Query 040165
Match_columns 358
No_of_seqs 139 out of 1516
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.9E-33 4.2E-38 243.6 25.6 216 99-330 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.6 4.3E-14 9.2E-19 115.6 17.4 147 196-351 1-164 (164)
3 PLN03215 ascorbic acid mannose 99.6 1.3E-13 2.8E-18 124.1 20.7 312 2-353 5-373 (373)
4 KOG4441 Proteins containing BT 99.6 8.1E-14 1.8E-18 134.9 19.1 214 98-337 327-555 (571)
5 PHA02713 hypothetical protein; 99.6 1.3E-13 2.7E-18 134.0 19.0 215 98-336 298-541 (557)
6 PF08268 FBA_3: F-box associat 99.6 1.8E-13 4E-18 107.2 14.6 112 196-315 1-118 (129)
7 PHA02790 Kelch-like protein; P 99.5 3.7E-12 8.1E-17 121.9 21.5 185 114-335 287-477 (480)
8 PHA02713 hypothetical protein; 99.5 1.9E-12 4E-17 125.8 18.8 199 115-339 273-500 (557)
9 PHA03098 kelch-like protein; P 99.5 6.2E-12 1.3E-16 122.6 21.3 199 114-335 311-518 (534)
10 KOG4441 Proteins containing BT 99.5 2.7E-12 5.8E-17 124.4 17.7 198 114-339 301-510 (571)
11 TIGR03547 muta_rot_YjhT mutatr 99.3 5.9E-10 1.3E-14 102.7 22.4 228 98-339 12-309 (346)
12 PLN02153 epithiospecifier prot 99.3 7.5E-10 1.6E-14 101.7 22.7 225 98-335 27-291 (341)
13 TIGR03548 mutarot_permut cycli 99.3 1.6E-09 3.4E-14 98.8 21.5 199 115-335 40-286 (323)
14 PRK14131 N-acetylneuraminic ac 99.2 4.5E-09 9.7E-14 97.8 23.2 228 98-339 33-331 (376)
15 PHA03098 kelch-like protein; P 99.2 4.1E-10 8.8E-15 109.9 16.4 193 116-335 266-471 (534)
16 PLN02193 nitrile-specifier pro 99.2 7.9E-09 1.7E-13 98.8 23.2 201 115-335 194-417 (470)
17 PHA02790 Kelch-like protein; P 99.1 2E-09 4.3E-14 103.2 16.3 148 162-339 286-434 (480)
18 PLN02153 epithiospecifier prot 99.1 3.7E-08 8.1E-13 90.5 22.2 180 98-287 80-295 (341)
19 PLN02193 nitrile-specifier pro 99.0 5.3E-08 1.2E-12 93.2 20.9 158 163-335 193-358 (470)
20 PRK14131 N-acetylneuraminic ac 98.9 2.4E-07 5.2E-12 86.3 21.5 153 163-334 189-374 (376)
21 TIGR03547 muta_rot_YjhT mutatr 98.9 3E-07 6.4E-12 84.8 21.2 137 163-318 168-330 (346)
22 TIGR03548 mutarot_permut cycli 98.9 4.1E-07 8.8E-12 83.0 19.5 132 114-257 88-233 (323)
23 PF12937 F-box-like: F-box-lik 98.8 6.2E-10 1.4E-14 70.4 -0.2 42 1-43 1-42 (47)
24 PF00646 F-box: F-box domain; 98.6 2.3E-09 4.9E-14 68.2 -1.5 43 2-45 4-46 (48)
25 smart00256 FBOX A Receptor for 98.5 1.1E-08 2.4E-13 62.6 -0.9 39 4-43 1-39 (41)
26 KOG4693 Uncharacterized conser 98.4 7.3E-06 1.6E-10 69.4 13.0 213 112-339 42-286 (392)
27 KOG4693 Uncharacterized conser 98.2 7.6E-05 1.7E-09 63.4 13.4 189 113-319 104-312 (392)
28 KOG1230 Protein containing rep 98.1 0.00012 2.6E-09 66.0 14.6 211 114-339 98-350 (521)
29 KOG0281 Beta-TrCP (transducin 97.8 0.00053 1.1E-08 60.4 12.3 44 1-45 75-122 (499)
30 KOG0379 Kelch repeat-containin 97.8 0.001 2.2E-08 64.0 15.3 158 164-335 89-256 (482)
31 KOG0379 Kelch repeat-containin 97.5 0.012 2.6E-07 56.7 19.0 204 115-335 89-308 (482)
32 KOG1230 Protein containing rep 97.3 0.03 6.5E-07 51.0 17.3 153 163-329 98-276 (521)
33 PF08450 SGL: SMP-30/Gluconola 97.3 0.096 2.1E-06 45.6 22.2 208 100-339 8-223 (246)
34 PF13964 Kelch_6: Kelch motif 97.2 0.0009 1.9E-08 42.5 5.3 43 193-235 4-47 (50)
35 COG3055 Uncharacterized protei 97.2 0.0055 1.2E-07 54.6 10.9 181 162-354 112-354 (381)
36 PF01344 Kelch_1: Kelch motif; 96.8 0.003 6.5E-08 39.4 4.5 43 193-235 4-47 (47)
37 KOG2120 SCF ubiquitin ligase, 96.8 0.00025 5.4E-09 61.7 -0.9 38 2-40 99-136 (419)
38 PF07646 Kelch_2: Kelch motif; 96.2 0.016 3.4E-07 36.5 5.3 42 192-233 3-46 (49)
39 PF02191 OLF: Olfactomedin-lik 96.0 0.57 1.2E-05 40.9 15.7 130 186-339 65-213 (250)
40 smart00284 OLF Olfactomedin-li 96.0 0.32 7E-06 42.2 13.9 130 186-339 70-218 (255)
41 PF07250 Glyoxal_oxid_N: Glyox 95.8 0.61 1.3E-05 40.4 14.6 167 162-351 45-220 (243)
42 KOG2997 F-box protein FBX9 [Ge 95.7 0.0022 4.8E-08 56.1 -0.6 45 1-46 107-156 (366)
43 PF13418 Kelch_4: Galactose ox 95.0 0.038 8.3E-07 34.6 3.6 40 193-232 4-44 (49)
44 PF05096 Glu_cyclase_2: Glutam 94.7 2.7 5.8E-05 36.8 15.4 149 160-339 65-214 (264)
45 COG4257 Vgb Streptogramin lyas 94.1 1.3 2.8E-05 38.7 11.6 120 98-235 194-315 (353)
46 KOG4152 Host cell transcriptio 93.9 1.2 2.6E-05 42.1 11.9 216 114-339 57-312 (830)
47 COG3055 Uncharacterized protei 93.7 5.2 0.00011 36.2 15.8 138 162-318 195-358 (381)
48 PF01344 Kelch_1: Kelch motif; 93.3 0.27 6E-06 30.2 5.0 44 240-287 4-47 (47)
49 PF07893 DUF1668: Protein of u 93.2 3 6.5E-05 38.3 13.6 112 218-335 87-214 (342)
50 smart00612 Kelch Kelch domain. 93.1 0.2 4.4E-06 30.5 4.2 34 162-201 14-47 (47)
51 PF13360 PQQ_2: PQQ-like domai 92.7 5.8 0.00013 33.8 15.3 143 163-338 3-150 (238)
52 PRK11138 outer membrane biogen 92.6 9.1 0.0002 35.8 19.4 112 194-338 250-363 (394)
53 PLN02772 guanylate kinase 92.5 1.1 2.3E-05 41.6 9.4 76 193-273 27-107 (398)
54 PF07893 DUF1668: Protein of u 92.4 4.1 9E-05 37.4 13.4 116 103-236 76-221 (342)
55 smart00612 Kelch Kelch domain. 92.0 0.55 1.2E-05 28.5 5.1 44 203-247 2-46 (47)
56 PF13964 Kelch_6: Kelch motif 91.8 0.33 7.2E-06 30.4 4.0 44 240-287 4-47 (50)
57 KOG0310 Conserved WD40 repeat- 91.7 6.6 0.00014 36.9 13.4 193 120-351 8-207 (487)
58 PF06433 Me-amine-dh_H: Methyl 91.7 5 0.00011 36.4 12.5 121 195-335 188-327 (342)
59 KOG0274 Cdc4 and related F-box 91.4 15 0.00033 36.0 19.6 42 1-43 108-149 (537)
60 PF07646 Kelch_2: Kelch motif; 91.2 0.51 1.1E-05 29.5 4.3 44 241-286 5-48 (49)
61 COG4257 Vgb Streptogramin lyas 91.1 10 0.00022 33.3 16.0 214 98-339 67-315 (353)
62 PF07762 DUF1618: Protein of u 91.0 2.1 4.5E-05 33.2 8.6 76 217-292 6-102 (131)
63 TIGR01640 F_box_assoc_1 F-box 90.5 5.4 0.00012 34.2 11.5 119 198-339 3-137 (230)
64 PF13418 Kelch_4: Galactose ox 89.8 0.77 1.7E-05 28.5 4.2 15 321-335 30-44 (49)
65 TIGR03866 PQQ_ABC_repeats PQQ- 89.7 13 0.00029 32.5 23.5 188 112-335 51-244 (300)
66 PF10282 Lactonase: Lactonase, 89.5 17 0.00037 33.4 16.9 196 119-335 69-284 (345)
67 PRK11028 6-phosphogluconolacto 89.2 17 0.00037 32.9 17.4 140 161-329 10-157 (330)
68 PRK11138 outer membrane biogen 88.7 8.7 0.00019 36.0 12.3 112 194-335 63-185 (394)
69 PF10282 Lactonase: Lactonase, 88.3 21 0.00045 32.8 21.2 168 141-335 146-331 (345)
70 PF13415 Kelch_3: Galactose ox 88.2 2.1 4.5E-05 26.6 5.4 36 200-235 1-38 (49)
71 PF08450 SGL: SMP-30/Gluconola 87.6 18 0.00038 31.2 16.7 113 196-335 5-129 (246)
72 TIGR03300 assembly_YfgL outer 86.1 29 0.00062 32.2 20.9 112 194-338 235-348 (377)
73 cd01206 Homer Homer type EVH1 85.7 2.8 6E-05 31.0 5.4 41 113-159 10-51 (111)
74 COG2706 3-carboxymuconate cycl 85.6 28 0.00061 31.6 14.8 120 202-335 53-182 (346)
75 KOG3545 Olfactomedin and relat 85.1 23 0.00049 30.6 11.4 138 173-339 56-212 (249)
76 PF13360 PQQ_2: PQQ-like domai 84.3 25 0.00053 29.8 20.4 189 102-335 35-237 (238)
77 PF02897 Peptidase_S9_N: Proly 82.7 43 0.00092 31.5 21.8 159 150-335 237-411 (414)
78 KOG2437 Muskelin [Signal trans 82.0 3.6 7.8E-05 39.0 5.9 157 173-335 239-419 (723)
79 TIGR03300 assembly_YfgL outer 80.2 49 0.0011 30.6 19.5 74 162-254 250-327 (377)
80 COG1520 FOG: WD40-like repeat 78.9 54 0.0012 30.3 13.2 115 196-338 64-181 (370)
81 KOG2055 WD40 repeat protein [G 78.2 9 0.0002 35.9 7.0 61 263-335 234-295 (514)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.6 61 0.0013 31.8 12.9 118 194-335 63-196 (527)
83 KOG2437 Muskelin [Signal trans 75.6 5.4 0.00012 37.9 5.0 135 119-256 234-394 (723)
84 KOG4341 F-box protein containi 75.1 0.62 1.3E-05 43.0 -1.1 37 3-40 74-110 (483)
85 TIGR03866 PQQ_ABC_repeats PQQ- 72.4 65 0.0014 28.0 22.3 187 112-339 93-290 (300)
86 KOG0289 mRNA splicing factor [ 70.3 97 0.0021 29.1 17.6 117 196-338 354-472 (506)
87 PF13415 Kelch_3: Galactose ox 69.8 4.6 0.0001 25.0 2.3 19 162-180 18-36 (49)
88 PF13854 Kelch_5: Kelch motif 69.1 12 0.00027 22.2 4.0 35 192-226 6-41 (42)
89 TIGR03074 PQQ_membr_DH membran 68.6 1.4E+02 0.003 30.9 13.6 32 193-231 187-220 (764)
90 KOG0649 WD40 repeat protein [G 68.3 28 0.00062 30.0 7.2 71 264-339 81-155 (325)
91 cd01207 Ena-Vasp Enabled-VASP- 66.4 31 0.00067 25.9 6.4 43 114-159 9-51 (111)
92 TIGR02658 TTQ_MADH_Hv methylam 65.8 1.1E+02 0.0025 28.2 22.4 200 98-334 110-336 (352)
93 PF13570 PQQ_3: PQQ-like domai 65.6 11 0.00024 22.0 3.3 26 194-226 15-40 (40)
94 KOG4152 Host cell transcriptio 65.2 43 0.00094 32.2 8.4 167 162-339 56-248 (830)
95 KOG2055 WD40 repeat protein [G 64.7 1.3E+02 0.0028 28.5 13.5 111 197-335 265-381 (514)
96 PF07250 Glyoxal_oxid_N: Glyox 63.4 38 0.00082 29.4 7.4 90 218-319 47-138 (243)
97 PF03178 CPSF_A: CPSF A subuni 62.5 1.2E+02 0.0026 27.3 13.2 97 217-335 62-166 (321)
98 KOG2445 Nuclear pore complex c 61.7 1.2E+02 0.0027 27.2 11.6 103 245-352 122-235 (361)
99 KOG2321 WD40 repeat protein [G 61.7 76 0.0016 31.0 9.4 58 202-273 147-206 (703)
100 smart00564 PQQ beta-propeller 58.6 26 0.00056 19.1 3.9 25 197-228 3-27 (33)
101 KOG0294 WD40 repeat-containing 58.3 1.4E+02 0.0031 26.9 12.5 131 113-273 148-282 (362)
102 COG4946 Uncharacterized protei 57.6 1.8E+02 0.0039 27.9 18.7 48 217-273 382-430 (668)
103 PF03088 Str_synth: Strictosid 57.3 36 0.00077 24.4 5.2 15 321-335 38-52 (89)
104 KOG2315 Predicted translation 57.2 1.9E+02 0.0042 28.1 16.4 147 103-273 230-391 (566)
105 PF05096 Glu_cyclase_2: Glutam 57.0 1.4E+02 0.003 26.3 14.5 108 199-333 54-162 (264)
106 PLN02919 haloacid dehalogenase 56.9 2.9E+02 0.0062 30.0 24.8 215 99-332 631-892 (1057)
107 KOG0286 G-protein beta subunit 56.4 1.5E+02 0.0032 26.5 18.0 190 112-335 75-266 (343)
108 PRK04792 tolB translocation pr 54.3 2E+02 0.0044 27.5 20.5 186 113-335 241-432 (448)
109 PLN00181 protein SPA1-RELATED; 53.6 2.8E+02 0.006 28.8 24.8 184 111-330 552-740 (793)
110 PF12768 Rax2: Cortical protei 53.1 1.4E+02 0.0031 26.6 9.4 67 161-234 14-81 (281)
111 COG3386 Gluconolactonase [Carb 52.1 1.8E+02 0.004 26.3 12.7 111 201-335 37-158 (307)
112 KOG0639 Transducin-like enhanc 51.9 1E+02 0.0022 29.6 8.4 101 217-335 440-546 (705)
113 cd00216 PQQ_DH Dehydrogenases 51.5 2.2E+02 0.0048 27.6 11.4 112 194-334 55-189 (488)
114 PRK04043 tolB translocation pr 51.1 2.2E+02 0.0048 27.0 21.4 190 113-335 212-407 (419)
115 KOG1274 WD40 repeat protein [G 50.8 3.1E+02 0.0067 28.5 18.7 188 113-331 25-221 (933)
116 PF07569 Hira: TUP1-like enhan 50.8 1.3E+02 0.0029 25.6 8.6 77 243-335 18-102 (219)
117 PF01011 PQQ: PQQ enzyme repea 50.0 28 0.0006 20.1 3.1 27 312-339 3-29 (38)
118 KOG0295 WD40 repeat-containing 45.8 1.7E+02 0.0036 27.0 8.5 61 263-337 313-373 (406)
119 PF05935 Arylsulfotrans: Aryls 44.8 2.2E+02 0.0047 27.6 10.0 162 162-339 127-312 (477)
120 PRK04792 tolB translocation pr 44.7 2.9E+02 0.0063 26.4 21.0 144 162-335 241-389 (448)
121 KOG0321 WD40 repeat-containing 44.3 84 0.0018 31.1 6.8 53 217-274 74-132 (720)
122 PF13859 BNR_3: BNR repeat-lik 43.7 1.8E+02 0.0038 26.4 8.6 83 194-283 124-212 (310)
123 PRK11028 6-phosphogluconolacto 43.2 2.5E+02 0.0054 25.2 23.5 167 143-335 130-313 (330)
124 PF14870 PSII_BNR: Photosynthe 42.3 2.6E+02 0.0056 25.2 16.7 138 167-335 39-181 (302)
125 KOG2502 Tub family proteins [G 41.4 14 0.0003 33.5 1.2 36 2-38 46-89 (355)
126 PLN02772 guanylate kinase 40.9 2E+02 0.0044 27.0 8.7 83 241-333 28-113 (398)
127 PRK00178 tolB translocation pr 38.0 3.5E+02 0.0076 25.5 21.1 186 113-335 222-413 (430)
128 TIGR02800 propeller_TolB tol-p 37.1 3.5E+02 0.0075 25.2 20.6 186 113-335 169-361 (417)
129 PF13013 F-box-like_2: F-box-l 36.4 6.8 0.00015 29.3 -1.2 28 2-30 23-50 (109)
130 PRK13684 Ycf48-like protein; P 36.3 3.4E+02 0.0073 24.8 12.7 140 165-335 152-295 (334)
131 KOG1310 WD40 repeat protein [G 35.4 2.7E+02 0.0059 27.3 8.6 117 101-227 59-180 (758)
132 PF06433 Me-amine-dh_H: Methyl 34.2 3.7E+02 0.0081 24.7 19.8 106 115-236 18-139 (342)
133 KOG0647 mRNA export protein (c 33.8 2.5E+02 0.0055 25.2 7.6 63 263-339 49-112 (347)
134 PRK04043 tolB translocation pr 33.0 4.3E+02 0.0094 25.0 13.4 99 217-335 213-316 (419)
135 TIGR02276 beta_rpt_yvtn 40-res 33.0 99 0.0022 17.7 4.4 24 311-334 5-28 (42)
136 PRK03629 tolB translocation pr 31.7 4.5E+02 0.0098 24.9 22.2 186 113-335 178-370 (429)
137 COG2706 3-carboxymuconate cycl 30.8 4.3E+02 0.0092 24.3 22.5 166 145-335 151-330 (346)
138 PTZ00334 trans-sialidase; Prov 30.6 4.9E+02 0.011 27.0 10.1 80 197-283 267-349 (780)
139 PRK05137 tolB translocation pr 30.3 4.8E+02 0.01 24.7 23.3 185 113-335 181-373 (435)
140 PF14870 PSII_BNR: Photosynthe 30.2 4.1E+02 0.0089 24.0 14.4 155 165-350 124-285 (302)
141 PRK00178 tolB translocation pr 28.6 5E+02 0.011 24.4 21.7 185 115-335 180-370 (430)
142 PF10902 DUF2693: Protein of u 28.4 53 0.0011 23.2 2.2 18 321-339 50-67 (83)
143 KOG0279 G protein beta subunit 27.8 4.4E+02 0.0095 23.5 18.3 153 98-273 101-263 (315)
144 PF00568 WH1: WH1 domain; Int 27.0 2.1E+02 0.0046 21.2 5.5 38 114-158 16-54 (111)
145 PF06058 DCP1: Dcp1-like decap 26.9 91 0.002 23.8 3.5 26 312-339 22-47 (122)
146 PTZ00420 coronin; Provisional 26.4 6.6E+02 0.014 25.0 23.2 164 141-335 128-300 (568)
147 PLN02919 haloacid dehalogenase 26.3 8.7E+02 0.019 26.4 27.3 223 97-336 573-841 (1057)
148 COG4946 Uncharacterized protei 25.4 6.3E+02 0.014 24.5 15.9 146 161-335 285-438 (668)
149 PRK05137 tolB translocation pr 25.2 5.9E+02 0.013 24.1 22.0 187 112-335 224-419 (435)
150 PF02191 OLF: Olfactomedin-lik 24.7 3.2E+02 0.007 23.8 6.9 30 309-339 78-108 (250)
151 PF15408 PH_7: Pleckstrin homo 24.2 12 0.00025 26.4 -1.7 24 20-43 77-100 (104)
152 PF14339 DUF4394: Domain of un 23.8 2.6E+02 0.0057 24.1 6.0 55 101-157 36-92 (236)
153 TIGR03032 conserved hypothetic 23.7 3.6E+02 0.0078 24.6 6.9 56 189-254 201-258 (335)
154 KOG0292 Vesicle coat complex C 23.3 5.2E+02 0.011 27.2 8.6 74 262-347 226-299 (1202)
155 TIGR02800 propeller_TolB tol-p 23.2 6.1E+02 0.013 23.5 21.9 139 113-273 213-353 (417)
156 KOG0294 WD40 repeat-containing 23.0 5.8E+02 0.013 23.2 11.8 115 194-335 46-164 (362)
157 PF08268 FBA_3: F-box associat 23.0 3.4E+02 0.0073 20.5 7.7 89 162-253 19-118 (129)
158 KOG0265 U5 snRNP-specific prot 23.0 5.6E+02 0.012 23.1 8.1 69 247-334 58-126 (338)
159 KOG3926 F-box proteins [Amino 22.7 26 0.00057 30.6 -0.2 37 2-39 203-240 (332)
160 cd00837 EVH1 EVH1 (Enabled, Va 22.2 3.2E+02 0.007 20.0 6.1 39 114-158 9-47 (104)
161 PF01436 NHL: NHL repeat; Int 21.9 1.4E+02 0.0031 15.7 4.2 19 307-325 10-28 (28)
162 PF15232 DUF4585: Domain of un 21.8 2E+02 0.0042 19.8 3.8 12 167-178 33-44 (75)
163 PF14157 YmzC: YmzC-like prote 21.4 1.4E+02 0.0029 19.8 2.9 15 321-335 42-56 (63)
164 KOG0293 WD40 repeat-containing 21.0 4.3E+02 0.0093 25.0 7.0 21 247-273 406-426 (519)
165 KOG4190 Uncharacterized conser 20.5 2.4E+02 0.0052 27.6 5.5 101 115-228 805-909 (1034)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.9e-33 Score=243.65 Aligned_cols=216 Identities=25% Similarity=0.405 Sum_probs=162.6
Q ss_pred EEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCC--CCceEEEeEeCCCCCeEEEEEEc-----cceEEEEEEcC
Q 040165 99 IGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLG--SPYLYGFGYDSSTDDYKVLAVSC-----LRVLLKVFSMK 171 (358)
Q Consensus 99 ~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~--~~~~~~~~~d~~~~~ykvv~~~~-----~~~~~~vyss~ 171 (358)
++|||||||+. ....++||||+||+++.||+++.... ....++||||+.+++||||++.. ....++||+++
T Consensus 1 ~~sCnGLlc~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFS--YGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEe--cCCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 47999999997 34789999999999999998764311 11258899999999999999862 24689999999
Q ss_pred CCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCCCC---C-CceEEEEE
Q 040165 172 AFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEACH---P-RSVSLGVV 246 (358)
Q Consensus 172 t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~---~-~~~~l~~~ 246 (358)
+++||.+.. .+........+|++||.+||++...... ....|++||+.+|+|+ .+++|.. . ....|+++
T Consensus 79 ~~~Wr~~~~-----~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~ 152 (230)
T TIGR01640 79 SNSWRTIEC-----SPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINY 152 (230)
T ss_pred CCCcccccc-----CCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccccccceEEEEE
Confidence 999999875 2222112234999999999999764311 1138999999999999 5999942 1 35789999
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC--cceEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK--WREFIS 324 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~l~~ 324 (358)
+|+|+++.... ....++||+|++++. .+|+|.++|+............++++ .++|+|++.... ...+..
T Consensus 153 ~G~L~~v~~~~----~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~---~~~g~I~~~~~~~~~~~~~~ 224 (230)
T TIGR01640 153 KGKLAVLKQKK----DTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGF---TDKGEIVLCCEDENPFYIFY 224 (230)
T ss_pred CCEEEEEEecC----CCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEE---eeCCEEEEEeCCCCceEEEE
Confidence 99999998421 134699999998765 46999999996544332222557777 778998887764 224999
Q ss_pred EECCCC
Q 040165 325 CNLNER 330 (358)
Q Consensus 325 yd~~t~ 330 (358)
||++|+
T Consensus 225 y~~~~~ 230 (230)
T TIGR01640 225 YNVGEN 230 (230)
T ss_pred EeccCC
Confidence 999985
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.62 E-value=4.3e-14 Score=115.56 Aligned_cols=147 Identities=30% Similarity=0.501 Sum_probs=100.6
Q ss_pred eEEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCC--C-C-CceEEEEE-CCeeEEEeecccccCCCCcEEEE
Q 040165 196 GCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEAC--H-P-RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 196 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~--~-~-~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW 269 (358)
+|++||.+||++....... ...|++||+++|+| ..+++|. + . ....|++. +|+||++... .....++||
T Consensus 1 gV~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~----~~~~~~~IW 75 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC----DETSKIEIW 75 (164)
T ss_pred CEEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec----cCCccEEEE
Confidence 5899999999998864321 12799999999999 8899993 3 2 56777554 8899999731 234569999
Q ss_pred EEccCCC-CCceeEEEEeecCCccccCcee-eEEEEeeecCCCcEEEEEcCc------ceEEEEECCCCeEEEeeccc--
Q 040165 270 VMKQYGV-HSSWERLTKIDNDIMVRYHGSL-VTLCTATGTDGGDEIIMINKW------REFISCNLNERTLEEIYRPN-- 339 (358)
Q Consensus 270 ~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~------~~l~~yd~~t~~~~~v~~~~-- 339 (358)
+|++++. .++|+|..+|+........... .+..+ . ..++++++..... ..++.|+ +++..+++ ++.
T Consensus 76 vm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~-i-~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~-~~~~~ 151 (164)
T PF07734_consen 76 VMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFF-I-DEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEV-DIEDK 151 (164)
T ss_pred EEeeeccCcceEEEEEEEecCCCCCcccccccceEE-E-eCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEc-ccccC
Confidence 9997642 6899999999976654322111 12222 1 3345555543211 2488888 88888888 664
Q ss_pred -cccceeeeeeec
Q 040165 340 -FDWCETVSYTES 351 (358)
Q Consensus 340 -~~~~~~~~y~~s 351 (358)
..+..+..|+||
T Consensus 152 ~~~~~~~~~YvpS 164 (164)
T PF07734_consen 152 SSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCEEEECCC
Confidence 246667788887
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.61 E-value=1.3e-13 Score=124.11 Aligned_cols=312 Identities=14% Similarity=0.150 Sum_probs=163.0
Q ss_pred CCChHHHHHHHHhccCC-cccceeeeecccccccccCChHHHHHHHhhccCcCCCCCccceEEEeeeCCCcccccccCCc
Q 040165 2 WSIPKDILEAEILCRLP-IKSLLRFKCVSKEWHCLISDPKFALYRQKKQGEIDNNNTIHQRVLVLAISPDRLQSLHCLTR 80 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp-~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 80 (358)
++||+|||. .|..||| .-++.|||+|||+||+.+.... + ..+ ....|++++....+. ..+.....
T Consensus 5 s~Lp~dll~-~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~------~~~~~~~~~~~~~~~--~~~~~~~~ 70 (373)
T PLN03215 5 STLPEELLH-MIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNP------FRTRPLILFNPINPS--ETLTDDRS 70 (373)
T ss_pred hhCCHHHHH-HHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCC------cccccccccCcccCC--CCcccccc
Confidence 479999999 9999998 6699999999999999876321 0 000 001233333221100 00100000
Q ss_pred ceeecccCCCCCCCCCe----EEEeecceEEEEEe--CCceEEEEcccccceeccCCCCCCCCCC------ceEEE-eEe
Q 040165 81 CITELNFNFPFESIPNV----IIGSCNGLVCMALH--GCKDFFIYNPSTRAHKKLPDPDISLGSP------YLYGF-GYD 147 (358)
Q Consensus 81 ~~~~~~~~~p~~~~~~~----~~~s~~Gll~~~~~--~~~~~~V~NP~T~~~~~lP~~~~~~~~~------~~~~~-~~d 147 (358)
..... ...+.+...+ ..++..|+|.-... ..+.+.+.||+++....+|+........ ..+.+ +.+
T Consensus 71 ~~~~~--~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~ 148 (373)
T PLN03215 71 YISRP--GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWA 148 (373)
T ss_pred ccccc--cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecc
Confidence 00000 0000000001 11456788876521 3477889999999977777432221110 01111 110
Q ss_pred ------------------CCC-CCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEee
Q 040165 148 ------------------SST-DDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVS 208 (358)
Q Consensus 148 ------------------~~~-~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~ 208 (358)
... .+|-|+++. ........ ..++|..++. ... .....|+++|++|.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~-~~g~l~~w--~~~~Wt~l~~-----~~~---~~~DIi~~kGkfYAvD~ 217 (373)
T PLN03215 149 KRRETRPGYQRSALVKVKEGDNHRDGVLGIG-RDGKINYW--DGNVLKALKQ-----MGY---HFSDIIVHKGQTYALDS 217 (373)
T ss_pred cccccccceeEEEEEEeecCCCcceEEEEEe-ecCcEeee--cCCeeeEccC-----CCc---eeeEEEEECCEEEEEcC
Confidence 000 123333332 11111111 1467877653 211 23678999999999965
Q ss_pred cCCCCCCCcEEEEEECCCCeeEEecCC-----CCC---CceEEEEECCeeEEEeeccccc-----------CCCCcEEEE
Q 040165 209 GFHFGSQDPVIIAFDLAEEKFCRVGEA-----CHP---RSVSLGVVGGCLSLNVCCSNCV-----------DKTTDFELW 269 (358)
Q Consensus 209 ~~~~~~~~~~i~~fD~~~~~~~~i~~P-----~~~---~~~~l~~~~g~L~lv~~~~~~~-----------~~~~~~~vW 269 (358)
.+ .+.++|..- +-+.+..+ .++ ....|+++.|+|++|....... .....++||
T Consensus 218 ~G-------~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vf 289 (373)
T PLN03215 218 IG-------IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVY 289 (373)
T ss_pred CC-------eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEE
Confidence 54 577777432 22232221 111 3467999999999998632110 013579999
Q ss_pred EEccCCCCCceeEEEEeecCCcc-ccCceeeEEEE-eeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc--ccc-ce
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMV-RYHGSLVTLCT-ATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN--FDW-CE 344 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~~-~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~--~~~-~~ 344 (358)
.+|.. ..+|+++.++....+. +........+- ..+...+-||+..+.. ..+||++.++...+ -.. +.. -.
T Consensus 290 klD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~--~~v~~~~dg~~~~~-~~~~~~~~~~~ 364 (373)
T PLN03215 290 KFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTM--PKVFKLDNGNGSSI-ETTISESSQSS 364 (373)
T ss_pred EEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCc--ceEEECCCCCccce-EeecCccccch
Confidence 99863 3799999999865542 22211111111 1123323388886655 88999999996666 222 111 12
Q ss_pred eeeeeeccc
Q 040165 345 TVSYTESIL 353 (358)
Q Consensus 345 ~~~y~~sl~ 353 (358)
+-+|.+|++
T Consensus 365 ~~~~~~~~~ 373 (373)
T PLN03215 365 FEMFVPSFL 373 (373)
T ss_pred heeeccccC
Confidence 346666653
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.59 E-value=8.1e-14 Score=134.90 Aligned_cols=214 Identities=10% Similarity=0.071 Sum_probs=149.3
Q ss_pred EEEeecceEEEEEeC------CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEEE
Q 040165 98 IIGSCNGLVCMALHG------CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKVF 168 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~vy 168 (358)
.++..+|.|....+. .+++..+||.+.+|..+|++...+.. ++.....+.-.+++.. .....+|.|
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-----~~v~~l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-----FGVAVLDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-----ceeEEECCEEEEEeccccccccccEEEe
Confidence 677777777655322 24678999999999999999765332 2222222322223222 445689999
Q ss_pred EcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEEC
Q 040165 169 SMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVG 247 (358)
Q Consensus 169 ss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~ 247 (358)
++.+++|..+++ |+. .+....++.++|.||.+++..........+.+||+.+++|+.+ +++..+....+++.+
T Consensus 402 Dp~~~~W~~va~-----m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~ 475 (571)
T KOG4441|consen 402 DPVTNKWTPVAP-----MLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN 475 (571)
T ss_pred cCCCCcccccCC-----CCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEEC
Confidence 999999999987 665 3356788899999999998654332357999999999999998 444444567789999
Q ss_pred CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-----ceE
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW-----REF 322 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~l 322 (358)
|+||++++... .....+++.+..+. ..|+.+..|..... ..-++ ..++.+|+..+.. +++
T Consensus 476 ~~iYvvGG~~~-~~~~~~VE~ydp~~----~~W~~v~~m~~~rs-------~~g~~---~~~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 476 GKIYVVGGFDG-TSALSSVERYDPET----NQWTMVAPMTSPRS-------AVGVV---VLGGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred CEEEEECCccC-CCccceEEEEcCCC----CceeEcccCccccc-------cccEE---EECCEEEEEecccCcccccee
Confidence 99999998654 22244556565554 68999977766542 11111 2356677765432 279
Q ss_pred EEEECCCCeEEEeec
Q 040165 323 ISCNLNERTLEEIYR 337 (358)
Q Consensus 323 ~~yd~~t~~~~~v~~ 337 (358)
-.||+++++|+....
