Query 040165
Match_columns 358
No_of_seqs 139 out of 1516
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 99.6 6.7E-13 2.3E-17 118.4 23.2 212 98-335 56-282 (302)
2 3ii7_A Kelch-like protein 7; p 99.6 3.5E-13 1.2E-17 120.5 20.9 214 98-339 50-282 (306)
3 1zgk_A Kelch-like ECH-associat 99.6 6.9E-13 2.4E-17 118.8 22.6 213 98-339 65-297 (308)
4 2woz_A Kelch repeat and BTB do 99.6 5.9E-13 2E-17 119.8 21.7 194 116-335 80-293 (318)
5 4asc_A Kelch repeat and BTB do 99.5 4.5E-13 1.5E-17 120.4 20.0 195 115-335 68-283 (315)
6 2vpj_A Kelch-like protein 12; 99.5 1.6E-12 5.4E-17 115.9 22.9 213 98-339 57-288 (301)
7 3ii7_A Kelch-like protein 7; p 99.5 1.6E-12 5.4E-17 116.2 21.8 201 113-338 23-234 (306)
8 4asc_A Kelch repeat and BTB do 99.5 4.6E-12 1.6E-16 113.8 21.9 202 113-338 12-230 (315)
9 2vpj_A Kelch-like protein 12; 99.4 1E-11 3.6E-16 110.5 20.4 196 114-338 31-240 (301)
10 2xn4_A Kelch-like protein 2; s 99.4 1.1E-11 3.6E-16 110.6 19.7 196 114-336 30-236 (302)
11 2woz_A Kelch repeat and BTB do 99.4 2.2E-11 7.5E-16 109.4 21.1 209 104-338 16-240 (318)
12 1zgk_A Kelch-like ECH-associat 99.4 1E-11 3.4E-16 111.2 18.7 199 113-338 38-249 (308)
13 2uvk_A YJHT; unknown function, 99.4 9E-11 3.1E-15 107.1 21.9 221 98-339 14-304 (357)
14 2uvk_A YJHT; unknown function, 99.3 2.8E-10 9.6E-15 103.8 21.3 214 98-335 60-348 (357)
15 2zwa_A Leucine carboxyl methyl 99.2 1.1E-09 3.7E-14 108.8 20.8 217 99-339 393-644 (695)
16 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 5.4E-11 1.9E-15 76.6 0.0 41 1-42 9-49 (53)
17 2e31_A FBS1, F-box only protei 99.0 9.4E-11 3.2E-15 102.3 1.0 48 1-49 51-99 (297)
18 1k3i_A Galactose oxidase precu 98.9 6E-08 2.1E-12 95.8 20.6 108 115-232 220-329 (656)
19 1k3i_A Galactose oxidase precu 98.8 8.2E-08 2.8E-12 94.8 15.1 198 116-335 168-384 (656)
20 2ovr_B FBW7, F-BOX/WD repeat p 98.8 2.2E-06 7.6E-11 80.0 24.2 281 1-335 19-314 (445)
21 3v7d_B Cell division control p 98.8 1.4E-06 5E-11 81.6 23.0 44 2-46 16-60 (464)
22 1p22_A F-BOX/WD-repeat protein 98.7 9.9E-07 3.4E-11 82.3 19.9 286 2-335 12-331 (435)
23 2zwa_A Leucine carboxyl methyl 98.7 1.7E-07 5.8E-12 93.0 14.6 162 162-336 411-590 (695)
24 3l2o_B F-box only protein 4; s 97.8 2E-06 6.8E-11 74.3 -1.3 47 2-49 6-52 (312)
25 2ast_B S-phase kinase-associat 97.2 4.4E-05 1.5E-09 68.4 -0.7 39 1-40 9-47 (336)
26 2p1m_B Transport inhibitor res 96.5 0.00028 9.5E-09 68.3 -1.3 34 1-35 6-40 (594)
27 3dsm_A Uncharacterized protein 96.1 0.64 2.2E-05 40.8 24.7 196 103-338 2-221 (328)
28 2z2n_A Virginiamycin B lyase; 96.0 0.64 2.2E-05 39.5 20.4 192 98-333 104-299 (299)
29 3ogk_B Coronatine-insensitive 95.8 0.0012 4.2E-08 63.7 -0.7 32 3-35 15-47 (592)
30 1l0q_A Surface layer protein; 95.6 1.2 4E-05 39.7 21.4 188 105-335 3-195 (391)
31 3mbr_X Glutamine cyclotransfer 95.2 0.79 2.7E-05 38.6 14.8 115 197-338 27-142 (243)
32 1l0q_A Surface layer protein; 94.8 2 6.9E-05 38.1 21.2 193 105-338 87-284 (391)
33 3hfq_A Uncharacterized protein 94.2 2.7 9.1E-05 36.7 18.5 121 200-335 50-178 (347)
34 3dsm_A Uncharacterized protein 94.1 2.7 9.4E-05 36.7 24.4 200 102-333 52-257 (328)
35 3jro_A Fusion protein of prote 94.0 5.2 0.00018 39.6 20.5 188 112-331 29-240 (753)
36 3g4e_A Regucalcin; six bladed 94.0 2.6 8.9E-05 36.1 23.4 208 100-339 21-239 (297)
37 3nol_A Glutamine cyclotransfer 93.8 1.1 3.8E-05 38.1 12.4 110 197-334 49-160 (262)
38 3v65_B Low-density lipoprotein 93.7 3.8 0.00013 36.9 22.7 189 103-333 87-281 (386)
39 3ei3_B DNA damage-binding prot 93.6 3.6 0.00012 36.4 21.3 188 111-332 93-285 (383)
40 3jrp_A Fusion protein of prote 93.3 3.8 0.00013 35.7 21.7 187 112-330 31-241 (379)
41 2dg1_A DRP35, lactonase; beta 93.3 3.7 0.00013 35.5 21.0 209 101-338 53-271 (333)
42 3q7m_A Lipoprotein YFGL, BAMB; 93.2 4.2 0.00015 36.0 20.7 145 162-338 197-346 (376)
43 1nir_A Nitrite reductase; hemo 93.1 6.1 0.00021 37.4 20.4 197 101-338 146-364 (543)
44 1rwi_B Serine/threonine-protei 93.1 3.4 0.00012 34.4 17.4 194 100-335 31-228 (270)
45 3u4y_A Uncharacterized protein 93.0 4 0.00014 35.1 23.0 192 103-332 9-210 (331)
46 1ri6_A Putative isomerase YBHE 92.9 4.1 0.00014 35.0 24.7 203 100-336 91-317 (343)
47 1q7f_A NHL, brain tumor CG1071 92.9 3.8 0.00013 34.5 23.1 201 101-335 38-244 (286)
48 3v64_C Agrin; beta propeller, 92.6 5.2 0.00018 35.4 24.0 191 103-335 44-240 (349)
49 3dwl_C Actin-related protein 2 92.6 5 0.00017 35.2 15.9 193 112-332 31-239 (377)
50 4e54_B DNA damage-binding prot 92.1 6.6 0.00023 35.6 17.5 196 103-332 131-330 (435)
51 1rwi_B Serine/threonine-protei 92.1 4.6 0.00016 33.5 21.6 189 101-331 75-266 (270)
52 3jrp_A Fusion protein of prote 92.0 5.7 0.0002 34.6 19.5 199 104-335 69-294 (379)
53 2qc5_A Streptogramin B lactona 91.8 5.1 0.00018 33.6 22.1 195 98-335 25-223 (300)
54 3u4y_A Uncharacterized protein 91.7 5.8 0.0002 34.0 20.3 192 115-338 109-313 (331)
55 2z2n_A Virginiamycin B lyase; 91.7 5.3 0.00018 33.5 22.0 195 98-335 20-218 (299)
56 3nok_A Glutaminyl cyclase; bet 91.7 2.4 8.1E-05 36.2 11.6 110 198-338 62-173 (268)
57 4gga_A P55CDC, cell division c 91.6 7.5 0.00026 35.0 22.1 199 101-335 114-316 (420)
58 3mbr_X Glutamine cyclotransfer 91.4 5.8 0.0002 33.3 19.8 164 140-339 22-189 (243)
59 4aow_A Guanine nucleotide-bind 91.2 6.5 0.00022 33.7 18.2 139 161-331 193-339 (340)
60 3sjl_D Methylamine dehydrogena 91.2 4.6 0.00016 36.5 13.7 116 200-335 237-369 (386)
61 3p5b_L Low density lipoprotein 91.1 8.5 0.00029 34.8 20.3 192 105-335 85-283 (400)
62 3q7m_A Lipoprotein YFGL, BAMB; 91.0 7.9 0.00027 34.2 23.5 192 98-335 98-302 (376)
63 3hfq_A Uncharacterized protein 90.8 7.5 0.00026 33.7 25.0 164 141-335 143-325 (347)
64 2iwa_A Glutamine cyclotransfer 90.8 7 0.00024 33.3 18.6 164 141-338 23-190 (266)
65 3nol_A Glutamine cyclotransfer 90.7 7 0.00024 33.1 19.8 167 140-339 44-211 (262)
66 2qc5_A Streptogramin B lactona 90.7 6.7 0.00023 32.9 22.1 195 98-335 67-265 (300)
67 1k8k_C P40, ARP2/3 complex 41 90.4 8.2 0.00028 33.5 23.7 202 103-335 19-239 (372)
68 4aez_A CDC20, WD repeat-contai 89.8 10 0.00036 33.7 22.9 196 99-335 99-299 (401)
69 2iwa_A Glutamine cyclotransfer 89.7 8.6 0.0003 32.7 20.5 220 102-356 30-262 (266)
70 3bws_A Protein LP49; two-domai 89.5 11 0.00038 33.6 21.3 197 101-335 178-396 (433)
71 1ijq_A LDL receptor, low-densi 89.4 9.9 0.00034 32.9 24.3 183 112-335 8-201 (316)
72 3vgz_A Uncharacterized protein 89.4 9.7 0.00033 32.8 26.1 204 99-338 96-312 (353)
73 3m0c_C LDL receptor, low-densi 89.4 18 0.00063 36.0 22.8 54 194-254 473-532 (791)
74 1yfq_A Cell cycle arrest prote 89.3 9.6 0.00033 32.6 23.1 207 100-335 64-288 (342)
75 1gxr_A ESG1, transducin-like e 88.5 11 0.00036 32.1 25.1 200 98-335 57-261 (337)
76 4gqb_B Methylosome protein 50; 88.5 12 0.00041 32.8 20.4 197 102-335 92-295 (344)
77 2dg1_A DRP35, lactonase; beta 88.5 11 0.00037 32.4 13.9 116 200-335 55-177 (333)
78 3e5z_A Putative gluconolactona 87.8 12 0.0004 31.7 22.4 199 106-339 42-255 (296)
79 3nok_A Glutaminyl cyclase; bet 87.6 12 0.00042 31.7 15.1 118 197-339 102-220 (268)
80 3hrp_A Uncharacterized protein 87.1 17 0.00058 32.8 23.2 208 98-337 136-362 (409)
81 3v9f_A Two-component system se 87.0 25 0.00086 34.7 22.0 182 114-335 427-617 (781)
82 1gxr_A ESG1, transducin-like e 86.6 14 0.00047 31.3 20.9 194 100-335 105-302 (337)
83 1nir_A Nitrite reductase; hemo 86.2 23 0.00077 33.4 18.4 206 103-333 236-462 (543)
84 3scy_A Hypothetical bacterial 86.1 16 0.00056 31.7 24.3 114 200-335 221-345 (361)
85 4a0p_A LRP6, LRP-6, low-densit 86.1 25 0.00087 33.9 23.9 122 112-254 13-141 (628)
86 3mkq_A Coatomer beta'-subunit; 85.5 29 0.00099 34.0 24.9 196 99-335 62-265 (814)
87 3no2_A Uncharacterized protein 85.1 16 0.00056 30.8 16.4 191 102-336 3-202 (276)
88 3vgz_A Uncharacterized protein 84.9 18 0.00061 31.0 22.1 196 113-338 68-271 (353)
89 1got_B GT-beta; complex (GTP-b 84.8 19 0.00063 31.2 23.3 194 101-334 64-262 (340)
90 1p22_A F-BOX/WD-repeat protein 84.6 22 0.00076 31.9 19.2 185 103-331 182-367 (435)
91 1qks_A Cytochrome CD1 nitrite 84.5 28 0.00097 33.1 23.8 197 103-338 166-382 (567)
92 2hqs_A Protein TOLB; TOLB, PAL 84.4 23 0.00078 31.9 19.7 183 114-335 159-350 (415)
93 3fvz_A Peptidyl-glycine alpha- 84.2 20 0.00067 31.0 14.9 120 200-335 101-233 (329)
94 1n7d_A LDL receptor, low-densi 84.0 2.9 0.0001 41.1 8.3 49 199-254 463-514 (699)
95 3hrp_A Uncharacterized protein 83.9 9.3 0.00032 34.6 11.2 112 199-335 140-255 (409)
96 1ri6_A Putative isomerase YBHE 83.6 20 0.00067 30.5 23.1 195 114-335 60-270 (343)
97 1q7f_A NHL, brain tumor CG1071 83.2 19 0.00064 30.0 22.5 190 101-329 86-280 (286)
98 4g56_B MGC81050 protein; prote 83.1 23 0.00079 31.0 18.5 197 101-335 103-307 (357)
99 1npe_A Nidogen, entactin; glyc 82.8 19 0.00066 29.8 22.8 197 98-335 42-244 (267)
100 3e5z_A Putative gluconolactona 82.6 20 0.00068 30.1 12.4 111 200-335 38-167 (296)
101 4a2l_A BT_4663, two-component 82.0 42 0.0014 33.1 21.4 194 102-335 415-620 (795)
102 2aq5_A Coronin-1A; WD40 repeat 81.6 27 0.00094 30.8 20.1 202 101-335 140-348 (402)
103 4a11_B DNA excision repair pro 81.3 27 0.00091 30.5 19.1 199 103-333 55-280 (408)
104 2pm9_A Protein WEB1, protein t 81.2 28 0.00095 30.6 16.9 197 104-331 126-339 (416)
105 3bws_A Protein LP49; two-domai 81.1 29 0.001 30.8 20.6 180 112-329 232-432 (433)
106 1n7d_A LDL receptor, low-densi 80.6 12 0.0004 36.7 11.1 199 98-335 412-620 (699)
107 2aq5_A Coronin-1A; WD40 repeat 80.3 30 0.001 30.5 23.2 204 103-335 93-307 (402)
108 2mad_H Methylamine dehydrogena 80.2 31 0.0011 30.6 13.7 57 266-335 298-356 (373)
109 3s94_A LRP-6, low-density lipo 80.2 43 0.0015 32.2 19.1 190 105-335 11-208 (619)
110 3azo_A Aminopeptidase; POP fam 80.0 42 0.0014 32.0 19.4 186 114-335 161-375 (662)
111 3sfz_A APAF-1, apoptotic pepti 80.0 29 0.001 36.1 14.7 198 101-334 1012-1212(1249)
112 1pjx_A Dfpase, DIISOPROPYLFLUO 79.7 26 0.0009 29.4 22.6 196 112-332 44-259 (314)
113 4gqb_B Methylosome protein 50; 79.7 30 0.001 30.1 19.4 191 101-332 136-334 (344)
114 4g56_B MGC81050 protein; prote 79.5 31 0.0011 30.1 19.1 193 100-330 147-344 (357)
115 3v9f_A Two-component system se 79.5 50 0.0017 32.5 23.3 197 103-335 323-530 (781)
116 2ovr_B FBW7, F-BOX/WD repeat p 79.2 35 0.0012 30.6 23.5 114 196-330 324-443 (445)
117 1r5m_A SIR4-interacting protei 79.1 32 0.0011 30.1 18.2 143 101-273 215-361 (425)
118 4a11_B DNA excision repair pro 79.0 32 0.0011 30.0 17.9 67 103-174 111-177 (408)
119 3sov_A LRP-6, low-density lipo 78.2 33 0.0011 29.7 20.0 160 141-335 37-203 (318)
120 2ad6_A Methanol dehydrogenase 77.8 31 0.0011 32.8 12.9 118 194-335 56-191 (571)
121 1kb0_A Quinohemoprotein alcoho 77.7 18 0.00063 35.2 11.5 119 194-335 71-205 (677)
122 1k8k_C P40, ARP2/3 complex 41 77.6 34 0.0011 29.4 21.9 196 103-335 63-282 (372)
123 1yiq_A Quinohemoprotein alcoho 77.2 25 0.00085 34.3 12.3 119 194-335 64-198 (689)
124 2hqs_A Protein TOLB; TOLB, PAL 77.1 41 0.0014 30.1 23.3 183 114-335 203-393 (415)
125 2p4o_A Hypothetical protein; p 76.2 35 0.0012 29.0 22.6 195 102-334 41-246 (306)
126 1kv9_A Type II quinohemoprotei 76.1 24 0.00082 34.3 11.8 120 194-337 60-195 (668)
127 4hw6_A Hypothetical protein, I 75.9 30 0.001 31.5 11.8 116 194-332 141-262 (433)
128 2bkl_A Prolyl endopeptidase; m 75.8 59 0.002 31.4 21.8 189 115-335 203-403 (695)
129 3m0c_C LDL receptor, low-densi 75.5 68 0.0023 31.9 23.6 157 141-332 473-635 (791)
130 3iz6_a 40S ribosomal protein R 75.0 43 0.0015 29.4 20.3 152 160-334 177-334 (380)
131 3k26_A Polycomb protein EED; W 74.7 39 0.0013 28.8 18.7 66 104-175 85-150 (366)
132 3g4e_A Regucalcin; six bladed 74.4 38 0.0013 28.5 15.3 47 200-254 24-71 (297)
133 2p4o_A Hypothetical protein; p 74.2 40 0.0014 28.6 15.4 107 200-331 42-149 (306)
134 3tc9_A Hypothetical hydrolase; 73.1 54 0.0019 29.7 14.1 113 200-335 149-263 (430)
135 4a2l_A BT_4663, two-component 73.0 75 0.0026 31.3 23.0 205 99-335 221-442 (795)
136 3no2_A Uncharacterized protein 73.0 41 0.0014 28.2 16.4 148 160-338 12-163 (276)
137 3odt_A Protein DOA1; ubiquitin 72.9 40 0.0014 28.0 22.4 96 217-335 205-302 (313)
138 3ow8_A WD repeat-containing pr 72.3 46 0.0016 28.5 23.6 193 101-335 89-285 (321)
139 4ery_A WD repeat-containing pr 72.2 43 0.0015 28.1 23.7 184 111-335 42-229 (312)
140 3jro_A Fusion protein of prote 72.0 78 0.0027 31.0 14.6 96 217-330 31-133 (753)
141 3dr2_A Exported gluconolactona 71.6 36 0.0012 28.8 10.8 111 200-335 55-184 (305)
142 3i2n_A WD repeat-containing pr 71.6 46 0.0016 28.2 20.3 196 103-330 128-354 (357)
143 3k26_A Polycomb protein EED; W 71.5 47 0.0016 28.3 19.8 202 103-329 127-366 (366)
144 1r5m_A SIR4-interacting protei 71.5 51 0.0018 28.7 24.7 199 100-335 116-325 (425)
145 3dr2_A Exported gluconolactona 71.3 46 0.0016 28.1 18.3 203 106-339 59-276 (305)
146 3vl1_A 26S proteasome regulato 70.6 55 0.0019 28.7 20.6 100 217-329 313-419 (420)
147 3s94_A LRP-6, low-density lipo 70.2 78 0.0027 30.3 22.4 160 141-335 351-516 (619)
148 3mkq_A Coatomer beta'-subunit; 69.5 86 0.0029 30.5 22.4 183 112-335 33-223 (814)
149 2vdu_B TRNA (guanine-N(7)-)-me 69.0 65 0.0022 28.9 25.5 200 103-333 160-397 (450)
150 3vl1_A 26S proteasome regulato 68.5 61 0.0021 28.4 23.5 191 100-331 105-324 (420)
151 3fvz_A Peptidyl-glycine alpha- 67.9 57 0.002 27.9 25.1 210 101-329 99-322 (329)
152 3c75_H MADH, methylamine dehyd 66.6 77 0.0026 28.8 13.1 76 247-335 330-408 (426)
153 2ghs_A AGR_C_1268P; regucalcin 66.4 62 0.0021 27.7 22.5 204 100-339 57-269 (326)
154 2ojh_A Uncharacterized protein 66.4 52 0.0018 26.8 17.7 199 100-336 49-265 (297)
155 3v7d_B Cell division control p 65.9 74 0.0025 28.4 24.9 199 101-334 171-386 (464)
156 3fm0_A Protein CIAO1; WDR39,SG 65.9 64 0.0022 27.7 21.3 191 103-327 27-223 (345)
157 3bg1_A Protein SEC13 homolog; 65.8 61 0.0021 27.4 18.9 203 104-338 71-303 (316)
158 3v65_B Low-density lipoprotein 65.3 74 0.0025 28.2 23.0 195 100-335 124-325 (386)
159 3fm0_A Protein CIAO1; WDR39,SG 64.4 69 0.0024 27.5 21.2 164 141-335 19-187 (345)
160 3qqz_A Putative uncharacterize 64.3 63 0.0021 27.0 20.6 171 141-339 29-213 (255)
161 3dwl_C Actin-related protein 2 63.9 71 0.0024 27.5 16.5 203 100-335 63-287 (377)
162 2pm9_A Protein WEB1, protein t 63.4 75 0.0026 27.7 20.8 203 100-335 75-300 (416)
163 3scy_A Hypothetical bacterial 63.2 73 0.0025 27.4 24.4 116 200-335 165-299 (361)
164 1jmx_B Amine dehydrogenase; ox 62.8 69 0.0024 27.0 11.8 113 199-331 9-136 (349)
165 2ghs_A AGR_C_1268P; regucalcin 62.7 73 0.0025 27.2 15.6 108 200-335 60-174 (326)
166 2ojh_A Uncharacterized protein 62.7 61 0.0021 26.3 21.5 188 112-335 20-212 (297)
167 3gre_A Serine/threonine-protei 62.1 84 0.0029 27.8 19.6 113 201-335 182-298 (437)
168 1npe_A Nidogen, entactin; glyc 60.9 68 0.0023 26.3 20.2 161 141-335 38-204 (267)
169 2ynn_A Coatomer subunit beta'; 60.9 74 0.0025 26.7 24.4 199 100-338 63-268 (304)
170 2fp8_A Strictosidine synthase; 60.7 77 0.0026 26.9 13.8 113 200-335 29-180 (322)
171 3p5b_L Low density lipoprotein 60.6 93 0.0032 27.8 23.4 196 101-335 121-327 (400)
172 2hz6_A Endoplasmic reticulum t 60.2 2.3 7.9E-05 38.0 0.7 30 195-231 4-35 (369)
173 1jmx_B Amine dehydrogenase; ox 58.1 84 0.0029 26.5 19.4 69 102-176 9-78 (349)
174 1erj_A Transcriptional repress 57.3 99 0.0034 27.1 22.6 199 101-335 132-347 (393)
175 1flg_A Protein (quinoprotein e 57.3 94 0.0032 29.5 11.5 122 194-335 62-199 (582)
176 3ow8_A WD repeat-containing pr 56.5 92 0.0032 26.4 23.8 186 111-335 55-243 (321)
177 4gga_A P55CDC, cell division c 56.4 1.1E+02 0.0036 27.1 12.9 88 229-335 94-184 (420)
178 2pm7_B Protein transport prote 55.6 90 0.0031 26.0 22.1 197 102-330 19-239 (297)
179 2xzm_R RACK1; ribosome, transl 55.5 70 0.0024 27.4 9.7 74 247-334 38-112 (343)
180 4ery_A WD repeat-containing pr 55.4 90 0.0031 26.0 23.6 197 101-335 74-274 (312)
181 1ddw_A GLGF-domain protein hom 55.4 23 0.00079 25.9 5.3 40 114-159 11-51 (120)
182 1w6s_A Methanol dehydrogenase 55.1 1.1E+02 0.0037 29.2 11.5 118 194-335 56-197 (599)
183 1ijq_A LDL receptor, low-densi 55.0 99 0.0034 26.3 24.0 198 98-335 36-245 (316)
184 3f3f_A Nucleoporin SEH1; struc 54.7 92 0.0031 25.9 24.3 155 103-273 70-249 (351)
185 1vyh_C Platelet-activating fac 54.2 1.2E+02 0.004 26.9 23.9 145 101-273 117-265 (410)
186 3lrv_A PRE-mRNA-splicing facto 53.7 1E+02 0.0036 26.2 12.9 97 218-333 105-205 (343)
187 2fp8_A Strictosidine synthase; 53.6 1E+02 0.0035 26.1 19.8 201 111-339 37-278 (322)
188 4e54_B DNA damage-binding prot 53.6 1.2E+02 0.0041 26.9 18.1 156 141-331 122-284 (435)
189 1erj_A Transcriptional repress 53.3 1.2E+02 0.004 26.6 19.9 155 142-330 127-288 (393)
190 1pby_B Quinohemoprotein amine 53.0 99 0.0034 25.7 18.5 194 98-334 87-315 (337)
191 3lrv_A PRE-mRNA-splicing facto 52.5 1.1E+02 0.0037 26.1 20.3 202 97-334 88-299 (343)
192 3zwl_B Eukaryotic translation 52.0 1.1E+02 0.0037 25.9 22.9 201 101-335 41-255 (369)
193 2vdu_B TRNA (guanine-N(7)-)-me 51.4 1.3E+02 0.0046 26.7 23.3 99 217-335 171-277 (450)
194 1got_B GT-beta; complex (GTP-b 51.1 1.1E+02 0.0039 25.9 21.6 142 161-335 162-307 (340)
195 3v64_C Agrin; beta propeller, 50.8 1.2E+02 0.0042 26.2 25.3 195 100-335 81-282 (349)
196 1evh_A WH1 domain, protein (ME 50.8 38 0.0013 24.4 5.8 42 114-159 11-52 (112)
197 1pgu_A Actin interacting prote 50.6 1.5E+02 0.0053 27.3 20.7 135 162-330 466-615 (615)
198 4aez_A CDC20, WD repeat-contai 50.6 1.3E+02 0.0044 26.3 21.8 192 103-335 145-342 (401)
199 3bg1_A Protein SEC13 homolog; 49.9 1.2E+02 0.004 25.6 17.8 74 102-179 23-97 (316)
200 1sq9_A Antiviral protein SKI8; 49.4 1.3E+02 0.0043 25.9 22.8 63 262-335 205-273 (397)
201 3dm0_A Maltose-binding peripla 49.4 1.8E+02 0.0062 27.8 23.5 196 99-335 437-638 (694)
202 1i2h_A PSD-ZIP45(homer-1C/VESL 49.2 51 0.0018 25.6 6.6 40 114-159 16-56 (168)
203 1fwx_A Nitrous oxide reductase 49.2 67 0.0023 30.7 8.7 128 198-339 285-441 (595)
204 4hw6_A Hypothetical protein, I 48.7 1.5E+02 0.0053 26.7 19.6 204 103-336 152-380 (433)
205 2ece_A 462AA long hypothetical 47.8 1.7E+02 0.0058 26.9 11.4 106 216-328 227-351 (462)
206 1sq9_A Antiviral protein SKI8; 47.5 1.4E+02 0.0047 25.7 20.9 202 103-331 136-397 (397)
207 2pm7_B Protein transport prote 47.4 1.2E+02 0.0042 25.1 21.4 207 104-335 67-292 (297)
208 3ei3_B DNA damage-binding prot 46.5 1.4E+02 0.0048 25.6 19.1 154 141-329 76-236 (383)
209 3pe7_A Oligogalacturonate lyas 46.5 1.4E+02 0.0048 25.6 13.9 108 114-235 168-283 (388)
210 4ggc_A P55CDC, cell division c 45.8 1.3E+02 0.0043 24.8 16.7 155 101-273 159-315 (318)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 45.5 1.3E+02 0.0044 24.9 21.0 192 100-331 78-301 (314)
212 1vyh_C Platelet-activating fac 45.0 1.6E+02 0.0055 25.9 22.7 190 101-332 159-372 (410)
213 4ggc_A P55CDC, cell division c 44.9 1.3E+02 0.0044 24.8 23.2 146 101-273 34-181 (318)
214 1yr2_A Prolyl oligopeptidase; 43.7 2.3E+02 0.008 27.4 21.5 163 142-335 271-447 (741)
215 3ott_A Two-component system se 42.6 2.5E+02 0.0084 27.3 14.2 100 205-335 77-180 (758)
216 3dm0_A Maltose-binding peripla 42.2 2.3E+02 0.008 27.0 20.5 184 112-328 492-692 (694)
217 2pbi_B Guanine nucleotide-bind 41.6 1.7E+02 0.0057 25.1 20.0 177 111-326 173-354 (354)
218 3c5m_A Oligogalacturonate lyas 41.5 1.7E+02 0.0057 25.1 14.7 125 113-254 167-300 (396)
219 3mmy_A MRNA export factor; mRN 41.5 1.6E+02 0.0054 24.7 12.6 70 248-335 54-123 (368)
220 2oiz_A Aromatic amine dehydrog 40.6 1.8E+02 0.0062 25.2 12.4 55 266-335 286-340 (361)
221 1mda_H Methylamine dehydrogena 40.1 1.9E+02 0.0067 25.4 10.6 49 278-335 302-352 (368)
222 2kwv_A RAD30 homolog B, DNA po 39.9 13 0.00046 21.8 1.5 17 2-19 22-38 (48)
223 3tc9_A Hypothetical hydrolase; 39.6 2.1E+02 0.0072 25.7 21.4 206 102-337 148-378 (430)
224 3iz6_a 40S ribosomal protein R 38.6 1.9E+02 0.0066 25.0 21.9 187 111-330 177-376 (380)
225 2qe8_A Uncharacterized protein 38.4 1.7E+02 0.0058 25.0 9.4 122 200-335 27-160 (343)
226 2hes_X YDR267CP; beta-propelle 38.0 1.8E+02 0.0063 24.5 19.6 196 101-329 116-328 (330)
227 3mmy_A MRNA export factor; mRN 37.3 1.8E+02 0.0063 24.3 21.6 201 102-335 96-310 (368)
228 3azo_A Aminopeptidase; POP fam 36.7 2.7E+02 0.0093 26.1 22.3 215 103-335 90-331 (662)
229 1egx_A VAsp, vasodilator-stimu 36.1 50 0.0017 23.9 4.4 42 115-159 12-53 (115)
230 3zwl_B Eukaryotic translation 35.8 1.9E+02 0.0066 24.2 23.6 152 103-273 85-249 (369)
231 3odt_A Protein DOA1; ubiquitin 33.5 1.9E+02 0.0066 23.5 23.5 189 103-335 29-220 (313)
232 1jof_A Carboxy-CIS,CIS-muconat 32.6 2.4E+02 0.0081 24.2 15.9 145 165-335 18-183 (365)
233 2pbi_B Guanine nucleotide-bind 32.4 2.4E+02 0.0081 24.1 21.5 198 102-335 74-277 (354)
234 3qqz_A Putative uncharacterize 32.3 2.2E+02 0.0074 23.7 16.0 109 200-326 38-150 (255)
235 3amr_A 3-phytase; beta-propell 32.3 2.6E+02 0.009 24.6 20.4 195 111-332 47-267 (355)
236 3syx_A Sprouty-related, EVH1 d 30.9 1.6E+02 0.0055 21.7 6.7 40 114-159 18-63 (130)
237 3i2n_A WD repeat-containing pr 30.8 2.3E+02 0.008 23.6 22.1 110 199-330 178-292 (357)
238 3amr_A 3-phytase; beta-propell 30.6 2.8E+02 0.0096 24.4 19.1 149 113-287 98-272 (355)
239 4aow_A Guanine nucleotide-bind 30.5 2.3E+02 0.0079 23.4 20.9 96 217-334 195-291 (340)
240 1qks_A Cytochrome CD1 nitrite 29.7 3.6E+02 0.012 25.3 21.5 176 141-335 344-544 (567)
241 3dw8_B Serine/threonine-protei 28.2 2.5E+02 0.0086 24.4 9.0 71 247-331 188-260 (447)
242 3s3x_D Psalmotoxin-1; acid-sen 27.9 23 0.00079 18.7 1.0 22 100-123 15-36 (37)
243 3sfz_A APAF-1, apoptotic pepti 27.8 5.1E+02 0.018 26.6 26.9 71 98-175 621-691 (1249)
244 2be1_A Serine/threonine-protei 27.7 1.4E+02 0.0048 26.1 6.8 57 161-229 65-133 (339)
245 3vu4_A KMHSV2; beta-propeller 26.7 3E+02 0.01 23.5 20.1 67 247-331 206-273 (355)
246 3sov_A LRP-6, low-density lipo 26.3 3E+02 0.01 23.4 22.7 192 103-335 46-245 (318)
247 2xyi_A Probable histone-bindin 26.2 3.3E+02 0.011 23.9 18.6 194 111-333 201-414 (430)
248 3ei3_A DNA damage-binding prot 25.8 5.8E+02 0.02 26.5 14.4 99 216-336 863-964 (1158)
249 2lyd_A Decapping protein 1; DC 24.4 83 0.0028 23.4 4.0 27 311-339 30-56 (134)
250 1kb0_A Quinohemoprotein alcoho 24.1 4.8E+02 0.016 25.0 20.0 121 102-232 76-207 (677)
251 1yiq_A Quinohemoprotein alcoho 24.0 4.9E+02 0.017 25.0 17.5 85 163-254 80-174 (689)
252 2xyi_A Probable histone-bindin 23.4 3.8E+02 0.013 23.5 19.1 156 142-329 185-353 (430)
253 3frx_A Guanine nucleotide-bind 23.4 3.2E+02 0.011 22.7 18.9 204 98-331 113-319 (319)
254 3gre_A Serine/threonine-protei 23.0 3.7E+02 0.013 23.3 9.8 71 247-335 181-251 (437)
255 2z3z_A Dipeptidyl aminopeptida 22.7 4.9E+02 0.017 24.6 20.3 206 98-335 87-350 (706)
256 2be1_A Serine/threonine-protei 22.4 2.8E+02 0.0097 24.1 7.7 30 309-339 111-140 (339)
257 1xod_A Spred1; sprouty, EVH1, 21.8 1E+02 0.0035 22.3 4.0 40 115-159 12-56 (118)
258 2xzm_R RACK1; ribosome, transl 21.7 3.6E+02 0.012 22.6 18.8 30 298-330 312-341 (343)
259 1nr0_A Actin interacting prote 20.6 5.2E+02 0.018 24.0 20.5 202 98-334 65-275 (611)
260 3iuj_A Prolyl endopeptidase; h 20.5 5.6E+02 0.019 24.4 21.4 163 142-335 237-411 (693)
261 2ymu_A WD-40 repeat protein; u 20.5 4.8E+02 0.016 23.6 24.0 179 112-335 323-504 (577)
262 2w18_A PALB2, fancn, partner a 20.2 4.2E+02 0.014 23.3 8.3 35 247-290 52-86 (356)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.57 E-value=6.7e-13 Score=118.42 Aligned_cols=212 Identities=9% Similarity=0.011 Sum_probs=138.5
Q ss_pred EEEeecceEEEEEe-----CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEEEE
Q 040165 98 IIGSCNGLVCMALH-----GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKVFS 169 (358)
Q Consensus 98 ~~~s~~Gll~~~~~-----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~vys 169 (358)
.++..+|.|.+... ....+.++||.|++|..+++++.++...... .+ .+...|+... .....+++|+
T Consensus 56 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~~iyv~GG~~~~~~~~~~~~~d 130 (302)
T 2xn4_A 56 GMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA--VL---NGLLYAVGGFDGSTGLSSVEAYN 130 (302)
T ss_dssp EEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EE---TTEEEEEEEECSSCEEEEEEEEE
T ss_pred eEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE--EE---CCEEEEEcCCCCCccCceEEEEe
Confidence 44555777766522 1256899999999999999887654322121 11 2222222222 2246799999
Q ss_pred cCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCC-CCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEEC
Q 040165 170 MKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFG-SQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVG 247 (358)
Q Consensus 170 s~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~ 247 (358)
+.+++|+.++. +|... ....++.++|.+|.+++..... .....+..||+.+++|+.+ ++|..+....++..+
T Consensus 131 ~~~~~W~~~~~-----~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 204 (302)
T 2xn4_A 131 IKSNEWFHVAP-----MNTRR-SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLN 204 (302)
T ss_dssp TTTTEEEEECC-----CSSCC-BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred CCCCeEeecCC-----CCCcc-cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEEC
Confidence 99999999987 66543 4467788999999998764321 1135799999999999998 555444455677889
Q ss_pred CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-----ceE
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW-----REF 322 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~l 322 (358)
|+|+++++..+.. ... ++|.++.. ...|+++..++.... ...+++ .++.|++..... ..+
T Consensus 205 ~~iyv~GG~~~~~-~~~--~~~~yd~~--~~~W~~~~~~~~~r~------~~~~~~----~~~~i~v~GG~~~~~~~~~v 269 (302)
T 2xn4_A 205 NLLYAVGGHDGPL-VRK--SVEVYDPT--TNAWRQVADMNMCRR------NAGVCA----VNGLLYVVGGDDGSCNLASV 269 (302)
T ss_dssp TEEEEECCBSSSS-BCC--CEEEEETT--TTEEEEECCCSSCCB------SCEEEE----ETTEEEEECCBCSSSBCCCE
T ss_pred CEEEEECCCCCCc-ccc--eEEEEeCC--CCCEeeCCCCCCccc------cCeEEE----ECCEEEEECCcCCCcccccE
Confidence 9999999754311 123 45555542 268998875553321 222332 256677765421 259
Q ss_pred EEEECCCCeEEEe
Q 040165 323 ISCNLNERTLEEI 335 (358)
Q Consensus 323 ~~yd~~t~~~~~v 335 (358)
..||+++++|+++
T Consensus 270 ~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 270 EYYNPTTDKWTVV 282 (302)
T ss_dssp EEEETTTTEEEEC
T ss_pred EEEcCCCCeEEEC
Confidence 9999999999998
No 2
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.56 E-value=3.5e-13 Score=120.54 Aligned_cols=214 Identities=10% Similarity=0.008 Sum_probs=140.5
Q ss_pred EEEeecceEEEEEe----CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE------ccceEEEE
Q 040165 98 IIGSCNGLVCMALH----GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS------CLRVLLKV 167 (358)
Q Consensus 98 ~~~s~~Gll~~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~------~~~~~~~v 167 (358)
..+..+|.|.+... ....+.++||.|++|..+++++.+....... .+ .+ +++.+. .....+++
T Consensus 50 ~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~--~iyv~GG~~~~~~~~~~~~~ 122 (306)
T 3ii7_A 50 ACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AA---EG--KIYTSGGSEVGNSALYLFEC 122 (306)
T ss_dssp EEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EE---TT--EEEEECCBBTTBSCCCCEEE
T ss_pred EEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EE---CC--EEEEECCCCCCCcEeeeEEE
Confidence 44556777766522 2367899999999999999887553322121 11 12 233332 12467999
Q ss_pred EEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCC---CcEEEEEECCCCeeEEe-cCCCCCCceEE
Q 040165 168 FSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQ---DPVIIAFDLAEEKFCRV-GEACHPRSVSL 243 (358)
Q Consensus 168 yss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~---~~~i~~fD~~~~~~~~i-~~P~~~~~~~l 243 (358)
|++.+++|+.++. +|... ..+.++.++|++|.+++....... ...+..||+.+++|+.+ ++|.......+
T Consensus 123 ~d~~~~~W~~~~~-----~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 196 (306)
T 3ii7_A 123 YDTRTESWHTKPS-----MLTQR-CSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGL 196 (306)
T ss_dssp EETTTTEEEEECC-----CSSCC-BSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred EeCCCCceEeCCC-----CcCCc-ceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceE
Confidence 9999999999977 66543 456778899999999976433211 35799999999999998 45544445667
Q ss_pred EEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----
Q 040165 244 GVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK----- 318 (358)
Q Consensus 244 ~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~----- 318 (358)
+..+|+|+++++.... .... .+|.++.. ..+|+.+..++.... ....++ .++.|++....
