GH~g 339 (994)
T PRK07868 293 LADITCPVLAFVGEVDDIGQPASVRGIRRAAPN-----AEVYESLIRAGHFG 339 (994)
T ss_pred hhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC-----CeEEEEeCCCCCEe
Confidence 568999999999999999999998888777643 244 5668899974
No 109
>PRK04940 hypothetical protein; Provisional
Probab=95.56 E-value=0.095 Score=38.55 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=51.8
Q ss_pred cceeccHHHHHHhhcCCCccEEEE---ecCCC--------------CCcc---ccccCCCc--EEEEecCCCCCCCHHHH
Q 040163 31 VPNADRTEVAVELAKHEFIQAVVL---LHPSF--------------VTVD---DIEAVEVP--IAVLRAEFDQISPLALL 88 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~~~v~A~v~---~hps~--------------~~~~---d~~~I~~P--vl~~~g~~D~~~p~e~~ 88 (123)
||=|+||-+|..+|..-.++|+.. .+|.. ++.+ +++ ++.| ++++..+.|.+.+..+
T Consensus 65 iGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL~-~~~p~r~~vllq~gDEvLDyr~- 142 (180)
T PRK04940 65 CGVGLGGYWAERIGFLCGIRQVIFNPNLFPEENMEGKIDRPEEYADIATKCVTNFR-EKNRDRCLVILSRNDEVLDSQR- 142 (180)
T ss_pred EEeChHHHHHHHHHHHHCCCEEEECCCCChHHHHHHHhCCCcchhhhhHHHHHHhh-hcCcccEEEEEeCCCcccCHHH-
Confidence 677999999999987656666664 23311 1111 222 4555 5889999998887653
Q ss_pred HHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 89 KQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 89 ~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
..+.+.. -+.+.+.+|..|+|.
T Consensus 143 --a~~~y~~----~y~~~v~~GGdH~f~ 164 (180)
T PRK04940 143 --TAEELHP----YYEIVWDEEQTHKFK 164 (180)
T ss_pred --HHHHhcc----CceEEEECCCCCCCC
Confidence 3444432 236899999999995
No 110
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.068 Score=42.23 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=56.1
Q ss_pred ceeecccccceeccHHHHHHhhcC--CCccEEEEecCCCCCc--------cccc------cCC---CcEEEEecCCCCCC
Q 040163 23 KIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLHPSFVTV--------DDIE------AVE---VPIAVLRAEFDQIS 83 (123)
Q Consensus 23 ~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~hps~~~~--------~d~~------~I~---~Pvl~~~g~~D~~~ 83 (123)
+.+-.++..|.|+||..++..+.+ ..|-.+.+-=|++-.. +... .+. .=++.--++.+.++
T Consensus 174 ~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~ 253 (299)
T COG2382 174 ADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQPQGEVAESLKILHAIGTDERIVLTTGGEEGDFL 253 (299)
T ss_pred ccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccccccchhhhhhhhhccCccceEEeecCCcccccc
Confidence 444556667999999999998754 3455555544443211 1111 111 22333344444444
Q ss_pred CHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 84 PLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 84 p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
++ .+++.+.|++ .+.++.+..||| +|=+.
T Consensus 254 ~p--Nr~L~~~L~~-~g~~~~yre~~G-gHdw~ 282 (299)
T COG2382 254 RP--NRALAAQLEK-KGIPYYYREYPG-GHDWA 282 (299)
T ss_pred ch--hHHHHHHHHh-cCCcceeeecCC-CCchh
Confidence 44 4689999998 589999999999 99774
No 111
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=95.31 E-value=0.027 Score=43.52 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=34.7
Q ss_pred hhHHHHHHhchhhhcCCC-ceeecccccceeccHHHHHHhhcC--CCccEEEEecC
Q 040163 5 TLIKDYIQALDPVWAQPE-KIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLHP 57 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~-~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~hp 57 (123)
+.++|+.++++++++++. ++. .+|+||||.+++.++.. ..++..+..-|
T Consensus 81 ~~~~Dv~~ai~~L~~~~~~~v~----LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P 132 (266)
T TIGR03101 81 VWKEDVAAAYRWLIEQGHPPVT----LWGLRLGALLALDAANPLAAKCNRLVLWQP 132 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCEE----EEEECHHHHHHHHHHHhCccccceEEEecc
Confidence 467999999999987642 333 38999999999988753 34555555434
No 112
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=95.30 E-value=0.03 Score=41.40 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=44.0
Q ss_pred cccccCC-CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 63 DDIEAVE-VPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 63 ~d~~~I~-~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
..+.+++ .|+|+++|.+|..+|.+....+.+....+ +.+..++++..|.+..
T Consensus 225 ~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~---~~~~~~~~~~~H~~~~ 277 (299)
T COG1073 225 DDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER---PKKLLFVPGGGHIDLY 277 (299)
T ss_pred hhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC---CceEEEecCCcccccc
Confidence 4566677 79999999999999999888888887752 6788999999999864
No 113
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=95.07 E-value=0.027 Score=40.08 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=29.9
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc-C-CCccEEEEecC
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK-H-EFIQAVVLLHP 57 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~-~-~~v~A~v~~hp 57 (123)
++.+|+.+.++.+... ++.+ ||+||||.+++.++. . ..|+..+..=+
T Consensus 29 ~~~~~~~~~~~~l~~~--~~~~----vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~ 77 (230)
T PF00561_consen 29 DLAADLEALREALGIK--KINL----VGHSMGGMLALEYAAQYPERVKKLVLISP 77 (230)
T ss_dssp HHHHHHHHHHHHHTTS--SEEE----EEETHHHHHHHHHHHHSGGGEEEEEEESE
T ss_pred HHHHHHHHHHHHhCCC--CeEE----EEECCChHHHHHHHHHCchhhcCcEEEee
Confidence 4445555555544222 3333 899999999999875 2 35777776543
No 114
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=94.94 E-value=0.084 Score=44.77 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHHhchhhhcC-C-CceeecccccceeccHHHHH-----HhhcC-C-CccEEEEecCCCCCccccccCCCcEEEEecC
Q 040163 8 KDYIQALDPVWAQ-P-EKIWISRFRVPNADRTEVAV-----ELAKH-E-FIQAVVLLHPSFVTVDDIEAVEVPIAVLRAE 78 (123)
Q Consensus 8 ~d~~~~~~~l~~~-~-~~~~~~~~~vGfC~GG~~a~-----~~a~~-~-~v~A~v~~hps~~~~~d~~~I~~Pvl~~~g~ 78 (123)
+++.++++.+.+. + .++. .|||||||.++. ..+.. + .++..+.+ .+.+...+ .|+
T Consensus 246 ~~i~~al~~v~~~~g~~kv~----lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll-~t~~Df~~-----------~G~ 309 (532)
T TIGR01838 246 DGVIAALEVVEAITGEKQVN----CVGYCIGGTLLSTALAYLAARGDDKRIKSATFF-TTLLDFSD-----------PGE 309 (532)
T ss_pred HHHHHHHHHHHHhcCCCCeE----EEEECcCcHHHHHHHHHHHHhCCCCccceEEEE-ecCcCCCC-----------cch
Confidence 4567778887643 1 1333 389999999852 22333 3 46554443 33332221 255
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q 040163 79 FDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 79 ~D~~~p~e~~~~~~~~l~~ 97 (123)
.+.++..+.++.+++.+.+
T Consensus 310 l~~f~~~~~~~~~e~~~~~ 328 (532)
T TIGR01838 310 LGVFVDEEIVAGIERQNGG 328 (532)
T ss_pred hhhhcCchhHHHHHHHHHh
Confidence 5555566666666666654
No 115
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.071 Score=46.11 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=72.3
Q ss_pred hhhHHHHHHhchhhhc----CCCceeecccccceeccHHHHHHhh-cCC-CccEEEEecC-----------C---CCC--
Q 040163 4 LTLIKDYIQALDPVWA----QPEKIWISRFRVPNADRTEVAVELA-KHE-FIQAVVLLHP-----------S---FVT-- 61 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~----~~~~~~~~~~~vGfC~GG~~a~~~a-~~~-~v~A~v~~hp-----------s---~~~-- 61 (123)
+|-++|.++...||.+ +|+|..+ .|||-||-++-... .+| .+.|+++--| . ..+
T Consensus 527 qN~f~Dfia~AeyLve~gyt~~~kL~i----~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ 602 (712)
T KOG2237|consen 527 QNSFDDFIACAEYLVENGYTQPSKLAI----EGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDY 602 (712)
T ss_pred cccHHHHHHHHHHHHHcCCCCccceeE----ecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhh
Confidence 5778999999999996 5567777 56799998865442 344 4566555222 1 111
Q ss_pred -----ccc------------cccCCC----c-EEEEecCCCCCCCHHHHHHHHHHHhhc----CC--CCeEEEEeCCCCe
Q 040163 62 -----VDD------------IEAVEV----P-IAVLRAEFDQISPLALLKQFEEVLTDK----SE--VDGYVKIFLKFSH 113 (123)
Q Consensus 62 -----~~d------------~~~I~~----P-vl~~~g~~D~~~p~e~~~~~~~~l~~~----~~--~~~~~~vYpG~~H 113 (123)
+++ +++|+. | +|+..+.+|+.+++-...++.+.|++. .. -+.-++++++++|
T Consensus 603 ee~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH 682 (712)
T KOG2237|consen 603 EEWGNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGH 682 (712)
T ss_pred cccCChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCcc
Confidence 011 334432 2 689999998888877777777777652 22 4678899999999
Q ss_pred ee
Q 040163 114 GW 115 (123)
Q Consensus 114 GF 115 (123)
|-
T Consensus 683 ~~ 684 (712)
T KOG2237|consen 683 GA 684 (712)
T ss_pred cc
Confidence 85
No 116
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=94.89 E-value=0.032 Score=46.90 Aligned_cols=46 Identities=13% Similarity=-0.007 Sum_probs=36.7
Q ss_pred hhHHHHHHhchhhhcCCC---ceeecccccceeccHHHHHHhhcC--CCccEEEE
Q 040163 5 TLIKDYIQALDPVWAQPE---KIWISRFRVPNADRTEVAVELAKH--EFIQAVVL 54 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~---~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~ 54 (123)
+..+|+.++++++..+|. ++++ +|+|+||..++.+|.. +.++|++.
T Consensus 77 ~~~~D~~~~i~~l~~q~~~~~~v~~----~G~S~GG~~a~~~a~~~~~~l~aiv~ 127 (550)
T TIGR00976 77 DEAADGYDLVDWIAKQPWCDGNVGM----LGVSYLAVTQLLAAVLQPPALRAIAP 127 (550)
T ss_pred ccchHHHHHHHHHHhCCCCCCcEEE----EEeChHHHHHHHHhccCCCceeEEee
Confidence 467899999999998863 5555 7889999999998763 56777776
No 117
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=94.42 E-value=0.089 Score=40.14 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=33.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
++|++++.|++|..+|++..+.+.+.+.. .++++.+ ++|.-
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~~-----~~~~~l~-~gH~p 251 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWPP-----SQVYELE-SDHSP 251 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCCc-----cEEEEEC-CCCCc
Confidence 78999999999999999988888777642 2677777 68864
No 118
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=94.42 E-value=0.059 Score=45.68 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=35.4
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHH-------HHHHHHhhcCCCCeEEEEeCCCCe
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLK-------QFEEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~-------~~~~~l~~~~~~~~~~~vYpG~~H 113 (123)
|+++|++|++++.+.-|.++|++|.- .-.+.++. .+...-.-+-+..+|
T Consensus 292 DLr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a-~gQ~IVY~~h~~vGH 347 (581)
T PF11339_consen 292 DLRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKA-AGQTIVYLLHESVGH 347 (581)
T ss_pred ehhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHh-CCCEEEEEecCCCCc
Confidence 47899999999999999999999873 33455555 344444445566666
No 119
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=94.22 E-value=0.084 Score=42.12 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=34.1
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
..+|++|+++++|++|++.+.....+..+..-.+ -.+.++++|++|-
T Consensus 254 ~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~---l~~~vv~~~~gH~ 300 (322)
T KOG4178|consen 254 LAKITIPVLFIWGDLDPVLPYPIFGELYRKDVPR---LTERVVIEGIGHF 300 (322)
T ss_pred ccccccceEEEEecCcccccchhHHHHHHHhhcc---ccceEEecCCccc
Confidence 4568999999999999999988333333333221 2378999999993
No 120
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=94.13 E-value=0.042 Score=44.11 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=35.1
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCe-eec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSH-GWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~H-GF~ 116 (123)
+++|++|+|++++.|||+++++.+...+..+. +++.+++..+ .+| ||-
T Consensus 270 L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~~n--p~v~l~~t~~--GGHvGfl 318 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMPPEVIPKLQEMLN--PNVLLQLTEH--GGHVGFL 318 (345)
T ss_pred ccccccceEEEecCCCCCCChhhCCcchhcCC--CceEEEeecC--CceEEec
Confidence 67899999999999999999988777666533 4455555444 344 663
No 121
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=94.02 E-value=0.03 Score=44.34 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=11.0
Q ss_pred cccCCCcEEEEecCCCCCCCHH-HHHHHHHHHhhcCCC---CeEEEEeCCCCeeeccC
Q 040163 65 IEAVEVPIAVLRAEFDQISPLA-LLKQFEEVLTDKSEV---DGYVKIFLKFSHGWTVR 118 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e-~~~~~~~~l~~~~~~---~~~~~vYpG~~HGF~~r 118 (123)
+.+|+.|+|++++++|+.+|.. +.+++.+.+++..+. .-.-.+.||+.|....+
T Consensus 228 fG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~ 285 (303)
T PF08538_consen 228 FGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGP 285 (303)
T ss_dssp GGG--S-EEEEEE--TT-----------------------------------------
T ss_pred hccCCCceEEEecCCCceeccccccccccccccccccccccccccccccccccccccc
Confidence 5778999999999999999976 556666666653321 11246899999998643
No 122
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=93.97 E-value=0.26 Score=36.65 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=55.4
Q ss_pred hhHHHHHHhchhhhcCCCceeeccc-ccceeccHHHH-HHhhc-----CCCc----------cEEEEecCCC-C------
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRF-RVPNADRTEVA-VELAK-----HEFI----------QAVVLLHPSF-V------ 60 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~-~vGfC~GG~~a-~~~a~-----~~~v----------~A~v~~hps~-~------ 60 (123)
+.-.|+...+++-..+-. ..++ .||||||+-+. +.+.. +..| ++-+-+|++. +
T Consensus 49 ~~a~Dl~~~i~~y~~~w~---~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~~~~ 125 (192)
T PF06057_consen 49 QTAADLARIIRHYRARWG---RKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMGGDD 125 (192)
T ss_pred HHHHHHHHHHHHHHHHhC---CceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCCCCc
Confidence 445677777777665532 2334 47999999553 22222 1223 3444466541 1
Q ss_pred ----CccccccCCC-cEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 61 ----TVDDIEAVEV-PIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 61 ----~~~d~~~I~~-Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+..++.+|.. |+++++|++|.-.+- ..+++ ...++..-|| +|=|
T Consensus 126 ~~~~~~pei~~l~~~~v~CiyG~~E~d~~c-------p~l~~---~~~~~i~lpG-gHHf 174 (192)
T PF06057_consen 126 AAYPVIPEIAKLPPAPVQCIYGEDEDDSLC-------PSLRQ---PGVEVIALPG-GHHF 174 (192)
T ss_pred ccCCchHHHHhCCCCeEEEEEcCCCCCCcC-------ccccC---CCcEEEEcCC-CcCC
Confidence 1245677764 999999988743211 12332 3678888887 4545
No 123
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=93.69 E-value=0.087 Score=40.08 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=70.4
Q ss_pred hHHHHHHhchhhhcCCC---ceeecccccceeccHHHHHHhhc--CCCccEEEEecCC---------------------C
Q 040163 6 LIKDYIQALDPVWAQPE---KIWISRFRVPNADRTEVAVELAK--HEFIQAVVLLHPS---------------------F 59 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~---~~~~~~~~vGfC~GG~~a~~~a~--~~~v~A~v~~hps---------------------~ 59 (123)
=.+|...+++++..||- |+|+ .|.|++|..++.+|. .+.++|++..-+. +
T Consensus 82 e~~D~~d~I~W~~~Qpws~G~VGm----~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~~~~w 157 (272)
T PF02129_consen 82 EAQDGYDTIEWIAAQPWSNGKVGM----YGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLGFFAGW 157 (272)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEE----EEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEe----eccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccccchhHH
Confidence 46899999999999984 7777 566999999999876 3678998883211 0
Q ss_pred -------------C------------------------------------Cc------------cccccCCCcEEEEecC
Q 040163 60 -------------V------------------------------------TV------------DDIEAVEVPIAVLRAE 78 (123)
Q Consensus 60 -------------~------------------------------------~~------------~d~~~I~~Pvl~~~g~ 78 (123)
. +. +.+.+|++|+|+..|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l~v~Gw 237 (272)
T PF02129_consen 158 EDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVLIVGGW 237 (272)
T ss_dssp HHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEEEEEET
T ss_pred HHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEEEeccc
Confidence 0 00 0146799999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-CCeEEEEeCCCCee
Q 040163 79 FDQISPLALLKQFEEVLTDKSE-VDGYVKIFLKFSHG 114 (123)
Q Consensus 79 ~D~~~p~e~~~~~~~~l~~~~~-~~~~~~vYpG~~HG 114 (123)
.|..+. ....+..+.|++ .+ ++..+.+-|+ .|+
T Consensus 238 ~D~~~~-~~~~~~~~~l~~-~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 238 YDTLFL-RGALRAYEALRA-PGSKPQRLIIGPW-THG 271 (272)
T ss_dssp TCSSTS-HHHHHHHHHHCT-TSTC-EEEEEESE-STT
T ss_pred CCcccc-hHHHHHHHHhhc-CCCCCCEEEEeCC-CCC
Confidence 997777 455555566666 34 5668888774 553
No 124
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=93.68 E-value=0.062 Score=39.11 Aligned_cols=46 Identities=22% Similarity=0.102 Sum_probs=27.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 70 VPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 70 ~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
+|..+....+|+....+.. ...+.+.+......+++..+| +|=+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~v~G-~H~~~l 214 (229)
T PF00975_consen 169 VPITLFYALDDPLVSMDRL-EEADRWWDYTSGDVEVHDVPG-DHFSML 214 (229)
T ss_dssp SEEEEEEECSSSSSSHHCG-GHHCHHHGCBSSSEEEEEESS-ETTGHH
T ss_pred CcEEEEecCCCccccchhh-hhHHHHHHhcCCCcEEEEEcC-CCcEec
Confidence 4678888888877655411 122224444445678888886 776543
No 125
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=93.48 E-value=0.2 Score=34.81 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=35.0
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
..++++|+++++|+.|.+.|.+....+.+.+. + ..++.+.++.+|...