T Consensus 541 e~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 541 ECYDPETDTWTEVTE 555 (571)
T ss_pred EEcCCCCCceeeCCC
Confidence 999999999999955
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.58 E-value=1.3e-13 Score=133.96 Aligned_cols=215 Identities=9% Similarity=0.021 Sum_probs=139.2
Q ss_pred EEEeecceEEEEEeC------CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEEE
Q 040165 98 IIGSCNGLVCMALHG------CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKVF 168 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~vy 168 (358)
.++..+|.|.+..+. ...+..+||.+++|..+|+++.++.....+ .+ .+.-.|++.. .....+++|
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~---~g~IYviGG~~~~~~~~sve~Y 372 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VI---DDTIYAIGGQNGTNVERTIECY 372 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EE---CCEEEEECCcCCCCCCceEEEE
Confidence 556667776555221 245788999999999999987653321111 11 1222222221 123579999
Q ss_pred EcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCC-----------------CCCcEEEEEECCCCeeEE
Q 040165 169 SMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFG-----------------SQDPVIIAFDLAEEKFCR 231 (358)
Q Consensus 169 ss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----------------~~~~~i~~fD~~~~~~~~ 231 (358)
++.+++|..+++ ||... .....+.++|+||.+++..... .....+.+||+.+++|+.
T Consensus 373 dp~~~~W~~~~~-----mp~~r-~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 373 TMGDDKWKMLPD-----MPIAL-SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred ECCCCeEEECCC-----CCccc-ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 999999999887 77654 3466778999999998754210 013579999999999998
Q ss_pred e-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCC
Q 040165 232 V-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGG 310 (358)
Q Consensus 232 i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g 310 (358)
+ ++|..+....+++.+|+||++++..+.......++.+..+. +.+|+.+..|+.... ...+++ .+|
T Consensus 447 v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~---~~~W~~~~~m~~~r~------~~~~~~----~~~ 513 (557)
T PHA02713 447 LPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT---YNGWELITTTESRLS------ALHTIL----HDN 513 (557)
T ss_pred cCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC---CCCeeEccccCcccc------cceeEE----ECC
Confidence 8 44444445678899999999997432110112233333321 147999988876432 222333 267
Q ss_pred cEEEEEcCcc--eEEEEECCCCeEEEee
Q 040165 311 DEIIMINKWR--EFISCNLNERTLEEIY 336 (358)
Q Consensus 311 ~i~~~~~~~~--~l~~yd~~t~~~~~v~ 336 (358)
.||+.++..+ .+-.||++|++|+.++
T Consensus 514 ~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 514 TIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred EEEEEeeecceeehhhcCcccccccchh
Confidence 7888765332 5889999999999993
No 6
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.55 E-value=1.8e-13 Score=107.16 Aligned_cols=112 Identities=23% Similarity=0.362 Sum_probs=82.8
Q ss_pred eEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC--C--CCCceEEEEECCeeEEEeecccccCCCCcEEEEEE
Q 040165 196 GCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA--C--HPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVM 271 (358)
Q Consensus 196 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P--~--~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l 271 (358)
++++||.+||++.... .....|++||+++|+|+.|++| . ......|.+.+|+|+++..... .....++||+|
T Consensus 1 gicinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~--~~~~~~~iWvL 76 (129)
T PF08268_consen 1 GICINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQ--GEPDSIDIWVL 76 (129)
T ss_pred CEEECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCC--CCcceEEEEEe
Confidence 5799999999998721 2247999999999999999998 2 2267889999999999984321 11346999999
Q ss_pred ccCCCCCceeEEEEeecCCccc--cCceeeEEEEeeecCCCcEEEE
Q 040165 272 KQYGVHSSWERLTKIDNDIMVR--YHGSLVTLCTATGTDGGDEIIM 315 (358)
Q Consensus 272 ~~~~~~~~W~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~g~i~~~ 315 (358)
++++. ++|++...+-+..... ......+.++ .+.|+|++.
T Consensus 77 eD~~k-~~Wsk~~~~lp~~~~~~~~~~~~~~~g~---~~~Geiv~~ 118 (129)
T PF08268_consen 77 EDYEK-QEWSKKHIVLPPSWQHFVHDCDFSFVGV---TDTGEIVFA 118 (129)
T ss_pred ecccc-ceEEEEEEECChHHhcccCCcEEEEEEE---cCCCEEEEE
Confidence 98764 7999886643322211 1245777787 888998877
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.50 E-value=3.7e-12 Score=121.89 Aligned_cols=185 Identities=9% Similarity=-0.037 Sum_probs=126.2
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCC
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESP 193 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~ 193 (358)
..+..+||.+++|..+|+++.+......+ . ..+...+++.......++.|++.+++|..+++ ||... ..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~---~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-----l~~~r-~~ 355 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGV--P---ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-----LLKPR-CN 355 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEE--E---ECCEEEEECCcCCCCceEEEECCCCeEEECCC-----CCCCC-cc
Confidence 35677899999999999987654321111 1 12322233321233568999999999999987 76544 45
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEec-CCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEc
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-EACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMK 272 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~ 272 (358)
..++.++|.||.+++.... ...+.+||+.+++|+.++ +|........++.+|+|+++++ ..+++..+
T Consensus 356 ~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---------~~e~ydp~ 423 (480)
T PHA02790 356 PAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---------NAEFYCES 423 (480)
T ss_pred cEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---------ceEEecCC
Confidence 6778999999999986422 247889999999999984 4443334566789999999983 24555444
Q ss_pred cCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-----ceEEEEECCCCeEEEe
Q 040165 273 QYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW-----REFISCNLNERTLEEI 335 (358)
Q Consensus 273 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~l~~yd~~t~~~~~v 335 (358)
. ..|+.+..++.... ....++ .+|+||+.++.. ..+..||+++++|+..
T Consensus 424 ~----~~W~~~~~m~~~r~------~~~~~v----~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 424 S----NTWTLIDDPIYPRD------NPELII----VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred C----CcEeEcCCCCCCcc------ccEEEE----ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 3 68998877754321 222333 267788876531 2599999999999864
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.49 E-value=1.9e-12 Score=125.84 Aligned_cols=199 Identities=8% Similarity=0.017 Sum_probs=130.2
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE----ccceEEEEEEcCCCceEeccccccccccccc
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS----CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~----~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
.+..+||.+++|..++++|.+......+ .. .+.-.|++.. .....++.|++.++.|..++. |+...
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a--~l---~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-----m~~~R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASA--IV---DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-----MIKNR 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEE--EE---CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-----Ccchh
Confidence 4677899999999999887653221111 11 1222222211 113568999999999999887 76544
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccC--------
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVD-------- 261 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~-------- 261 (358)
.....+.++|+||.+++.... .....+.+||+.+++|+.+ ++|........++.+|+||+++|..+...
T Consensus 343 -~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 343 -CRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred -hceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccc
Confidence 456778999999999986422 1235799999999999998 55644445567788999999997542100
Q ss_pred ---------CCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc------ceEEEEE
Q 040165 262 ---------KTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW------REFISCN 326 (358)
Q Consensus 262 ---------~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~------~~l~~yd 326 (358)
....++.+..+. ..|+.+..|+.... ...+++ .+|+||+.++.. ..+..||
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~t----d~W~~v~~m~~~r~------~~~~~~----~~~~IYv~GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVN----NIWETLPNFWTGTI------RPGVVS----HKDDIYVVCDIKDEKNVKTCIFRYN 486 (557)
T ss_pred cccccccccccceEEEECCCC----CeEeecCCCCcccc------cCcEEE----ECCEEEEEeCCCCCCccceeEEEec
Confidence 012344443333 68998887765431 122232 367788876431 2478999
Q ss_pred CCC-CeEEEeeccc
Q 040165 327 LNE-RTLEEIYRPN 339 (358)
Q Consensus 327 ~~t-~~~~~v~~~~ 339 (358)
+++ ++|+.+..++
T Consensus 487 p~~~~~W~~~~~m~ 500 (557)
T PHA02713 487 TNTYNGWELITTTE 500 (557)
T ss_pred CCCCCCeeEccccC
Confidence 999 8999985554
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.47 E-value=6.2e-12 Score=122.62 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=128.9
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEEEEcCCCceEeccccccccccccc
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
..++.+||.|++|..+|+++.+......+ .. .+...|++.. .....+++|++.+++|+..+. +|...
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-----lp~~r 380 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVT--VF---NNRIYVIGGIYNSISLNTVESWKPGESKWREEPP-----LIFPR 380 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEE--EE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC-----cCcCC
Confidence 36789999999999999887553321111 11 1222222221 224578999999999999887 66544
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEE
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW 269 (358)
....++.++|.+|.+++..........+..||+.+++|+.+ ++|........+..+|+|++++|..........-.+|
T Consensus 381 -~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 381 -YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred -ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 45667889999999998543222235799999999999988 5564333445677899999999754211111112266
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-----ceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW-----REFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~l~~yd~~t~~~~~v 335 (358)
..+. ...+|+++..++.... ....++ .+|+|++.++.. +.+..||+++++|+.+
T Consensus 460 ~yd~--~~~~W~~~~~~~~~r~------~~~~~~----~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 460 SYNP--VTNKWTELSSLNFPRI------NASLCI----FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred EecC--CCCceeeCCCCCcccc------cceEEE----ECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 6665 2368998765543221 122233 256687766432 2599999999999988
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.46 E-value=2.7e-12 Score=124.42 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=142.1
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE------ccceEEEEEEcCCCceEecccccccccc
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS------CLRVLLKVFSMKAFSWRDVHYNLGVKLF 187 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~------~~~~~~~vyss~t~~W~~~~~~~~~~~~ 187 (358)
..+..+||.+++|..+.+++.++.....+.+. + +|..++ .....++.|++.+++|..+++ |.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-----~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~-----M~ 368 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-----G--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP-----MN 368 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEEC-----C--EEEEEccccCCCcccceEEEecCCCCceeccCC-----cc
Confidence 45668899999999999998664432111111 1 222221 234789999999999999887 65
Q ss_pred cccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEec-CCCCCCceEEEEECCeeEEEeecccccCCCCcE
Q 040165 188 YGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-EACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDF 266 (358)
Q Consensus 188 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~ 266 (358)
... ...+.+.++|.+|.+++.... .....+..||+.+++|..+. ++..+.....++.+|+||+++|..+......++
T Consensus 369 ~~R-~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sv 446 (571)
T KOG4441|consen 369 TKR-SDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSV 446 (571)
T ss_pred Ccc-ccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceE
Confidence 544 557888999999999987632 23458999999999999984 555445678889999999999865432224567
Q ss_pred EEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-----ceEEEEECCCCeEEEeeccc
Q 040165 267 ELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW-----REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 267 ~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~l~~yd~~t~~~~~v~~~~ 339 (358)
+.+.... +.|+.+..|+.... ...+++ .+|.||.+++.. .++-.||+++++|..+..+.
T Consensus 447 e~YDP~t----~~W~~~~~M~~~R~------~~g~a~----~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 447 ECYDPET----NTWTLIAPMNTRRS------GFGVAV----LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EEEcCCC----CceeecCCcccccc------cceEEE----ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 7776554 79999999987652 333444 367788876533 15899999999999995454
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.31 E-value=5.9e-10 Score=102.69 Aligned_cols=228 Identities=11% Similarity=0.038 Sum_probs=130.7
Q ss_pred EEEeecceEEEEEe-CCceEEEEc--ccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEc---------cceEE
Q 040165 98 IIGSCNGLVCMALH-GCKDFFIYN--PSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSC---------LRVLL 165 (358)
Q Consensus 98 ~~~s~~Gll~~~~~-~~~~~~V~N--P~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~---------~~~~~ 165 (358)
..+..++-|.+... ....++++| +.+++|..+|+++...+.... .... .+.-.|+.... ....+
T Consensus 12 ~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~-~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v 87 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAV-AAAI---DGKLYVFGGIGKANSEGSPQVFDDV 87 (346)
T ss_pred eEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccce-EEEE---CCEEEEEeCCCCCCCCCcceecccE
Confidence 33345555554412 235677777 478899999988732221111 1111 12222222111 12469
Q ss_pred EEEEcCCCceEecccccccccccccCCCCceE-EECceEEEEeecCCCC-------------------------------
Q 040165 166 KVFSMKAFSWRDVHYNLGVKLFYGTESPPKGC-LFNGALHWLVSGFHFG------------------------------- 213 (358)
Q Consensus 166 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~------------------------------- 213 (358)
+.|++.+++|+.++.. +|... ....++ .++|+||.+++.....
T Consensus 88 ~~Yd~~~~~W~~~~~~----~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 88 YRYDPKKNSWQKLDTR----SPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred EEEECCCCEEecCCCC----CCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 9999999999998631 33322 223333 6899999998754210
Q ss_pred --CCCcEEEEEECCCCeeEEe-cCCC-CCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecC
Q 040165 214 --SQDPVIIAFDLAEEKFCRV-GEAC-HPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDND 289 (358)
Q Consensus 214 --~~~~~i~~fD~~~~~~~~i-~~P~-~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~ 289 (358)
.....+.+||+.+++|+.+ ++|. ......++..+|+|+++++.... .....++|..+-......|+++..|+..
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~y~~~~~~~~W~~~~~m~~~ 240 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKP--GLRTAEVKQYLFTGGKLEWNKLPPLPPP 240 (346)
T ss_pred HcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCC--CccchheEEEEecCCCceeeecCCCCCC
Confidence 0025799999999999998 5564 23456678889999999975321 1223445544321123689988877643
Q ss_pred CccccCceeeEEEEeeecCCCcEEEEEcCc----------------------ceEEEEECCCCeEEEeeccc
Q 040165 290 IMVRYHGSLVTLCTATGTDGGDEIIMINKW----------------------REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~----------------------~~l~~yd~~t~~~~~v~~~~ 339 (358)
............++ ..+|+||+..... ..+..||+++++|+.+..++
T Consensus 241 r~~~~~~~~~~~a~---~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 241 KSSSQEGLAGAFAG---ISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred CCCccccccEEeee---EECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 21000000111122 2356687765421 13679999999999985444
No 12
>PLN02153 epithiospecifier protein
Probab=99.31 E-value=7.5e-10 Score=101.74 Aligned_cols=225 Identities=10% Similarity=0.034 Sum_probs=127.7
Q ss_pred EEEeecceEEEEEeC-------CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEE
Q 040165 98 IIGSCNGLVCMALHG-------CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKV 167 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~-------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~v 167 (358)
.++..++.|.+.... ...++++||.+++|..+++........ ..++......+...|+... .....+++
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 105 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRIS-CLGVRMVAVGTKLYIFGGRDEKREFSDFYS 105 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCc-cCceEEEEECCEEEEECCCCCCCccCcEEE
Confidence 344455665554221 146889999999999988654221110 0011111111222222211 12347899
Q ss_pred EEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCC-----CCCcEEEEEECCCCeeEEecCCC----CC
Q 040165 168 FSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFG-----SQDPVIIAFDLAEEKFCRVGEAC----HP 238 (358)
Q Consensus 168 yss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~----~~ 238 (358)
|++.+++|+.++...+...|... ..+.++..+|+||.+++..... .....+.+||+.+++|..++.+. .+
T Consensus 106 yd~~t~~W~~~~~~~~~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r 184 (341)
T PLN02153 106 YDTVKNEWTFLTKLDEEGGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR 184 (341)
T ss_pred EECCCCEEEEeccCCCCCCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC
Confidence 99999999988651000013222 3466778999999998864221 01236899999999999885431 22
Q ss_pred CceEEEEECCeeEEEeeccccc-------CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc
Q 040165 239 RSVSLGVVGGCLSLNVCCSNCV-------DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD 311 (358)
Q Consensus 239 ~~~~l~~~~g~L~lv~~~~~~~-------~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~ 311 (358)
....++..+|+|+++++..... .....++++.++. .+|+++.........+ .....++ .++.
T Consensus 185 ~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~----~~W~~~~~~g~~P~~r---~~~~~~~----~~~~ 253 (341)
T PLN02153 185 GGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPAS----GKWTEVETTGAKPSAR---SVFAHAV----VGKY 253 (341)
T ss_pred CcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCC----CcEEeccccCCCCCCc---ceeeeEE----ECCE
Confidence 3446677899999997642110 0123344444333 6899986543111111 1222222 2466
Q ss_pred EEEEEcCc--------------ceEEEEECCCCeEEEe
Q 040165 312 EIIMINKW--------------REFISCNLNERTLEEI 335 (358)
Q Consensus 312 i~~~~~~~--------------~~l~~yd~~t~~~~~v 335 (358)
||+..... ..++.||+++++|+++
T Consensus 254 iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 254 IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred EEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 77765531 1499999999999998
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.25 E-value=1.6e-09 Score=98.83 Aligned_cols=199 Identities=9% Similarity=-0.032 Sum_probs=118.6
Q ss_pred eEEEE-ccccc-ceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEEEEcCCCce----Eecccccccc
Q 040165 115 DFFIY-NPSTR-AHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKVFSMKAFSW----RDVHYNLGVK 185 (358)
Q Consensus 115 ~~~V~-NP~T~-~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~vyss~t~~W----~~~~~~~~~~ 185 (358)
.++++ +|..+ +|..++++|.+.... ..... .+...++... .....++.|+..+++| +.++.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~--~~~~~---~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~----- 109 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYG--ASVSV---ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGN----- 109 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccce--EEEEE---CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC-----
Confidence 45555 45433 799988777553221 11121 1222222211 2246789999999988 55555
Q ss_pred cccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEec-CCC-CCCceEEEEECCeeEEEeecccccCCC
Q 040165 186 LFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-EAC-HPRSVSLGVVGGCLSLNVCCSNCVDKT 263 (358)
Q Consensus 186 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~-~~~~~~l~~~~g~L~lv~~~~~~~~~~ 263 (358)
+|... ....++.++|+||.+++..... ....+.+||+.+++|+.++ +|. .+....++..+|+|+++++... .
T Consensus 110 lp~~~-~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~----~ 183 (323)
T TIGR03548 110 LPFTF-ENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSN----I 183 (323)
T ss_pred CCcCc-cCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCC----c
Confidence 55543 3466778999999998863221 2357999999999999984 663 3334456778999999997432 1
Q ss_pred CcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc------------------------
Q 040165 264 TDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW------------------------ 319 (358)
Q Consensus 264 ~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~------------------------ 319 (358)
...+++..+.. ..+|+++..+.....+.... ....++ ..++.||+.....
T Consensus 184 ~~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~-~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (323)
T TIGR03548 184 AYTDGYKYSPK--KNQWQKVADPTTDSEPISLL-GAASIK---INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKK 257 (323)
T ss_pred cccceEEEecC--CCeeEECCCCCCCCCceecc-ceeEEE---ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence 12344555542 26899877654221111100 111112 2245566654321
Q ss_pred -------------ceEEEEECCCCeEEEe
Q 040165 320 -------------REFISCNLNERTLEEI 335 (358)
Q Consensus 320 -------------~~l~~yd~~t~~~~~v 335 (358)
+.+..||+++++|+.+
T Consensus 258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 286 (323)
T TIGR03548 258 EYFLKPPEWYNWNRKILIYNVRTGKWKSI 286 (323)
T ss_pred HHhCCCccccCcCceEEEEECCCCeeeEc
Confidence 2499999999999998
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.22 E-value=4.5e-09 Score=97.84 Aligned_cols=228 Identities=10% Similarity=-0.024 Sum_probs=130.8
Q ss_pred EEEeecceEEEEEe-CCceEEEEccc--ccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEc---------cceEE
Q 040165 98 IIGSCNGLVCMALH-GCKDFFIYNPS--TRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSC---------LRVLL 165 (358)
Q Consensus 98 ~~~s~~Gll~~~~~-~~~~~~V~NP~--T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~---------~~~~~ 165 (358)
..+..++-|.+... ....++++|+. +++|..+|+++...+..... ... .+...|+.... ....+
T Consensus 33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~-v~~---~~~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVA-AFI---DGKLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceE-EEE---CCEEEEEcCCCCCCCCCceeEcccE
Confidence 44556666655422 23456777765 57899998776422221111 111 12222222211 12469
Q ss_pred EEEEcCCCceEecccccccccccccCCCCceEE-ECceEEEEeecCCCC-------------------------------
Q 040165 166 KVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCL-FNGALHWLVSGFHFG------------------------------- 213 (358)
Q Consensus 166 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~------------------------------- 213 (358)
+.|+..+++|+.++.. .|... ....++. .+|+||.+++.....
T Consensus 109 ~~YD~~~n~W~~~~~~----~p~~~-~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 109 YKYDPKTNSWQKLDTR----SPVGL-AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred EEEeCCCCEEEeCCCC----CCCcc-cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 9999999999998741 23322 2233344 799999999864210
Q ss_pred --CCCcEEEEEECCCCeeEEe-cCCC-CCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecC
Q 040165 214 --SQDPVIIAFDLAEEKFCRV-GEAC-HPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDND 289 (358)
Q Consensus 214 --~~~~~i~~fD~~~~~~~~i-~~P~-~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~ 289 (358)
.....+.+||+.+++|+.+ ++|. ......++..+++|+++++.... .....++|..+-+....+|+++..|+..
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~--~~~~~~~~~~~~~~~~~~W~~~~~~p~~ 261 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKP--GLRTDAVKQGKFTGNNLKWQKLPDLPPA 261 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECC--CcCChhheEEEecCCCcceeecCCCCCC
Confidence 0125799999999999988 4664 23445667789999999975321 1234556654322133689998877653
Q ss_pred Cccc-cCceeeEEEEeeecCCCcEEEEEcCc----------------------ceEEEEECCCCeEEEeeccc
Q 040165 290 IMVR-YHGSLVTLCTATGTDGGDEIIMINKW----------------------REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 290 ~~~~-~~~~~~~~~~~~~~~~g~i~~~~~~~----------------------~~l~~yd~~t~~~~~v~~~~ 339 (358)
.... ........++ ..+++||+..... ..+..||+++++|+++-.++
T Consensus 262 ~~~~~~~~~~~~~a~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 262 PGGSSQEGVAGAFAG---YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred CcCCcCCccceEece---eECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 2100 0011112122 2356677765421 02457999999999884343
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.21 E-value=4.1e-10 Score=109.90 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=121.2
Q ss_pred EEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE----ccceEEEEEEcCCCceEecccccccccccccC
Q 040165 116 FFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS----CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 116 ~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~----~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
+.-+|+.+++|..+++.+.... +. +.. ..+...|++.. .....+..|++.+++|..++. ++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~---~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-----~~~~R- 333 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHYVYC--FG-SVV---LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE-----LIYPR- 333 (534)
T ss_pred eeecchhhhhcccccCcccccc--ce-EEE---ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC-----CCccc-
Confidence 4456888999998876653211 11 111 11211122211 122468999999999998877 65443
Q ss_pred CCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEE
Q 040165 192 SPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWV 270 (358)
Q Consensus 192 ~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~ 270 (358)
.....+.++|.+|.+++.... .....+..||+.+.+|+.+ ++|..+.....+..+|+|++++|..........+++|.
T Consensus 334 ~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 334 KNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred ccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 446778899999999986522 1235789999999999987 55644444556778999999997432111123444444
Q ss_pred EccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc--------ceEEEEECCCCeEEEe
Q 040165 271 MKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW--------REFISCNLNERTLEEI 335 (358)
Q Consensus 271 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--------~~l~~yd~~t~~~~~v 335 (358)
.+. .+|+++..++.... .... + ..++.||+.++.. ..++.||+++++|+++
T Consensus 413 ~~t----~~W~~~~~~p~~r~------~~~~-~---~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 413 LNT----NKWSKGSPLPISHY------GGCA-I---YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL 471 (534)
T ss_pred CCC----CeeeecCCCCcccc------CceE-E---EECCEEEEECCccCCCCCcccceEEEecCCCCceeeC
Confidence 433 68998766553321 1122 2 2356677765421 2499999999999998
No 16
>PLN02193 nitrile-specifier protein
Probab=99.18 E-value=7.9e-09 Score=98.84 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=121.2
Q ss_pred eEEEEcccccceeccCCCCC-CCCCCc-eEEEeEeCCCCCeEEEEEE---ccceEEEEEEcCCCceEecccccccccccc
Q 040165 115 DFFIYNPSTRAHKKLPDPDI-SLGSPY-LYGFGYDSSTDDYKVLAVS---CLRVLLKVFSMKAFSWRDVHYNLGVKLFYG 189 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~-~~~~~~-~~~~~~d~~~~~ykvv~~~---~~~~~~~vyss~t~~W~~~~~~~~~~~~~~ 189 (358)
.++++||.+.+|..+|.... +..... .....++ +...|+... .....+++|++.+++|+.+..... .|..
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~---~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~--~P~~ 268 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG---STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE--GPTP 268 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC---CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC--CCCC
Confidence 58899999999998875421 111111 1111111 211222111 123579999999999999876100 1322
Q ss_pred cCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC----CCCCceEEEEECCeeEEEeecccccCCCCc
Q 040165 190 TESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA----CHPRSVSLGVVGGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 190 ~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P----~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~ 265 (358)
. ..+..+.++++||.+++..... ....+.+||+.+++|+.++.| ..+....++..+|+++++.+.... ..
T Consensus 269 R-~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~-- 342 (470)
T PLN02193 269 R-SFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EV-- 342 (470)
T ss_pred c-cceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--cc--
Confidence 2 3456678999999998864321 134689999999999998654 122345667789999999874321 12
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc--------------ceEEEEECCCCe
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW--------------REFISCNLNERT 331 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--------------~~l~~yd~~t~~ 331 (358)
-++|+++.. ..+|+++..+...+..+ .....++ .+++|++..... ..++.||+.|++
T Consensus 343 ~dv~~yD~~--t~~W~~~~~~g~~P~~R---~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 343 DDVHYYDPV--QDKWTQVETFGVRPSER---SVFASAA----VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred CceEEEECC--CCEEEEeccCCCCCCCc---ceeEEEE----ECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 345666542 26899987653221111 1222222 245677765421 148999999999
Q ss_pred EEEe
Q 040165 332 LEEI 335 (358)
Q Consensus 332 ~~~v 335 (358)
|+++
T Consensus 414 W~~~ 417 (470)
T PLN02193 414 WERL 417 (470)
T ss_pred EEEc
Confidence 9998
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.13 E-value=2e-09 Score=103.24 Aligned_cols=148 Identities=8% Similarity=-0.054 Sum_probs=106.8
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCc
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRS 240 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~ 240 (358)
...++.|++.+++|..+++ |+... .....+.++|.+|.+++... ...+..||+.+++|..+ ++|.....
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~-----m~~~r-~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~~~~~l~~~r~~ 355 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPP-----MNSPR-LYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWVNMPSLLKPRCN 355 (480)
T ss_pred CCeEEEEECCCCEEEECCC-----CCchh-hcceEEEECCEEEEECCcCC----CCceEEEECCCCeEEECCCCCCCCcc
Confidence 3568899999999999987 66543 34667789999999998642 24689999999999988 55544445
Q ss_pred eEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcc
Q 040165 241 VSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWR 320 (358)
Q Consensus 241 ~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 320 (358)
...++.+|+||+++|... ....++.|..+. ..|+.+..++.... ...++ ..+|.||+.++ .
T Consensus 356 ~~~~~~~g~IYviGG~~~---~~~~ve~ydp~~----~~W~~~~~m~~~r~-------~~~~~---~~~~~IYv~GG-~- 416 (480)
T PHA02790 356 PAVASINNVIYVIGGHSE---TDTTTEYLLPNH----DQWQFGPSTYYPHY-------KSCAL---VFGRRLFLVGR-N- 416 (480)
T ss_pred cEEEEECCEEEEecCcCC---CCccEEEEeCCC----CEEEeCCCCCCccc-------cceEE---EECCEEEEECC-c-
Confidence 677889999999997532 234567775543 68998776664431 22222 23677888764 2
Q ss_pred eEEEEECCCCeEEEeeccc
Q 040165 321 EFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v~~~~ 339 (358)
...||+++++|+.+..+.
T Consensus 417 -~e~ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 417 -AEFYCESSNTWTLIDDPI 434 (480)
T ss_pred -eEEecCCCCcEeEcCCCC
Confidence 678999999999985444
No 18
>PLN02153 epithiospecifier protein
Probab=99.08 E-value=3.7e-08 Score=90.52 Aligned_cols=180 Identities=12% Similarity=0.067 Sum_probs=107.2
Q ss_pred EEEeecceEEEEEe-----CCceEEEEcccccceeccCCCCC---CCCCCceEEEeEeCCCCCeEEEEEEc---------
Q 040165 98 IIGSCNGLVCMALH-----GCKDFFIYNPSTRAHKKLPDPDI---SLGSPYLYGFGYDSSTDDYKVLAVSC--------- 160 (358)
Q Consensus 98 ~~~s~~Gll~~~~~-----~~~~~~V~NP~T~~~~~lP~~~~---~~~~~~~~~~~~d~~~~~ykvv~~~~--------- 160 (358)
.+++.+|.|.+... ....++++||.|.+|..+++++. +..+. ...+.. ..+...|+....
T Consensus 80 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~-~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART-FHSMAS--DENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred EEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce-eeEEEE--ECCEEEEECCccCCCccCCCc
Confidence 45566676655522 12468899999999999886521 11111 111111 112222222211
Q ss_pred cceEEEEEEcCCCceEeccccccccccc--ccCCCCceEEECceEEEEeecCCC-------CCCCcEEEEEECCCCeeEE
Q 040165 161 LRVLLKVFSMKAFSWRDVHYNLGVKLFY--GTESPPKGCLFNGALHWLVSGFHF-------GSQDPVIIAFDLAEEKFCR 231 (358)
Q Consensus 161 ~~~~~~vyss~t~~W~~~~~~~~~~~~~--~~~~~~~~v~~~G~lywl~~~~~~-------~~~~~~i~~fD~~~~~~~~ 231 (358)
....+++|+.++++|+.++. +.. ..+.....+.++|++|.+++.... ......+.+||+.+.+|+.
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~-----~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPD-----PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred ccceEEEEECCCCeEeeCCC-----CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 12368999999999998875 221 122335567899999999764311 0112479999999999998
Q ss_pred ec----CCCCCCceEEEEECCeeEEEeecccc----cC-C-CCcEEEEEEccCCCCCceeEEEEee
Q 040165 232 VG----EACHPRSVSLGVVGGCLSLNVCCSNC----VD-K-TTDFELWVMKQYGVHSSWERLTKID 287 (358)
Q Consensus 232 i~----~P~~~~~~~l~~~~g~L~lv~~~~~~----~~-~-~~~~~vW~l~~~~~~~~W~~~~~i~ 287 (358)
++ .|..+.....+..+++|+++++.... .. . ...-++|.++.. ..+|+++....
T Consensus 232 ~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~~~ 295 (341)
T PLN02153 232 VETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGECG 295 (341)
T ss_pred ccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccCCC
Confidence 84 34333445667789999999975210 00 1 112268888762 36899886543
No 19
>PLN02193 nitrile-specifier protein
Probab=99.02 E-value=5.3e-08 Score=93.18 Aligned_cols=158 Identities=9% Similarity=-0.040 Sum_probs=97.5
Q ss_pred eEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEec-C---CCCC
Q 040165 163 VLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-E---ACHP 238 (358)
Q Consensus 163 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~---P~~~ 238 (358)
..+++|+.++++|+.++... .+|...+.....+.++++||.+++..... ....+.+||+.+++|+.+. + |..+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g--~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R 269 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATG--DVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPR 269 (470)
T ss_pred CcEEEEECCCCEEEeCCCCC--CCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCc
Confidence 45899999999999765410 02221122355678999999998864321 2347899999999999983 3 3223
Q ss_pred CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC
Q 040165 239 RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK 318 (358)
Q Consensus 239 ~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 318 (358)
....++..+++|+++++.... ..... ++.++.. ..+|+.+........ .+....+++ .+++|++....
T Consensus 270 ~~h~~~~~~~~iYv~GG~~~~-~~~~~--~~~yd~~--t~~W~~~~~~~~~~~---~R~~~~~~~----~~gkiyviGG~ 337 (470)
T PLN02193 270 SFHSMAADEENVYVFGGVSAT-ARLKT--LDSYNIV--DKKWFHCSTPGDSFS---IRGGAGLEV----VQGKVWVVYGF 337 (470)
T ss_pred cceEEEEECCEEEEECCCCCC-CCcce--EEEEECC--CCEEEeCCCCCCCCC---CCCCcEEEE----ECCcEEEEECC
Confidence 345566789999999975421 11233 4444431 268987643211111 111222333 25667766532
Q ss_pred c----ceEEEEECCCCeEEEe
Q 040165 319 W----REFISCNLNERTLEEI 335 (358)
Q Consensus 319 ~----~~l~~yd~~t~~~~~v 335 (358)
. ..++.||+++++|+++
T Consensus 338 ~g~~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 338 NGCEVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred CCCccCceEEEECCCCEEEEe
Confidence 1 2499999999999998
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.94 E-value=2.4e-07 Score=86.28 Aligned_cols=153 Identities=8% Similarity=0.086 Sum_probs=97.0
Q ss_pred eEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCC--CCcEEEEEECCCCeeEEe-cCCCCC-
Q 040165 163 VLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGS--QDPVIIAFDLAEEKFCRV-GEACHP- 238 (358)
Q Consensus 163 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~~i~~fD~~~~~~~~i-~~P~~~- 238 (358)
..+++|++.+++|+.++. +|.........+.++|+||.+++...... .......||+.+.+|+.+ ++|..+
T Consensus 189 ~~v~~YD~~t~~W~~~~~-----~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 263 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGE-----SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG 263 (376)
T ss_pred ceEEEEECCCCeeeECCc-----CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence 579999999999999886 66433344667788999999998532211 123455678899999987 555211
Q ss_pred -----C--ceEEEEECCeeEEEeecccccC----------------CCCcEEEEEEccCCCCCceeEEEEeecCCccccC
Q 040165 239 -----R--SVSLGVVGGCLSLNVCCSNCVD----------------KTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYH 295 (358)
Q Consensus 239 -----~--~~~l~~~~g~L~lv~~~~~~~~----------------~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~ 295 (358)
. ....+..+|+|+++++...... .....+++..+. ..|+++..++....