T Consensus 197 ~~~~~~i~v~GG~~~~-~~~~--~~~~yd~~--~~~W~~~~~~p~~r~------~~~~~~----~~~~i~v~GG~~~~~~ 261 (306)
T 3ii7_A 197 VFVKDKIFAVGGQNGL-GGLD--NVEYYDIK--LNEWKMVSPMPWKGV------TVKCAA----VGSIVYVLAGFQGVGR 261 (306)
T ss_dssp EEETTEEEEECCEETT-EEBC--CEEEEETT--TTEEEECCCCSCCBS------CCEEEE----ETTEEEEEECBCSSSB
T ss_pred EEECCEEEEEeCCCCC-CCCc--eEEEeeCC--CCcEEECCCCCCCcc------ceeEEE----ECCEEEEEeCcCCCee
Confidence 7789999999875421 1123 34555542 268998865543221 222333 25668877652
Q ss_pred cceEEEEECCCCeEEEeeccc
Q 040165 319 WREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 319 ~~~l~~yd~~t~~~~~v~~~~ 339 (358)
...+..||+++++|+++-.++
T Consensus 262 ~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 262 LGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp CCEEEEEETTTTEEEEEEEEE
T ss_pred eeeEEEEcCCCCeEEeCCCcc
Confidence 125999999999999984333
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.56 E-value=6.9e-13 Score=118.81 Aligned_cols=213 Identities=9% Similarity=0.006 Sum_probs=139.0
Q ss_pred EEEeecceEEEEEeC---------CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-----ccce
Q 040165 98 IIGSCNGLVCMALHG---------CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-----CLRV 163 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~---------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-----~~~~ 163 (358)
.++..+|.|.+.... ...+.++||.|++|..+++++.++...... .+ .+ +++.+. ....
T Consensus 65 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~--~iyv~GG~~~~~~~~ 137 (308)
T 1zgk_A 65 AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG--VI---DG--HIYAVGGSHGCIHHN 137 (308)
T ss_dssp EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE--EE---TT--EEEEECCEETTEECC
T ss_pred eEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE--EE---CC--EEEEEcCCCCCcccc
Confidence 445557776655211 246899999999999999887653322121 11 12 233332 2246
Q ss_pred EEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceE
Q 040165 164 LLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVS 242 (358)
Q Consensus 164 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~ 242 (358)
.+++|++.+++|+.++. +|... ....++.++|.||.+++...... ...+..||+.+++|+.+ ++|..+....
T Consensus 138 ~~~~yd~~~~~W~~~~~-----~p~~r-~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 210 (308)
T 1zgk_A 138 SVERYEPERDEWHLVAP-----MLTRR-IGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAMNTIRSGAG 210 (308)
T ss_dssp CEEEEETTTTEEEECCC-----CSSCC-BSCEEEEETTEEEEECCBCSSCB-CCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred cEEEECCCCCeEeECCC-----CCccc-cceEEEEECCEEEEEeCCCCCCc-CceEEEEeCCCCeEeeCCCCCCccccce
Confidence 79999999999999987 66543 44677888999999987653221 35799999999999998 4554444556
Q ss_pred EEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC----
Q 040165 243 LGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK---- 318 (358)
Q Consensus 243 l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---- 318 (358)
++..+++|+++++.... ...-++|.++.. ..+|+++..++.... ....++ .+++|++....
T Consensus 211 ~~~~~~~iyv~GG~~~~---~~~~~v~~yd~~--~~~W~~~~~~p~~r~------~~~~~~----~~~~i~v~GG~~~~~ 275 (308)
T 1zgk_A 211 VCVLHNCIYAAGGYDGQ---DQLNSVERYDVE--TETWTFVAPMKHRRS------ALGITV----HQGRIYVLGGYDGHT 275 (308)
T ss_dssp EEEETTEEEEECCBCSS---SBCCCEEEEETT--TTEEEECCCCSSCCB------SCEEEE----ETTEEEEECCBCSSC
T ss_pred EEEECCEEEEEeCCCCC---CccceEEEEeCC--CCcEEECCCCCCCcc------ceEEEE----ECCEEEEEcCcCCCc
Confidence 67789999999975421 112345555542 268998765543221 222222 25667776542
Q ss_pred -cceEEEEECCCCeEEEeeccc
Q 040165 319 -WREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 319 -~~~l~~yd~~t~~~~~v~~~~ 339 (358)
...+..||+++++|+++-.++
T Consensus 276 ~~~~v~~yd~~~~~W~~~~~~p 297 (308)
T 1zgk_A 276 FLDSVECYDPDTDTWSEVTRMT 297 (308)
T ss_dssp BCCEEEEEETTTTEEEEEEECS
T ss_pred ccceEEEEcCCCCEEeecCCCC
Confidence 125999999999999984443
No 4
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.55 E-value=5.9e-13 Score=119.79 Aligned_cols=194 Identities=11% Similarity=0.059 Sum_probs=129.3
Q ss_pred EEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-----ccceEEEEEEcCCCceEeccccccccccccc
Q 040165 116 FFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-----CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 116 ~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-----~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
++++||.|++|..+|+++.++...... .+ .+...|+... .....+++|++.+++|+.++. +|...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~~r 149 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLG--EV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-----LPIKV 149 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEE--EE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-----CSSCE
T ss_pred EEEEeCCCCcEEECCCCCccccccceE--EE---CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-----CCCcc
Confidence 789999999999999887654322111 11 2222222221 123679999999999999886 66543
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEE
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW 269 (358)
..+.++.++|+||.+++..........+..||+.+++|+.+ ++|..+....++..+|+|+++++.... ...-.+|
T Consensus 150 -~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~ 225 (318)
T 2woz_A 150 -YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTED---GLSASVE 225 (318)
T ss_dssp -ESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETT---EEEEEEE
T ss_pred -cccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCC---CccceEE
Confidence 44677789999999998643222235799999999999998 455444455677889999999975421 1234566
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC--------------cceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK--------------WREFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--------------~~~l~~yd~~t~~~~~v 335 (358)
.++.. ..+|+++..++.... ...+++ .++.|++.... ...++.||+++++|+++
T Consensus 226 ~yd~~--~~~W~~~~~~p~~r~------~~~~~~----~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 226 AFDLK--TNKWEVMTEFPQERS------SISLVS----LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEETT--TCCEEECCCCSSCCB------SCEEEE----ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEECC--CCeEEECCCCCCccc------ceEEEE----ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 66642 368999765544321 222222 25667776431 12599999999999998
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.55 E-value=4.5e-13 Score=120.36 Aligned_cols=195 Identities=9% Similarity=-0.008 Sum_probs=130.7
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE------ccceEEEEEEcCCCceEeccccccccccc
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS------CLRVLLKVFSMKAFSWRDVHYNLGVKLFY 188 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~------~~~~~~~vyss~t~~W~~~~~~~~~~~~~ 188 (358)
.++++||.|++|..+|++|.++...... .+ .+..-|+... .....+++|++.+++|+.++. +|.
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~-----~p~ 137 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCLFGLG--EA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP-----LPY 137 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEESCEEE--EE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC-----CSS
T ss_pred ceEEecCCCCeEEECCCCCcchhceeEE--EE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC-----CCC
Confidence 3789999999999999887553221111 11 2222222211 124679999999999999987 665
Q ss_pred ccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEE
Q 040165 189 GTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 189 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~ 267 (358)
.. ..+.++.++|++|.+++..........+..||+.+++|+.+ ++|..+.....+..+|+|+++++.... ...-.
T Consensus 138 ~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~ 213 (315)
T 4asc_A 138 VV-YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDT---GLTSS 213 (315)
T ss_dssp CC-BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSS---SEEEE
T ss_pred cc-cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCC---Cccce
Confidence 43 45777889999999998743333346899999999999998 455444456677889999999975421 22346
Q ss_pred EEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc--------------ceEEEEECCCCeEE
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW--------------REFISCNLNERTLE 333 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--------------~~l~~yd~~t~~~~ 333 (358)
+|.++.. ..+|+.+..++.... ...+++ .++.|++..... ..++.||+++++|+
T Consensus 214 ~~~yd~~--~~~W~~~~~~p~~r~------~~~~~~----~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 214 AEVYSIT--DNKWAPFEAFPQERS------SLSLVS----LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEETT--TTEEEEECCCSSCCB------SCEEEE----ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EEEEECC--CCeEEECCCCCCccc------ceeEEE----ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 6777652 368999865543321 222222 256677654321 24899999999999
Q ss_pred Ee
Q 040165 334 EI 335 (358)
Q Consensus 334 ~v 335 (358)
++
T Consensus 282 ~~ 283 (315)
T 4asc_A 282 GV 283 (315)
T ss_dssp EE
T ss_pred hh
Confidence 99
No 6
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.54 E-value=1.6e-12 Score=115.89 Aligned_cols=213 Identities=7% Similarity=-0.017 Sum_probs=139.4
Q ss_pred EEEeecceEEEEEe-----CCceEEEEcccccc---eeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-----ccceE
Q 040165 98 IIGSCNGLVCMALH-----GCKDFFIYNPSTRA---HKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-----CLRVL 164 (358)
Q Consensus 98 ~~~s~~Gll~~~~~-----~~~~~~V~NP~T~~---~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-----~~~~~ 164 (358)
..+..+|.+.+... ....++++||.|++ |..+++++.+....... .+ .+ +++.+. .....
T Consensus 57 ~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~--~~---~~--~lyv~GG~~~~~~~~~ 129 (301)
T 2vpj_A 57 ASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT--TL---GD--MIYVSGGFDGSRRHTS 129 (301)
T ss_dssp EEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE--EE---TT--EEEEECCBCSSCBCCE
T ss_pred cEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE--EE---CC--EEEEEcccCCCcccce
Confidence 45556776666522 13578999999999 99999887654322121 12 12 333332 22467
Q ss_pred EEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEE
Q 040165 165 LKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSL 243 (358)
Q Consensus 165 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l 243 (358)
+++|++.+++|+.++. +|... ..+.++.++|.+|.+++..... ....+..||+.+++|+.+ ++|.......+
T Consensus 130 ~~~~d~~~~~W~~~~~-----~p~~r-~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 202 (301)
T 2vpj_A 130 MERYDPNIDQWSMLGD-----MQTAR-EGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTPMATKRSGAGV 202 (301)
T ss_dssp EEEEETTTTEEEEEEE-----CSSCC-BSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred EEEEcCCCCeEEECCC-----CCCCc-ccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCCCCcccccceE
Confidence 9999999999999876 55443 4467778899999998754321 235799999999999998 45544445667
Q ss_pred EEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc----
Q 040165 244 GVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW---- 319 (358)
Q Consensus 244 ~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---- 319 (358)
+..+++|+++++..... .... +|.++. ...+|+++..++.... ....++ .+++|++.....
T Consensus 203 ~~~~~~i~v~GG~~~~~-~~~~--v~~yd~--~~~~W~~~~~~p~~r~------~~~~~~----~~~~i~v~GG~~~~~~ 267 (301)
T 2vpj_A 203 ALLNDHIYVVGGFDGTA-HLSS--VEAYNI--RTDSWTTVTSMTTPRC------YVGATV----LRGRLYAIAGYDGNSL 267 (301)
T ss_dssp EEETTEEEEECCBCSSS-BCCC--EEEEET--TTTEEEEECCCSSCCB------SCEEEE----ETTEEEEECCBCSSSB
T ss_pred EEECCEEEEEeCCCCCc-ccce--EEEEeC--CCCcEEECCCCCCccc------ceeEEE----ECCEEEEEcCcCCCcc
Confidence 78899999999754321 1334 455544 1268998865543321 222233 256677765421
Q ss_pred -ceEEEEECCCCeEEEeeccc
Q 040165 320 -REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 320 -~~l~~yd~~t~~~~~v~~~~ 339 (358)
..++.||+++++|+.+-.++
T Consensus 268 ~~~v~~yd~~~~~W~~~~~~~ 288 (301)
T 2vpj_A 268 LSSIECYDPIIDSWEVVTSMG 288 (301)
T ss_dssp EEEEEEEETTTTEEEEEEEEE
T ss_pred cccEEEEcCCCCeEEEcCCCC
Confidence 25999999999999984333
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=99.53 E-value=1.6e-12 Score=116.23 Aligned_cols=201 Identities=8% Similarity=-0.039 Sum_probs=132.2
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE----ccceEEEEEEcCCCceEeccccccccccc
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS----CLRVLLKVFSMKAFSWRDVHYNLGVKLFY 188 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~----~~~~~~~vyss~t~~W~~~~~~~~~~~~~ 188 (358)
...+.++||.+++|..+++++.++.....+ .. .+ +++.+. .....+++|+..+++|+.++. +|.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~--~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-----~p~ 90 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FW---DN--VVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-----PPT 90 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEE--EE---TT--EEEEECCBSSSBCCEEEEEETTTTEEEEEEC-----CSS
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEE--EE---CC--EEEEEeCCCCCCcceEEEEeCCCCeEEECCC-----CCc
Confidence 457899999999999999887653322111 11 12 232222 234789999999999999877 665
Q ss_pred ccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCC-CCcE
Q 040165 189 GTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDK-TTDF 266 (358)
Q Consensus 189 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~-~~~~ 266 (358)
.. ..+.++.++|.+|.+++..........+..||+.+++|+.+ ++|..+....++..+|+|+++++....... ...-
T Consensus 91 ~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 91 PR-DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CC-BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred cc-cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence 43 44677789999999998652222346799999999999998 555444455667789999999975432110 0023
Q ss_pred EEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEeecc
Q 040165 267 ELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 267 ~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v~~~ 338 (358)
.+|.++.. ..+|+++..++... ....+++ .++.|++.... ...+..||+++++|+++-.+
T Consensus 170 ~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~----~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 170 SCEVYDPA--TETWTELCPMIEAR------KNHGLVF----VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp CEEEEETT--TTEEEEECCCSSCC------BSCEEEE----ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred eEEEeCCC--CCeEEECCCccchh------hcceEEE----ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 44555542 26899886554322 1222333 25667776432 12599999999999999333
No 8
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=99.49 E-value=4.6e-12 Score=113.77 Aligned_cols=202 Identities=7% Similarity=-0.069 Sum_probs=128.3
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---------ccceEEEEEEcCCCceEecccccc
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---------CLRVLLKVFSMKAFSWRDVHYNLG 183 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---------~~~~~~~vyss~t~~W~~~~~~~~ 183 (358)
...+.++||.|++|.. ++++.+..+. ..... ...+..-|+... .....+++|++.+++|+.++.
T Consensus 12 G~~~~~yd~~~~~W~~-~~~~~p~~r~-~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--- 84 (315)
T 4asc_A 12 EEGAVAYDPAANECYC-ASLSSQVPKN-HVSLV--TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP--- 84 (315)
T ss_dssp TTEEEEEETTTTEEEE-EECCCCSCSS-EEEEE--CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC---
T ss_pred CCceEEECCCCCeEec-CCCCCCCCcc-ceEEE--EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC---
Confidence 3678999999999986 4443221221 11111 123333333331 112348999999999999887
Q ss_pred cccccccCCCCceEEECceEEEEeecCC--CCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeeccccc
Q 040165 184 VKLFYGTESPPKGCLFNGALHWLVSGFH--FGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCV 260 (358)
Q Consensus 184 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~ 260 (358)
+|... ..+..+.++|.+|.+++... .......+..||+.+++|+.+ ++|..+.....+..+|+|+++++.....
T Consensus 85 --~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 --LPSPR-CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp --BSSCE-ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred --CCcch-hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 66543 44777889999999998531 122245799999999999998 5564444556777999999999763211
Q ss_pred CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-----ceEEEEECCCCeEEEe
Q 040165 261 DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW-----REFISCNLNERTLEEI 335 (358)
Q Consensus 261 ~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~l~~yd~~t~~~~~v 335 (358)
...-.+|.++.. ..+|+++..++... .....++ .++.|++..... ..+..||+++++|+++
T Consensus 162 --~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 162 --KCLNKMCVYDPK--KFEWKELAPMQTAR------SLFGATV----HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp --CBCCCEEEEETT--TTEEEECCCCSSCC------BSCEEEE----ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred --cccceEEEEeCC--CCeEEECCCCCCch------hceEEEE----ECCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 122345555542 26899876554322 1222222 256677765321 2599999999999999
Q ss_pred ecc
Q 040165 336 YRP 338 (358)
Q Consensus 336 ~~~ 338 (358)
-.+
T Consensus 228 ~~~ 230 (315)
T 4asc_A 228 EAF 230 (315)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 9
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=99.44 E-value=1e-11 Score=110.54 Aligned_cols=196 Identities=9% Similarity=0.025 Sum_probs=129.5
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-----ccceEEEEEEcCCCc---eEecccccccc
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-----CLRVLLKVFSMKAFS---WRDVHYNLGVK 185 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-----~~~~~~~vyss~t~~---W~~~~~~~~~~ 185 (358)
..++++||.|++|..++.++.+.... .. ... .+ +++.+. .....+++|+..+++ |+.++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~---~~--~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~----- 98 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYV-AS-VSL---HD--RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP----- 98 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EE-EEE---TT--EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC-----
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccc-cE-EEE---CC--EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC-----
Confidence 46889999999999999877543221 11 111 12 233332 224579999999999 999977
Q ss_pred cccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCC
Q 040165 186 LFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTT 264 (358)
Q Consensus 186 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~ 264 (358)
+|... ....++.++|.+|.+++..... ....+..||+.+++|+.+ ++|..+.....+..+|+|+++++..... ...
T Consensus 99 ~p~~r-~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~ 175 (301)
T 2vpj_A 99 MNVRR-GLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN-ILN 175 (301)
T ss_dssp CSSCC-BSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSC-BCC
T ss_pred CCCCc-cceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCc-ccc
Confidence 66543 4567788899999998765321 135899999999999998 5554444556677899999999754211 123
Q ss_pred cEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEeecc
Q 040165 265 DFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 265 ~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v~~~ 338 (358)
. +|.++.. ...|+++..++... .....++ .++.|++.... ...++.||+++++|+++-.+
T Consensus 176 ~--~~~~d~~--~~~W~~~~~~p~~r------~~~~~~~----~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 176 S--VEKYDPH--TGHWTNVTPMATKR------SGAGVAL----LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp C--EEEEETT--TTEEEEECCCSSCC------BSCEEEE----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred e--EEEEeCC--CCcEEeCCCCCccc------ccceEEE----ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 3 4555542 26899886554322 1222222 25667776542 12599999999999999333
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=99.43 E-value=1.1e-11 Score=110.58 Aligned_cols=196 Identities=11% Similarity=0.051 Sum_probs=128.8
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-----ccceEEEEEEcCCCceEeccccccccccc
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-----CLRVLLKVFSMKAFSWRDVHYNLGVKLFY 188 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-----~~~~~~~vyss~t~~W~~~~~~~~~~~~~ 188 (358)
..+.++||.+++|..++++|.+......+ .. .+ +++.+. .....+++|+..+++|+.++. +|.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-----~p~ 97 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMV--YM---AG--LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN-----MRD 97 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEE--EE---TT--EEEEESCBCSSSBCCCEEEEETTTTEEEEECC-----CSS
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEE--EE---CC--EEEEEeCcCCCccccceEEECCCCCceeeCCC-----CCc
Confidence 46889999999999998877653221111 11 12 222222 224579999999999999987 665
Q ss_pred ccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEE
Q 040165 189 GTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 189 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~ 267 (358)
.. ..+.++.++|.+|.+++..... ....+..||+.+++|+.+ ++|..+....++..+|+|+++++..... ....-.
T Consensus 98 ~r-~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~ 174 (302)
T 2xn4_A 98 RR-STLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVAS-RQCLST 174 (302)
T ss_dssp CC-BSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTT-TEECCC
T ss_pred cc-cceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCC-CccccE
Confidence 43 4477788999999999864321 124789999999999998 4554444556777899999999754211 101223
Q ss_pred EEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEee
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEIY 336 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v~ 336 (358)
+|.++.. ..+|+++..++... .....++ .++.||+.... ...+..||+++++|+++-
T Consensus 175 ~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 236 (302)
T 2xn4_A 175 VECYNAT--TNEWTYIAEMSTRR------SGAGVGV----LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA 236 (302)
T ss_dssp EEEEETT--TTEEEEECCCSSCC------BSCEEEE----ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEeCC--CCcEEECCCCcccc------ccccEEE----ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence 4555542 26899986554322 1222222 25667777542 125999999999999993
No 11
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=99.42 E-value=2.2e-11 Score=109.44 Aligned_cols=209 Identities=9% Similarity=0.037 Sum_probs=128.6
Q ss_pred ceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---------ccceEEEEEEcCCCc
Q 040165 104 GLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---------CLRVLLKVFSMKAFS 174 (358)
Q Consensus 104 Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---------~~~~~~~vyss~t~~ 174 (358)
+.|++. +.....++||.|++|...+.+ .+..+. ...+. ...+..-|+... .....+++|+..+++
T Consensus 16 ~~i~~~--GG~~~~~yd~~~~~W~~~~~~-~~~~r~-~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 16 DLILLV--NDTAAVAYDPMENECYLTALA-EQIPRN-HSSIV--TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEEEE--CSSEEEEEETTTTEEEEEEEC-TTSCSS-EEEEE--CSSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred chhhhc--cccceEEECCCCCceecccCC-ccCCcc-ceEEE--EECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 344444 444578999999999884432 111111 11111 122322222220 011238999999999
Q ss_pred eEecccccccccccccCCCCceEEECceEEEEeecCC-CCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEE
Q 040165 175 WRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFH-FGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSL 252 (358)
Q Consensus 175 W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~l 252 (358)
|+.++. +|... ..+..+.++|.+|.+++... .......+..||+.+++|+.+ ++|..+....++..+|+|++
T Consensus 90 W~~~~~-----~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 163 (318)
T 2woz_A 90 WVGLPP-----LPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163 (318)
T ss_dssp EEECSC-----BSSCB-CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEE
T ss_pred EEECCC-----CCccc-cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEE
Confidence 999987 66544 45777889999999998642 112235799999999999998 55643334456678999999
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEEC
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNL 327 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~ 327 (358)
+++......... .+|.++.. ..+|+++..++... .....++ .++.|++.... ...+..||+
T Consensus 164 ~GG~~~~~~~~~--~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 164 LGGKTDDKKCTN--RVFIYNPK--KGDWKDLAPMKTPR------SMFGVAI----HKGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp ECCEESSSCBCC--CEEEEETT--TTEEEEECCCSSCC------BSCEEEE----ETTEEEEEEEEETTEEEEEEEEEET
T ss_pred EcCCCCCCCccc--eEEEEcCC--CCEEEECCCCCCCc------ccceEEE----ECCEEEEEcCcCCCCccceEEEEEC
Confidence 997532111123 35555542 26899886554322 1222232 25677776532 125899999
Q ss_pred CCCeEEEeecc
Q 040165 328 NERTLEEIYRP 338 (358)
Q Consensus 328 ~t~~~~~v~~~ 338 (358)
++++|+++-.+
T Consensus 230 ~~~~W~~~~~~ 240 (318)
T 2woz_A 230 KTNKWEVMTEF 240 (318)
T ss_dssp TTCCEEECCCC
T ss_pred CCCeEEECCCC
Confidence 99999999433
No 12
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=99.42 E-value=1e-11 Score=111.16 Aligned_cols=199 Identities=9% Similarity=-0.004 Sum_probs=129.5
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-------ccceEEEEEEcCCCceEecccccccc
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-------CLRVLLKVFSMKAFSWRDVHYNLGVK 185 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-------~~~~~~~vyss~t~~W~~~~~~~~~~ 185 (358)
...+.++||.+++|..++++|.+......+ .. .+..-|+... .....+++|++.+++|+.++.
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~---~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~----- 107 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGC--VV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP----- 107 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEE--EE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC-----
T ss_pred cceEEEEcCCCCeEeECCCCCcccccceEE--EE---CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC-----
Confidence 356899999999999998877653322111 11 1222222111 123568999999999999987
Q ss_pred cccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCC
Q 040165 186 LFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTT 264 (358)
Q Consensus 186 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~ 264 (358)
+|... .....+.++|.+|.+++..... ....+..||+.+++|+.+ ++|..+.....+..+|+|+++++..... ...
T Consensus 108 ~p~~r-~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~ 184 (308)
T 1zgk_A 108 MSVPR-NRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLN 184 (308)
T ss_dssp CSSCC-BTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCC
T ss_pred CCcCc-cccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCC-cCc
Confidence 66543 4467788899999998754221 124799999999999998 5564444456677799999999754321 123
Q ss_pred cEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc-----ceEEEEECCCCeEEEeecc
Q 040165 265 DFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW-----REFISCNLNERTLEEIYRP 338 (358)
Q Consensus 265 ~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----~~l~~yd~~t~~~~~v~~~ 338 (358)
. +|.++.. ..+|+++..++... .....++ .++.||+..... ..++.||+++++|+++-.+
T Consensus 185 ~--~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~----~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 185 S--AECYYPE--RNEWRMITAMNTIR------SGAGVCV----LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp C--EEEEETT--TTEEEECCCCSSCC------BSCEEEE----ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred e--EEEEeCC--CCeEeeCCCCCCcc------ccceEEE----ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 4 4555542 26899876554322 1222333 256677775421 2599999999999998433
No 13
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.37 E-value=9e-11 Score=107.11 Aligned_cols=221 Identities=9% Similarity=-0.047 Sum_probs=132.2
Q ss_pred EEEeecceEEEEEe-CCceEEEEccc--ccceeccCCCC-CCCCCCceEEEeEeCCCCCeEEEEEE--------ccceEE
Q 040165 98 IIGSCNGLVCMALH-GCKDFFIYNPS--TRAHKKLPDPD-ISLGSPYLYGFGYDSSTDDYKVLAVS--------CLRVLL 165 (358)
Q Consensus 98 ~~~s~~Gll~~~~~-~~~~~~V~NP~--T~~~~~lP~~~-~~~~~~~~~~~~~d~~~~~ykvv~~~--------~~~~~~ 165 (358)
..+..+|.|.+... ...+++++||. +++|..++++| .++... .+ ..+ .+..-|+... .....+
T Consensus 14 ~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~-~~~---~~~lyv~GG~~~~~~~~~~~~~~v 88 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TS-AFI---DGNLYVFGGIGKNSEGLTQVFNDV 88 (357)
T ss_dssp EEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EE-EEE---TTEEEEECCEEECTTSCEEECCCE
T ss_pred EEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eE-EEE---CCEEEEEcCCCCCCCccceeeccE
Confidence 33444777766522 34678999998 49999999877 343221 11 111 1222222211 113579
Q ss_pred EEEEcCCCceEecccccccccc-cccCCCCceEEECceEEEEeecCCCC-------------------------------
Q 040165 166 KVFSMKAFSWRDVHYNLGVKLF-YGTESPPKGCLFNGALHWLVSGFHFG------------------------------- 213 (358)
Q Consensus 166 ~vyss~t~~W~~~~~~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~~~------------------------------- 213 (358)
++|++.+++|+.+.. ++ ... ....++..+|+||.+++.....
T Consensus 89 ~~yd~~~~~W~~~~~-----~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (357)
T 2uvk_A 89 HKYNPKTNSWVKLMS-----HAPMGM-AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE 162 (357)
T ss_dssp EEEETTTTEEEECSC-----CCSSCC-SSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred EEEeCCCCcEEECCC-----CCCccc-ccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence 999999999999987 44 322 3455677999999999753210
Q ss_pred --CCCcEEEEEECCCCeeEEe-cCCCCC-CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecC
Q 040165 214 --SQDPVIIAFDLAEEKFCRV-GEACHP-RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDND 289 (358)
Q Consensus 214 --~~~~~i~~fD~~~~~~~~i-~~P~~~-~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~ 289 (358)
.....+..||+.+++|+.+ ++|... ....++..+++|+++++..+. ....-++|.++-+.....|+++..++..