T Consensus 217 ~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~---~-~~~~~~~~~~gH~~~ 264 (282)
T COG0596 217 LARITVPTLIIHGEDDPVVPAELARRLAAALP---N-DARLVVIPGAGHFPH 264 (282)
T ss_pred hccCCCCeEEEecCCCCcCCHHHHHHHHhhCC---C-CceEEEeCCCCCcch
Confidence 55678999999999997777665333333332 1 468999999999874
No 126
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=93.24 E-value=0.17 Score=41.92 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=36.2
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCe
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~H 113 (123)
|+.+|+||++++.+++|++.|.+.+......+.. ++++...+ .+|
T Consensus 325 dL~~It~pvy~~a~~~DhI~P~~Sv~~g~~l~~g----~~~f~l~~-sGH 369 (445)
T COG3243 325 DLGDITCPVYNLAAEEDHIAPWSSVYLGARLLGG----EVTFVLSR-SGH 369 (445)
T ss_pred chhhcccceEEEeecccccCCHHHHHHHHHhcCC----ceEEEEec-Cce
Confidence 3678999999999999999999999999888853 45555553 455
No 127
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=92.83 E-value=0.77 Score=35.77 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=50.1
Q ss_pred cceeccHHHHHHh-hcC-CCccEEEEecCCCCCc--------cccccC-CCcEEEEecCC--C---CCCCHHHH---HHH
Q 040163 31 VPNADRTEVAVEL-AKH-EFIQAVVLLHPSFVTV--------DDIEAV-EVPIAVLRAEF--D---QISPLALL---KQF 91 (123)
Q Consensus 31 vGfC~GG~~a~~~-a~~-~~v~A~v~~hps~~~~--------~d~~~I-~~Pvl~~~g~~--D---~~~p~e~~---~~~ 91 (123)
.|+|+||-+++.. ... ..|....+.=||+-.. +..... ..++.+..|.. | .....+.. .+.
T Consensus 142 ~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~~~l~~~~~~~~~~~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 142 IGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNEAILREIESLKLLKTKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred eeecchhHHHHHHHhcCcchhceeeeecchhhhCCHHHhccccccccCCCcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 7899999999885 344 5678888877874321 111111 23344444433 3 23333333 333
Q ss_pred HHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 92 EEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 92 ~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
.+.++++.+....+..||+.+||=.
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~~~ 246 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHGSV 246 (264)
T ss_pred HHHHhhccCCceEecccccccccch
Confidence 3344443567788999999999853
No 128
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=92.53 E-value=0.32 Score=39.02 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=76.2
Q ss_pred HHHHHHhchhhhcC--------CCceeecccccceeccHHHHHHhhc--------CCCccEEEEecCCCCC----cc---
Q 040163 7 IKDYIQALDPVWAQ--------PEKIWISRFRVPNADRTEVAVELAK--------HEFIQAVVLLHPSFVT----VD--- 63 (123)
Q Consensus 7 ~~d~~~~~~~l~~~--------~~~~~~~~~~vGfC~GG~~a~~~a~--------~~~v~A~v~~hps~~~----~~--- 63 (123)
.+|...|+.|+..+ |.|+.+ .|=|-||-+|..++. .+.+++.+-.||-+.. .+
T Consensus 143 y~D~~~Al~w~~~~~~~~~~~D~~rv~l----~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~ 218 (336)
T KOG1515|consen 143 YDDGWAALKWVLKNSWLKLGADPSRVFL----AGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQ 218 (336)
T ss_pred chHHHHHHHHHHHhHHHHhCCCcccEEE----EccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHH
Confidence 57888888888765 345444 577999999877653 1467899999985321 00
Q ss_pred -------------------------------------------ccccCCC-cEEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 040163 64 -------------------------------------------DIEAVEV-PIAVLRAEFDQISPLALLKQFEEVLTDKS 99 (123)
Q Consensus 64 -------------------------------------------d~~~I~~-Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~ 99 (123)
+..-... |++++.++.|.+. ++...+.+.|++ .
T Consensus 219 ~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lkk-~ 295 (336)
T KOG1515|consen 219 QNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLKK-A 295 (336)
T ss_pred HhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHHHH-c
Confidence 0111233 4899999999665 456688888887 6
Q ss_pred CCCeEEEEeCCCCeeeccCCC
Q 040163 100 EVDGYVKIFLKFSHGWTVRYN 120 (123)
Q Consensus 100 ~~~~~~~vYpG~~HGF~~r~~ 120 (123)
|++.++..|++..|||....+
T Consensus 296 Gv~v~~~~~e~~~H~~~~~~~ 316 (336)
T KOG1515|consen 296 GVEVTLIHYEDGFHGFHILDP 316 (336)
T ss_pred CCeEEEEEECCCeeEEEecCC
Confidence 899999999999999976554
No 129
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=91.78 E-value=0.34 Score=37.33 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=62.6
Q ss_pred HHhchhhhcCCCceeeccc-ccceeccHHHHHHhhc----C---CCccEEEE----ecCCCC------------------
Q 040163 11 IQALDPVWAQPEKIWISRF-RVPNADRTEVAVELAK----H---EFIQAVVL----LHPSFV------------------ 60 (123)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~-~vGfC~GG~~a~~~a~----~---~~v~A~v~----~hps~~------------------ 60 (123)
.+++.+|+.+ ..+..| +||+||||..++.... . |.++=.|+ |-+...
T Consensus 90 ~~vl~~L~~~---Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~~gp~~~ 166 (255)
T PF06028_consen 90 KKVLKYLKKK---YHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNKNGPKSM 166 (255)
T ss_dssp HHHHHHHHHC---C--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CSTT-BSS-
T ss_pred HHHHHHHHHh---cCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcccCCccc
Confidence 3455555444 556777 7999999999877542 1 33432222 221110
Q ss_pred Cc--cc-c----ccC--CCcEEEEecC------CCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCC--CCeee
Q 040163 61 TV--DD-I----EAV--EVPIAVLRAE------FDQISPLALLKQFEEVLTDKSEVDGYVKIFLK--FSHGW 115 (123)
Q Consensus 61 ~~--~d-~----~~I--~~Pvl~~~g~------~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG--~~HGF 115 (123)
++ .+ + .++ ++.||-++|. .|-.||......++-.++.+ ...|+-++|.| +.|+-
T Consensus 167 ~~~y~~l~~~~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~-~~~Y~e~~v~G~~a~HS~ 237 (255)
T PF06028_consen 167 TPMYQDLLKNRRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNR-AKSYQEKTVTGKDAQHSQ 237 (255)
T ss_dssp -HHHHHHHHTHGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTT-SSEEEEEEEESGGGSCCG
T ss_pred CHHHHHHHHHHHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcc-cCceEEEEEECCCCcccc
Confidence 10 01 1 122 3669999998 89999999999999999874 45787777776 57764
No 130
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=91.63 E-value=0.27 Score=42.02 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHhchhhhcCC--CceeecccccceeccHHHHHH----hhc-CC--CccEEEE
Q 040163 7 IKDYIQALDPVWAQP--EKIWISRFRVPNADRTEVAVE----LAK-HE--FIQAVVL 54 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~--~~~~~~~~~vGfC~GG~~a~~----~a~-~~--~v~A~v~ 54 (123)
++.+.++++.+.+.- .++- .+|||+||.++.. +++ .+ .|+..+.
T Consensus 271 v~~i~~Ald~V~~~tG~~~vn----l~GyC~GGtl~a~~~a~~aA~~~~~~V~sltl 323 (560)
T TIGR01839 271 VDALKEAVDAVRAITGSRDLN----LLGACAGGLTCAALVGHLQALGQLRKVNSLTY 323 (560)
T ss_pred HHHHHHHHHHHHHhcCCCCee----EEEECcchHHHHHHHHHHHhcCCCCceeeEEe
Confidence 345667777776542 2333 3899999999875 333 22 4665554
No 131
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=91.38 E-value=0.055 Score=40.08 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=52.6
Q ss_pred ccccceeccHHHHHHhhc-C-CCccEEEEecCC------CC---------Cc---c-----ccccCCCcEEEEecCCCCC
Q 040163 28 RFRVPNADRTEVAVELAK-H-EFIQAVVLLHPS------FV---------TV---D-----DIEAVEVPIAVLRAEFDQI 82 (123)
Q Consensus 28 ~~~vGfC~GG~~a~~~a~-~-~~v~A~v~~hps------~~---------~~---~-----d~~~I~~Pvl~~~g~~D~~ 82 (123)
++..|+||||..|+.++. . +.+.++++.=|. +. .. . ....-..++.+..|+.|..
T Consensus 117 ~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~ 196 (251)
T PF00756_consen 117 RAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEF 196 (251)
T ss_dssp EEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTT
T ss_pred eEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcc
Confidence 344788999999999875 3 456766665321 10 00 0 1123356788889999973
Q ss_pred CC----------HHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 83 SP----------LALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 83 ~p----------~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.. .+....+.+.|+. .+.++..++|+| .|-|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~G-~H~~ 237 (251)
T PF00756_consen 197 GGWEDSAQILQFLANNRELAQLLKA-KGIPHTYHVFPG-GHDW 237 (251)
T ss_dssp HHCSHHHHHHHHHHHHHHHHHHCCC-EECTTESEEEHS-ESSH
T ss_pred cccccCHHHHHHHHHhHhhHHHHHH-cCCCceEEEecC-ccch
Confidence 21 1233344455555 368889999995 6766
No 132
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=90.64 E-value=0.38 Score=34.93 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=27.8
Q ss_pred hHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC--CC-ccEEEEe
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH--EF-IQAVVLL 55 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~--~~-v~A~v~~ 55 (123)
+.+|+.+.++.+.- +++- .||+||||.+++.++.. +. |+..+..
T Consensus 52 ~~~~l~~~l~~~~~--~~~~----lvG~S~Gg~va~~~a~~~~~~~v~~lvl~ 98 (242)
T PRK11126 52 VSRLLSQTLQSYNI--LPYW----LVGYSLGGRIAMYYACQGLAGGLCGLIVE 98 (242)
T ss_pred HHHHHHHHHHHcCC--CCeE----EEEECHHHHHHHHHHHhCCcccccEEEEe
Confidence 44566666655411 1222 37999999999998753 33 8776653
No 133
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=90.60 E-value=3.6 Score=32.42 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=65.0
Q ss_pred hhHHHHHHhchhhhcCCCc-eeecccccceeccHHHHHHhhcC---CCccEEEEecCCCCCc-------cccccCCCcEE
Q 040163 5 TLIKDYIQALDPVWAQPEK-IWISRFRVPNADRTEVAVELAKH---EFIQAVVLLHPSFVTV-------DDIEAVEVPIA 73 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~-~~~~~~~vGfC~GG~~a~~~a~~---~~v~A~v~~hps~~~~-------~d~~~I~~Pvl 73 (123)
.+.+=+.++++++..++.+ +-+ ||+..|+.+++++.+. +.+++-|..-|-.... +.+.+++.|||
T Consensus 175 ~~~ari~Aa~~~~~~~~~~~ivl----Ig~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~~n~~l~~~la~l~iPvL 250 (310)
T PF12048_consen 175 RLFARIEAAIAFAQQQGGKNIVL----IGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQPDRNPALAEQLAQLKIPVL 250 (310)
T ss_pred HHHHHHHHHHHHHHhcCCceEEE----EEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCcchhhhhHHHHhhccCCCEE
Confidence 4566678889999888875 544 7889999999997653 3477777765443321 45778999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHH-hhcCCCCeEEEEeCCCCeee
Q 040163 74 VLRAEFDQISPLALLKQFEEVL-TDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 74 ~~~g~~D~~~p~e~~~~~~~~l-~~~~~~~~~~~vYpG~~HGF 115 (123)
=++..+. -...+. .+.++.+ +.+.+..|.-..-++..|-+
T Consensus 251 Di~~~~~-~~~~~~-a~~R~~~a~r~~~~~YrQ~~L~~~~~~~ 291 (310)
T PF12048_consen 251 DIYSADN-PASQQT-AKQRKQAAKRNKKPDYRQIQLPGLPDNP 291 (310)
T ss_pred EEecCCC-hHHHHH-HHHHHHHHHhccCCCceeEecCCCCCCh
Confidence 9998883 222222 2232333 33222455444445555433
No 134
>COG0627 Predicted esterase [General function prediction only]
Probab=90.21 E-value=0.61 Score=37.08 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=37.2
Q ss_pred CCCcEEEEecCCCCCCC--HHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 68 VEVPIAVLRAEFDQISP--LALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 68 I~~Pvl~~~g~~D~~~p--~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
..-++++-+|..|.... ......+++++.+ .+.+.++..+++-.|+|
T Consensus 246 ~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~-~g~~~~~~~~~~G~Hsw 294 (316)
T COG0627 246 SPPELLIDNGPADFFLAANNLSTRAFAEALRA-AGIPNGVRDQPGGDHSW 294 (316)
T ss_pred CCCccccccccchhhhhhcccCHHHHHHHHHh-cCCCceeeeCCCCCcCH
Confidence 44678888999997775 2246788888887 57899999999999998
No 135
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=90.20 E-value=1.9 Score=31.76 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=49.5
Q ss_pred ccceeccHHHHHHhhcC--CCccEEEEecCCCC-----------Cccc--cccCCCcEEEEecCCCCCCCHHHHHHHHHH
Q 040163 30 RVPNADRTEVAVELAKH--EFIQAVVLLHPSFV-----------TVDD--IEAVEVPIAVLRAEFDQISPLALLKQFEEV 94 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~--~~v~A~v~~hps~~-----------~~~d--~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~ 94 (123)
.|+.|+|.-.++..+.. ..|++++..=|-.. +.+. ..++--|.++..+.+|++++.+..+.+.+.
T Consensus 63 lVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~~~~~~~tf~~~p~~~lpfps~vvaSrnDp~~~~~~a~~~a~~ 142 (181)
T COG3545 63 LVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEIRPKHLMTFDPIPREPLPFPSVVVASRNDPYVSYEHAEDLANA 142 (181)
T ss_pred EEEecccHHHHHHHHHhhhhccceEEEecCCCccccccchhhccccCCCccccCCCceeEEEecCCCCCCHHHHHHHHHh
Confidence 38999999999888753 46666665443321 1122 344567899999999999999998888888
Q ss_pred Hhh
Q 040163 95 LTD 97 (123)
Q Consensus 95 l~~ 97 (123)
+..
T Consensus 143 wgs 145 (181)
T COG3545 143 WGS 145 (181)
T ss_pred ccH
Confidence 765
No 136
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=90.04 E-value=0.53 Score=40.62 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred hhHHHHHHhchhhhc----CCCceeecccccceeccHHHHHHh-hcCC-CccEEEEecCC--------------CCC---
Q 040163 5 TLIKDYIQALDPVWA----QPEKIWISRFRVPNADRTEVAVEL-AKHE-FIQAVVLLHPS--------------FVT--- 61 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~----~~~~~~~~~~~vGfC~GG~~a~~~-a~~~-~v~A~v~~hps--------------~~~--- 61 (123)
+.-+|.+|....|.. .|+++++.|. |=||.++--+ ..+| .+.|+++-.|- ++.