T Consensus 264 ~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~r~---- 335 (376)
T PRK14131 264 GSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN----GKWQKVGELPQGLA---- 335 (376)
T ss_pred CCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC----CcccccCcCCCCcc----
Confidence 1 1224668999999997542100 001345565554 68998876654321
Q ss_pred ceeeEEEEeeecCCCcEEEEEcCc------ceEEEEECCCCeEEE
Q 040165 296 GSLVTLCTATGTDGGDEIIMINKW------REFISCNLNERTLEE 334 (358)
Q Consensus 296 ~~~~~~~~~~~~~~g~i~~~~~~~------~~l~~yd~~t~~~~~ 334 (358)
.. .++ .-++.||+..+.. ..++.|+++++++..
T Consensus 336 --~~-~av---~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 336 --YG-VSV---SWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred --ce-EEE---EeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 22 233 3357788876532 168999999888765
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.92 E-value=3e-07 Score=84.77 Aligned_cols=137 Identities=8% Similarity=0.078 Sum_probs=87.0
Q ss_pred eEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEE--CCCCeeEEe-cCCCCC-
Q 040165 163 VLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFD--LAEEKFCRV-GEACHP- 238 (358)
Q Consensus 163 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD--~~~~~~~~i-~~P~~~- 238 (358)
..+++|++.+++|+.++. +|.........+.++|+||.+++..........+..|| +.+++|+.+ ++|..+
T Consensus 168 ~~v~~YDp~t~~W~~~~~-----~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~ 242 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGE-----NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS 242 (346)
T ss_pred ceEEEEECCCCceeECcc-----CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC
Confidence 579999999999999987 66433344666788999999998643221112344454 567799887 555321
Q ss_pred ------CceEEEEECCeeEEEeeccccc----------------CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCc
Q 040165 239 ------RSVSLGVVGGCLSLNVCCSNCV----------------DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHG 296 (358)
Q Consensus 239 ------~~~~l~~~~g~L~lv~~~~~~~----------------~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 296 (358)
.....++.+|+|+++++..... ......++|..+. .+|+++..++...
T Consensus 243 ~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~~------ 312 (346)
T TIGR03547 243 SSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN----GKWSKVGKLPQGL------ 312 (346)
T ss_pred CccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC----CcccccCCCCCCc------
Confidence 1223567899999999753100 0012567887764 5899988776432
Q ss_pred eeeEEEEeeecCCCcEEEEEcC
Q 040165 297 SLVTLCTATGTDGGDEIIMINK 318 (358)
Q Consensus 297 ~~~~~~~~~~~~~g~i~~~~~~ 318 (358)
....++ ..++.|++....
T Consensus 313 -~~~~~~---~~~~~iyv~GG~ 330 (346)
T TIGR03547 313 -AYGVSV---SWNNGVLLIGGE 330 (346)
T ss_pred -eeeEEE---EcCCEEEEEecc
Confidence 122233 346778887654
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.85 E-value=4.1e-07 Score=83.01 Aligned_cols=132 Identities=7% Similarity=0.006 Sum_probs=84.6
Q ss_pred ceEEEEcccccce----eccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEEEEcCCCceEeccccccccc
Q 040165 114 KDFFIYNPSTRAH----KKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKVFSMKAFSWRDVHYNLGVKL 186 (358)
Q Consensus 114 ~~~~V~NP~T~~~----~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~vyss~t~~W~~~~~~~~~~~ 186 (358)
..++.+|+.+++| ..+|++|.+....... .+ .+...|+... .....+++|++.+++|+.++. +
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~--~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-----~ 157 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSAC--YK---DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-----F 157 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEE--EE---CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-----C
Confidence 4678889999987 6788777554322111 11 1222222211 124579999999999999876 5
Q ss_pred ccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecC-CC---C--C-CceEEEEECCeeEEEeecc
Q 040165 187 FYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGE-AC---H--P-RSVSLGVVGGCLSLNVCCS 257 (358)
Q Consensus 187 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~-P~---~--~-~~~~l~~~~g~L~lv~~~~ 257 (358)
|...+.....+.++|+||.+++..... ...+.+||+.+++|+.++. +. . . ....++..+++|+++++..
T Consensus 158 p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 158 PGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 533334455678999999999864221 2347899999999999843 21 1 1 2233455689999998754
No 23
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.82 E-value=6.2e-10 Score=70.40 Aligned_cols=42 Identities=31% Similarity=0.536 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHhccCCcccceeeeecccccccccCChHHHH
Q 040165 1 MWSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFAL 43 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 43 (358)
|..||+|++. +||+.||++++.++..|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~-~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILL-EIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHH-HHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 6789999999 99999999999999999999999998875433
No 24
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.65 E-value=2.3e-09 Score=68.23 Aligned_cols=43 Identities=40% Similarity=0.639 Sum_probs=36.9
Q ss_pred CCChHHHHHHHHhccCCcccceeeeecccccccccCChHHHHHH
Q 040165 2 WSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFALYR 45 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~ 45 (358)
..||+|++. +||.+|+.+++++++.|||+|++++.++.+...+
T Consensus 4 ~~LP~~il~-~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQ-EILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHH-HHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHH-HHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 469999999 9999999999999999999999999999887654
No 25
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.52 E-value=1.1e-08 Score=62.59 Aligned_cols=39 Identities=49% Similarity=0.891 Sum_probs=36.5
Q ss_pred ChHHHHHHHHhccCCcccceeeeecccccccccCChHHHH
Q 040165 4 IPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFAL 43 (358)
Q Consensus 4 LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 43 (358)
||+|++. +||.+|+.+++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~-~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILE-EILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 7999999 99999999999999999999999999887643
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.42 E-value=7.3e-06 Score=69.42 Aligned_cols=213 Identities=13% Similarity=0.085 Sum_probs=121.0
Q ss_pred CCceEEEEcccccceeccCCCCCCCC--CCc-eE-EEeEeCCCCCe--EE-EEEE-----ccceEEEEEEcCCCceEecc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLG--SPY-LY-GFGYDSSTDDY--KV-LAVS-----CLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~--~~~-~~-~~~~d~~~~~y--kv-v~~~-----~~~~~~~vyss~t~~W~~~~ 179 (358)
+.-++.|.|-.+-+|.++|+--.+.. ..+ .+ ..-|-...-.| |+ ++.. .-+....-|+++++.|+...
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccc
Confidence 45678899999999999998321110 000 00 00010110001 11 1111 23567889999999998754
Q ss_pred cccccccccccCCCCceEEECceEEEEeecCCC-CCCCcEEEEEECCCCeeEEecC---C-CCCCceEEEEECCeeEEEe
Q 040165 180 YNLGVKLFYGTESPPKGCLFNGALHWLVSGFHF-GSQDPVIIAFDLAEEKFCRVGE---A-CHPRSVSLGVVGGCLSLNV 254 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~~i~~fD~~~~~~~~i~~---P-~~~~~~~l~~~~g~L~lv~ 254 (358)
-. + .+|.. +..+.++.++..+|..++..+. .....-+-++|+.+.+|+.+.. | --+......+.+|..++++
T Consensus 122 v~-G-~vPga-RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFG 198 (392)
T KOG4693|consen 122 VE-G-FVPGA-RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFG 198 (392)
T ss_pred ee-e-ecCCc-cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEec
Confidence 31 0 13322 2457788899999999876432 1122367899999999999832 3 1111233455689999998
Q ss_pred ecccccCC--------CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-------
Q 040165 255 CCSNCVDK--------TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW------- 319 (358)
Q Consensus 255 ~~~~~~~~--------~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~------- 319 (358)
+....... -.++....+.. +.|.+-..-.. .+.-.+..+..+ .+|++++.....
T Consensus 199 GR~D~~gpfHs~~e~Yc~~i~~ld~~T----~aW~r~p~~~~--~P~GRRSHS~fv-----Yng~~Y~FGGYng~ln~Hf 267 (392)
T KOG4693|consen 199 GRSDESGPFHSIHEQYCDTIMALDLAT----GAWTRTPENTM--KPGGRRSHSTFV-----YNGKMYMFGGYNGTLNVHF 267 (392)
T ss_pred cccccCCCccchhhhhcceeEEEeccc----cccccCCCCCc--CCCcccccceEE-----EcceEEEecccchhhhhhh
Confidence 76432211 13444444443 68977522221 222112223333 377777765321
Q ss_pred ceEEEEECCCCeEEEeeccc
Q 040165 320 REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 320 ~~l~~yd~~t~~~~~v~~~~ 339 (358)
..++.||++|.+|..| ..+
T Consensus 268 ndLy~FdP~t~~W~~I-~~~ 286 (392)
T KOG4693|consen 268 NDLYCFDPKTSMWSVI-SVR 286 (392)
T ss_pred cceeecccccchheee-ecc
Confidence 2599999999999999 776
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.15 E-value=7.6e-05 Score=63.38 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=112.6
Q ss_pred CceEEEEcccccceeccCCC---CCCCCCCceEEEeEeCCCCCeEEEEEE-----ccceEEEEEEcCCCceEeccccccc
Q 040165 113 CKDFFIYNPSTRAHKKLPDP---DISLGSPYLYGFGYDSSTDDYKVLAVS-----CLRVLLKVFSMKAFSWRDVHYNLGV 184 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~---~~~~~~~~~~~~~~d~~~~~ykvv~~~-----~~~~~~~vyss~t~~W~~~~~~~~~ 184 (358)
++.++-++|-|.+|.+.-.. |..+....++..| +...|+... .....+.+++..|-+||.+...
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk--- 175 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK--- 175 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChHHHHHhhhccceeEeccceeeeehhcc---
Confidence 34577889999999874211 1111111122222 222232221 3356788888899999998762
Q ss_pred ccccccCCCCceEEECceEEEEeecCCCC--------CCCcEEEEEECCCCeeEEec-C---CCCCCceEEEEECCeeEE
Q 040165 185 KLFYGTESPPKGCLFNGALHWLVSGFHFG--------SQDPVIIAFDLAEEKFCRVG-E---ACHPRSVSLGVVGGCLSL 252 (358)
Q Consensus 185 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~--------~~~~~i~~fD~~~~~~~~i~-~---P~~~~~~~l~~~~g~L~l 252 (358)
..|...+..+.++.++|.+|..++.++.. ..-+.|+++|+.++.|...+ - |..+......+.+|++++
T Consensus 176 g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~ 255 (392)
T KOG4693|consen 176 GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYM 255 (392)
T ss_pred CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEE
Confidence 12222223477788899999999876542 12368999999999998762 2 223355667888999999
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW 319 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 319 (358)
+++-... .+..--++|..+. ...-|.++..-.-....+ .+-.++ ..++++++.....
T Consensus 256 FGGYng~-ln~HfndLy~FdP--~t~~W~~I~~~Gk~P~aR----RRqC~~---v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 256 FGGYNGT-LNVHFNDLYCFDP--KTSMWSVISVRGKYPSAR----RRQCSV---VSGGKVYLFGGTS 312 (392)
T ss_pred ecccchh-hhhhhcceeeccc--ccchheeeeccCCCCCcc----cceeEE---EECCEEEEecCCC
Confidence 9965432 2334557788876 336898765433222111 222333 2357788766543
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.12 E-value=0.00012 Score=65.95 Aligned_cols=211 Identities=14% Similarity=0.093 Sum_probs=128.6
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE----------ccceEEEEEEcCCCceEecccccc
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS----------CLRVLLKVFSMKAFSWRDVHYNLG 183 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~----------~~~~~~~vyss~t~~W~~~~~~~~ 183 (358)
+.+|++|--+.+|+.+-.+..+..+. ...++..++. +--+... ......++|+..+++|..+...
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs-shq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-- 172 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS-SHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-- 172 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc-cceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC--
Confidence 46899999999998874333222222 1222223332 1111111 2356799999999999998751
Q ss_pred cccccccCCCCceEEECceEEEEeecCCCC---CCCcEEEEEECCCCeeEEecCC----CCCCceEEEEE-CCeeEEEee
Q 040165 184 VKLFYGTESPPKGCLFNGALHWLVSGFHFG---SQDPVIIAFDLAEEKFCRVGEA----CHPRSVSLGVV-GGCLSLNVC 255 (358)
Q Consensus 184 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~~~i~~fD~~~~~~~~i~~P----~~~~~~~l~~~-~g~L~lv~~ 255 (358)
.-|.+ +..+..|...-.|...++..+.. ..-.-+.+||+.+=+|+.+..+ ..+..+.+.+. +|.++|.++
T Consensus 173 -g~PS~-RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 173 -GGPSP-RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred -CCCCC-CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 01222 24466677777776666654321 1124689999999999999666 12244556666 999999886
Q ss_pred ccccc-----C-CCCcEEEEEEccC---CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEE--c------
Q 040165 256 CSNCV-----D-KTTDFELWVMKQY---GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMI--N------ 317 (358)
Q Consensus 256 ~~~~~-----~-~~~~~~vW~l~~~---~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~--~------ 317 (358)
-.... + ....-+.|.|+.. +.+-.|+++..+.+++-++. ...+++ +++++ ++|-. +
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs---gfsv~v---a~n~kal~FGGV~D~eeeeE 324 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS---GFSVAV---AKNHKALFFGGVCDLEEEEE 324 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC---ceeEEE---ecCCceEEecceecccccch
Confidence 43211 1 1456678998643 22368888887776654432 333444 55655 44421 0
Q ss_pred ------CcceEEEEECCCCeEEEeeccc
Q 040165 318 ------KWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 318 ------~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
.. .||.||+..++|.+. +++
T Consensus 325 sl~g~F~N-DLy~fdlt~nrW~~~-qlq 350 (521)
T KOG1230|consen 325 SLSGEFFN-DLYFFDLTRNRWSEG-QLQ 350 (521)
T ss_pred hhhhhhhh-hhhheecccchhhHh-hhc
Confidence 12 499999999999887 666
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.78 E-value=0.00053 Score=60.39 Aligned_cols=44 Identities=32% Similarity=0.394 Sum_probs=39.1
Q ss_pred CCCCh----HHHHHHHHhccCCcccceeeeecccccccccCChHHHHHH
Q 040165 1 MWSIP----KDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFALYR 45 (358)
Q Consensus 1 ~~~LP----~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~ 45 (358)
|..|| +++.+ .||+-|...+|+.|..|||+|+.+++++..-+..
T Consensus 75 i~~lP~~gl~hi~e-~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAE-NILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHH-HHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 35689 99999 9999999999999999999999999999765443
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.76 E-value=0.001 Score=63.97 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=104.9
Q ss_pred EEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecC----CCCCC
Q 040165 164 LLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGE----ACHPR 239 (358)
Q Consensus 164 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~----P~~~~ 239 (358)
.+.+++.++..|...... + ..|. .+..+..+.++..||.+++..........+-+||+.+.+|..+.. |..+.
T Consensus 89 dl~~~d~~~~~w~~~~~~-g-~~p~-~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~ 165 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAAT-G-DEPS-PRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA 165 (482)
T ss_pred eeEEeecCCccccccccc-C-CCCC-cccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc
Confidence 488888888889665431 0 1221 224577788999999999876433334689999999999998732 32335
Q ss_pred ceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc
Q 040165 240 SVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW 319 (358)
Q Consensus 240 ~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~ 319 (358)
...++..+.+|+++++.... ....-.+|+++-. ...|.++........++. ...+++ . +++++++.+..
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~---gH~~~~---~-~~~~~v~gG~~ 234 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLE--TSTWSELDTQGEAPSPRY---GHAMVV---V-GNKLLVFGGGD 234 (482)
T ss_pred cceEEEECCEEEEECCccCc--ccceeeeeeeccc--cccceecccCCCCCCCCC---CceEEE---E-CCeEEEEeccc
Confidence 56777888999999986532 1256677887753 257999988877654332 233333 2 34444433222
Q ss_pred ------ceEEEEECCCCeEEEe
Q 040165 320 ------REFISCNLNERTLEEI 335 (358)
Q Consensus 320 ------~~l~~yd~~t~~~~~v 335 (358)
..++.+|+.+.+|+++
T Consensus 235 ~~~~~l~D~~~ldl~~~~W~~~ 256 (482)
T KOG0379|consen 235 DGDVYLNDVHILDLSTWEWKLL 256 (482)
T ss_pred cCCceecceEeeecccceeeec
Confidence 1599999999999976
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.53 E-value=0.012 Score=56.68 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=120.5
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-----ccceEEEEEEcCCCceEecccccccccccc
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-----CLRVLLKVFSMKAFSWRDVHYNLGVKLFYG 189 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-----~~~~~~~vyss~t~~W~~~~~~~~~~~~~~ 189 (358)
+++++|--++.|.................+.. . +++-++... .....+..|+..|++|+.....-. +|..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~--~-~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~--~P~~ 163 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSA--V-GDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD--PPPP 163 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEE--E-CCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC--CCCC
Confidence 49999999988887654432211111001110 0 122222211 123589999999999988765211 2222
Q ss_pred cCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC----CCCCceEEEEECCeeEEEeecccccCCCCc
Q 040165 190 TESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA----CHPRSVSLGVVGGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 190 ~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P----~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~ 265 (358)
. ..+..+.++-++|..++.+........+.+||+.+.+|..+... ..+....+++.+++++++.+... .....
T Consensus 164 r-~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~--~~~~l 240 (482)
T KOG0379|consen 164 R-AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD--GDVYL 240 (482)
T ss_pred c-ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc--CCcee
Confidence 2 44677778888999988765443457899999999999998554 22345667788999999986541 12334
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-------cceEEEEECCCCeEEEe
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-------WREFISCNLNERTLEEI 335 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-------~~~l~~yd~~t~~~~~v 335 (358)
=++|.|+-. ..+|.+........- .+......+ . +..+++.... .+.++.||.+++.|.++
T Consensus 241 ~D~~~ldl~--~~~W~~~~~~g~~p~---~R~~h~~~~---~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 241 NDVHILDLS--TWEWKLLPTGGDLPS---PRSGHSLTV---S-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred cceEeeecc--cceeeeccccCCCCC---CcceeeeEE---E-CCEEEEEcCCcccccccccccccccccccceeee
Confidence 567888763 267874433322111 112233333 1 2224443321 22589999999999998
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.32 E-value=0.03 Score=50.98 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=91.7
Q ss_pred eEEEEEEcCCCceEecccccccccccccCCCCceEEEC-ceEEEEeecCCCCCC-----CcEEEEEECCCCeeEEecCC-
Q 040165 163 VLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFN-GALHWLVSGFHFGSQ-----DPVIIAFDLAEEKFCRVGEA- 235 (358)
Q Consensus 163 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~~~~~-----~~~i~~fD~~~~~~~~i~~P- 235 (358)
.....|+.+++.|+.+.++. .|.. ++.+.+|.+- |.+|..++....+.+ =--+..||+.+.+|..+.++
T Consensus 98 ndLy~Yn~k~~eWkk~~spn---~P~p-Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPN---APPP-RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCC---CcCC-CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 46888999999999987620 2222 2445566554 766666655432211 02578999999999999888
Q ss_pred C--CCCceEEEEECCeeEEEeecccccCC---CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCC
Q 040165 236 C--HPRSVSLGVVGGCLSLNVCCSNCVDK---TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGG 310 (358)
Q Consensus 236 ~--~~~~~~l~~~~g~L~lv~~~~~~~~~---~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g 310 (358)
+ .+...+++....+|.++++-...... -..+.++.|+. ..|++... +-. . +.-+.-..+.+ ..+|
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt----ykW~Klep-sga-~-PtpRSGcq~~v---tpqg 243 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT----YKWSKLEP-SGA-G-PTPRSGCQFSV---TPQG 243 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc----eeeeeccC-CCC-C-CCCCCcceEEe---cCCC
Confidence 2 23556788999999999874321111 23444444554 68999766 221 1 11111222333 4456
Q ss_pred cEEEEEcCc--------------ceEEEEECCC
Q 040165 311 DEIIMINKW--------------REFISCNLNE 329 (358)
Q Consensus 311 ~i~~~~~~~--------------~~l~~yd~~t 329 (358)
.|++..+.. ..++..++++
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 677755321 1488888887
No 33
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.31 E-value=0.096 Score=45.59 Aligned_cols=208 Identities=13% Similarity=0.017 Sum_probs=113.4
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
...+|-|.+.......++.++|.+++...+..+. ..++.++...+.+-|.. .....+++..+++++.+.
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~----~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVAD----SGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEE----TTCEEEEETTTTEEEEEE
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEE----cCceEEEecCCCcEEEEe
Confidence 3346777666346788999999999886654433 34566664334443322 355667799999998776
Q ss_pred cccccccccc----cCCCCceEEECceEEEEeecCCCCCCC--cEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEE
Q 040165 180 YNLGVKLFYG----TESPPKGCLFNGALHWLVSGFHFGSQD--PVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSL 252 (358)
Q Consensus 180 ~~~~~~~~~~----~~~~~~~v~~~G~lywl~~~~~~~~~~--~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~l 252 (358)
. .+.. ...+.-.+.-+|.+|+-.......... ..+..+|.. ++.+.+.-.... --.|+.. +|+..+
T Consensus 77 ~-----~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 77 D-----LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-PNGIAFSPDGKTLY 149 (246)
T ss_dssp E-----EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-EEEEEEETTSSEEE
T ss_pred e-----ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-ccceEECCcchhee
Confidence 5 2211 111233445578988776654322112 579999999 555443111110 1133433 665444
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEe-ecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKI-DNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
+. ...... ||.++-......+.....+ +.... ......+++ -.+|+|++.......+..||++.+.
T Consensus 150 v~-----ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~---~g~pDG~~v---D~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 150 VA-----DSFNGR--IWRFDLDADGGELSNRRVFIDFPGG---PGYPDGLAV---DSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EE-----ETTTTE--EEEEEEETTTCCEEEEEEEEE-SSS---SCEEEEEEE---BTTS-EEEEEETTTEEEEEETTSCE
T ss_pred ec-----ccccce--eEEEeccccccceeeeeeEEEcCCC---CcCCCcceE---cCCCCEEEEEcCCCEEEEECCCccE
Confidence 43 123344 4555432222346554433 33221 122455666 6688899887655569999999666
Q ss_pred EEEeeccc
Q 040165 332 LEEIYRPN 339 (358)
Q Consensus 332 ~~~v~~~~ 339 (358)
.+++ .+.
T Consensus 217 ~~~i-~~p 223 (246)
T PF08450_consen 217 LREI-ELP 223 (246)
T ss_dssp EEEE-E-S
T ss_pred EEEE-cCC
Confidence 7777 776
No 34
>PF13964 Kelch_6: Kelch motif
Probab=97.25 E-value=0.0009 Score=42.52 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCC
Q 040165 193 PPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEA 235 (358)
Q Consensus 193 ~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P 235 (358)
....|.++|.||.+++..........+..||+++++|+.+ ++|
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 4667899999999999875333356899999999999998 444
No 35
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0055 Score=54.60 Aligned_cols=181 Identities=11% Similarity=0.093 Sum_probs=109.9
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECc-eEEEEeecCCC----------------------------
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNG-ALHWLVSGFHF---------------------------- 212 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~---------------------------- 212 (358)
...+..|++.+|+|..++. ..|... ....++..+| .+|+.++-...
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t----~sP~gl-~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~ 186 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDT----RSPTGL-VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD 186 (381)
T ss_pred eeeeEEecCCCChhheecc----cccccc-ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence 3578999999999999886 245443 4455666666 89998764320
Q ss_pred -----CCCCcEEEEEECCCCeeEEe-cCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEE
Q 040165 213 -----GSQDPVIIAFDLAEEKFCRV-GEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTK 285 (358)
Q Consensus 213 -----~~~~~~i~~fD~~~~~~~~i-~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~ 285 (358)
...-..+++||+.+++|+.. ..|+.. +...++-.+++|.++.+.-. ...++-++|+.+-.++...|.+...
T Consensus 187 ~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiK--pGLRt~~~k~~~~~~~~~~w~~l~~ 264 (381)
T COG3055 187 KKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIK--PGLRTAEVKQADFGGDNLKWLKLSD 264 (381)
T ss_pred CCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceec--CCccccceeEEEeccCceeeeeccC
Confidence 01235799999999999998 588432 33344445777888886432 1246677777665545689988866
Q ss_pred eecCCccccCceeeEEEEeeecCCCcEEEEEcC------------------------cceEEEEECCCCeEEEeeccc--
Q 040165 286 IDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK------------------------WREFISCNLNERTLEEIYRPN-- 339 (358)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------------------------~~~l~~yd~~t~~~~~v~~~~-- 339 (358)
++...-.. .....+...+-.++.+++.... .+.++.+| ++.|+.+.+++
T Consensus 265 lp~~~~~~---~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~ 339 (381)
T COG3055 265 LPAPIGSN---KEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG 339 (381)
T ss_pred CCCCCCCC---ccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC
Confidence 66543211 1233333222334444443210 01588888 99999995554
Q ss_pred cccceeeeeeecccC
Q 040165 340 FDWCETVSYTESILS 354 (358)
Q Consensus 340 ~~~~~~~~y~~sl~~ 354 (358)
..+-....|.+.++.
T Consensus 340 l~YG~s~~~nn~vl~ 354 (381)
T COG3055 340 LAYGVSLSYNNKVLL 354 (381)
T ss_pred ccceEEEecCCcEEE
Confidence 234444455554443
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.78 E-value=0.003 Score=39.38 Aligned_cols=43 Identities=2% Similarity=-0.063 Sum_probs=34.7
Q ss_pred CCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCC
Q 040165 193 PPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEA 235 (358)
Q Consensus 193 ~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P 235 (358)
...++.++|.||.+++..........+..||+.+++|..+ ++|
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 3567899999999999876434457999999999999987 444
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00025 Score=61.69 Aligned_cols=38 Identities=37% Similarity=0.405 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHhccCCcccceeeeecccccccccCChH
Q 040165 2 WSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPK 40 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~ 40 (358)
+.||||++. .||+.|+.|+|+++..|||+|+.+.++..
T Consensus 99 ~slpDEill-~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 99 DSLPDEILL-GIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred ccCCHHHHH-HHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 479999999 99999999999999999999999987655
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.24 E-value=0.016 Score=36.50 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCCceEEECceEEEEeec--CCCCCCCcEEEEEECCCCeeEEec
Q 040165 192 SPPKGCLFNGALHWLVSG--FHFGSQDPVIIAFDLAEEKFCRVG 233 (358)
Q Consensus 192 ~~~~~v~~~G~lywl~~~--~~~~~~~~~i~~fD~~~~~~~~i~ 233 (358)
..+.++..+|+||.+++. .........+..||+++.+|+.++
T Consensus 3 ~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 3 YGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred cceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 346788999999999988 323334568999999999999874
No 39
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.03 E-value=0.57 Score=40.87 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=83.5
Q ss_pred cccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCCC---C--------C-CceEEEEECCeeEE
Q 040165 186 LFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEAC---H--------P-RSVSLGVVGGCLSL 252 (358)
Q Consensus 186 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~---~--------~-~~~~l~~~~g~L~l 252 (358)
+|... .+.+.|..||.+|...... ..|+.||+.+++.. ...+|. . . ..+.+++-+..|.+
T Consensus 65 Lp~~~-~GtG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWv 137 (250)
T PF02191_consen 65 LPYPW-QGTGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWV 137 (250)
T ss_pred Eecee-ccCCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEE
Confidence 55433 3466788999999998864 69999999999988 677871 1 1 45789999999999
Q ss_pred EeecccccCCCCcEEEEEEccC--CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC----cceEEEEE
Q 040165 253 NVCCSNCVDKTTDFELWVMKQY--GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK----WREFISCN 326 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~----~~~l~~yd 326 (358)
+..... ....+.|=.|+.. ...+.|.-- ++-. ...-++ -..|.|+..... ..--+.||
T Consensus 138 IYat~~---~~g~ivvskld~~tL~v~~tw~T~--~~k~--------~~~naF---mvCGvLY~~~s~~~~~~~I~yafD 201 (250)
T PF02191_consen 138 IYATED---NNGNIVVSKLDPETLSVEQTWNTS--YPKR--------SAGNAF---MVCGVLYATDSYDTRDTEIFYAFD 201 (250)
T ss_pred EEecCC---CCCcEEEEeeCcccCceEEEEEec--cCch--------hhccee---eEeeEEEEEEECCCCCcEEEEEEE
Confidence 975431 2346888888763 222445321 1111 111222 123656655432 22468999
Q ss_pred CCCCeEEEeeccc
Q 040165 327 LNERTLEEIYRPN 339 (358)
Q Consensus 327 ~~t~~~~~v~~~~ 339 (358)
+.+++-+.+ .+.
T Consensus 202 t~t~~~~~~-~i~ 213 (250)
T PF02191_consen 202 TYTGKEEDV-SIP 213 (250)
T ss_pred CCCCceece-eee
Confidence 999988877 665
No 40
>smart00284 OLF Olfactomedin-like domains.
Probab=96.02 E-value=0.32 Score=42.21 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=81.9
Q ss_pred cccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCC---C--------C-CceEEEEECCeeEE
Q 040165 186 LFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEAC---H--------P-RSVSLGVVGGCLSL 252 (358)
Q Consensus 186 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~---~--------~-~~~~l~~~~g~L~l 252 (358)
+|... .+...|..||.+|...... ..|+.||+.+++.... .+|. + . ..+.+++-+..|.+
T Consensus 70 Lp~~~-~GtG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWv 142 (255)
T smart00284 70 LPHAG-QGTGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWV 142 (255)
T ss_pred CCCcc-ccccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEE
Confidence 44433 3467889999999977664 5899999999998643 4661 1 1 45889999999999
Q ss_pred EeecccccCCCCcEEEEEEccC--CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc----CcceEEEEE
Q 040165 253 NVCCSNCVDKTTDFELWVMKQY--GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN----KWREFISCN 326 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~----~~~~l~~yd 326 (358)
+-..+ .....|.|-.|+.. +..+.|.. .++-. ...-++ -..|.|+.... +.+-.+.||
T Consensus 143 IYat~---~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~--------sa~naF---mvCGvLY~~~s~~~~~~~I~yayD 206 (255)
T smart00284 143 IYATE---QNAGKIVISKLNPATLTIENTWIT--TYNKR--------SASNAF---MICGILYVTRSLGSKGEKVFYAYD 206 (255)
T ss_pred EEecc---CCCCCEEEEeeCcccceEEEEEEc--CCCcc--------cccccE---EEeeEEEEEccCCCCCcEEEEEEE
Confidence 97543 23467888888863 12234433 11111 111222 11365666542 223588999
Q ss_pred CCCCeEEEeeccc
Q 040165 327 LNERTLEEIYRPN 339 (358)
Q Consensus 327 ~~t~~~~~v~~~~ 339 (358)
..|++-+.+ .+.
T Consensus 207 t~t~~~~~~-~i~ 218 (255)
T smart00284 207 TNTGKEGHL-DIP 218 (255)
T ss_pred CCCCcccee-eee
Confidence 999887776 665
No 41
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.80 E-value=0.61 Score=40.37 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=95.9
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCC----CeeEEecC-C-
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE----EKFCRVGE-A- 235 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~----~~~~~i~~-P- 235 (358)
.....+|++.+++++.+.. .....+....+.-||.+.-.++..+. ...+-.|++.+ ..|....- .
T Consensus 45 ~a~s~~yD~~tn~~rpl~v------~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~ 115 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTV------QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQ 115 (243)
T ss_pred eEEEEEEecCCCcEEeccC------CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECccccc
Confidence 4567889999999998864 33344556667778988877766532 24677788765 45655422 2
Q ss_pred CCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCC-CCceeEEEEeecCCccccCceeeEEEEeeecCCCcEE
Q 040165 236 CHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGV-HSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEI 313 (358)
Q Consensus 236 ~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~ 313 (358)
..+.+.....+ ||++.++++.. ....+.|--..... ...|........ .......|.... ..+|+||
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~-----~~t~E~~P~~~~~~~~~~~~~l~~~~~----~~~~nlYP~~~l--lPdG~lF 184 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSN-----NPTYEFWPPKGPGPGPVTLPFLSQTSD----TLPNNLYPFVHL--LPDGNLF 184 (243)
T ss_pred CCCccccceECCCCCEEEEeCcC-----CCcccccCCccCCCCceeeecchhhhc----cCccccCceEEE--cCCCCEE
Confidence 23456666665 99999999643 34556553322111 012211111110 011124554432 6789999
Q ss_pred EEEcCcceEEEEECCCCeE-EEeeccccccceeeeeeec
Q 040165 314 IMINKWREFISCNLNERTL-EEIYRPNFDWCETVSYTES 351 (358)
Q Consensus 314 ~~~~~~~~l~~yd~~t~~~-~~v~~~~~~~~~~~~y~~s 351 (358)
+..... -..||.+++++ +.+=.+ +.-.+.++...|
T Consensus 185 i~an~~--s~i~d~~~n~v~~~lP~l-Pg~~R~YP~sgs 220 (243)
T PF07250_consen 185 IFANRG--SIIYDYKTNTVVRTLPDL-PGGPRNYPASGS 220 (243)
T ss_pred EEEcCC--cEEEeCCCCeEEeeCCCC-CCCceecCCCcc
Confidence 887765 66789999987 444122 222455555554
No 42
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.72 E-value=0.0022 Score=56.10 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=39.4
Q ss_pred CCCChHHHHHHHHhccC-----CcccceeeeecccccccccCChHHHHHHH
Q 040165 1 MWSIPKDILEAEILCRL-----PIKSLLRFKCVSKEWHCLISDPKFALYRQ 46 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rL-----p~~~l~r~r~VcK~W~~li~~p~F~~~~~ 46 (358)
|..||+|+|. +||.++ ..++|.++.+|||.|+-...+|+|-+.-+
T Consensus 107 ~~~LPdEvLm-~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLM-RIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHH-HHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 4579999999 999884 45999999999999999999999877654
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.97 E-value=0.038 Score=34.64 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCceEEE-CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe
Q 040165 193 PPKGCLF-NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV 232 (358)
Q Consensus 193 ~~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i 232 (358)
.+.++.+ ++.+|..++..........+..||+.+++|+.+
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 3556666 589999988764322335789999999999998
No 44
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.72 E-value=2.7 Score=36.76 Aligned_cols=149 Identities=10% Similarity=-0.051 Sum_probs=83.7
Q ss_pred ccceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCCCC
Q 040165 160 CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEACHP 238 (358)
Q Consensus 160 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~ 238 (358)
.....+..|++.|++=..... +|... .....+.+++.+|-++... .....||..+-+- ...+.|-
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~-----l~~~~-FgEGit~~~d~l~qLTWk~------~~~f~yd~~tl~~~~~~~y~~-- 130 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVP-----LPPRY-FGEGITILGDKLYQLTWKE------GTGFVYDPNTLKKIGTFPYPG-- 130 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE------TTT---EEEEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEE-SS--
T ss_pred CCcEEEEEEECCCCcEEEEEE-----CCccc-cceeEEEECCEEEEEEecC------CeEEEEccccceEEEEEecCC--
Confidence 456788999999986443332 44322 2345568899999999886 5889999986322 2234442
Q ss_pred CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC
Q 040165 239 RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK 318 (358)
Q Consensus 239 ~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~ 318 (358)
..-.|+..+..|.+-. ... .++.++. +....+.+|.+..-........-+-. .+|.|+-..-.