T Consensus 163 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~~d~d~~~~~W~~~~~~~~~ 240 (357)
T 2uvk_A 163 DYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKP--GLRTDAVFELDFTGNNLKWNKLAPVSSP 240 (357)
T ss_dssp GGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEET--TEECCCEEEEECC---CEEEECCCSSTT
T ss_pred ccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCC--CcccCceEEEEecCCCCcEEecCCCCCC
Confidence 0125899999999999998 566433 336778889999999875421 1122344555421123689988666422
Q ss_pred CccccCceeeEEEEeeecCCCcEEEEEcCc----------------------ceEEEEECCCCeEEEeeccc
Q 040165 290 IMVRYHGSLVTLCTATGTDGGDEIIMINKW----------------------REFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~----------------------~~l~~yd~~t~~~~~v~~~~ 339 (358)
.. .....+++ .++.||+..... ..+..||+++++|+++-.++
T Consensus 241 ~~----~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 304 (357)
T 2uvk_A 241 DG----VAGGFAGI----SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS 304 (357)
T ss_dssp TC----CBSCEEEE----ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS
T ss_pred cc----cccceEEE----ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC
Confidence 10 11122222 256677765421 14889999999999994443
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.31 E-value=2.8e-10 Score=103.81 Aligned_cols=214 Identities=9% Similarity=0.045 Sum_probs=129.3
Q ss_pred EEEeecceEEEEEeC----------CceEEEEcccccceeccCCCC-CCCCCCceEEEeEeCCCCCeEEEEEE--c----
Q 040165 98 IIGSCNGLVCMALHG----------CKDFFIYNPSTRAHKKLPDPD-ISLGSPYLYGFGYDSSTDDYKVLAVS--C---- 160 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~----------~~~~~V~NP~T~~~~~lP~~~-~~~~~~~~~~~~~d~~~~~ykvv~~~--~---- 160 (358)
..+..+|.|.+.... ...+.++||.|++|..+++++ ... .......+ .+ +++.+. .
T Consensus 60 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r--~~~~~~~~---~~--~iyv~GG~~~~~~ 132 (357)
T 2uvk_A 60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGM--AGHVTFVH---NG--KAYVTGGVNQNIF 132 (357)
T ss_dssp EEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCC--SSEEEEEE---TT--EEEEEECCCHHHH
T ss_pred eEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccc--ccceEEEE---CC--EEEEEeCcCCCcC
Confidence 455567776655221 246899999999999999876 222 11111111 22 333332 1
Q ss_pred ---------------------------------cceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEe
Q 040165 161 ---------------------------------LRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLV 207 (358)
Q Consensus 161 ---------------------------------~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~ 207 (358)
....+++|+..+++|+.+.. +|.........+.++|.||.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-----~p~~~~~~~~~~~~~~~iyv~G 207 (357)
T 2uvk_A 133 NGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE-----SPWYGTAGAAVVNKGDKTWLIN 207 (357)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE-----CSSCCCBSCEEEEETTEEEEEC
T ss_pred cccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC-----CCCCCcccccEEEECCEEEEEe
Confidence 12689999999999999876 6654434467788999999998
Q ss_pred ecCCCCCCCcEEEEEEC--CCCeeEEe-cCCCCC--CceEEEEECCeeEEEeeccccc--------------CCCCcEEE
Q 040165 208 SGFHFGSQDPVIIAFDL--AEEKFCRV-GEACHP--RSVSLGVVGGCLSLNVCCSNCV--------------DKTTDFEL 268 (358)
Q Consensus 208 ~~~~~~~~~~~i~~fD~--~~~~~~~i-~~P~~~--~~~~l~~~~g~L~lv~~~~~~~--------------~~~~~~~v 268 (358)
+..........+..||+ .+.+|+.+ ++|... ....++..+|+|+++++..... .....-.+
T Consensus 208 G~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (357)
T 2uvk_A 208 GEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYST 287 (357)
T ss_dssp CEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECC
T ss_pred eecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeE
Confidence 75322111246778876 89999998 445322 3455788899999999743110 01112344
Q ss_pred EEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc------ceEEEEECCCCeEEEe
Q 040165 269 WVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW------REFISCNLNERTLEEI 335 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~------~~l~~yd~~t~~~~~v 335 (358)
|.++.. ..+|+++..++.... ....++ .+++|++..... +.++.+++++++|.+.
T Consensus 288 ~~yd~~--~~~W~~~~~~p~~r~------~~~~~~----~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 288 DIHLWH--NGKWDKSGELSQGRA------YGVSLP----WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEECC-----CEEEEECSSCCB------SSEEEE----ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred EEEecC--CCceeeCCCCCCCcc------cceeEE----eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 555442 268999877664331 122222 256777765421 2599999999999887
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.20 E-value=1.1e-09 Score=108.75 Aligned_cols=217 Identities=9% Similarity=-0.070 Sum_probs=130.3
Q ss_pred EEeecceEEEEEe----CCceEEEEcccccceeccC-CCC---CCCCCCceEEEeEeCCCCCeEEEEEE----ccceEEE
Q 040165 99 IGSCNGLVCMALH----GCKDFFIYNPSTRAHKKLP-DPD---ISLGSPYLYGFGYDSSTDDYKVLAVS----CLRVLLK 166 (358)
Q Consensus 99 ~~s~~Gll~~~~~----~~~~~~V~NP~T~~~~~lP-~~~---~~~~~~~~~~~~~d~~~~~ykvv~~~----~~~~~~~ 166 (358)
.+..+|.|.+... ....++++||.|++|..++ +.+ .+..+.......+ ...+...|++.. .....++
T Consensus 393 ~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 393 VDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp EEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCE
T ss_pred EEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEE
Confidence 3335666666522 1356899999999999998 521 1111111111111 102222222211 1246799
Q ss_pred EEEcCCCceEecccccccccccccCCCCceEEE-CceEEEEeecCCCCCCCcEEEEEECCCCeeEEec----CCCCCCce
Q 040165 167 VFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF-NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG----EACHPRSV 241 (358)
Q Consensus 167 vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~----~P~~~~~~ 241 (358)
+|+..+++|+.++. +|... ..+.++.+ +|.+|.+++..... .+..||+.+++|+.++ +|..+...
T Consensus 472 ~yd~~t~~W~~~~~-----~p~~R-~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~ 541 (695)
T 2zwa_A 472 IFDMKTREWSMIKS-----LSHTR-FRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVS 541 (695)
T ss_dssp EEETTTTEEEECCC-----CSBCC-BSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBS
T ss_pred EEeCCCCcEEECCC-----CCCCc-ccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccce
Confidence 99999999999987 66544 44666665 99999999875332 7999999999999986 45333233
Q ss_pred EEEEEC---CeeEEEeeccccc-CCCCcEEEEEEccCCCCCc------eeEEEEeecCCccccCceeeEEEEeeecCCCc
Q 040165 242 SLGVVG---GCLSLNVCCSNCV-DKTTDFELWVMKQYGVHSS------WERLTKIDNDIMVRYHGSLVTLCTATGTDGGD 311 (358)
Q Consensus 242 ~l~~~~---g~L~lv~~~~~~~-~~~~~~~vW~l~~~~~~~~------W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~ 311 (358)
..++.+ |+|+++++..... .....+.+|.++. .. |+++..++... +.....++ ..++.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~----~~w~~~~~W~~~~~~p~~~-----R~~~~~~~---~~~~~ 609 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA----ENATEPITVIKKLQHPLFQ-----RYGSQIKY---ITPRK 609 (695)
T ss_dssp CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT----TCSSCCEEEEEEEECGGGC-----CBSCEEEE---EETTE
T ss_pred eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC----CccccceEEEEcCCCCCCC-----cccceEEE---eCCCE
Confidence 333334 8999999753211 1134455555544 34 88887753211 11222333 22266
Q ss_pred EEEEEcC--------cceEEEEECCCCeEEEeeccc
Q 040165 312 EIIMINK--------WREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 312 i~~~~~~--------~~~l~~yd~~t~~~~~v~~~~ 339 (358)
||+..+. ...++.||+++++|+.+ .+.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~~p 644 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLTSI-PIS 644 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEEEC-CCC
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEEEe-ecc
Confidence 7776542 22599999999999977 654
No 16
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.98 E-value=5.4e-11 Score=76.56 Aligned_cols=41 Identities=32% Similarity=0.439 Sum_probs=38.3
Q ss_pred CCCChHHHHHHHHhccCCcccceeeeecccccccccCChHHH
Q 040165 1 MWSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFA 42 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~ 42 (358)
+..||+|++. +||++||.++++++++|||+|+.++.++.|-
T Consensus 9 ~~~LP~eil~-~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 9 WDSLPDELLL-GIFSCLCLPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp CCSSCHHHHH-HHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred HHHCCHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence 4689999999 9999999999999999999999999998763
No 17
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.96 E-value=9.4e-11 Score=102.33 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHhccCCcccce-eeeecccccccccCChHHHHHHHhhc
Q 040165 1 MWSIPKDILEAEILCRLPIKSLL-RFKCVSKEWHCLISDPKFALYRQKKQ 49 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rLp~~~l~-r~r~VcK~W~~li~~p~F~~~~~~~~ 49 (358)
|+.||+|+|. +||+|||+++|+ ||++|||+|++++++|.|.+.++.+.
T Consensus 51 ~~~LP~ell~-~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 51 LAELPEPLLL-RVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp TTSSCHHHHH-HHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhCCHHHHH-HHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 5689999999 999999999999 99999999999999999999998776
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.95 E-value=6e-08 Score=95.75 Aligned_cols=108 Identities=8% Similarity=0.041 Sum_probs=72.9
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceEecccccccccccccCCC
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESP 193 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~ 193 (358)
.+.++||.|++|..++.++....... .+..+.. .+ +++.+. .....+++|++.+++|..+.. |+... ..
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~-~~~~~~~-~g--~lyv~GG~~~~~v~~yd~~t~~W~~~~~-----~~~~R-~~ 289 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFC-PGISMDG-NG--QIVVTGGNDAKKTSLYDSSSDSWIPGPD-----MQVAR-GY 289 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSS-CEEEECT-TS--CEEEECSSSTTCEEEEEGGGTEEEECCC-----CSSCC-SS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCcc-ccccCCC-CC--CEEEeCCCCCCceEEecCcCCceeECCC-----CCccc-cc
Confidence 57899999999999987765432221 1111111 12 233332 223479999999999999886 66544 44
Q ss_pred CceEEE-CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe
Q 040165 194 PKGCLF-NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV 232 (358)
Q Consensus 194 ~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i 232 (358)
+.++.+ +|++|.+++..........+..||+.+++|+.+
T Consensus 290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 666777 999999998432222235799999999999987
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.78 E-value=8.2e-08 Score=94.80 Aligned_cols=198 Identities=9% Similarity=-0.084 Sum_probs=116.6
Q ss_pred EEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-c--------cceEEEEEEcCCCceEeccccccccc
Q 040165 116 FFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-C--------LRVLLKVFSMKAFSWRDVHYNLGVKL 186 (358)
Q Consensus 116 ~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~--------~~~~~~vyss~t~~W~~~~~~~~~~~ 186 (358)
+..+||.+++|..++++|.. .... .+.+..+..-|+... . ....+++|++.+++|+.+.. +
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~---~~~~--av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-----~ 237 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIV---PAAA--AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-----T 237 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSC---CSEE--EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-----E
T ss_pred cccCCCCCCeeeeeccCCCC---ceeE--EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc-----c
Confidence 34568999999988777642 1122 222323322222211 0 12478999999999998876 5
Q ss_pred ccccCCCC-c-eEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEEEeecccccCC
Q 040165 187 FYGTESPP-K-GCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSLNVCCSNCVDK 262 (358)
Q Consensus 187 ~~~~~~~~-~-~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~ 262 (358)
+....... . ++..+|.||.+++... ..+..||+.+++|..+ ++|..+.....+.+ +|+|+++++..+....
T Consensus 238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 238 VTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVF 312 (656)
T ss_dssp ECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSC
T ss_pred CCCCCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcc
Confidence 54332222 2 2346899999998652 3799999999999998 44544455677787 9999999974321122
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCc------eeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHG------SLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
...+++|..+. .+|+.+.......+..... .-....+ ++.+|.++...... .+..||+++++|...
T Consensus 313 ~~~~e~yd~~t----~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~--Gg~~g~~~~~~~~~-~v~~yd~~~~~w~~~ 384 (656)
T 1k3i_A 313 EKNGEVYSPSS----KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF--GWKKGSVFQAGPST-AMNWYYTSGSGDVKS 384 (656)
T ss_dssp CCCEEEEETTT----TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE--ECGGGCEEECCSSS-EEEEEECSTTCEEEE
T ss_pred cccceEeCCCC----CcceeCCCccccccccccccceeecCCceEEE--ECCCCcEEEecCcc-ceeeeecCCcceeec
Confidence 45666666554 6898863221111111000 0011111 23344444333333 499999999998754
No 20
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.78 E-value=2.2e-06 Score=80.02 Aligned_cols=281 Identities=11% Similarity=0.078 Sum_probs=143.4
Q ss_pred CCCChHHHHHHHHhccCCcccceeeeecccccccccCChHHHHHHHhhccCcCCCCCccceEEEee-eCCC----ccccc
Q 040165 1 MWSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFALYRQKKQGEIDNNNTIHQRVLVLA-ISPD----RLQSL 75 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~----~~~~~ 75 (358)
++.||+|++. +||+.|++++|+++.+|||+|+.++.++.+-+......+... ++..-... .... .....
T Consensus 19 ~~~lp~e~~~-~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~wk~~ 92 (445)
T 2ovr_B 19 ISLLPKELAL-YVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDE-----PLHIKRRKVIKPGFIHSPWKSA 92 (445)
T ss_dssp TTSSCHHHHH-HHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCS-----CCCCCC--CCSSCCCCCHHHHH
T ss_pred hHHCCHHHHH-HHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeeccccc-----ccccccceecCCCccCCcHHHH
Confidence 4689999999 999999999999999999999999999988776654431110 00000000 0000 00000
Q ss_pred ccC----CcceeecccCCC--CCCCC-C-e-EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeE
Q 040165 76 HCL----TRCITELNFNFP--FESIP-N-V-IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGY 146 (358)
Q Consensus 76 ~~~----~~~~~~~~~~~p--~~~~~-~-~-~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~ 146 (358)
+.. ...+..-.+..+ +.... . . .+...+.+++.. ..++.+.|||..+++....-..+. .....+.+
T Consensus 93 ~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~ 167 (445)
T 2ovr_B 93 YIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSG-SDDNTLKVWSAVTGKCLRTLVGHT----GGVWSSQM 167 (445)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEE-ETTSCEEEEETTTCCEEEECCCCS----SCEEEEEE
T ss_pred HhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEE-ECCCcEEEEECCCCcEEEEEcCCC----CCEEEEEe
Confidence 000 000000000000 00111 1 2 344444444443 577889999999887654322111 11334445
Q ss_pred eCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCC
Q 040165 147 DSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE 226 (358)
Q Consensus 147 d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~ 226 (358)
+ +.+-+.+ .....+.+++..+++-... +.. ....-.++..+|.....+... ..|..+|+.+
T Consensus 168 ~---~~~l~s~--~~dg~i~vwd~~~~~~~~~-------~~~-h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~ 228 (445)
T 2ovr_B 168 R---DNIIISG--STDRTLKVWNAETGECIHT-------LYG-HTSTVRCMHLHEKRVVSGSRD------ATLRVWDIET 228 (445)
T ss_dssp E---TTEEEEE--ETTSCEEEEETTTTEEEEE-------ECC-CSSCEEEEEEETTEEEEEETT------SEEEEEESSS
T ss_pred c---CCEEEEE--eCCCeEEEEECCcCcEEEE-------ECC-CCCcEEEEEecCCEEEEEeCC------CEEEEEECCC
Confidence 4 2332222 3556789999887743211 110 001122444556554444443 4899999987
Q ss_pred CeeEE-ecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEee
Q 040165 227 EKFCR-VGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTAT 305 (358)
Q Consensus 227 ~~~~~-i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 305 (358)
++-.. +.... ........+|...+++. ....+.+|.++. . ..+..+.... .....+.+
T Consensus 229 ~~~~~~~~~~~--~~v~~~~~~~~~l~~~~------~dg~i~iwd~~~----~--~~~~~~~~~~-----~~v~~~~~-- 287 (445)
T 2ovr_B 229 GQCLHVLMGHV--AAVRCVQYDGRRVVSGA------YDFMVKVWDPET----E--TCLHTLQGHT-----NRVYSLQF-- 287 (445)
T ss_dssp CCEEEEEECCS--SCEEEEEECSSCEEEEE------TTSCEEEEEGGG----T--EEEEEECCCS-----SCEEEEEE--
T ss_pred CcEEEEEcCCc--ccEEEEEECCCEEEEEc------CCCEEEEEECCC----C--cEeEEecCCC-----CceEEEEE--
Confidence 65432 22221 12222333777766662 346799998765 1 2333333211 11222222
Q ss_pred ecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 306 GTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 306 ~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
++..++.....+.+..||+++++....
T Consensus 288 ---~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 288 ---DGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp ---CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ---CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 455444443333588999988765443
No 21
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.78 E-value=1.4e-06 Score=81.59 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHhccCCcccceeeeecccccccccCC-hHHHHHHH
Q 040165 2 WSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISD-PKFALYRQ 46 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~-p~F~~~~~ 46 (358)
..||+|++. +||+.||+++|+++..|||+|+.++.+ +..-+.+.
T Consensus 16 ~~lp~~~~~-~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 16 TSLPFEISL-KIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHSCHHHHH-HHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred HHCCHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 369999999 999999999999999999999999998 66555544
No 22
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.73 E-value=9.9e-07 Score=82.26 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=138.2
Q ss_pred CCChHH----HHHHHHhccCCcccceeeeecccccccccCChHHHHHHHhhccCcCCC------CCccc-eEEEee----
Q 040165 2 WSIPKD----ILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFALYRQKKQGEIDNN------NTIHQ-RVLVLA---- 66 (358)
Q Consensus 2 ~~LP~d----ll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~------~~~~~-~ll~~~---- 66 (358)
+.||+| ++. .||+.|++++|+++.+|||+|+.++.++.+-+....+.. .... ....+ ..++..
T Consensus 12 ~~lp~e~~~~~~~-~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~ 89 (435)
T 1p22_A 12 TALPARGLDHIAE-NILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV-RTDSLWRGLAERRGWGQYLFKNKPPD 89 (435)
T ss_dssp HHTGGGTCHHHHH-HHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH-TSCHHHHHHHHSSSGGGGCC------
T ss_pred HHCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc-CcchhhhhhhhccchhhhhhccCCCC
Confidence 469999 999 999999999999999999999999998776554433220 0000 00000 000000
Q ss_pred eC--CCc-ccccccC--------CcceeecccCC-CCC---CCC-Ce-EEEeecceEEEEEeCCceEEEEcccccceecc
Q 040165 67 IS--PDR-LQSLHCL--------TRCITELNFNF-PFE---SIP-NV-IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKL 129 (358)
Q Consensus 67 ~~--~~~-~~~~~~~--------~~~~~~~~~~~-p~~---~~~-~~-~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~l 129 (358)
.. ... ....+.. ...+....+.. ... ... .. .+.. +|-.++.....+.+.|+|..+++....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~l~~g~~dg~i~iwd~~~~~~~~~ 168 (435)
T 1p22_A 90 GNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRI 168 (435)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEEC-CSSEEEEEESSSCEEEEESSSCCEEEE
T ss_pred CCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEE-CCCEEEEEeCCCeEEEEeCCCCeEEEE
Confidence 00 000 0000000 00000000000 000 001 23 3333 343333325677899999988776544
Q ss_pred CCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeec
Q 040165 130 PDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSG 209 (358)
Q Consensus 130 P~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~ 209 (358)
-..+. .....+.+ .+++-+.+ .....+.+++..+++-...-. . ....-.++.+++.....+..
T Consensus 169 ~~~h~----~~v~~l~~---~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~-------~-h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 169 LTGHT----GSVLCLQY---DERVIITG--SSDSTVRVWDVNTGEMLNTLI-------H-HCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp ECCCS----SCEEEEEC---CSSEEEEE--ETTSCEEEEESSSCCEEEEEC-------C-CCSCEEEEECCTTEEEEEET
T ss_pred EcCCC----CcEEEEEE---CCCEEEEE--cCCCeEEEEECCCCcEEEEEc-------C-CCCcEEEEEEcCCEEEEeeC
Confidence 22211 11334444 23333333 355678999988875322111 0 00112234445554444443
Q ss_pred CCCCCCCcEEEEEECCCCeeEEe-c-CCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEee
Q 040165 210 FHFGSQDPVIIAFDLAEEKFCRV-G-EACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKID 287 (358)
Q Consensus 210 ~~~~~~~~~i~~fD~~~~~~~~i-~-~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~ 287 (358)
. ..|..+|+.+..-... . +..+...+.....+|...+++. ....+.+|.++.. ..+..+.
T Consensus 232 d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~------~dg~i~vwd~~~~------~~~~~~~ 293 (435)
T 1p22_A 232 D------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS------GDRTIKVWNTSTC------EFVRTLN 293 (435)
T ss_dssp T------SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE------TTSEEEEEETTTC------CEEEEEE
T ss_pred C------CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEe------CCCeEEEEECCcC------cEEEEEc
Confidence 2 4788999887643211 1 1112222222333666555552 3468999987651 2344443
Q ss_pred cCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 288 NDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
... .....+.+ +++.++.....+.+..||+++++....
T Consensus 294 ~~~-----~~v~~~~~-----~~~~l~~g~~dg~i~iwd~~~~~~~~~ 331 (435)
T 1p22_A 294 GHK-----RGIACLQY-----RDRLVVSGSSDNTIRLWDIECGACLRV 331 (435)
T ss_dssp CCS-----SCEEEEEE-----ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCC-----CcEEEEEe-----CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 221 11222222 455555444333599999998765443
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=98.71 E-value=1.7e-07 Score=93.00 Aligned_cols=162 Identities=8% Similarity=-0.077 Sum_probs=103.9
Q ss_pred ceEEEEEEcCCCceEecc-cccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCC
Q 040165 162 RVLLKVFSMKAFSWRDVH-YNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACH 237 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~-~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~ 237 (358)
...+++|+..+++|+.+. ..+...+|... ..+.++.+ +|.+|.+++..........+..||+.+++|+.+ ++|..
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R-~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~ 489 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVAR-MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCC-BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccc-cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC
Confidence 456999999999999887 31111133332 34777888 999999998754322235689999999999998 55644
Q ss_pred CCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEE
Q 040165 238 PRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMI 316 (358)
Q Consensus 238 ~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 316 (358)
+.....+.. +|+|+++++... .. .+|.++.. ...|+.+........... ....+++ +...+.||+..
T Consensus 490 R~~h~~~~~~~~~iyv~GG~~~----~~--~v~~yd~~--t~~W~~~~~~g~~p~~r~--~~~a~v~--~~~~~~iyv~G 557 (695)
T 2zwa_A 490 RFRHSACSLPDGNVLILGGVTE----GP--AMLLYNVT--EEIFKDVTPKDEFFQNSL--VSAGLEF--DPVSKQGIILG 557 (695)
T ss_dssp CBSCEEEECTTSCEEEECCBCS----SC--SEEEEETT--TTEEEECCCSSGGGGSCC--BSCEEEE--ETTTTEEEEEC
T ss_pred cccceEEEEcCCEEEEECCCCC----CC--CEEEEECC--CCceEEccCCCCCCCccc--ceeEEEE--eCCCCEEEEEC
Confidence 444556665 999999997532 12 56666652 268988765221111111 1222232 23336688776
Q ss_pred cC-------cceEEEEECCCCe------EEEee
Q 040165 317 NK-------WREFISCNLNERT------LEEIY 336 (358)
Q Consensus 317 ~~-------~~~l~~yd~~t~~------~~~v~ 336 (358)
+. ...++.||+++++ |+++-
T Consensus 558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~ 590 (695)
T 2zwa_A 558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKL 590 (695)
T ss_dssp CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE
T ss_pred CcCCCCCeeeCcEEEEEccCCccccceEEEEcC
Confidence 43 1259999999999 88883
No 24
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.78 E-value=2e-06 Score=74.30 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHhccCCcccceeeeecccccccccCChHHHHHHHhhc
Q 040165 2 WSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPKFALYRQKKQ 49 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~ 49 (358)
+.||+|++. .||+.|++++|+++.+|||+||.+.+++..-+.+..+.
T Consensus 6 ~~LP~ei~l-~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 6 TRLPIDVQL-YILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHSCHHHHH-HHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred HhCCHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 579999999 99999999999999999999999999999888887765
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.18 E-value=4.4e-05 Score=68.39 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=36.0
Q ss_pred CCCChHHHHHHHHhccCCcccceeeeecccccccccCChH
Q 040165 1 MWSIPKDILEAEILCRLPIKSLLRFKCVSKEWHCLISDPK 40 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rLp~~~l~r~r~VcK~W~~li~~p~ 40 (358)
++.||+|++. +||.+|+.+++.+++.|||+|+.++.+|.
T Consensus 9 ~~~LP~eil~-~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 9 WDSLPDELLL-GIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp SSSSCHHHHH-HHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred hhhCCHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 4689999999 99999999999999999999999987665
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.50 E-value=0.00028 Score=68.35 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=29.4
Q ss_pred CCCChHHHHHHHHhccCC-cccceeeeecccccccc
Q 040165 1 MWSIPKDILEAEILCRLP-IKSLLRFKCVSKEWHCL 35 (358)
Q Consensus 1 ~~~LP~dll~~~IL~rLp-~~~l~r~r~VcK~W~~l 35 (358)
++.||+|++. +||++|| .+++.+++.|||+|+.+
T Consensus 6 ~~~LPdevL~-~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLE-HVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHH-HHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHH-HHHhhcCCchhHHHHHHHHHHHHHh
Confidence 3689999999 9999999 99999999999999988
No 27
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.12 E-value=0.64 Score=40.85 Aligned_cols=196 Identities=8% Similarity=-0.044 Sum_probs=108.0
Q ss_pred cceEEEEEeC-----CceEEEEcccccceec-cCCC-CCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce
Q 040165 103 NGLVCMALHG-----CKDFFIYNPSTRAHKK-LPDP-DISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW 175 (358)
Q Consensus 103 ~Gll~~~~~~-----~~~~~V~NP~T~~~~~-lP~~-~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W 175 (358)
+|+.++. .+ ...+.++||.|++... +... ...........+.++. ....+.. .....+.+++..+++-
T Consensus 2 ~g~~v~n-eg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~lyv~~-~~~~~v~viD~~t~~~ 76 (328)
T 3dsm_A 2 SGLFITN-EGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GIGWIVV-NNSHVIFAIDINTFKE 76 (328)
T ss_dssp CEEEEEE-CCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TEEEEEE-GGGTEEEEEETTTCCE
T ss_pred CeEEEEe-cCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CEEEEEE-cCCCEEEEEECcccEE
Confidence 4666665 32 5789999999988754 2110 0000001123334443 2222222 4557899999998764
Q ss_pred -EecccccccccccccCCCCceEE-ECceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCCC-C---CCceEEEEECC
Q 040165 176 -RDVHYNLGVKLFYGTESPPKGCL-FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEAC-H---PRSVSLGVVGG 248 (358)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~-~---~~~~~l~~~~g 248 (358)
+.++. ...| ..-+. -+|.+|+..... ..|..+|+.+.+.. .++.+. . ..-..++..+|
T Consensus 77 ~~~i~~---~~~p------~~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~ 141 (328)
T 3dsm_A 77 VGRITG---FTSP------RYIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGK 141 (328)
T ss_dssp EEEEEC---CSSE------EEEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETT
T ss_pred EEEcCC---CCCC------cEEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECC
Confidence 22321 0011 12223 588888877432 48999999998764 455542 0 01223444788
Q ss_pred eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCc---------
Q 040165 249 CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKW--------- 319 (358)
Q Consensus 249 ~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--------- 319 (358)
+|++.. ......+.++.++. .+ .+.+++.... ..-+++ ..+|++++...+.
T Consensus 142 ~lyv~~-----~~~~~~v~viD~~t----~~--~~~~i~~g~~------p~~i~~---~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 142 YVYVNC-----WSYQNRILKIDTET----DK--VVDELTIGIQ------PTSLVM---DKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp EEEEEE-----CTTCCEEEEEETTT----TE--EEEEEECSSC------BCCCEE---CTTSEEEEEBCCBCTTCSSCBC
T ss_pred EEEEEc-----CCCCCEEEEEECCC----Ce--EEEEEEcCCC------ccceEE---cCCCCEEEEECCCccCCccccC
Confidence 998886 21234566665443 22 3344544221 223444 5567788776543
Q ss_pred -ceEEEEECCCCeEEEeecc
Q 040165 320 -REFISCNLNERTLEEIYRP 338 (358)
Q Consensus 320 -~~l~~yd~~t~~~~~v~~~ 338 (358)
..++.+|++++++.+...+
T Consensus 202 ~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp CCEEEEEETTTTEEEEEEEC
T ss_pred CceEEEEECCCCeEEEEEec
Confidence 3599999999988754354
No 28
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=95.97 E-value=0.64 Score=39.49 Aligned_cols=192 Identities=11% Similarity=-0.021 Sum_probs=99.7
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
+....+|.+.+.......++++|| +++......+.. .....++.+|+... +.........+.+|+. +++...
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~-~g~~~~ 175 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK---GSYPSFITLGSDNA---LWFTENQNNAIGRITE-SGDITE 175 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSC---EEEEETTTTEEEEECT-TCCEEE
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC---CCCCceEEEcCCCC---EEEEeCCCCEEEEEcC-CCcEEE
Confidence 333346776665234678899999 776665432211 11245566676532 2221123456778887 776655
Q ss_pred cccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCC-CCceEEEEE-CCeeEEE
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACH-PRSVSLGVV-GGCLSLN 253 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~-~~~~~l~~~-~g~L~lv 253 (358)
... +... ....++.+ +|.+|+..... ..|..||+ ++++..+..|.. .....++.. +|+|++.
T Consensus 176 ~~~------~~~~-~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 176 FKI------PTPA-SGPVGITKGNDDALWFVEIIG------NKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEC------SSTT-CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred eeC------CCCC-CcceeEEECCCCCEEEEccCC------ceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 422 1111 11223333 57876654332 48999999 777777666622 123345543 7888877
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
. . ....+.+|..+ .. ...+.... . ...+.++.. .+|.|++..... .+..||+++++.+
T Consensus 242 ~-----~-~~~~i~~~d~~-----g~---~~~~~~~~---~--~~~~~~i~~--~~g~l~v~~~~~-~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 242 E-----W-GANKIGRLTSN-----NI---IEEYPIQI---K--SAEPHGICF--DGETIWFAMECD-KIGKLTLIKDNME 299 (299)
T ss_dssp E-----T-TTTEEEEEETT-----TE---EEEEECSS---S--SCCEEEEEE--CSSCEEEEETTT-EEEEEEEC-----
T ss_pred c-----c-CCceEEEECCC-----Cc---eEEEeCCC---C--CCccceEEe--cCCCEEEEecCC-cEEEEEcCcccCC
Confidence 6 2 23455555431 22 12222111 0 123444432 567788886544 4999999988754
No 29
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.78 E-value=0.0012 Score=63.73 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=30.7
Q ss_pred CChHHHHHHHHhccC-Ccccceeeeecccccccc
Q 040165 3 SIPKDILEAEILCRL-PIKSLLRFKCVSKEWHCL 35 (358)
Q Consensus 3 ~LP~dll~~~IL~rL-p~~~l~r~r~VcK~W~~l 35 (358)
.||+|++. +||.+| |.+++.+++.|||+|+.+
T Consensus 15 ~LPdeil~-~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 15 ATVDDVIE-QVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCGGGTHH-HHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHH-HHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 69999999 999999 899999999999999887
No 30
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.58 E-value=1.2 Score=39.67 Aligned_cols=188 Identities=6% Similarity=-0.008 Sum_probs=100.4
Q ss_pred eEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccc
Q 040165 105 LVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGV 184 (358)
Q Consensus 105 ll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~ 184 (358)
.+++.......+.++|..+++....-.... ....+.+++..+ +-++.. .....+.+++..+++-...-.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~-~l~~~~-~~d~~i~v~d~~~~~~~~~~~---- 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-----NPMGAVISPDGT-KVYVAN-AHSNDVSIIDTATNNVIATVP---- 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSS-EEEEEE-GGGTEEEEEETTTTEEEEEEE----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-----CcceEEECCCCC-EEEEEC-CCCCeEEEEECCCCeEEEEEE----
Confidence 444443356788999999887655322221 134556666543 332222 356789999998876533211
Q ss_pred ccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEEEeeccccc
Q 040165 185 KLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSLNVCCSNCV 260 (358)
Q Consensus 185 ~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~lv~~~~~~~ 260 (358)
.+. .-.++.+ +|..-+++... ...|..+|+.+++.... .... ....+... +|+..++.+
T Consensus 72 -~~~----~v~~~~~spdg~~l~~~~~~-----~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~----- 134 (391)
T 1l0q_A 72 -AGS----SPQGVAVSPDGKQVYVTNMA-----SSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTN----- 134 (391)
T ss_dssp -CSS----SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEE-----
T ss_pred -CCC----CccceEECCCCCEEEEEECC-----CCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEe-----
Confidence 111 1112222 45533333322 14899999998765432 3221 12233433 666443332
Q ss_pred CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEe
Q 040165 261 DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 261 ~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.....+.+|.++. .+. +..+.... ....+++ ..+|+ +++.....+.+..+|+++++....