T Consensus 479 ~vfdDf~AVaedLi~rgitspe~lgi~Gg----SNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG 554 (648)
T COG1505 479 NVFDDFIAVAEDLIKRGITSPEKLGIQGG----SNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYG 554 (648)
T ss_pred hhhHHHHHHHHHHHHhCCCCHHHhhhccC----CCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcC
Confidence 567899999999986 4569998776 7777664222 2334 56788775552 111
Q ss_pred ----ccc---------cccCCC-----cEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 62 ----VDD---------IEAVEV-----PIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 62 ----~~d---------~~~I~~-----Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
++| ..+++. |+|+-.+..|..|-|.-..++.++|++ .+.+.-+.+=-..+|+=+
T Consensus 555 ~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e-~~~pv~~~e~t~gGH~g~ 626 (648)
T COG1505 555 NPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQE-VGAPVLLREETKGGHGGA 626 (648)
T ss_pred CCCCHHHHHHHHhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHh-cCCceEEEeecCCcccCC
Confidence 122 334443 799999999999999999999999999 567777777777788753
No 137
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.68 E-value=0.38 Score=38.21 Aligned_cols=43 Identities=9% Similarity=-0.131 Sum_probs=27.1
Q ss_pred HHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC-CCc
Q 040163 7 IKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH-EFI 49 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~-~~v 49 (123)
.-.+.+.++.|..+-....-+.|..|||=||..+.+++.+ +.+
T Consensus 125 Vgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~ 168 (312)
T COG3509 125 VGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDI 168 (312)
T ss_pred HHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCccc
Confidence 3456667777765432111233457899999999998764 443
No 138
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=89.20 E-value=2.5 Score=36.89 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=72.2
Q ss_pred hhHHHHHHhchhhhcCC----CceeecccccceeccHHHHHHhh-c-CCCccEEEEecC------CCC------Cc---c
Q 040163 5 TLIKDYIQALDPVWAQP----EKIWISRFRVPNADRTEVAVELA-K-HEFIQAVVLLHP------SFV------TV---D 63 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~----~~~~~~~~~vGfC~GG~~a~~~a-~-~~~v~A~v~~hp------s~~------~~---~ 63 (123)
|-.+|.+++.++|..+. +++.+.|. |-||.+.--.+ . .+.++++++.-| +++ |. +
T Consensus 506 NTf~DFIa~a~~Lv~~g~~~~~~i~a~GG----SAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~ 581 (682)
T COG1770 506 NTFTDFIAAARHLVKEGYTSPDRIVAIGG----SAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWD 581 (682)
T ss_pred ccHHHHHHHHHHHHHcCcCCccceEEecc----CchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchh
Confidence 55789999999998765 35555444 89999864433 2 235666666444 111 11 1
Q ss_pred c------------------cccCC----CcEEEEecCCCCCCCHHHHHHHHHHHhhcCC---CCeEEEEeCCCCeee
Q 040163 64 D------------------IEAVE----VPIAVLRAEFDQISPLALLKQFEEVLTDKSE---VDGYVKIFLKFSHGW 115 (123)
Q Consensus 64 d------------------~~~I~----~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~---~~~~~~vYpG~~HGF 115 (123)
+ .++|+ -|+|+..|..|+.|+.=+-.+..+.|++. + -+.-+++=-.++||=
T Consensus 582 EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~-~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 582 EWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLREL-KTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred hhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccccchHHHHHHHHhhc-ccCCCcEEEEecccccCCC
Confidence 1 23443 46999999999999998889999998873 3 256778867799963
No 139
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=89.16 E-value=0.78 Score=37.31 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=32.6
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEV 101 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~ 101 (123)
+++|++|++++--+.|.++|+++.+++.+.|.. +++
T Consensus 302 l~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~-~~~ 337 (368)
T COG2021 302 LARIKAPVLVVGITSDWLFPPELQRALAEALPA-AGA 337 (368)
T ss_pred HhcCccCEEEEEecccccCCHHHHHHHHHhccc-cCc
Confidence 677999999999999999999999999999987 344
No 140
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=88.58 E-value=0.63 Score=37.50 Aligned_cols=48 Identities=21% Similarity=0.046 Sum_probs=32.0
Q ss_pred HHHHHHhchhhhcCC--CceeecccccceeccH-HHHHHhhcC---CCccEEEE-ecCC
Q 040163 7 IKDYIQALDPVWAQP--EKIWISRFRVPNADRT-EVAVELAKH---EFIQAVVL-LHPS 58 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~--~~~~~~~~~vGfC~GG-~~a~~~a~~---~~v~A~v~-~hps 58 (123)
.+|+...+++++++. .++. +||||+|| .++..++.+ ..++|+++ +-|.
T Consensus 131 t~D~~~~l~~l~~~~~~r~~~----avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~ 185 (345)
T COG0429 131 TEDIRFFLDWLKARFPPRPLY----AVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF 185 (345)
T ss_pred hhHHHHHHHHHHHhCCCCceE----EEEecccHHHHHHHHHhhccCcccceeeeeeCHH
Confidence 489999999998743 2433 49999999 666666653 34555544 3443
No 141
>PLN02965 Probable pheophorbidase
Probab=88.50 E-value=0.71 Score=34.28 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=28.5
Q ss_pred hHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC--CCccEEEEe
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH--EFIQAVVLL 55 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~ 55 (123)
+.+|+.+.++.|... .++- .||+||||.+++.++.. +.|+..+..
T Consensus 57 ~a~dl~~~l~~l~~~-~~~~----lvGhSmGG~ia~~~a~~~p~~v~~lvl~ 103 (255)
T PLN02965 57 YNRPLFALLSDLPPD-HKVI----LVGHSIGGGSVTEALCKFTDKISMAIYV 103 (255)
T ss_pred HHHHHHHHHHhcCCC-CCEE----EEecCcchHHHHHHHHhCchheeEEEEE
Confidence 455666666665211 1222 38999999999998763 467655543
No 142
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=88.44 E-value=0.47 Score=37.17 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=29.7
Q ss_pred hhHHHHHHhchhhhcCCCceeeccc-ccceeccHHHHHHhhcC--CCccEEEEec
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRF-RVPNADRTEVAVELAKH--EFIQAVVLLH 56 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~-~vGfC~GG~~a~~~a~~--~~v~A~v~~h 56 (123)
++.+|+.+.++.|.-. + .+ .||+||||.+++.+|.. ..|+..+..-
T Consensus 122 ~~a~dl~~ll~~l~l~--~----~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~ 170 (343)
T PRK08775 122 DQADAIALLLDALGIA--R----LHAFVGYSYGALVGLQFASRHPARVRTLVVVS 170 (343)
T ss_pred HHHHHHHHHHHHcCCC--c----ceEEEEECHHHHHHHHHHHHChHhhheEEEEC
Confidence 4556676666666211 1 12 48999999999998763 3566666553
No 143
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=88.32 E-value=5.6 Score=30.89 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=63.5
Q ss_pred hHHHHHHhchhhhc-----CC--Cceeecccc-cceeccHHHHHHhhcC-------CCccEEEEecCCC-----------
Q 040163 6 LIKDYIQALDPVWA-----QP--EKIWISRFR-VPNADRTEVAVELAKH-------EFIQAVVLLHPSF----------- 59 (123)
Q Consensus 6 ~~~d~~~~~~~l~~-----~~--~~~~~~~~~-vGfC~GG~~a~~~a~~-------~~v~A~v~~hps~----------- 59 (123)
-+++..+.++||.+ .| .+.-..+.. .|.|-||+.|+.++.. ..++|.+..=|..
T Consensus 63 ~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~~P~ 142 (259)
T PF12740_consen 63 EVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQTEPP 142 (259)
T ss_pred hHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCCCCc
Confidence 35666667777654 11 122233332 5999999999988753 2578888877643
Q ss_pred -CCc-cccccCCCcEEEEecCCCC--------CCCHH--HHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 60 -VTV-DDIEAVEVPIAVLRAEFDQ--------ISPLA--LLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 60 -~~~-~d~~~I~~Pvl~~~g~~D~--------~~p~e--~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
++. ..--+...|++++-.+-.. -+-++ .-+++..+.+. ..+++.+ ++.+|.
T Consensus 143 v~~~~p~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~---p~~~~v~-~~~GH~ 205 (259)
T PF12740_consen 143 VLTYTPQSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP---PSWHFVA-KDYGHM 205 (259)
T ss_pred cccCcccccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC---CEEEEEe-CCCCch
Confidence 111 2223356999999877773 23333 56677777754 2455555 677875
No 144
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=88.23 E-value=0.92 Score=36.80 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=32.1
Q ss_pred cCC--CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCee
Q 040163 67 AVE--VPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHG 114 (123)
Q Consensus 67 ~I~--~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HG 114 (123)
.++ +|++++||++| +++...-.++...+. ....++++-||++|=
T Consensus 299 ~l~~~~pv~fiyG~~d-WmD~~~g~~~~~~~~---~~~~~~~~v~~aGHh 344 (365)
T KOG4409|consen 299 ELKKDVPVTFIYGDRD-WMDKNAGLEVTKSLM---KEYVEIIIVPGAGHH 344 (365)
T ss_pred hhccCCCEEEEecCcc-cccchhHHHHHHHhh---cccceEEEecCCCce
Confidence 355 99999999999 555555455555442 347899999999994
No 145
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=87.27 E-value=0.53 Score=38.12 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=30.2
Q ss_pred hhhHHHHHHhchhhhcCCCceeeccc-ccceeccHHHHHHhhcC
Q 040163 4 LTLIKDYIQALDPVWAQPEKIWISRF-RVPNADRTEVAVELAKH 46 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~~~~~~~~~~-~vGfC~GG~~a~~~a~~ 46 (123)
-+|.+|+.+.+.||+.++..+.-... .-|||+||.++..+..+
T Consensus 192 ~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~ 235 (365)
T PF05677_consen 192 KDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKK 235 (365)
T ss_pred HHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHh
Confidence 47899999999999865432221111 25999999998776553
No 146
>PRK03592 haloalkane dehalogenase; Provisional
Probab=86.36 E-value=0.97 Score=34.15 Aligned_cols=45 Identities=7% Similarity=0.120 Sum_probs=29.7
Q ss_pred hHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC--CCccEEEEec
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLH 56 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~h 56 (123)
..+|+.+.++.+... ++-+ ||+||||.+++.++.. +.|+..+..-
T Consensus 79 ~a~dl~~ll~~l~~~--~~~l----vGhS~Gg~ia~~~a~~~p~~v~~lil~~ 125 (295)
T PRK03592 79 HARYLDAWFDALGLD--DVVL----VGHDWGSALGFDWAARHPDRVRGIAFME 125 (295)
T ss_pred HHHHHHHHHHHhCCC--CeEE----EEECHHHHHHHHHHHhChhheeEEEEEC
Confidence 456666666666322 3333 8999999999998763 3577666543
No 147
>PLN02872 triacylglycerol lipase
Probab=86.02 E-value=0.7 Score=37.69 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHHHHHhchhhhcCC-CceeecccccceeccHHHHHHhhcCC
Q 040163 7 IKDYIQALDPVWAQP-EKIWISRFRVPNADRTEVAVELAKHE 47 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~-~~~~~~~~~vGfC~GG~~a~~~a~~~ 47 (123)
..|+.+.++++.... .++. .||+||||..++.++..+
T Consensus 144 ~~Dl~a~id~i~~~~~~~v~----~VGhS~Gg~~~~~~~~~p 181 (395)
T PLN02872 144 LYDLAEMIHYVYSITNSKIF----IVGHSQGTIMSLAALTQP 181 (395)
T ss_pred HHHHHHHHHHHHhccCCceE----EEEECHHHHHHHHHhhCh
Confidence 369999999997542 3433 389999999998665543
No 148
>KOG3101 consensus Esterase D [General function prediction only]
Probab=85.82 E-value=0.99 Score=34.69 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=35.4
Q ss_pred cccCCCcEEEEecCCCCCCCHH-HHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 65 IEAVEVPIAVLRAEFDQISPLA-LLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e-~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
....+.-+|+-.|++|+..+.+ .-+.+.++-+.....+..++.-+|-.|..
T Consensus 211 y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~gyDHSY 262 (283)
T KOG3101|consen 211 YRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQEGYDHSY 262 (283)
T ss_pred cCCCCccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeecCCCcce
Confidence 3445666999999999988722 23355555554333678888889999886
No 149
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=85.81 E-value=0.64 Score=38.58 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=23.6
Q ss_pred HHHHHHhchhhhcCCCceeeccc-ccceeccHHHHHHhhc
Q 040163 7 IKDYIQALDPVWAQPEKIWISRF-RVPNADRTEVAVELAK 45 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~~~~~~~~-~vGfC~GG~~a~~~a~ 45 (123)
.+++..+++.+++... .... .||||.||.+...+++
T Consensus 164 ~e~l~~aid~v~~itg---~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 164 LEGLSEAIDTVKDITG---QKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred HHHHHHHHHHHHHHhC---ccccceeeEecchHHHHHHHH
Confidence 3566678888876532 1222 4899999999766543
No 150
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=85.70 E-value=0.84 Score=32.17 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=20.1
Q ss_pred ccceeccHHHHHHhhcC-C-CccEEEEec
Q 040163 30 RVPNADRTEVAVELAKH-E-FIQAVVLLH 56 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~-~-~v~A~v~~h 56 (123)
.||+||||.+++.++.. + .+++.+..-
T Consensus 69 lvG~S~Gg~~a~~~a~~~p~~v~~~il~~ 97 (245)
T TIGR01738 69 WLGWSLGGLVALHIAATHPDRVRALVTVA 97 (245)
T ss_pred EEEEcHHHHHHHHHHHHCHHhhheeeEec
Confidence 48999999999998753 3 477766543
No 151
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=85.53 E-value=1.3 Score=34.06 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHHHHhchhhhcC----CCceeecccccceeccHHHHHHhhcC--CCccEEEEecCC
Q 040163 7 IKDYIQALDPVWAQ----PEKIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLHPS 58 (123)
Q Consensus 7 ~~d~~~~~~~l~~~----~~~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~hps 58 (123)
-+++.+.++.|.+. ++++- .||+|+||.++..++.. ..++.++..-|+
T Consensus 93 ~~~la~~l~~L~~~~g~~~~~i~----lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 93 GAELAKFLDFLVDNTGLSLENVH----LIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHHHHHHHHhcCCChHHEE----EEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 35666777777653 12333 48999999999988763 467777776655
No 152
>PRK07868 acyl-CoA synthetase; Validated
Probab=85.29 E-value=1.2 Score=40.16 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=18.7
Q ss_pred ccceeccHHHHHHhhc-C-C-CccEEEE
Q 040163 30 RVPNADRTEVAVELAK-H-E-FIQAVVL 54 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~-~-~-~v~A~v~ 54 (123)
.|||||||.+++.+++ . + .|+..+.
T Consensus 145 lvG~s~GG~~a~~~aa~~~~~~v~~lvl 172 (994)
T PRK07868 145 LVGYSQGGMFCYQAAAYRRSKDIASIVT 172 (994)
T ss_pred EEEEChhHHHHHHHHHhcCCCccceEEE
Confidence 3899999999988764 3 3 5776654
No 153
>PRK06489 hypothetical protein; Provisional
Probab=84.09 E-value=0.73 Score=36.36 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=19.7
Q ss_pred ccceeccHHHHHHhhcC--CCccEEEEe
Q 040163 30 RVPNADRTEVAVELAKH--EFIQAVVLL 55 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~--~~v~A~v~~ 55 (123)
.||+||||.+++.++.. ..|+..+..
T Consensus 158 lvG~SmGG~vAl~~A~~~P~~V~~LVLi 185 (360)
T PRK06489 158 ILGTSMGGMHAWMWGEKYPDFMDALMPM 185 (360)
T ss_pred EEEECHHHHHHHHHHHhCchhhheeeee
Confidence 38999999999998753 357766643
No 154
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=84.00 E-value=0.95 Score=36.04 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=30.6
Q ss_pred chhhhHHHHHHhchhhh-cCCCceeecccccceeccHHHHHHhhc
Q 040163 2 RALTLIKDYIQALDPVW-AQPEKIWISRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 2 ~~~~~~~d~~~~~~~l~-~~~~~~~~~~~~vGfC~GG~~a~~~a~ 45 (123)
.+-++.+|+.+-+.++- +.|..|- .||.+|||.++...|.
T Consensus 125 S~eT~~KD~~~~i~~~fge~~~~ii----lVGHSmGGaIav~~a~ 165 (343)
T KOG2564|consen 125 SLETMSKDFGAVIKELFGELPPQII----LVGHSMGGAIAVHTAA 165 (343)
T ss_pred CHHHHHHHHHHHHHHHhccCCCceE----EEeccccchhhhhhhh
Confidence 35588999999888886 5555543 3899999999977664
No 155
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=83.73 E-value=1.1 Score=35.13 Aligned_cols=44 Identities=27% Similarity=0.187 Sum_probs=28.3
Q ss_pred hhHHHHHHhchhhhcCCCceeecc-c-ccceeccHHHHHHhhcC--CCccEEEEe
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISR-F-RVPNADRTEVAVELAKH--EFIQAVVLL 55 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~-~-~vGfC~GG~~a~~~a~~--~~v~A~v~~ 55 (123)
++.+|+.+.++.+. +.. + .||+||||.+++.++.. ..++..+..
T Consensus 111 ~~~~~~~~~~~~l~-------~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~ 158 (351)
T TIGR01392 111 DDVKAQKLLLDHLG-------IEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVL 158 (351)
T ss_pred HHHHHHHHHHHHcC-------CCCceEEEEECHHHHHHHHHHHHChHhhheEEEE
Confidence 44556666665551 222 2 48999999999998753 356666554
No 156
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=82.95 E-value=1.1 Score=34.36 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=26.9
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC-C-CccEEEE
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH-E-FIQAVVL 54 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~-~-~v~A~v~ 54 (123)
++.+|+...++.+.. +++. .||+||||.+++.++.. + .++..+.