T Consensus 131 EGWGLt~dg~~Li~SD-------GS~--~L~~~dP----~~f~~~~~i~V~~~g~pv~~LNELE~----i~G~IyANVW~ 193 (264)
T PF05096_consen 131 EGWGLTSDGKRLIMSD-------GSS--RLYFLDP----ETFKEVRTIQVTDNGRPVSNLNELEY----INGKIYANVWQ 193 (264)
T ss_dssp S--EEEECSSCEEEE--------SSS--EEEEE-T----TT-SEEEEEE-EETTEE---EEEEEE----ETTEEEEEETT
T ss_pred cceEEEcCCCEEEEEC-------Ccc--ceEEECC----cccceEEEEEEEECCEECCCcEeEEE----EcCEEEEEeCC
Confidence 2334554444444433 233 4455554 35666666665421111122333433 26878877766
Q ss_pred cceEEEEECCCCeEEEeeccc
Q 040165 319 WREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 319 ~~~l~~yd~~t~~~~~v~~~~ 339 (358)
.+.++.-|++|+++...+++.
T Consensus 194 td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-H
T ss_pred CCeEEEEeCCCCeEEEEEEhh
Confidence 667999999999998876554
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.07 E-value=1.3 Score=38.67 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=76.5
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceE
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWR 176 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~ 176 (358)
+++.-+|-|-...-..+-+...||.++.--.+|.+....... -....|+... +++. -....+..|++.+.+|.
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gs--Rriwsdpig~----~wittwg~g~l~rfdPs~~sW~ 267 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGS--RRIWSDPIGR----AWITTWGTGSLHRFDPSVTSWI 267 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccc--cccccCccCc----EEEeccCCceeeEeCcccccce
Confidence 777777777665224555677899999777787775422111 1123344332 2222 24567889999999998
Q ss_pred ecccccccccccccCCCCceEEECc-eEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC
Q 040165 177 DVHYNLGVKLFYGTESPPKGCLFNG-ALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA 235 (358)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P 235 (358)
+-.- |... ....++++|. -.-|+.... ...|..||+++++|++++.|
T Consensus 268 eypL------Pgs~-arpys~rVD~~grVW~sea~-----agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 268 EYPL------PGSK-ARPYSMRVDRHGRVWLSEAD-----AGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eeeC------CCCC-CCcceeeeccCCcEEeeccc-----cCceeecCcccceEEEecCC
Confidence 8763 3221 2244555554 255665554 35899999999999999988
No 46
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.89 E-value=1.2 Score=42.10 Aligned_cols=216 Identities=10% Similarity=0.052 Sum_probs=105.0
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE--ccceEEEEEEcCCCc--eEecccc-c-ccccc
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS--CLRVLLKVFSMKAFS--WRDVHYN-L-GVKLF 187 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~--~~~~~~~vyss~t~~--W~~~~~~-~-~~~~~ 187 (358)
+.+.|+|..|++|..- ....+.... .+++||.....+.-|+..+ .....=+.|.+...+ |+.+... + .-.+|
T Consensus 57 DELHvYNTatnqWf~P-avrGDiPpg-cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pP 134 (830)
T KOG4152|consen 57 DELHVYNTATNQWFAP-AVRGDIPPG-CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPP 134 (830)
T ss_pred hhhhhhccccceeecc-hhcCCCCCc-hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCC
Confidence 4678999999999753 222221112 3344444444434444332 345566777777654 5666542 1 11233
Q ss_pred cccCCCCceEEECceEEEEeecCCCCC----------CCcEEEEEECCCC--eeEEe----cCCC-CC-CceEEE-EECC
Q 040165 188 YGTESPPKGCLFNGALHWLVSGFHFGS----------QDPVIIAFDLAEE--KFCRV----GEAC-HP-RSVSLG-VVGG 248 (358)
Q Consensus 188 ~~~~~~~~~v~~~G~lywl~~~~~~~~----------~~~~i~~fD~~~~--~~~~i----~~P~-~~-~~~~l~-~~~g 248 (358)
... -.+.-+..+.+.|.+++-...+. ...+++-+....+ -|... .+|. .+ ....+- +.|.
T Consensus 135 CPR-lGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs 213 (830)
T KOG4152|consen 135 CPR-LGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDS 213 (830)
T ss_pred CCc-cCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccC
Confidence 332 34566677889999987543221 1234555544444 34331 2332 12 222222 2233
Q ss_pred ---eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccC-------ceeeEEEEeeecCCCcEEEEEc-
Q 040165 249 ---CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYH-------GSLVTLCTATGTDGGDEIIMIN- 317 (358)
Q Consensus 249 ---~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~g~i~~~~~- 317 (358)
++++.++... .+-=++|.||- +...|.+...-....+++.. +...+++-|+-....++-....
T Consensus 214 ~~skmvvyGGM~G----~RLgDLW~Ldl--~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~he 287 (830)
T KOG4152|consen 214 KKSKMVVYGGMSG----CRLGDLWTLDL--DTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHE 287 (830)
T ss_pred CcceEEEEccccc----ccccceeEEec--ceeecccccccCCCCCCcccccceeecceeEEecceeeeecccccccccc
Confidence 5666665332 23346799986 23789986533333333321 1111111111000011111111
Q ss_pred -Cc---ceEEEEECCCCeEEEeeccc
Q 040165 318 -KW---REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 318 -~~---~~l~~yd~~t~~~~~v~~~~ 339 (358)
.+ ..+-+.|++|..|+.+ .+.
T Consensus 288 kEWkCTssl~clNldt~~W~tl-~~d 312 (830)
T KOG4152|consen 288 KEWKCTSSLACLNLDTMAWETL-LMD 312 (830)
T ss_pred ceeeeccceeeeeecchheeee-eec
Confidence 11 1588999999999998 554
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.71 E-value=5.2 Score=36.25 Aligned_cols=138 Identities=9% Similarity=0.134 Sum_probs=78.1
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCC--CCCcEEEEEECCCCeeEEe-cCC--C
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFG--SQDPVIIAFDLAEEKFCRV-GEA--C 236 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~~i~~fD~~~~~~~~i-~~P--~ 236 (358)
...+-+|++.++.|+.... .|+...+.+..+.-++++-.+.++-... .......-|.-...+|..+ ++| .
T Consensus 195 n~ev~sy~p~~n~W~~~G~-----~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGE-----NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred cccccccccccchhhhcCc-----CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 4678889999999999886 5654433323333333344443332111 0113455566668899887 555 2
Q ss_pred -CCC----ceEEEEECCeeEEEeecccc----------------cCCCCcEEEEEEccCCCCCceeEEEEeecCCccccC
Q 040165 237 -HPR----SVSLGVVGGCLSLNVCCSNC----------------VDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYH 295 (358)
Q Consensus 237 -~~~----~~~l~~~~g~L~lv~~~~~~----------------~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~ 295 (358)
.+. -..-+..+|.+.+.++-... .....+-+||.+++ .+|..+..++...
T Consensus 270 ~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l----- 340 (381)
T COG3055 270 GSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGL----- 340 (381)
T ss_pred CCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCc-----
Confidence 111 11223456666665543100 11244678898885 7899999888732
Q ss_pred ceeeEEEEeeecCCCcEEEEEcC
Q 040165 296 GSLVTLCTATGTDGGDEIIMINK 318 (358)
Q Consensus 296 ~~~~~~~~~~~~~~g~i~~~~~~ 318 (358)
...+.+ ..++.|+++..+
T Consensus 341 --~YG~s~---~~nn~vl~IGGE 358 (381)
T COG3055 341 --AYGVSL---SYNNKVLLIGGE 358 (381)
T ss_pred --cceEEE---ecCCcEEEEccc
Confidence 455555 556667776643
No 48
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.35 E-value=0.27 Score=30.23 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=30.9
Q ss_pred ceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEee
Q 040165 240 SVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKID 287 (358)
Q Consensus 240 ~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~ 287 (358)
...++..+++|+++++..+. ....-.+|.++.. ...|+.+..|+
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~--~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPE--TNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBEST--SSBEEEEEEEETT--TTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeeccc--CceeeeEEEEeCC--CCEEEEcCCCC
Confidence 45678899999999987651 2344555666542 37999998775
No 49
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.20 E-value=3 Score=38.30 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred EEEEEECCCCeeEEecCC-CCCCceEEEEECCeeEEEeecccccCCC----CcEEEEEEcc----CCCCCceeEEEEeec
Q 040165 218 VIIAFDLAEEKFCRVGEA-CHPRSVSLGVVGGCLSLNVCCSNCVDKT----TDFELWVMKQ----YGVHSSWERLTKIDN 288 (358)
Q Consensus 218 ~i~~fD~~~~~~~~i~~P-~~~~~~~l~~~~g~L~lv~~~~~~~~~~----~~~~vW~l~~----~~~~~~W~~~~~i~~ 288 (358)
..+.||+.+......|.. ........+..+|+||+........... ..+++-..+. ......|+=.. ++.
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~-LP~ 165 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS-LPP 165 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-CCC
Confidence 689999999887744332 2222223334488899998543211010 1566665441 11224443332 433
Q ss_pred CCccccCce----eeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 289 DIMVRYHGS----LVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 289 ~~~~~~~~~----~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
..+...... ....++ . +|. |++...+. + -|+||.++.+|+++
T Consensus 166 PPf~~~~~~~~~~i~sYav---v-~g~~I~vS~~~~~~G-TysfDt~~~~W~~~ 214 (342)
T PF07893_consen 166 PPFVRDRRYSDYRITSYAV---V-DGRTIFVSVNGRRWG-TYSFDTESHEWRKH 214 (342)
T ss_pred CCccccCCcccceEEEEEE---e-cCCeEEEEecCCceE-EEEEEcCCcceeec
Confidence 333222111 344444 3 455 88866543 4 99999999999998
No 50
>smart00612 Kelch Kelch domain.
Probab=93.11 E-value=0.2 Score=30.54 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=24.0
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECc
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNG 201 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G 201 (358)
...+++|++++++|+..+. ++... ....++.++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~-----~~~~r-~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS-----MPTPR-SGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCC-----CCCcc-ccceEEEeCC
Confidence 4578999999999998887 66544 3344455554
No 51
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.68 E-value=5.8 Score=33.82 Aligned_cols=143 Identities=14% Similarity=0.043 Sum_probs=75.9
Q ss_pred eEEEEEEcCCC--ceEecccccccccccccCCC-CceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCC
Q 040165 163 VLLKVFSMKAF--SWRDVHYNLGVKLFYGTESP-PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHP 238 (358)
Q Consensus 163 ~~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~ 238 (358)
..+..++..++ .|+.--. .+ .... ...+..+|.+|..... ..+.++|..+++-.. ..++..-
T Consensus 3 g~l~~~d~~tG~~~W~~~~~-----~~--~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~ 68 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG-----PG--IGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPI 68 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS-----SS--CSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCG
T ss_pred CEEEEEECCCCCEEEEEECC-----CC--CCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeeccccc
Confidence 35677888776 4877322 11 1011 1244578888888544 489999987664332 1333110
Q ss_pred CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeE-EEEeecCCccccCceeeEEEEeeecCCCcEEEEEc
Q 040165 239 RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWER-LTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN 317 (358)
Q Consensus 239 ~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 317 (358)
.......++++++.. . .. .++.++....+..|.. ...-+.... .......+ .++.+++...
T Consensus 69 -~~~~~~~~~~v~v~~-----~--~~--~l~~~d~~tG~~~W~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~ 130 (238)
T PF13360_consen 69 -SGAPVVDGGRVYVGT-----S--DG--SLYALDAKTGKVLWSIYLTSSPPAGV----RSSSSPAV----DGDRLYVGTS 130 (238)
T ss_dssp -GSGEEEETTEEEEEE-----T--TS--EEEEEETTTSCEEEEEEE-SSCTCST----B--SEEEE----ETTEEEEEET
T ss_pred -cceeeeccccccccc-----c--ee--eeEecccCCcceeeeecccccccccc----ccccCceE----ecCEEEEEec
Confidence 111466788888887 2 12 5566652223468874 332222211 00122222 2333656554
Q ss_pred CcceEEEEECCCCeEEEeecc
Q 040165 318 KWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 318 ~~~~l~~yd~~t~~~~~v~~~ 338 (358)
.. .++.+|++|++..+-+..
T Consensus 131 ~g-~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 131 SG-KLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp CS-EEEEEETTTTEEEEEEES
T ss_pred cC-cEEEEecCCCcEEEEeec
Confidence 44 499999999987554333
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.55 E-value=9.1 Score=35.83 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=63.1
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEE
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVM 271 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l 271 (358)
..++..+|.+|.....+ .+.++|+.++ .|+. +... ...++..+|+|++.. . ...+.....
T Consensus 250 ~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~---~~~~~~~~~~vy~~~-----~--~g~l~ald~ 311 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR-EYGS---VNDFAVDGGRIYLVD-----Q--NDRVYALDT 311 (394)
T ss_pred CCcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee-cCCC---ccCcEEECCEEEEEc-----C--CCeEEEEEC
Confidence 56678899999877654 8999999875 4654 2221 112345677777766 1 233333333
Q ss_pred ccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 272 KQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 272 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
++ .+..|.... .... ....|... +|.|++...+. .++.+|.+|++...-+++
T Consensus 312 ~t--G~~~W~~~~-~~~~------~~~sp~v~-----~g~l~v~~~~G-~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 312 RG--GVELWSQSD-LLHR------LLTAPVLY-----NGYLVVGDSEG-YLHWINREDGRFVAQQKV 363 (394)
T ss_pred CC--CcEEEcccc-cCCC------cccCCEEE-----CCEEEEEeCCC-EEEEEECCCCCEEEEEEc
Confidence 32 234564321 1000 11334433 56677766555 499999999876554344
No 53
>PLN02772 guanylate kinase
Probab=92.46 E-value=1.1 Score=41.65 Aligned_cols=76 Identities=4% Similarity=-0.050 Sum_probs=53.6
Q ss_pred CCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe----cCCCCC-CceEEEEECCeeEEEeecccccCCCCcEE
Q 040165 193 PPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV----GEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 193 ~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~ 267 (358)
...++.+++++|.+++..+.......+-+||..+.+|..- ..|... .+-.+...+++|.++... ....=+
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~-----~~~~~~ 101 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG-----SAPDDS 101 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC-----CCCccc
Confidence 3778899999999998665432346899999999999874 234222 344445558999999843 334567
Q ss_pred EEEEcc
Q 040165 268 LWVMKQ 273 (358)
Q Consensus 268 vW~l~~ 273 (358)
+|.|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 899874
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.44 E-value=4.1 Score=37.41 Aligned_cols=116 Identities=12% Similarity=0.146 Sum_probs=67.6
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---cc--c-----eEEEEEE---
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CL--R-----VLLKVFS--- 169 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~--~-----~~~~vys--- 169 (358)
+.-|+.. +......|+|+.|+....+|.+.........+.+ .++ +.++. .. . ..+|+++
T Consensus 76 gskIv~~-d~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~V-----G~~--LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 76 GSKIVAV-DQSGRTLVYDTDTRAVATGPRLHSPKRCPISVSV-----GDK--LYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred CCeEEEE-cCCCCeEEEECCCCeEeccCCCCCCCcceEEEEe-----CCe--EEEeeccCccccccCccceeEEEecccc
Confidence 3344333 3556688999999999999987654332222222 122 22222 00 0 1555552
Q ss_pred -------cCCCceEecccccccccccccCC-------CCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe---
Q 040165 170 -------MKAFSWRDVHYNLGVKLFYGTES-------PPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV--- 232 (358)
Q Consensus 170 -------s~t~~W~~~~~~~~~~~~~~~~~-------~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i--- 232 (358)
.++-+|+.++. +|+.... ...+|. +|.=-|+...+.. ..-.+||+.+.+|+..
T Consensus 148 ~~~~~~~~~~w~W~~LP~-----PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPP-----PPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccccccCCCcceEEcCCC-----CCccccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcCCcceeeccce
Confidence 22347888776 4433211 234455 7887777666411 2689999999999998
Q ss_pred cCCC
Q 040165 233 GEAC 236 (358)
Q Consensus 233 ~~P~ 236 (358)
.+|+
T Consensus 218 ~LPF 221 (342)
T PF07893_consen 218 MLPF 221 (342)
T ss_pred ecCc
Confidence 7884
No 55
>smart00612 Kelch Kelch domain.
Probab=91.98 E-value=0.55 Score=28.51 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=26.5
Q ss_pred EEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEEC
Q 040165 203 LHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVG 247 (358)
Q Consensus 203 lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~ 247 (358)
||.+++... ......+..||+.+++|+.+ ++|..+....++..+
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence 566665432 11235789999999999987 444333334444444
No 56
>PF13964 Kelch_6: Kelch motif
Probab=91.85 E-value=0.33 Score=30.42 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=29.6
Q ss_pred ceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEee
Q 040165 240 SVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKID 287 (358)
Q Consensus 240 ~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~ 287 (358)
...++..+|+|+++++..+. ....-++|.++. ...+|+++..|+
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~--~t~~W~~~~~mp 47 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDP--ETNTWEQLPPMP 47 (50)
T ss_pred cCEEEEECCEEEEECCCCCC--CCccccEEEEcC--CCCcEEECCCCC
Confidence 34678889999999986542 223445566554 227999987665
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.75 E-value=6.6 Score=36.85 Aligned_cols=193 Identities=10% Similarity=0.038 Sum_probs=103.6
Q ss_pred cccccceeccCCCCCCCCCCceEEEeEeCCC-CCeEEEEEEccceEEEEEEcCCCceEe-cccccccccccccCCCCceE
Q 040165 120 NPSTRAHKKLPDPDISLGSPYLYGFGYDSST-DDYKVLAVSCLRVLLKVFSMKAFSWRD-VHYNLGVKLFYGTESPPKGC 197 (358)
Q Consensus 120 NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~-~~ykvv~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~~~~~~v 197 (358)
+|-++.|...-.++..........+.+.|.. -+|.|. ...++++|++.+.+=+. +.. . ........+
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt----~S~rvqly~~~~~~~~k~~sr-----F--k~~v~s~~f 76 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVT----SSVRVQLYSSVTRSVRKTFSR-----F--KDVVYSVDF 76 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCCCCceEEe----cccEEEEEecchhhhhhhHHh-----h--ccceeEEEe
Confidence 4555666655433322222223445555653 234443 46799999998864333 221 1 110113334
Q ss_pred EECceEEEEeecCCCCCCCcEEEEEECCCCee-EEe---cCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEcc
Q 040165 198 LFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRV---GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 198 ~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i---~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
..||.|...+... .-+-.||..+..- +.+ ..|.+ ......-++.+++.+ ++.....+|.+.+
T Consensus 77 R~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~--~~~f~~~d~t~l~s~------sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 77 RSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVH--VTKFSPQDNTMLVSG------SDDKVVKYWDLST 142 (487)
T ss_pred ecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCcee--EEEecccCCeEEEec------CCCceEEEEEcCC
Confidence 5679998888775 4788999555211 111 22221 122223455655555 3567899999876
Q ss_pred CCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc-cccceeeeeeec
Q 040165 274 YGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN-FDWCETVSYTES 351 (358)
Q Consensus 274 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~-~~~~~~~~y~~s 351 (358)
. . + +..+.- +..+.+..++ .+.++.|++.+...+.+-.||.++.+ .+++.++ +.....++|.+|
T Consensus 143 a---~--v-~~~l~~-----htDYVR~g~~--~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 143 A---Y--V-QAELSG-----HTDYVRCGDI--SPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPS 207 (487)
T ss_pred c---E--E-EEEecC-----CcceeEeecc--ccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCC
Confidence 1 2 2 333332 2223444444 24456688877665579999999987 5554565 333344555544
No 58
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.71 E-value=5 Score=36.42 Aligned_cols=121 Identities=11% Similarity=0.062 Sum_probs=71.2
Q ss_pred ceEEEC--ceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCC-C------CC---CceE-EEE--ECCeeEEEeecc-
Q 040165 195 KGCLFN--GALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEA-C------HP---RSVS-LGV--VGGCLSLNVCCS- 257 (358)
Q Consensus 195 ~~v~~~--G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P-~------~~---~~~~-l~~--~~g~L~lv~~~~- 257 (358)
.+++.+ |.+||.+..+ .|...|++.+.-... +.+ . ++ ...+ ++. -.|+||+.....
T Consensus 188 ~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp --EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred ccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 444443 6799988886 889999998764443 111 1 11 1122 232 378999876322
Q ss_pred cccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEE-EcCcceEEEEECCCCeEEEe
Q 040165 258 NCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIM-INKWREFISCNLNERTLEEI 335 (358)
Q Consensus 258 ~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~-~~~~~~l~~yd~~t~~~~~v 335 (358)
+...+...-+||++|- ..=.++.+|+++.- ...+++ ..+.+ +++. ......++.||..|++...-
T Consensus 261 ~gsHKdpgteVWv~D~----~t~krv~Ri~l~~~------~~Si~V---sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDL----KTHKRVARIPLEHP------IDSIAV---SQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TT-TTS-EEEEEEEET----TTTEEEEEEEEEEE------ESEEEE---ESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCCccCCceEEEEEEC----CCCeEEEEEeCCCc------cceEEE---ccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 1122367889999986 34457889987542 335666 66666 5554 34333599999999976543
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.40 E-value=15 Score=35.96 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=37.7
Q ss_pred CCCChHHHHHHHHhccCCcccceeeeecccccccccCChHHHH
Q 040165 1 MWSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFAL 43 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 43 (358)
+..||.++.. .||..|+.++++++++||+.|+.++++.....
T Consensus 108 i~~lp~el~~-~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSL-HILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcc-cccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 3579999999 99999999999999999999999998766554
No 60
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.21 E-value=0.51 Score=29.46 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=29.2
Q ss_pred eEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEe
Q 040165 241 VSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKI 286 (358)
Q Consensus 241 ~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i 286 (358)
...++.+++|+++++..........-++|.++. ...+|+++..+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~--~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDT--ETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEEC--CCCEEeecCCC
Confidence 355678999999998711112345667777776 33799887544
No 61
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.11 E-value=10 Score=33.35 Aligned_cols=214 Identities=12% Similarity=0.030 Sum_probs=118.8
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEe----------------EeCCCCCeEEEEEE--
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFG----------------YDSSTDDYKVLAVS-- 159 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~----------------~d~~~~~ykvv~~~-- 159 (358)
+--+-+|-|-+.......+==.||.||+....|.......+ .+.+| +|+.+.+++-+-+-
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph--giv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH--GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc--eEEECCCCCeeEecCcceeEEecCcccceEEeecccc
Confidence 34445666655423344455579999999998876544332 22222 23333222222111
Q ss_pred --ccceEEEEEEcCCCceEecccc-ccc---------ccccccCCCCceE--EECceEEEEeecCCCCCCCcEEEEEECC
Q 040165 160 --CLRVLLKVFSMKAFSWRDVHYN-LGV---------KLFYGTESPPKGC--LFNGALHWLVSGFHFGSQDPVIIAFDLA 225 (358)
Q Consensus 160 --~~~~~~~vyss~t~~W~~~~~~-~~~---------~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~~i~~fD~~ 225 (358)
.....--||+...+-|-.-..- .+. ..+........++ .-||.+|+-...+ .+|...|+.
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag------naiaridp~ 218 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG------NAIARIDPF 218 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc------cceEEcccc
Confidence 3345667888888888554321 110 0111111123344 4589999887665 589999999
Q ss_pred CCeeEEecCCCC--CCceEEE-EECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEE
Q 040165 226 EEKFCRVGEACH--PRSVSLG-VVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLC 302 (358)
Q Consensus 226 ~~~~~~i~~P~~--~~~~~l~-~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~ 302 (358)
+..-.+++.|.. .....+. ...|++..-+ . ....+ ...+-. ..+|.. +.++-.. ..-..+.
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~witt-----w-g~g~l--~rfdPs--~~sW~e-ypLPgs~-----arpys~r 282 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-----W-GTGSL--HRFDPS--VTSWIE-YPLPGSK-----ARPYSMR 282 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEec-----c-CCcee--eEeCcc--ccccee-eeCCCCC-----CCcceee
Confidence 998888888842 2222222 2366665554 1 22233 333331 146733 3333222 1133344
Q ss_pred EeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 303 TATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 303 ~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
+ -..|.|.+...+.+.+..||++|.+++.+ -++
T Consensus 283 V---D~~grVW~sea~agai~rfdpeta~ftv~-p~p 315 (353)
T COG4257 283 V---DRHGRVWLSEADAGAIGRFDPETARFTVL-PIP 315 (353)
T ss_pred e---ccCCcEEeeccccCceeecCcccceEEEe-cCC
Confidence 5 56777888766666799999999999988 554
No 62
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=91.04 E-value=2.1 Score=33.18 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=54.6
Q ss_pred cEEEEEECCCC--eeEEecCC--C-----C---C----CceEEEEECCeeEEEeeccccc----CCCCcEEEEEEccC-C
Q 040165 217 PVIIAFDLAEE--KFCRVGEA--C-----H---P----RSVSLGVVGGCLSLNVCCSNCV----DKTTDFELWVMKQY-G 275 (358)
Q Consensus 217 ~~i~~fD~~~~--~~~~i~~P--~-----~---~----~~~~l~~~~g~L~lv~~~~~~~----~~~~~~~vW~l~~~-~ 275 (358)
.+|+..|+..+ .++.|++| + . + ....+++.+|+|-+|....... .....+..|.|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 37889998875 67788888 1 1 1 3456788999999998654321 13568999999874 2
Q ss_pred CCCceeEEEEeecCCcc
Q 040165 276 VHSSWERLTKIDNDIMV 292 (358)
Q Consensus 276 ~~~~W~~~~~i~~~~~~ 292 (358)
...+|.+-++++...+.
T Consensus 86 ~~~~W~~d~~v~~~diw 102 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSDIW 102 (131)
T ss_pred CCCCEEEeEEEEhhhcc
Confidence 34799999999877653
No 63
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.47 E-value=5.4 Score=34.17 Aligned_cols=119 Identities=10% Similarity=0.131 Sum_probs=66.4
Q ss_pred EECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCC----C-C-ceEEEEE--CC--eeEEEeecccccCCCCcEE
Q 040165 198 LFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACH----P-R-SVSLGVV--GG--CLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 198 ~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~----~-~-~~~l~~~--~g--~L~lv~~~~~~~~~~~~~~ 267 (358)
.+||.+ .+... ..+...|+.|++|..+|.|.. . . ...++-. .+ ++..+..... ......++
T Consensus 3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~ 73 (230)
T TIGR01640 3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQ 73 (230)
T ss_pred ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEE
Confidence 468888 33332 379999999999999976621 1 1 1223221 12 2222221100 01235788
Q ss_pred EEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc----c-eEEEEECCCCeEEE-eeccc
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW----R-EFISCNLNERTLEE-IYRPN 339 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~----~-~l~~yd~~t~~~~~-v~~~~ 339 (358)
|+.+.. ++|..+...+.. .. .. ...+.+ +|.++...... . .++.||+++++|++ + ..+
T Consensus 74 Vys~~~----~~Wr~~~~~~~~-~~-~~--~~~v~~-----~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i-~~P 137 (230)
T TIGR01640 74 VYTLGS----NSWRTIECSPPH-HP-LK--SRGVCI-----NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI-PLP 137 (230)
T ss_pred EEEeCC----CCccccccCCCC-cc-cc--CCeEEE-----CCEEEEEEEECCCCCcEEEEEEEcccceEeeee-ecC
Confidence 888875 589887632211 11 11 123333 77777554321 1 49999999999995 6 655
No 64
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=89.80 E-value=0.77 Score=28.52 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=12.7
Q ss_pred eEEEEECCCCeEEEe
Q 040165 321 EFISCNLNERTLEEI 335 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v 335 (358)
.++.||+++++|+++
T Consensus 30 d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 30 DLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEETTTTEEEE-
T ss_pred CEEEEECCCCEEEEC
Confidence 599999999999998
No 65
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.72 E-value=13 Score=32.49 Aligned_cols=188 Identities=10% Similarity=-0.016 Sum_probs=87.5
Q ss_pred CCceEEEEcccccceec-cCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKK-LPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
....+.++|+.+++... ++.... ...+.+++..+ +++........+.+|+..+++= +.. .+...
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~--~l~~~~~~~~~l~~~d~~~~~~--~~~-----~~~~~ 115 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGPD------PELFALHPNGK--ILYIANEDDNLVTVIDIETRKV--LAE-----IPVGV 115 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCCC------ccEEEECCCCC--EEEEEcCCCCeEEEEECCCCeE--EeE-----eeCCC
Confidence 55678899998887644 332211 12345566544 2222212345788888877531 111 11111
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEE-EECCeeEEEeecccccCCCCcEEE
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLG-VVGGCLSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~-~~~g~L~lv~~~~~~~~~~~~~~v 268 (358)
....-.+.-+|.+.+.+... ...+..+|..+.+... +..+.. ...+. ..+|+..++.. .....+.+
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~-----~~~~~v~i 183 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTYEIVDNVLVDQR--PRFAEFTADGKELWVSS-----EIGGTVSV 183 (300)
T ss_pred CcceEEECCCCCEEEEEecC-----CCeEEEEeCCCCeEEEEEEcCCC--ccEEEECCCCCEEEEEc-----CCCCEEEE
Confidence 01111222356666555443 1245667887654422 222211 11222 23666555541 23457899
Q ss_pred EEEccCCCCCceeEEEEeecC--CccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEe
Q 040165 269 WVMKQYGVHSSWERLTKIDND--IMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
|.++.. ....++... ...........+++ ..+|+ +++.....+.+..||+++.+..+.
T Consensus 184 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~---s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 184 IDVATR------KVIKKITFEIPGVHPEAVQPVGIKL---TKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred EEcCcc------eeeeeeeecccccccccCCccceEE---CCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 988641 222233221 10000000112334 45666 444443333599999988776543
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.48 E-value=17 Score=33.37 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=100.4
Q ss_pred EcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC-ceEecccc---cccccccc--c-C
Q 040165 119 YNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF-SWRDVHYN---LGVKLFYG--T-E 191 (358)
Q Consensus 119 ~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~-~W~~~~~~---~~~~~~~~--~-~ 191 (358)
+++-+++...+-..+..- .....+.+|+. ++|-+++- .....+.+|....+ +=...... .+. -|.. . .
T Consensus 69 i~~~~g~L~~~~~~~~~g--~~p~~i~~~~~-g~~l~van-y~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~~~rq~~ 143 (345)
T PF10282_consen 69 IDPDTGTLTLLNSVPSGG--SSPCHIAVDPD-GRFLYVAN-YGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPNPDRQEG 143 (345)
T ss_dssp EETTTTEEEEEEEEEESS--SCEEEEEECTT-SSEEEEEE-TTTTEEEEEEECTTSEEEEEEEEEESEEE-ESSTTTTSS
T ss_pred ECCCcceeEEeeeeccCC--CCcEEEEEecC-CCEEEEEE-ccCCeEEEEEccCCcccceeeeecccCCC-CCccccccc
Confidence 455545554443332110 11344566665 44554443 34677888988774 22221100 000 0110 1 0
Q ss_pred CCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCe--eEE---ecCCCCCCceEEEEE-CCe-eEEEeecccccCC
Q 040165 192 SPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEK--FCR---VGEACHPRSVSLGVV-GGC-LSLNVCCSNCVDK 262 (358)
Q Consensus 192 ~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~---i~~P~~~~~~~l~~~-~g~-L~lv~~~~~~~~~ 262 (358)
.....+.+ +|...|....+ .+.|..|++..+. ... +.+|....-..++-. +|+ +|++. ..
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~------e~ 212 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLG-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN------EL 212 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETT-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE------TT
T ss_pred ccceeEEECCCCCEEEEEecC-----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec------CC
Confidence 11122322 56655665554 3689999988765 533 455532222233332 555 55554 34
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCcccc-CceeeEEEEeeecCCCc-EEEEEcCcceEEEEEC--CCCeEEEe
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRY-HGSLVTLCTATGTDGGD-EIIMINKWREFISCNL--NERTLEEI 335 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~--~t~~~~~v 335 (358)
...+.++.++.. .+.++.+.+++...-... .....-+++ ..+|+ ||+.....+.+..|++ ++++++.+
T Consensus 213 s~~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~i---spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 213 SNTVSVFDYDPS--DGSLTEIQTISTLPEGFTGENAPAEIAI---SPDGRFLYVSNRGSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp TTEEEEEEEETT--TTEEEEEEEEESCETTSCSSSSEEEEEE----TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred CCcEEEEeeccc--CCceeEEEEeeeccccccccCCceeEEE---ecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence 678999999842 257888877775422111 112444555 56677 7777766667888887 56788777
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.16 E-value=17 Score=32.94 Aligned_cols=140 Identities=6% Similarity=0.001 Sum_probs=72.9
Q ss_pred cceEEEEEEcCC-CceEecccccccccccccCCCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECC-CCeeEEe-cC
Q 040165 161 LRVLLKVFSMKA-FSWRDVHYNLGVKLFYGTESPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLA-EEKFCRV-GE 234 (358)
Q Consensus 161 ~~~~~~vyss~t-~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~-~~~~~~i-~~ 234 (358)
....+.+|+..+ ++++.+.. .+.. .....+.+ +|. +|.-... ...|.+||+. +++++.+ ..