T Consensus 135 ~~~~~v~~~d~~~----~~~--~~~~~~~~------~~~~~~~---~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 135 NGDKTVSVINTVT----KAV--INTVSVGR------SPKGIAV---TPDGTKVYVANFDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp TTTTEEEEEETTT----TEE--EEEEECCS------SEEEEEE---CTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCC----CcE--EEEEecCC------CcceEEE---CCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 2346888997764 222 23333221 1344455 55666 556655544699999999877655
No 31
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.24 E-value=0.79 Score=38.59 Aligned_cols=115 Identities=8% Similarity=-0.074 Sum_probs=71.7
Q ss_pred EEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCC
Q 040165 197 CLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYG 275 (358)
Q Consensus 197 v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~ 275 (358)
.+.+|.||.-++... ...|..+|+.+++- ..+++|.......++..+++|++++ . .... +|+.|.
T Consensus 27 ~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~lt-----w-~~~~--v~v~D~-- 92 (243)
T 3mbr_X 27 FYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLT-----W-RNHE--GFVYDL-- 92 (243)
T ss_dssp EEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEE-----S-SSSE--EEEEET--
T ss_pred EEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEE-----e-eCCE--EEEEEC--
Confidence 456777877666532 24899999998877 4467774322345677799999998 2 2334 455554
Q ss_pred CCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 276 VHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 276 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
..-.++.+++...- -..++ .+++.+++... ...+..+|++|.+...-..+
T Consensus 93 --~tl~~~~ti~~~~~------Gwglt----~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 93 --ATLTPRARFRYPGE------GWALT----SDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp --TTTEEEEEEECSSC------CCEEE----ECSSCEEEECS-SSEEEEECTTTCCEEEEEEC
T ss_pred --CcCcEEEEEeCCCC------ceEEe----eCCCEEEEECC-CCeEEEEeCCCCeEEEEEEE
Confidence 34567788886431 22222 23344666654 44699999999766432244
No 32
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.82 E-value=2 Score=38.10 Aligned_cols=193 Identities=8% Similarity=0.008 Sum_probs=103.3
Q ss_pred eEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccc
Q 040165 105 LVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGV 184 (358)
Q Consensus 105 ll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~ 184 (358)
.+.+.......+.++|+.+++....-.... ....+.+++..+ +-++.. .....+.+++..+++....-.
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~-~l~~~~-~~~~~v~~~d~~~~~~~~~~~---- 155 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVKTGK-----SPLGLALSPDGK-KLYVTN-NGDKTVSVINTVTKAVINTVS---- 155 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSS-EEEEEE-TTTTEEEEEETTTTEEEEEEE----
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEeCCC-----CcceEEECCCCC-EEEEEe-CCCCEEEEEECCCCcEEEEEe----
Confidence 343442245789999999987755433221 134566666543 332222 456789999998876543221
Q ss_pred ccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEEEeeccccc
Q 040165 185 KLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSLNVCCSNCV 260 (358)
Q Consensus 185 ~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~lv~~~~~~~ 260 (358)
.. . ....+.+ +|..-++.... ...|..+|+.+.+.... ... .....+... +|+..+++...
T Consensus 156 -~~--~--~~~~~~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~--- 220 (391)
T 1l0q_A 156 -VG--R--SPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGTKAYVTNVD--- 220 (391)
T ss_dssp -CC--S--SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSSEEEEEEEC---
T ss_pred -cC--C--CcceEEECCCCCEEEEEeCC-----CCEEEEEECCCCeEEEEEecC--CCccceEECCCCCEEEEEecC---
Confidence 10 0 0122222 45443344332 24799999998765432 222 111223333 56555554210
Q ss_pred CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 261 DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 261 ~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
.....+.+|.++. ...+..++... ....+++ ..+|+ |++.....+.+..||+++++.......
T Consensus 221 ~~~~~v~~~d~~~------~~~~~~~~~~~------~~~~~~~---s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 221 KYFNTVSMIDTGT------NKITARIPVGP------DPAGIAV---TPDGKKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp SSCCEEEEEETTT------TEEEEEEECCS------SEEEEEE---CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred cCCCcEEEEECCC------CeEEEEEecCC------CccEEEE---ccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 1346788888764 12344554432 1234455 55676 656655444699999999987665333
No 33
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.16 E-value=2.7 Score=36.69 Aligned_cols=121 Identities=8% Similarity=-0.044 Sum_probs=69.4
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecC-C-CCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCC
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGE-A-CHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGV 276 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~-P-~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~ 276 (358)
+|.+|.....+. ...|..||+.+++.+.+.. + .......++.. +|+..++. ......+.+|.++..
T Consensus 50 dg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~-----~~~~~~v~v~~~~~~-- 118 (347)
T 3hfq_A 50 KDCLYSVDKEDD----EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSA-----NYHKGTAEVMKIAAD-- 118 (347)
T ss_dssp TCEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEE-----ETTTTEEEEEEECTT--
T ss_pred CCeEEEEEecCC----CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEE-----eCCCCEEEEEEeCCC--
Confidence 788888776421 1489999998888776633 2 11122344444 67644444 124568999999753
Q ss_pred CCceeEEEEeecCCccc----cCceeeEEEEeeecCCCcEEEEEcCcceEEEEECC-CCeEEEe
Q 040165 277 HSSWERLTKIDNDIMVR----YHGSLVTLCTATGTDGGDEIIMINKWREFISCNLN-ERTLEEI 335 (358)
Q Consensus 277 ~~~W~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~-t~~~~~v 335 (358)
+....+..+....... .......+++ ..+|++++.....+.+..||++ ++++..+
T Consensus 119 -g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---spdg~l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 119 -GALTLTDTVQHSGHGPRPEQDGSHIHYTDL---TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp -SCEEEEEEEECCCCCSSTTCSSCCEEEEEE---CTTSCEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred -CCeeecceeecCCCCCCccccCCCceEEEE---CCCCcEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 3455555554321100 0111333555 5677766666554469999998 6666544
No 34
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=94.11 E-value=2.7 Score=36.68 Aligned_cols=200 Identities=9% Similarity=0.021 Sum_probs=101.9
Q ss_pred ecceEEEEEeCCceEEEEcccccce-eccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceE-ecc
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAH-KKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWR-DVH 179 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~-~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~-~~~ 179 (358)
.++.+.+.......+.|+|+.|++. ..++.... ..++.+++.. ++.........+.+++..+++-. .++
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~------p~~i~~~~~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS------PRYIHFLSDE---KAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS------EEEEEEEETT---EEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC------CcEEEEeCCC---eEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 4566655534567899999999887 44643211 3344554442 33332124678899999887633 222
Q ss_pred cccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCCCCCCceEEEE-ECCeeEEEeecc
Q 040165 180 YNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEACHPRSVSLGV-VGGCLSLNVCCS 257 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~l~~-~~g~L~lv~~~~ 257 (358)
.. ...........-+..+|.+|...... ...|..+|+.+.+.. .++..... ..+.. -+|+++++....
T Consensus 123 ~g---~~~~~~~~p~~i~~~~~~lyv~~~~~-----~~~v~viD~~t~~~~~~i~~g~~p--~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 123 CP---DMDMESGSTEQMVQYGKYVYVNCWSY-----QNRILKIDTETDKVVDELTIGIQP--TSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp CT---TCCTTTCBCCCEEEETTEEEEEECTT-----CCEEEEEETTTTEEEEEEECSSCB--CCCEECTTSEEEEEBCCB
T ss_pred cC---CccccCCCcceEEEECCEEEEEcCCC-----CCEEEEEECCCCeEEEEEEcCCCc--cceEEcCCCCEEEEECCC
Confidence 10 00000001122334677888775421 258999999988764 34443211 12222 378988887321
Q ss_pred cccCC--CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 258 NCVDK--TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 258 ~~~~~--~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
..... ...-.|++++... .+ ...++.... ......+++ ..+|+.++.... . ++.+|+++++..
T Consensus 193 ~~~~~~~~~~~~v~~id~~t--~~--v~~~~~~~~----g~~p~~la~---~~d~~~lyv~~~-~-v~~~d~~t~~~~ 257 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAET--FT--VEKQFKFKL----GDWPSEVQL---NGTRDTLYWINN-D-IWRMPVEADRVP 257 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTT--TE--EEEEEECCT----TCCCEEEEE---CTTSCEEEEESS-S-EEEEETTCSSCC
T ss_pred ccCCccccCCceEEEEECCC--Ce--EEEEEecCC----CCCceeEEE---ecCCCEEEEEcc-E-EEEEECCCCcee
Confidence 00000 0013445554311 23 333444321 011345565 545664444444 3 999999998864
No 35
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.04 E-value=5.2 Score=39.56 Aligned_cols=188 Identities=7% Similarity=0.054 Sum_probs=94.7
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCC-CCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSST-DDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~-~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
..+.+.|||..++....+...... ......+.+.+.. +.+-+.+ .....+.+++..++.|..+.. .....
T Consensus 29 ~dg~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~--s~Dg~I~vwd~~~~~~~~~~~-----~~~h~ 99 (753)
T 3jro_A 29 SDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASC--SYDGKVLIWKEENGRWSQIAV-----HAVHS 99 (753)
T ss_dssp TTTEEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEE--ETTSCEEEEEEETTEEEEEEE-----ECCCS
T ss_pred CCCcEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEE--eCCCeEEEEECCCCccccccc-----ccCCC
Confidence 445556666653333222221111 1124456666653 3443333 345679999999998866554 21111
Q ss_pred CCCCceEEEC----ceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCCCCC-CceEEEEE--------------CCee
Q 040165 191 ESPPKGCLFN----GALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEACHP-RSVSLGVV--------------GGCL 250 (358)
Q Consensus 191 ~~~~~~v~~~----G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~-~~~~l~~~--------------~g~L 250 (358)
..-.++.+. |.+...+... ..|..+|+.+..-. ...+..+. ....+... +|.+
T Consensus 100 -~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 100 -ASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp -SCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred -CCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 111223332 5555555443 47888998876221 11111111 11112211 3566
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCC---CcEEEEEcCcceEEEEEC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDG---GDEIIMINKWREFISCNL 327 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---g~i~~~~~~~~~l~~yd~ 327 (358)
.++++ ....+.+|.+... ...+.....+.... .....+++ ..+ |.+++.....+.+..||+
T Consensus 173 l~sgs------~dg~I~iwd~~~~--~~~~~~~~~~~~h~-----~~V~~l~~---sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 173 FVTGG------ADNLVKIWKYNSD--AQTYVLESTLEGHS-----DWVRDVAW---SPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp EEEEE------TTSCEEEEEEETT--TTEEEEEEEECCCS-----SCEEEEEE---CCCCSSSEEEEEEESSSCEEEEEE
T ss_pred EEEEE------CCCeEEEEeccCC--cccceeeeeecCCC-----CcEEEEEe---ccCCCCCCEEEEEecCCEEEEecC
Confidence 66652 3467999999863 24566666555322 12444555 444 666655544445999999
Q ss_pred CCCe
Q 040165 328 NERT 331 (358)
Q Consensus 328 ~t~~ 331 (358)
++++
T Consensus 237 ~~~~ 240 (753)
T 3jro_A 237 DNEQ 240 (753)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 8863
No 36
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.02 E-value=2.6 Score=36.12 Aligned_cols=208 Identities=6% Similarity=-0.064 Sum_probs=105.5
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
...+|-|.+.......++.+||.+++...+.... ...++.+++..+ + +++. ...+.+|+..+++++.+.
T Consensus 21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~------~~~~i~~~~dG~-l-~v~~---~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 21 EEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA------PVSSVALRQSGG-Y-VATI---GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEECSS------CEEEEEEBTTSS-E-EEEE---TTEEEEEETTTTEEEEEE
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCC------ceEEEEECCCCC-E-EEEE---CCeEEEEECCCCcEEEEE
Confidence 3335655555345678899999998765543221 144567777654 2 3332 457889999999887664
Q ss_pred cccccccccccC-CCCceEE--ECceEEEEeecCCC-----CCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCe-
Q 040165 180 YNLGVKLFYGTE-SPPKGCL--FNGALHWLVSGFHF-----GSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGC- 249 (358)
Q Consensus 180 ~~~~~~~~~~~~-~~~~~v~--~~G~lywl~~~~~~-----~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~- 249 (358)
. ...... .....+. -+|.+|+-...... ......|..+|.... ...+.-... ..-.++.. +|+
T Consensus 90 ~-----~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~-~pngi~~spdg~~ 162 (297)
T 3g4e_A 90 T-----VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVD-ISNGLDWSLDHKI 162 (297)
T ss_dssp E-----CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEES-BEEEEEECTTSCE
T ss_pred e-----cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccc-cccceEEcCCCCE
Confidence 3 111100 0011222 26887665433210 011347888887643 322211110 01123333 565
Q ss_pred eEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEe-ecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECC
Q 040165 250 LSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKI-DNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLN 328 (358)
Q Consensus 250 L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~ 328 (358)
|+++. .....+.+|.++.. .+.......+ ..... ......+++ ..+|+|++.......+..||++
T Consensus 163 lyv~~------~~~~~i~~~~~d~~--~G~~~~~~~~~~~~~~---~~~p~g~~~---d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 163 FYYID------SLSYSVDAFDYDLQ--TGQISNRRSVYKLEKE---EQIPDGMCI---DAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEEEE------GGGTEEEEEEECTT--TCCEEEEEEEEECCGG---GCEEEEEEE---BTTSCEEEEEETTTEEEEECTT
T ss_pred EEEec------CCCCcEEEEeccCC--CCcccCcEEEEECCCC---CCCCCeeEE---CCCCCEEEEEcCCCEEEEEcCC
Confidence 55554 22356766666521 1233222111 11111 111333445 5578888877554469999999
Q ss_pred CCeEEEeeccc
Q 040165 329 ERTLEEIYRPN 339 (358)
Q Consensus 329 t~~~~~v~~~~ 339 (358)
+++......+.
T Consensus 229 tG~~~~~i~~p 239 (297)
T 3g4e_A 229 TGKRLQTVKLP 239 (297)
T ss_dssp TCCEEEEEECS
T ss_pred CceEEEEEECC
Confidence 77654332554
No 37
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=93.78 E-value=1.1 Score=38.11 Aligned_cols=110 Identities=10% Similarity=-0.129 Sum_probs=68.0
Q ss_pred EEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCC
Q 040165 197 CLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYG 275 (358)
Q Consensus 197 v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~ 275 (358)
.+.+|.||.-++... ...|..+|+.+++- ..+++|.......++..+++|++++ . ....+ |+.|.
T Consensus 49 ~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~lt-----w-~~~~v--~v~D~-- 114 (262)
T 3nol_A 49 FYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLT-----W-KNGLG--FVWNI-- 114 (262)
T ss_dssp EEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEE-----S-SSSEE--EEEET--
T ss_pred EEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEE-----e-eCCEE--EEEEC--
Confidence 355788888776632 23899999999876 4456663222345677799999998 2 23344 55554
Q ss_pred CCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEE
Q 040165 276 VHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 276 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~ 334 (358)
..-.++.+++... . -..++. +|+ +++... ...+..+|++|.+...
T Consensus 115 --~t~~~~~ti~~~~-e-----G~glt~-----dg~~L~~SdG-s~~i~~iDp~T~~v~~ 160 (262)
T 3nol_A 115 --RNLRQVRSFNYDG-E-----GWGLTH-----NDQYLIMSDG-TPVLRFLDPESLTPVR 160 (262)
T ss_dssp --TTCCEEEEEECSS-C-----CCCEEE-----CSSCEEECCS-SSEEEEECTTTCSEEE
T ss_pred --ccCcEEEEEECCC-C-----ceEEec-----CCCEEEEECC-CCeEEEEcCCCCeEEE
Confidence 3455777887643 0 122332 345 555543 4469999999866533
No 38
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.68 E-value=3.8 Score=36.88 Aligned_cols=189 Identities=12% Similarity=0.048 Sum_probs=94.7
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNL 182 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~ 182 (358)
.+.|++. ....+..+++.++....+-... ....++.+|+..+...++- .....+..++..++..+.+..
T Consensus 87 ~~~l~~~--~~~~I~~i~~~~~~~~~~~~~~-----~~~~gl~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~-- 155 (386)
T 3v65_B 87 EPVLLFA--NRIDIRQVLPHRSEYTLLLNNL-----ENAIALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVS-- 155 (386)
T ss_dssp CCEEEEE--CBSCEEEECTTSCCCEEEECSC-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCEEEEEC--
T ss_pred cceeEee--cCccceeeccCCCcEEEEecCC-----CccEEEEEecCCCeEEEEe--CCCCcEEEEecCCCCcEEEEe--
Confidence 4556555 4456777777766554432211 1267788888766433322 234567777777665544322
Q ss_pred ccccccccCCCCceEE---ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEeec
Q 040165 183 GVKLFYGTESPPKGCL---FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNVCC 256 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~~~ 256 (358)
... ....++. .+|.|||..... ..|..+|+....-..+ ..... .-..+++. +|.||+..
T Consensus 156 -----~~~-~~p~glavd~~~g~lY~~d~~~------~~I~~~~~dg~~~~~l~~~~l~-~P~giavdp~~g~ly~td-- 220 (386)
T 3v65_B 156 -----TGL-ESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLLWQSLE-KPRAIALHPMEGTIYWTD-- 220 (386)
T ss_dssp -----SSC-SCCCCEEEETTTTEEEEEETTT------TEEEECBTTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEE--
T ss_pred -----CCC-CCccEEEEEeCCCeEEEEcCCC------CeEEEEeCCCCceEEeecCCCC-CCcEEEEEcCCCeEEEec--
Confidence 011 1122333 368999987664 5899999876543332 21121 12344444 67777765
Q ss_pred ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 257 SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
..... .|++.+..+.. . ++ .+. ..+ ..|.++.++..++.||+.....+.+..+|++....+
T Consensus 221 ---~~~~~--~I~r~~~dG~~-~--~~-~~~-~~~------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 221 ---WGNTP--RIEASSMDGSG-R--RI-IAD-THL------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 281 (386)
T ss_dssp ---CSSSC--EEEEEETTSCS-C--EE-EEC-SSC------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE
T ss_pred ---cCCCC--EEEEEeCCCCC-c--EE-EEE-CCC------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE
Confidence 21213 34555432221 1 11 111 111 234443333445556666655445677776644333
No 39
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=93.63 E-value=3.6 Score=36.38 Aligned_cols=188 Identities=4% Similarity=-0.010 Sum_probs=98.3
Q ss_pred eCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
.....+.|||..+++....-..... ......+.+.+..+.+-+.+ .....+.+++..++..+.... .. ..
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~-----~~-~~ 162 (383)
T 3ei3_B 93 SKGGDIILWDYDVQNKTSFIQGMGP--GDAITGMKFNQFNTNQLFVS--SIRGATTLRDFSGSVIQVFAK-----TD-SW 162 (383)
T ss_dssp EBTSCEEEEETTSTTCEEEECCCST--TCBEEEEEEETTEEEEEEEE--ETTTEEEEEETTSCEEEEEEC-----CC-CS
T ss_pred cCCCeEEEEeCCCcccceeeecCCc--CCceeEEEeCCCCCCEEEEE--eCCCEEEEEECCCCceEEEec-----cC-CC
Confidence 4566788899888776554332111 11245566666444443333 345678899988766655433 11 00
Q ss_pred CCCCceE--EECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCe-eEEEeecccccCCCCcE
Q 040165 191 ESPPKGC--LFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGC-LSLNVCCSNCVDKTTDF 266 (358)
Q Consensus 191 ~~~~~~v--~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~-L~lv~~~~~~~~~~~~~ 266 (358)
...-.++ .-+|.....+... ..|..+|+..+....+..... ....+.-. +|+ +.+.+. ....+
T Consensus 163 ~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~------~d~~i 229 (383)
T 3ei3_B 163 DYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKA-KVTHAEFNPRCDWLMATSS------VDATV 229 (383)
T ss_dssp SCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSS-CEEEEEECSSCTTEEEEEE------TTSEE
T ss_pred CCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCC-cEEEEEECCCCCCEEEEEe------CCCEE
Confidence 0001111 2245544444443 489999996555444433211 12233333 555 555542 34689
Q ss_pred EEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecC-CCcEEEEEcCcceEEEEECCCCeE
Q 040165 267 ELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTD-GGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 267 ~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
.+|.+..... .-..+..+... .....+++ .. +|+.++.....+.+..||+++.+.
T Consensus 230 ~iwd~~~~~~--~~~~~~~~~~~------~~v~~~~~---s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 230 KLWDLRNIKD--KNSYIAEMPHE------KPVNAAYF---NPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEGGGCCS--TTCEEEEEECS------SCEEEEEE---CTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEeCCCCCc--ccceEEEecCC------CceEEEEE---cCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 9999876321 22233333321 12445555 55 677555544434599999987643
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.30 E-value=3.8 Score=35.73 Aligned_cols=187 Identities=7% Similarity=0.056 Sum_probs=94.3
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCC-CCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSST-DDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~-~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
....+.|||..++....+-..... ......+.+.+.. +.+-+.+ .....+.+++..++.|..+.. .....
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~-----~~~~~ 101 (379)
T 3jrp_A 31 SDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASC--SYDGKVLIWKEENGRWSQIAV-----HAVHS 101 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEE--ETTSCEEEEEEETTEEEEEEE-----ECCCS
T ss_pred CCCcEEEEecCCCcceeeeEecCC--CCcEEEEEeCCCCCCCEEEEe--ccCCEEEEEEcCCCceeEeee-----ecCCC
Confidence 455566777653322222111111 1113445555443 3343333 245678999999998876554 21110
Q ss_pred CCCCceEEEC----ceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCCCC-CceEEEEE--------------CCee
Q 040165 191 ESPPKGCLFN----GALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEACHP-RSVSLGVV--------------GGCL 250 (358)
Q Consensus 191 ~~~~~~v~~~----G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~-~~~~l~~~--------------~g~L 250 (358)
..-.++.+. |.+...+... ..|..+|+.+..- ..+.+..+. ....+.-. +|.+
T Consensus 102 -~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 102 -ASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp -SCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCE
T ss_pred -cceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE
Confidence 111223332 4444444443 4788899887622 222111111 11122221 4666
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCC---CcEEEEEcCcceEEEEEC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDG---GDEIIMINKWREFISCNL 327 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---g~i~~~~~~~~~l~~yd~ 327 (358)
.+++. ....+.+|.+... ...|.....+.... .....+++ ..+ +++++.....+.+..||+
T Consensus 175 l~~~~------~dg~i~i~d~~~~--~~~~~~~~~~~~h~-----~~v~~~~~---sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 175 FVTGG------ADNLVKIWKYNSD--AQTYVLESTLEGHS-----DWVRDVAW---SPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp EEEEE------TTSCEEEEEEETT--TTEEEEEEEECCCS-----SCEEEEEE---CCCCSSSEEEEEEETTSCEEEEEE
T ss_pred EEEEe------CCCeEEEEEecCC--CcceeeEEEEeccc-----CcEeEEEE---CCCCCCCCeEEEEeCCCEEEEEeC
Confidence 66662 3468999999763 25677666665322 12444555 445 665555444335899998
Q ss_pred CCC
Q 040165 328 NER 330 (358)
Q Consensus 328 ~t~ 330 (358)
+++
T Consensus 239 ~~~ 241 (379)
T 3jrp_A 239 DNE 241 (379)
T ss_dssp SST
T ss_pred CCC
Confidence 886
No 41
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.26 E-value=3.7 Score=35.47 Aligned_cols=209 Identities=8% Similarity=-0.035 Sum_probs=104.9
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccc----eEEEEEEcCCCceE
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLR----VLLKVFSMKAFSWR 176 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~----~~~~vyss~t~~W~ 176 (358)
+.+|-+.+.......++++|+.+++...+..... ....++.+|+..+ .- +.. ... ..+.+|+..++.-+
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~dg~-l~-v~~-~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGR-LF-VCY-LGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSC-EE-EEE-CTTSSSCCEEEEECTTSCSCE
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC----CCcceEEECCCCc-EE-EEe-CCCCCCCceEEEEeCCCCEEE
Confidence 4566665542356679999999988776532111 1245566776642 22 221 122 46788888777654
Q ss_pred ec-ccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCe-eE
Q 040165 177 DV-HYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGC-LS 251 (358)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~-L~ 251 (358)
.. .. .... .....+.+ +|.+|+.............|..+|+.++++..+.-... ....++.. +|+ |+
T Consensus 126 ~~~~~-----~~~~--~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 126 DIIED-----LSTA--YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS-VANGIALSTDEKVLW 197 (333)
T ss_dssp EEECS-----SSSC--CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES-SEEEEEECTTSSEEE
T ss_pred EEEcc-----CccC--CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC-cccceEECCCCCEEE
Confidence 22 21 0000 11112222 57776654421110112479999988776655421111 11233333 665 66
Q ss_pred EEeecccccCCCCcEEEEEEccCCCCCceeEEE-EeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 252 LNVCCSNCVDKTTDFELWVMKQYGVHSSWERLT-KIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 252 lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
+.. .....+.+|.++..+ ....... .+... +.+. .....+++ ..+|++++.......+..||++.+
T Consensus 198 v~~------~~~~~i~~~d~~~~g--~~~~~~~~~~~~~-~~~~-~~~~~i~~---d~~G~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 198 VTE------TTANRLHRIALEDDG--VTIQPFGATIPYY-FTGH-EGPDSCCI---DSDDNLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp EEE------GGGTEEEEEEECTTS--SSEEEEEEEEEEE-CCSS-SEEEEEEE---BTTCCEEEEEETTTEEEEECTTSC
T ss_pred EEe------CCCCeEEEEEecCCC--cCcccccceEEEe-cCCC-CCCCceEE---CCCCCEEEEEcCCCEEEEECCCCC
Confidence 654 123567777775422 2222211 11100 0010 11333555 557888887654335999999777
Q ss_pred eEEEeecc
Q 040165 331 TLEEIYRP 338 (358)
Q Consensus 331 ~~~~v~~~ 338 (358)
..+.+ ..
T Consensus 265 ~~~~~-~~ 271 (333)
T 2dg1_A 265 PIGQI-LI 271 (333)
T ss_dssp EEEEE-EC
T ss_pred EEEEE-Ec
Confidence 66666 44
No 42
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=93.21 E-value=4.2 Score=35.97 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=76.2
Q ss_pred ceEEEEEEcCCC--ceEecccc-ccc-ccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCC
Q 040165 162 RVLLKVFSMKAF--SWRDVHYN-LGV-KLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEAC 236 (358)
Q Consensus 162 ~~~~~vyss~t~--~W~~~~~~-~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~ 236 (358)
...+..++..++ .|+..... .+. .+.........++..+|.+|.....+ .+.++|..+++.... +.+.
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g-------~l~~~d~~tG~~~w~~~~~~ 269 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG-------NLTALDLRSGQIMWKRELGS 269 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS-------CEEEEETTTCCEEEEECCCC
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc-------EEEEEECCCCcEEeeccCCC
Confidence 346777887776 58654321 000 00000002245667788888876443 799999987643321 2221
Q ss_pred CCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEE
Q 040165 237 HPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMI 316 (358)
Q Consensus 237 ~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 316 (358)
...+...++.|++.. . ...+..+..++ .+..|... .... .....+... ++.|++..
T Consensus 270 ---~~~~~~~~~~l~~~~-----~--~g~l~~~d~~t--G~~~w~~~---~~~~----~~~~~~~~~-----~~~l~v~~ 325 (376)
T 3q7m_A 270 ---VNDFIVDGNRIYLVD-----Q--NDRVMALTIDG--GVTLWTQS---DLLH----RLLTSPVLY-----NGNLVVGD 325 (376)
T ss_dssp ---EEEEEEETTEEEEEE-----T--TCCEEEEETTT--CCEEEEEC---TTTT----SCCCCCEEE-----TTEEEEEC
T ss_pred ---CCCceEECCEEEEEc-----C--CCeEEEEECCC--CcEEEeec---ccCC----CcccCCEEE-----CCEEEEEe
Confidence 234555688888877 2 23444444433 23456432 0110 011233333 46577766
Q ss_pred cCcceEEEEECCCCeEEEeecc
Q 040165 317 NKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 317 ~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
.+. .++.+|+++++...-...
T Consensus 326 ~~g-~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 326 SEG-YLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp TTS-EEEEEETTTCCEEEEEEC
T ss_pred CCC-eEEEEECCCCcEEEEEec
Confidence 554 499999999987654344
No 43
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.08 E-value=6.1 Score=37.41 Aligned_cols=197 Identities=12% Similarity=0.005 Sum_probs=106.1
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEc--CCCceEec
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSM--KAFSWRDV 178 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss--~t~~W~~~ 178 (358)
+-+|.++........+.|+|+.|++....-+.... ...+.++|..+ |-.+.- ....+.+|+. .+++ .+
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-----~~~v~~spdg~-~l~v~~--~d~~V~v~D~~~~t~~--~~ 215 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-----VHISRMSASGR-YLLVIG--RDARIDMIDLWAKEPT--KV 215 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-----EEEEEECTTSC-EEEEEE--TTSEEEEEETTSSSCE--EE
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-----cceEEECCCCC-EEEEEC--CCCeEEEEECcCCCCc--EE
Confidence 34677666634667899999999876432111111 34556677543 333332 2378999999 5543 22
Q ss_pred ccccccccccccCCCCceE-EE-----Cce-EEEEeecCCCCCCCcEEEEEECCCCee-EEecCC-C--C------C-Cc
Q 040165 179 HYNLGVKLFYGTESPPKGC-LF-----NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEA-C--H------P-RS 240 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v-~~-----~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P-~--~------~-~~ 240 (358)
.. ++.+. ...++ +. +|. +|.-.... ..|..+|..+.+- ..++.+ . + + ..
T Consensus 216 ~~-----i~~g~--~p~~va~sp~~~~dg~~l~v~~~~~------~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 216 AE-----IKIGI--EARSVESSKFKGYEDRYTIAGAYWP------PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp EE-----EECCS--EEEEEEECCSTTCTTTEEEEEEEES------SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred EE-----EecCC--CcceEEeCCCcCCCCCEEEEEEccC------CeEEEEeccccccceeecccCcccCccccccCCce
Confidence 22 22111 11222 22 565 44444332 4789999988655 334543 1 1 1 12
Q ss_pred eEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcC
Q 040165 241 VSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINK 318 (358)
Q Consensus 241 ~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~ 318 (358)
..+... +|..+++. ......+.+|.+++.. -.++.+++.... ..-+++ ..+|+ ++.....
T Consensus 283 ~~i~~s~~~~~~~vs-----~~~~g~i~vvd~~~~~----~l~~~~i~~~~~------~~~~~~---spdg~~l~va~~~ 344 (543)
T 1nir_A 283 AAIIASHEHPEFIVN-----VKETGKVLLVNYKDID----NLTVTSIGAAPF------LHDGGW---DSSHRYFMTAANN 344 (543)
T ss_dssp EEEEECSSSSEEEEE-----ETTTTEEEEEECTTSS----SCEEEEEECCSS------CCCEEE---CTTSCEEEEEEGG
T ss_pred EEEEECCCCCEEEEE-----ECCCCeEEEEEecCCC----cceeEEeccCcC------ccCceE---CCCCCEEEEEecC
Confidence 234444 45555555 2345677777766521 123445553322 334566 56777 5555554
Q ss_pred cceEEEEECCCCeEEEeecc
Q 040165 319 WREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 319 ~~~l~~yd~~t~~~~~v~~~ 338 (358)
.+.+.++|.++++.......
T Consensus 345 ~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 345 SNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp GTEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEECCCCeEEEeecc
Confidence 44699999999987665343
No 44
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.05 E-value=3.4 Score=34.38 Aligned_cols=194 Identities=8% Similarity=0.002 Sum_probs=95.1
Q ss_pred EeecceEEE-EEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEec
Q 040165 100 GSCNGLVCM-ALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDV 178 (358)
Q Consensus 100 ~s~~Gll~~-~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~ 178 (358)
.+.+|-+.+ .......+.++|+-++....++..... ...++.+|+..+ .-| . .....+.+|+..++.-...
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~p~~i~~~~~g~-l~v-~--~~~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY----QPQGLAVDGAGT-VYV-T--DFNNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC----SCCCEEECTTCC-EEE-E--ETTTEEEEECTTCSCCEEC
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC----CcceeEECCCCC-EEE-E--cCCCEEEEEeCCCceEeee
Confidence 334566555 423556788899887776655432211 123455666433 222 2 1245778888776644333
Q ss_pred ccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEee
Q 040165 179 HYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVC 255 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~ 255 (358)
.. .. . ....++.+ +|.+|+..... ..|..+|..+.............-..++.. +|+|++...
T Consensus 103 ~~-----~~--~-~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 103 PF-----DG--L-NYPEGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp CC-----CS--C-SSEEEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred ec-----CC--c-CCCcceEECCCCCEEEEECCC------CEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 21 00 0 11123333 68877765443 478889877665443322111112234443 788877762
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
....+.+|..+. . ... ......+ .....+++ ..+|.|++.....+.+..||++++....+
T Consensus 169 ------~~~~i~~~~~~~--~-~~~----~~~~~~~----~~p~~i~~---d~~g~l~v~~~~~~~v~~~~~~~~~~~~~ 228 (270)
T 1rwi_B 169 ------DNNRVVKLEAES--N-NQV----VLPFTDI----TAPWGIAV---DEAGTVYVTEHNTNQVVKLLAGSTTSTVL 228 (270)
T ss_dssp ------GGTEEEEECTTT--C-CEE----ECCCSSC----CSEEEEEE---CTTCCEEEEETTTSCEEEECTTCSCCEEC
T ss_pred ------CCCEEEEEecCC--C-ceE----eecccCC----CCceEEEE---CCCCCEEEEECCCCcEEEEcCCCCcceee
Confidence 234565554432 1 111 1111111 11334444 55677888876544599999988765544
No 45
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.02 E-value=4 Score=35.11 Aligned_cols=192 Identities=9% Similarity=0.036 Sum_probs=101.2
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce-Eecccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW-RDVHYN 181 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W-~~~~~~ 181 (358)
.+.+.+.......+.++|+.|++....-..+.. .. .+.+++..+ +-.+.- .....+.+++..+++- ....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~-~~~~s~dg~-~l~~~~-~~~~~i~~~d~~~~~~~~~~~-- 79 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYD----FV-DTAITSDCS-NVVVTS-DFCQTLVQIETQLEPPKVVAI-- 79 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCC----EE-EEEECSSSC-EEEEEE-STTCEEEEEECSSSSCEEEEE--
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCC----cc-eEEEcCCCC-EEEEEe-CCCCeEEEEECCCCceeEEec--
Confidence 344444424567889999999887554332211 13 667777654 333222 3456889999988764 1111
Q ss_pred cccccccccCCCCc--eEEECce-EEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCe-eEEEee
Q 040165 182 LGVKLFYGTESPPK--GCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGC-LSLNVC 255 (358)
Q Consensus 182 ~~~~~~~~~~~~~~--~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~-L~lv~~ 255 (358)
.... .... .+.-+|. +| ...... ....|..+|+.+.+... ++... ....++.. +|+ |++..