T Consensus 80 ~~~~dl~~l~~~l~~--~~~~----lvG~S~GG~ia~~~a~~~p~~v~~lvl 125 (306)
T TIGR01249 80 DLVADIEKLREKLGI--KNWL----VFGGSWGSTLALAYAQTHPEVVTGLVL 125 (306)
T ss_pred HHHHHHHHHHHHcCC--CCEE----EEEECHHHHHHHHHHHHChHhhhhhee
Confidence 355666655555521 2332 38999999999998753 2 4554444
No 157
>COG3150 Predicted esterase [General function prediction only]
Probab=82.25 E-value=4.9 Score=29.72 Aligned_cols=97 Identities=20% Similarity=0.146 Sum_probs=54.7
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcCCCccEEEEecCCCC-----------------------C
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKHEFIQAVVLLHPSFV-----------------------T 61 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~~~v~A~v~~hps~~-----------------------~ 61 (123)
+.++.+.+++.-+..+ ..++ ||-++||-+|-.++..-.+++++. .|..- +
T Consensus 44 ~a~~ele~~i~~~~~~--~p~i----vGssLGGY~At~l~~~~Girav~~-NPav~P~e~l~gylg~~en~ytg~~y~le 116 (191)
T COG3150 44 QALKELEKAVQELGDE--SPLI----VGSSLGGYYATWLGFLCGIRAVVF-NPAVRPYELLTGYLGRPENPYTGQEYVLE 116 (191)
T ss_pred HHHHHHHHHHHHcCCC--CceE----EeecchHHHHHHHHHHhCChhhhc-CCCcCchhhhhhhcCCCCCCCCcceEEee
Confidence 3455666666655433 2444 666999999999887655555443 23210 0
Q ss_pred --------ccccccCCCc-EEEEecCC-CCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 62 --------VDDIEAVEVP-IAVLRAEF-DQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 62 --------~~d~~~I~~P-vl~~~g~~-D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
..+++.++.| .+++.... |.+.+.. +..+.+. ++...|..|..|+|-
T Consensus 117 ~~hI~~l~~~~~~~l~~p~~~~lL~qtgDEvLDyr---~a~a~y~-----~~~~~V~dgg~H~F~ 173 (191)
T COG3150 117 SRHIATLCVLQFRELNRPRCLVLLSQTGDEVLDYR---QAVAYYH-----PCYEIVWDGGDHKFK 173 (191)
T ss_pred hhhHHHHHHhhccccCCCcEEEeecccccHHHHHH---HHHHHhh-----hhhheeecCCCcccc
Confidence 0234556666 44444444 7554433 2333332 455677889999994
No 158
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=79.74 E-value=2.2 Score=34.11 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=30.2
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC--CCccEEEEecC
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLHP 57 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~hp 57 (123)
++.+|+.+.++.|.-. +. -..||+||||.+++.++.. ..|+..+..-+
T Consensus 131 ~~~~~~~~~l~~l~~~--~~---~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 180 (379)
T PRK00175 131 DWVRAQARLLDALGIT--RL---AAVVGGSMGGMQALEWAIDYPDRVRSALVIAS 180 (379)
T ss_pred HHHHHHHHHHHHhCCC--Cc---eEEEEECHHHHHHHHHHHhChHhhhEEEEECC
Confidence 3455666666665222 11 0148999999999998763 35777666543
No 159
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=79.66 E-value=3.3 Score=31.50 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=20.5
Q ss_pred ccceeccHHHHHHhhcC--CCccEEEEecC
Q 040163 30 RVPNADRTEVAVELAKH--EFIQAVVLLHP 57 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~--~~v~A~v~~hp 57 (123)
.||+||||.++..++.. ..|+..+..-+
T Consensus 91 lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~ 120 (273)
T PLN02211 91 LVGHSAGGLSVTQAIHRFPKKICLAVYVAA 120 (273)
T ss_pred EEEECchHHHHHHHHHhChhheeEEEEecc
Confidence 48999999999888753 35776666533
No 160
>PRK03204 haloalkane dehalogenase; Provisional
Probab=79.62 E-value=3.3 Score=31.53 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=19.5
Q ss_pred cceeccHHHHHHhhcC--CCccEEEEe
Q 040163 31 VPNADRTEVAVELAKH--EFIQAVVLL 55 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--~~v~A~v~~ 55 (123)
||++|||.++++++.. ..++..+..
T Consensus 106 vG~S~Gg~va~~~a~~~p~~v~~lvl~ 132 (286)
T PRK03204 106 MGQDWGGPISMAVAVERADRVRGVVLG 132 (286)
T ss_pred EEECccHHHHHHHHHhChhheeEEEEE
Confidence 7999999999998753 467776654
No 161
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=79.39 E-value=2.4 Score=29.25 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=40.5
Q ss_pred hhHHHHHHhchhhhcC-C-CceeecccccceeccHHHHHHhhcC------CCccEEEEecCCCCCcc------ccccCCC
Q 040163 5 TLIKDYIQALDPVWAQ-P-EKIWISRFRVPNADRTEVAVELAKH------EFIQAVVLLHPSFVTVD------DIEAVEV 70 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~-~-~~~~~~~~~vGfC~GG~~a~~~a~~------~~v~A~v~~hps~~~~~------d~~~I~~ 70 (123)
.+.+.+...+.....+ | .++-+ +|+|+||.+|..++.. .....++++=|..+... .......
T Consensus 9 ~~~~~i~~~~~~~~~~~p~~~i~v----~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~ 84 (153)
T cd00741 9 SLANLVLPLLKSALAQYPDYKIHV----TGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGNAAFAEDRLDPSDAL 84 (153)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEE----EEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCcccchHHHHHhhhccCCc
Confidence 3444555555554431 3 34444 7889999999887642 12233333322222211 2334456
Q ss_pred cEEEEecCCCCCCC
Q 040163 71 PIAVLRAEFDQISP 84 (123)
Q Consensus 71 Pvl~~~g~~D~~~p 84 (123)
.+.-++...|.+-.
T Consensus 85 ~~~~i~~~~D~v~~ 98 (153)
T cd00741 85 FVDRIVNDNDIVPR 98 (153)
T ss_pred cEEEEEECCCccCC
Confidence 67777888885543
No 162
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=79.11 E-value=2.9 Score=33.09 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=29.5
Q ss_pred hHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc--C-CCccEEEEecCC
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK--H-EFIQAVVLLHPS 58 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~--~-~~v~A~v~~hps 58 (123)
+.+|+.+.++.+.. +++- .||+||||.+++.++. . ..|+..+..-|.
T Consensus 141 ~a~~l~~~l~~l~~--~~~~----lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~ 190 (360)
T PLN02679 141 WAELILDFLEEVVQ--KPTV----LIGNSVGSLACVIAASESTRDLVRGLVLLNCA 190 (360)
T ss_pred HHHHHHHHHHHhcC--CCeE----EEEECHHHHHHHHHHHhcChhhcCEEEEECCc
Confidence 34555555555522 1332 3899999999988764 2 368877766543
No 163
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=78.61 E-value=2.9 Score=32.51 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=37.5
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCC
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKF 111 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~ 111 (123)
.+++..|+.+....||+.+|+..++.+.+.-.. .+.+...++..
T Consensus 212 yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y~n---Apl~~~~~~~~ 255 (281)
T COG4757 212 YAAVRTPITFSRALDDPWAPPASRDAFASFYRN---APLEMRDLPRA 255 (281)
T ss_pred HHHhcCceeeeccCCCCcCCHHHHHHHHHhhhc---CcccceecCcc
Confidence 577899999999999999999999999988764 47777777654
No 164
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=78.38 E-value=3.3 Score=32.32 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=34.2
Q ss_pred hHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC--CCccEEEEecCCC
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLHPSF 59 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~hps~ 59 (123)
.+.|+.+.++..... .-+...|.+|.||||-++++.+.+ +.+++.+-.=|.+
T Consensus 89 ~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~ 142 (298)
T COG2267 89 YVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPAL 142 (298)
T ss_pred HHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccc
Confidence 455555556655442 112344568999999999998753 4788888776653
No 165
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=78.18 E-value=3.4 Score=34.04 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.8
Q ss_pred ccccCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 040163 64 DIEAVEVPIAVLRAEFDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 64 d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~ 97 (123)
++.+|++|+.+.+|++|-+..++++..+...+..
T Consensus 327 ~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~ 360 (403)
T KOG2624|consen 327 DLTNIKVPTALYYGDNDWLADPEDVLILLLVLPN 360 (403)
T ss_pred CccccccCEEEEecCCcccCCHHHHHHHHHhccc
Confidence 5788999999999999999999999988888775
No 166
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=77.90 E-value=2 Score=33.72 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=26.3
Q ss_pred hhHHHHHHhchhhhcC--------------------CCceeecccccceeccHHHHHHhh
Q 040163 5 TLIKDYIQALDPVWAQ--------------------PEKIWISRFRVPNADRTEVAVELA 44 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~--------------------~~~~~~~~~~vGfC~GG~~a~~~a 44 (123)
++++|+.+.++.++.. |. +..-|.+|+||||.++++.+
T Consensus 103 ~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~l~GhSmGg~i~~~~~ 160 (332)
T TIGR01607 103 DLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKEN--RLPMYIIGLSMGGNIALRLL 160 (332)
T ss_pred HHHHHHHHHHHHhhhhhccccccccccccccccccccC--CCceeEeeccCccHHHHHHH
Confidence 4567888888776541 21 22346689999999998865
No 167
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.77 E-value=1.8 Score=33.50 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=23.1
Q ss_pred hHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH 46 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~ 46 (123)
+.+.+.+++--+ ||+. .-..+|||+||.+|+..|.+
T Consensus 50 ~a~~yv~~Ir~~--QP~G---Py~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 50 MAAAYVAAIRRV--QPEG---PYVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred HHHHHHHHHHHh--CCCC---CEEEEeeccccHHHHHHHHH
Confidence 444555555444 6652 11237999999999998863
No 168
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=77.42 E-value=5.5 Score=33.34 Aligned_cols=54 Identities=9% Similarity=-0.084 Sum_probs=40.6
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCC-------CeEEEEeCCCCeeeccC
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEV-------DGYVKIFLKFSHGWTVR 118 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~-------~~~~~vYpG~~HGF~~r 118 (123)
+++--..+|+.||..|++||+.......+.+.++.+. =+.+..-||+.|...-.
T Consensus 349 F~~~GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~ 409 (474)
T PF07519_consen 349 FRARGGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGP 409 (474)
T ss_pred HHhcCCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCC
Confidence 4445588999999999999999777777666664332 24777789999998544
No 169
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=77.16 E-value=4.6 Score=32.30 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=39.3
Q ss_pred ccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 66 EAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 66 ~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
..-..|++++.|..+..+|.+...++++.+.. ++++..+.++|.-
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~-----~e~~~ld~aGHwV 294 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPN-----VEVHELDEAGHWV 294 (315)
T ss_pred cccccceeEEecCCCCCcChhHHHHHHHhccc-----hheeecccCCcee
Confidence 55679999999999999999988888888763 7999999999975
No 170
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=74.93 E-value=1.6 Score=32.91 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=37.9
Q ss_pred HHhchhhhcCCCceeecccccceeccHHHHHHhhcC------CCccEEEEecC-CC----CCccccccCCCcEEEEecCC
Q 040163 11 IQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH------EFIQAVVLLHP-SF----VTVDDIEAVEVPIAVLRAEF 79 (123)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~------~~v~A~v~~hp-s~----~~~~d~~~I~~Pvl~~~g~~ 79 (123)
..|++|++..-.+..-.-...|+|.||.+|...+.. +.|..++++-+ ++ +..+.+.+++.++.-...+.
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~~~~~~~~~~~~~~~kI~~~vp~~ 148 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFSEEFLESPGYQRIKDKIHNYVPQS 148 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCChhhcccHhHHHHhhhhEEEcCCc
Confidence 455566654322222122236999999999887643 36778887653 32 22234445555554444444
Q ss_pred C
Q 040163 80 D 80 (123)
Q Consensus 80 D 80 (123)
|
T Consensus 149 s 149 (224)
T PF11187_consen 149 S 149 (224)
T ss_pred c
Confidence 3
No 171
>PRK10349 carboxylesterase BioH; Provisional
Probab=74.78 E-value=4 Score=29.97 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=19.0
Q ss_pred cceeccHHHHHHhhcC--CCccEEEEe
Q 040163 31 VPNADRTEVAVELAKH--EFIQAVVLL 55 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--~~v~A~v~~ 55 (123)
||+||||.+++.+|.. ..++..+..
T Consensus 79 vGhS~Gg~ia~~~a~~~p~~v~~lili 105 (256)
T PRK10349 79 LGWSLGGLVASQIALTHPERVQALVTV 105 (256)
T ss_pred EEECHHHHHHHHHHHhChHhhheEEEe
Confidence 8999999999998753 356665543
No 172
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=74.47 E-value=11 Score=29.90 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=12.8
Q ss_pred cceeccHHHHHHhhc
Q 040163 31 VPNADRTEVAVELAK 45 (123)
Q Consensus 31 vGfC~GG~~a~~~a~ 45 (123)
-|||||-+-|+.++.
T Consensus 9 ~GFC~GV~rAi~~a~ 23 (298)
T PRK01045 9 RGFCAGVDRAIEIVE 23 (298)
T ss_pred CCCCccHHHHHHHHH
Confidence 588999999988774
No 173
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=72.72 E-value=3.4 Score=30.62 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=20.0
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHH
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVA 40 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a 40 (123)
.+.+++...+........+|.. ||+|+||-++
T Consensus 61 rL~~eI~~~~~~~~~~~~~Isf----IgHSLGGli~ 92 (217)
T PF05057_consen 61 RLAEEILEHIKDYESKIRKISF----IGHSLGGLIA 92 (217)
T ss_pred HHHHHHHHhccccccccccceE----EEecccHHHH
Confidence 4555666655555444334444 8999999885
No 174
>PRK07581 hypothetical protein; Validated
Probab=71.63 E-value=3.4 Score=32.00 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=19.1
Q ss_pred ccceeccHHHHHHhhcC-C-CccEEEEe
Q 040163 30 RVPNADRTEVAVELAKH-E-FIQAVVLL 55 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~-~-~v~A~v~~ 55 (123)
.||.||||.+++.+|.. | .|+..+..
T Consensus 128 lvG~S~GG~va~~~a~~~P~~V~~Lvli 155 (339)
T PRK07581 128 VVGWSMGAQQTYHWAVRYPDMVERAAPI 155 (339)
T ss_pred EEEeCHHHHHHHHHHHHCHHHHhhheee
Confidence 38999999999999864 3 46554443
No 175
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=70.62 E-value=6.1 Score=31.69 Aligned_cols=46 Identities=28% Similarity=0.253 Sum_probs=35.8
Q ss_pred hhhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc--CCCccEEEEe
Q 040163 4 LTLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK--HEFIQAVVLL 55 (123)
Q Consensus 4 ~~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~--~~~v~A~v~~ 55 (123)
..+.+|+.+-+++|- -+|+-+ ||+-||+.+++.++- .+.|++.|+.
T Consensus 97 ~~l~~di~~lld~Lg--~~k~~l----vgHDwGaivaw~la~~~Perv~~lv~~ 144 (322)
T KOG4178|consen 97 DELVGDIVALLDHLG--LKKAFL----VGHDWGAIVAWRLALFYPERVDGLVTL 144 (322)
T ss_pred HHHHHHHHHHHHHhc--cceeEE----EeccchhHHHHHHHHhChhhcceEEEe
Confidence 467889999999995 224444 899999999999974 4578888775
No 176
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=69.82 E-value=5.7 Score=33.39 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=20.4
Q ss_pred ccceeccHHHHHHhhcC--CCccEEEEec
Q 040163 30 RVPNADRTEVAVELAKH--EFIQAVVLLH 56 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~--~~v~A~v~~h 56 (123)
.||+||||.+++.++.. +.|+..+..-
T Consensus 278 LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~ 306 (481)
T PLN03087 278 IVAHSLGCILALALAVKHPGAVKSLTLLA 306 (481)
T ss_pred EEEECHHHHHHHHHHHhChHhccEEEEEC
Confidence 38999999999998753 3577666654
No 177
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.75 E-value=8.7 Score=30.21 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=38.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCC
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRY 119 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~ 119 (123)
..-+=+.+|.+|.++|.+-.+.+++.+.+ ++.++-+ ...+|+|-.+.
T Consensus 242 ~d~l~Fyygt~DgW~p~~~~d~~kdd~~e---ed~~Lde-dki~HAFV~~~ 288 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVPSHYYDYYKDDVPE---EDLKLDE-DKIPHAFVVKH 288 (301)
T ss_pred CcEEEEEccCCCCCcchHHHHHHhhhcch---hceeecc-ccCCcceeecc
Confidence 46788999999999998888888888765 3667766 78999997654
No 178
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=67.46 E-value=4.1 Score=33.09 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=19.5
Q ss_pred ccceeccHHHHHHhhcC--CCccEEEEe
Q 040163 30 RVPNADRTEVAVELAKH--EFIQAVVLL 55 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~--~~v~A~v~~ 55 (123)
.||.||||..++.++.. ..|+..+..
T Consensus 165 vvG~SmGG~ial~~a~~~P~~v~~lv~i 192 (389)
T PRK06765 165 VMGPSMGGMQAQEWAVHYPHMVERMIGV 192 (389)
T ss_pred EEEECHHHHHHHHHHHHChHhhheEEEE
Confidence 37999999999998763 356665554
No 179
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=67.04 E-value=9.5 Score=31.84 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=21.2
Q ss_pred ccceeccHHHHHHhhcC--CCccEEEEecCC
Q 040163 30 RVPNADRTEVAVELAKH--EFIQAVVLLHPS 58 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~--~~v~A~v~~hps 58 (123)
.|||||||.+|..++.. ..|..++..=|+
T Consensus 123 LIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 123 LLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred EEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 38999999999998763 356666665543
No 180
>PF14851 FAM176: FAM176 family
Probab=64.26 E-value=2.2 Score=30.64 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=28.0
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHH
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVE 42 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~ 42 (123)
.|+++.++|..|.++.|++.+. -|+.|-|+|=-+++-
T Consensus 3 ~llSnsLaaya~I~~~PE~~aL-YFv~gVC~GLlLtLc 39 (153)
T PF14851_consen 3 ELLSNSLAAYAHIRDNPERFAL-YFVSGVCAGLLLTLC 39 (153)
T ss_pred hHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHH
Confidence 5899999999999999998763 334577997444433
No 181
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=64.06 E-value=7.3 Score=25.94 Aligned_cols=15 Identities=13% Similarity=-0.090 Sum_probs=12.7
Q ss_pred cceeccHHHHHHhhc
Q 040163 31 VPNADRTEVAVELAK 45 (123)
Q Consensus 31 vGfC~GG~~a~~~a~ 45 (123)
.|+|+||.+|..++.