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~-----~~~~--~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQV-----VDVP--GQVQPMVISPDKRHLYVGVRP------EFRVLSYRIADDGALTFAAES 76 (330)
T ss_pred CCCCEEEEEECCCCceeeeeE-----EecC--CCCccEEECCCCCEEEEEECC------CCcEEEEEECCCCceEEeeee
Confidence 345677888764 57776654 3221 12223333 465 5554433 2578888886 4566655 23
Q ss_pred CCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-E
Q 040165 235 ACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-E 312 (358)
Q Consensus 235 P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i 312 (358)
|.......++.. +|+..+++ ......+.+|.+++++. ....+..+.... ....+++ ..+|+ +
T Consensus 77 ~~~~~p~~i~~~~~g~~l~v~-----~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~------~~~~~~~---~p~g~~l 140 (330)
T PRK11028 77 PLPGSPTHISTDHQGRFLFSA-----SYNANCVSVSPLDKDGI--PVAPIQIIEGLE------GCHSANI---DPDNRTL 140 (330)
T ss_pred cCCCCceEEEECCCCCEEEEE-----EcCCCeEEEEEECCCCC--CCCceeeccCCC------cccEeEe---CCCCCEE
Confidence 322212344443 66655554 22357899999975331 222222222110 0222344 44565 6
Q ss_pred EEEEcCcceEEEEECCC
Q 040165 313 IIMINKWREFISCNLNE 329 (358)
Q Consensus 313 ~~~~~~~~~l~~yd~~t 329 (358)
++...+.+.+..||+++
T Consensus 141 ~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSD 157 (330)
T ss_pred EEeeCCCCEEEEEEECC
Confidence 66665555699999876
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.68 E-value=8.7 Score=35.98 Aligned_cols=112 Identities=9% Similarity=0.062 Sum_probs=64.2
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEe-cCC---CC-----CCceEEEEECCeeEEEeecccccCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRV-GEA---CH-----PRSVSLGVVGGCLSLNVCCSNCVDK 262 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i-~~P---~~-----~~~~~l~~~~g~L~lv~~~~~~~~~ 262 (358)
..++..+|.+|.....+ .+.++|..++ .|+.- .-. .. .....++..+|++++.. .
T Consensus 63 ~sPvv~~~~vy~~~~~g-------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-----~-- 128 (394)
T PRK11138 63 LHPAVAYNKVYAADRAG-------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-----E-- 128 (394)
T ss_pred eccEEECCEEEEECCCC-------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-----C--
Confidence 35688999999987664 7999998754 56542 111 00 01123556688887655 1
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
... +..++....+..|+... +-.. ...|... ++.|++...+. .++.+|++|++..+-
T Consensus 129 ~g~--l~ald~~tG~~~W~~~~--~~~~------~ssP~v~-----~~~v~v~~~~g-~l~ald~~tG~~~W~ 185 (394)
T PRK11138 129 KGQ--VYALNAEDGEVAWQTKV--AGEA------LSRPVVS-----DGLVLVHTSNG-MLQALNESDGAVKWT 185 (394)
T ss_pred CCE--EEEEECCCCCCcccccC--CCce------ecCCEEE-----CCEEEEECCCC-EEEEEEccCCCEeee
Confidence 233 44454322346886642 1111 1334443 45566654444 499999999876654
No 69
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.26 E-value=21 Score=32.81 Aligned_cols=168 Identities=7% Similarity=0.037 Sum_probs=91.8
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc--eEecccccccccccccCCCCceEE-ECce-EEEEeecCCCCCCC
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS--WRDVHYNLGVKLFYGTESPPKGCL-FNGA-LHWLVSGFHFGSQD 216 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~~~~v~-~~G~-lywl~~~~~~~~~~ 216 (358)
...+.++|..+ |-.+.- .....+.+|+...+. ...... ..++.+. ..+..++ -+|+ +|......
T Consensus 146 ~H~v~~~pdg~-~v~v~d-lG~D~v~~~~~~~~~~~l~~~~~---~~~~~G~-GPRh~~f~pdg~~~Yv~~e~s------ 213 (345)
T PF10282_consen 146 PHQVVFSPDGR-FVYVPD-LGADRVYVYDIDDDTGKLTPVDS---IKVPPGS-GPRHLAFSPDGKYAYVVNELS------ 213 (345)
T ss_dssp EEEEEE-TTSS-EEEEEE-TTTTEEEEEEE-TTS-TEEEEEE---EECSTTS-SEEEEEE-TTSSEEEEEETTT------
T ss_pred ceeEEECCCCC-EEEEEe-cCCCEEEEEEEeCCCceEEEeec---cccccCC-CCcEEEEcCCcCEEEEecCCC------
Confidence 55667777654 333332 356788899887655 544332 0122211 1122222 2554 66665443
Q ss_pred cEEEEEECC--CCeeEEe----cCCC--CC--CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEE
Q 040165 217 PVIIAFDLA--EEKFCRV----GEAC--HP--RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTK 285 (358)
Q Consensus 217 ~~i~~fD~~--~~~~~~i----~~P~--~~--~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~ 285 (358)
..|.+|+.. +.+++.+ .+|. .. .-..+... +|+...+. .+....+.++.++... +.-+++..
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-----nr~~~sI~vf~~d~~~--g~l~~~~~ 286 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-----NRGSNSISVFDLDPAT--GTLTLVQT 286 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-----ECTTTEEEEEEECTTT--TTEEEEEE
T ss_pred CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-----eccCCEEEEEEEecCC--CceEEEEE
Confidence 467777766 6677665 2332 11 23445554 67655555 2456789999996532 45666666
Q ss_pred eecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEE--ECCCCeEEEe
Q 040165 286 IDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISC--NLNERTLEEI 335 (358)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~y--d~~t~~~~~v 335 (358)
++... ...+-+.+ ..+|+ |++.....+.+..| |.+|++++.+
T Consensus 287 ~~~~G-----~~Pr~~~~---s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 287 VPTGG-----KFPRHFAF---SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEESS-----SSEEEEEE----TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EeCCC-----CCccEEEE---eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 66532 11344555 56777 66666555546666 6679999888
No 70
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=88.21 E-value=2.1 Score=26.60 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=25.6
Q ss_pred CceEEEEeecCC-CCCCCcEEEEEECCCCeeEEe-cCC
Q 040165 200 NGALHWLVSGFH-FGSQDPVIIAFDLAEEKFCRV-GEA 235 (358)
Q Consensus 200 ~G~lywl~~~~~-~~~~~~~i~~fD~~~~~~~~i-~~P 235 (358)
++.+|..++... .......+..||+.+.+|+.+ +.|
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCC
Confidence 467777777652 222345789999999999998 444
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.56 E-value=18 Score=31.24 Aligned_cols=113 Identities=8% Similarity=0.002 Sum_probs=68.7
Q ss_pred eEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEE--ECCeeEEEeecccccCCCCcEEEEEE
Q 040165 196 GCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGV--VGGCLSLNVCCSNCVDKTTDFELWVM 271 (358)
Q Consensus 196 ~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~--~~g~L~lv~~~~~~~~~~~~~~vW~l 271 (358)
+++. +|.|||..... ..|..+|+.+++...+..|. ...++. .+|+|++.. . ..+.+..+
T Consensus 5 p~~d~~~g~l~~~D~~~------~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~-----~---~~~~~~d~ 67 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG------GRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVAD-----S---GGIAVVDP 67 (246)
T ss_dssp EEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEE-----T---TCEEEEET
T ss_pred eEEECCCCEEEEEEcCC------CEEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEE-----c---CceEEEec
Confidence 3444 69999998765 58999999999998887774 222333 377777776 2 23443422
Q ss_pred ccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc--------ceEEEEECCCCeEEEe
Q 040165 272 KQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW--------REFISCNLNERTLEEI 335 (358)
Q Consensus 272 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--------~~l~~yd~~t~~~~~v 335 (358)
+. ++++.......... ......-+++ ..+|++++..... ..++.++++ ++.+.+
T Consensus 68 ~~----g~~~~~~~~~~~~~--~~~~~ND~~v---d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 68 DT----GKVTVLADLPDGGV--PFNRPNDVAV---DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TT----TEEEEEEEEETTCS--CTEEEEEEEE----TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CC----CcEEEEeeccCCCc--ccCCCceEEE---cCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 22 57877777742210 0111333455 5678888865432 248999999 666665
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.07 E-value=29 Score=32.16 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=61.9
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEE
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVM 271 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l 271 (358)
..++..+|.+|.....+ .+.++|..++ .|+.- .+. ....+..+|++++.. ....+..+..
T Consensus 235 ~~p~~~~~~vy~~~~~g-------~l~a~d~~tG~~~W~~~-~~~---~~~p~~~~~~vyv~~-------~~G~l~~~d~ 296 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQG-------RVAALDLRSGRVLWKRD-ASS---YQGPAVDDNRLYVTD-------ADGVVVALDR 296 (377)
T ss_pred CccEEECCEEEEEEcCC-------EEEEEECCCCcEEEeec-cCC---ccCceEeCCEEEEEC-------CCCeEEEEEC
Confidence 45667889999877664 7999998865 45432 221 122344577776665 2234555554
Q ss_pred ccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 272 KQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 272 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
++ .+..|.... +.... ...|... ++.|++...+. .++.+|.++++...-+.+
T Consensus 297 ~t--G~~~W~~~~-~~~~~------~ssp~i~-----g~~l~~~~~~G-~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 297 RS--GSELWKNDE-LKYRQ------LTAPAVV-----GGYLVVGDFEG-YLHWLSREDGSFVARLKT 348 (377)
T ss_pred CC--CcEEEcccc-ccCCc------cccCEEE-----CCEEEEEeCCC-EEEEEECCCCCEEEEEEc
Confidence 43 224565421 11111 1233333 35566655554 499999998877554344
No 73
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=85.71 E-value=2.8 Score=31.03 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=31.1
Q ss_pred CceEEEEccccc-ceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE
Q 040165 113 CKDFFIYNPSTR-AHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS 159 (358)
Q Consensus 113 ~~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 159 (358)
...++++||.|+ .|.+.-+. ...+.+-+|+..+.|+||...
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKH------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCCCC------ceeEEEEecCCCcEEEEEEec
Confidence 446889999986 88766532 126778889999999999864
No 74
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.57 E-value=28 Score=31.60 Aligned_cols=120 Identities=8% Similarity=0.015 Sum_probs=72.9
Q ss_pred eEEEEeecCCCCCCCcEEEEEECC--CCeeEEe-cCCCCC-CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCC
Q 040165 202 ALHWLVSGFHFGSQDPVIIAFDLA--EEKFCRV-GEACHP-RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGV 276 (358)
Q Consensus 202 ~lywl~~~~~~~~~~~~i~~fD~~--~~~~~~i-~~P~~~-~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~ 276 (358)
.||.....+.. ..|.+|... +++.+.+ ..+..+ ....+.+. +|++.++. ......+.|.-++++|
T Consensus 53 ~LY~v~~~~~~----ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~A-----nY~~g~v~v~p~~~dG- 122 (346)
T COG2706 53 HLYVVNEPGEE----GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVA-----NYHSGSVSVYPLQADG- 122 (346)
T ss_pred EEEEEEecCCc----CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEE-----EccCceEEEEEcccCC-
Confidence 58888777542 466666665 4788887 334322 23566665 66555555 3467899999998754
Q ss_pred CCceeEEEEeecCCccccCce----eeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEe
Q 040165 277 HSSWERLTKIDNDIMVRYHGS----LVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 277 ~~~W~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.-|..+..+......++.+. .....+ ..+|+ |+...-+.++++.|+++.++.+..
T Consensus 123 -~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~---tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 123 -SLQPVVQVVKHTGSGPHERQESPHVHSANF---TPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred -ccccceeeeecCCCCCCccccCCccceeee---CCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 46666555543322111111 233344 45666 555555555799999999988877
No 75
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=85.07 E-value=23 Score=30.64 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=81.4
Q ss_pred CceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCC--C-C--------C-C
Q 040165 173 FSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEA--C-H--------P-R 239 (358)
Q Consensus 173 ~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P--~-~--------~-~ 239 (358)
+.|...-. +|... .....|..+|.+|...... ..|+.||+.++.- ....+| . . . .
T Consensus 56 ~~~~~~~~-----lp~~~-~gTg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~s 123 (249)
T KOG3545|consen 56 GRKAEKYR-----LPYSW-DGTGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHS 123 (249)
T ss_pred cCcceEEe-----CCCCc-cccceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCc
Confidence 45655544 55544 3467789999999988665 5899999998543 233445 1 1 1 4
Q ss_pred ceEEEEECCeeEEEeecccccCCCCcEEEEEEccC--CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc
Q 040165 240 SVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQY--GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN 317 (358)
Q Consensus 240 ~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 317 (358)
.+.+++.+..|.++-... .....+.|-.|+.. .....|.- ....- ...-++ ...|.++....
T Consensus 124 diD~avDE~GLWviYat~---~~~g~iv~skLdp~tl~~e~tW~T----~~~k~------~~~~aF---~iCGvLY~v~S 187 (249)
T KOG3545|consen 124 DIDLAVDENGLWVIYATP---ENAGTIVLSKLDPETLEVERTWNT----TLPKR------SAGNAF---MICGVLYVVHS 187 (249)
T ss_pred cccceecccceeEEeccc---ccCCcEEeeccCHHHhheeeeecc----ccCCC------CcCceE---EEeeeeEEEec
Confidence 578889888888887543 23456667777752 22245522 11110 011111 11355555442
Q ss_pred Cc---ceE-EEEECCCCeEEEeeccc
Q 040165 318 KW---REF-ISCNLNERTLEEIYRPN 339 (358)
Q Consensus 318 ~~---~~l-~~yd~~t~~~~~v~~~~ 339 (358)
.. ..+ +.||..+++-+.+ .++
T Consensus 188 ~~~~~~~i~yaydt~~~~~~~~-~ip 212 (249)
T KOG3545|consen 188 YNCTHTQISYAYDTTTGTQERI-DLP 212 (249)
T ss_pred cccCCceEEEEEEcCCCceecc-ccc
Confidence 21 123 7999999999888 765
No 76
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=84.25 E-value=25 Score=29.85 Aligned_cols=189 Identities=15% Similarity=0.095 Sum_probs=93.7
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC--ceEe-c
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF--SWRD-V 178 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~--~W~~-~ 178 (358)
.+|.++.. .....++.+|+.||+...--..+..... . +....=+++... ....+..++..++ .|+. .
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~------~~~~~~~v~v~~-~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPISG--A------PVVDGGRVYVGT-SDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGGS--G------EEEETTEEEEEE-TTSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEE-cCCCEEEEEECCCCCEEEEeeccccccc--e------eeeccccccccc-ceeeeEecccCCcceeeeecc
Confidence 67777765 5788899999999886543332221111 1 000111222221 2236777887776 6983 4
Q ss_pred ccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCe--eEE-ecCCCCC--------CceEEEEEC
Q 040165 179 HYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEK--FCR-VGEACHP--------RSVSLGVVG 247 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~-i~~P~~~--------~~~~l~~~~ 247 (358)
... .+............++.+|..... ..|.++|+.+++ |.. +..|... ....+...+
T Consensus 105 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 105 TSS----PPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp -SS----CTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred ccc----cccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence 320 011111223333445666665544 389999988764 443 2333111 123334446
Q ss_pred CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEEC
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNL 327 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~ 327 (358)
|.+++... ....+.+ .++. ....|.+ +... ...... ..++.|++...+. .++.+|+
T Consensus 174 ~~v~~~~~------~g~~~~~-d~~t--g~~~w~~----~~~~-------~~~~~~---~~~~~l~~~~~~~-~l~~~d~ 229 (238)
T PF13360_consen 174 GRVYVSSG------DGRVVAV-DLAT--GEKLWSK----PISG-------IYSLPS---VDGGTLYVTSSDG-RLYALDL 229 (238)
T ss_dssp TEEEEECC------TSSEEEE-ETTT--TEEEEEE----CSS--------ECECEE---CCCTEEEEEETTT-EEEEEET
T ss_pred CEEEEEcC------CCeEEEE-ECCC--CCEEEEe----cCCC-------ccCCce---eeCCEEEEEeCCC-EEEEEEC
Confidence 76666651 2222333 3332 1123521 1211 122122 3345466666444 5999999
Q ss_pred CCCeEEEe
Q 040165 328 NERTLEEI 335 (358)
Q Consensus 328 ~t~~~~~v 335 (358)
+|++..+.
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 99987764
No 77
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.75 E-value=43 Score=31.49 Aligned_cols=159 Identities=10% Similarity=0.006 Sum_probs=82.6
Q ss_pred CCCeEEEEEE-ccc-eEEEEEEcCCC-----ceEecccccccccccccCCC-CceEEECceEEEEeecCCCCCCCcEEEE
Q 040165 150 TDDYKVLAVS-CLR-VLLKVFSMKAF-----SWRDVHYNLGVKLFYGTESP-PKGCLFNGALHWLVSGFHFGSQDPVIIA 221 (358)
Q Consensus 150 ~~~ykvv~~~-~~~-~~~~vyss~t~-----~W~~~~~~~~~~~~~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~i~~ 221 (358)
.++|.++... ... ..+.+.+..++ .|+.+.. +.. .. ...-..++.+|+++..+. ....|+.
T Consensus 237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~------~~~--~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~ 305 (414)
T PF02897_consen 237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP------RED--GVEYYVDHHGDRLYILTNDDA---PNGRLVA 305 (414)
T ss_dssp TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE------SSS--S-EEEEEEETTEEEEEE-TT----TT-EEEE
T ss_pred cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC------CCC--ceEEEEEccCCEEEEeeCCCC---CCcEEEE
Confidence 4567666654 222 55666666654 6776643 110 11 222345778888877542 2369999
Q ss_pred EECCCCe---eEEecCC-CCC-CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCc
Q 040165 222 FDLAEEK---FCRVGEA-CHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHG 296 (358)
Q Consensus 222 fD~~~~~---~~~i~~P-~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 296 (358)
.|+.+.. |..+-+| ..+ ....+...++.|.+.... .....+.++.++ ..|... .+++...
T Consensus 306 ~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~----~~~~~l~v~~~~-----~~~~~~-~~~~p~~----- 370 (414)
T PF02897_consen 306 VDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE----NGSSRLRVYDLD-----DGKESR-EIPLPEA----- 370 (414)
T ss_dssp EETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE----TTEEEEEEEETT------TEEEE-EEESSSS-----
T ss_pred ecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE----CCccEEEEEECC-----CCcEEe-eecCCcc-----
Confidence 9999765 6644333 332 233445568888877731 113445555444 134333 3332221
Q ss_pred eeeEEEEeeecCCCcEEEEEcCc---ceEEEEECCCCeEEEe
Q 040165 297 SLVTLCTATGTDGGDEIIMINKW---REFISCNLNERTLEEI 335 (358)
Q Consensus 297 ~~~~~~~~~~~~~g~i~~~~~~~---~~l~~yd~~t~~~~~v 335 (358)
....++-.......++|..... ..++.||+++++.+.+
T Consensus 371 -g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 371 -GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp -SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred -eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 2222221123333366654332 2699999999999887
No 78
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=82.04 E-value=3.6 Score=38.96 Aligned_cols=157 Identities=10% Similarity=0.032 Sum_probs=86.8
Q ss_pred CceEeccccc--ccc--cccccCCCCceEEECc--eEEEEeecCCCCCCCcEEEEEECCCCeeEEec----CCCCC--Cc
Q 040165 173 FSWRDVHYNL--GVK--LFYGTESPPKGCLFNG--ALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG----EACHP--RS 240 (358)
Q Consensus 173 ~~W~~~~~~~--~~~--~~~~~~~~~~~v~~~G--~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~----~P~~~--~~ 240 (358)
-.|.++.... ++. .....++++..|+..| ++|-.++-..... ..-..+|....+.|+.|. .|..+ ..
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 4798776421 110 1112334577888888 8998876542211 124577889999999984 45222 23
Q ss_pred eEEEEECCeeEEEeecccccC---CCCcEEEEEEccCCCCCceeEEEEeecCCcccc-CceeeEEEEeeecCCCcEEEEE
Q 040165 241 VSLGVVGGCLSLNVCCSNCVD---KTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY-HGSLVTLCTATGTDGGDEIIMI 316 (358)
Q Consensus 241 ~~l~~~~g~L~lv~~~~~~~~---~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~g~i~~~~ 316 (358)
+.+-++..+||+.+.-..... ...+-++|+.|. ....|... +++...-.+. .-+-..+++ +.+.|-|++.+
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi--~~~~W~~l-s~dt~~dGGP~~vfDHqM~V--d~~k~~iyVfG 392 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDI--DTNTWMLL-SEDTAADGGPKLVFDHQMCV--DSEKHMIYVFG 392 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEec--CCceeEEe-cccccccCCcceeecceeeE--ecCcceEEEec
Confidence 334455667888763221111 145778999987 34789654 3333221110 011222333 35444455543
Q ss_pred cC--------cceEEEEECCCCeEEEe
Q 040165 317 NK--------WREFISCNLNERTLEEI 335 (358)
Q Consensus 317 ~~--------~~~l~~yd~~t~~~~~v 335 (358)
+. ...+|.||.....|+..
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHH
Confidence 21 11499999999999877
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.22 E-value=49 Score=30.56 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=42.4
Q ss_pred ceEEEEEEcCCC--ceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEecCCCC
Q 040165 162 RVLLKVFSMKAF--SWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRVGEACH 237 (358)
Q Consensus 162 ~~~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~P~~ 237 (358)
...+..|+.+++ .|+.-.. .....+..+|.+|.....+ .+.++|..++ .|+.-.++..
T Consensus 250 ~g~l~a~d~~tG~~~W~~~~~-----------~~~~p~~~~~~vyv~~~~G-------~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 250 QGRVAALDLRSGRVLWKRDAS-----------SYQGPAVDDNRLYVTDADG-------VVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CCEEEEEECCCCcEEEeeccC-----------CccCceEeCCEEEEECCCC-------eEEEEECCCCcEEEccccccCC
Confidence 445777777766 4755321 1234556789999876553 8999998765 5654333311
Q ss_pred CCceEEEEECCeeEEEe
Q 040165 238 PRSVSLGVVGGCLSLNV 254 (358)
Q Consensus 238 ~~~~~l~~~~g~L~lv~ 254 (358)
........++.|++..
T Consensus 312 -~~ssp~i~g~~l~~~~ 327 (377)
T TIGR03300 312 -QLTAPAVVGGYLVVGD 327 (377)
T ss_pred -ccccCEEECCEEEEEe
Confidence 1112233466666654
No 80
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.93 E-value=54 Score=30.31 Aligned_cols=115 Identities=11% Similarity=-0.006 Sum_probs=67.9
Q ss_pred eEEECceEEEEeecCCCCCCCcEEEEEECCCCe--eEEecCC-CCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEc
Q 040165 196 GCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEK--FCRVGEA-CHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMK 272 (358)
Q Consensus 196 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P-~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~ 272 (358)
.++.+|++|.-...+ .|.++|+.+.+ |+.-... .......+...+|+|++-. . .. .++.++
T Consensus 64 ~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~-----~-~g---~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGS-----W-DG---KLYALD 127 (370)
T ss_pred cEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEec-----c-cc---eEEEEE
Confidence 589999999985554 79999999876 7654332 1111122233388876665 2 12 778888
Q ss_pred cCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 273 QYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 273 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
+......|.....-. .....+.. ..++.+++...+. .++..|.+|++..+-++.
T Consensus 128 ~~~G~~~W~~~~~~~-------~~~~~~~v----~~~~~v~~~s~~g-~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 128 ASTGTLVWSRNVGGS-------PYYASPPV----VGDGTVYVGTDDG-HLYALNADTGTLKWTYET 181 (370)
T ss_pred CCCCcEEEEEecCCC-------eEEecCcE----EcCcEEEEecCCC-eEEEEEccCCcEEEEEec
Confidence 732336776654331 11122222 2345566654333 499999998877665333
No 81
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=78.17 E-value=9 Score=35.86 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=44.1
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEe
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
...++|+.++.. .=.++.+|.+..++ ..-..+ ..+|. +++.....+.+|.||+++.+.+++
T Consensus 234 d~~lrifqvDGk----~N~~lqS~~l~~fP-----i~~a~f---~p~G~~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 234 DGTLRIFQVDGK----VNPKLQSIHLEKFP-----IQKAEF---APNGHSVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred CCcEEEEEecCc----cChhheeeeeccCc-----cceeee---cCCCceEEEecccceEEEEeeccccccccc
Confidence 468999999862 22277777776543 344455 56787 777666666799999999999998
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.63 E-value=61 Score=31.81 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=65.7
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCC--CeeEEe-cCCCC--------CCceEEEEECCeeEEEeecccccCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE--EKFCRV-GEACH--------PRSVSLGVVGGCLSLNVCCSNCVDK 262 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~i-~~P~~--------~~~~~l~~~~g~L~lv~~~~~~~~~ 262 (358)
..++..+|.+|.....+ .|.++|..+ +.|+.- ..|.. .....++..+|++++.+ .
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-----~-- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-----L-- 128 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-----C--
Confidence 56788899999976653 799999886 467653 33311 01123455678877665 1
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEe
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEI 335 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v 335 (358)
.. .+..++....+..|..... +... .......|+.. +|.|++.... ...++.||.+|++..+-
T Consensus 129 dg--~l~ALDa~TGk~~W~~~~~-~~~~--~~~~tssP~v~-----~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 129 DA--RLVALDAKTGKVVWSKKNG-DYKA--GYTITAAPLVV-----KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CC--EEEEEECCCCCEEeecccc-cccc--cccccCCcEEE-----CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 12 3456654333467765321 1110 01111344444 4556554321 12599999999977664
No 83
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=75.63 E-value=5.4 Score=37.86 Aligned_cols=135 Identities=10% Similarity=-0.051 Sum_probs=79.8
Q ss_pred EcccccceeccCCCCCCCC----CC---ceEEEeEeCCCCCeEEEEEE---ccceEEEEEEcCCCceEeccccccccccc
Q 040165 119 YNPSTRAHKKLPDPDISLG----SP---YLYGFGYDSSTDDYKVLAVS---CLRVLLKVFSMKAFSWRDVHYNLGVKLFY 188 (358)
Q Consensus 119 ~NP~T~~~~~lP~~~~~~~----~~---~~~~~~~d~~~~~ykvv~~~---~~~~~~~vyss~t~~W~~~~~~~~~~~~~ 188 (358)
=-|.+-.|..+|+...... +. ....|++++.++.-.+.+.. .....+++|+-+.+.|..+... ...|.
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~--t~~PG 311 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRD--TEGPG 311 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecC--CCCCc
Confidence 3567778888876652211 11 14567788887765555543 4557799999999999987651 11232
Q ss_pred ccCCCCceEE--ECceEEEEeecCCC-----CCCCcEEEEEECCCCeeEEecCC--CCC-----CceEEEEECCe--eEE
Q 040165 189 GTESPPKGCL--FNGALHWLVSGFHF-----GSQDPVIIAFDLAEEKFCRVGEA--CHP-----RSVSLGVVGGC--LSL 252 (358)
Q Consensus 189 ~~~~~~~~v~--~~G~lywl~~~~~~-----~~~~~~i~~fD~~~~~~~~i~~P--~~~-----~~~~l~~~~g~--L~l 252 (358)
...+ +..|. ..-++|-++..-.. -..+.-+..||..+..|..+..- .++ ...++++.+.+ ||+
T Consensus 312 ~RsC-HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyV 390 (723)
T KOG2437|consen 312 ARSC-HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYV 390 (723)
T ss_pred chhh-hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEE
Confidence 2211 22222 23477777643211 12245789999999999998655 111 22345555444 888
Q ss_pred Eeec
Q 040165 253 NVCC 256 (358)
Q Consensus 253 v~~~ 256 (358)
++++
T Consensus 391 fGGr 394 (723)
T KOG2437|consen 391 FGGR 394 (723)
T ss_pred ecCe
Confidence 8764
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=75.06 E-value=0.62 Score=43.03 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=33.8
Q ss_pred CChHHHHHHHHhccCCcccceeeeecccccccccCChH
Q 040165 3 SIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPK 40 (358)
Q Consensus 3 ~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~ 40 (358)
.||.|++. +||+-|..+++.|++.+|+.|+-+.-+..
T Consensus 74 ~LPpEl~l-kvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLL-KVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHH-HHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 69999999 99999999999999999999998876543
No 85
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=72.45 E-value=65 Score=28.00 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=88.0
Q ss_pred CCceEEEEcccccceec-cCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKK-LPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
....+.++|..+++... ++.. .. ...+.+++.. .+-++.. .....+.+|+.+++.-.. . .+...
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~-~~-----~~~~~~~~dg-~~l~~~~-~~~~~~~~~d~~~~~~~~--~-----~~~~~ 157 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVG-VE-----PEGMAVSPDG-KIVVNTS-ETTNMAHFIDTKTYEIVD--N-----VLVDQ 157 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCC-CC-----cceEEECCCC-CEEEEEe-cCCCeEEEEeCCCCeEEE--E-----EEcCC
Confidence 45678899988765432 2211 11 1234555543 2322222 222345556665543211 1 11110
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecC--C-CC--C-CceEEEE-ECCeeEEEeecccccCC
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGE--A-CH--P-RSVSLGV-VGGCLSLNVCCSNCVDK 262 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~--P-~~--~-~~~~l~~-~~g~L~lv~~~~~~~~~ 262 (358)
....-...-+|...+..... ...+..||+.+.+. ..+.. + .. . ....+.. -+|+..++. ...
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~-----~~~ 227 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEI-----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA-----LGP 227 (300)
T ss_pred CccEEEECCCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE-----cCC
Confidence 01111122356544444332 14788999988654 33332 2 11 1 1123333 366654444 123
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEE-EcCcceEEEEECCCCeE-EEeeccc
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIM-INKWREFISCNLNERTL-EEIYRPN 339 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~~~~~~l~~yd~~t~~~-~~v~~~~ 339 (358)
...+.+|.++ +|..+..+.... ....+++ ..+|+.++. ....+.+..||+++.+. +.+ .+.
T Consensus 228 ~~~i~v~d~~------~~~~~~~~~~~~------~~~~~~~---~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~~ 290 (300)
T TIGR03866 228 ANRVAVVDAK------TYEVLDYLLVGQ------RVWQLAF---TPDEKYLLTTNGVSNDVSVIDVAALKVIKSI-KVG 290 (300)
T ss_pred CCeEEEEECC------CCcEEEEEEeCC------CcceEEE---CCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-Ecc
Confidence 3568888654 344444433221 1334555 556774444 33333599999999885 555 443
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=70.25 E-value=97 Score=29.14 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=70.5
Q ss_pred eEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEEEEccC
Q 040165 196 GCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQY 274 (358)
Q Consensus 196 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~ 274 (358)
.++=||.++-.+... ..+=.||+.+.. ..-.+|.+. ....+.-.++.-++++.. +...+.+|.|...
T Consensus 354 ~fHpDgLifgtgt~d------~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~a-----dd~~V~lwDLRKl 421 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPD------GVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAA-----DDGSVKLWDLRKL 421 (506)
T ss_pred eEcCCceEEeccCCC------ceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEe-----cCCeEEEEEehhh
Confidence 344577777766654 467789999887 566888543 334455556666666632 3345999999762
Q ss_pred CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEE-EEEcCcceEEEEECCCCeEEEeecc
Q 040165 275 GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEI-IMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 275 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~-~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
. ...++.+.... ....+.+ -..|..+ +...+- .+|.|+-.++.|+++...
T Consensus 422 ~------n~kt~~l~~~~----~v~s~~f---D~SGt~L~~~g~~l-~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 422 K------NFKTIQLDEKK----EVNSLSF---DQSGTYLGIAGSDL-QVYICKKKTKSWTEIKEL 472 (506)
T ss_pred c------ccceeeccccc----cceeEEE---cCCCCeEEeeccee-EEEEEecccccceeeehh
Confidence 1 22333333211 1344555 5566633 443333 588899999999998433
No 87
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=69.80 E-value=4.6 Score=24.99 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=16.6
Q ss_pred ceEEEEEEcCCCceEeccc
Q 040165 162 RVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~ 180 (358)
...+.+|++.+++|+.++.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~ 36 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGD 36 (49)
T ss_pred ecCEEEEECCCCEEEECCC
Confidence 4678999999999999966
No 88
>PF13854 Kelch_5: Kelch motif
Probab=69.12 E-value=12 Score=22.23 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=24.7
Q ss_pred CCCceEEECceEEEEeecCC-CCCCCcEEEEEECCC
Q 040165 192 SPPKGCLFNGALHWLVSGFH-FGSQDPVIIAFDLAE 226 (358)
Q Consensus 192 ~~~~~v~~~G~lywl~~~~~-~~~~~~~i~~fD~~~ 226 (358)
..+.++.+++.+|..++... .......+..+|+.+
T Consensus 6 ~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred cceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 45778889999999998762 222235677777764
No 89
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=68.58 E-value=1.4e+02 Score=30.89 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=25.3
Q ss_pred CCceEEECceEEEEeecCCCCCCCcEEEEEECCC--CeeEE
Q 040165 193 PPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE--EKFCR 231 (358)
Q Consensus 193 ~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~ 231 (358)
...++.++|++|..+..+ .+.++|..+ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence 366889999999987654 899999885 56765
No 90
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=68.28 E-value=28 Score=30.01 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=44.8
Q ss_pred CcEEEEEEccC----CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 264 TDFELWVMKQY----GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 264 ~~~~vW~l~~~----~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
..+.-|.-.+. +.+..|+.+..+....+. .....+++.++..+.|++..++.. ++..|++++++++.|+-+
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~e----vPeINam~ldP~enSi~~AgGD~~-~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVE----VPEINAMWLDPSENSILFAGGDGV-IYQVDLEDGRIQREYRGH 155 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCccc----CCccceeEeccCCCcEEEecCCeE-EEEEEecCCEEEEEEcCC
Confidence 45555664332 234678776555442221 122334444577777999887774 999999999999987554
No 91
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=66.39 E-value=31 Score=25.88 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=30.2
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS 159 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 159 (358)
..+.++||.|+.|.+.-..+.. ...+.+-.++..+.|+|++..