T Consensus 80 -----~~~~-~~~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~- 146 (331)
T 3u4y_A 80 -----QEGQ-SSMADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILID- 146 (331)
T ss_dssp -----EECS-SCCCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEE-
T ss_pred -----ccCC-CCccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEe-
Confidence 1111 1122 2223455 44 333220 01289999998876533 33321 12334443 676 55554
Q ss_pred cccccCCCCc-EEEEEEccCCCCCceeE-EEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeE
Q 040165 256 CSNCVDKTTD-FELWVMKQYGVHSSWER-LTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 256 ~~~~~~~~~~-~~vW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~ 332 (358)
. .... +.+|.++..+ ..... ...+.. ......+++ ..+|+ +++.......+..||+++++.
T Consensus 147 ----~-~~~~~i~~~~~~~~g--~~~~~~~~~~~~------~~~~~~~~~---spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 147 ----R-SSANTVRRFKIDADG--VLFDTGQEFISG------GTRPFNITF---TPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ----E-TTTTEEEEEEECTTC--CEEEEEEEEECS------SSSEEEEEE---CTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ----c-CCCceEEEEEECCCC--cEeecCCccccC------CCCccceEE---CCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 2 3345 9999998632 11111 111211 111344555 56777 777665544699999998874
No 46
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=92.91 E-value=4.1 Score=34.98 Aligned_cols=203 Identities=8% Similarity=-0.041 Sum_probs=101.4
Q ss_pred Eeecce-EEEEEeCCceEEEEcc---cccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCC-Cc
Q 040165 100 GSCNGL-VCMALHGCKDFFIYNP---STRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKA-FS 174 (358)
Q Consensus 100 ~s~~Gl-l~~~~~~~~~~~V~NP---~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t-~~ 174 (358)
-+.+|- +++.......+.+++. .+++....-..... ...+.+++..+ +-++.- .....+.+|+..+ ++
T Consensus 91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~-~l~~~~-~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG-----CHSANISPDNR-TLWVPA-LKQDRICLFTVSDDGH 163 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT-----BCCCEECTTSS-EEEEEE-GGGTEEEEEEECTTSC
T ss_pred EcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCC-----ceEEEECCCCC-EEEEec-CCCCEEEEEEecCCCc
Confidence 344443 3333123566888877 33333222111111 22344556543 333322 3456799999887 76
Q ss_pred eEecc--cccccccccccCCCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECC--CCeeEE---e-cCCC--CC-Cc
Q 040165 175 WRDVH--YNLGVKLFYGTESPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLA--EEKFCR---V-GEAC--HP-RS 240 (358)
Q Consensus 175 W~~~~--~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~--~~~~~~---i-~~P~--~~-~~ 240 (358)
..... . ...........+.+ +|. +|...... ..+..||+. +.++.. + .+|. .. ..
T Consensus 164 ~~~~~~~~-----~~~~~~~~~~~~~~~pdg~~l~~~~~~~------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 164 LVAQDPAE-----VTTVEGAGPRHMVFHPNEQYAYCVNELN------SSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp EEEEEEEE-----EECSTTCCEEEEEECTTSSEEEEEETTT------TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred eeeecccc-----cccCCCCCcceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 65433 1 11000011112323 565 55544332 478899984 444432 2 2442 11 11
Q ss_pred -eEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEc
Q 040165 241 -VSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMIN 317 (358)
Q Consensus 241 -~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~ 317 (358)
..+... +|+..++. ......+.+|.++..+ +.+..+..++.... ...+++ ..+|+ |++...
T Consensus 233 ~~~i~~s~dg~~l~v~-----~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~------~~~~~~---s~dg~~l~~~~~ 296 (343)
T 1ri6_A 233 AADIHITPDGRHLYAC-----DRTASLITVFSVSEDG--SVLSKEGFQPTETQ------PRGFNV---DHSGKYLIAAGQ 296 (343)
T ss_dssp EEEEEECTTSSEEEEE-----ETTTTEEEEEEECTTS--CCEEEEEEEECSSS------CCCEEE---CTTSSEEEEECT
T ss_pred ccceEECCCCCEEEEE-----ecCCCEEEEEEEcCCC--CceEEeeeecCCCc------cceEEE---CCCCCEEEEecC
Confidence 234443 56544444 1235689999998522 46777777765331 334555 56677 555543
Q ss_pred CcceEEEE--ECCCCeEEEee
Q 040165 318 KWREFISC--NLNERTLEEIY 336 (358)
Q Consensus 318 ~~~~l~~y--d~~t~~~~~v~ 336 (358)
..+.+..| |+++++++.+-
T Consensus 297 ~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 297 KSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp TTCEEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEEcCCCceeeEcc
Confidence 33346666 88899888773
No 47
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=92.86 E-value=3.8 Score=34.51 Aligned_cols=201 Identities=10% Similarity=0.102 Sum_probs=103.4
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCC-CceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGS-PYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~-~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
+.+|-+.+.......+.++|+..+....++........ ....++.+++..+..-|... .....+.+|+.....-+...
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~-~~~~~i~~~d~~g~~~~~~~ 116 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQIYNQYGQFVRKFG 116 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEEECTTSCEEEEEC
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcC-CCCCEEEEECCCCcEEEEec
Confidence 34566655523456788899886555555432211111 12445666544443322221 12567888884433322222
Q ss_pred cccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCC-CCceEEEEE-CCeeEEEee
Q 040165 180 YNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACH-PRSVSLGVV-GGCLSLNVC 255 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~-~~~~~l~~~-~g~L~lv~~ 255 (358)
. .. . ....++.+ +|.+|+..... ..|..||...+....+..+.. .....++.. +|+|++..
T Consensus 117 ~-----~~--~-~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~- 181 (286)
T 1q7f_A 117 A-----TI--L-QHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD- 181 (286)
T ss_dssp T-----TT--C-SCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEE-
T ss_pred C-----cc--C-CCceEEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEE-
Confidence 1 00 0 11123333 68877655432 489999987766655543311 112344544 78887776
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcc-eEEEEECCCCeEEE
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWR-EFISCNLNERTLEE 334 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~l~~yd~~t~~~~~ 334 (358)
. ....+.+|..+. .. +..+.... .......+++ ..+|++++.....+ .+..||.+.+..+.
T Consensus 182 ----~-~~~~i~~~~~~g-----~~--~~~~~~~g---~~~~p~~i~~---d~~G~l~v~~~~~~~~i~~~~~~g~~~~~ 243 (286)
T 1q7f_A 182 ----N-RAHCVKVFNYEG-----QY--LRQIGGEG---ITNYPIGVGI---NSNGEILIADNHNNFNLTIFTQDGQLISA 243 (286)
T ss_dssp ----G-GGTEEEEEETTC-----CE--EEEESCTT---TSCSEEEEEE---CTTCCEEEEECSSSCEEEEECTTSCEEEE
T ss_pred ----C-CCCEEEEEcCCC-----CE--EEEEccCC---ccCCCcEEEE---CCCCCEEEEeCCCCEEEEEECCCCCEEEE
Confidence 2 235677775432 22 22332211 0111333444 55778888876543 59999988777666
Q ss_pred e
Q 040165 335 I 335 (358)
Q Consensus 335 v 335 (358)
+
T Consensus 244 ~ 244 (286)
T 1q7f_A 244 L 244 (286)
T ss_dssp E
T ss_pred E
Confidence 6
No 48
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=92.61 E-value=5.2 Score=35.41 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=96.5
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNL 182 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~ 182 (358)
.+.|++. ....+..+++.+.....+.... ....++.+|+..+...++- .....+..++..++.-+.+..
T Consensus 44 ~~~ll~~--~~~~I~~i~~~g~~~~~~~~~~-----~~~~~l~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~-- 112 (349)
T 3v64_C 44 EPVLLFA--NRIDIRQVLPHRSEYTLLLNNL-----ENAIALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVS-- 112 (349)
T ss_dssp CCEEEEE--CBSCEEEECTTSCCEEEEECSC-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEC--
T ss_pred CceeEee--cccceEEEeCCCCeeEEeecCC-----CceEEEEEeccccEEEEEe--ccCCceEEEecCCCCceEEEe--
Confidence 4555554 4445666777665544432211 1156788888766433322 234567777776655433321
Q ss_pred ccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEeec
Q 040165 183 GVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNVCC 256 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~~~ 256 (358)
... ....++.+ +|.|||..... ..|..+|+....-..+ ...... -..+++. +|.||...
T Consensus 113 -----~~~-~~p~glavd~~~g~ly~~d~~~------~~I~~~~~dG~~~~~l~~~~l~~-P~~iavdp~~g~ly~td-- 177 (349)
T 3v64_C 113 -----TGL-ESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLLWQSLEK-PRAIALHPMEGTIYWTD-- 177 (349)
T ss_dssp -----SSC-SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSCSCEEEECTTCSC-EEEEEEETTTTEEEEEE--
T ss_pred -----CCC-CCccEEEEecCCCeEEEEcCCC------CeEEEEcCCCCceEEEEeCCCCC-cceEEEecCcCeEEEec--
Confidence 111 11233333 68999987664 5899999886543333 211211 2344544 67777776
Q ss_pred ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 257 SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
...... |++.+..+... + .+-... ...|.++..+..++.||+.....+.+..+|++....+.+
T Consensus 178 ---~~~~~~--I~r~~~dG~~~---~--~~~~~~------~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 178 ---WGNTPR--IEASSMDGSGR---R--IIADTH------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp ---CSSSCE--EEEEETTSCSC---E--ESCCSS------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ---cCCCCE--EEEEeCCCCCc---E--EEEECC------CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 212133 44444322210 1 110011 134444433445666777765555677777775444433
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=92.60 E-value=5 Score=35.21 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=84.6
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~~~~~ 190 (358)
....+.|||..++.+..+-..... ......+.+.+.. ++-+.+ .....+.+|+..++. |..... +.. .
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~-~~l~s~--s~d~~v~vwd~~~~~~~~~~~~-----~~~-~ 99 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKS-NRIVTC--SQDRNAYVYEKRPDGTWKQTLV-----LLR-L 99 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCC--SSCEEEEEECTTT-CCEEEE--ETTSSEEEC------CCCCEEE-----CCC-C
T ss_pred CCCEEEEEEccCCceEEEEEEecC--CceEEEEEEeCCC-CEEEEE--eCCCeEEEEEcCCCCceeeeeE-----ecc-c
Confidence 456677888888754443333211 1124556666653 333333 245678888888876 544332 110 0
Q ss_pred CCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCe----eEEecCCCCCCceEEEEE-CCeeEEEeecccccCCC
Q 040165 191 ESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEK----FCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKT 263 (358)
Q Consensus 191 ~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~----~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~ 263 (358)
...-.++.+ +|.....+... ..|..+|+.+++ ...+..|.......+.-. +|++.+.+. ..
T Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~d 167 (377)
T 3dwl_C 100 NRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC------AD 167 (377)
T ss_dssp SSCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE------SS
T ss_pred CCceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe------CC
Confidence 001111222 34433333332 367788888764 233333321122333333 666555552 34
Q ss_pred CcEEEEEEccCCC-----CCceeEE---EEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 264 TDFELWVMKQYGV-----HSSWERL---TKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 264 ~~~~vW~l~~~~~-----~~~W~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
..+.+|.++..+. ...|... ..+-. .+ .+......+++ ..+|+.++.....+.+..||+++++.
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~---sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA-EY-PSGGWVHAVGF---SPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-CC-CCSSSEEEEEE---CTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhh-cc-cCCceEEEEEE---CCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 6799999863211 1122211 11100 01 22223455555 55677554443333599999988764
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.14 E-value=6.6 Score=35.56 Aligned_cols=196 Identities=8% Similarity=0.055 Sum_probs=94.0
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNL 182 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~ 182 (358)
++-++.....++.+.|||..+++...+-..... . .....+.+.|..+.+-+.+ .....+.+++.+++.-+.....
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH-~-~~V~~l~f~p~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~- 205 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA-G-GSITGLKFNPLNTNQFYAS--SMEGTTRLQDFKGNILRVFASS- 205 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS-S-CCCCEEEECSSCTTEEEEE--CSSSCEEEEETTSCEEEEEECC-
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC-C-CCEEEEEEeCCCCCEEEEE--eCCCEEEEeeccCCceeEEecc-
Confidence 443333324677889999988765443222111 1 1134556777655544333 3456788888887765544320
Q ss_pred ccccccccCCCCceE--EECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEE-CCeeEEEeeccc
Q 040165 183 GVKLFYGTESPPKGC--LFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVV-GGCLSLNVCCSN 258 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~-~g~L~lv~~~~~ 258 (358)
. .......++ .-+|.+...+... ..|..+|+.++....+ ..+. ....+.-. +|.-.++++
T Consensus 206 ----~-~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~s~--- 269 (435)
T 4e54_B 206 ----D-TINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNL--RMHKKKVTHVALNPCCDWFLATA--- 269 (435)
T ss_dssp ----S-SCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCS--BCCSSCEEEEEECTTCSSEEEEE---
T ss_pred ----C-CCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEE--ecccceEEeeeecCCCceEEEEe---
Confidence 0 000111222 2255555444432 4788889876533222 2222 12223332 454334332
Q ss_pred ccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 259 CVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 259 ~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
.....+.+|.+......... ....++......+++ ..+|..++.....+.+..||+++...
T Consensus 270 --s~d~~v~iwd~~~~~~~~~~--------~~~~~h~~~v~~~~~---spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 270 --SVDQTVKIWDLRQVRGKASF--------LYSLPHRHPVNAACF---SPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp --ETTSBCCEEETTTCCSSSCC--------SBCCBCSSCEEECCB---CTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred --cCcceeeEEecccccccceE--------EEeeeccccccceeE---CCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 13467889988653211111 001111122333344 45666555444333588899887543
No 51
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=92.06 E-value=4.6 Score=33.53 Aligned_cols=189 Identities=9% Similarity=0.057 Sum_probs=99.9
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
..+|-+.+. +....++++|+.++....++.... ....++.+|+.. . +.........+.+|+.++........
T Consensus 75 ~~~g~l~v~-~~~~~i~~~d~~~~~~~~~~~~~~----~~p~~i~~~~~g-~--l~v~~~~~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 75 DGAGTVYVT-DFNNRVVTLAAGSNNQTVLPFDGL----NYPEGLAVDTQG-A--VYVADRGNNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp CTTCCEEEE-ETTTEEEEECTTCSCCEECCCCSC----SSEEEEEECTTC-C--EEEEEGGGTEEEEECTTCCSCEECCC
T ss_pred CCCCCEEEE-cCCCEEEEEeCCCceEeeeecCCc----CCCcceEECCCC-C--EEEEECCCCEEEEEECCCceeEeecc
Confidence 345666555 346678899998877665543221 124566777743 2 22221334567777665554332211
Q ss_pred ccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecc
Q 040165 181 NLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCS 257 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~ 257 (358)
. .. ....++.+ +|.+|+..... ..|..||..+................++.. +|.|++..
T Consensus 147 -----~--~~-~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~--- 209 (270)
T 1rwi_B 147 -----T--GL-NDPDGVAVDNSGNVYVTDTDN------NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE--- 209 (270)
T ss_dssp -----C--SC-CSCCCEEECTTCCEEEEEGGG------TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE---
T ss_pred -----c--cC-CCceeEEEeCCCCEEEEECCC------CEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEE---
Confidence 0 00 11223333 58877766543 489999998876544322211112344544 67888877
Q ss_pred cccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 258 NCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 258 ~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
. ....+.+|..+. . .... +....+ .....+++ ..+|+|++.....+.+..|++...+
T Consensus 210 --~-~~~~v~~~~~~~--~-~~~~----~~~~~~----~~p~~i~~---~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 210 --H-NTNQVVKLLAGS--T-TSTV----LPFTGL----NTPLAVAV---DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp --T-TTSCEEEECTTC--S-CCEE----CCCCSC----SCEEEEEE---CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred --C-CCCcEEEEcCCC--C-ccee----eccCCC----CCceeEEE---CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 2 234566665432 1 1111 111111 11334444 5567888887766679999887654
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=92.03 E-value=5.7 Score=34.57 Aligned_cols=199 Identities=8% Similarity=0.062 Sum_probs=99.5
Q ss_pred ceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCC-CCeEEEEEEccceEEEEEEcCCCce-Eecccc
Q 040165 104 GLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSST-DDYKVLAVSCLRVLLKVFSMKAFSW-RDVHYN 181 (358)
Q Consensus 104 Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~-~~ykvv~~~~~~~~~~vyss~t~~W-~~~~~~ 181 (358)
|-+++....+..+.|||..++++..+-..... ......+.+.+.. +.+-+++ .....+.+|+..++.- .....
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~- 143 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVA--SSDGKVSVVEFKENGTTSPIII- 143 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEE--ETTSEEEEEECCTTSCCCEEEE-
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCC--CcceEEEEeCCCCCCCEEEEe--cCCCcEEEEecCCCCceeeEEe-
Confidence 44444434667888999888864433222211 1124556666663 3443333 3566788999887632 11110
Q ss_pred cccccccccCCCCceEEE---------------CceEEEEeecCCCCCCCcEEEEEECCCCe--eEEe-cCCCCC-CceE
Q 040165 182 LGVKLFYGTESPPKGCLF---------------NGALHWLVSGFHFGSQDPVIIAFDLAEEK--FCRV-GEACHP-RSVS 242 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~---------------~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i-~~P~~~-~~~~ 242 (358)
.. ....-.++.+ +|.+...+... ..|..||+.+.. +..+ .+..+. ....
T Consensus 144 -----~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 144 -----DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp -----EC-CTTCEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred -----cC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence 00 0000011111 45555555443 368888876543 4333 233222 2233
Q ss_pred EEEE-C---CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEE-EEEc
Q 040165 243 LGVV-G---GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEI-IMIN 317 (358)
Q Consensus 243 l~~~-~---g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~-~~~~ 317 (358)
+.-. + |.+.+.+. ....+.+|.++... ..+.. ..+.... .......+++ ..+|+.+ ....
T Consensus 212 ~~~sp~~~~~~~l~s~~------~dg~i~iwd~~~~~--~~~~~-~~~~~~~---~~~~v~~~~~---s~~g~~l~~~~~ 276 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVS------QDRTCIIWTQDNEQ--GPWKK-TLLKEEK---FPDVLWRASW---SLSGNVLALSGG 276 (379)
T ss_dssp EEECCCCSSSEEEEEEE------TTSCEEEEEESSTT--SCCEE-EESSSSC---CSSCEEEEEE---CSSSCCEEEEES
T ss_pred EEECCCCCCCCeEEEEe------CCCEEEEEeCCCCC--cccee-eeecccc---CCCcEEEEEE---cCCCCEEEEecC
Confidence 3333 4 66666652 34679999998632 22322 2222111 1122444555 5667744 4444
Q ss_pred CcceEEEEECC-CCeEEEe
Q 040165 318 KWREFISCNLN-ERTLEEI 335 (358)
Q Consensus 318 ~~~~l~~yd~~-t~~~~~v 335 (358)
+. .+..||++ .++|+.+
T Consensus 277 dg-~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 277 DN-KVTLWKENLEGKWEPA 294 (379)
T ss_dssp SS-SEEEEEEEETTEEEEE
T ss_pred CC-cEEEEeCCCCCccccc
Confidence 44 49999988 5577766
No 53
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.84 E-value=5.1 Score=33.64 Aligned_cols=195 Identities=12% Similarity=0.029 Sum_probs=103.2
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
+....+|-+.+.......+.++||. ++...++.+.. .....++..|+... .-+ . ......+..|+.. ++++.
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~-l~v-~-~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGD-IWF-T-ENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSC-EEE-E-ETTTTEEEEECTT-SCEEE
T ss_pred eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCC-EEE-E-ecCCCeEEEECCC-CCeEE
Confidence 3444567666652346778899988 66665433211 11245566665432 222 1 1234567788877 66654
Q ss_pred cccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCC-CCCceEEEE-ECCeeEEE
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEAC-HPRSVSLGV-VGGCLSLN 253 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~-~~~~~~l~~-~~g~L~lv 253 (358)
... +... ....++.+ +|.+|+..... ..|..+|+. ++...+.+|. ......++. .+|+|++.
T Consensus 97 ~~~------~~~~-~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 97 YPL------PQPD-SGPYGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp EEC------SSTT-CCEEEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred ecC------CCCC-CCCccceECCCCCEEEEccCC------CeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEE
Confidence 432 1111 11223333 57877665432 489999998 7776665662 222334444 37888777
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
. . .... |+.++.. .+... ..++.. ......+++ ..+|+|++.......+..||+ ++++.
T Consensus 163 ~-----~-~~~~--i~~~~~~---g~~~~-~~~~~~-----~~~~~~i~~---d~~g~l~v~~~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 163 E-----N-QNNS--IGRITNT---GKLEE-YPLPTN-----AAAPVGITS---GNDGALWFVEIMGNKIGRITT-TGEIS 221 (300)
T ss_dssp E-----T-TTTE--EEEECTT---CCEEE-EECSST-----TCCEEEEEE---CTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred e-----c-CCCe--EEEECCC---CcEEE-eeCCCC-----CCCcceEEE---CCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence 6 2 2233 4555441 33432 122111 111233444 446778888765445999999 66666
Q ss_pred Ee
Q 040165 334 EI 335 (358)
Q Consensus 334 ~v 335 (358)
.+
T Consensus 222 ~~ 223 (300)
T 2qc5_A 222 EY 223 (300)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 54
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.72 E-value=5.8 Score=34.02 Aligned_cols=192 Identities=11% Similarity=0.002 Sum_probs=97.1
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceE-EEEEEcCCCc-eEecccccccccccccCC
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVL-LKVFSMKAFS-WRDVHYNLGVKLFYGTES 192 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~-~~vyss~t~~-W~~~~~~~~~~~~~~~~~ 192 (358)
.+.++|+.+++....-+... ....+.++|..+. -++.- ..... +.+|+...+. -..... ...+.. .
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~-----~~~~~~~spdg~~-l~~~~-~~~~~~i~~~~~~~~g~~~~~~~---~~~~~~--~ 176 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPY-----DAVGIAISPNGNG-LILID-RSSANTVRRFKIDADGVLFDTGQ---EFISGG--T 176 (331)
T ss_dssp EEEEEETTTTEEEEEEECCT-----TEEEEEECTTSSC-EEEEE-ETTTTEEEEEEECTTCCEEEEEE---EEECSS--S
T ss_pred cEEEEECCCCCeEEEEECCC-----CccceEECCCCCE-EEEEe-cCCCceEEEEEECCCCcEeecCC---ccccCC--C
Confidence 89999999887655322211 1345677776543 22222 22234 7888876432 111101 001110 1
Q ss_pred CCceEE--ECce-EEEEeecCCCCCCCcEEEEEECCCCee----EEecCCCCCCceEEEEE-CCeeEEEeecccccCCCC
Q 040165 193 PPKGCL--FNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKF----CRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTT 264 (358)
Q Consensus 193 ~~~~v~--~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~----~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~ 264 (358)
....+. -+|. +|...... ..|..+|+.+.+. ..++.. .....++.. +|+..++. .....
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~------~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~-----~~~~~ 243 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIG------NSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVL-----TESTV 243 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTT------TEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEE-----CSSEE
T ss_pred CccceEECCCCCEEEEEeCCC------CeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEE-----EcCCC
Confidence 112222 3576 55544332 4899999987764 223322 111233333 77744444 12234
Q ss_pred cEEEEEEccCCCCCceeEEEEeecCCc--cccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 265 DFELWVMKQYGVHSSWERLTKIDNDIM--VRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 265 ~~~vW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
.+.+|.++. +....+..+..... .........+++ ..+|+ +++...+.+.+..||++++....+..+
T Consensus 244 ~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 244 DVFNFNQLS----GTLSFVKSFGHGLLIDPRPLFGANQMAL---NKTETKLFISANISRELKVFTISGKVVGYVAGI 313 (331)
T ss_dssp EEEEEETTT----TEEEEEEEEECCCCCCCGGGTTCCCEEE---CTTSSEEEEEETTTTEEEEEETTSCEEEECTTC
T ss_pred EEEEEECCC----CceeeecccccccccCCCCcccccceEE---CCCCCEEEEecCCCCcEEEEEecCCcccceecc
Confidence 577776654 34444555443211 111011133566 66777 666666555699999999998887433
No 55
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=91.70 E-value=5.3 Score=33.53 Aligned_cols=195 Identities=11% Similarity=0.005 Sum_probs=101.7
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
+....+|-+.+.......+.++||. ++....+.+... ....++.+|+... .-+ . ......+..|+.. ++.+.
T Consensus 20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~---~~~~~i~~~~~g~-l~v-~-~~~~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPD---AKVMCLTISSDGE-VWF-T-ENAANKIGRITKK-GIIKE 91 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTT---CCEEEEEECTTSC-EEE-E-ETTTTEEEEECTT-SCEEE
T ss_pred eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCccc---CceeeEEECCCCC-EEE-e-CCCCCeEEEECCC-CcEEE
Confidence 3344567666652235678899998 776655432111 1245566676432 221 1 1223457777765 44444
Q ss_pred cccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCC-CCceEEEEE-CCeeEEE
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACH-PRSVSLGVV-GGCLSLN 253 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~-~~~~~l~~~-~g~L~lv 253 (358)
... +... ....++.. +|.+|+..... ..|..+|+ +.+...+..|.. .....++.. +|+|++.
T Consensus 92 ~~~------~~~~-~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 92 YTL------PNPD-SAPYGITEGPNGDIWFTEMNG------NRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp EEC------SSTT-CCEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred EeC------CCcC-CCceeeEECCCCCEEEEecCC------ceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEE
Confidence 332 1111 11223333 57777655432 48999999 667766655522 123344444 7888877
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
. . ....+ +.++.. ++.... .++.. ......+++ ..+|++++.......+..||+ +++++
T Consensus 158 ~-----~-~~~~i--~~~~~~---g~~~~~-~~~~~-----~~~~~~i~~---~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 158 E-----N-QNNAI--GRITES---GDITEF-KIPTP-----ASGPVGITK---GNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp E-----T-TTTEE--EEECTT---CCEEEE-ECSST-----TCCEEEEEE---CTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred e-----C-CCCEE--EEEcCC---CcEEEe-eCCCC-----CCcceeEEE---CCCCCEEEEccCCceEEEECC-CCcEE
Confidence 6 2 22344 444431 333321 12111 111233444 456778887754445999999 77777
Q ss_pred Ee
Q 040165 334 EI 335 (358)
Q Consensus 334 ~v 335 (358)
.+
T Consensus 217 ~~ 218 (299)
T 2z2n_A 217 EF 218 (299)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 56
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.67 E-value=2.4 Score=36.16 Aligned_cols=110 Identities=9% Similarity=-0.112 Sum_probs=66.6
Q ss_pred EECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCC
Q 040165 198 LFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGV 276 (358)
Q Consensus 198 ~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~ 276 (358)
+.+|.||.-++.. ..|..+|+.+++- ..+ +|.......++..+++|++++ . ... .+|+.|.
T Consensus 62 ~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~lt-----w-~~~--~v~V~D~--- 123 (268)
T 3nok_A 62 FHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLT-----W-TEG--LLFTWSG--- 123 (268)
T ss_dssp EETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEE-----S-SSC--EEEEEET---
T ss_pred EECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEE-----c-cCC--EEEEEEC---
Confidence 4567777766654 3699999998876 335 553212234666789999987 2 233 3466654
Q ss_pred CCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 277 HSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 277 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
.+-.++.+++...- -..++. +|+ ++... +...+..+|++|.+...-..+
T Consensus 124 -~Tl~~~~ti~~~~e------GwGLt~-----Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 124 -MPPQRERTTRYSGE------GWGLCY-----WNGKLVRSD-GGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp -TTTEEEEEEECSSC------CCCEEE-----ETTEEEEEC-SSSEEEEECTTTCCEEEEEEC
T ss_pred -CcCcEEEEEeCCCc------eeEEec-----CCCEEEEEC-CCCEEEEEcCCCCeEEEEEEe
Confidence 35567778876421 122222 345 55554 444699999999766442244
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.57 E-value=7.5 Score=34.98 Aligned_cols=199 Identities=10% Similarity=0.066 Sum_probs=102.9
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
|.+++|... -+..++|||..|++...+-..... ......+.+.+. +++-+++ .....+.+++..+++-.....
T Consensus 114 S~~n~lAvg--ld~tV~lWd~~tg~~~~~~~~~~~--~~~V~sv~fspd-g~~lasg--s~Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 114 SSGNVLAVA--LDNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKE-GNYLAVG--TSSAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp CTTSEEEEE--ETTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTT-SSEEEEE--ETTSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEE--eCCEEEEEECCCCCEEEEEEecCC--CCcEEEEEECCC-CCEEEEE--ECCCeEEEEEcCCCcEEEEEe
Confidence 456666554 467899999999988765443221 112445666664 4454444 356678999988874321111
Q ss_pred ccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEE-CCeeEEEeeccc
Q 040165 181 NLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVV-GGCLSLNVCCSN 258 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~-~g~L~lv~~~~~ 258 (358)
.....-.++..+|.+-..+... ..+..+|..........+..+. ....+... +|+..+.++
T Consensus 187 --------~h~~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~--- 249 (420)
T 4gga_A 187 --------SHSARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG--- 249 (420)
T ss_dssp --------CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---
T ss_pred --------CCCCceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee---
Confidence 0111123455667655544443 4788888776554433333211 12223332 566555542
Q ss_pred ccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc--CcceEEEEECCCCeEEEe
Q 040165 259 CVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN--KWREFISCNLNERTLEEI 335 (358)
Q Consensus 259 ~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~l~~yd~~t~~~~~v 335 (358)
....+.+|...... ..+......... ......+++ ...++.++.... ..+.+..+|+++++....
T Consensus 250 ---~D~~v~i~~~~~~~--~~~~~~~~~~~~-----~~~V~~~~~--~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 250 ---NDNLVNVWPSAPGE--GGWVPLQTFTQH-----QGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp ---TTSCEEEEESSCCS--SCSCCSEEECCC-----SSCEEEEEE--CTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred ---ccccceEEeecccc--ccceeeeeeccc-----CCceeeeee--CCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 34578899876532 222222222211 111333333 244444554332 122588888888766554
No 58
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=91.35 E-value=5.8 Score=33.27 Aligned_cols=164 Identities=12% Similarity=-0.046 Sum_probs=94.8
Q ss_pred ceEEEeEeCCCCCeEEEEEE---ccceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCC
Q 040165 140 YLYGFGYDSSTDDYKVLAVS---CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQD 216 (358)
Q Consensus 140 ~~~~~~~d~~~~~ykvv~~~---~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~ 216 (358)
+..++.||. + .+..+ .....+.+++..+++=...-. ++... ........++.+|.+....
T Consensus 22 ftqGL~~~~--~---~LyestG~~g~S~v~~vD~~tgkv~~~~~-----l~~~~-fgeGi~~~~~~ly~ltw~~------ 84 (243)
T 3mbr_X 22 FTEGLFYLR--G---HLYESTGETGRSSVRKVDLETGRILQRAE-----VPPPY-FGAGIVAWRDRLIQLTWRN------ 84 (243)
T ss_dssp CEEEEEEET--T---EEEEEECCTTSCEEEEEETTTCCEEEEEE-----CCTTC-CEEEEEEETTEEEEEESSS------
T ss_pred ccccEEEEC--C---EEEEECCCCCCceEEEEECCCCCEEEEEe-----CCCCc-ceeEEEEeCCEEEEEEeeC------
Confidence 466777876 2 12222 234689999999985432221 22211 1123346788999997664
Q ss_pred cEEEEEECCCCee-EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccC
Q 040165 217 PVIIAFDLAEEKF-CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYH 295 (358)
Q Consensus 217 ~~i~~fD~~~~~~-~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~ 295 (358)
..+..||..+.+- ..++.|.. -..|+.-+++|++.. ... .|+.+|. +.=..+.+|....-....
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~--Gwglt~dg~~L~vSd-------gs~--~l~~iDp----~t~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGE--GWALTSDDSHLYMSD-------GTA--VIRKLDP----DTLQQVGSIKVTAGGRPL 149 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSC--CCEEEECSSCEEEEC-------SSS--EEEEECT----TTCCEEEEEECEETTEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCC--ceEEeeCCCEEEEEC-------CCC--eEEEEeC----CCCeEEEEEEEccCCccc
Confidence 5899999988655 44566632 234555566666654 123 3677765 233455666653211111
Q ss_pred ceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 296 GSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 296 ~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
....-+.. .+|+||......+.+...|++|++.....++.
T Consensus 150 ~~lNeLe~----~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 150 DNLNELEW----VNGELLANVWLTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp CCEEEEEE----ETTEEEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred ccceeeEE----eCCEEEEEECCCCeEEEEECCCCCEEEEEECC
Confidence 11222332 26778877755556999999999986654654
No 59
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=91.25 E-value=6.5 Score=33.67 Aligned_cols=139 Identities=11% Similarity=0.054 Sum_probs=65.8
Q ss_pred cceEEEEEEcCCCceEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCC
Q 040165 161 LRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACH 237 (358)
Q Consensus 161 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~ 237 (358)
....+.+|+..+++-..... . ....-.++.+ +|.+...+... ..|..+|+.+.+-... ...