T Consensus 69 tGHSLGGalA~l~a~ 83 (140)
T PF01764_consen 69 TGHSLGGALASLAAA 83 (140)
T ss_dssp EEETHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHH
Confidence 789999999987764
No 182
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.80 E-value=16 Score=29.67 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=43.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCCCC
Q 040163 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRYNV 121 (123)
Q Consensus 68 I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~~~ 121 (123)
.-.+.+.+++..|.++|.++++++.+..++ .|..+.-.-+..+.|-=..|.++
T Consensus 224 ~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~-~g~~v~s~~~~ds~H~~h~r~~p 276 (350)
T KOG2521|consen 224 LPWNQLYLYSDNDDVLPADEIEKFIALRRE-KGVNVKSVKFKDSEHVAHFRSFP 276 (350)
T ss_pred ccccceeecCCccccccHHHHHHHHHHHHh-cCceEEEeeccCccceeeeccCc
Confidence 468889999999999999999999888888 47777777788888876666554
No 183
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=61.78 E-value=7.5 Score=32.08 Aligned_cols=14 Identities=0% Similarity=-0.061 Sum_probs=11.2
Q ss_pred ccceeccHHHHHHh
Q 040163 30 RVPNADRTEVAVEL 43 (123)
Q Consensus 30 ~vGfC~GG~~a~~~ 43 (123)
.+|||+||..++.+
T Consensus 172 l~GvCqgG~~~laa 185 (406)
T TIGR01849 172 VIAVCQPAVPVLAA 185 (406)
T ss_pred EEEEchhhHHHHHH
Confidence 38999999996654
No 184
>PLN03037 lipase class 3 family protein; Provisional
Probab=60.90 E-value=7.5 Score=33.19 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=24.8
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~ 45 (123)
++++++...++..+..++.. ...+.|+|+||.+|.+.|.
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~--SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEV--SLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHHHHhccccCCcc--eEEEeccCHHHHHHHHHHH
Confidence 45666666666555433322 2234799999999988763
No 185
>PLN02571 triacylglycerol lipase
Probab=57.70 E-value=10 Score=31.47 Aligned_cols=17 Identities=12% Similarity=-0.177 Sum_probs=13.9
Q ss_pred cccceeccHHHHHHhhc
Q 040163 29 FRVPNADRTEVAVELAK 45 (123)
Q Consensus 29 ~~vGfC~GG~~a~~~a~ 45 (123)
+++|+|+||.+|.+.|.
T Consensus 229 ~VTGHSLGGALAtLaA~ 245 (413)
T PLN02571 229 TICGHSLGAALATLNAV 245 (413)
T ss_pred EEeccchHHHHHHHHHH
Confidence 45799999999988663
No 186
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=55.64 E-value=13 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=21.3
Q ss_pred hHHHHHHhchhhhc-CCC-ceeecccccceeccHHHHHHhhc
Q 040163 6 LIKDYIQALDPVWA-QPE-KIWISRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 6 ~~~d~~~~~~~l~~-~~~-~~~~~~~~vGfC~GG~~a~~~a~ 45 (123)
+.+++...+..++. .|. ++ +.+|+|+||.+|..++.
T Consensus 110 ~~~~~~~~~~~~~~~~p~~~i----~vtGHSLGGaiA~l~a~ 147 (229)
T cd00519 110 LYNQVLPELKSALKQYPDYKI----IVTGHSLGGALASLLAL 147 (229)
T ss_pred HHHHHHHHHHHHHhhCCCceE----EEEccCHHHHHHHHHHH
Confidence 44445555444433 232 33 23799999999988664
No 187
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=55.52 E-value=1.1e+02 Score=25.36 Aligned_cols=105 Identities=10% Similarity=0.010 Sum_probs=56.1
Q ss_pred HHHHHhchhhhcCCC------ceeecccccceeccHHHHHHhhcCCCcc-EEEEecCC--C--------CC----ccccc
Q 040163 8 KDYIQALDPVWAQPE------KIWISRFRVPNADRTEVAVELAKHEFIQ-AVVLLHPS--F--------VT----VDDIE 66 (123)
Q Consensus 8 ~d~~~~~~~l~~~~~------~~~~~~~~vGfC~GG~~a~~~a~~~~v~-A~v~~hps--~--------~~----~~d~~ 66 (123)
+++..+++|+++++. ++-|+|..=|+...-+++..+ .. ..+ .++.+... . -. .+.+.
T Consensus 22 ~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~-GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~ 99 (398)
T PRK13656 22 ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GA-GADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAK 99 (398)
T ss_pred HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-Hc-CCeEEEEecCcchhhhcccccccchHHHHHHHHH
Confidence 577889999998853 233444432344433455555 32 222 22222111 0 01 12233
Q ss_pred cCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccCCCC
Q 040163 67 AVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVRYNV 121 (123)
Q Consensus 67 ~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r~~~ 121 (123)
.....+..+.++ ....++++++.+.+++..| ..++.++ ..||..|.++
T Consensus 100 ~~G~~a~~i~~D---Vss~E~v~~lie~I~e~~G-~IDiLVn---SaA~~~r~~p 147 (398)
T PRK13656 100 AAGLYAKSINGD---AFSDEIKQKVIELIKQDLG-QVDLVVY---SLASPRRTDP 147 (398)
T ss_pred hcCCceEEEEcC---CCCHHHHHHHHHHHHHhcC-CCCEEEE---CCccCCCCCc
Confidence 333455556553 3477888888888877543 4677777 3557777664
No 188
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=55.19 E-value=15 Score=32.29 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=38.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeec
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWT 116 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~ 116 (123)
--|+-++...-|++.+ +.-.+...|+. .|.+..+.+-++.+|||-
T Consensus 787 LPp~~i~ac~mDP~LD--D~vmfA~kLr~-lG~~v~l~vle~lPHGFL 831 (880)
T KOG4388|consen 787 LPPVHIVACAMDPMLD--DSVMFARKLRN-LGQPVTLRVLEDLPHGFL 831 (880)
T ss_pred CCCceEEEeccCcchh--HHHHHHHHHHh-cCCceeehhhhcCCccce
Confidence 3678888899997754 66788999998 688999999999999994
No 189
>PLN02310 triacylglycerol lipase
Probab=55.07 E-value=12 Score=30.91 Aligned_cols=15 Identities=13% Similarity=-0.104 Sum_probs=12.9
Q ss_pred ccceeccHHHHHHhh
Q 040163 30 RVPNADRTEVAVELA 44 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a 44 (123)
++|+|+||.+|.+.|
T Consensus 213 vTGHSLGGALAtLaA 227 (405)
T PLN02310 213 VTGHSLGGALALLNA 227 (405)
T ss_pred EEcccHHHHHHHHHH
Confidence 379999999998876
No 190
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=54.62 E-value=39 Score=29.40 Aligned_cols=15 Identities=20% Similarity=-0.062 Sum_probs=12.6
Q ss_pred cceeccHHHHHHhhc
Q 040163 31 VPNADRTEVAVELAK 45 (123)
Q Consensus 31 vGfC~GG~~a~~~a~ 45 (123)
-|||||-+-|+.++.
T Consensus 9 ~GfC~GV~rAi~~~~ 23 (647)
T PRK00087 9 AGFCFGVKRAVDTAI 23 (647)
T ss_pred CCcCccHHHHHHHHH
Confidence 488999999988774
No 191
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=53.53 E-value=43 Score=27.78 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=31.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEe
Q 040163 72 IAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIF 108 (123)
Q Consensus 72 vl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vY 108 (123)
.+..|+..|+..|.++-.++.+.+++ .|-+.+++..
T Consensus 296 yvsYHs~~D~~~p~~~K~~l~~~l~~-lgfda~l~lI 331 (403)
T PF11144_consen 296 YVSYHSIKDDLAPAEDKEELYEILKN-LGFDATLHLI 331 (403)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHH-cCCCeEEEEe
Confidence 67789999999999999999999998 5777777665
No 192
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=53.51 E-value=16 Score=27.37 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=16.8
Q ss_pred cceeccHHHHHHhhcC-----CCccEEEE
Q 040163 31 VPNADRTEVAVELAKH-----EFIQAVVL 54 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~-----~~v~A~v~ 54 (123)
||+||||-++-.+... ..|+..++
T Consensus 90 VgHSmGGlvar~~l~~~~~~~~~v~~iit 118 (225)
T PF07819_consen 90 VGHSMGGLVARSALSLPNYDPDSVKTIIT 118 (225)
T ss_pred EEEchhhHHHHHHHhccccccccEEEEEE
Confidence 8999999987665432 24666666
No 193
>PLN02454 triacylglycerol lipase
Probab=53.38 E-value=11 Score=31.36 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=24.5
Q ss_pred hhHHHHHHhchhhhcC-C-CceeecccccceeccHHHHHHhhc
Q 040163 5 TLIKDYIQALDPVWAQ-P-EKIWISRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~-~-~~~~~~~~~vGfC~GG~~a~~~a~ 45 (123)
++-+++.+.+.-+.++ | +++ ..+++|+|+||.+|.+.|.
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~--sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKL--SIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc--eEEEEecCHHHHHHHHHHH
Confidence 3455666666666543 2 232 2234799999999988763
No 194
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=53.32 E-value=76 Score=23.09 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=31.6
Q ss_pred cceeccHHHHHHhhcC--CCccEEE-EecCCCCCccccccCC---CcEEEEecCCCCC
Q 040163 31 VPNADRTEVAVELAKH--EFIQAVV-LLHPSFVTVDDIEAVE---VPIAVLRAEFDQI 82 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--~~v~A~v-~~hps~~~~~d~~~I~---~Pvl~~~g~~D~~ 82 (123)
+|+|+|...+-..+.. ..++-++ ..=|..- ......+. ..+....+.+|++
T Consensus 114 ~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~g-~~~a~~l~~~~~~v~a~~a~~D~I 170 (177)
T PF06259_consen 114 VGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGMG-VDSASDLGVPPGHVYAMTAPGDPI 170 (177)
T ss_pred EEecchhHHHHHHhhhCCCCcccEEEECCCCCC-CCCHHHcCCCCCcEEEeeCCCCCc
Confidence 8999999998776654 3455443 3334432 22333333 4488888998865
No 195
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=52.86 E-value=12 Score=31.15 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=63.5
Q ss_pred ceeeccccc-ceeccHHHHHHhh-cCCCccEEEEe-----------------cCC-CC-C--c-----------------
Q 040163 23 KIWISRFRV-PNADRTEVAVELA-KHEFIQAVVLL-----------------HPS-FV-T--V----------------- 62 (123)
Q Consensus 23 ~~~~~~~~v-GfC~GG~~a~~~a-~~~~v~A~v~~-----------------hps-~~-~--~----------------- 62 (123)
+.-+.+|.| |-|=-|+-+++.| +.+.|.|++.+ |++ +. . +
T Consensus 230 q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi~erl~tp~fkq 309 (507)
T COG4287 230 QVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGIDERLETPLFKQ 309 (507)
T ss_pred heeeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchhHhhhHHHhhcCHHHHH
Confidence 466788855 8898899998876 56778777763 221 10 0 0
Q ss_pred ----cc---------cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 63 ----DD---------IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 63 ----~d---------~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.| ..++..|=.++.++.|..++++...-..+.|.. ...+..-|+..|--
T Consensus 310 L~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG----~kaLrmvPN~~H~~ 371 (507)
T COG4287 310 LLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPG----EKALRMVPNDPHNL 371 (507)
T ss_pred HHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCC----ceeeeeCCCCcchh
Confidence 00 156788989999999999999988888888864 34677788888854
No 196
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=52.70 E-value=10 Score=32.60 Aligned_cols=44 Identities=11% Similarity=0.019 Sum_probs=35.3
Q ss_pred HHHHHHhchhhhcCCC---ceeecccccceeccHHHHHHhhcC--CCccEEEE
Q 040163 7 IKDYIQALDPVWAQPE---KIWISRFRVPNADRTEVAVELAKH--EFIQAVVL 54 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~---~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~ 54 (123)
++|..-.|+++..||- ++++ .|.||+|.-.+.+|+. |.+||++.
T Consensus 106 ~~Dg~D~I~Wia~QpWsNG~Vgm----~G~SY~g~tq~~~Aa~~pPaLkai~p 154 (563)
T COG2936 106 AEDGYDTIEWLAKQPWSNGNVGM----LGLSYLGFTQLAAAALQPPALKAIAP 154 (563)
T ss_pred ccchhHHHHHHHhCCccCCeeee----ecccHHHHHHHHHHhcCCchheeecc
Confidence 5788889999999993 7777 5569999999888763 56788776
No 197
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=49.06 E-value=18 Score=30.26 Aligned_cols=40 Identities=20% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.--+|+++|++|++.... ....+ +..+..+.+-||.+||=
T Consensus 351 ~~rmlFVYG~nDPW~A~~-----f~l~~--g~~ds~v~~~PggnHga 390 (448)
T PF05576_consen 351 GPRMLFVYGENDPWSAEP-----FRLGK--GKRDSYVFTAPGGNHGA 390 (448)
T ss_pred CCeEEEEeCCCCCcccCc-----cccCC--CCcceEEEEcCCCcccc
Confidence 355999999999886422 11111 23566777779999993
No 198
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=48.68 E-value=24 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=19.8
Q ss_pred ccceeccHHHHHHhhc-CCCccEEEEecCCCC
Q 040163 30 RVPNADRTEVAVELAK-HEFIQAVVLLHPSFV 60 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~-~~~v~A~v~~hps~~ 60 (123)
.||.|.||+.++.+|+ .|..-+....-++.+
T Consensus 144 liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPl 175 (581)
T PF11339_consen 144 LIGNCQGGWAAMMLAALRPDLVGPLVLAGAPL 175 (581)
T ss_pred EEeccHHHHHHHHHHhcCcCccCceeecCCCc
Confidence 4899999999988876 444333333334444
No 199
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.27 E-value=7.9 Score=28.93 Aligned_cols=43 Identities=14% Similarity=0.399 Sum_probs=36.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 70 VPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 70 ~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.-+++.+|.+|++.|. .++++++|.+| .+|..+.++.|+.|-|
T Consensus 174 ~~~vfc~G~e~~~L~~--~~~L~~~l~dK-qipaw~~~WggvaHdw 216 (227)
T COG4947 174 IDMVFCIGDEDPFLDN--NQHLSRLLSDK-QIPAWMHVWGGVAHDW 216 (227)
T ss_pred ccEEEEecCccccccc--hHHHHHHhccc-cccHHHHHhccccccc
Confidence 4578889999988874 46899999984 7899999999999976
No 200
>PLN02408 phospholipase A1
Probab=47.83 E-value=19 Score=29.42 Aligned_cols=16 Identities=13% Similarity=-0.116 Sum_probs=13.4
Q ss_pred ccceeccHHHHHHhhc
Q 040163 30 RVPNADRTEVAVELAK 45 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~ 45 (123)
+.|.|+||.+|.+.|.
T Consensus 204 vTGHSLGGALAtLaA~ 219 (365)
T PLN02408 204 ITGHSLGAALATLTAY 219 (365)
T ss_pred EeccchHHHHHHHHHH
Confidence 3799999999988764
No 201
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=47.69 E-value=28 Score=28.21 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=31.2
Q ss_pred hhHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC--CCccEEEEecCC
Q 040163 5 TLIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH--EFIQAVVLLHPS 58 (123)
Q Consensus 5 ~~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~--~~v~A~v~~hps 58 (123)
++.+|+.+.++.+.-. ++- .||.+|||.+++.++.. ..|+..+..-|.
T Consensus 182 ~~a~~l~~~i~~l~~~--~~~----LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~ 231 (383)
T PLN03084 182 EYVSSLESLIDELKSD--KVS----LVVQGYFSPPVVKYASAHPDKIKKLILLNPP 231 (383)
T ss_pred HHHHHHHHHHHHhCCC--Cce----EEEECHHHHHHHHHHHhChHhhcEEEEECCC
Confidence 3456666667666321 222 37889999999998764 357777665544
No 202
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=47.00 E-value=19 Score=32.96 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=21.7
Q ss_pred hHHHHHHhchhhhcCCCceeeccc-ccceeccHHHHHHhhc
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRF-RVPNADRTEVAVELAK 45 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~-~vGfC~GG~~a~~~a~ 45 (123)
+.+|+.+.++.+ +++ ..+ .+||||||.+++++|.
T Consensus 1118 la~~~~~~i~~~--~~~----~p~~l~G~S~Gg~vA~e~A~ 1152 (1296)
T PRK10252 1118 VCEAHLATLLEQ--QPH----GPYHLLGYSLGGTLAQGIAA 1152 (1296)
T ss_pred HHHHHHHHHHhh--CCC----CCEEEEEechhhHHHHHHHH
Confidence 445555555544 222 112 3799999999999875
No 203
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=46.08 E-value=16 Score=29.93 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=17.2
Q ss_pred ceeeccc--ccceeccHHHHHHhhc
Q 040163 23 KIWISRF--RVPNADRTEVAVELAK 45 (123)
Q Consensus 23 ~~~~~~~--~vGfC~GG~~a~~~a~ 45 (123)
+.||.+. +||.||||.-++..+.