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~---ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQG---FSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCC---cceEEEEEcCCCCEEEEEEee
Confidence 3578899999998776442211 125667778888999999853
No 92
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=65.76 E-value=1.1e+02 Score=28.20 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=107.2
Q ss_pred EEEeecceEEEEEe-C-CceEEEEcccccceec-cCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcC-CC
Q 040165 98 IIGSCNGLVCMALH-G-CKDFFIYNPSTRAHKK-LPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMK-AF 173 (358)
Q Consensus 98 ~~~s~~Gll~~~~~-~-~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~-t~ 173 (358)
..-|-+|-.++..+ . ...+.|.|..+++... +|-+... ..|-.....|.+.++ ......++++ +|
T Consensus 110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~--------~vy~t~e~~~~~~~~---Dg~~~~v~~d~~g 178 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY--------HIFPTANDTFFMHCR---DGSLAKVGYGTKG 178 (352)
T ss_pred EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc--------EEEEecCCccEEEee---cCceEEEEecCCC
Confidence 55566664444224 3 6788899999998866 5553321 233333445555554 1222233332 23
Q ss_pred ceEeccccccccccc--c--cCCCCce--EEECceEEEEeecCCCCCCCcEEEEEECCCC------eeEEecCCC-----
Q 040165 174 SWRDVHYNLGVKLFY--G--TESPPKG--CLFNGALHWLVSGFHFGSQDPVIIAFDLAEE------KFCRVGEAC----- 236 (358)
Q Consensus 174 ~W~~~~~~~~~~~~~--~--~~~~~~~--v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~------~~~~i~~P~----- 236 (358)
+ ....+ .+. . ......+ .-.+|..+|.+.++ .|...|+++. .|..+..-.
T Consensus 179 ~-~~~~~-----~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 179 N-PKIKP-----TEVFHPEDEYLINHPAYSNKSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred c-eEEee-----eeeecCCccccccCCceEcCCCcEEEEecCC-------eEEEEecCCCcceecceeeecccccccccc
Confidence 3 22222 111 0 0001222 33479999999885 7888886543 344332210
Q ss_pred CCC---ceEEEEECCeeEEEeec-ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-
Q 040165 237 HPR---SVSLGVVGGCLSLNVCC-SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD- 311 (358)
Q Consensus 237 ~~~---~~~l~~~~g~L~lv~~~-~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~- 311 (358)
... .+.+..-+++||+.... .+.......=+||++|. .++..+.+|..... ...+++ ..+|+
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~vG~~------~~~iav---S~Dgkp 312 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIELGHE------IDSINV---SQDAKP 312 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeCCCc------eeeEEE---CCCCCe
Confidence 111 12222236777774411 10011123347899886 68999999997652 456667 77787
Q ss_pred EEEEEc-CcceEEEEECCCCeEEE
Q 040165 312 EIIMIN-KWREFISCNLNERTLEE 334 (358)
Q Consensus 312 i~~~~~-~~~~l~~yd~~t~~~~~ 334 (358)
.++... ..+.+..+|.++++.-+
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEe
Confidence 665544 33459999999986543
No 93
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.61 E-value=11 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=18.6
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE 226 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~ 226 (358)
...++.+|.+|.-+..+ .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 45578899999988875 899999875
No 94
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=65.23 E-value=43 Score=32.16 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=83.2
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECc-eEEEEeecCCCCCCCcEEEEEECCCCee--EEe--cCC-
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNG-ALHWLVSGFHFGSQDPVIIAFDLAEEKF--CRV--GEA- 235 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~--~~i--~~P- 235 (358)
-...++|.-.+++|-.-.. .++ +|.+ +...+..++| .+|.+++--+.+ .++=--|.+..-+| ..+ ..|
T Consensus 56 iDELHvYNTatnqWf~Pav-rGD-iPpg--cAA~GfvcdGtrilvFGGMvEYG--kYsNdLYELQasRWeWkrlkp~~p~ 129 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFAPAV-RGD-IPPG--CAAFGFVCDGTRILVFGGMVEYG--KYSNDLYELQASRWEWKRLKPKTPK 129 (830)
T ss_pred hhhhhhhccccceeecchh-cCC-CCCc--hhhcceEecCceEEEEccEeeec--cccchHHHhhhhhhhHhhcCCCCCC
Confidence 4568999999999965332 111 2221 2233444444 677776532211 12223344555555 444 122
Q ss_pred -----CCCCceEEEEECCeeEEEeecccccCC--------CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEE
Q 040165 236 -----CHPRSVSLGVVGGCLSLNVCCSNCVDK--------TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLC 302 (358)
Q Consensus 236 -----~~~~~~~l~~~~g~L~lv~~~~~~~~~--------~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~ 302 (358)
|.+........+.+-|++++-.|...+ ...+-+-.|.....--.|..-..-.+...++ .+-.+
T Consensus 130 nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR----ESHTA 205 (830)
T KOG4152|consen 130 NGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR----ESHTA 205 (830)
T ss_pred CCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc----cccee
Confidence 333223444557888888875443221 1234444444321123565543322222111 33334
Q ss_pred EeeecCCC---cEEEEEcCc----ceEEEEECCCCeEEEeeccc
Q 040165 303 TATGTDGG---DEIIMINKW----REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 303 ~~~~~~~g---~i~~~~~~~----~~l~~yd~~t~~~~~v~~~~ 339 (358)
++++.++. ++++..+.. +.+...|++|-.|.+. .+.
T Consensus 206 ViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp-~~~ 248 (830)
T KOG4152|consen 206 VIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKP-SLS 248 (830)
T ss_pred EEEEeccCCcceEEEEcccccccccceeEEecceeecccc-ccc
Confidence 44434443 255544322 2599999999999998 654
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=64.67 E-value=1.3e+02 Score=28.54 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=62.1
Q ss_pred EEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCC--CCCceE-EEEE-CCeeEEEeecccccCCCCcEEEEEE
Q 040165 197 CLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEAC--HPRSVS-LGVV-GGCLSLNVCCSNCVDKTTDFELWVM 271 (358)
Q Consensus 197 v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~--~~~~~~-l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l 271 (358)
.+-+|. .-+.++.. .++.+||+.+.+.+.+..|. .+..+. ..+. ++...++. .....|.+-..
T Consensus 265 f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~------G~~G~I~lLha 332 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA------GNNGHIHLLHA 332 (514)
T ss_pred ecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc------ccCceEEeehh
Confidence 344676 44444332 58999999999999998883 221222 2222 44433333 13344554444
Q ss_pred ccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEe
Q 040165 272 KQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 272 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.. ++|.--..|+-. ..-+.+ ..+|+ |+....+. .++.+|++++.....
T Consensus 333 kT----~eli~s~KieG~--------v~~~~f---sSdsk~l~~~~~~G-eV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 333 KT----KELITSFKIEGV--------VSDFTF---SSDSKELLASGGTG-EVYVWNLRQNSCLHR 381 (514)
T ss_pred hh----hhhhheeeeccE--------EeeEEE---ecCCcEEEEEcCCc-eEEEEecCCcceEEE
Confidence 33 455444444321 344555 55667 44544444 499999999976655
No 96
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=63.44 E-value=38 Score=29.43 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=54.6
Q ss_pred EEEEEECCCCeeEEecCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEE-EeecCCccccC
Q 040165 218 VIIAFDLAEEKFCRVGEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLT-KIDNDIMVRYH 295 (358)
Q Consensus 218 ~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~-~i~~~~~~~~~ 295 (358)
.-..||+.+.+++.+..+.+- +.-...-.+|+|..+++... ....++++.....+....|.... .|....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R----- 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGR----- 118 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCC-----
Confidence 456799999999988877322 11122234899988886532 34567776654422335787754 444433
Q ss_pred ceeeEEEEeeecCCCcEEEEEcCc
Q 040165 296 GSLVTLCTATGTDGGDEIIMINKW 319 (358)
Q Consensus 296 ~~~~~~~~~~~~~~g~i~~~~~~~ 319 (358)
+.|-... ..+|+|+++.+..
T Consensus 119 --WYpT~~~--L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 119 --WYPTATT--LPDGRVLIVGGSN 138 (243)
T ss_pred --ccccceE--CCCCCEEEEeCcC
Confidence 4444431 6788888877654
No 97
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=62.51 E-value=1.2e+02 Score=27.34 Aligned_cols=97 Identities=10% Similarity=0.149 Sum_probs=55.5
Q ss_pred cEEEEEECCCC-----eeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC
Q 040165 217 PVIIAFDLAEE-----KFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI 290 (358)
Q Consensus 217 ~~i~~fD~~~~-----~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~ 290 (358)
..|+.|++.+. ++..+ ..+..+....+...+|+|.+.. +..+.+|.++.. ..+.++...+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~--------g~~l~v~~l~~~---~~l~~~~~~~~~~ 130 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV--------GNKLYVYDLDNS---KTLLKKAFYDSPF 130 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE--------TTEEEEEEEETT---SSEEEEEEE-BSS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee--------cCEEEEEEccCc---ccchhhheecceE
Confidence 35666666663 44444 2222334567788899965555 468999999872 2488888777654
Q ss_pred ccccCceeeEEEEeeecCCCc-EEEEEcCcc-eEEEEECCCCeEEEe
Q 040165 291 MVRYHGSLVTLCTATGTDGGD-EIIMINKWR-EFISCNLNERTLEEI 335 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~-~l~~yd~~t~~~~~v 335 (358)
. ..-+.. .++ |++...... .++.|+.+.+++..+
T Consensus 131 ~------i~sl~~-----~~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 131 Y------ITSLSV-----FKNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp S------EEEEEE-----ETTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred E------EEEEec-----cccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 2 233333 244 444332222 466678877778877
No 98
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.72 E-value=1.2e+02 Score=27.21 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=52.0
Q ss_pred EECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEE-e-eecCCCcEEEEEcCc---
Q 040165 245 VVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCT-A-TGTDGGDEIIMINKW--- 319 (358)
Q Consensus 245 ~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~g~i~~~~~~~--- 319 (358)
...-.|-+++ ....+.++|+..-+..+-..|.+.+.|.+-..+.........++ | ..-.....+....+.
T Consensus 122 P~hlGLklA~-----~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~ 196 (361)
T KOG2445|consen 122 PKHLGLKLAA-----ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAP 196 (361)
T ss_pred chhcceEEEE-----eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCc
Confidence 3334455555 23457899998766554579999988873222111100111111 0 001112233333222
Q ss_pred ---c-eEEEEECCCCeEEEeeccc--cccceeeeeeecc
Q 040165 320 ---R-EFISCNLNERTLEEIYRPN--FDWCETVSYTESI 352 (358)
Q Consensus 320 ---~-~l~~yd~~t~~~~~v~~~~--~~~~~~~~y~~sl 352 (358)
+ .+|-||-..++|.++..+. +.-.+.+.+.||+
T Consensus 197 ~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 197 HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred cccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 1 4778888888999996554 2333444555543
No 99
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=61.71 E-value=76 Score=31.00 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=35.3
Q ss_pred eEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEEEEcc
Q 040165 202 ALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 202 ~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
-||..+.. ..|..|+++.++|-. ...-... ..+.+.+++|-|++-+ ....++.|-...
T Consensus 147 Dly~~gsg-------~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt-------~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 147 DLYLVGSG-------SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT-------EDGVVEFWDPRD 206 (703)
T ss_pred cEEEeecC-------cceEEEEccccccccccccccccceeeeecCccceEEecc-------cCceEEEecchh
Confidence 46665555 378899999999832 1111111 2345556677665554 357899998765
No 100
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=58.63 E-value=26 Score=19.12 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=17.2
Q ss_pred EEECceEEEEeecCCCCCCCcEEEEEECCCCe
Q 040165 197 CLFNGALHWLVSGFHFGSQDPVIIAFDLAEEK 228 (358)
Q Consensus 197 v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~ 228 (358)
+..+|.+|.-...+ .+.++|..+++
T Consensus 3 ~~~~~~v~~~~~~g-------~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTDG-------TLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCCC-------EEEEEEcccCc
Confidence 45567777765553 88999987653
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.31 E-value=1.4e+02 Score=26.89 Aligned_cols=131 Identities=10% Similarity=0.038 Sum_probs=67.9
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEecccccccccccccC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~~~~~~ 191 (358)
+..+-.||-++|+...+-++... .-.+-+++....|.|+. ...+.||-+++.+ -+.+.. |..
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~-----at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~------~~r-- 210 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNK-----ATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIEN------PKR-- 210 (362)
T ss_pred CceeeeehhhcCccceeeccCCc-----ceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhc------ccc--
Confidence 44556677777776555444321 22356666655566544 5688999888753 444443 211
Q ss_pred CCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEE--EECCeeEEEeecccccCCCCcEEE
Q 040165 192 SPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLG--VVGGCLSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 192 ~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~--~~~g~L~lv~~~~~~~~~~~~~~v 268 (358)
.....+.+|.--..+++. ..|..+|..+.+--..-+ .++ ....+. .....=++++ ....+.+.|
T Consensus 211 -~l~~~~l~~~~L~vG~d~------~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~lvT-----aSSDG~I~v 277 (362)
T KOG0294|consen 211 -ILCATFLDGSELLVGGDN------EWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEYLVT-----ASSDGFIKV 277 (362)
T ss_pred -ceeeeecCCceEEEecCC------ceEEEeccCCCccceeee-cchhheeeeEEEecCCceEEEE-----eccCceEEE
Confidence 122334444444444443 478888888722111000 122 122222 2223344555 235678999
Q ss_pred EEEcc
Q 040165 269 WVMKQ 273 (358)
Q Consensus 269 W~l~~ 273 (358)
|.++.
T Consensus 278 Wd~~~ 282 (362)
T KOG0294|consen 278 WDIDM 282 (362)
T ss_pred EEccc
Confidence 99875
No 102
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=57.64 E-value=1.8e+02 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.0
Q ss_pred cEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEcc
Q 040165 217 PVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
+.+..||..+..-..+.-+... ...+.+. +|+-.++. +..+++|+.+-
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~-I~av~vs~dGK~~vva--------Ndr~el~vidi 430 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGN-IEAVKVSPDGKKVVVA--------NDRFELWVIDI 430 (668)
T ss_pred ceEEEEecCCceEEEeeCCccc-eEEEEEcCCCcEEEEE--------cCceEEEEEEe
Confidence 6999999999999888877543 2334444 77766665 35789999874
No 103
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.30 E-value=36 Score=24.41 Aligned_cols=15 Identities=0% Similarity=0.164 Sum_probs=14.0
Q ss_pred eEEEEECCCCeEEEe
Q 040165 321 EFISCNLNERTLEEI 335 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v 335 (358)
+++.||++|++.+.+
T Consensus 38 Rll~ydp~t~~~~vl 52 (89)
T PF03088_consen 38 RLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred CEEEEECCCCeEEEe
Confidence 799999999999887
No 104
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=57.20 E-value=1.9e+02 Score=28.10 Aligned_cols=147 Identities=11% Similarity=0.172 Sum_probs=88.5
Q ss_pred cceEEEEEe----------CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCC
Q 040165 103 NGLVCMALH----------GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKA 172 (358)
Q Consensus 103 ~Gll~~~~~----------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t 172 (358)
.||||+... +...++.++-- |.-..+|...... ...+.+.++..+|-||... -...+-||+++.
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GP----Vhdv~W~~s~~EF~VvyGf-MPAkvtifnlr~ 303 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGP----VHDVTWSPSGREFAVVYGF-MPAKVTIFNLRG 303 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCC----ceEEEECCCCCEEEEEEec-ccceEEEEcCCC
Confidence 478887743 23456666555 6666666553221 4456677888889998752 467889999887
Q ss_pred CceEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC-CCCCceEEEEE--C
Q 040165 173 FSWRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA-CHPRSVSLGVV--G 247 (358)
Q Consensus 173 ~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P-~~~~~~~l~~~--~ 247 (358)
+-=-..+. .....+++ +|.+-.+++.+.- +..|..+|+.+ ...|.-+ +. ...+.+. |
T Consensus 304 ~~v~df~e-----------gpRN~~~fnp~g~ii~lAGFGNL---~G~mEvwDv~n--~K~i~~~~a~--~tt~~eW~Pd 365 (566)
T KOG2315|consen 304 KPVFDFPE-----------GPRNTAFFNPHGNIILLAGFGNL---PGDMEVWDVPN--RKLIAKFKAA--NTTVFEWSPD 365 (566)
T ss_pred CEeEeCCC-----------CCccceEECCCCCEEEEeecCCC---CCceEEEeccc--hhhccccccC--CceEEEEcCC
Confidence 64333222 23445555 4778888887753 46899999988 3334222 21 2334443 7
Q ss_pred CeeEEEeecccccCCCCcEEEEEEcc
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
|+-++......+.+....+.||-...
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecC
Confidence 77666654433233456788887653
No 105
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=57.00 E-value=1.4e+02 Score=26.33 Aligned_cols=108 Identities=12% Similarity=0.006 Sum_probs=63.0
Q ss_pred ECceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCC
Q 040165 199 FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVH 277 (358)
Q Consensus 199 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~ 277 (358)
.+|.+|--++... +-.|-.+|+.+++.. ..++|..-.-=.++..+++|+.++ - .....-+|..+
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-----W-k~~~~f~yd~~----- 118 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-----W-KEGTGFVYDPN----- 118 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-----S-SSSEEEEEETT-----
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-----e-cCCeEEEEccc-----
Confidence 5678887766543 348999999998875 568883222236777899999999 3 33445444432
Q ss_pred CceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 278 SSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 278 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
...++.+++... .-+.++. +|+-++..++...++..|+++-+..
T Consensus 119 -tl~~~~~~~y~~------EGWGLt~-----dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 119 -TLKKIGTFPYPG------EGWGLTS-----DGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp -TTEEEEEEE-SS------S--EEEE-----CSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred -cceEEEEEecCC------cceEEEc-----CCCEEEEECCccceEEECCcccceE
Confidence 456666666542 1344444 4553444444446999999876543
No 106
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=56.88 E-value=2.9e+02 Score=29.95 Aligned_cols=215 Identities=9% Similarity=-0.051 Sum_probs=104.3
Q ss_pred EEeecceEEEEEeCCceEEEEcccccceeccCCCCCC---CC---------CCceEEEeEeCCCCCeEEEEEEccceEEE
Q 040165 99 IGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDIS---LG---------SPYLYGFGYDSSTDDYKVLAVSCLRVLLK 166 (358)
Q Consensus 99 ~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~---~~---------~~~~~~~~~d~~~~~ykvv~~~~~~~~~~ 166 (358)
++.-++.|.+.......+.++|+.++....+...... .. ...-.++.+|+..+...| .. .....+.
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV-ad-~~~~~I~ 708 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI-AM-AGQHQIW 708 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE-EE-CCCCeEE
Confidence 3333454544422345566777777666555321100 00 001245667775443222 22 3455677
Q ss_pred EEEcCCCceEecccc--cc---ccccc-ccCCCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEec----
Q 040165 167 VFSMKAFSWRDVHYN--LG---VKLFY-GTESPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG---- 233 (358)
Q Consensus 167 vyss~t~~W~~~~~~--~~---~~~~~-~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~---- 233 (358)
+|+..++..+..... .. ...+. .......++.+ +|. +|+..... ..|..||+.+.....+-
T Consensus 709 v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n------~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 709 EYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES------SSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred EEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC------CeEEEEECCCCcEEEEEeccc
Confidence 787777655433210 00 00000 00011233443 454 77766553 58999999876543321
Q ss_pred -CC-----CC---C--------CceEEEE-ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcc---
Q 040165 234 -EA-----CH---P--------RSVSLGV-VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMV--- 292 (358)
Q Consensus 234 -~P-----~~---~--------~~~~l~~-~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~--- 292 (358)
.| .. . .-..++. .+|.|+++. .....+.+|..+. .....+.........
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD------s~N~rIrviD~~t----g~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD------SYNHKIKKLDPAT----KRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE------CCCCEEEEEECCC----CeEEEEeccCCcCCCCCc
Confidence 11 00 0 1123443 478887776 2456788887754 222222211110000
Q ss_pred -ccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 293 -RYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 293 -~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
.......|.++.+ ..+|+||+.....+.+..+|+++++.
T Consensus 853 ~~~a~l~~P~GIav-d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ALKAQLSEPAGLAL-GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccccCCceEEEE-eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 0001123444332 55788988877666799999999875
No 107
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=56.36 E-value=1.5e+02 Score=26.50 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=97.6
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccC
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
-++.++|||-.|......=++|..+ ...-.|.|+++ | |.+. .-...+.||+..+..=+..... ...++....
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~-~-VAcG-GLdN~Csiy~ls~~d~~g~~~v-~r~l~gHtg 146 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGN-F-VACG-GLDNKCSIYPLSTRDAEGNVRV-SRELAGHTG 146 (343)
T ss_pred cCCeEEEEEcccccceeEEecCcee----EEEEEECCCCC-e-EEec-CcCceeEEEeccccccccccee-eeeecCccc
Confidence 3445678888876554433333321 34456677754 3 3332 2356788998875421111100 000222111
Q ss_pred CCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEE
Q 040165 192 SPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 192 ~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW 269 (358)
+-..+-+.+ --|-+++.++ ....-.|+++.+-... .-...+ ..+.|...+++.++-+++ ...-.+|
T Consensus 147 ylScC~f~d-D~~ilT~SGD-----~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c------D~~aklW 214 (343)
T KOG0286|consen 147 YLSCCRFLD-DNHILTGSGD-----MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC------DKSAKLW 214 (343)
T ss_pred eeEEEEEcC-CCceEecCCC-----ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc------ccceeee
Confidence 224445666 5566666663 3566778887654332 333222 334455558888888753 2457789
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.+.+.. -+.+ +.++......+.+ ..+|.=+....+....-.||++.++=-.+
T Consensus 215 D~R~~~------c~qt-----F~ghesDINsv~f---fP~G~afatGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 215 DVRSGQ------CVQT-----FEGHESDINSVRF---FPSGDAFATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred eccCcc------eeEe-----ecccccccceEEE---ccCCCeeeecCCCceeEEEeecCCcEEee
Confidence 887621 1111 2222233455555 55666555554444577788877543333
No 108
>PRK04792 tolB translocation protein TolB; Provisional
Probab=54.31 E-value=2e+02 Score=27.45 Aligned_cols=186 Identities=12% Similarity=0.062 Sum_probs=92.7
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceEecccccccccccccC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
...++++|..|++...+...+.. .....+.|..+.. ++... .....+.+++.+++..+.+... .. .
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-----~~~~~wSPDG~~L-a~~~~~~g~~~Iy~~dl~tg~~~~lt~~-----~~-~- 307 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-----NGAPRFSPDGKKL-ALVLSKDGQPEIYVVDIATKALTRITRH-----RA-I- 307 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-----cCCeeECCCCCEE-EEEEeCCCCeEEEEEECCCCCeEECccC-----CC-C-
Confidence 45789999999887766543321 1123455554422 22222 3445677788888888776541 10 0
Q ss_pred CCCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCC-CCCceEEEEECCeeEEEeecccccCCCCcEEEE
Q 040165 192 SPPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEAC-HPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 192 ~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~-~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW 269 (358)
.......-+|. +++...... ...|..+|+.+++...+.... ....... .-+|+..++.. .......||
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~-SpDG~~l~~~~-----~~~g~~~I~ 377 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQNLGGSI-TPDGRSMIMVN-----RTNGKFNIA 377 (448)
T ss_pred ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCCCcCeeE-CCCCCEEEEEE-----ecCCceEEE
Confidence 01111223554 444443221 247889999888887664321 1111111 22565444442 223457888
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
.++-.+ +....+ ..... ...| .+ ..+|+ |++..... ..++.+|.+.+.-+++
T Consensus 378 ~~dl~~--g~~~~l---t~~~~-----d~~p-s~---spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 378 RQDLET--GAMQVL---TSTRL-----DESP-SV---APNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred EEECCC--CCeEEc---cCCCC-----CCCc-eE---CCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 887432 233222 11111 1233 33 44666 55544322 2478888865554555
No 109
>PLN00181 protein SPA1-RELATED; Provisional
Probab=53.59 E-value=2.8e+02 Score=28.81 Aligned_cols=184 Identities=9% Similarity=-0.016 Sum_probs=88.7
Q ss_pred eCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEecccccccccccc
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNLGVKLFYG 189 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~~~~ 189 (358)
..+..+.|||..+++....-..+ ......+.+++..+.+-+.+ .....+.+|+..++. ...+.. .
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sg--s~Dg~v~iWd~~~~~~~~~~~~------~-- 617 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEH----EKRVWSIDYSSADPTLLASG--SDDGSVKLWSINQGVSIGTIKT------K-- 617 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCC----CCCEEEEEEcCCCCCEEEEE--cCCCEEEEEECCCCcEEEEEec------C--
Confidence 35667778887776543321111 11245566666555443333 345678888887653 111111 0
Q ss_pred cCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEECCeeEEEeecccccCCCCc
Q 040165 190 TESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 190 ~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~ 265 (358)
..-.++.+ +|.....+... ..|..||+.+.+-....+..+. ....+.-.++...+.+. ....
T Consensus 618 --~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s------~D~~ 683 (793)
T PLN00181 618 --ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSS------TDNT 683 (793)
T ss_pred --CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEE------CCCE
Confidence 01112221 35554444432 4889999876532111111121 12223334666544441 3467
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
+.+|.+........|..+..+.-. ......+++ ..+|..++.....+.+..||..+.
T Consensus 684 ikiWd~~~~~~~~~~~~l~~~~gh-----~~~i~~v~~---s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 684 LKLWDLSMSISGINETPLHSFMGH-----TNVKNFVGL---SVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEeCCCCccccCCcceEEEcCC-----CCCeeEEEE---cCCCCEEEEEeCCCEEEEEECCCC
Confidence 999998753222345555544321 112334444 445555554443335777876654
No 110
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.14 E-value=1.4e+02 Score=26.57 Aligned_cols=67 Identities=10% Similarity=0.179 Sum_probs=42.6
Q ss_pred cceEEEEEEcCCCceEeccccc-ccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecC
Q 040165 161 LRVLLKVFSMKAFSWRDVHYNL-GVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGE 234 (358)
Q Consensus 161 ~~~~~~vyss~t~~W~~~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~ 234 (358)
.+..+.+|+..+.+|....... +. ...-......-+++.|.+-.-... ...+..||..+.+|+.++-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~------~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTN------SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCC------ceeEEEEecCCCeeeecCC
Confidence 4788999999999998877631 10 000000124455555554443322 3689999999999987754
No 111
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=52.07 E-value=1.8e+02 Score=26.25 Aligned_cols=111 Identities=14% Similarity=-0.020 Sum_probs=59.9
Q ss_pred ceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCce
Q 040165 201 GALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSW 280 (358)
Q Consensus 201 G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W 280 (358)
+.+||....+ ..|..+|+.+++-+..+.|..-....+...+|.|.... ..+.++..+. ...|
T Consensus 37 ~~L~w~DI~~------~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~---------~g~~~~~~~~---~~~~ 98 (307)
T COG3386 37 GALLWVDILG------GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE---------HGVRLLDPDT---GGKI 98 (307)
T ss_pred CEEEEEeCCC------CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc---------cccEEEeccC---Ccee
Confidence 4689988876 58999999999888888883211222333344443332 1233333332 2455
Q ss_pred eEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----c------ceEEEEECCCCeEEEe
Q 040165 281 ERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----W------REFISCNLNERTLEEI 335 (358)
Q Consensus 281 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~------~~l~~yd~~t~~~~~v 335 (358)
++........-. ....-..+ ..+|.+++.... . .+||.||+.....+.+
T Consensus 99 t~~~~~~~~~~~---~r~ND~~v---~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 99 TLLAEPEDGLPL---NRPNDGVV---DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred EEeccccCCCCc---CCCCceeE---cCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 444444322111 11222333 445667775544 1 1699999965555444
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=51.88 E-value=1e+02 Score=29.62 Aligned_cols=101 Identities=9% Similarity=0.072 Sum_probs=58.8
Q ss_pred cEEEEEECCCC--eeEEecCCCC-C-CceEEEE--ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC
Q 040165 217 PVIIAFDLAEE--KFCRVGEACH-P-RSVSLGV--VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI 290 (358)
Q Consensus 217 ~~i~~fD~~~~--~~~~i~~P~~-~-~~~~l~~--~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~ 290 (358)
..|-++|+... ++-+-.++|- + .+++-+. .||+-.++++ ...++.||.|... .=.....++-.
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG------eastlsiWDLAap----Tprikaeltss- 508 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG------EASTLSIWDLAAP----TPRIKAELTSS- 508 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc------ccceeeeeeccCC----CcchhhhcCCc-
Confidence 57888887743 3333355542 2 3443333 3888878873 3678999999752 11112222211
Q ss_pred ccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 291 MVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
...+..+++ ..+.+|+|.....+.+.++|+.++++.+-
T Consensus 509 ----apaCyALa~---spDakvcFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 509 ----APACYALAI---SPDAKVCFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred ----chhhhhhhc---CCccceeeeeccCCcEEEEEcccceeeec
Confidence 112566677 66677777665444588889888877653
No 113
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=51.47 E-value=2.2e+02 Score=27.57 Aligned_cols=112 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC--------CceEEEEEC-CeeEEEeecccccCCCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP--------RSVSLGVVG-GCLSLNVCCSNCVDKTT 264 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~--------~~~~l~~~~-g~L~lv~~~~~~~~~~~ 264 (358)
..++..+|.+|.....+ .+.++|..+++-..-.-.... ....++..+ +++++.. ...
T Consensus 55 ~sPvv~~g~vy~~~~~g-------~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-------~~g 120 (488)
T cd00216 55 GTPLVVDGDMYFTTSHS-------ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-------FDG 120 (488)
T ss_pred cCCEEECCEEEEeCCCC-------cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-------CCC
Q ss_pred cEEEEEEccCCCCCceeEEEEee------cCCccccCceeeEEEEeeecCCCcEEEEE--------cCcceEEEEECCCC
Q 040165 265 DFELWVMKQYGVHSSWERLTKID------NDIMVRYHGSLVTLCTATGTDGGDEIIMI--------NKWREFISCNLNER 330 (358)
Q Consensus 265 ~~~vW~l~~~~~~~~W~~~~~i~------~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--------~~~~~l~~yd~~t~ 330 (358)
.+.....++ .+..|.....-. ... .|... ++.+++.. .....++.+|.+|+
T Consensus 121 ~v~AlD~~T--G~~~W~~~~~~~~~~~~~i~s--------sP~v~-----~~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 121 RLVALDAET--GKQVWKFGNNDQVPPGYTMTG--------APTIV-----KKLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred eEEEEECCC--CCEeeeecCCCCcCcceEecC--------CCEEE-----CCEEEEeccccccccCCCCcEEEEEECCCC
Q ss_pred eEEE
Q 040165 331 TLEE 334 (358)
Q Consensus 331 ~~~~ 334 (358)
+..+
T Consensus 186 ~~~W 189 (488)
T cd00216 186 KLLW 189 (488)
T ss_pred ceee
No 114
>PRK04043 tolB translocation protein TolB; Provisional
Probab=51.15 E-value=2.2e+02 Score=26.97 Aligned_cols=190 Identities=10% Similarity=-0.007 Sum_probs=99.9
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceEecccccccccccccC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
..++++.|..|++...|...+.. .....+.|. ++.-++... .....+.+++..++.++.+.. .+..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~-----~~~~~~SPD-G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~-----~~~~-- 278 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM-----LVVSDVSKD-GSKLLLTMAPKGQPDIYLYDTNTKTLTQITN-----YPGI-- 278 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc-----EEeeEECCC-CCEEEEEEccCCCcEEEEEECCCCcEEEccc-----CCCc--
Confidence 56799999999998887643221 112234443 333333322 345678888888899988765 2210
Q ss_pred CCCceEEECc-eEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEECCeeEEEeecccc-cCCCCcEEEE
Q 040165 192 SPPKGCLFNG-ALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVVGGCLSLNVCCSNC-VDKTTDFELW 269 (358)
Q Consensus 192 ~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~-~~~~~~~~vW 269 (358)
.......-|| .+|+...... ...|...|+.+++.+.+-.- ...... ..-+|+..++...... .......+||
T Consensus 279 d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~-g~~~~~-~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFH-GKNNSS-VSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred cCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccC-CCcCce-ECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 1112233356 5777765432 24788899998887655321 111111 1225554444422110 0011347888
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
.++-.+ +.+..+.. .. . ...|. + ..+|+ |++..... ..+..++++.+.-..+
T Consensus 353 v~d~~~--g~~~~LT~---~~---~--~~~p~-~---SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 353 LISTNS--DYIRRLTA---NG---V--NQFPR-F---SSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred EEECCC--CCeEECCC---CC---C--cCCeE-E---CCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 887432 34433222 11 1 12333 3 45676 66654322 2589999988766666
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=50.82 E-value=3.1e+02 Score=28.55 Aligned_cols=188 Identities=7% Similarity=-0.053 Sum_probs=85.5
Q ss_pred CceEEEE--cccccceeccCCCCCCCC-C-CceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccc
Q 040165 113 CKDFFIY--NPSTRAHKKLPDPDISLG-S-PYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFY 188 (358)
Q Consensus 113 ~~~~~V~--NP~T~~~~~lP~~~~~~~-~-~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~ 188 (358)
...+++| |+.++.|..+-+...+.. . ......++....+ +-+++ .....+.+|....+.=..+- .++
T Consensus 25 gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~--s~~~tv~~y~fps~~~~~iL------~Rf 95 (933)
T KOG1274|consen 25 GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTG--SEQNTVLRYKFPSGEEDTIL------ARF 95 (933)
T ss_pred CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEe--eccceEEEeeCCCCCcccee------eee
Confidence 3345555 666777766655322211 1 1112223322223 22222 34677888887665433221 111
Q ss_pred ccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE----ecCCCCCCceEEEE-ECCeeEEEeecccccCCC
Q 040165 189 GTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR----VGEACHPRSVSLGV-VGGCLSLNVCCSNCVDKT 263 (358)
Q Consensus 189 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~----i~~P~~~~~~~l~~-~~g~L~lv~~~~~~~~~~ 263 (358)
......-++..+|..-..+++. ..|-+.++.+..-.. ...|. ..|-- -+|.+..+.. -.