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~-----~---h~~~v~~~~~s~~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~-- 256 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHI-----G---HTGYLNTVTVSPDGSLCASGGKD------GQAMLWDLNEGKHLYTLDGG-- 256 (340)
T ss_dssp TTSCEEEEETTTTEEEEEEC-----C---CSSCEEEEEECTTSSEEEEEETT------CEEEEEETTTTEEEEEEECS--
T ss_pred CCCEEEEEECCCCceeeEec-----C---CCCcEEEEEECCCCCEEEEEeCC------CeEEEEEeccCceeeeecCC--
Confidence 44567888887765432211 0 0001112222 45544444432 4788899887654221 211
Q ss_pred CCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC----ccccCceeeEEEEeeecCCCcE
Q 040165 238 PRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI----MVRYHGSLVTLCTATGTDGGDE 312 (358)
Q Consensus 238 ~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~g~i 312 (358)
.....+... ++.+...+ ....+.+|.++.. ..+..+.... ...+......+++ ..+|+.
T Consensus 257 ~~v~~~~~~~~~~~~~~~-------~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~h~~~v~~l~~---s~dg~~ 320 (340)
T 4aow_A 257 DIINALCFSPNRYWLCAA-------TGPSIKIWDLEGK------IIVDELKQEVISTSSKAEPPQCTSLAW---SADGQT 320 (340)
T ss_dssp SCEEEEEECSSSSEEEEE-------ETTEEEEEETTTT------EEEEEECCC-------CCCCCEEEEEE---CTTSSE
T ss_pred ceEEeeecCCCCceeecc-------CCCEEEEEECCCC------eEEEeccccceeeeccCCCCCEEEEEE---CCCCCE
Confidence 112223333 34433333 2357888977641 1222222111 1112223455566 667886
Q ss_pred EEEEcCcceEEEEECCCCe
Q 040165 313 IIMINKWREFISCNLNERT 331 (358)
Q Consensus 313 ~~~~~~~~~l~~yd~~t~~ 331 (358)
++.....+.+..||++|++
T Consensus 321 l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTSCEEEEEEEC--
T ss_pred EEEEeCCCEEEEEeCCCcC
Confidence 6665444469999999875
No 60
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=91.19 E-value=4.6 Score=36.51 Aligned_cols=116 Identities=13% Similarity=0.018 Sum_probs=70.9
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cC---------C-C-CCCceEEEE--ECCeeEEEeeccc-ccCCCC
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GE---------A-C-HPRSVSLGV--VGGCLSLNVCCSN-CVDKTT 264 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~---------P-~-~~~~~~l~~--~~g~L~lv~~~~~-~~~~~~ 264 (358)
+|.++|.+..+ .+.++|+.++.-..+ +. + . .+....++. -+++||+...... ......
T Consensus 237 dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 237 AGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp TTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred CCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence 78898977754 799999987754333 11 1 0 011122333 3677888763211 011233
Q ss_pred cEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEE-EcCcceEEEEECCCCeEEEe
Q 040165 265 DFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIM-INKWREFISCNLNERTLEEI 335 (358)
Q Consensus 265 ~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~-~~~~~~l~~yd~~t~~~~~v 335 (358)
.=+||++|- ..+..+.+|++..- ...+++ ..+|+ .++. ....+.+.+||..|++..+-
T Consensus 310 ~~~V~viD~----~t~kv~~~i~vg~~------~~~lav---s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 310 SRFVVVLDA----KTGERLAKFEMGHE------IDSINV---SQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEEET----TTCCEEEEEEEEEE------ECEEEE---CSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCEEEEEEC----CCCeEEEEEECCCC------cceEEE---CCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 578999987 57778888886531 345666 66776 5544 44344699999999987553
No 61
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=91.12 E-value=8.5 Score=34.77 Aligned_cols=192 Identities=9% Similarity=0.008 Sum_probs=89.4
Q ss_pred eEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEecccccc
Q 040165 105 LVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNLG 183 (358)
Q Consensus 105 ll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~~ 183 (358)
.|++. ....+...++.++....+-.. .....++.+|+..+...++- .....+..++..+.. +.....
T Consensus 85 ~ll~~--~~~~I~~i~l~~~~~~~~~~~-----~~~~~~l~~d~~~~~lywsD--~~~~~I~~~~~~g~~~~~~~~~--- 152 (400)
T 3p5b_L 85 YLFFT--NRHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDT--- 152 (400)
T ss_dssp EEEEE--ETTEEEEECTTSCSCEEEECS-----CSCEEEEEEETTTTEEEEEE--TTTTEEEEEEC------CCCEE---
T ss_pred eeEEe--ccceeEEEccCCcceeEeccc-----cCcceEEeeeeccCceEEEe--cCCCeEEEEEcccCCCCCcceE---
Confidence 44443 345566666666555443211 11267788888766433222 233456666665421 111111
Q ss_pred cccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEE--ECCeeEEEeecc
Q 040165 184 VKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGV--VGGCLSLNVCCS 257 (358)
Q Consensus 184 ~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~--~~g~L~lv~~~~ 257 (358)
...... ....++.+ +|.|||..... ..|..+|+....-..+ ..... .-..|++ .+|.||...
T Consensus 153 -~~~~~~-~~p~glavD~~~~~lY~~d~~~------~~I~~~~~~g~~~~~l~~~~~~-~P~~iavdp~~g~ly~td--- 220 (400)
T 3p5b_L 153 -VISRDI-QAPDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTD--- 220 (400)
T ss_dssp -EECSSC-SCEEEEEEETTTTEEEEEETTT------TEEEEECTTTCSEEEEEECSSC-CEEEEEEETTTTEEEEEE---
T ss_pred -EEeCCC-CCcccEEEEecCCceEEEECCC------CeEEEEeCCCCceEEEEeCCCC-CcceEEEecccCeEEEEe---
Confidence 000011 11223333 68999997664 5899999987654433 21111 1234444 367777765
Q ss_pred cccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 258 NCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 258 ~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
......+ ++.+..+.. . ++ .+. ..+ ..|.++.++..++.||+.......+..+|++....+.+
T Consensus 221 --~~~~~~I--~~~~~dG~~-~--~~-~~~-~~l------~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 221 --WGTPAKI--KKGGLNGVD-I--YS-LVT-ENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp --CSSSCCE--EEEETTSCS-C--EE-EEC-SSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred --CCCCCEE--EEEeCCCCc-c--EE-EEE-CCC------CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 2222344 444432221 1 11 011 111 23444433445555777665544577777765544444
No 62
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=90.99 E-value=7.9 Score=34.17 Aligned_cols=192 Identities=11% Similarity=0.006 Sum_probs=101.1
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc--e
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS--W 175 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~--W 175 (358)
.....+|.+.+. .....++.+|+.|++.+.--..+......... + +. +|+.. .....+..|+..+++ |
T Consensus 98 ~~~~~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~----~---~~-~v~v~-~~~g~l~~~d~~tG~~~W 167 (376)
T 3q7m_A 98 GVTVSGGHVYIG-SEKAQVYALNTSDGTVAWQTKVAGEALSRPVV----S---DG-LVLIH-TSNGQLQALNEADGAVKW 167 (376)
T ss_dssp EEEEETTEEEEE-ETTSEEEEEETTTCCEEEEEECSSCCCSCCEE----E---TT-EEEEE-CTTSEEEEEETTTCCEEE
T ss_pred CceEeCCEEEEE-cCCCEEEEEECCCCCEEEEEeCCCceEcCCEE----E---CC-EEEEE-cCCCeEEEEECCCCcEEE
Confidence 445567877776 45678899999998754211111111000011 1 12 23222 344578888888774 8
Q ss_pred EecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEe-cCCCC--------CCceEEE
Q 040165 176 RDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRV-GEACH--------PRSVSLG 244 (358)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i-~~P~~--------~~~~~l~ 244 (358)
+..... ...........+..+|.+|.-... ..+.++|..++ .|+.- ..|.. .......
T Consensus 168 ~~~~~~----~~~~~~~~~~~~~~~~~v~~g~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~ 236 (376)
T 3q7m_A 168 TVNLDM----PSLSLRGESAPTTAFGAAVVGGDN-------GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV 236 (376)
T ss_dssp EEECCC---------CCCCCCEEETTEEEECCTT-------TEEEEEETTTCCEEEEEECCC-----------CCCCCCE
T ss_pred EEeCCC----CceeecCCCCcEEECCEEEEEcCC-------CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE
Confidence 765431 111111224556678887774333 38999999765 44432 33310 0112334
Q ss_pred EECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEE
Q 040165 245 VVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFIS 324 (358)
Q Consensus 245 ~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~ 324 (358)
..+|.+++.. . ...+..+..+. .+..|... ... .....+ .++.|++...+.. ++.
T Consensus 237 ~~~~~v~~~~-----~--~g~l~~~d~~t--G~~~w~~~----~~~-------~~~~~~----~~~~l~~~~~~g~-l~~ 291 (376)
T 3q7m_A 237 VVNGVVFALA-----Y--NGNLTALDLRS--GQIMWKRE----LGS-------VNDFIV----DGNRIYLVDQNDR-VMA 291 (376)
T ss_dssp EETTEEEEEC-----T--TSCEEEEETTT--CCEEEEEC----CCC-------EEEEEE----ETTEEEEEETTCC-EEE
T ss_pred EECCEEEEEe-----c--CcEEEEEECCC--CcEEeecc----CCC-------CCCceE----ECCEEEEEcCCCe-EEE
Confidence 4578887776 2 23454444433 23456542 111 122222 2566887776654 999
Q ss_pred EECCCCeEEEe
Q 040165 325 CNLNERTLEEI 335 (358)
Q Consensus 325 yd~~t~~~~~v 335 (358)
+|++|++..+-
T Consensus 292 ~d~~tG~~~w~ 302 (376)
T 3q7m_A 292 LTIDGGVTLWT 302 (376)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCcEEEe
Confidence 99999876554
No 63
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=90.83 E-value=7.5 Score=33.68 Aligned_cols=164 Identities=7% Similarity=0.037 Sum_probs=88.2
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcC-CCceEecccccccccccccCCCCceEE--ECce-EEEEeecCCCCCCC
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMK-AFSWRDVHYNLGVKLFYGTESPPKGCL--FNGA-LHWLVSGFHFGSQD 216 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~~~~~~v~--~~G~-lywl~~~~~~~~~~ 216 (358)
...+.++|..+ ++........+.+|+.. +++...... ...........+. -+|. +|......
T Consensus 143 ~~~~~~spdg~---l~v~~~~~~~v~~~~~~~~g~~~~~~~-----~~~~~g~~p~~~~~spdg~~l~v~~~~~------ 208 (347)
T 3hfq_A 143 IHYTDLTPDNR---LAVIDLGSDKVYVYNVSDAGQLSEQSV-----LTMEAGFGPRHLVFSPDGQYAFLAGELS------ 208 (347)
T ss_dssp EEEEEECTTSC---EEEEETTTTEEEEEEECTTSCEEEEEE-----EECCTTCCEEEEEECTTSSEEEEEETTT------
T ss_pred ceEEEECCCCc---EEEEeCCCCEEEEEEECCCCcEEEeee-----EEcCCCCCCceEEECCCCCEEEEEeCCC------
Confidence 44567777655 22222345678999988 566554332 1110000111222 3676 55544332
Q ss_pred cEEEEEECC--CCeeEEe----cCCCC----CCceEEEEE-CCe-eEEEeecccccCCCCcEEEEEEccCCCCCceeEEE
Q 040165 217 PVIIAFDLA--EEKFCRV----GEACH----PRSVSLGVV-GGC-LSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLT 284 (358)
Q Consensus 217 ~~i~~fD~~--~~~~~~i----~~P~~----~~~~~l~~~-~g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~ 284 (358)
..+..||+. ++++..+ ..|.. .....++.. +|+ |++.. .....+.+|.++.. +.+..+.
T Consensus 209 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~------~~~~~v~v~~~~~~---g~~~~~~ 279 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN------RGYNTLAVFAVTAD---GHLTLIQ 279 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE------ETTTEEEEEEECGG---GCEEEEE
T ss_pred CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe------CCCCEEEEEEECCC---CcEEEeE
Confidence 355555554 5666543 22321 112234443 777 44444 23568999999752 3566666
Q ss_pred EeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEE--ECCCCeEEEe
Q 040165 285 KIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISC--NLNERTLEEI 335 (358)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~y--d~~t~~~~~v 335 (358)
.++... .....+++ ..+|+ |++...+.+.+..| |.++++.+.+
T Consensus 280 ~~~~~~-----~~~~~~~~---spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 280 QISTEG-----DFPRDFDL---DPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp EEECSS-----SCCCEEEE---CTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEecCC-----CCcCeEEE---CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 666522 11345666 66777 66665553446666 8889999877
No 64
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=90.80 E-value=7 Score=33.25 Aligned_cols=164 Identities=14% Similarity=0.038 Sum_probs=90.8
Q ss_pred eEEEeEeCCCCCeEEEEEE--ccceEEEEEEcCCCceEecccccccccccccCCCCce-EEECceEEEEeecCCCCCCCc
Q 040165 141 LYGFGYDSSTDDYKVLAVS--CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKG-CLFNGALHWLVSGFHFGSQDP 217 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~--~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~-v~~~G~lywl~~~~~~~~~~~ 217 (358)
..++.+++. + .+.... .....+.+++..+++=...-. ++. .....+ +..++.+|.+.... .
T Consensus 23 ~~Gl~~~~d-g--~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----l~~--~~fgeGi~~~g~~lyv~t~~~------~ 86 (266)
T 2iwa_A 23 TQGLVYAEN-D--TLFESTGLYGRSSVRQVALQTGKVENIHK-----MDD--SYFGEGLTLLNEKLYQVVWLK------N 86 (266)
T ss_dssp EEEEEECST-T--EEEEEECSTTTCEEEEEETTTCCEEEEEE-----CCT--TCCEEEEEEETTEEEEEETTC------S
T ss_pred cccEEEeCC-C--eEEEECCCCCCCEEEEEECCCCCEEEEEe-----cCC--CcceEEEEEeCCEEEEEEecC------C
Confidence 457777765 3 222221 235789999999886322111 111 111223 34566899888654 5
Q ss_pred EEEEEECCCCee-EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCc
Q 040165 218 VIIAFDLAEEKF-CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHG 296 (358)
Q Consensus 218 ~i~~fD~~~~~~-~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 296 (358)
.+.++|+.+.+- ..++.+ ......+...+++|++.. ... .++.+|. ..-..+.+|..........
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-------gs~--~l~viD~----~t~~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-------GTS--ILYEIDP----HTFKLIKKHNVKYNGHRVI 152 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-------SSS--EEEEECT----TTCCEEEEEECEETTEECC
T ss_pred EEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-------CCC--eEEEEEC----CCCcEEEEEEECCCCcccc
Confidence 899999987644 445555 122344555456666433 223 5677765 3444566666532111111
Q ss_pred eeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 297 SLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 297 ~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
...-+.+ . +|.+|......+.+...|++|++......+
T Consensus 153 ~~nele~---~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 153 RLNELEY---I-NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp CEEEEEE---E-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred cceeEEE---E-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 1223333 3 577887775555699999999987554354
No 65
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=90.74 E-value=7 Score=33.15 Aligned_cols=167 Identities=10% Similarity=-0.040 Sum_probs=93.3
Q ss_pred ceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEE
Q 040165 140 YLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVI 219 (358)
Q Consensus 140 ~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i 219 (358)
+..++.++. +...+-........+.+++.+|++=...-. ++... ........++.+|.+.... ..+
T Consensus 44 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-----l~~~~-FgeGit~~g~~ly~ltw~~------~~v 109 (262)
T 3nol_A 44 FTEGFFYRN--GYFYESTGLNGRSSIRKVDIESGKTLQQIE-----LGKRY-FGEGISDWKDKIVGLTWKN------GLG 109 (262)
T ss_dssp EEEEEEEET--TEEEEEEEETTEEEEEEECTTTCCEEEEEE-----CCTTC-CEEEEEEETTEEEEEESSS------SEE
T ss_pred ccceEEEEC--CEEEEECCCCCCceEEEEECCCCcEEEEEe-----cCCcc-ceeEEEEeCCEEEEEEeeC------CEE
Confidence 456777772 321111111335689999999986322211 22111 1122345678899987664 589
Q ss_pred EEEECCCCee-EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCcee
Q 040165 220 IAFDLAEEKF-CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSL 298 (358)
Q Consensus 220 ~~fD~~~~~~-~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 298 (358)
.+||+.+.+- ..++.+.. ...++.-+++|++.. ... .||.+|. ..=..+.+|....-.......
T Consensus 110 ~v~D~~t~~~~~ti~~~~e--G~glt~dg~~L~~Sd-------Gs~--~i~~iDp----~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGE--GWGLTHNDQYLIMSD-------GTP--VLRFLDP----ESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp EEEETTTCCEEEEEECSSC--CCCEEECSSCEEECC-------SSS--EEEEECT----TTCSEEEEEECEETTEECCCE
T ss_pred EEEECccCcEEEEEECCCC--ceEEecCCCEEEEEC-------CCC--eEEEEcC----CCCeEEEEEEeccCCcccccc
Confidence 9999987654 45666632 234444455565544 122 4677775 233456666653210001112
Q ss_pred eEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 299 VTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 299 ~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
.-+.. . +|.|+......+.+...|++|++.....++.
T Consensus 175 NELe~---~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 175 NELEW---V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp EEEEE---E-TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred ceeEE---E-CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 22333 2 6788887765557999999999986665653
No 66
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=90.69 E-value=6.7 Score=32.88 Aligned_cols=195 Identities=11% Similarity=0.010 Sum_probs=101.3
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
+....+|-+.+.......++++||. ++...+..+... .....+.+|+.. ..-+.. .....+..|+.. ++...
T Consensus 67 i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~---~~~~~i~~~~~g-~l~v~~--~~~~~i~~~~~~-g~~~~ 138 (300)
T 2qc5_A 67 LIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD---SGPYGITEGLNG-DIWFTQ--LNGDRIGKLTAD-GTIYE 138 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT---CCEEEEEECSTT-CEEEEE--TTTTEEEEECTT-SCEEE
T ss_pred EEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC---CCCccceECCCC-CEEEEc--cCCCeEEEECCC-CCEEE
Confidence 3334567666652345778899988 666544322111 124556667543 222211 224467777776 55543
Q ss_pred cccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEE-CCeeEEE
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVV-GGCLSLN 253 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~-~g~L~lv 253 (358)
... +... ....++.+ +|.+|+..... ..|..||. ++++..+..|... ....++.. +|.|++.
T Consensus 139 ~~~------~~~~-~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 139 YDL------PNKG-SYPAFITLGSDNALWFTENQN------NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp EEC------SSTT-CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred ccC------CCCC-CCceeEEECCCCCEEEEecCC------CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE
Confidence 321 1101 11223333 58876655432 48999999 6677666665321 23344444 7888887
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
. . ....+.++ +.. +..... .++.. ......+++ ..+|+|++.......+..||+ ++++.
T Consensus 205 ~-----~-~~~~i~~~--~~~---g~~~~~-~~~~~-----~~~~~~i~~---d~~g~l~v~~~~~~~i~~~~~-~g~~~ 263 (300)
T 2qc5_A 205 E-----I-MGNKIGRI--TTT---GEISEY-DIPTP-----NARPHAITA---GKNSEIWFTEWGANQIGRITN-DNTIQ 263 (300)
T ss_dssp E-----T-TTTEEEEE--CTT---CCEEEE-ECSST-----TCCEEEEEE---CSTTCEEEEETTTTEEEEECT-TSCEE
T ss_pred c-----c-CCCEEEEE--cCC---CcEEEE-ECCCC-----CCCceEEEE---CCCCCEEEeccCCCeEEEECC-CCcEE
Confidence 6 2 23344444 431 233332 22211 111233444 456778888755445999999 56666
Q ss_pred Ee
Q 040165 334 EI 335 (358)
Q Consensus 334 ~v 335 (358)
.+
T Consensus 264 ~~ 265 (300)
T 2qc5_A 264 EY 265 (300)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=90.45 E-value=8.2 Score=33.50 Aligned_cols=202 Identities=11% Similarity=0.143 Sum_probs=96.4
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNL 182 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~ 182 (358)
+|-+++.......+.|+|..++++..+-..... ......+.+.+. +++-+.+ .....+.+|+..++.+.....
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~-~~~l~~~--~~dg~i~vwd~~~~~~~~~~~-- 91 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH--NGQVTGVDWAPD-SNRIVTC--GTDRNAYVWTLKGRTWKPTLV-- 91 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECC--SSCEEEEEEETT-TTEEEEE--ETTSCEEEEEEETTEEEEEEE--
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC--CCcccEEEEeCC-CCEEEEE--cCCCeEEEEECCCCeeeeeEE--
Confidence 343333323566778888888753222221111 112455666774 3443333 345678999998887755432
Q ss_pred ccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCe-e---EEecCCCCCCceEEEEE-CCeeEEEee
Q 040165 183 GVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEK-F---CRVGEACHPRSVSLGVV-GGCLSLNVC 255 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~-~---~~i~~P~~~~~~~l~~~-~g~L~lv~~ 255 (358)
... ....-.++.+ +|.....+... ..|..+|+.++. + ..+..+.......+... +|++.+.+.
T Consensus 92 ---~~~-~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 92 ---ILR-INRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ---CCC-CSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ---eec-CCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 110 0011112222 45544444432 356677766543 2 22222222222333333 666655552
Q ss_pred cccccCCCCcEEEEEEccCCC-----CCce-------eEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEE
Q 040165 256 CSNCVDKTTDFELWVMKQYGV-----HSSW-------ERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFI 323 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~-----~~~W-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~ 323 (358)
....+.+|.+..... ...| ..+..+.. +......+++ ..+|+.++.....+.+.
T Consensus 162 ------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~---~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 162 ------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-----SCGWVHGVCF---SANGSRVAWVSHDSTVC 227 (372)
T ss_dssp ------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-----CSSCEEEEEE---CSSSSEEEEEETTTEEE
T ss_pred ------CCCCEEEEEcccccccccccccccccccchhhheEecCC-----CCCeEEEEEE---CCCCCEEEEEeCCCEEE
Confidence 346799998642110 0112 22223221 1122444555 55666555444434599
Q ss_pred EEECCCCeEEEe
Q 040165 324 SCNLNERTLEEI 335 (358)
Q Consensus 324 ~yd~~t~~~~~v 335 (358)
.||+++++....
T Consensus 228 i~d~~~~~~~~~ 239 (372)
T 1k8k_C 228 LADADKKMAVAT 239 (372)
T ss_dssp EEEGGGTTEEEE
T ss_pred EEECCCCceeEE
Confidence 999987765443
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.81 E-value=10 Score=33.71 Aligned_cols=196 Identities=10% Similarity=0.033 Sum_probs=103.7
Q ss_pred EEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEec
Q 040165 99 IGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDV 178 (358)
Q Consensus 99 ~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~ 178 (358)
++..++.++.. .....+.|||..+++...+-.... ......+.+.+. +.+-+++ .....+.+|+..+++-...
T Consensus 99 ~~~s~~~l~~~-~~d~~v~lw~~~~~~~~~~~~~~~---~~~v~~v~~s~~-~~~l~~~--~~dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 99 LDWSNLNVVAV-ALERNVYVWNADSGSVSALAETDE---STYVASVKWSHD-GSFLSVG--LGNGLVDIYDVESQTKLRT 171 (401)
T ss_dssp EEECTTSEEEE-EETTEEEEEETTTCCEEEEEECCT---TCCEEEEEECTT-SSEEEEE--ETTSCEEEEETTTCCEEEE
T ss_pred EeecCCCEEEE-ECCCeEEEeeCCCCcEeEeeecCC---CCCEEEEEECCC-CCEEEEE--CCCCeEEEEECcCCeEEEE
Confidence 33333444333 367789999999988766544321 112455667663 3443333 3456789999887653221
Q ss_pred ccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEE-CCeeEEEeec
Q 040165 179 HYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVV-GGCLSLNVCC 256 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~-~g~L~lv~~~ 256 (358)
-. .....-.++.++|.+...+... ..|..+|+.+..-....+..+. ....+... +|.+.+.+.
T Consensus 172 ~~--------~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~- 236 (401)
T 4aez_A 172 MA--------GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG- 236 (401)
T ss_dssp EC--------CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-
T ss_pred ec--------CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe-
Confidence 11 0111123445577655555543 5899999985432222222111 12233333 666666652
Q ss_pred ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCC-cEEEEEc--CcceEEEEECCCCeEE
Q 040165 257 SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGG-DEIIMIN--KWREFISCNLNERTLE 333 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~--~~~~l~~yd~~t~~~~ 333 (358)
....+.+|.+... ..+..+... ......+++ ..++ .++.... ..+.+..||+++++..
T Consensus 237 -----~d~~v~iwd~~~~------~~~~~~~~~-----~~~v~~~~~---~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 237 -----NDNVVQIWDARSS------IPKFTKTNH-----NAAVKAVAW---CPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp -----TTSCEEEEETTCS------SEEEEECCC-----SSCCCEEEE---CTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred -----CCCeEEEccCCCC------CccEEecCC-----cceEEEEEE---CCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 3468999988751 122222211 112444555 4434 4666553 2335999999887665
Q ss_pred Ee
Q 040165 334 EI 335 (358)
Q Consensus 334 ~v 335 (358)
..
T Consensus 298 ~~ 299 (401)
T 4aez_A 298 NT 299 (401)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 69
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=89.75 E-value=8.6 Score=32.67 Aligned_cols=220 Identities=13% Similarity=0.075 Sum_probs=112.2
Q ss_pred ecceEEEEEe--CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 102 CNGLVCMALH--GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 102 ~~Gll~~~~~--~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
-+|.|..... ..+.+.++|+.|++...--+.+. ..+..++..+. + ++.........+.+|+..+.+ .+.
T Consensus 30 ~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---~~fgeGi~~~g--~--~lyv~t~~~~~v~viD~~t~~--v~~ 100 (266)
T 2iwa_A 30 ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---SYFGEGLTLLN--E--KLYQVVWLKNIGFIYDRRTLS--NIK 100 (266)
T ss_dssp STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---TCCEEEEEEET--T--EEEEEETTCSEEEEEETTTTE--EEE
T ss_pred CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---CcceEEEEEeC--C--EEEEEEecCCEEEEEECCCCc--EEE
Confidence 3476666522 35789999999998754322221 11234455542 2 333332456789999988763 233
Q ss_pred cccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCCCC---Cc-eEEEEECCeeEEEe
Q 040165 180 YNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEACHP---RS-VSLGVVGGCLSLNV 254 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~---~~-~~l~~~~g~L~lv~ 254 (358)
. ++.+ ....-++..+|.--|.+... ..|..+|+.+.+- ..|+..... .. -.+...+|+|++..
T Consensus 101 ~-----i~~g-~~~g~glt~Dg~~l~vs~gs------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 101 N-----FTHQ-MKDGWGLATDGKILYGSDGT------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp E-----EECC-SSSCCEEEECSSSEEEECSS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred E-----EECC-CCCeEEEEECCCEEEEECCC------CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence 2 2322 12234466666533344322 5899999988543 445443111 11 12333389888665
Q ss_pred ecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccc------cCceeeEEEEeeecCCCcEEEEEcCcceEEEEECC
Q 040165 255 CCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVR------YHGSLVTLCTATGTDGGDEIIMINKWREFISCNLN 328 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~ 328 (358)
. ... +|.+.|. .++..+.+|+...+.. ......+.++.++.+.+.+|+....+..++..++.
T Consensus 169 -----~-~~~--~V~vID~----~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 169 -----W-QTD--CIARISA----KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp -----T-TSS--EEEEEET----TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred -----C-CCC--eEEEEEC----CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 2 222 6677876 4666778888643210 01112444443344444488888877778888887
Q ss_pred CCeEEEeeccccccceeeeeeecccCCC
Q 040165 329 ERTLEEIYRPNFDWCETVSYTESILSPN 356 (358)
Q Consensus 329 t~~~~~v~~~~~~~~~~~~y~~sl~~~~ 356 (358)
+.. ... ....-...|+++..+-++++
T Consensus 237 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 262 (266)
T 2iwa_A 237 LVR-HRI-PDGYIERHCLNLRDNTLSLK 262 (266)
T ss_dssp ECC-SCC-CTTHHHHHHSCC--------
T ss_pred ccc-CCc-chhHHHhhCccccCCeeeee
Confidence 654 122 22211122344666655543
No 70
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=89.51 E-value=11 Score=33.64 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=103.1
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-+++.......+.++|+.+++....-.... .....+.+++..+ +-++.. .....+.+|+..+++....-.
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~l~~~~-~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG----KWSKILLYDPIRD-LVYCSN-WISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS----SSEEEEEEETTTT-EEEEEE-TTTTEEEEEETTTTEEEEECC
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC----CCeeEEEEcCCCC-EEEEEe-cCCCcEEEEECCCCcEEEEec
Confidence 4567666653456789999998866543221111 1144566777544 322222 345688999998876533221
Q ss_pred ccccccccccCCCCceEEE--CceEEEEeecCCCCC--CCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CC-eeEEE
Q 040165 181 NLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGS--QDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GG-CLSLN 253 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~--~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g-~L~lv 253 (358)
.. ....++.+ +|...+.+..+.... ....|..||+.+++.... ..+. ....+... +| .|++.
T Consensus 252 -----~~----~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~ 320 (433)
T 3bws_A 252 -----KI----GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVS 320 (433)
T ss_dssp -----CC----SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEE
T ss_pred -----CC----CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEE
Confidence 10 00112222 565444444321100 124788999988765332 2221 11223322 55 45555
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc-------------
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW------------- 319 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~------------- 319 (358)
. .....+.+|.++. ...+..++... ....+++ ..+|+ +++.....
T Consensus 321 ~------~~~~~v~v~d~~~------~~~~~~~~~~~------~~~~~~~---s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 321 D------MCCSKIEVYDLKE------KKVQKSIPVFD------KPNTIAL---SPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp E------TTTTEEEEEETTT------TEEEEEEECSS------SEEEEEE---CTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred e------cCCCEEEEEECCC------CcEEEEecCCC------CCCeEEE---cCCCCEEEEEecCCCcccccccccccc
Confidence 4 2356899998764 22334444321 1344555 55676 55554431
Q ss_pred -ceEEEEECCCCeEEEe
Q 040165 320 -REFISCNLNERTLEEI 335 (358)
Q Consensus 320 -~~l~~yd~~t~~~~~v 335 (358)
+.++.+|+++++....
T Consensus 380 dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 380 LGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp CCEEEEEETTTTEEEEE
T ss_pred ceEEEEEECCCCcEEEE
Confidence 1599999999877654
No 71
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=89.43 E-value=9.9 Score=32.92 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=91.5
Q ss_pred CCceEEEEcccccceecc-CCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC---ce-Eeccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKL-PDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF---SW-RDVHYNLGVKL 186 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~l-P~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~---~W-~~~~~~~~~~~ 186 (358)
....+.++++.+++...+ +... ...++.+|+..+.. ...-.....+..++..+. +- +.+ .
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~~~~------~p~g~~~d~~~~~l--y~~D~~~~~I~~~~~~g~~~~~~~~~~-------~ 72 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRI--YWSDLSQRMICSTQLDRAHGVSSYDTV-------I 72 (316)
T ss_dssp CBSSEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEE--EEEETTTTEEEEEEC--------CEEE-------E
T ss_pred CCCeEEEEECCCcceEehhcCCC------ceEEEEEEeCCCEE--EEEECCCCcEEEEECCCCCCCcccEEE-------E
Confidence 445567777777665443 2221 25678888876642 222223456777776651 21 111 1
Q ss_pred ccccCCCCceEE---ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEeeccccc
Q 040165 187 FYGTESPPKGCL---FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNVCCSNCV 260 (358)
Q Consensus 187 ~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~~~~~~~ 260 (358)
+... ....++. .+|.+||..... ..|..+|+....-..+ ...... -..++.. +|.|++.. .
T Consensus 73 ~~~~-~~p~glavd~~~~~ly~~d~~~------~~I~~~~~~g~~~~~~~~~~~~~-P~~iavdp~~g~ly~~d-----~ 139 (316)
T 1ijq_A 73 SRDI-QAPDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFRENGSK-PRAIVVDPVHGFMYWTD-----W 139 (316)
T ss_dssp CSSC-SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEEECTTCC-EEEEEEETTTTEEEEEE-----C
T ss_pred eCCC-CCcCEEEEeecCCeEEEEECCC------CEEEEEeCCCCceEEEEECCCCC-cceEEeCCCCCEEEEEc-----c
Confidence 1111 1123443 368999987654 5899999986544333 222211 2344443 67787765 2
Q ss_pred CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 261 DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 261 ~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..... |++.+.++. -.++ +-...+ ..|.++..+..++.||+.....+.+..+|++....+.+
T Consensus 140 ~~~~~--I~~~~~dG~---~~~~--~~~~~~------~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 140 GTPAK--IKKGGLNGV---DIYS--LVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp SSSCE--EEEEETTSC---CEEE--EECSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCe--EEEEcCCCC---CeEE--EEECCC------CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 11233 455443221 1111 111111 34444433445566777776555688888876555544
No 72
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=89.41 E-value=9.7 Score=32.78 Aligned_cols=204 Identities=9% Similarity=0.010 Sum_probs=105.0
Q ss_pred EEeecceEEEEEeCCceEEEEcccccceec-cCCCCCCC---CCC-ceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC
Q 040165 99 IGSCNGLVCMALHGCKDFFIYNPSTRAHKK-LPDPDISL---GSP-YLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF 173 (358)
Q Consensus 99 ~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~-lP~~~~~~---~~~-~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~ 173 (358)
+...++.+.+.......+.++|+.|++... ++...... ... ....+.+++..+. -.+.-......+.+++..++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEEEESSSCEEEEEETTTT
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEEecCCCceEEEEcCCCC
Confidence 333334455442356789999999987643 33221110 001 1345677776553 22222123567889998876
Q ss_pred ceEe-cccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCC--C-CceEEEEE-C
Q 040165 174 SWRD-VHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACH--P-RSVSLGVV-G 247 (358)
Q Consensus 174 ~W~~-~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~--~-~~~~l~~~-~ 247 (358)
+=.. ++. .......-.+.-+|...+..... ..|..+|+.+.+... ++.+.. . ....++.. +
T Consensus 175 ~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 175 KLKTAIQN-------TGKMSTGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp EEEEEECC-------CCTTCCCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred ceEEEecC-------CCCccceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence 4321 110 01001112223356543333332 478899999876643 455321 1 22234444 5
Q ss_pred Ce-eEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEE
Q 040165 248 GC-LSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISC 325 (358)
Q Consensus 248 g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~y 325 (358)
|+ |++.. .....+.+|.++. . ..+..++... ...+++ ..+|+ +++.....+.+..+
T Consensus 242 g~~l~~~~------~~~~~v~~~d~~~----~--~~~~~~~~~~-------~~~~~~---s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 242 RQRAFITD------SKAAEVLVVDTRN----G--NILAKVAAPE-------SLAVLF---NPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp TTEEEEEE------SSSSEEEEEETTT----C--CEEEEEECSS-------CCCEEE---ETTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEe------CCCCEEEEEECCC----C--cEEEEEEcCC-------CceEEE---CCCCCEEEEEECCCCeEEEE
Confidence 55 54444 2346777776643 2 2334444322 122444 45666 77776544569999
Q ss_pred ECCCCeEEEeecc
Q 040165 326 NLNERTLEEIYRP 338 (358)
Q Consensus 326 d~~t~~~~~v~~~ 338 (358)
|+++++.......