T Consensus 142 ~LGI~~l~avvGgSmGGMqaleWa~ 166 (368)
T COG2021 142 ALGIKKLAAVVGGSMGGMQALEWAI 166 (368)
T ss_pred hcCcceEeeeeccChHHHHHHHHHH
Confidence 3455444 4899999999999764
No 204
>PF01691 Adeno_E1B_19K: Adenovirus E1B 19K protein / small t-antigen The Prosite family contains members not in the Pfam family.; InterPro: IPR002924 This family consists of adenovirus E1B 19 kDa protein or small t-antigen. The E1B 19 kDa protein inhibits E1A induced apoptosis and hence prolongs the viability of the host cell []. It can also inhibit apoptosis mediated by tumour necrosis factor alpha and Fas antigen []. E1B 19 kDa blocks apoptosis by interacting with and inhibiting the p53-inducible and death-promoting Bax protein []. The E1B region of adenovirus encodes two proteins E1B 19 kDa the small t-antigen as found in this family and E1B 55 kDa the large t-antigen which is not found in this family; both of these proteins inhibit E1A induced apoptosis [].; GO: 0005521 lamin binding, 0006916 anti-apoptosis
Probab=45.58 E-value=20 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.4
Q ss_pred CchhhhHHHHHHhchhhhcCCCcee-ecccccceeccHHHH
Q 040163 1 MRALTLIKDYIQALDPVWAQPEKIW-ISRFRVPNADRTEVA 40 (123)
Q Consensus 1 ~~~~~~~~d~~~~~~~l~~~~~~~~-~~~~~vGfC~GG~~a 40 (123)
|.-++.++|+.....-+....++.+ ..++ ||||.++
T Consensus 1 Mdll~~l~~~~~~R~ll~~aS~~~s~~~R~----~Fg~~La 37 (134)
T PF01691_consen 1 MDLLKILEDFKSLRRLLEGASNRTSWWWRF----LFGGRLA 37 (134)
T ss_pred CcHHHHHHhHHHHHHHHHhcccCCCcEEEe----ecCchHH
Confidence 6778899999999888876655443 4555 9999875
No 205
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=45.05 E-value=12 Score=29.38 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=12.7
Q ss_pred cceeccHHHHHHhhc
Q 040163 31 VPNADRTEVAVELAK 45 (123)
Q Consensus 31 vGfC~GG~~a~~~a~ 45 (123)
-|||||-+-|+.++.
T Consensus 8 ~GFC~GV~rAi~~a~ 22 (280)
T TIGR00216 8 RGFCFGVKRAIQMAE 22 (280)
T ss_pred CCCCccHHHHHHHHH
Confidence 488999999998774
No 206
>PLN02761 lipase class 3 family protein
Probab=44.87 E-value=21 Score=30.60 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=12.9
Q ss_pred ccceeccHHHHHHhh
Q 040163 30 RVPNADRTEVAVELA 44 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a 44 (123)
++|.|+||.+|.+.|
T Consensus 298 VTGHSLGGALAtLaA 312 (527)
T PLN02761 298 VTGHSLGASLALVSA 312 (527)
T ss_pred EeccchHHHHHHHHH
Confidence 479999999998866
No 207
>PLN02324 triacylglycerol lipase
Probab=43.54 E-value=22 Score=29.49 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=12.9
Q ss_pred cceeccHHHHHHhhc
Q 040163 31 VPNADRTEVAVELAK 45 (123)
Q Consensus 31 vGfC~GG~~a~~~a~ 45 (123)
+|+|+||.+|.+.|.
T Consensus 220 TGHSLGGALAtLaA~ 234 (415)
T PLN02324 220 TGHSLGAVMSVLSAA 234 (415)
T ss_pred ecCcHHHHHHHHHHH
Confidence 799999999988763
No 208
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=43.35 E-value=32 Score=24.76 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=32.3
Q ss_pred cceeccHHHHHHhhcC--------CCccEEEEe-cCCCCCc-ccc-ccCCCcEEEEecCCCCCC
Q 040163 31 VPNADRTEVAVELAKH--------EFIQAVVLL-HPSFVTV-DDI-EAVEVPIAVLRAEFDQIS 83 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--------~~v~A~v~~-hps~~~~-~d~-~~I~~Pvl~~~g~~D~~~ 83 (123)
+|||.|+.++...... ..|.+++.+ .|..... ..+ ....-.++-++-..|+++
T Consensus 86 ~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~~~~~~~~~~~~~~~~~~~C~~gD~vC 149 (179)
T PF01083_consen 86 AGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRRGAGQPGIPGDYSDRVRSYCNPGDPVC 149 (179)
T ss_dssp EEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTTBTTTTTBTCSCGGGEEEE-BTT-GGG
T ss_pred EecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcccCCccccCcccccceeEEcCCCCccc
Confidence 6999999999887543 356676664 5654321 112 223455888888888887
No 209
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=42.56 E-value=14 Score=29.06 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=12.7
Q ss_pred cceeccHHHHHHhhc
Q 040163 31 VPNADRTEVAVELAK 45 (123)
Q Consensus 31 vGfC~GG~~a~~~a~ 45 (123)
-|||||-+-|+.++.
T Consensus 9 ~GFC~GV~rAi~~a~ 23 (281)
T PRK12360 9 AGFCFGVKRAIDTAY 23 (281)
T ss_pred CCCCccHHHHHHHHH
Confidence 588999999988763
No 210
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=42.55 E-value=27 Score=26.22 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=38.5
Q ss_pred cEEEEecCCCCCccccccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCe
Q 040163 50 QAVVLLHPSFVTVDDIEAV-EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 50 ~A~v~~hps~~~~~d~~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~H 113 (123)
+.....++..+. ..+| +++++-+-|+.|.+..+.|.....+....-+...-.-++-||++|
T Consensus 117 ~G~~~~~Gr~Vd---p~aI~~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GH 178 (202)
T PF06850_consen 117 RGTWTVRGRPVD---PAAIRRTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGH 178 (202)
T ss_pred CCceEECCEEcc---hHHcccceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCe
Confidence 344444444343 3444 377888999999999998877666665432222234566788888
No 211
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=41.07 E-value=30 Score=27.47 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=26.6
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~ 97 (123)
+.+=++|+++.+|.+|.++-.|...++.+.++.
T Consensus 208 ln~~~ikvli~ygg~DhLIEeeI~~E~a~~f~~ 240 (297)
T PF06342_consen 208 LNKKPIKVLIAYGGKDHLIEEEISFEFAMKFKG 240 (297)
T ss_pred hccCCCcEEEEEcCcchhhHHHHHHHHHHHhCC
Confidence 344568999999999999998888877776653
No 212
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=40.75 E-value=23 Score=28.98 Aligned_cols=36 Identities=22% Similarity=0.112 Sum_probs=27.7
Q ss_pred hHHHHHHhchhhhc-------CCCceeecccccceeccHHHHHHhhc
Q 040163 6 LIKDYIQALDPVWA-------QPEKIWISRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 6 ~~~d~~~~~~~l~~-------~~~~~~~~~~~vGfC~GG~~a~~~a~ 45 (123)
.+.|.++|+++++. .|++|.+ .|.|-||..+..++.
T Consensus 153 g~~D~~~al~wv~~~i~~fggd~~~v~~----~G~SaG~~~~~~~~~ 195 (493)
T cd00312 153 GLKDQRLALKWVQDNIAAFGGDPDSVTI----FGESAGGASVSLLLL 195 (493)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcceEEE----EeecHHHHHhhhHhh
Confidence 47899999999985 3556666 577999999877653
No 213
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=40.35 E-value=49 Score=26.78 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=31.8
Q ss_pred cceeccHHHHHHh----hcC---CCccEEEEe-cCCCCCccc---c-ccCCCcEEEEecCCCCC
Q 040163 31 VPNADRTEVAVEL----AKH---EFIQAVVLL-HPSFVTVDD---I-EAVEVPIAVLRAEFDQI 82 (123)
Q Consensus 31 vGfC~GG~~a~~~----a~~---~~v~A~v~~-hps~~~~~d---~-~~I~~Pvl~~~g~~D~~ 82 (123)
||||+|+++.+.. +.+ +.|+-++-. =|...+.++ + .-++..+.-.|+++|-+
T Consensus 225 vG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~~~~~W~~~r~vVsGr~vN~YS~~D~v 288 (345)
T PF05277_consen 225 VGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPSDPEEWRKIRSVVSGRLVNVYSENDWV 288 (345)
T ss_pred EeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCCCHHHHHHHHHHccCeEEEEecCcHHH
Confidence 8999999998663 333 234443332 232222222 2 33788999999999943
No 214
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=40.26 E-value=13 Score=29.16 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=35.8
Q ss_pred cceeccHHHHHHhhcC--CCccEEEEecCCCCCc---------------cccccCC-CcEEEEecCCCCCCCHHHHHHHH
Q 040163 31 VPNADRTEVAVELAKH--EFIQAVVLLHPSFVTV---------------DDIEAVE-VPIAVLRAEFDQISPLALLKQFE 92 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--~~v~A~v~~hps~~~~---------------~d~~~I~-~Pvl~~~g~~D~~~p~e~~~~~~ 92 (123)
-|||||-+-|+.++.. ..-..-++.++.++-. ++.+.+. ...+++-+ +.+|++..++++
T Consensus 7 ~GfC~GV~rAi~~a~~~~~~~~~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~~~~~~g~~ViirA---HGv~~~~~~~l~ 83 (281)
T PF02401_consen 7 AGFCFGVKRAIEIAEEALEEYPGPVYTLGPIIHNPQVVERLEKRGVKVVDDIDEVPEGDTVIIRA---HGVPPEVYEELK 83 (281)
T ss_dssp -SS-HHHHHHHHHHHHHCCCHSS-EEECS-SSS-HHHHHHHHHCTEEEESSGCGS-TTEEEEE-T---T---HHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHHHhcCCCEEEecCcccCHHHHHHHHHCCCEEecCccccCCCCEEEEeC---CCCCHHHHHHHH
Confidence 5889999999998753 1221134444443321 3333333 33444443 345666555544
Q ss_pred HH------------------HhhcCCCCeEEEEeCCCCe
Q 040163 93 EV------------------LTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 93 ~~------------------l~~~~~~~~~~~vYpG~~H 113 (123)
+. .++.....+++.++-...|
T Consensus 84 ~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~H 122 (281)
T PF02401_consen 84 ERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNH 122 (281)
T ss_dssp HTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-
T ss_pred HcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCC
Confidence 32 2221234778888877777
No 215
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=37.32 E-value=14 Score=28.15 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=14.6
Q ss_pred cccccceeccHHHHHHhhc
Q 040163 27 SRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 27 ~~~~vGfC~GG~~a~~~a~ 45 (123)
.++.++||.||.-++.-|.
T Consensus 23 ~~~gIdfCcgg~~tLeeA~ 41 (224)
T PRK13276 23 RSVGIDFCCGGQVSIEAAS 41 (224)
T ss_pred HHcCCCcCCCCChhHHHHH
Confidence 4456889999998888554
No 216
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=36.98 E-value=35 Score=28.40 Aligned_cols=16 Identities=0% Similarity=-0.120 Sum_probs=13.2
Q ss_pred ccceeccHHHHHHhhc
Q 040163 30 RVPNADRTEVAVELAK 45 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~ 45 (123)
.||+||||.++..++.
T Consensus 166 LVGHSMGGlva~~fl~ 181 (440)
T PLN02733 166 IISHSMGGLLVKCFMS 181 (440)
T ss_pred EEEECHhHHHHHHHHH
Confidence 3899999999987653
No 217
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=34.85 E-value=64 Score=25.94 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=8.1
Q ss_pred ccCCCcEEEE--ecCCCCC
Q 040163 66 EAVEVPIAVL--RAEFDQI 82 (123)
Q Consensus 66 ~~I~~Pvl~~--~g~~D~~ 82 (123)
.+|+.-+|+. ++..|+.
T Consensus 195 ~ki~g~ili~P~~~~~~~~ 213 (336)
T KOG1515|consen 195 PKIKGQILIYPFFQGTDRT 213 (336)
T ss_pred cceEEEEEEecccCCCCCC
Confidence 4455555553 3444433
No 218
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=34.66 E-value=21 Score=21.48 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCeEEEE
Q 040163 82 ISPLALLKQFEEVLTDKSEVDGYVKI 107 (123)
Q Consensus 82 ~~p~e~~~~~~~~l~~~~~~~~~~~v 107 (123)
++|++....+++.|.+ .+..+++.+
T Consensus 39 ~V~p~~~~~f~~~L~~-~~i~~~v~i 63 (74)
T PF02244_consen 39 MVPPEKLEEFEELLKE-HGIEYEVLI 63 (74)
T ss_dssp EEEGGGHHHHHHHHHH-TT-EEEEEE
T ss_pred EECHHHHHHHHHHHHH-CCCcEEEEe
Confidence 4589999999999998 577887765
No 219
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=33.97 E-value=49 Score=25.51 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=48.5
Q ss_pred ceeccHHHHHHhhc---CCCcc-----EEEEecC--------C--CCCc----------cccccCCCcEEEEecCCCCCC
Q 040163 32 PNADRTEVAVELAK---HEFIQ-----AVVLLHP--------S--FVTV----------DDIEAVEVPIAVLRAEFDQIS 83 (123)
Q Consensus 32 GfC~GG~~a~~~a~---~~~v~-----A~v~~hp--------s--~~~~----------~d~~~I~~Pvl~~~g~~D~~~ 83 (123)
|.|-|+.+++..-. +|.|. ++++.-- . .++. ++...++.|+|+..++.|.--
T Consensus 142 GHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlgLt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espk 221 (270)
T KOG4627|consen 142 GHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLGLTERNAESVSCDLWEYTDVTVWILVVAAEHESPK 221 (270)
T ss_pred ccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccCcccchhhhcCccHHHhcCceeeeeEeeecccCcH
Confidence 78999999988643 34443 3333111 0 1111 456789999999999999533
Q ss_pred CHHHHHHHHHHHhhcCCCCeEEEEeCCCCe
Q 040163 84 PLALLKQFEEVLTDKSEVDGYVKIFLKFSH 113 (123)
Q Consensus 84 p~e~~~~~~~~l~~~~~~~~~~~vYpG~~H 113 (123)
=.||-+.+.+.+.+ ..+..|++..|
T Consensus 222 lieQnrdf~~q~~~-----a~~~~f~n~~h 246 (270)
T KOG4627|consen 222 LIEQNRDFADQLRK-----ASFTLFKNYDH 246 (270)
T ss_pred HHHhhhhHHHHhhh-----cceeecCCcch
Confidence 34555556666554 46777888766
No 220
>PLN02802 triacylglycerol lipase
Probab=33.40 E-value=41 Score=28.74 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=13.3
Q ss_pred ccceeccHHHHHHhhc
Q 040163 30 RVPNADRTEVAVELAK 45 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~ 45 (123)
..|+|+||.+|.+.|.
T Consensus 334 VTGHSLGGALAtLaA~ 349 (509)
T PLN02802 334 VTGHSLGAALALLVAD 349 (509)
T ss_pred EeccchHHHHHHHHHH
Confidence 3799999999988764
No 221
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=32.85 E-value=21 Score=27.89 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=25.8
Q ss_pred HHHHHhchhhhcC-CCceeecccccceeccHHHHHHhhcCC
Q 040163 8 KDYIQALDPVWAQ-PEKIWISRFRVPNADRTEVAVELAKHE 47 (123)
Q Consensus 8 ~d~~~~~~~l~~~-~~~~~~~~~~vGfC~GG~~a~~~a~~~ 47 (123)
.|+-++++.++.. |+. ..+.||.||||.+.-++...+
T Consensus 89 ~D~~aal~~~~~~~~~~---P~y~vgHS~GGqa~gL~~~~~ 126 (281)
T COG4757 89 LDFPAALAALKKALPGH---PLYFVGHSFGGQALGLLGQHP 126 (281)
T ss_pred cchHHHHHHHHhhCCCC---ceEEeeccccceeecccccCc
Confidence 4888999999763 332 334489999999866655544
No 222
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=32.74 E-value=26 Score=27.74 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=19.2
Q ss_pred ccceeccHHHHHHhhcC--CCccEEE
Q 040163 30 RVPNADRTEVAVELAKH--EFIQAVV 53 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~~--~~v~A~v 53 (123)
.||+++||-+++.+|+. ..|+..+
T Consensus 132 lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 132 LVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred EEEeCcHHHHHHHHHHhCccccccee
Confidence 58999999999999863 4566666
No 223
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=32.57 E-value=52 Score=27.30 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=13.1
Q ss_pred cceeccHHHHHHhhc
Q 040163 31 VPNADRTEVAVELAK 45 (123)
Q Consensus 31 vGfC~GG~~a~~~a~ 45 (123)
+|-|.||-++++.|+
T Consensus 189 ~G~s~G~yla~l~~k 203 (403)
T PF11144_consen 189 IGSSHGGYLAHLCAK 203 (403)
T ss_pred EecCcHHHHHHHHHh
Confidence 578999999999875
No 224
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=32.37 E-value=49 Score=25.66 Aligned_cols=108 Identities=10% Similarity=0.133 Sum_probs=58.5
Q ss_pred hhhhHHHHHHhchhhhcCCC--ceeecccccceeccHHHHHHhhcC---CC-ccEEEEec--CC----------------
Q 040163 3 ALTLIKDYIQALDPVWAQPE--KIWISRFRVPNADRTEVAVELAKH---EF-IQAVVLLH--PS---------------- 58 (123)
Q Consensus 3 ~~~~~~d~~~~~~~l~~~~~--~~~~~~~~vGfC~GG~~a~~~a~~---~~-v~A~v~~h--ps---------------- 58 (123)
|.++.+....+++.|..+.. ......|.||+|+|.++-+++.+. +. -.+..+|. |.