T Consensus 96 tlp~r~~~v~g~g~~iaagsdD------~~vK~~~~~D~s~~~~lrgh~apV----l~l~~~p~~~fLAvss------~d 159 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGKMIAAGSDD------TAVKLLNLDDSSQEKVLRGHDAPV----LQLSYDPKGNFLAVSS------CD 159 (933)
T ss_pred eccceEEEEecCCcEEEeecCc------eeEEEEeccccchheeecccCCce----eeeeEcCCCCEEEEEe------cC
Confidence 1111123344455555555443 455555555443322 23341 12221 2555544441 24
Q ss_pred CcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 264 TDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 264 ~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
+.+.||.+++..-...|..+..-.-... ...+..+..- +++|.+.+..-+. .|.+|+.++-.
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~--s~i~~~~aW~---Pk~g~la~~~~d~-~Vkvy~r~~we 221 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFIL--SRICTRLAWH---PKGGTLAVPPVDN-TVKVYSRKGWE 221 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccc--cceeeeeeec---CCCCeEEeeccCC-eEEEEccCCce
Confidence 6789999987433345555433222111 0111223333 6667766665555 38888766533
No 116
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.76 E-value=1.3e+02 Score=25.59 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=43.4
Q ss_pred EEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccc--------cCceeeEEEEeeecCCCcEEE
Q 040165 243 LGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVR--------YHGSLVTLCTATGTDGGDEII 314 (358)
Q Consensus 243 l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~g~i~~ 314 (358)
+...+..|.+++ ..+.+.+|.++.. +. ....++..++.. .........+ ..+|..++
T Consensus 18 l~~~~~~Ll~iT-------~~G~l~vWnl~~~--k~---~~~~~Si~pll~~~~~~~~~~~~~i~~~~l---t~~G~PiV 82 (219)
T PF07569_consen 18 LECNGSYLLAIT-------SSGLLYVWNLKKG--KA---VLPPVSIAPLLNSSPVSDKSSSPNITSCSL---TSNGVPIV 82 (219)
T ss_pred EEeCCCEEEEEe-------CCCeEEEEECCCC--ee---ccCCccHHHHhcccccccCCCCCcEEEEEE---cCCCCEEE
Confidence 333455566665 3578999998762 11 112223322221 1122333444 57787444
Q ss_pred EEcCcceEEEEECCCCeEEEe
Q 040165 315 MINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 315 ~~~~~~~l~~yd~~t~~~~~v 335 (358)
.....+ .|.||.+-+.|.+|
T Consensus 83 ~lsng~-~y~y~~~L~~W~~v 102 (219)
T PF07569_consen 83 TLSNGD-SYSYSPDLGCWIRV 102 (219)
T ss_pred EEeCCC-EEEeccccceeEEe
Confidence 433333 99999999999998
No 117
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=50.05 E-value=28 Score=20.11 Aligned_cols=27 Identities=0% Similarity=-0.075 Sum_probs=18.6
Q ss_pred EEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 312 EIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 312 i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
|++...+ ..++.+|.+|++..+-++..
T Consensus 3 v~~~~~~-g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPD-GYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTT-SEEEEEETTTTSEEEEEESS
T ss_pred EEEeCCC-CEEEEEECCCCCEEEeeeCC
Confidence 5555333 35999999999887765443
No 118
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.77 E-value=1.7e+02 Score=26.99 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=42.1
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeec
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYR 337 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~ 337 (358)
...|.+|.+... +-+..+.++.+..+.+++ ..+|+-++...+.+++-+||+++++-.+..+
T Consensus 313 DktIk~wdv~tg-----------~cL~tL~ghdnwVr~~af---~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 313 DKTIKIWDVSTG-----------MCLFTLVGHDNWVRGVAF---SPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cceEEEEeccCC-----------eEEEEEecccceeeeeEE---cCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 568999998751 222223455666888888 7788855555555569999999998777633
No 119
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=44.76 E-value=2.2e+02 Score=27.61 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=68.2
Q ss_pred ceEEEEEEcCCC-ceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCC--CC
Q 040165 162 RVLLKVFSMKAF-SWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEAC--HP 238 (358)
Q Consensus 162 ~~~~~vyss~t~-~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~--~~ 238 (358)
.....+++.... +|..... ..... .--..-||.+++.... .+..+|.-.+......+|. ..
T Consensus 127 ~~~~~~iD~~G~Vrw~~~~~-----~~~~~---~~~~l~nG~ll~~~~~--------~~~e~D~~G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 127 SSYTYLIDNNGDVRWYLPLD-----SGSDN---SFKQLPNGNLLIGSGN--------RLYEIDLLGKVIWEYDLPGGYYD 190 (477)
T ss_dssp EEEEEEEETTS-EEEEE-GG-----GT--S---SEEE-TTS-EEEEEBT--------EEEEE-TT--EEEEEE--TTEE-
T ss_pred CceEEEECCCccEEEEEccC-----ccccc---eeeEcCCCCEEEecCC--------ceEEEcCCCCEEEeeecCCcccc
Confidence 455666666555 6754332 11000 1123457888887763 7899999888766677773 12
Q ss_pred CceEEEEE-CCeeEEEeecccc-----cCCCCcEEEEEEccCC-CCCceeEEEEeecCCc--------------cccCce
Q 040165 239 RSVSLGVV-GGCLSLNVCCSNC-----VDKTTDFELWVMKQYG-VHSSWERLTKIDNDIM--------------VRYHGS 297 (358)
Q Consensus 239 ~~~~l~~~-~g~L~lv~~~~~~-----~~~~~~~~vW~l~~~~-~~~~W~~~~~i~~~~~--------------~~~~~~ 297 (358)
....+..+ +|.+.+.+..... ......=.|-+++..| .-..|.....++.... .....+
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 23334444 5566555531000 0000011122232211 0012222222211111 011233
Q ss_pred eeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 298 LVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 298 ~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
...-++.++..++.|++..+....++..|.+|++++++.+-+
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 455555455656668888776657999999999999985443
No 120
>PRK04792 tolB translocation protein TolB; Provisional
Probab=44.69 E-value=2.9e+02 Score=26.42 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=72.1
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCC-CCCC
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA-CHPR 239 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P-~~~~ 239 (358)
...+.+++..+++-+.+.. .+... ......-+|. +++...... ...|..+|+.+++.+.+.-. ....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~-----~~g~~--~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTS-----FPGIN--GAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred CcEEEEEECCCCCeEEecC-----CCCCc--CCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCcc
Confidence 4567777887776655543 21100 0111223554 444433221 24688899998877665322 1111
Q ss_pred ceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcC
Q 040165 240 SVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINK 318 (358)
Q Consensus 240 ~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~ 318 (358)
.... .-+|+-.++.. ......++|.++-.+ +++.++. ... .. ...+ .+ ..+|+ |++....
T Consensus 310 ~p~w-SpDG~~I~f~s-----~~~g~~~Iy~~dl~~--g~~~~Lt---~~g---~~-~~~~-~~---SpDG~~l~~~~~~ 370 (448)
T PRK04792 310 EPSW-HPDGKSLIFTS-----ERGGKPQIYRVNLAS--GKVSRLT---FEG---EQ-NLGG-SI---TPDGRSMIMVNRT 370 (448)
T ss_pred ceEE-CCCCCEEEEEE-----CCCCCceEEEEECCC--CCEEEEe---cCC---CC-CcCe-eE---CCCCCEEEEEEec
Confidence 1111 22555444431 223456888887532 4554432 111 10 0122 34 44566 6665432
Q ss_pred c--ceEEEEECCCCeEEEe
Q 040165 319 W--REFISCNLNERTLEEI 335 (358)
Q Consensus 319 ~--~~l~~yd~~t~~~~~v 335 (358)
. ..++.+|+++++.+.+
T Consensus 371 ~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 371 NGKFNIARQDLETGAMQVL 389 (448)
T ss_pred CCceEEEEEECCCCCeEEc
Confidence 2 1588999999988776
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=44.31 E-value=84 Score=31.06 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=38.5
Q ss_pred cEEEEEECCCCeeEE----e-cCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEEEEccC
Q 040165 217 PVIIAFDLAEEKFCR----V-GEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQY 274 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~----i-~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~ 274 (358)
..|.-||.....|+. + ..+++. ..+.+.-..|..++|. .....++.+|.+++.
T Consensus 74 G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVs-----asGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 74 GGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVS-----ASGDSTIRPWDVKTS 132 (720)
T ss_pred CceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEE-----ccCCceeeeeeeccc
Confidence 489999999988872 2 233443 5666666679999998 445678999999874
No 122
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=43.71 E-value=1.8e+02 Score=26.42 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=45.3
Q ss_pred CceEEE-CceEEEEeecCCCCCC-CcEEEEEECC-CCeeEEe-cCCCCC-CceEEEEE-CCeeEEEeecccccCCCCcEE
Q 040165 194 PKGCLF-NGALHWLVSGFHFGSQ-DPVIIAFDLA-EEKFCRV-GEACHP-RSVSLGVV-GGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 194 ~~~v~~-~G~lywl~~~~~~~~~-~~~i~~fD~~-~~~~~~i-~~P~~~-~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~ 267 (358)
..+|.. ||.|-+-......... ..+++.|... .+.|..- ..|..+ ....+++. +|+|.+++.++ ...-.
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~-----~g~rr 198 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACD-----DGRRR 198 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-T-----TS---
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecc-----cceEE
Confidence 444444 8877776543322222 2688888887 6789875 233223 46789999 99999999543 34567
Q ss_pred EEEEccCCCCCceeEE
Q 040165 268 LWVMKQYGVHSSWERL 283 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~ 283 (358)
|++-.+ ...+|++.
T Consensus 199 VYeS~D--mG~tWtea 212 (310)
T PF13859_consen 199 VYESGD--MGTTWTEA 212 (310)
T ss_dssp EEEESS--TTSS-EE-
T ss_pred EEEEcc--cceehhhc
Confidence 777766 34789973
No 123
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=43.23 E-value=2.5e+02 Score=25.23 Aligned_cols=167 Identities=10% Similarity=0.007 Sum_probs=83.4
Q ss_pred EEeEeCCCCCeEEEEEEccceEEEEEEcCCC-ceEecccccccccccccCCCCceE-EECce-EEEEeecCCCCCCCcEE
Q 040165 143 GFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF-SWRDVHYNLGVKLFYGTESPPKGC-LFNGA-LHWLVSGFHFGSQDPVI 219 (358)
Q Consensus 143 ~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~-~W~~~~~~~~~~~~~~~~~~~~~v-~~~G~-lywl~~~~~~~~~~~~i 219 (358)
.+.++|.. ++-++.- .....+.+|+..++ .-...... ....+.+. .....+ .-+|. +|...... ..|
T Consensus 130 ~~~~~p~g-~~l~v~~-~~~~~v~v~d~~~~g~l~~~~~~-~~~~~~g~-~p~~~~~~pdg~~lyv~~~~~------~~v 199 (330)
T PRK11028 130 SANIDPDN-RTLWVPC-LKEDRIRLFTLSDDGHLVAQEPA-EVTTVEGA-GPRHMVFHPNQQYAYCVNELN------SSV 199 (330)
T ss_pred EeEeCCCC-CEEEEee-CCCCEEEEEEECCCCcccccCCC-ceecCCCC-CCceEEECCCCCEEEEEecCC------CEE
Confidence 34556654 4443332 35578999998763 33211100 00011111 112222 23455 44443322 578
Q ss_pred EEEECC--CCeeEEe----cCCC--CC-Cc-eEEEE-ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeec
Q 040165 220 IAFDLA--EEKFCRV----GEAC--HP-RS-VSLGV-VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDN 288 (358)
Q Consensus 220 ~~fD~~--~~~~~~i----~~P~--~~-~~-~~l~~-~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~ 288 (358)
.+||+. ++++..+ ..|. .. .. ..+.. -+|+..++. ......+.+|.++..+ ..+..+..++.
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-----~~~~~~I~v~~i~~~~--~~~~~~~~~~~ 272 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-----DRTASLISVFSVSEDG--SVLSFEGHQPT 272 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-----cCCCCeEEEEEEeCCC--CeEEEeEEEec
Confidence 888876 3455443 2342 11 11 12222 366655554 2345689999997633 46777777665
Q ss_pred CCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEE--ECCCCeEEEe
Q 040165 289 DIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISC--NLNERTLEEI 335 (358)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~y--d~~t~~~~~v 335 (358)
... .+-+.+ ..+|+ |+......+.+..| |.+++.++.+
T Consensus 273 ~~~------p~~~~~---~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 273 ETQ------PRGFNI---DHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred ccc------CCceEE---CCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 321 233455 55676 66555434446666 4567788777
No 124
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=42.32 E-value=2.6e+02 Score=25.22 Aligned_cols=138 Identities=12% Similarity=0.195 Sum_probs=55.4
Q ss_pred EEEcCC--CceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC--CCCCceE
Q 040165 167 VFSMKA--FSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA--CHPRSVS 242 (358)
Q Consensus 167 vyss~t--~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P--~~~~~~~ 242 (358)
+|...+ .+|...... .+........+|..+|.--|+.+.. ..|+.-+=..++|+.++++ .......
T Consensus 39 il~T~DGG~tW~~~~~~----~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~ 108 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLD----LDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFG 108 (302)
T ss_dssp EEEESSTTSS-EE---------S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEE
T ss_pred EEEECCCCccccccccC----CCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeE
Confidence 454443 479887642 1111111233454444434555543 2555555567899999765 2222333
Q ss_pred EEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcce
Q 040165 243 LGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWRE 321 (358)
Q Consensus 243 l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 321 (358)
+... ++...+++ . .=.|+.-.+.| .+|..+..=.... ...... ..+|.++.+.....-
T Consensus 109 i~~l~~~~~~l~~-----~----~G~iy~T~DgG--~tW~~~~~~~~gs-------~~~~~r---~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 109 ITALGDGSAELAG-----D----RGAIYRTTDGG--KTWQAVVSETSGS-------INDITR---SSDGRYVAVSSRGNF 167 (302)
T ss_dssp EEEEETTEEEEEE-----T----T--EEEESSTT--SSEEEEE-S-----------EEEEEE----TTS-EEEEETTSSE
T ss_pred EEEcCCCcEEEEc-----C----CCcEEEeCCCC--CCeeEcccCCcce-------eEeEEE---CCCCcEEEEECcccE
Confidence 4444 66666665 2 23467777644 7998764322111 122222 445554444443332
Q ss_pred EEEEECCCCeEEEe
Q 040165 322 FISCNLNERTLEEI 335 (358)
Q Consensus 322 l~~yd~~t~~~~~v 335 (358)
+...|+....|+..
T Consensus 168 ~~s~~~G~~~w~~~ 181 (302)
T PF14870_consen 168 YSSWDPGQTTWQPH 181 (302)
T ss_dssp EEEE-TT-SS-EEE
T ss_pred EEEecCCCccceEE
Confidence 34556665556555
No 125
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=41.35 E-value=14 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHhccCC--------cccceeeeecccccccccCC
Q 040165 2 WSIPKDILEAEILCRLP--------IKSLLRFKCVSKEWHCLISD 38 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp--------~~~l~r~r~VcK~W~~li~~ 38 (358)
+.||.++|. +|+.|.. -++...+..||+.||.+..+
T Consensus 46 ~~l~~~~L~-d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLS-DVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHH-HHhhhccccccccccccccccccchhhhhhhhccc
Confidence 379999999 9999986 23688999999999997653
No 126
>PLN02772 guanylate kinase
Probab=40.87 E-value=2e+02 Score=27.01 Aligned_cols=83 Identities=4% Similarity=-0.001 Sum_probs=48.8
Q ss_pred eEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-
Q 040165 241 VSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW- 319 (358)
Q Consensus 241 ~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~- 319 (358)
-..++.++++|++++... .......+|.+|. ....|+.-......+.++. ....++ ..+++|++...+.
T Consensus 28 ~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~--~t~~W~~P~V~G~~P~~r~---GhSa~v---~~~~rilv~~~~~~ 97 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHE--GNTLSIGVQILDK--ITNNWVSPIVLGTGPKPCK---GYSAVV---LNKDRILVIKKGSA 97 (398)
T ss_pred ceeEEECCEEEEEcccCC--CccccceEEEEEC--CCCcEecccccCCCCCCCC---cceEEE---ECCceEEEEeCCCC
Confidence 345667999999997432 1225788999987 3478988665544333221 233333 3455677765322
Q ss_pred --ceEEEEECCCCeEE
Q 040165 320 --REFISCNLNERTLE 333 (358)
Q Consensus 320 --~~l~~yd~~t~~~~ 333 (358)
+.++....+|.-.+
T Consensus 98 ~~~~~w~l~~~t~~~~ 113 (398)
T PLN02772 98 PDDSIWFLEVDTPFVR 113 (398)
T ss_pred CccceEEEEcCCHHHH
Confidence 24666666665443
No 127
>PRK00178 tolB translocation protein TolB; Provisional
Probab=38.03 E-value=3.5e+02 Score=25.46 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=91.9
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceEecccccccccccccC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
...++++|..|++...+...+.. .....+.|..+ +-++... .....+.+++..++..+.+... +. .
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~-----~~~~~~SpDG~-~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-----~~-~- 288 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL-----NGAPAWSPDGS-KLAFVLSKDGNPEIYVMDLASRQLSRVTNH-----PA-I- 288 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC-----cCCeEECCCCC-EEEEEEccCCCceEEEEECCCCCeEEcccC-----CC-C-
Confidence 35789999999988777644321 11234445433 2222222 3345778889988888766541 11 0
Q ss_pred CCCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEE
Q 040165 192 SPPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 192 ~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW 269 (358)
.......-+|. +++...... ...|..+|+.+++...+...... ...... -+|+..++.. .......||
T Consensus 289 ~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~~~~~~~~S-pdg~~i~~~~-----~~~~~~~l~ 358 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGNYNARPRLS-ADGKTLVMVH-----RQDGNFHVA 358 (430)
T ss_pred cCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCCccceEEC-CCCCEEEEEE-----ccCCceEEE
Confidence 01111222554 555543321 24788889888877666433111 111111 2444433331 122345677
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
.++-.+ +....+. .... ...+ .+ ..+|+ |++..... ..++..+...+.-+.+
T Consensus 359 ~~dl~t--g~~~~lt---~~~~-----~~~p-~~---spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 359 AQDLQR--GSVRILT---DTSL-----DESP-SV---APNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred EEECCC--CCEEEcc---CCCC-----CCCc-eE---CCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 766422 3333221 1111 1233 34 45677 55544322 2588888876655555
No 128
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=37.09 E-value=3.5e+02 Score=25.16 Aligned_cols=186 Identities=11% Similarity=0.060 Sum_probs=87.5
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceEecccccccccccccC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
...++++|...+.-+.+-..... .....+.|.. ++-+.... .....+.+++..++.-+.+.. .+...
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-----~~~~~- 236 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREP-----ILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREKVAS-----FPGMN- 236 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCc-----eecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEeec-----CCCCc-
Confidence 45678888765554544332211 1222333432 33222221 233578888888876655443 11110
Q ss_pred CCCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecC-CCCCCceEEEEECCe-eEEEeecccccCCCCcEEE
Q 040165 192 SPPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGE-ACHPRSVSLGVVGGC-LSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 192 ~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~-P~~~~~~~l~~~~g~-L~lv~~~~~~~~~~~~~~v 268 (358)
......-+|. +++...... ...|..+|+.++....+.. +........ .-+|+ |++.. ......+|
T Consensus 237 -~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-s~dg~~l~~~s------~~~g~~~i 304 (417)
T TIGR02800 237 -GAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTEPSW-SPDGKSIAFTS------DRGGSPQI 304 (417)
T ss_pred -cceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCCEEE-CCCCCEEEEEE------CCCCCceE
Confidence 0111223554 544433221 2468889998887665522 211111111 12555 44443 22234467
Q ss_pred EEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 269 WVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
|.++-.+ ..+.++ .... .......+ ..+|+ |++...+. ..++.+|++++.++.+
T Consensus 305 y~~d~~~--~~~~~l---~~~~-----~~~~~~~~---spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 305 YMMDADG--GEVRRL---TFRG-----GYNASPSW---SPDGDLIAFVHREGGGFNIAVMDLDGGGERVL 361 (417)
T ss_pred EEEECCC--CCEEEe---ecCC-----CCccCeEE---CCCCCEEEEEEccCCceEEEEEeCCCCCeEEc
Confidence 7776432 344332 2111 01122233 44566 55554432 1599999999877766
No 129
>PF13013 F-box-like_2: F-box-like domain
Probab=36.42 E-value=6.8 Score=29.27 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHhccCCcccceeeeeccc
Q 040165 2 WSIPKDILEAEILCRLPIKSLLRFKCVSK 30 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp~~~l~r~r~VcK 30 (358)
.+||+||+. .|+..-..+++...-..|+
T Consensus 23 ~DLP~ELl~-~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQ-LIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHH-HHHhhcCcHHHHHHHHHHH
Confidence 469999999 9999988777755555555
No 130
>PRK13684 Ycf48-like protein; Provisional
Probab=36.25 E-value=3.4e+02 Score=24.77 Aligned_cols=140 Identities=11% Similarity=0.037 Sum_probs=66.8
Q ss_pred EEEEEcCC--CceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEE-EECCCCeeEEecCCCCCCce
Q 040165 165 LKVFSMKA--FSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIA-FDLAEEKFCRVGEACHPRSV 241 (358)
Q Consensus 165 ~~vyss~t--~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~-fD~~~~~~~~i~~P~~~~~~ 241 (358)
-.+|.+.. .+|+.+... ... .-.......+-.++..+.. ..+.. .|-..++|..++.+......
T Consensus 152 G~i~~S~DgG~tW~~~~~~-----~~g--~~~~i~~~~~g~~v~~g~~------G~i~~s~~~gg~tW~~~~~~~~~~l~ 218 (334)
T PRK13684 152 GAIYRTTDGGKNWEALVED-----AAG--VVRNLRRSPDGKYVAVSSR------GNFYSTWEPGQTAWTPHQRNSSRRLQ 218 (334)
T ss_pred ceEEEECCCCCCceeCcCC-----Ccc--eEEEEEECCCCeEEEEeCC------ceEEEEcCCCCCeEEEeeCCCcccce
Confidence 35666664 489987651 110 0011122223345554443 13333 35556789988776433223
Q ss_pred EEEE-ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcc
Q 040165 242 SLGV-VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWR 320 (358)
Q Consensus 242 ~l~~-~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 320 (358)
.++. -+|++++++ . ...+ +-.-.+ ...+|+.+..-..... .. ..-+++ ..++.+++......
T Consensus 219 ~i~~~~~g~~~~vg-----~--~G~~-~~~s~d--~G~sW~~~~~~~~~~~---~~-l~~v~~---~~~~~~~~~G~~G~ 281 (334)
T PRK13684 219 SMGFQPDGNLWMLA-----R--GGQI-RFNDPD--DLESWSKPIIPEITNG---YG-YLDLAY---RTPGEIWAGGGNGT 281 (334)
T ss_pred eeeEcCCCCEEEEe-----c--CCEE-EEccCC--CCCccccccCCccccc---cc-eeeEEE---cCCCCEEEEcCCCe
Confidence 3333 378888887 2 2222 111123 2379987532101010 00 122233 33556776655542
Q ss_pred eEEEEECCCCeEEEe
Q 040165 321 EFISCNLNERTLEEI 335 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v 335 (358)
++.-.-..++|+.+
T Consensus 282 -v~~S~d~G~tW~~~ 295 (334)
T PRK13684 282 -LLVSKDGGKTWEKD 295 (334)
T ss_pred -EEEeCCCCCCCeEC
Confidence 55545556788887
No 131
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=35.41 E-value=2.7e+02 Score=27.30 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=64.5
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
..+|-++.+..++.++.||||.. .+.+-.+...+. ...+..-|.|-++.=.|+.. .....+.+|+...-+=+..+.
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHt-aNIFsvKFvP~tnnriv~sg-AgDk~i~lfdl~~~~~~~~d~ 134 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHT-ANIFSVKFVPYTNNRIVLSG-AGDKLIKLFDLDSSKEGGMDH 134 (758)
T ss_pred cCCCCEEeecCCcceEEeecchh--cceeeeeecccc-cceeEEeeeccCCCeEEEec-cCcceEEEEeccccccccccc
Confidence 46788888745678899999993 344433332222 12455667788776666554 356778888876422222111
Q ss_pred ccccccc-ccc---CCCCceEEECc-eEEEEeecCCCCCCCcEEEEEECCCC
Q 040165 181 NLGVKLF-YGT---ESPPKGCLFNG-ALHWLVSGFHFGSQDPVIIAFDLAEE 227 (358)
Q Consensus 181 ~~~~~~~-~~~---~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~ 227 (358)
....+.. +.. +...-++.-+| -.+|.+.+. ..|.-||+..-
T Consensus 135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED------GtirQyDiREp 180 (758)
T KOG1310|consen 135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED------GTIRQYDIREP 180 (758)
T ss_pred CccchhhhhhhhhhhhhheecCCCCCceEEEecCC------cceeeecccCC
Confidence 0000000 100 01122334455 688888775 47888888763
No 132
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.22 E-value=3.7e+02 Score=24.69 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=57.9
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-------ccceEEEEEEcCCC--ceEec-cccccc
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-------CLRVLLKVFSMKAF--SWRDV-HYNLGV 184 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-------~~~~~~~vyss~t~--~W~~~-~~~~~~ 184 (358)
+++|++.-+++..-. .+. .+...+..++..+.+.++-.. .+...+++|+..|= .++.. +.
T Consensus 18 rv~viD~d~~k~lGm--i~~----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~---- 87 (342)
T PF06433_consen 18 RVYVIDADSGKLLGM--IDT----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP---- 87 (342)
T ss_dssp EEEEEETTTTEEEEE--EEE----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT----
T ss_pred eEEEEECCCCcEEEE--eec----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC----
Confidence 566677666553221 111 123335556766666655432 45677999999986 45322 21
Q ss_pred ccccccCC---CCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCee-EEecCC-C
Q 040165 185 KLFYGTES---PPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEA-C 236 (358)
Q Consensus 185 ~~~~~~~~---~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P-~ 236 (358)
-|..... ....+..+|+ +|...... ..+|-+.|++..++ ..|+.| |
T Consensus 88 -k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-----a~SVtVVDl~~~kvv~ei~~PGC 139 (342)
T PF06433_consen 88 -KPRAQVVPYKNMFALSADGKFLYVQNFTP-----ATSVTVVDLAAKKVVGEIDTPGC 139 (342)
T ss_dssp -S-B--BS--GGGEEE-TTSSEEEEEEESS-----SEEEEEEETTTTEEEEEEEGTSE
T ss_pred -cchheecccccceEEccCCcEEEEEccCC-----CCeEEEEECCCCceeeeecCCCE
Confidence 0011111 1334445676 45544443 35999999999999 567999 5
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=33.85 E-value=2.5e+02 Score=25.24 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=37.2
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
...+++|+++..+.-.. +....... -..-.+. .++|. |+....+. .+-.+|+.+++...| ..+
T Consensus 49 D~tVR~wevq~~g~~~~---ka~~~~~~------PvL~v~W---sddgskVf~g~~Dk-~~k~wDL~S~Q~~~v-~~H 112 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVP---KAQQSHDG------PVLDVCW---SDDGSKVFSGGCDK-QAKLWDLASGQVSQV-AAH 112 (347)
T ss_pred CCceEEEEEecCCcccc---hhhhccCC------CeEEEEE---ccCCceEEeeccCC-ceEEEEccCCCeeee-eec
Confidence 36899999987432111 11111111 1222232 55566 55555555 499999999999999 776
No 134
>PRK04043 tolB translocation protein TolB; Provisional
Probab=33.00 E-value=4.3e+02 Score=25.03 Aligned_cols=99 Identities=10% Similarity=0.140 Sum_probs=55.3
Q ss_pred cEEEEEECCCCeeEEe-cCCCCCCceEEEEECC-eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 217 PVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGG-CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g-~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
..|..+|+.+++-+.+ ..+....... ..-|| +|.+.. .....-+||.++-.+ +.+.++..-+...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~------~~~g~~~Iy~~dl~~--g~~~~LT~~~~~d---- 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTM------APKGQPDIYLYDTNT--KTLTQITNYPGID---- 279 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEE------ccCCCcEEEEEECCC--CcEEEcccCCCcc----
Confidence 3788999988776666 3331110111 12266 455544 123457888887532 4555443222111
Q ss_pred CceeeEEEEeeecCCCc-EEEEEcCcc--eEEEEECCCCeEEEe
Q 040165 295 HGSLVTLCTATGTDGGD-EIIMINKWR--EFISCNLNERTLEEI 335 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~-i~~~~~~~~--~l~~yd~~t~~~~~v 335 (358)
..+. . ..+|+ |+|.....+ .++.+|+++++.+++
T Consensus 280 ---~~p~-~---SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 280 ---VNGN-F---VEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred ---CccE-E---CCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 2232 3 45665 777764322 599999999999777
No 135
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=32.97 E-value=99 Score=17.65 Aligned_cols=24 Identities=0% Similarity=-0.141 Sum_probs=17.2
Q ss_pred cEEEEEcCcceEEEEECCCCeEEE
Q 040165 311 DEIIMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 311 ~i~~~~~~~~~l~~yd~~t~~~~~ 334 (358)
.||+...+.+.+..+|+.+.+...
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEE
Confidence 377766655569999998876644
No 136
>PRK03629 tolB translocation protein TolB; Provisional
Probab=31.67 E-value=4.5e+02 Score=24.87 Aligned_cols=186 Identities=10% Similarity=0.060 Sum_probs=90.7
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTES 192 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~ 192 (358)
..+++|+|.-.+..+.+-..+. ......+.|..+....+........+.+++..+++=+.+.. .+...
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~-----~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-----~~~~~-- 245 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----FPRHN-- 245 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCC-----ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-----CCCCc--
Confidence 3467788776655444422211 13344555654432222221334567788887776655543 21111
Q ss_pred CCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEec-CCCCCCceEEEE-ECCe-eEEEeecccccCCCCcEEE
Q 040165 193 PPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-EACHPRSVSLGV-VGGC-LSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 193 ~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~l~~-~~g~-L~lv~~~~~~~~~~~~~~v 268 (358)
......-+|. |++...... ...|..+|+.+.+...+. .+.. .....- -+|+ |+++. ......+|
T Consensus 246 ~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~--~~~~~wSPDG~~I~f~s------~~~g~~~I 313 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN--NTEPTWFPDSQNLAYTS------DQAGRPQV 313 (429)
T ss_pred CCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCC--cCceEECCCCCEEEEEe------CCCCCceE
Confidence 1112223553 665543221 136888999888776552 2211 111222 2565 44444 22345688
Q ss_pred EEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 269 WVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
|.++-.+ +.-. ++.... .......+ ..+|+ |++..... ..++.+|+++++++.+
T Consensus 314 y~~d~~~--g~~~---~lt~~~-----~~~~~~~~---SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 314 YKVNING--GAPQ---RITWEG-----SQNQDADV---SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred EEEECCC--CCeE---EeecCC-----CCccCEEE---CCCCCEEEEEEccCCCceEEEEECCCCCeEEe
Confidence 9887532 2222 222111 00122333 45566 55544321 2588999999988877
No 137
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=30.82 E-value=4.3e+02 Score=24.29 Aligned_cols=166 Identities=10% Similarity=0.058 Sum_probs=91.0
Q ss_pred eEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEE-ECce-EEEEeecCCCCCCCcEEEEE
Q 040165 145 GYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCL-FNGA-LHWLVSGFHFGSQDPVIIAF 222 (358)
Q Consensus 145 ~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~-~~G~-lywl~~~~~~~~~~~~i~~f 222 (358)
.++|. ++|-++.- -...++.+|+...+.-...... .++.+. +.+.-++ =||+ .|.++.-.. ...+..|
T Consensus 151 ~~tP~-~~~l~v~D-LG~Dri~~y~~~dg~L~~~~~~---~v~~G~-GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y 220 (346)
T COG2706 151 NFTPD-GRYLVVPD-LGTDRIFLYDLDDGKLTPADPA---EVKPGA-GPRHIVFHPNGKYAYLVNELNS----TVDVLEY 220 (346)
T ss_pred eeCCC-CCEEEEee-cCCceEEEEEcccCcccccccc---ccCCCC-CcceEEEcCCCcEEEEEeccCC----EEEEEEE
Confidence 33443 34544443 3567899999988776555431 121111 2233333 3565 455554431 2355556
Q ss_pred ECCCCeeEEe----cCC--CCC--CceEEEE-ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccc
Q 040165 223 DLAEEKFCRV----GEA--CHP--RSVSLGV-VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVR 293 (358)
Q Consensus 223 D~~~~~~~~i----~~P--~~~--~~~~l~~-~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~ 293 (358)
|....++..+ -+| +.+ .-..+-. -+|+...++ .+....|.++..+..+ +.=+.+...+....
T Consensus 221 ~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas-----NRg~dsI~~f~V~~~~--g~L~~~~~~~teg~-- 291 (346)
T COG2706 221 NPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS-----NRGHDSIAVFSVDPDG--GKLELVGITPTEGQ-- 291 (346)
T ss_pred cCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe-----cCCCCeEEEEEEcCCC--CEEEEEEEeccCCc--
Confidence 6666888776 345 222 2233443 388877776 3446688888888754 34444555554431
Q ss_pred cCceeeEEEEeeecCCCcEEEE-EcCcc--eEEEEECCCCeEEEe
Q 040165 294 YHGSLVTLCTATGTDGGDEIIM-INKWR--EFISCNLNERTLEEI 335 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~g~i~~~-~~~~~--~l~~yd~~t~~~~~v 335 (358)
..+-+-+ ...|+.++. ..+.+ .+|.-|.+|+++.++
T Consensus 292 ---~PR~F~i---~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 292 ---FPRDFNI---NPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred ---CCcccee---CCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 1233444 556664443 33333 677778889999988
No 138
>PTZ00334 trans-sialidase; Provisional
Probab=30.60 E-value=4.9e+02 Score=26.99 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=49.8
Q ss_pred EEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEec-CCCCC-CceEEEEEC-CeeEEEeecccccCCCCcEEEEEEcc
Q 040165 197 CLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-EACHP-RSVSLGVVG-GCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 197 v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~-~~~~l~~~~-g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
+.=||.|-+-...........+++.|...++.|..-. .|..+ ....+++.+ |+|.|++.++ ...-.|++-.+
T Consensus 267 ~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~-----dG~RrVYES~D 341 (780)
T PTZ00334 267 QMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACD-----DGRRRVYESGD 341 (780)
T ss_pred EecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeC-----CCCEEEEEECC
Confidence 3447877666443222223457888888788896542 23222 457789995 9999999653 23456777665
Q ss_pred CCCCCceeEE
Q 040165 274 YGVHSSWERL 283 (358)
Q Consensus 274 ~~~~~~W~~~ 283 (358)
...+|++.