T Consensus 300 d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 300 DAKSYKVVKTFDT 312 (353)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEEEec
Confidence 9999887654333
No 73
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=89.39 E-value=18 Score=35.97 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=32.4
Q ss_pred CceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEe
Q 040165 194 PKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNV 254 (358)
Q Consensus 194 ~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~ 254 (358)
..++.+ +|.|||..... ..|.++|+....-..+ .-... .-..|++. +|.||+..
T Consensus 473 P~GLAvD~~~~~LY~tD~~~------~~I~v~~ldG~~~~~l~~~~l~-~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFRENGS-KPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp CCEEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEEECTTC-CEEEEEEETTTTEEEEEE
T ss_pred cceeeeeecCCcEEEEecCC------CeEEEEeCCCCeEEEEEeCCCC-CcceEEEecCCCCEEEec
Confidence 344544 46999987664 5899999986654443 21121 12344543 67787776
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=89.33 E-value=9.6 Score=32.63 Aligned_cols=207 Identities=7% Similarity=-0.104 Sum_probs=102.3
Q ss_pred Eeecce-EEEEEeCCceEEEEcc-cccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC---c
Q 040165 100 GSCNGL-VCMALHGCKDFFIYNP-STRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF---S 174 (358)
Q Consensus 100 ~s~~Gl-l~~~~~~~~~~~V~NP-~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~---~ 174 (358)
-+.+|- .++.......+.+||. .+++...+..... ......+.+.+ +.+-+.+ .....+.+++..+. .
T Consensus 64 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~~~v~~l~~~~--~~~l~s~--~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA---NLGICRICKYG--DDKLIAA--SWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC---CSCEEEEEEET--TTEEEEE--ETTSEEEEECHHHHTTBC
T ss_pred ECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCC---CCceEEEEeCC--CCEEEEE--cCCCeEEEEccccccccc
Confidence 334555 4444356788999999 8887766644100 11245567777 4444433 34567788876540 0
Q ss_pred ----eEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCC-Ce--eEEecCCCCCCceEEEEE-
Q 040165 175 ----WRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE-EK--FCRVGEACHPRSVSLGVV- 246 (358)
Q Consensus 175 ----W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~-~~--~~~i~~P~~~~~~~l~~~- 246 (358)
.+.+.. +. ....-.++.+++.-...+... ..|..||+.+ .. ......+.......+...
T Consensus 137 ~~~~~~~~~~-----~~--~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~ 203 (342)
T 1yfq_A 137 IAVKNLNSNN-----TK--VKNKIFTMDTNSSRLIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203 (342)
T ss_dssp EEEEESCSSS-----SS--SCCCEEEEEECSSEEEEEEST------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred ccccCCeeeE-----Ee--eCCceEEEEecCCcEEEEeCC------CeEEEEECCccccccceeeecCCCCceeEEEECC
Confidence 111111 11 101122333433332223222 4899999987 33 333333322222333333
Q ss_pred -CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCc--c--ccCceeeEEEEeeecCCCcEEEEEcCcce
Q 040165 247 -GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIM--V--RYHGSLVTLCTATGTDGGDEIIMINKWRE 321 (358)
Q Consensus 247 -~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~--~--~~~~~~~~~~~~~~~~~g~i~~~~~~~~~ 321 (358)
+|++++++. ....+.+|.++..+..........+..... . ........+++ ..+|+.++.....+.
T Consensus 204 ~~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 204 KEQEGYACSS------IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF---SPRHKFLYTAGSDGI 274 (342)
T ss_dssp GGGCEEEEEE------TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE---CTTTCCEEEEETTSC
T ss_pred CCCCEEEEEe------cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE---cCCCCEEEEecCCce
Confidence 566666652 356899999976411111222233332210 0 00112444555 556775554443335
Q ss_pred EEEEECCCCeEEEe
Q 040165 322 FISCNLNERTLEEI 335 (358)
Q Consensus 322 l~~yd~~t~~~~~v 335 (358)
+..||+++++....
T Consensus 275 i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 275 ISCWNLQTRKKIKN 288 (342)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEcCccHhHhhh
Confidence 99999998875443
No 75
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.53 E-value=11 Score=32.10 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=100.8
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceecc-CCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceE
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKL-PDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWR 176 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~l-P~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~ 176 (358)
+.-+.+|-++... ....+.|||..+++.... ..............+.+.+.. ++-+++ .....+.+|+..+++..
T Consensus 57 ~~~~~~~~~l~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~--~~d~~i~~~d~~~~~~~ 132 (337)
T 1gxr_A 57 VTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVG--GEASTLSIWDLAAPTPR 132 (337)
T ss_dssp EEECSSSSEEEEE-CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEE--ESSSEEEEEECCCC--E
T ss_pred EEEecCCcEEEEc-CCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEE--cCCCcEEEEECCCCCcc
Confidence 3334455554442 367788998877653221 111100111224556666643 333333 34568999999888754
Q ss_pred ecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEE
Q 040165 177 DVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSL 252 (358)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~l 252 (358)
.... +.... ..-.++.+ +|.....+... ..|..+|+.+.+... +..... ....+... +|...+
T Consensus 133 ~~~~-----~~~~~-~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 133 IKAE-----LTSSA-PACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLW 199 (337)
T ss_dssp EEEE-----EECSS-SCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred eeee-----cccCC-CceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEE
Confidence 4332 11100 11112222 45555544443 478899998875433 222211 12233333 666655
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
++. ....+.+|.++. . .....+.... ....+++ ..+|+.++.....+.+..||+++++.
T Consensus 200 ~~~------~dg~i~~~d~~~----~--~~~~~~~~~~------~v~~~~~---s~~~~~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 200 TGG------LDNTVRSWDLRE----G--RQLQQHDFTS------QIFSLGY---CPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp EEE------TTSEEEEEETTT----T--EEEEEEECSS------CEEEEEE---CTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred EEe------cCCcEEEEECCC----C--ceEeeecCCC------ceEEEEE---CCCCCEEEEEcCCCcEEEEECCCCCe
Confidence 552 346799998765 1 2233333221 1344555 55677555444333599999998876
Q ss_pred EEe
Q 040165 333 EEI 335 (358)
Q Consensus 333 ~~v 335 (358)
..+
T Consensus 259 ~~~ 261 (337)
T 1gxr_A 259 YQL 261 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 76
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=88.52 E-value=12 Score=32.76 Aligned_cols=197 Identities=9% Similarity=-0.069 Sum_probs=96.5
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccc
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYN 181 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~ 181 (358)
-++.++.. ...+.+.|||..+++..........-.......+.+.+.. ++-+.+ .....+.+++.++++=.. .
T Consensus 92 ~d~~l~~~-s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sg--s~d~~i~iwd~~~~~~~~--~- 164 (344)
T 4gqb_B 92 GERGILVA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSG--SKDICIKVWDLAQQVVLS--S- 164 (344)
T ss_dssp TTTEEEEE-ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEE--ETTSCEEEEETTTTEEEE--E-
T ss_pred CCCeEEEE-ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEE--eCCCeEEEEECCCCcEEE--E-
Confidence 34555443 4677899999998876544322111011124455666643 333333 345678888888764211 1
Q ss_pred cccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCC-CceEEEEE--CCeeEEEee
Q 040165 182 LGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHP-RSVSLGVV--GGCLSLNVC 255 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~-~~~~l~~~--~g~L~lv~~ 255 (358)
+.. ....-.++.+ +|.-+.+.... ...|..+|+.+.+-.. +..+... ....+... ++++.+.+.
T Consensus 165 ----~~~-h~~~V~~~~~~~~~~~~l~s~s~-----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 165 ----YRA-HAAQVTCVAASPHKDSVFLSCSE-----DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp ----ECC-CSSCEEEEEECSSCTTEEEEEET-----TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred ----EcC-cCCceEEEEecCCCCCceeeecc-----ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 100 0001112222 34322233322 1478889998765433 3333222 12233332 455655551
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCC-cEEEEEcCcceEEEEECCCCeEEE
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGG-DEIIMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~l~~yd~~t~~~~~ 334 (358)
....+.+|.++.. ..+.++.. +.....-+++ ..+| .+++.....+.+..+|.++++..+
T Consensus 235 ------~dg~v~~wd~~~~------~~~~~~~~-----h~~~v~~v~f---sp~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 235 ------ENGTVSLVDTKST------SCVLSSAV-----HSQCVTGLVF---SPHSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp ------TTSEEEEEESCC--------CCEEEEC-----CSSCEEEEEE---CSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred ------cCCcEEEEECCCC------cEEEEEcC-----CCCCEEEEEE---ccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 3468999987641 12233322 2222445555 4455 455544333359999999998766
Q ss_pred e
Q 040165 335 I 335 (358)
Q Consensus 335 v 335 (358)
.
T Consensus 295 ~ 295 (344)
T 4gqb_B 295 S 295 (344)
T ss_dssp E
T ss_pred E
Confidence 5
No 77
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=88.49 E-value=11 Score=32.39 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=61.7
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCC
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHS 278 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~ 278 (358)
+|.+||..... ..|..+|+.++++..+..+.......++.. +|+|++...... ..... |+.++..+ .
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~--~~~~~--i~~~d~~~--~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF--KSTGG--IFAATENG--D 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS--SSCCE--EEEECTTS--C
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCC--CCCce--EEEEeCCC--C
Confidence 68888876553 489999999888876532211122344443 788887762110 00123 44444321 2
Q ss_pred ceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC------cceEEEEECCCCeEEEe
Q 040165 279 SWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK------WREFISCNLNERTLEEI 335 (358)
Q Consensus 279 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------~~~l~~yd~~t~~~~~v 335 (358)
.-... +.... .......+++ ..+|++++.... ...++.+|+++++.+.+
T Consensus 123 ~~~~~--~~~~~---~~~~~~~i~~---d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 123 NLQDI--IEDLS---TAYCIDDMVF---DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp SCEEE--ECSSS---SCCCEEEEEE---CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEEEE--EccCc---cCCcccceEE---CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 21111 11100 0111333445 556778887653 12499999988777654
No 78
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=87.76 E-value=12 Score=31.66 Aligned_cols=199 Identities=8% Similarity=-0.029 Sum_probs=104.8
Q ss_pred EEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccc
Q 040165 106 VCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVK 185 (358)
Q Consensus 106 l~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 185 (358)
+++.......++++||.++ ...+.... ....++.+|+..+ . +++. .....+.+|+..+++.+.....
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~-----~~~~~l~~~~dg~-l-~v~~-~~~~~i~~~d~~~g~~~~~~~~---- 108 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS-----HHQNGHCLNKQGH-L-IACS-HGLRRLERQREPGGEWESIADS---- 108 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSC-----SSEEEEEECTTCC-E-EEEE-TTTTEEEEECSTTCCEEEEECE----
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCC-----CCcceeeECCCCc-E-EEEe-cCCCeEEEEcCCCCcEEEEeec----
Confidence 4444245678899999988 55443321 1245677777543 2 2222 3346789999988887655331
Q ss_pred cccccCCCCceE--EECceEEEEee---c-C-------CCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeE
Q 040165 186 LFYGTESPPKGC--LFNGALHWLVS---G-F-------HFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLS 251 (358)
Q Consensus 186 ~~~~~~~~~~~v--~~~G~lywl~~---~-~-------~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~ 251 (358)
...........+ .-+|.+|+... . . ........|..+|.. ++...+.-... ....++.. +|++.
T Consensus 109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-~~~gi~~s~dg~~l 186 (296)
T 3e5z_A 109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV-KPNGLAFLPSGNLL 186 (296)
T ss_dssp ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS-SEEEEEECTTSCEE
T ss_pred cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC-CCccEEECCCCCEE
Confidence 000000111222 33688777521 0 0 000012489999988 55554422211 11234443 77776
Q ss_pred EEeecccccCCCCcEEEEEEccCCCCCce-eEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 252 LNVCCSNCVDKTTDFELWVMKQYGVHSSW-ERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 252 lv~~~~~~~~~~~~~~vW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
+. ......+.+|.++.. +.. .....+.. . ......+++ ..+|+|++.. .. .+..||++.+
T Consensus 187 -v~-----~~~~~~i~~~~~~~~---g~~~~~~~~~~~-~----~~~p~~i~~---d~~G~l~v~~-~~-~v~~~~~~g~ 247 (296)
T 3e5z_A 187 -VS-----DTGDNATHRYCLNAR---GETEYQGVHFTV-E----PGKTDGLRV---DAGGLIWASA-GD-GVHVLTPDGD 247 (296)
T ss_dssp -EE-----ETTTTEEEEEEECSS---SCEEEEEEEECC-S----SSCCCSEEE---BTTSCEEEEE-TT-EEEEECTTSC
T ss_pred -EE-----eCCCCeEEEEEECCC---CcCcCCCeEeeC-C----CCCCCeEEE---CCCCCEEEEc-CC-eEEEECCCCC
Confidence 54 223457888877632 344 32333311 1 111233555 6678888877 44 4999999977
Q ss_pred eEEEeeccc
Q 040165 331 TLEEIYRPN 339 (358)
Q Consensus 331 ~~~~v~~~~ 339 (358)
..+.+ ...
T Consensus 248 ~~~~~-~~~ 255 (296)
T 3e5z_A 248 ELGRV-LTP 255 (296)
T ss_dssp EEEEE-ECS
T ss_pred EEEEE-ECC
Confidence 77776 554
No 79
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=87.58 E-value=12 Score=31.73 Aligned_cols=118 Identities=9% Similarity=-0.055 Sum_probs=71.8
Q ss_pred EEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCC
Q 040165 197 CLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYG 275 (358)
Q Consensus 197 v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~ 275 (358)
...++.+|.+.... ..+.+||..+.+- ..++.+.. ...|+.-+++|++..+ .. .|+.+|.
T Consensus 102 t~~g~~Ly~ltw~~------~~v~V~D~~Tl~~~~ti~~~~e--GwGLt~Dg~~L~vSdG-------s~--~l~~iDp-- 162 (268)
T 3nok_A 102 ASDGERLYQLTWTE------GLLFTWSGMPPQRERTTRYSGE--GWGLCYWNGKLVRSDG-------GT--MLTFHEP-- 162 (268)
T ss_dssp EECSSCEEEEESSS------CEEEEEETTTTEEEEEEECSSC--CCCEEEETTEEEEECS-------SS--EEEEECT--
T ss_pred EEeCCEEEEEEccC------CEEEEEECCcCcEEEEEeCCCc--eeEEecCCCEEEEECC-------CC--EEEEEcC--
Confidence 45567898887654 5899999998655 45666532 2455555677766641 22 5667765
Q ss_pred CCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 276 VHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 276 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
+.=..+.+|....-........-+.. .+|.|+......+.+...|++|++.....++.
T Consensus 163 --~T~~v~~~I~V~~~g~~v~~lNeLe~----~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 163 --DGFALVGAVQVKLRGQPVELINELEC----ANGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp --TTCCEEEEEECEETTEECCCEEEEEE----ETTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred --CCCeEEEEEEeCCCCcccccccccEE----eCCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 23345566665331111111223333 26788887755556999999999986654553
No 80
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.05 E-value=17 Score=32.81 Aligned_cols=208 Identities=8% Similarity=-0.084 Sum_probs=106.4
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEc-cceEEEEEEcCCCc-e
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSC-LRVLLKVFSMKAFS-W 175 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~-~~~~~~vyss~t~~-W 175 (358)
+.-..+|-|.+.......+.++|+.+++...+...... .. +.+++..+ .++.... ....+.+++..++. .
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSS--EEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCC--cEEEEecCCCceEEEEEcCCCcee
Confidence 33346677666633557899999998887766443111 11 45566544 2222211 12267777776542 2
Q ss_pred Eeccccccccccc-ccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCC---CCCCc-e-EEEEE
Q 040165 176 RDVHYNLGVKLFY-GTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEA---CHPRS-V-SLGVV 246 (358)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P---~~~~~-~-~l~~~ 246 (358)
+.+.. ... ........+.. +|.||+ +... ..|..+|+.+.....+ ..+ ..... . .++..
T Consensus 208 ~~~g~-----~~~~~~~~p~~iav~p~~g~lyv-~d~~------~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 208 TRIGQ-----LGSTFSGKIGAVALDETEEWLYF-VDSN------KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEE-----CCTTSCSCCCBCEECTTSSEEEE-ECTT------CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred EEeee-----ccchhcCCcEEEEEeCCCCeEEE-EECC------CcEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence 33311 111 11111222222 689999 3322 4899999998776555 111 11122 2 56655
Q ss_pred --CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEee-cCCcc-c---cCceeeEEEEeeecCCCcEEEEEc-C
Q 040165 247 --GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKID-NDIMV-R---YHGSLVTLCTATGTDGGDEIIMIN-K 318 (358)
Q Consensus 247 --~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~-~~~~~-~---~~~~~~~~~~~~~~~~g~i~~~~~-~ 318 (358)
+|.|++.. . ....+ ++++..+ .-..+..-. ..... + ......|.++.+ ..+|+||+... .
T Consensus 276 p~~g~lyv~d-----~-~~~~I--~~~~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~-d~dG~lyvad~~~ 343 (409)
T 3hrp_A 276 FVDSNFYMSD-----Q-NLSSV--YKITPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTV-DEDGNFYIVDGFK 343 (409)
T ss_dssp TTTTEEEEEE-----T-TTTEE--EEECTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEE-CTTCCEEEEETTT
T ss_pred CCCCEEEEEe-----C-CCCEE--EEEecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEE-eCCCCEEEEeCCC
Confidence 68888876 2 23444 4444322 211111100 00000 0 001133544433 55688988877 6
Q ss_pred cceEEEEECCCCeEEEeec
Q 040165 319 WREFISCNLNERTLEEIYR 337 (358)
Q Consensus 319 ~~~l~~yd~~t~~~~~v~~ 337 (358)
..++..+|+.++++..+.+
T Consensus 344 ~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 344 GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCEEEEEeC
Confidence 6679999988888877743
No 81
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=86.95 E-value=25 Score=34.67 Aligned_cols=182 Identities=7% Similarity=-0.022 Sum_probs=97.4
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccc-cc-C
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFY-GT-E 191 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~-~~-~ 191 (358)
.-++.+||.|+++..++.... .......+..|+... +.+.. ...+..|+..+++|+.... .+. .. .
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~--~~~~v~~i~~d~~g~----lwigt-~~Gl~~~~~~~~~~~~~~~-----~~~~~~~~ 494 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKN--ELLDVRVFYEDKNKK----IWIGT-HAGVFVIDLASKKVIHHYD-----TSNSQLLE 494 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTT--CCCCEEEEEECTTSE----EEEEE-TTEEEEEESSSSSCCEEEC-----TTTSSCSC
T ss_pred CCEEEEcCCCCcEEEeccCCC--CCCeEEEEEECCCCC----EEEEE-CCceEEEeCCCCeEEeccc-----Cccccccc
Confidence 456778888887777654311 111133444444321 22222 2578889999888876543 110 00 0
Q ss_pred CCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC--CC-CCceEEEE-ECCeeEEEeecccccCCCCc
Q 040165 192 SPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA--CH-PRSVSLGV-VGGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 192 ~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P--~~-~~~~~l~~-~~g~L~lv~~~~~~~~~~~~ 265 (358)
..-.+++. +|.+ |++..+ ..+..||..++++..+..+ .. .....+.+ .+|.|.+.+ . .-
T Consensus 495 ~~i~~i~~d~~g~l-Wigt~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-----~---~G 559 (781)
T 3v9f_A 495 NFVRSIAQDSEGRF-WIGTFG------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-----G---EG 559 (781)
T ss_dssp SCEEEEEECTTCCE-EEEESS------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-----T---TE
T ss_pred ceeEEEEEcCCCCE-EEEEcC------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-----C---CC
Confidence 11122332 4554 666553 3689999999999887544 11 12344555 378888877 2 12
Q ss_pred EEEEEEccCCCCCceeEEEEeecCC-ccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDI-MVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
+ +..++.. ...+... .... ++. .....+.. ..+|.|++..... +..||+++++++..
T Consensus 560 l-v~~~d~~--~~~~~~~---~~~~gl~~--~~i~~i~~---d~~g~lW~~t~~G--l~~~~~~~~~~~~~ 617 (781)
T 3v9f_A 560 L-VCFPSAR--NFDYQVF---QRKEGLPN--THIRAISE---DKNGNIWASTNTG--ISCYITSKKCFYTY 617 (781)
T ss_dssp E-EEESCTT--TCCCEEE---CGGGTCSC--CCCCEEEE---CSSSCEEEECSSC--EEEEETTTTEEEEE
T ss_pred c-eEEECCC--CCcEEEc---cccCCCCC--ceEEEEEE---CCCCCEEEEcCCc--eEEEECCCCceEEe
Confidence 2 1333321 1333222 1111 111 11233444 4567788876554 99999999999887
No 82
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.63 E-value=14 Score=31.35 Aligned_cols=194 Identities=10% Similarity=0.039 Sum_probs=98.7
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
-+.+|-.++.......+.++|..+++.......... ......+.+.+. +.+-+++ .....+.+|+.++++-...-
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~-~~~l~~~--~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISPD-SKVCFSC--CSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS--SSCEEEEEECTT-SSEEEEE--ETTSCEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC--CCceEEEEECCC-CCEEEEE--eCCCcEEEEeCCCCceeeee
Confidence 334554433324667888999888763332221111 111345566664 3333333 34567889998877543221
Q ss_pred cccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEee
Q 040165 180 YNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVC 255 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~ 255 (358)
. ... ..-.++.+ +|.....+... ..|..||+.+.+-.. +..+. ....+... +|+..+++.
T Consensus 180 ~-----~~~---~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 180 Q-----GHT---DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp C-----CCS---SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEE
T ss_pred e-----ccc---CceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEEEc
Confidence 1 000 11112222 56555555443 489999998775433 23221 12233332 666666552
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
....+.+|.++.. .. ..+.. +......+.+ ..+|+.++.....+.+..||+++++....
T Consensus 244 ------~~~~i~~~~~~~~---~~----~~~~~-----~~~~v~~~~~---~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 244 ------ESSNVEVLHVNKP---DK----YQLHL-----HESCVLSLKF---AYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp ------TTSCEEEEETTSS---CE----EEECC-----CSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ------CCCcEEEEECCCC---Ce----EEEcC-----CccceeEEEE---CCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 3457999988752 11 12211 1122455556 56677555554444599999998876644
No 83
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=86.23 E-value=23 Score=33.42 Aligned_cols=206 Identities=9% Similarity=-0.005 Sum_probs=102.1
Q ss_pred cceEEEEEe-CCceEEEEcccccceec-cCCCCC--C----CCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc
Q 040165 103 NGLVCMALH-GCKDFFIYNPSTRAHKK-LPDPDI--S----LGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS 174 (358)
Q Consensus 103 ~Gll~~~~~-~~~~~~V~NP~T~~~~~-lP~~~~--~----~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~ 174 (358)
+|-.++..+ ....+.|+|..|++... ++.... . ........+.+++..+ +.++.. .....+.+++..+..
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~-~~~vs~-~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP-EFIVNV-KETGKVLLVNYKDID 313 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS-EEEEEE-TTTTEEEEEECTTSS
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC-EEEEEE-CCCCeEEEEEecCCC
Confidence 554333323 46778888888876543 222110 0 0001133445555433 333333 455677778776643
Q ss_pred eEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecC---CCCCCceEEEEEC-Ce
Q 040165 175 WRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGE---ACHPRSVSLGVVG-GC 249 (358)
Q Consensus 175 W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~---P~~~~~~~l~~~~-g~ 249 (358)
--.+.. ++.......-+..-+|...+.+... ...|..+|+.+.+... ++. |.......+..-+ |.
T Consensus 314 ~l~~~~-----i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~ 383 (543)
T 1nir_A 314 NLTVTS-----IGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 383 (543)
T ss_dssp SCEEEE-----EECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEE
T ss_pred cceeEE-----eccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCcc
Confidence 111111 1111101111222357644444332 1488889999987643 343 2111122333334 66
Q ss_pred eEEEeecccccCCCCcEEEEEEccCCC-CCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc----C---cce
Q 040165 250 LSLNVCCSNCVDKTTDFELWVMKQYGV-HSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN----K---WRE 321 (358)
Q Consensus 250 L~lv~~~~~~~~~~~~~~vW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~----~---~~~ 321 (358)
+++.. ......+.||..+..+. +..|..+.++....- ....+.+ ..+|+.++... + .+.
T Consensus 384 ~~~s~-----~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-----~~~~v~~---~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 384 VWSTS-----HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-----GSLFIKT---HPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp EEEEE-----BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEEC---CTTCCEEEECCTTCSSHHHHTC
T ss_pred EEEec-----cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-----CceEEEc---CCCCCcEEEecCCCCCcccCce
Confidence 65554 22346899999875221 134999999886431 1233445 55666444332 1 236
Q ss_pred EEEEECCCCeEE
Q 040165 322 FISCNLNERTLE 333 (358)
Q Consensus 322 l~~yd~~t~~~~ 333 (358)
+.+||.+|.+..
T Consensus 451 v~v~d~~~~~~~ 462 (543)
T 1nir_A 451 VAVFDLKNLDAK 462 (543)
T ss_dssp EEEEETTCTTSC
T ss_pred EEEEECCCCCCC
Confidence 999999987654
No 84
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=86.12 E-value=16 Score=31.70 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=67.3
Q ss_pred Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCC---CCC-CceEEEEE-CCeeEEEeecccccCC-CCcEEEEEE
Q 040165 200 NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEA---CHP-RSVSLGVV-GGCLSLNVCCSNCVDK-TTDFELWVM 271 (358)
Q Consensus 200 ~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P---~~~-~~~~l~~~-~g~L~lv~~~~~~~~~-~~~~~vW~l 271 (358)
+|. +|...... ..|..||+.++++..+ .++ ... ....++.. +|+..++. ... ...+.+|.+
T Consensus 221 dg~~l~v~~~~~------~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~-----~~~~~~~i~v~~~ 289 (361)
T 3scy_A 221 DGKFAYLINEIG------GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS-----NRLKADGVAIFKV 289 (361)
T ss_dssp TSSEEEEEETTT------CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE-----ECSSSCEEEEEEE
T ss_pred CCCEEEEEcCCC------CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEE-----CCCCCCEEEEEEE
Confidence 576 55444232 4788999888777554 222 211 22344444 77754444 223 468999999
Q ss_pred ccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceE--EEEECCCCeEEEe
Q 040165 272 KQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREF--ISCNLNERTLEEI 335 (358)
Q Consensus 272 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l--~~yd~~t~~~~~v 335 (358)
+.. .+.+..+..++... ...-+++ ..+|+ |++.....+.+ +.+|+++++.+.+
T Consensus 290 ~~~--~g~~~~~~~~~~g~------~~~~~~~---spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 290 DET--NGTLTKVGYQLTGI------HPRNFII---TPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp CTT--TCCEEEEEEEECSS------CCCEEEE---CTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred cCC--CCcEEEeeEecCCC------CCceEEE---CCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 742 24677777666521 1345666 66787 66655443334 4478889999887
No 85
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=86.05 E-value=25 Score=33.86 Aligned_cols=122 Identities=13% Similarity=0.112 Sum_probs=64.5
Q ss_pred CCceEEEEcccccce-eccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAH-KKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~-~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
....+...+.-++.. ..+|.... ....++.+|+..+. |.+.-.....+..++......+.+-. ...
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~----~~~~~l~~d~~~~~--lywtD~~~~~I~r~~~~g~~~~~v~~-------~g~ 79 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGV----KEASALDFDVTDNR--IYWTDISLKTISRAFMNGSALEHVVE-------FGL 79 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSC----SCEEEEEEETTTTE--EEEEETTTTEEEEEETTSCSCEEEEC-------SSC
T ss_pred eCCcEEEEECCCCCcceEEEcCCC----CceEEEEEECCCCE--EEEEECCCCeEEEEECCCCCcEEEEe-------CCC
Confidence 344455555555433 23333221 12678889987764 33322234566667766554444322 111
Q ss_pred CCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEe
Q 040165 191 ESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNV 254 (358)
Q Consensus 191 ~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~ 254 (358)
....++.+ +|.|||..... ..|..+|+....-..+ .-... .-..|+.. +|.||...
T Consensus 80 -~~P~GlAvD~~~~~LY~tD~~~------~~I~v~~~dG~~~~~l~~~~l~-~P~~iavdp~~G~lY~tD 141 (628)
T 4a0p_A 80 -DYPEGMAVDWLGKNLYWADTGT------NRIEVSKLDGQHRQVLVWKDLD-SPRALALDPAEGFMYWTE 141 (628)
T ss_dssp -SCCCEEEEETTTTEEEEEETTT------TEEEEEETTSTTCEEEECSSCC-CEEEEEEETTTTEEEEEE
T ss_pred -CCcceEEEEeCCCEEEEEECCC------CEEEEEecCCCcEEEEEeCCCC-CcccEEEccCCCeEEEeC
Confidence 12344544 58999986653 5899999976543333 21121 12345554 78887765
No 86
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.45 E-value=29 Score=33.98 Aligned_cols=196 Identities=8% Similarity=-0.030 Sum_probs=99.7
Q ss_pred EEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC-ceEe
Q 040165 99 IGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF-SWRD 177 (358)
Q Consensus 99 ~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~-~W~~ 177 (358)
.-+.+|-.+........+.|||..+++....-..+. .....+.+.+... + ++.. .....+.+|+..++ ....
T Consensus 62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~v~~~~~s~~~~-~-l~~~-~~dg~i~vw~~~~~~~~~~ 134 (814)
T 3mkq_A 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTKP-Y-VLSG-SDDLTVKLWNWENNWALEQ 134 (814)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSS-E-EEEE-ETTSEEEEEEGGGTSEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC----CCEEEEEEeCCCC-E-EEEE-cCCCEEEEEECCCCceEEE
Confidence 334455443332467889999998887654322111 1144456666533 3 2222 34567889988765 2222
Q ss_pred cccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE---CCee
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV---GGCL 250 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~---~g~L 250 (358)
.-. . ....-.++.+ +|.....+... ..|..+|+.+.+-... ..+.......+.-. +|.+
T Consensus 135 ~~~-------~-~~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 135 TFE-------G-HEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp EEE-------C-CSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred EEc-------C-CCCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence 111 0 0011122332 45554444443 4789999876543222 22211111222222 6666
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
.+++ .....+.+|.++. . ..+..+... ......+++ ..+|.+++.....+.+..||+.++
T Consensus 201 l~~~------~~dg~i~~~d~~~----~--~~~~~~~~~-----~~~v~~~~~---~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 201 MITA------SDDLTIKIWDYQT----K--SCVATLEGH-----MSNVSFAVF---HPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp EEEE------CTTSEEEEEETTT----T--EEEEEEECC-----SSCEEEEEE---CSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEE------eCCCEEEEEECCC----C--cEEEEEcCC-----CCCEEEEEE---cCCCCEEEEEeCCCeEEEEECCCC
Confidence 6665 2346899998764 1 233333321 112445555 556775555443335999999987
Q ss_pred eEEEe
Q 040165 331 TLEEI 335 (358)
Q Consensus 331 ~~~~v 335 (358)
+....
T Consensus 261 ~~~~~ 265 (814)
T 3mkq_A 261 KVEKT 265 (814)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 65544
No 87
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=85.13 E-value=16 Score=30.82 Aligned_cols=191 Identities=11% Similarity=0.031 Sum_probs=94.5
Q ss_pred ecceEEEEEeCCceEEEEcccccceec-cCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC--ceEec
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKK-LPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF--SWRDV 178 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~--~W~~~ 178 (358)
..|-+++.......++++|+.|++... ++...... ......++.. +.-+ . ....+..|+. ++ .|+--
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~----~~~~~~~pdG-~ilv-s---~~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWE----CNSVAATKAG-EILF-S---YSKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCC----CCEEEECTTS-CEEE-E---CBSEEEEECT-TSCEEEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCC----CcCeEECCCC-CEEE-e---CCCCEEEECC-CCCEEEEEc
Confidence 334444442466788899998887643 33221000 1122334433 2222 1 3456888888 55 47643
Q ss_pred ccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC--CCC---CceEEE-EECCeeEE
Q 040165 179 HYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA--CHP---RSVSLG-VVGGCLSL 252 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P--~~~---~~~~l~-~~~g~L~l 252 (358)
.. .... .......-||.++...... ...++.||...+.-..+.+. ... ....+. ..+|.+.+
T Consensus 73 ~~-----~~~~--~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv 140 (276)
T 3no2_A 73 AP-----AGCE--MQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV 140 (276)
T ss_dssp CC-----TTCE--EEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE
T ss_pred CC-----CCcc--ccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEE
Confidence 21 0000 0112234577776665441 14788899865533333322 100 111122 23777665
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
+. . ....+.+|..+ + +..|+... +.. .....+ ..+|++++...+..+++.+|++|++.