T Consensus 65 A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFNN~~a~~aIP~~~~l~~~l~~ 144 (250)
T PF07082_consen 65 AREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFNNFPADEAIPLLEQLAPALRL 144 (250)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEecCChHHHhhCchHhhhcccccc
Confidence 34556666667766665432 111234679999999998776542 11 11223321 10
Q ss_pred -C-CCccc-------cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 59 -F-VTVDD-------IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 59 -~-~~~~d-------~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
+ .++++ -..++-=+|+-+.+|+ .++...+++.|+++...-.++..-|| .|--
T Consensus 145 EF~PsP~ET~~li~~~Y~~~rnLLIkF~~D~----iDqt~~L~~~L~~r~~~~~~~~~L~G-~HLT 205 (250)
T PF07082_consen 145 EFTPSPEETRRLIRESYQVRRNLLIKFNDDD----IDQTDELEQILQQRFPDMVSIQTLPG-NHLT 205 (250)
T ss_pred CccCCHHHHHHHHHHhcCCccceEEEecCCC----ccchHHHHHHHhhhccccceEEeCCC-CCCC
Confidence 0 01111 1224444666665553 35778888999876443456666765 5543
No 225
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=1e+02 Score=24.51 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=34.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCC-CeEEEEeCCCCeeec
Q 040163 70 VPIAVLRAEFDQISPLALLKQFEEVLTDKSEV-DGYVKIFLKFSHGWT 116 (123)
Q Consensus 70 ~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~-~~~~~vYpG~~HGF~ 116 (123)
+|+++.||--|.-.. ..+..+.+.+.+.+|. .+-+.++.|..++|.
T Consensus 24 ~P~ii~HGigd~c~~-~~~~~~~q~l~~~~g~~v~~leig~g~~~s~l 70 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSS-LSMANLTQLLEELPGSPVYCLEIGDGIKDSSL 70 (296)
T ss_pred CCEEEEeccCccccc-chHHHHHHHHHhCCCCeeEEEEecCCcchhhh
Confidence 999999999997666 3455666666665553 468899999888874
No 226
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=31.73 E-value=35 Score=25.64 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=26.6
Q ss_pred HHHHHHhchhhhcCCCceeeccc-ccceeccHHHHHHhhc
Q 040163 7 IKDYIQALDPVWAQPEKIWISRF-RVPNADRTEVAVELAK 45 (123)
Q Consensus 7 ~~d~~~~~~~l~~~~~~~~~~~~-~vGfC~GG~~a~~~a~ 45 (123)
-+|+.+|.++-.+.-++ -+.| .+|+|.|+.+..+|.+
T Consensus 77 y~DV~~AF~~yL~~~n~--GRPfILaGHSQGs~~l~~LL~ 114 (207)
T PF11288_consen 77 YSDVRAAFDYYLANYNN--GRPFILAGHSQGSMHLLRLLK 114 (207)
T ss_pred HHHHHHHHHHHHHhcCC--CCCEEEEEeChHHHHHHHHHH
Confidence 37899998876654332 1344 3699999999999875
No 227
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=31.27 E-value=46 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=18.9
Q ss_pred cceeccHHHHHHhhcC--C--CccEEEEecCC
Q 040163 31 VPNADRTEVAVELAKH--E--FIQAVVLLHPS 58 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~--~--~v~A~v~~hps 58 (123)
||||+|+.+|-.++.. . .+.-+...=|+
T Consensus 155 IGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 155 IGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp EEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred EeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 8889999999887752 3 46666665554
No 228
>PLN02753 triacylglycerol lipase
Probab=31.04 E-value=46 Score=28.59 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=13.0
Q ss_pred ccceeccHHHHHHhh
Q 040163 30 RVPNADRTEVAVELA 44 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a 44 (123)
++|+|+||.+|.+.|
T Consensus 316 VTGHSLGGALAtLaA 330 (531)
T PLN02753 316 VTGHSLGGALAILSA 330 (531)
T ss_pred EEccCHHHHHHHHHH
Confidence 379999999998876
No 229
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=29.94 E-value=1.1e+02 Score=22.67 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=27.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 040163 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 68 I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~ 97 (123)
..-|++.+.|..+..++.++++.+.+-|..
T Consensus 52 ~~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~ 81 (207)
T PF13709_consen 52 FFYPFLYWPGHGDFPLSDEEIANLRRYLEN 81 (207)
T ss_pred HhCCEEEEeCCCCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999999999999986
No 230
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.59 E-value=1.5e+02 Score=18.28 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=34.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeecc
Q 040163 68 VEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTV 117 (123)
Q Consensus 68 I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~ 117 (123)
.+.=|++.+|-.+ .......+.+.|.++ .+.+..|.--+||-..
T Consensus 15 ~k~~v~i~HG~~e---h~~ry~~~a~~L~~~---G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 15 PKAVVVIVHGFGE---HSGRYAHLAEFLAEQ---GYAVFAYDHRGHGRSE 58 (79)
T ss_pred CCEEEEEeCCcHH---HHHHHHHHHHHHHhC---CCEEEEECCCcCCCCC
Confidence 6777899999887 445667788888763 7899999999999854
No 231
>PLN02847 triacylglycerol lipase
Probab=28.57 E-value=1.3e+02 Score=26.56 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=34.2
Q ss_pred cceeccHHHHHHhhc----C---CCccEEEEecCCCCCccccccCCCcEEEEecCCCCCCC---HHHHHHHHHHH
Q 040163 31 VPNADRTEVAVELAK----H---EFIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQISP---LALLKQFEEVL 95 (123)
Q Consensus 31 vGfC~GG~~a~~~a~----~---~~v~A~v~~hps~~~~~d~~~I~~Pvl~~~g~~D~~~p---~e~~~~~~~~l 95 (123)
+|+|+||.+|..++. + +.+.+....-|..++. ++.....+++.-+--.+.+|| ...++.+...+
T Consensus 256 TGHSLGGGVAALLAilLRe~~~fssi~CyAFgPp~cvS~-eLAe~~k~fVTSVVng~DIVPRLS~~Sl~dLR~EV 329 (633)
T PLN02847 256 VGHSLGGGTAALLTYILREQKEFSSTTCVTFAPAACMTW-DLAESGKHFITTIINGSDLVPTFSAASVDDLRSEV 329 (633)
T ss_pred eccChHHHHHHHHHHHHhcCCCCCCceEEEecCchhcCH-HHHHHhhhheEEEEeCCCCCccCCHHHHHHHHHHH
Confidence 799999999987753 1 2344433333444543 233334465444333344555 44555555544
No 232
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=27.60 E-value=32 Score=25.06 Aligned_cols=32 Identities=9% Similarity=-0.106 Sum_probs=22.0
Q ss_pred HHHHHhchhhhcCCCceeecccccceeccHHHHHHhhc
Q 040163 8 KDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 8 ~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~ 45 (123)
+.+...+++.+.. ..+. +|-|||+..++...-
T Consensus 85 ~El~~i~dwa~~~--v~st----l~iCWgaqaal~~~y 116 (175)
T cd03131 85 EELTEILDWAKTH--VTST----LFSCWAAMAALYYFY 116 (175)
T ss_pred HHHHHHHHHHHHh--Ccch----HHHHHHHHHHHHHHc
Confidence 3677778888644 2333 566999999888653
No 233
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=27.58 E-value=31 Score=22.80 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCC-CC---eEEEEeCCCCeeeccCCCCCC
Q 040163 87 LLKQFEEVLTDKSE-VD---GYVKIFLKFSHGWTVRYNVED 123 (123)
Q Consensus 87 ~~~~~~~~l~~~~~-~~---~~~~vYpG~~HGF~~r~~~~d 123 (123)
+..++++.|.++.- -| -++-.|.+ .|+|+.+...+|
T Consensus 24 qL~~~~k~La~~GLkDPW~RNevwrY~~-ph~~~~~~~f~~ 63 (100)
T KOG4631|consen 24 QLETIQKKLAAKGLKDPWGRNEVWRYMG-PHGFAKSVSFSD 63 (100)
T ss_pred cHHHHHHHHHHccccCchhcchhhhccC-cccceeeeeehh
Confidence 45567777776311 23 37778987 999988877654
No 234
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=27.54 E-value=3.5e+02 Score=22.20 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=37.4
Q ss_pred HhhcCCCccEEEEecCCCCCc----cccccCCCcEEEEecCCCCCC--------CHHHHHHHHHHHhhcCCCCeEEEE
Q 040163 42 ELAKHEFIQAVVLLHPSFVTV----DDIEAVEVPIAVLRAEFDQIS--------PLALLKQFEEVLTDKSEVDGYVKI 107 (123)
Q Consensus 42 ~~a~~~~v~A~v~~hps~~~~----~d~~~I~~Pvl~~~g~~D~~~--------p~e~~~~~~~~l~~~~~~~~~~~v 107 (123)
+.+....+++.+..++++.+. .-+...++|+++..-.+.+.. ..-....+-..|.+ .|+++++.+
T Consensus 57 ~~~~~~~~d~ii~~~~tf~~~~~~~~~~~~~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~r-~gi~~~~v~ 133 (452)
T cd00578 57 EEFNEANCDGLIVWMHTFGPAKMWIAGLSELRKPVLLLATQFNREIPDFMNLNQSACGLREFGNILAR-LGIPFKVVY 133 (452)
T ss_pred HHHhhcCCcEEEEcccccccHHHHHHHHHhcCCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHHH-cCCceeEEE
Confidence 333344688888888877653 334567888877665442211 11133455666666 467766543
No 235
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=27.13 E-value=29 Score=21.95 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCCeee-ccC
Q 040163 101 VDGYVKIFLKFSHGW-TVR 118 (123)
Q Consensus 101 ~~~~~~vYpG~~HGF-~~r 118 (123)
+.-++++|||+.|.| +|+
T Consensus 43 ~G~~v~l~~GCDkt~~tC~ 61 (80)
T PF09356_consen 43 VGDTVTLYPGCDKTFATCR 61 (80)
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 466899999999999 443
No 236
>PLN02719 triacylglycerol lipase
Probab=27.00 E-value=59 Score=27.88 Aligned_cols=15 Identities=20% Similarity=-0.048 Sum_probs=12.9
Q ss_pred ccceeccHHHHHHhh
Q 040163 30 RVPNADRTEVAVELA 44 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a 44 (123)
++|.|+||.+|.+.|
T Consensus 302 VTGHSLGGALAtLaA 316 (518)
T PLN02719 302 VTGHSLGGALAVLSA 316 (518)
T ss_pred EecCcHHHHHHHHHH
Confidence 379999999998866
No 237
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=26.44 E-value=2.1e+02 Score=22.08 Aligned_cols=46 Identities=22% Similarity=0.051 Sum_probs=35.0
Q ss_pred ccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeee
Q 040163 66 EAVEVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGW 115 (123)
Q Consensus 66 ~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF 115 (123)
.|+.--.+++..++ |.+..+++.+.|+++.+++..+.++.-.++-|
T Consensus 110 SN~~~g~v~LLP~D----Pd~sA~~ir~~l~~~~g~~v~VIItDt~gr~~ 155 (243)
T TIGR01916 110 SNVGNGELLLLPED----PDASAEKIRRGLRELTGVDVGVIITDTNGRPF 155 (243)
T ss_pred ccCCCCeEEecCCC----hHHHHHHHHHHHHHHHCCCEEEEEECCCCCcc
Confidence 34433355666655 88899999999999989999999998766665
No 238
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=26.22 E-value=33 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=14.8
Q ss_pred cccccceeccHHHHHHhhc
Q 040163 27 SRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 27 ~~~~vGfC~GG~~a~~~a~ 45 (123)
+++-+-||.||..++.-|+
T Consensus 23 r~y~iDFCCGG~~~L~~Aa 41 (221)
T COG2846 23 RSYDIDFCCGGKVTLERAA 41 (221)
T ss_pred HHcCCceecCChHHHHHHH
Confidence 3445789999999998765
No 239
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=25.61 E-value=56 Score=25.94 Aligned_cols=31 Identities=10% Similarity=-0.120 Sum_probs=21.1
Q ss_pred HHHHHhchhhhcCCCceeecccccceeccHHHHHHhh
Q 040163 8 KDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELA 44 (123)
Q Consensus 8 ~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a 44 (123)
.++...++++++. +.++ +|-|||.-+++...
T Consensus 122 ~El~~i~~w~~~~--~~s~----LgICwGaQa~a~al 152 (302)
T PRK05368 122 DELKEILDWAKTH--VTST----LFICWAAQAALYHL 152 (302)
T ss_pred HHHHHHHHHHHHc--CCCE----EEEcHHHHHHHHHc
Confidence 3466777777654 3333 67799999987754
No 240
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=25.40 E-value=1.7e+02 Score=24.55 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=42.8
Q ss_pred ccEEEEecCCCCCccc---cccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEE
Q 040163 49 IQAVVLLHPSFVTVDD---IEAV-EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKI 107 (123)
Q Consensus 49 v~A~v~~hps~~~~~d---~~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~v 107 (123)
.|++-+.||...+..| ...+ +.|++-.++..=-....+....+++.+++ .++++|.-+
T Consensus 316 aD~ahaihPny~~~hd~~n~p~ln~G~vik~~an~ry~td~~~~a~~~~l~~~-~~Vp~Q~f~ 377 (437)
T COG1362 316 ADVAHAIHPNYPEKHDPNNAPKLNKGPVIKVNANQRYATDSEGIALLRKLAQK-AGVPWQVFV 377 (437)
T ss_pred hhhHhhcCCCCccccCcccCCccCCCceEEecCCCCcccCchHHHHHHHHHHH-cCCceEEEE
Confidence 4667778998766432 3333 58899988877666677888889999888 689998754
No 241
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=25.34 E-value=25 Score=20.82 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=14.5
Q ss_pred cccccceeccHHHHHHhhc
Q 040163 27 SRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 27 ~~~~vGfC~GG~~a~~~a~ 45 (123)
..+.+-||-||...+.-|.
T Consensus 20 ~~~gIDfCCgG~~~L~eA~ 38 (56)
T PF04405_consen 20 RKYGIDFCCGGNRSLEEAC 38 (56)
T ss_pred HHcCCcccCCCCchHHHHH
Confidence 3445789999999888664
No 242
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=25.12 E-value=37 Score=23.24 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=13.4
Q ss_pred ccceeccHHHHHHhhc
Q 040163 30 RVPNADRTEVAVELAK 45 (123)
Q Consensus 30 ~vGfC~GG~~a~~~a~ 45 (123)
.+|+|+||.+++.++.
T Consensus 68 l~g~s~Gg~~a~~~a~ 83 (212)
T smart00824 68 LVGHSSGGLLAHAVAA 83 (212)
T ss_pred EEEECHHHHHHHHHHH
Confidence 3799999999988765
No 243
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=24.99 E-value=42 Score=26.09 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=12.9
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 136 G~a~GgG~~lalacD 150 (302)
T PRK08272 136 GYCVAGGTDIALHCD 150 (302)
T ss_pred cEeehhhHHHHHhCC
Confidence 899999999888753
No 244
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=24.60 E-value=67 Score=28.33 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=24.4
Q ss_pred ccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 040163 66 EAV-EVPIAVLRAEFDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 66 ~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~ 97 (123)
.+| -.|.++++|..|.++|...-..-.-.|.+
T Consensus 551 g~L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~ 583 (690)
T PF10605_consen 551 GNLHGKPAIIVHGRSDALLPVNHTSRPYLGLNR 583 (690)
T ss_pred CCcCCCceEEEecccceecccCCCchHHHHHhh
Confidence 346 68999999999999998855555555543
No 245
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=24.37 E-value=26 Score=26.01 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=13.9
Q ss_pred cccccceeccHHHHHHhhc
Q 040163 27 SRFRVPNADRTEVAVELAK 45 (123)
Q Consensus 27 ~~~~vGfC~GG~~a~~~a~ 45 (123)
.++.++||.||.-++.-|.
T Consensus 16 ~~~gid~cc~g~~~l~~a~ 34 (216)
T TIGR03652 16 RKYGIDFCCGGNVSLAEAC 34 (216)
T ss_pred HHcCCCccCCCcchHHHHH
Confidence 4556788999987777553
No 246
>PRK02813 putative aminopeptidase 2; Provisional
Probab=24.05 E-value=3.1e+02 Score=22.75 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=38.6
Q ss_pred ccEEEEecCCCCCcccc---ccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeC
Q 040163 49 IQAVVLLHPSFVTVDDI---EAV-EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFL 109 (123)
Q Consensus 49 v~A~v~~hps~~~~~d~---~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYp 109 (123)
++.+.+.||......+. ..+ +.|++-..+..--..+.+....+++..++ .++++|..+-.