T Consensus 342 --mG~tWtEA 349 (780)
T PTZ00334 342 --KGDSWTEA 349 (780)
T ss_pred --CCCChhhC
Confidence 33688873
No 139
>PRK05137 tolB translocation protein TolB; Provisional
Probab=30.25 E-value=4.8e+02 Score=24.68 Aligned_cols=185 Identities=15% Similarity=0.054 Sum_probs=90.0
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE--ccceEEEEEEcCCCceEeccccccccccccc
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS--CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~--~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
..+++++|.-++..+.+..... ......+.|..+ +++... .....+.+++..++..+.+.. .+...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~-----~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~~~l~~-----~~g~~ 248 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS-----LVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQRELVGN-----FPGMT 248 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC-----CeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcEEEeec-----CCCcc
Confidence 3478888887665555543221 133344555433 333332 345678888998888777654 22111
Q ss_pred CCCCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCe-eEEEeecccccCCCCcEE
Q 040165 191 ESPPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGC-LSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 191 ~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~-L~lv~~~~~~~~~~~~~~ 267 (358)
......-+|. +.+...... ...|..+|+.+...+.+ ..+........ .-+|+ |++.. ......+
T Consensus 249 --~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~-spDG~~i~f~s------~~~g~~~ 315 (435)
T PRK05137 249 --FAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAIDTSPSY-SPDGSQIVFES------DRSGSPQ 315 (435)
T ss_pred --cCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCccCceeE-cCCCCEEEEEE------CCCCCCe
Confidence 1122233564 443332221 24688889988776554 22211111111 12555 44433 2233457
Q ss_pred EEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
||.++-.+ +...+ +.... + . ...... ..+|+ |++..... ..++.+|++++..+.+
T Consensus 316 Iy~~d~~g--~~~~~---lt~~~--~--~-~~~~~~---SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 316 LYVMNADG--SNPRR---ISFGG--G--R-YSTPVW---SPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred EEEEECCC--CCeEE---eecCC--C--c-ccCeEE---CCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 78776432 22322 22111 0 0 112223 44566 55554322 2588999887766555
No 140
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=30.23 E-value=4.1e+02 Score=23.95 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=67.4
Q ss_pred EEEEEcCC--CceEecccccccccccccCCCCce-EEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCce
Q 040165 165 LKVFSMKA--FSWRDVHYNLGVKLFYGTESPPKG-CLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSV 241 (358)
Q Consensus 165 ~~vyss~t--~~W~~~~~~~~~~~~~~~~~~~~~-v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~ 241 (358)
-.||.+.. .+|+.+... ... .-... ..-+|.+..++..+ ....+.|.....|.....+..+..-
T Consensus 124 G~iy~T~DgG~tW~~~~~~-----~~g--s~~~~~r~~dG~~vavs~~G------~~~~s~~~G~~~w~~~~r~~~~riq 190 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVVSE-----TSG--SINDITRSSDGRYVAVSSRG------NFYSSWDPGQTTWQPHNRNSSRRIQ 190 (302)
T ss_dssp --EEEESSTTSSEEEEE-S-----------EEEEEE-TTS-EEEEETTS------SEEEEE-TT-SS-EEEE--SSS-EE
T ss_pred CcEEEeCCCCCCeeEcccC-----Ccc--eeEeEEECCCCcEEEEECcc------cEEEEecCCCccceEEccCccceeh
Confidence 45676654 489887651 111 00111 23455544344343 4677888988899888777433222
Q ss_pred EEE-EECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcc
Q 040165 242 SLG-VVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWR 320 (358)
Q Consensus 242 ~l~-~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 320 (358)
.++ ..+|.|.++. ....+..=...+ ..++|.+.. ++... .+ .. ..-++. ..+++++.......
T Consensus 191 ~~gf~~~~~lw~~~-------~Gg~~~~s~~~~--~~~~w~~~~-~~~~~-~~-~~-~ld~a~---~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 191 SMGFSPDGNLWMLA-------RGGQIQFSDDPD--DGETWSEPI-IPIKT-NG-YG-ILDLAY---RPPNEIWAVGGSGT 254 (302)
T ss_dssp EEEE-TTS-EEEEE-------TTTEEEEEE-TT--EEEEE---B--TTSS----S--EEEEEE---SSSS-EEEEESTT-
T ss_pred hceecCCCCEEEEe-------CCcEEEEccCCC--Ccccccccc-CCccc-Cc-ee-eEEEEe---cCCCCEEEEeCCcc
Confidence 233 2488998887 234554443222 336888722 22211 01 00 233344 44455777666553
Q ss_pred eEEEEECCCCeEEEeeccc---cccceeeeeee
Q 040165 321 EFISCNLNERTLEEIYRPN---FDWCETVSYTE 350 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v~~~~---~~~~~~~~y~~ 350 (358)
+++=.=.-++|++. ... +..++.+.|..
T Consensus 255 -l~~S~DgGktW~~~-~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 255 -LLVSTDGGKTWQKD-RVGENVPSNLYRIVFVN 285 (302)
T ss_dssp -EEEESSTTSS-EE--GGGTTSSS---EEEEEE
T ss_pred -EEEeCCCCccceEC-ccccCCCCceEEEEEcC
Confidence 66666677899998 553 34455555543
No 141
>PRK00178 tolB translocation protein TolB; Provisional
Probab=28.62 E-value=5e+02 Score=24.39 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=87.5
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCC
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPP 194 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~ 194 (358)
++++.|...+..+.+-.... ......+.|..+....+........+.+++..++.-+.+.. .+.. ...
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-----~~g~--~~~ 247 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-----FEGL--NGA 247 (430)
T ss_pred EEEEECCCCCCceEEecCCC-----ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-----CCCC--cCC
Confidence 46677776554433322111 12333445544322111111234567888888887766553 1110 001
Q ss_pred ceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEec-CCCCCCceEEEEECCe-eEEEeecccccCCCCcEEEEEE
Q 040165 195 KGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-EACHPRSVSLGVVGGC-LSLNVCCSNCVDKTTDFELWVM 271 (358)
Q Consensus 195 ~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~l~~~~g~-L~lv~~~~~~~~~~~~~~vW~l 271 (358)
....-+|. +++...... ...|..+|+.++..+.+. .+....... ..-+|+ |++.. ......+||.+
T Consensus 248 ~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~~~~-~spDg~~i~f~s------~~~g~~~iy~~ 316 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDTEPF-WGKDGRTLYFTS------DRGGKPQIYKV 316 (430)
T ss_pred eEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcCCeE-ECCCCCEEEEEE------CCCCCceEEEE
Confidence 11223554 444333221 247888999988876652 221111111 122554 44443 22334567777
Q ss_pred ccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc--ceEEEEECCCCeEEEe
Q 040165 272 KQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW--REFISCNLNERTLEEI 335 (358)
Q Consensus 272 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~--~~l~~yd~~t~~~~~v 335 (358)
+-.+ +++.++. ... . ......+ ..+|+ |++..... ..++.+|+++++.+.+
T Consensus 317 d~~~--g~~~~lt---~~~---~--~~~~~~~---Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 317 NVNG--GRAERVT---FVG---N--YNARPRL---SADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred ECCC--CCEEEee---cCC---C--CccceEE---CCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence 6422 3454432 110 0 1122233 44566 66654322 1599999999988776
No 142
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=28.37 E-value=53 Score=23.19 Aligned_cols=18 Identities=0% Similarity=0.115 Sum_probs=15.6
Q ss_pred eEEEEECCCCeEEEeeccc
Q 040165 321 EFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v~~~~ 339 (358)
.+.+||.+.+.|+.+ .+.
T Consensus 50 s~~yfDve~~~WRSF-k~d 67 (83)
T PF10902_consen 50 SVRYFDVEKKGWRSF-KID 67 (83)
T ss_pred eEEEEEeccCceeee-ehe
Confidence 699999999999998 554
No 143
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=27.75 E-value=4.4e+02 Score=23.49 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=90.6
Q ss_pred EEEeecceEEEEEe----------CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEE
Q 040165 98 IIGSCNGLVCMALH----------GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKV 167 (358)
Q Consensus 98 ~~~s~~Gll~~~~~----------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~v 167 (358)
++++..+.+++... +++++-+||-.++....+-.-.. ....-.+-|.|...+..++.. .....+++
T Consensus 101 f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~---~~WVscvrfsP~~~~p~Ivs~-s~DktvKv 176 (315)
T KOG0279|consen 101 FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH---REWVSCVRFSPNESNPIIVSA-SWDKTVKV 176 (315)
T ss_pred EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCC---cCcEEEEEEcCCCCCcEEEEc-cCCceEEE
Confidence 55555555554421 45678899999888877755431 112455677888766666655 35677888
Q ss_pred EEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEEC
Q 040165 168 FSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVVG 247 (358)
Q Consensus 168 yss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~~ 247 (358)
.++++-+=+.... ......+.-.|.-||.+.--++.+ ..++-.|+...+- ...++.......++..-
T Consensus 177 Wnl~~~~l~~~~~------gh~~~v~t~~vSpDGslcasGgkd------g~~~LwdL~~~k~-lysl~a~~~v~sl~fsp 243 (315)
T KOG0279|consen 177 WNLRNCQLRTTFI------GHSGYVNTVTVSPDGSLCASGGKD------GEAMLWDLNEGKN-LYSLEAFDIVNSLCFSP 243 (315)
T ss_pred EccCCcchhhccc------cccccEEEEEECCCCCEEecCCCC------ceEEEEEccCCce-eEeccCCCeEeeEEecC
Confidence 8887765443221 111111234456678776665553 5788888887655 22233111234566667
Q ss_pred CeeEEEeecccccCCCCcEEEEEEcc
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
.+..+..+ ....+.||.++.
T Consensus 244 nrywL~~a------t~~sIkIwdl~~ 263 (315)
T KOG0279|consen 244 NRYWLCAA------TATSIKIWDLES 263 (315)
T ss_pred CceeEeec------cCCceEEEeccc
Confidence 77666652 345799999986
No 144
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=26.98 E-value=2.1e+02 Score=21.19 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=26.7
Q ss_pred ceEEEEcccccc-eeccCCCCCCCCCCceEEEeEeCCCCCeEEEEE
Q 040165 114 KDFFIYNPSTRA-HKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAV 158 (358)
Q Consensus 114 ~~~~V~NP~T~~-~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~ 158 (358)
-+++..||-+++ |... .. .-.+.+..|...+.|.|...
T Consensus 16 A~v~~~~p~~~~~W~~~-~~------~g~v~~v~d~~~~~y~I~~~ 54 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-KG------TGVVCFVKDNSRRSYFIRLY 54 (111)
T ss_dssp EEEEEEETTTSESEEES-SS------EEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-Ce------EEEEEEEEECCCCEEEEEEE
Confidence 357888998888 9886 11 11566777888888877665
No 145
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=26.93 E-value=91 Score=23.83 Aligned_cols=26 Identities=4% Similarity=-0.082 Sum_probs=19.5
Q ss_pred EEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 312 EIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 312 i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
|+...... .+|.||.++++|++. +++
T Consensus 22 Il~~a~~v-~vY~f~~~~~~W~K~-~iE 47 (122)
T PF06058_consen 22 ILDTASHV-VVYKFDHETNEWEKT-DIE 47 (122)
T ss_dssp EEEEEEEE-EEEEEETTTTEEEEE-EEE
T ss_pred HHhhCCeE-EEEeecCCCCcEeec-CcE
Confidence 44443333 499999999999999 887
No 146
>PTZ00420 coronin; Provisional
Probab=26.35 E-value=6.6e+02 Score=25.05 Aligned_cols=164 Identities=9% Similarity=0.048 Sum_probs=80.9
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEecccccccccccccCCCCceEE--ECceEEEEeecCCCCCCCc
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNLGVKLFYGTESPPKGCL--FNGALHWLVSGFHFGSQDP 217 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~ 217 (358)
...+.+.|.. .+.++.. .....+.+++.+++. -..+.. + ..-.++. -+|.+...+..+ .
T Consensus 128 V~sVaf~P~g-~~iLaSg-S~DgtIrIWDl~tg~~~~~i~~------~----~~V~SlswspdG~lLat~s~D------~ 189 (568)
T PTZ00420 128 ISIIDWNPMN-YYIMCSS-GFDSFVNIWDIENEKRAFQINM------P----KKLSSLKWNIKGNLLSGTCVG------K 189 (568)
T ss_pred EEEEEECCCC-CeEEEEE-eCCCeEEEEECCCCcEEEEEec------C----CcEEEEEECCCCCEEEEEecC------C
Confidence 3445666653 3333332 245678888888764 111111 1 0111222 357665444432 4
Q ss_pred EEEEEECCCCeeEE-ecCCCCC---CceEEEE--ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCc
Q 040165 218 VIIAFDLAEEKFCR-VGEACHP---RSVSLGV--VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIM 291 (358)
Q Consensus 218 ~i~~fD~~~~~~~~-i~~P~~~---~~~~l~~--~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~ 291 (358)
.|-.+|+.+++-.. +...... ....+.. .++...+.++... ...+.+.+|.+...+ +-.....++...
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~--~~~R~VkLWDlr~~~---~pl~~~~ld~~~- 263 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK--NNMREMKLWDLKNTT---SALVTMSIDNAS- 263 (568)
T ss_pred EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC--CCccEEEEEECCCCC---CceEEEEecCCc-
Confidence 78999999865422 2222111 1111111 2445444443221 113579999987522 222222232211
Q ss_pred cccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 292 VRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
....|... ...|.+|+...+...+.+||..++....+
T Consensus 264 ----~~L~p~~D---~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 264 ----APLIPHYD---ESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred ----cceEEeee---CCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 11334444 66677777775555699999988876666
No 147
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=26.33 E-value=8.7e+02 Score=26.42 Aligned_cols=223 Identities=9% Similarity=0.006 Sum_probs=111.0
Q ss_pred eEEEeecceEEEEEeCCceEEEEcccccceeccCCCCCC-CC--------CCceEEEeEeCCCCCeEEEEEEccceEEEE
Q 040165 97 VIIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDIS-LG--------SPYLYGFGYDSSTDDYKVLAVSCLRVLLKV 167 (358)
Q Consensus 97 ~~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~-~~--------~~~~~~~~~d~~~~~ykvv~~~~~~~~~~v 167 (358)
..+++.+|.+.+......++.++++..+....+...... .. ...-.++.+|+..+...|.- .....+.+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD--t~n~~Ir~ 650 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD--TENHALRE 650 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe--CCCceEEE
Confidence 366667887777745778899999875544444331100 00 01135566776544322211 23345677
Q ss_pred EEcCCCceEecccc--cccc-----cc-cccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC-
Q 040165 168 FSMKAFSWRDVHYN--LGVK-----LF-YGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA- 235 (358)
Q Consensus 168 yss~t~~W~~~~~~--~~~~-----~~-~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P- 235 (358)
++..++.=+.+... .+.. .. .........+.+ +|.+|+..... ..|..+|..+.....+...
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~------~~I~v~d~~~g~v~~~~G~G 724 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ------HQIWEYNISDGVTRVFSGDG 724 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC------CeEEEEECCCCeEEEEecCC
Confidence 77665543222110 0000 00 000011223433 57888876553 5789999888766543211
Q ss_pred ----CC-------C--CceEEEEE-CC-eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEE-Ee-e--cCCccc---
Q 040165 236 ----CH-------P--RSVSLGVV-GG-CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLT-KI-D--NDIMVR--- 293 (358)
Q Consensus 236 ----~~-------~--~~~~l~~~-~g-~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~-~i-~--~~~~~~--- 293 (358)
.. . .-..++.. +| .|+++. .....+.+|.++..+ ..+.--. .. + ...+..
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD------s~n~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD------SESSSIRALDLKTGG--SRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEE------CCCCeEEEEECCCCc--EEEEEecccccCcccccccCCCC
Confidence 00 0 11234443 44 477776 235678888876521 1121100 00 0 000000
Q ss_pred ---cCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEee
Q 040165 294 ---YHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIY 336 (358)
Q Consensus 294 ---~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~ 336 (358)
......|.++.+ ..+|+||+.....+.+..||+++++...+.
T Consensus 797 ~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 797 VGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred chhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 001123444433 456789888876667999999999887663
No 148
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=25.36 E-value=6.3e+02 Score=24.46 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=81.6
Q ss_pred cceEEEEEEcCCCceEeccccc--c--cccccccC---CCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEec
Q 040165 161 LRVLLKVFSMKAFSWRDVHYNL--G--VKLFYGTE---SPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG 233 (358)
Q Consensus 161 ~~~~~~vyss~t~~W~~~~~~~--~--~~~~~~~~---~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~ 233 (358)
....+.+|++++++=+.++..+ . ..++.... ....-..++|.++.+...+ ....+++-.+---.+.
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~iqv~ 357 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYSIQVG 357 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCeeEEcC
Confidence 4678999999999887776421 0 01111110 1133456788888888775 4455554443332222
Q ss_pred CCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-E
Q 040165 234 EACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-E 312 (358)
Q Consensus 234 ~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i 312 (358)
-+..-.+.++.+....+.+.+ .+...+.|+-.+.. ++.++... + ...-.+++ ..+|+ +
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt------~dgD~l~iyd~~~~-------e~kr~e~~-l----g~I~av~v---s~dGK~~ 416 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGT------NDGDKLGIYDKDGG-------EVKRIEKD-L----GNIEAVKV---SPDGKKV 416 (668)
T ss_pred CCCceEEEEEccCCcceEEec------cCCceEEEEecCCc-------eEEEeeCC-c----cceEEEEE---cCCCcEE
Confidence 222113445555544433333 34568888877652 23333321 1 01344555 67788 5
Q ss_pred EEEEcCcceEEEEECCCCeEEEe
Q 040165 313 IIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 313 ~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
++....- .++++|++|++.+.+
T Consensus 417 vvaNdr~-el~vididngnv~~i 438 (668)
T COG4946 417 VVANDRF-ELWVIDIDNGNVRLI 438 (668)
T ss_pred EEEcCce-EEEEEEecCCCeeEe
Confidence 5554444 599999999999998
No 149
>PRK05137 tolB translocation protein TolB; Provisional
Probab=25.16 E-value=5.9e+02 Score=24.06 Aligned_cols=187 Identities=11% Similarity=0.051 Sum_probs=90.4
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
+...++++|+.|++...+...+.. .....+.|..+. -++... .....+.+++.+++.-+.+... +..
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g~-----~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-----~~~- 291 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPGM-----TFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTTTRLTDS-----PAI- 291 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCCc-----ccCcEECCCCCE-EEEEEecCCCceEEEEECCCCceEEccCC-----CCc-
Confidence 346799999999988777543321 122344554332 222221 3345666778888776665431 110
Q ss_pred CCCCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEE-ECCeeEEEeecccccCCCCcEEE
Q 040165 191 ESPPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGV-VGGCLSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 191 ~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~-~~g~L~lv~~~~~~~~~~~~~~v 268 (358)
.......-+|. +++...... ...|..+|+.++..+.+...... ...... -+|+..++.. .......+
T Consensus 292 -~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~-~~~~~~SpdG~~ia~~~-----~~~~~~~i 360 (435)
T PRK05137 292 -DTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGR-YSTPVWSPRGDLIAFTK-----QGGGQFSI 360 (435)
T ss_pred -cCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCc-ccCeEECCCCCEEEEEE-----cCCCceEE
Confidence 01112223454 444332211 24688888888776665322111 111122 2554444431 12234566
Q ss_pred EEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc-----ceEEEEECCCCeEEEe
Q 040165 269 WVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW-----REFISCNLNERTLEEI 335 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~-----~~l~~yd~~t~~~~~v 335 (358)
|.++-.+ +.. +. +.... ....+ .+ ..+|+ |++..... ..++.+|+++++.+.+
T Consensus 361 ~~~d~~~--~~~-~~--lt~~~-----~~~~p-~~---spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 361 GVMKPDG--SGE-RI--LTSGF-----LVEGP-TW---APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EEEECCC--Cce-Ee--ccCCC-----CCCCC-eE---CCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 6665422 222 21 11111 11222 33 45666 55544321 2499999998888776
No 150
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=24.72 E-value=3.2e+02 Score=23.84 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCcEEEEEcCcceEEEEECCCCeEE-Eeeccc
Q 040165 309 GGDEIIMINKWREFISCNLNERTLE-EIYRPN 339 (358)
Q Consensus 309 ~g~i~~~~~~~~~l~~yd~~t~~~~-~v~~~~ 339 (358)
+|.+++.......++.||+++++.. +. .++
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~-~L~ 108 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARR-ELP 108 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEE-ECC
Confidence 6778888776667999999999998 65 555
No 151
>PF15408 PH_7: Pleckstrin homology domain
Probab=24.24 E-value=12 Score=26.36 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=19.1
Q ss_pred ccceeeeecccccccccCChHHHH
Q 040165 20 KSLLRFKCVSKEWHCLISDPKFAL 43 (358)
Q Consensus 20 ~~l~r~r~VcK~W~~li~~p~F~~ 43 (358)
+..+..+-|||+|-..+.+|+|..
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhhh
Confidence 345566789999999999999864
No 152
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=23.82 E-value=2.6e+02 Score=24.13 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=37.2
Q ss_pred eecceEEEEEeCCceEEEEcccccceecc--CCCCCCCCCCceEEEeEeCCCCCeEEEE
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKL--PDPDISLGSPYLYGFGYDSSTDDYKVLA 157 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~l--P~~~~~~~~~~~~~~~~d~~~~~ykvv~ 157 (358)
..+|.|.-. ....++|..||.|+.-..+ ..+..... ...+++.|.|.-++-+||.
T Consensus 36 pa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~al~-g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGL-GSTGRLYTINPATGAATPVGASPLTVALS-GTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEE-eCCCcEEEEECCCCeEEEeeccccccccc-CceEEEecCcccCcEEEEc
Confidence 345666444 4778899999999998777 33332221 1267777888888888875
No 153
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=23.67 E-value=3.6e+02 Score=24.57 Aligned_cols=56 Identities=21% Similarity=0.114 Sum_probs=0.0
Q ss_pred ccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCC-CCCCceEEEEECCeeEEEe
Q 040165 189 GTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEA-CHPRSVSLGVVGGCLSLNV 254 (358)
Q Consensus 189 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P-~~~~~~~l~~~~g~L~lv~ 254 (358)
+....+++-..+|.+|.+.... ..+..+|++++++..+ .+| .......+ |++.+|+
T Consensus 201 GLsmPhSPRWhdgrLwvldsgt------Gev~~vD~~~G~~e~Va~vpG~~rGL~f~----G~llvVg 258 (335)
T TIGR03032 201 GLSMPHSPRWYQGKLWLLNSGR------GELGYVDPQAGKFQPVAFLPGFTRGLAFA----GDFAFVG 258 (335)
T ss_pred CccCCcCCcEeCCeEEEEECCC------CEEEEEcCCCCcEEEEEECCCCCccccee----CCEEEEE
No 154
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.29 E-value=5.2e+02 Score=27.24 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=41.1
Q ss_pred CCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccccc
Q 040165 262 KTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPNFD 341 (358)
Q Consensus 262 ~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~~~ 341 (358)
+.+.+.+|+|.++ ..|+.- ++. ++.+....+-+ |+ +.++++.....+.+-++|+..++=-+.++-..+
T Consensus 226 DDRqVKlWrmnet---KaWEvD-tcr-----gH~nnVssvlf--hp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrend 293 (1202)
T KOG0292|consen 226 DDRQVKLWRMNET---KAWEVD-TCR-----GHYNNVSSVLF--HP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRREND 293 (1202)
T ss_pred CcceeeEEEeccc---cceeeh-hhh-----cccCCcceEEe--cC-ccceeEecCCCccEEEEecccccceeeeeccCC
Confidence 4578999999873 578542 221 22222333333 23 445666655555688999987765444233333
Q ss_pred cceeee
Q 040165 342 WCETVS 347 (358)
Q Consensus 342 ~~~~~~ 347 (358)
.++++-
T Consensus 294 RFW~la 299 (1202)
T KOG0292|consen 294 RFWILA 299 (1202)
T ss_pred eEEEEE
Confidence 444443
No 155
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=23.18 E-value=6.1e+02 Score=23.51 Aligned_cols=139 Identities=12% Similarity=0.013 Sum_probs=69.7
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTES 192 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~ 192 (358)
...++++|..|++...+...+.. .....+.|..+.+-+..-......+.+++.+++..+.+... .. . .
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~-----~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~-~-~ 280 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGM-----NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-----PG-I-D 280 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCC-----ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC-----CC-C-C
Confidence 35788999998877665443211 22244555543222221113345677778888777665431 10 0 0
Q ss_pred CCceEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEE-EECCeeEEEeecccccCCCCcEEEEE
Q 040165 193 PPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLG-VVGGCLSLNVCCSNCVDKTTDFELWV 270 (358)
Q Consensus 193 ~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~-~~~g~L~lv~~~~~~~~~~~~~~vW~ 270 (358)
......-+|. +++...... ...|..+|+.+..+..+...... ..... .-+|+..++.. ......+|+.
T Consensus 281 ~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~i~~~~-----~~~~~~~i~~ 350 (417)
T TIGR02800 281 TEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGY-NASPSWSPDGDLIAFVH-----REGGGFNIAV 350 (417)
T ss_pred CCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC-ccCeEECCCCCEEEEEE-----ccCCceEEEE
Confidence 0111122554 555443321 23788889888877665433111 11122 23666666652 2234566777
Q ss_pred Ecc
Q 040165 271 MKQ 273 (358)
Q Consensus 271 l~~ 273 (358)
++-
T Consensus 351 ~d~ 353 (417)
T TIGR02800 351 MDL 353 (417)
T ss_pred EeC
Confidence 764
No 156
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.05 E-value=5.8e+02 Score=23.22 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=59.3
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEECCee---EEEeecccccCCCCcEEEE
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVVGGCL---SLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~~g~L---~lv~~~~~~~~~~~~~~vW 269 (358)
-.++.++|-.-.-++. .+.|-.||+.+..=.- +--|.+ .+...-..+.+ .++.+ .+.+.+.+|
T Consensus 46 itavAVs~~~~aSGss------DetI~IYDm~k~~qlg~ll~Hag--sitaL~F~~~~S~shLlS~-----sdDG~i~iw 112 (362)
T KOG0294|consen 46 ITALAVSGPYVASGSS------DETIHIYDMRKRKQLGILLSHAG--SITALKFYPPLSKSHLLSG-----SDDGHIIIW 112 (362)
T ss_pred eeEEEecceeEeccCC------CCcEEEEeccchhhhcceecccc--ceEEEEecCCcchhheeee-----cCCCcEEEE
Confidence 4567788764333333 3689999988753322 222211 11112222222 34442 235689999
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.. ++|..+.++....- ...-+++ ...|+|-+..++.+.+-..|+-+++-..+
T Consensus 113 ~~------~~W~~~~slK~H~~-----~Vt~lsi---HPS~KLALsVg~D~~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 113 RV------GSWELLKSLKAHKG-----QVTDLSI---HPSGKLALSVGGDQVLRTWNLVRGRVAFV 164 (362)
T ss_pred Ec------CCeEEeeeeccccc-----ccceeEe---cCCCceEEEEcCCceeeeehhhcCcccee
Confidence 75 46988888765431 1344455 44566555444433344455544444443
No 157
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=23.05 E-value=3.4e+02 Score=20.51 Aligned_cols=89 Identities=10% Similarity=0.085 Sum_probs=50.0
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEE-ECCCCeeEEe--cCCC--
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAF-DLAEEKFCRV--GEAC-- 236 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~f-D~~~~~~~~i--~~P~-- 236 (358)
...+-.|+.++.+|+.+..+ ..+........=+..+|+|-.+............|.+. |..+++|+.. .+|.
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P---~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~ 95 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLP---EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPSW 95 (129)
T ss_pred CcEEEEEEcCCceEEEEEee---eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChHH
Confidence 34566678888889887751 00111112244467899999887765322112355555 6778899764 4551
Q ss_pred -C---CCc--eEEEEECCeeEEE
Q 040165 237 -H---PRS--VSLGVVGGCLSLN 253 (358)
Q Consensus 237 -~---~~~--~~l~~~~g~L~lv 253 (358)
+ +.. ..-+.-+|.+.++
T Consensus 96 ~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 96 QHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred hcccCCcEEEEEEEcCCCEEEEE
Confidence 1 112 2222337888777
No 158
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=23.01 E-value=5.6e+02 Score=23.09 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=40.1
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCN 326 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd 326 (358)
+|..++-++ ....+-+|...++. +.-|+.. ++. -.++.+= +..++..++.....+++..+|
T Consensus 58 ~gs~~aSgG------~Dr~I~LWnv~gdc-eN~~~lk---------gHs--gAVM~l~-~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 58 DGSCFASGG------SDRAIVLWNVYGDC-ENFWVLK---------GHS--GAVMELH-GMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCCeEeecC------CcceEEEEeccccc-cceeeec---------ccc--ceeEeee-eccCCCEEEEecCCceEEEEe
Confidence 666555552 34689999965433 2567655 111 2222220 045666666655555799999
Q ss_pred CCCCeEEE
Q 040165 327 LNERTLEE 334 (358)
Q Consensus 327 ~~t~~~~~ 334 (358)
.+|++-.+
T Consensus 119 ~~tG~~~r 126 (338)
T KOG0265|consen 119 AETGKRIR 126 (338)
T ss_pred cccceeee
Confidence 99987644
No 159
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=22.67 E-value=26 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCChHHHHHHHHhccCC-cccceeeeecccccccccCCh
Q 040165 2 WSIPKDILEAEILCRLP-IKSLLRFKCVSKEWHCLISDP 39 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp-~~~l~r~r~VcK~W~~li~~p 39 (358)
.+||.+++. +||.||| -.+|.....|-..-..++++.
T Consensus 203 ~dLP~e~vl-~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 203 HDLPLECVL-NILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred ccchHHHHH-HHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 479999999 9999999 788888887765555555443
No 160
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=22.16 E-value=3.2e+02 Score=19.97 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=28.3
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEE
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAV 158 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~ 158 (358)
.+++..||-+++|...- . ....+.+..|+..+.|.+...
T Consensus 9 a~v~~~~~~~~~W~~~~-~-----~~g~v~~~~d~~~~~y~i~~~ 47 (104)
T cd00837 9 AQVYTADPSTGKWVPAS-G-----GTGAVSLVKDSTRNTYRIRGV 47 (104)
T ss_pred EEEEEECCCCCceEECC-C-----CeEEEEEEEECCCCEEEEEEE
Confidence 46788899999998753 1 111667888888888887765
No 161
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.89 E-value=1.4e+02 Score=15.75 Aligned_cols=19 Identities=5% Similarity=-0.029 Sum_probs=11.9
Q ss_pred cCCCcEEEEEcCcceEEEE
Q 040165 307 TDGGDEIIMINKWREFISC 325 (358)
Q Consensus 307 ~~~g~i~~~~~~~~~l~~y 325 (358)
..+|+|++...+..++..|
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 4677788877655545443
No 162
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=21.84 E-value=2e+02 Score=19.80 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.3
Q ss_pred EEEcCCCceEec
Q 040165 167 VFSMKAFSWRDV 178 (358)
Q Consensus 167 vyss~t~~W~~~ 178 (358)
.|+.+||+.-++
T Consensus 33 lfDPETGqYVeV 44 (75)
T PF15232_consen 33 LFDPETGQYVEV 44 (75)
T ss_pred eecCCCCcEEEE
Confidence 344444444433
No 163
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=21.43 E-value=1.4e+02 Score=19.79 Aligned_cols=15 Identities=0% Similarity=0.054 Sum_probs=13.3
Q ss_pred eEEEEECCCCeEEEe
Q 040165 321 EFISCNLNERTLEEI 335 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v 335 (358)
.+|.||++|++++-+
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 699999999998765
No 164
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.96 E-value=4.3e+02 Score=24.97 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=15.5
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEcc
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
+|+++++. . ....+.+|.+++
T Consensus 406 d~k~~Lvn-----L-~~qei~LWDl~e 426 (519)
T KOG0293|consen 406 DGKLALVN-----L-QDQEIHLWDLEE 426 (519)
T ss_pred CCcEEEEE-----c-ccCeeEEeecch
Confidence 78888887 3 356788898875
No 165
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=2.4e+02 Score=27.56 Aligned_cols=101 Identities=10% Similarity=0.070 Sum_probs=52.6
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce----Eeccccccccccccc
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW----RDVHYNLGVKLFYGT 190 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W----~~~~~~~~~~~~~~~ 190 (358)
-+.+|+|..++-.. .+....+....-..-+-+...+..++++..-..+++.|+.+...| +.... ..|...
T Consensus 805 giHlWDPFigr~La--q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna----~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLA--QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA----PGPNAL 878 (1034)
T ss_pred cceeecccccchhH--hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC----CCCchh
Confidence 45789998776432 222222221111123334445666666655678899999998765 44332 123221
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCe
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEK 228 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~ 228 (358)
..++.+..+=.|+...-. ...|...|.++++
T Consensus 879 ---~R~iaVa~~GN~lAa~LS----nGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 879 ---TRAIAVADKGNKLAAALS----NGCIAILDARNGK 909 (1034)
T ss_pred ---eeEEEeccCcchhhHHhc----CCcEEEEecCCCc
Confidence 233444444344433211 1478888888765
Done!