T Consensus 308 ~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~-~~Ip~Q~~v~~ 371 (428)
T PRK02813 308 ADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEK-AGVPYQEFVNR 371 (428)
T ss_pred EeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHH-cCCCEEEEEec
Confidence 56666779987654332 223 58888765433333556677777777666 78999987665
No 247
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=24.01 E-value=47 Score=25.12 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=13.0
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 103 G~a~GgG~~lalacD 117 (261)
T PRK03580 103 GYAFGGGFELALAAD 117 (261)
T ss_pred CeeehHHHHHHHHCC
Confidence 889999999888763
No 248
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=23.82 E-value=50 Score=24.96 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=12.9
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 101 G~a~GgG~~lalacD 115 (255)
T PRK08150 101 GAVVGGGLELASAAH 115 (255)
T ss_pred CEEEcHHHHHHHhCC
Confidence 889999999888753
No 249
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=23.62 E-value=27 Score=13.68 Aligned_cols=6 Identities=0% Similarity=-0.534 Sum_probs=3.1
Q ss_pred ceeccH
Q 040163 32 PNADRT 37 (123)
Q Consensus 32 GfC~GG 37 (123)
||.+||
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 455555
No 250
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=23.24 E-value=52 Score=24.91 Aligned_cols=14 Identities=7% Similarity=-0.201 Sum_probs=12.4
Q ss_pred ceeccHHHHHHhhc
Q 040163 32 PNADRTEVAVELAK 45 (123)
Q Consensus 32 GfC~GG~~a~~~a~ 45 (123)
|+|+||.+.+.++.
T Consensus 112 G~a~GgG~~lalac 125 (266)
T PRK09245 112 GPAIGAGCDLACMC 125 (266)
T ss_pred CEeecHHHHHHHhC
Confidence 88999999988875
No 251
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=23.02 E-value=1.1e+02 Score=25.85 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.1
Q ss_pred cccccCCCcEEEEecCCCCCCCHHHHHHHHHHHh
Q 040163 63 DDIEAVEVPIAVLRAEFDQISPLALLKQFEEVLT 96 (123)
Q Consensus 63 ~d~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~ 96 (123)
+++.+|++|+++..|-.| .......+.++....
T Consensus 226 ~~~~~i~vP~l~~~gw~D-~~~~g~~~~~~~~~~ 258 (550)
T TIGR00976 226 RDLGGSDVPTLVTGGWYD-NHSRGSIRLFLAVHR 258 (550)
T ss_pred hHhcCCCCCEEEeCcccC-CCCchHHHHHHHHhh
Confidence 467789999999999999 566677777766654
No 252
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=22.84 E-value=51 Score=24.89 Aligned_cols=14 Identities=7% Similarity=-0.339 Sum_probs=12.5
Q ss_pred ceeccHHHHHHhhc
Q 040163 32 PNADRTEVAVELAK 45 (123)
Q Consensus 32 GfC~GG~~a~~~a~ 45 (123)
|+|+||.+.+.++.
T Consensus 103 G~a~GgG~~lal~c 116 (256)
T TIGR03210 103 GYAIGGGNVLVTIC 116 (256)
T ss_pred CEEehhhHHHHHhC
Confidence 88999999988875
No 253
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=22.64 E-value=52 Score=24.90 Aligned_cols=15 Identities=13% Similarity=-0.159 Sum_probs=12.8
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 109 G~a~GgG~~lala~D 123 (262)
T PRK07468 109 GQAFGGGVGLISVCD 123 (262)
T ss_pred CEEEhHHHHHHHhCC
Confidence 889999999888753
No 254
>PLN02606 palmitoyl-protein thioesterase
Probab=22.51 E-value=2.8e+02 Score=22.21 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=33.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCC-eEEEEeCCCCeee
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVD-GYVKIFLKFSHGW 115 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~-~~~~vYpG~~HGF 115 (123)
..|+++.||--|.-... .+..+.+.+.+..+.+ +.++++.+...+|
T Consensus 26 ~~PvViwHGlgD~~~~~-~~~~~~~~i~~~~~~pg~~v~ig~~~~~s~ 72 (306)
T PLN02606 26 SVPFVLFHGFGGECSNG-KVSNLTQFLINHSGYPGTCVEIGNGVQDSL 72 (306)
T ss_pred CCCEEEECCCCcccCCc-hHHHHHHHHHhCCCCCeEEEEECCCccccc
Confidence 68999999999877665 7788888886433544 3556676665666
No 255
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=22.40 E-value=1.1e+02 Score=24.42 Aligned_cols=58 Identities=10% Similarity=0.210 Sum_probs=43.5
Q ss_pred hcCCCceeecccc-c-ceeccHHHHHHhhcCCCccEEEEecCCCCCccccccCCCcEEEE
Q 040163 18 WAQPEKIWISRFR-V-PNADRTEVAVELAKHEFIQAVVLLHPSFVTVDDIEAVEVPIAVL 75 (123)
Q Consensus 18 ~~~~~~~~~~~~~-v-GfC~GG~~a~~~a~~~~v~A~v~~hps~~~~~d~~~I~~Pvl~~ 75 (123)
|.+.+.|-|+|=+ | ==|||..+.-++.....++.++..-|.+-+.+|+.++-.|=|++
T Consensus 14 Wd~lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPdw~~~~df~~lG~PrLff 73 (302)
T PF08497_consen 14 WDELDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPDWRSPEDFKRLGRPRLFF 73 (302)
T ss_pred CccccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHhCCCcEEE
Confidence 4455555554432 2 24788888888777778999999999999889999999996554
No 256
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.40 E-value=48 Score=27.34 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=24.4
Q ss_pred hhHHHHH-HhchhhhcCCCceeeccc------ccceeccHHHHHHhhc
Q 040163 5 TLIKDYI-QALDPVWAQPEKIWISRF------RVPNADRTEVAVELAK 45 (123)
Q Consensus 5 ~~~~d~~-~~~~~l~~~~~~~~~~~~------~vGfC~GG~~a~~~a~ 45 (123)
++-++|. ..++.+++.|+..-..+- --|||||=+-|+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~ 60 (387)
T PRK13371 13 ALETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAY 60 (387)
T ss_pred HHHHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHH
Confidence 3344443 345677776653322111 1699999999988774
No 257
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=22.15 E-value=56 Score=24.68 Aligned_cols=15 Identities=20% Similarity=-0.028 Sum_probs=13.0
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 103 G~a~GgG~~lalacD 117 (259)
T PRK06494 103 GVAMGGGFELALACD 117 (259)
T ss_pred CEEecHHHHHHHhCC
Confidence 889999999888763
No 258
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=22.13 E-value=4.1e+02 Score=22.32 Aligned_cols=60 Identities=7% Similarity=0.037 Sum_probs=40.2
Q ss_pred ccEEEEecCCCCCcccc---ccC-CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeC
Q 040163 49 IQAVVLLHPSFVTVDDI---EAV-EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFL 109 (123)
Q Consensus 49 v~A~v~~hps~~~~~d~---~~I-~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYp 109 (123)
+|.+.+.||......+. ..+ +.|++-..+..=.....+....+++..++ .++++|..+-.
T Consensus 335 ~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~-~~Ip~Q~~~~~ 398 (465)
T PTZ00371 335 VDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKK-ANIPIQEFVVK 398 (465)
T ss_pred EecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHH-cCCCEEEEEec
Confidence 46666789987654332 223 58888766555445567777777777777 68999986654
No 259
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=21.97 E-value=2.6e+02 Score=20.18 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=29.6
Q ss_pred cccCCCcEEEEecCCCCCCCHHHHHHHHHHHhhc-CCCCeEEEEeCCC
Q 040163 65 IEAVEVPIAVLRAEFDQISPLALLKQFEEVLTDK-SEVDGYVKIFLKF 111 (123)
Q Consensus 65 ~~~I~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~-~~~~~~~~vYpG~ 111 (123)
.+-++.|+.++++.+| |.+....+++--+.+ ...+...-+++|.
T Consensus 73 ~~~l~Gp~ai~fs~~d---p~~~~K~~~~f~k~~~~~~~~~~~~~eg~ 117 (175)
T COG0244 73 DDLLKGPTAIAFSNED---PVAAAKLLKDFAKEAGDKAPIKGGVPEGK 117 (175)
T ss_pred HHhccCCeEEEEecCC---HHHHHHHHHHHhhhhcccceEEEEEecCc
Confidence 3568999999999999 556555555555542 3345666666653
No 260
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=21.68 E-value=96 Score=24.30 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=25.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTD 97 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~ 97 (123)
..+||+..|+.|-++|.-..+.+.+.|+-
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w 261 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNY 261 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCC
Confidence 47999999999999999888888888873
No 261
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=21.65 E-value=1.2e+02 Score=22.77 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=19.8
Q ss_pred cceeccHHHHHHhhcCCCccEEEEecCC
Q 040163 31 VPNADRTEVAVELAKHEFIQAVVLLHPS 58 (123)
Q Consensus 31 vGfC~GG~~a~~~a~~~~v~A~v~~hps 58 (123)
|++|||=++|-+...+..++-.++..++
T Consensus 62 vAWSmGVw~A~~~l~~~~~~~aiAINGT 89 (213)
T PF04301_consen 62 VAWSMGVWAANRVLQGIPFKRAIAINGT 89 (213)
T ss_pred EEEeHHHHHHHHHhccCCcceeEEEECC
Confidence 8999999998776555456655555544
No 262
>PRK03661 hypothetical protein; Validated
Probab=21.49 E-value=2.6e+02 Score=20.00 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=49.9
Q ss_pred HHhchhhhcCCCceeecccccceeccHHHHHHhhcCC----CccEEEEecCCCCCccccccCCCcEEEEecCCCCCCCHH
Q 040163 11 IQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKHE----FIQAVVLLHPSFVTVDDIEAVEVPIAVLRAEFDQISPLA 86 (123)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~~----~v~A~v~~hps~~~~~d~~~I~~Pvl~~~g~~D~~~p~e 86 (123)
....+.|+++..++++.-. |=||.++..+..-| -+..++..|-.-. ...+-.+..-++--+| .+..+
T Consensus 11 ~~v~~~L~~~~~tla~AES----~TgGlia~~lt~vpGaS~~f~Gg~VtYs~~~-K~~lLgV~~~~i~~~g----avS~e 81 (164)
T PRK03661 11 EQVGQALKARGATVTTAES----CTGGWVAKVITDIAGSSAWFERGFVTYSNEA-KAQMIGVREETLAQHG----AVSEP 81 (164)
T ss_pred HHHHHHHHHCCCEEEeeHh----hhhHHHHHHHHcCCCchhhcCCceEEEcHHH-HHHHcCCCHHHHHhcC----CCCHH
Confidence 3455667777778887776 89999999987643 2444444442111 1112222222222233 35677
Q ss_pred HHHHHHHHHhhcCCCCeEEEE
Q 040163 87 LLKQFEEVLTDKSEVDGYVKI 107 (123)
Q Consensus 87 ~~~~~~~~l~~~~~~~~~~~v 107 (123)
...+|.+..+++.+.++-+-+
T Consensus 82 ~a~~MA~g~~~~~~ad~~ia~ 102 (164)
T PRK03661 82 VVVEMAIGALKAARADYAVSI 102 (164)
T ss_pred HHHHHHHHHHHHcCCCEEEEe
Confidence 778887777776555554433
No 263
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=21.01 E-value=92 Score=24.80 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=50.9
Q ss_pred hHHHHHHhchhhhc-----CCC--ceeeccc-ccceeccHHHHHHhhcC----CCccEEEEecCCC------------CC
Q 040163 6 LIKDYIQALDPVWA-----QPE--KIWISRF-RVPNADRTEVAVELAKH----EFIQAVVLLHPSF------------VT 61 (123)
Q Consensus 6 ~~~d~~~~~~~l~~-----~~~--~~~~~~~-~vGfC~GG~~a~~~a~~----~~v~A~v~~hps~------------~~ 61 (123)
-+++..+..+||.. .|+ +.-...+ .+|.++||+.|+.+|-+ -.+.|.+..-|-- ++
T Consensus 92 Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~~t~P~iLt 171 (307)
T PF07224_consen 92 EIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGKQTPPPILT 171 (307)
T ss_pred HHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCCCCCCCeee
Confidence 34566666666643 232 1112333 27999999999988743 2355666544421 11
Q ss_pred -ccccccCCCcEEEEecCCC-------CCCCHH--HHHHHHHHHhh
Q 040163 62 -VDDIEAVEVPIAVLRAEFD-------QISPLA--LLKQFEEVLTD 97 (123)
Q Consensus 62 -~~d~~~I~~Pvl~~~g~~D-------~~~p~e--~~~~~~~~l~~ 97 (123)
...--++..|++++-..-- +-+.++ .-+++..+-+.
T Consensus 172 y~p~SF~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~ 217 (307)
T PF07224_consen 172 YVPQSFDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKP 217 (307)
T ss_pred cCCcccccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcc
Confidence 1234467799998876555 333344 33456555553
No 264
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=20.60 E-value=63 Score=24.33 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=12.9
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 106 G~a~GgG~~lal~cD 120 (260)
T PRK05809 106 GFALGGGCELSMACD 120 (260)
T ss_pred CeeecHHHHHHHhCC
Confidence 889999999888763
No 265
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=20.55 E-value=1.5e+02 Score=21.91 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=23.2
Q ss_pred hHHHHHHhchhhhcCCCceeecccccceeccHHHHHHhhcC
Q 040163 6 LIKDYIQALDPVWAQPEKIWISRFRVPNADRTEVAVELAKH 46 (123)
Q Consensus 6 ~~~d~~~~~~~l~~~~~~~~~~~~~vGfC~GG~~a~~~a~~ 46 (123)
+.+.....+..+...| |. +.-..=|+|.||.+.+.++..
T Consensus 75 ~~~~~~~l~~~l~~~~-kp-~Iaav~G~a~GgG~~lala~D 113 (245)
T PF00378_consen 75 FFRRFQELLSRLANFP-KP-TIAAVNGHAVGGGFELALACD 113 (245)
T ss_dssp HHHHHHHHHHHHHHSS-SE-EEEEESSEEETHHHHHHHHSS
T ss_pred cchhhccccccchhhh-hh-eeecccccccccccccccccc
Confidence 3444555555555555 22 222223889999998888764
No 266
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=20.41 E-value=56 Score=24.63 Aligned_cols=14 Identities=14% Similarity=-0.204 Sum_probs=12.4
Q ss_pred ceeccHHHHHHhhc
Q 040163 32 PNADRTEVAVELAK 45 (123)
Q Consensus 32 GfC~GG~~a~~~a~ 45 (123)
|+|+||.+.+.++.
T Consensus 109 G~a~GgG~~lal~c 122 (260)
T PRK05980 109 GLAFGGGCEITEAV 122 (260)
T ss_pred CEEEhhhhHHhHhC
Confidence 88999999988875
No 267
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=20.33 E-value=60 Score=24.65 Aligned_cols=15 Identities=7% Similarity=-0.059 Sum_probs=13.0
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 117 G~a~GgG~~lala~D 131 (272)
T PRK06210 117 GACAGIGLTHALMCD 131 (272)
T ss_pred CeeehHHHHHHHhCC
Confidence 889999999888764
No 268
>PRK10673 acyl-CoA esterase; Provisional
Probab=20.32 E-value=3.3e+02 Score=19.35 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCCCeEEEEeCCCCeeeccC
Q 040163 69 EVPIAVLRAEFDQISPLALLKQFEEVLTDKSEVDGYVKIFLKFSHGWTVR 118 (123)
Q Consensus 69 ~~Pvl~~~g~~D~~~p~e~~~~~~~~l~~~~~~~~~~~vYpG~~HGF~~r 118 (123)
+-|++++||-.. +......+...|.+ .+.+..++--+||...+
T Consensus 16 ~~~iv~lhG~~~---~~~~~~~~~~~l~~----~~~vi~~D~~G~G~s~~ 58 (255)
T PRK10673 16 NSPIVLVHGLFG---SLDNLGVLARDLVN----DHDIIQVDMRNHGLSPR 58 (255)
T ss_pred CCCEEEECCCCC---chhHHHHHHHHHhh----CCeEEEECCCCCCCCCC
Confidence 578999999766 34455566666654 46778887778887543
No 269
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=20.26 E-value=66 Score=24.30 Aligned_cols=15 Identities=20% Similarity=-0.013 Sum_probs=12.9
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 104 G~a~GgG~~lalacD 118 (258)
T PRK09076 104 GYAMGGGLECALACD 118 (258)
T ss_pred CEEecHHHHHHHhCC
Confidence 899999999888753
No 270
>PRK08788 enoyl-CoA hydratase; Validated
Probab=20.14 E-value=63 Score=25.19 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.8
Q ss_pred ceeccHHHHHHhhcC
Q 040163 32 PNADRTEVAVELAKH 46 (123)
Q Consensus 32 GfC~GG~~a~~~a~~ 46 (123)
|+|+||.+.+.++..
T Consensus 130 G~a~GgG~~LalacD 144 (287)
T PRK08788 130 GDALGGGFEAALSHH 144 (287)
T ss_pred CeeehHHHHHHHhCC
Confidence 889999999888753
No 271
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=20.11 E-value=61 Score=25.23 Aligned_cols=14 Identities=7% Similarity=-0.187 Sum_probs=12.4
Q ss_pred ceeccHHHHHHhhc
Q 040163 32 PNADRTEVAVELAK 45 (123)
Q Consensus 32 GfC~GG~~a~~~a~ 45 (123)
|+|+||.+.+-++.
T Consensus 121 G~a~GgG~~Lalac 134 (298)
T PRK12478 121 GWCVGGASDYALCA 134 (298)
T ss_pred cEEehhHHHHHHHC
Confidence 88999999988875
Done!