T Consensus 141 ~~-----~-~~~~v~~~d~~--G-~~~w~~~~--~~~--------~~~~~~---~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 141 PL-----F-ATSEVREIAPN--G-QLLNSVKL--SGT--------PFSSAF---LDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EE-----T-TTTEEEEECTT--S-CEEEEEEC--SSC--------CCEEEE---CTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred Ee-----c-CCCEEEEECCC--C-CEEEEEEC--CCC--------ccceeE---cCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 55 2 33456555543 2 24565332 111 112333 45788777666554699999998876
Q ss_pred EEee
Q 040165 333 EEIY 336 (358)
Q Consensus 333 ~~v~ 336 (358)
.+-+
T Consensus 199 ~w~~ 202 (276)
T 3no2_A 199 VRRV 202 (276)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 88
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=84.89 E-value=18 Score=31.03 Aligned_cols=196 Identities=10% Similarity=0.009 Sum_probs=94.3
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceE-ecccccccccccccC
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWR-DVHYNLGVKLFYGTE 191 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~-~~~~~~~~~~~~~~~ 191 (358)
...+.++|+.|++....-+.... ...+.+++..+ +..+.- .....+.+++..+++-. .+....+. -+....
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~-~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~ 139 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQ-TLWFGN-TVNSAVTAIDAKTGEVKGRLVLDDRK-RTEEVR 139 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTT-EEEEEE-TTTTEEEEEETTTCCEEEEEESCCCC-CCSSCC
T ss_pred CccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCC-EEEEEe-cCCCEEEEEeCCCCeeEEEEecCCCc-cccccC
Confidence 45789999998876443222111 12345556544 322222 34468899999887532 22210000 000000
Q ss_pred -CCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEE-ECCeeEEEeecccccCCCCc
Q 040165 192 -SPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGV-VGGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 192 -~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~-~~g~L~lv~~~~~~~~~~~~ 265 (358)
.....+.+ +|. +|...... ...|..+|+.+.+... ++.+... ...+.. -+|+..++. . ....
T Consensus 140 ~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~-----~-~~~~ 207 (353)
T 3vgz_A 140 PLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKM-STGLALDSEGKRLYTT-----N-ADGE 207 (353)
T ss_dssp CCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTT-CCCCEEETTTTEEEEE-----C-TTSE
T ss_pred CCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCc-cceEEECCCCCEEEEE-----c-CCCe
Confidence 00122333 555 55544332 2479999998876543 3422111 112222 255544444 1 2346
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeEEEeecc
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
+.+|.++. ......+..... +.......+++ ..+|+ +++.......+..||+++++..+....
T Consensus 208 i~~~d~~~------~~~~~~~~~~~~-~~~~~~~~~~~---s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 208 LITIDTAD------NKILSRKKLLDD-GKEHFFINISL---DTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EEEEETTT------TEEEEEEECCCS-SSCCCEEEEEE---ETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCC------CeEEEEEEcCCC-CCCcccceEEE---CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 66665543 223334443111 00111333455 44566 666665544699999998877554344
No 89
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=84.85 E-value=19 Score=31.20 Aligned_cols=194 Identities=11% Similarity=0.075 Sum_probs=96.8
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc--eEec
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS--WRDV 178 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~--W~~~ 178 (358)
+.+|-+++....+..+.|||..+++....-+.+. .....+.+.+.. .+-+.+ .....+.+|+..++. .+..
T Consensus 64 s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~----~~v~~~~~s~~~-~~l~s~--~~d~~v~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 64 GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS----SWVMTCAYAPSG-NYVACG--GLDNICSIYNLKTREGNVRVS 136 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS----SCEEEEEECTTS-SEEEEE--ETTCEEEEEETTTCSBSCEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC----ccEEEEEECCCC-CEEEEE--eCCCeEEEEECccCCCcceeE
Confidence 3445444443467788899988776543222211 114455666643 343333 345678899887642 2221
Q ss_pred ccccccccccccCCCCceEE-ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEEEee
Q 040165 179 HYNLGVKLFYGTESPPKGCL-FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSLNVC 255 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~lv~~ 255 (358)
.. +......-....+ -+|.+. .... ...|..+|+.+++.... ..... ....+... +|++.+.+.
T Consensus 137 ~~-----~~~h~~~v~~~~~~~~~~l~--s~s~-----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 137 RE-----LAGHTGYLSCCRFLDDNQIV--TSSG-----DTTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp EE-----EECCSSCEEEEEEEETTEEE--EEET-----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEE
T ss_pred EE-----ecCCCccEEEEEECCCCcEE--EEEC-----CCcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEe
Confidence 11 1100000011111 244432 2222 14788999988764332 21111 12233333 666666552
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEE
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~ 334 (358)
....+.+|.+... ..+..+.. +......+++ ..+|+.++.....+.+..||+++++...
T Consensus 204 ------~d~~v~~wd~~~~------~~~~~~~~-----h~~~v~~v~~---~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 204 ------CDASAKLWDVREG------MCRQTFTG-----HESDINAICF---FPNGNAFATGSDDATCRLFDLRADQELM 262 (340)
T ss_dssp ------TTSCEEEEETTTC------SEEEEECC-----CSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ------CCCcEEEEECCCC------eeEEEEcC-----CcCCEEEEEE---cCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 3468999987651 12233322 1122455555 5567766555444459999998876443
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=84.55 E-value=22 Score=31.89 Aligned_cols=185 Identities=10% Similarity=0.076 Sum_probs=92.2
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNL 182 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~ 182 (358)
+|-+++....++.+.|+|..+++....-..+. .....+.+++ .+ ++.. .....+.+|+..++.-.....
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~---~~-l~s~-s~dg~i~vwd~~~~~~~~~~~-- 250 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC----EAVLHLRFNN---GM-MVTC-SKDRSIAVWDMASPTDITLRR-- 250 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCC----SCEEEEECCT---TE-EEEE-ETTSCEEEEECSSSSCCEEEE--
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC----CcEEEEEEcC---CE-EEEe-eCCCcEEEEeCCCCCCceeee--
Confidence 44444443567789999998887643322111 1133444432 33 3332 355678888887754211100
Q ss_pred ccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEECCeeEEEeecccccC
Q 040165 183 GVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVVGGCLSLNVCCSNCVD 261 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~ 261 (358)
........-.++..+|.....+... ..|..+|+.+.+... +.... ..+.....+|.+.+.+.
T Consensus 251 ---~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~g~------ 313 (435)
T 1p22_A 251 ---VLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLNGHK--RGIACLQYRDRLVVSGS------ 313 (435)
T ss_dssp ---EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEECCS--SCEEEEEEETTEEEEEE------
T ss_pred ---EecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEcCCC--CcEEEEEeCCCEEEEEe------
Confidence 0001111123445577665555543 489999998875432 22221 12222333566555552
Q ss_pred CCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 262 KTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 262 ~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
....+.+|.++.. ..+..+.... ..+.++ .-+++.++.....+.+..||+++++
T Consensus 314 ~dg~i~iwd~~~~------~~~~~~~~h~-------~~v~~~---~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 314 SDNTIRLWDIECG------ACLRVLEGHE-------ELVRCI---RFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TTSCEEEEETTTC------CEEEEECCCS-------SCEEEE---ECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCCeEEEEECCCC------CEEEEEeCCc-------CcEEEE---EecCCEEEEEeCCCcEEEEECCCCC
Confidence 3468999988651 2333343221 122333 1255544444333358888876543
No 91
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=84.53 E-value=28 Score=33.06 Aligned_cols=197 Identities=12% Similarity=-0.032 Sum_probs=105.3
Q ss_pred cceEEEEEeCCceEEEEcccccceec-cCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKK-LPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYN 181 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~ 181 (358)
++++.+.......+.|+|+.|++... ++.... ..++.+++.. +|-.+. .....+.+|+..+.+-+.+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~------p~~v~~SpDG-r~lyv~--~~dg~V~viD~~~~t~~~v~~- 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA------VHISRLSASG-RYLFVI--GRDGKVNMIDLWMKEPTTVAE- 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC------EEEEEECTTS-CEEEEE--ETTSEEEEEETTSSSCCEEEE-
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC------ccceEECCCC-CEEEEE--cCCCeEEEEECCCCCCcEeEE-
Confidence 34555543467889999999987653 442211 2356666654 443333 244578999985222223222
Q ss_pred cccccccccCCCCceEEE-----Cce-EEEEeecCCCCCCCcEEEEEECCCCeeE-EecCC---CC------C-CceEEE
Q 040165 182 LGVKLFYGTESPPKGCLF-----NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEA---CH------P-RSVSLG 244 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~-----~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P---~~------~-~~~~l~ 244 (358)
++.+. .....++. +|+ +|...... ..+..+|..+.+-. .|+.. .+ + ....+.
T Consensus 236 ----i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~------~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 236 ----IKIGS-EARSIETSKMEGWEDKYAIAGAYWP------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp ----EECCS-EEEEEEECCSTTCTTTEEEEEEEET------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred ----EecCC-CCceeEEccccCCCCCEEEEEEccC------CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 22211 11122233 575 55555543 58899998875543 34543 11 1 112333
Q ss_pred EE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceE
Q 040165 245 VV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREF 322 (358)
Q Consensus 245 ~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l 322 (358)
.. ++..+++. ..... .||..+-.. ....++..|+.... ....++ ..+|+ +++.....+.+
T Consensus 305 ~s~~~~~~vv~-----~~~~g--~v~~vd~~~--~~~~~v~~i~~~~~------~~d~~~---~pdgr~~~va~~~sn~V 366 (567)
T 1qks_A 305 ASHYRPEFIVN-----VKETG--KILLVDYTD--LNNLKTTEISAERF------LHDGGL---DGSHRYFITAANARNKL 366 (567)
T ss_dssp ECSSSSEEEEE-----ETTTT--EEEEEETTC--SSEEEEEEEECCSS------EEEEEE---CTTSCEEEEEEGGGTEE
T ss_pred EcCCCCEEEEE-----ecCCC--eEEEEecCC--Cccceeeeeecccc------ccCceE---CCCCCEEEEEeCCCCeE
Confidence 33 44555555 22234 345554321 34556666765432 345566 56677 55555555579
Q ss_pred EEEECCCCeEEEeecc
Q 040165 323 ISCNLNERTLEEIYRP 338 (358)
Q Consensus 323 ~~yd~~t~~~~~v~~~ 338 (358)
.++|.+|++......+
T Consensus 367 ~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 367 VVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCcEEEEEec
Confidence 9999999987654355
No 92
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=84.43 E-value=23 Score=31.87 Aligned_cols=183 Identities=11% Similarity=0.083 Sum_probs=95.4
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE--ccceEEEEEEcCCCceEecccccccccccccC
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS--CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~--~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
..+.++|..++....+..... ....+.+.|..+ +++... .....+.+++..+++-+.+.. .+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~-----~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~~~~l~~-----~~~--- 223 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQVAS-----FPR--- 223 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESS-----CEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCEEEEEC-----CSS---
T ss_pred ceEEEEcCCCCCCEEEeCCCC-----cceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCcEEEeec-----CCC---
Confidence 678899987766555533221 144556666544 233332 223689999999987765543 111
Q ss_pred CCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEE
Q 040165 192 SPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 192 ~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~ 267 (358)
...++.+ +|. |.+...... ...|..+|+.+.+...+.... .....+.-. +|+..++.. ......+
T Consensus 224 -~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~l~~~s-----~~~g~~~ 292 (415)
T 2hqs_A 224 -HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAFTS-----DQAGRPQ 292 (415)
T ss_dssp -CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCS-SCEEEEEECTTSSEEEEEE-----CTTSSCE
T ss_pred -cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCC-CcccceEECCCCCEEEEEE-----CCCCCcE
Confidence 1112222 565 444443221 247999999987765442211 112223333 777545442 2233456
Q ss_pred EEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcC--cceEEEEECCCCeEEEe
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINK--WREFISCNLNERTLEEI 335 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~--~~~l~~yd~~t~~~~~v 335 (358)
||.++-.+ +. ...+... .......++ ..+|+ |++...+ ...++.+|+++++.+.+
T Consensus 293 i~~~d~~~--~~---~~~l~~~-----~~~~~~~~~---spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 293 VYKVNING--GA---PQRITWE-----GSQNQDADV---SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 350 (415)
T ss_dssp EEEEETTS--SC---CEECCCS-----SSEEEEEEE---CTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred EEEEECCC--CC---EEEEecC-----CCcccCeEE---CCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence 77666422 22 1122211 112333455 56777 5555432 12599999999988776
No 93
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=84.17 E-value=20 Score=30.95 Aligned_cols=120 Identities=7% Similarity=-0.027 Sum_probs=64.9
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCC--eeEEecCC----C-CC---CceEEEEE--CCeeEEEeecccccCCCCcEE
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRVGEA----C-HP---RSVSLGVV--GGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~P----~-~~---~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~ 267 (358)
+|.+|+..... ..|..||+..+ ....+.-+ . .. .-..++.. +|.|++.. ......+.
T Consensus 101 ~g~l~v~d~~~------~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d-----~~~~~~I~ 169 (329)
T 3fvz_A 101 DGNYWVTDVAL------HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD-----GYCNSRIV 169 (329)
T ss_dssp TSCEEEEETTT------TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE-----CSSCCEEE
T ss_pred CCCEEEEECCC------CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe-----CCCCCeEE
Confidence 68888765543 58999998766 34444322 1 11 22355654 68888876 21245666
Q ss_pred EEEEccCCCCCceeEEEEeecCC-ccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDI-MVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
+|..+ +.......-.-.. .........|.++.++.++|.||+.......+..||++++++...
T Consensus 170 ~~~~~-----g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 170 QFSPS-----GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp EECTT-----SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEcCC-----CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 66522 2222221111000 000011234555544454578999887766799999997766544
No 94
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=84.00 E-value=2.9 Score=41.10 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=27.7
Q ss_pred ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEE--ECCeeEEEe
Q 040165 199 FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGV--VGGCLSLNV 254 (358)
Q Consensus 199 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~--~~g~L~lv~ 254 (358)
.+|.|||..... ..|..+|+....-..+ ...... -..|++ .+|.||+..
T Consensus 463 ~~g~LY~tD~~~------~~I~v~d~dg~~~~~l~~~~~~~-P~giavDp~~g~ly~td 514 (699)
T 1n7d_A 463 IHSNIYWTDSVL------GTVSVADTKGVKRKTLFREQGSK-PRAIVVDPVHGFMYWTD 514 (699)
T ss_dssp SSSBCEECCTTT------SCEEEEBSSSCCEEEECCCSSCC-CCCEECCSSSSCCEECC
T ss_pred eCCcEEEEeccC------CeEEEEecCCCceEEEEeCCCCC-cceEEEccCCCcEEEcc
Confidence 368999976543 4789999887654443 222211 112333 356776654
No 95
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.94 E-value=9.3 Score=34.60 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=60.1
Q ss_pred ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCe-eEEEeecccccCCCCcEEEEEEccCCC
Q 040165 199 FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGC-LSLNVCCSNCVDKTTDFELWVMKQYGV 276 (358)
Q Consensus 199 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~ 276 (358)
-+|.|||..... ..|..+|+.+.+...+........ ++.. +|+ |++.. . ... -.||.++..
T Consensus 140 ~~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d-----~-~~~-~~I~~~d~~-- 202 (409)
T 3hrp_A 140 GNNTVLAYQRDD------PRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIG-----W-EGT-HTVYVYMKA-- 202 (409)
T ss_dssp STTEEEEEETTT------TEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEB-----S-STT-CEEEEEEGG--
T ss_pred CCCCEEEEecCC------CcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEe-----c-CCC-ceEEEEEcC--
Confidence 368999987653 589999999887766532221112 3332 454 44443 1 221 156776652
Q ss_pred CCcee--EEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 277 HSSWE--RLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 277 ~~~W~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..|. ....+..... .....+++ +..+|.||+... ...++.||++++..+.+
T Consensus 203 -~~~~~~~~g~~~~~~~----~~p~~iav--~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 203 -SGWAPTRIGQLGSTFS----GKIGAVAL--DETEEWLYFVDS-NKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp -GTTCEEEEEECCTTSC----SCCCBCEE--CTTSSEEEEECT-TCEEEEEETTTCCEEEE
T ss_pred -CCceeEEeeeccchhc----CCcEEEEE--eCCCCeEEEEEC-CCcEEEEECCCCCEEEE
Confidence 2343 2212211111 11233444 344677888544 33599999998876554
No 96
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=83.59 E-value=20 Score=30.49 Aligned_cols=195 Identities=9% Similarity=-0.044 Sum_probs=91.5
Q ss_pred ceEEEEccc--ccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEeccccccccccccc
Q 040165 114 KDFFIYNPS--TRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNLGVKLFYGT 190 (358)
Q Consensus 114 ~~~~V~NP~--T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~~~~~ 190 (358)
..+.+++.- +++...+...+... . ...+.+++..+ +-++.. .....+.+|+..++. .+.... .+...
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~s~dg~-~l~~~~-~~~~~i~~~d~~~~~~~~~~~~-----~~~~~ 129 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPG-S--LTHISTDHQGQ-FVFVGS-YNAGNVSVTRLEDGLPVGVVDV-----VEGLD 129 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSS-C--CSEEEECTTSS-EEEEEE-TTTTEEEEEEEETTEEEEEEEE-----ECCCT
T ss_pred CeEEEEEecCCCCceeeccccccCC-C--CcEEEEcCCCC-EEEEEe-cCCCeEEEEECCCCcccccccc-----ccCCC
Confidence 566675543 66655432222111 1 22345555543 322222 334568888874332 222221 11110
Q ss_pred CCCCceEEECce-EEEEeecCCCCCCCcEEEEEECCC-CeeEEe-----cCCCCCCceEEEEE-CCe-eEEEeecccccC
Q 040165 191 ESPPKGCLFNGA-LHWLVSGFHFGSQDPVIIAFDLAE-EKFCRV-----GEACHPRSVSLGVV-GGC-LSLNVCCSNCVD 261 (358)
Q Consensus 191 ~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~-~~~~~i-----~~P~~~~~~~l~~~-~g~-L~lv~~~~~~~~ 261 (358)
....-.+.-+|. +|...... ..|..||+.+ ++...+ ..+.......+... +|+ |++.. .
T Consensus 130 ~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~------~ 197 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN------E 197 (343)
T ss_dssp TBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE------T
T ss_pred CceEEEECCCCCEEEEecCCC------CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe------C
Confidence 011112223564 54443232 4799999987 666532 23322112233333 676 44444 2
Q ss_pred CCCcEEEEEEccCCCCCceeEEEEeecCCcc-ccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECC--CCeEEEe
Q 040165 262 KTTDFELWVMKQYGVHSSWERLTKIDNDIMV-RYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLN--ERTLEEI 335 (358)
Q Consensus 262 ~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~--t~~~~~v 335 (358)
....+.+|.++... +.+.....+...... ........+++ ..+|+ |++.....+.+..||++ +++.+.+
T Consensus 198 ~~~~i~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~~---s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 198 LNSSVDVWELKDPH--GNIECVQTLDMMPENFSDTRWAADIHI---TPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp TTTEEEEEESSCTT--SCCEEEEEEECSCTTCCSCCCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred CCCEEEEEEecCCC--CcEEEEeeccccCccccccCCccceEE---CCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 35689999986422 455544444321110 00111233555 55676 55555444459999988 5666665
No 97
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=83.24 E-value=19 Score=30.03 Aligned_cols=190 Identities=10% Similarity=0.185 Sum_probs=97.2
Q ss_pred eecceEEEEEeC-CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 101 SCNGLVCMALHG-CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 101 s~~Gll~~~~~~-~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
..+|.+.+.... ...+.++|+..+....+..... ....++.+|+.. ..- ........+.+|+.....-+...
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~----~~~~~i~~~~~g-~l~--v~~~~~~~i~~~~~~g~~~~~~~ 158 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATIL----QHPRGVTVDNKG-RII--VVECKVMRVIIFDQNGNVLHKFG 158 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTC----SCEEEEEECTTS-CEE--EEETTTTEEEEECTTSCEEEEEE
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccC----CCceEEEEeCCC-CEE--EEECCCCEEEEEcCCCCEEEEeC
Confidence 457777666222 6778899965544444432211 114456677754 222 22133457888886544333332
Q ss_pred cccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCC-CCceEEEEE-CCeeEEEee
Q 040165 180 YNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACH-PRSVSLGVV-GGCLSLNVC 255 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~-~~~~~l~~~-~g~L~lv~~ 255 (358)
. +... ....++.+ +|.+|+..... ..|..||...+....+..+.. ..-..++.. +|+|++..
T Consensus 159 ~------~~~~-~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~- 224 (286)
T 1q7f_A 159 C------SKHL-EFPNGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIAD- 224 (286)
T ss_dssp C------TTTC-SSEEEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEE-
T ss_pred C------CCcc-CCcEEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEe-
Confidence 1 0000 11223443 47877655443 489999997766555543311 122345553 78888887
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCC
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNE 329 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t 329 (358)
......+.+|..+ ..- +..+....- ......+++ ..+|++++...+. .+..|+...
T Consensus 225 ----~~~~~~i~~~~~~-----g~~--~~~~~~~~~---~~~~~~i~~---~~~g~l~vs~~~~-~v~v~~~~~ 280 (286)
T 1q7f_A 225 ----NHNNFNLTIFTQD-----GQL--ISALESKVK---HAQCFDVAL---MDDGSVVLASKDY-RLYIYRYVQ 280 (286)
T ss_dssp ----CSSSCEEEEECTT-----SCE--EEEEEESSC---CSCEEEEEE---ETTTEEEEEETTT-EEEEEECSC
T ss_pred ----CCCCEEEEEECCC-----CCE--EEEEcccCC---CCcceeEEE---CCCCcEEEECCCC-eEEEEEccc
Confidence 2222377777532 122 222322110 011233444 5578888876543 588887754
No 98
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=83.11 E-value=23 Score=30.96 Aligned_cols=197 Identities=8% Similarity=-0.087 Sum_probs=89.4
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|.++.. ...+.+.|||..+++..................+.+.|.. ++-+.+ .....+.+++..+++-...-.
T Consensus 103 s~d~~~l~~-s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sg--s~dg~v~iwd~~~~~~~~~~~ 178 (357)
T 4g56_B 103 VSEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSG--GKDFSVKVWDLSQKAVLKSYN 178 (357)
T ss_dssp ETTTEEEEE-ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEE--ETTSCEEEEETTTTEEEEEEC
T ss_pred cCCCCEEEE-ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEE--eCCCeEEEEECCCCcEEEEEc
Confidence 344555444 3667889999998876554332211111124455666643 333333 345678889888775322111
Q ss_pred ccccccccccCCCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCC-CceEEEEE--CCeeEEE
Q 040165 181 NLGVKLFYGTESPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHP-RSVSLGVV--GGCLSLN 253 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~-~~~~l~~~--~g~L~lv 253 (358)
. ....-.++.+ +|. +...+... ..|..+|+.+.+-.. +...... ....+.-. ++.+.+.
T Consensus 179 -------~-h~~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 179 -------A-HSSEVNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp -------C-CSSCEEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred -------C-CCCCEEEEEEccCCCceeeeeccC------CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence 0 0001112222 232 22223322 368888888765322 2222222 12233332 3455544
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCC-cEEEEEcCcceEEEEECCCCeE
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGG-DEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
+ .....+.+|.+.... .+..+.. .......+++ ..+| .++......+.+..+|+++++.
T Consensus 245 g------~~d~~i~~wd~~~~~------~~~~~~~-----~~~~v~~l~~---sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 245 G------DETGNVSLVNIKNPD------SAQTSAV-----HSQNITGLAY---SYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp E------ESSSCEEEEESSCGG------GCEEECC-----CSSCEEEEEE---CSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred e------ecccceeEEECCCCc------EeEEEec-----cceeEEEEEE---cCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 4 134679999876521 1222221 1122444555 4444 4555443333599999999877
Q ss_pred EEe
Q 040165 333 EEI 335 (358)
Q Consensus 333 ~~v 335 (358)
.+.
T Consensus 305 ~~~ 307 (357)
T 4g56_B 305 FRD 307 (357)
T ss_dssp EEE
T ss_pred eEE
Confidence 655
No 99
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=82.83 E-value=19 Score=29.83 Aligned_cols=197 Identities=13% Similarity=0.026 Sum_probs=101.6
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
.++..+|.|.........+.++++.++....+-.... ....++.+|+..+...+.- .....+.+++.....-+.
T Consensus 42 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~----~~p~~ia~d~~~~~lyv~d--~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL----GSPEGIALDHLGRTIFWTD--SQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC----CCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEE
T ss_pred EEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC----CCccEEEEEecCCeEEEEE--CCCCEEEEEEcCCCCEEE
Confidence 3344567776663356778888887765433321111 1245677787655332222 344577888876543222
Q ss_pred cccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeE
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLS 251 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~ 251 (358)
+.. ... ....++.+ +|.+||...... ...|..+++....-..+ ..+.. .-..++.. +++||
T Consensus 116 ~~~-------~~~-~~P~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~~~~~~~-~P~gia~d~~~~~ly 182 (267)
T 1npe_A 116 LFD-------TGL-VNPRGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQDNLG-LPNGLTFDAFSSQLC 182 (267)
T ss_dssp EEC-------SSC-SSEEEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEEECTTCS-CEEEEEEETTTTEEE
T ss_pred EEE-------CCC-CCccEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEEEECCCC-CCcEEEEcCCCCEEE
Confidence 211 111 11223333 689999875421 14788898876544433 22221 12234443 56788
Q ss_pred EEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 252 LNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 252 lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
+.. . ....+.+..++. . .....++. . ..|.++. ..++.||+.....+.+..+|+++++
T Consensus 183 v~d-----~-~~~~I~~~~~~g----~--~~~~~~~~--~------~~P~gi~--~d~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 183 WVD-----A-GTHRAECLNPAQ----P--GRRKVLEG--L------QYPFAVT--SYGKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEE-----T-TTTEEEEEETTE----E--EEEEEEEC--C------CSEEEEE--EETTEEEEEETTTTEEEEEETTTTE
T ss_pred EEE-----C-CCCEEEEEecCC----C--ceEEEecC--C------CCceEEE--EeCCEEEEEECCCCeEEEEeCCCCC
Confidence 776 2 334454444332 1 11112221 1 2344442 2246688887665579999999887
Q ss_pred EEEe
Q 040165 332 LEEI 335 (358)
Q Consensus 332 ~~~v 335 (358)
....
T Consensus 241 ~~~~ 244 (267)
T 1npe_A 241 EMDT 244 (267)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 6443
No 100
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=82.63 E-value=20 Score=30.14 Aligned_cols=111 Identities=12% Similarity=-0.009 Sum_probs=61.7
Q ss_pred Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEE-ECCeeEEEeecccccCCCCcEEEEEEccCCCC
Q 040165 200 NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGV-VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVH 277 (358)
Q Consensus 200 ~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~-~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~ 277 (358)
+|. +||..... ..|..||+.++ .+.+..|... ...++. .+|+|++.. . ....+.+|..++
T Consensus 38 ~g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~~~~~-~~~l~~~~dg~l~v~~-----~-~~~~i~~~d~~~---- 99 (296)
T 3e5z_A 38 ARSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMHPSHH-QNGHCLNKQGHLIACS-----H-GLRRLERQREPG---- 99 (296)
T ss_dssp GGTEEEEEEGGG------TEEEEEETTSC-EEEEESSCSS-EEEEEECTTCCEEEEE-----T-TTTEEEEECSTT----
T ss_pred CCCEEEEEeCCC------CEEEEEECCCC-eEEEECCCCC-cceeeECCCCcEEEEe-----c-CCCeEEEEcCCC----
Confidence 565 99998764 58999999998 7666555321 223444 378887665 2 234566665433
Q ss_pred CceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc-----------------CcceEEEEECCCCeEEEe
Q 040165 278 SSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN-----------------KWREFISCNLNERTLEEI 335 (358)
Q Consensus 278 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-----------------~~~~l~~yd~~t~~~~~v 335 (358)
++........... ......-+++ ..+|++++... ....++.||++ ++.+.+
T Consensus 100 g~~~~~~~~~~~~---~~~~~~~i~~---d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (296)
T 3e5z_A 100 GEWESIADSFEGK---KLNSPNDVCL---APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP 167 (296)
T ss_dssp CCEEEEECEETTE---ECCCCCCEEE---CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred CcEEEEeeccCCC---CCCCCCCEEE---CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence 3343322111110 0011233555 56788888532 11248899988 666554
No 101
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=81.97 E-value=42 Score=33.13 Aligned_cols=194 Identities=10% Similarity=0.074 Sum_probs=102.6
Q ss_pred ecce-EEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 102 CNGL-VCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 102 ~~Gl-l~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
.+|- |-+. ....-++++||.|++...++.............+..|+... +.+... ..+.+|+..+++|+....
T Consensus 415 ~~g~~lWig-t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~----lwigt~-~Gl~~~~~~~~~~~~~~~ 488 (795)
T 4a2l_A 415 EKKSLVYIG-THAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN----LWLGTL-SALVRFNPEQRSFTTIEK 488 (795)
T ss_dssp TTTTEEEEE-ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC----EEEEES-SCEEEEETTTTEEEECCB
T ss_pred CCCCEEEEE-eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC----EEEEec-CceeEEeCCCCeEEEccc
Confidence 3554 4443 34456888999998887765422111112244455555322 222222 568889999999987653
Q ss_pred ccccccccccCC-CCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEec-C-C---C-CCCceEEEE-ECCee
Q 040165 181 NLGVKLFYGTES-PPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-E-A---C-HPRSVSLGV-VGGCL 250 (358)
Q Consensus 181 ~~~~~~~~~~~~-~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~-P---~-~~~~~~l~~-~~g~L 250 (358)
.. .+..... .-.+++. +|.+ |++..+ .+..||..++++ .+. . . . ......+.+ .+|.|
T Consensus 489 ~~---~~~~~~~~~i~~i~~d~~g~l-Wigt~~-------Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~l 556 (795)
T 4a2l_A 489 EK---DGTPVVSKQITTLFRDSHKRL-WIGGEE-------GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGII 556 (795)
T ss_dssp CT---TCCBCCCCCEEEEEECTTCCE-EEEESS-------CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred cc---cccccCCceEEEEEECCCCCE-EEEeCC-------ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence 10 0111100 1122332 4554 555443 688999998888 432 1 1 1 112344555 37888
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC-ccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI-MVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNE 329 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t 329 (358)
.+.+ . . -+ +.++.. ...+.. ..... ++. .....+.. ..+|+|++..... +..||+++
T Consensus 557 WigT-----~--~-Gl--~~~d~~--~~~~~~---~~~~~gl~~--~~i~~i~~---d~~g~lWi~t~~G--l~~~~~~~ 614 (795)
T 4a2l_A 557 WVGT-----R--E-GF--YCFNEK--DKQIKR---YNTTNGLPN--NVVYGILE---DSFGRLWLSTNRG--ISCFNPET 614 (795)
T ss_dssp EEEE-----S--S-CE--EEEETT--TTEEEE---ECGGGTCSC--SCEEEEEE---CTTSCEEEEETTE--EEEEETTT
T ss_pred EEEe-----C--C-Cc--eeECCC--CCcEEE---eCCCCCCch--hheEEEEE---CCCCCEEEEcCCc--eEEEcCCC
Confidence 8887 2 1 34 344331 133432 22111 111 11233333 4567798887654 99999999
Q ss_pred CeEEEe
Q 040165 330 RTLEEI 335 (358)
Q Consensus 330 ~~~~~v 335 (358)
++++.+
T Consensus 615 ~~~~~~ 620 (795)
T 4a2l_A 615 EKFRNF 620 (795)
T ss_dssp TEEEEE
T ss_pred CcEEEc
Confidence 999876
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=81.60 E-value=27 Score=30.78 Aligned_cols=202 Identities=10% Similarity=0.018 Sum_probs=101.0
Q ss_pred eecc-eEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 101 SCNG-LVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 101 s~~G-ll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
+-+| -+++....+..+.|||..+++....-.... .......+.+.+.. .+-+.+ .....+.+|+.++++-...-
T Consensus 140 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~--~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV--HPDTIYSVDWSRDG-ALICTS--CRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT--CCSCEEEEEECTTS-SCEEEE--ETTSEEEEEETTTTEEEEEE
T ss_pred CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC--CCCceEEEEECCCC-CEEEEE--ecCCcEEEEeCCCCceeeee
Confidence 3344 344433467788999998877643221000 01124556677743 333333 34568999999887532211
Q ss_pred -cccccccccccCCCCceEE-ECceEEEEeecCCCCCCCcEEEEEECCCCee--EEecCCCCCCceEEEEE-CCeeEEEe
Q 040165 180 -YNLGVKLFYGTESPPKGCL-FNGALHWLVSGFHFGSQDPVIIAFDLAEEKF--CRVGEACHPRSVSLGVV-GGCLSLNV 254 (358)
Q Consensus 180 -~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~--~~i~~P~~~~~~~l~~~-~g~L~lv~ 254 (358)
. ..... .....++ -+|.+...+.... ....|..+|+.+..- .....+.......+.-. +|+..+++
T Consensus 215 ~~-----~~~~~-~~~~~~~~~~~~~l~~g~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 285 (402)
T 2aq5_A 215 DR-----PHEGT-RPVHAVFVSEGKILTTGFSRM---SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC 285 (402)
T ss_dssp EC-----SSCSS-SCCEEEECSTTEEEEEEECTT---CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred cc-----CCCCC-cceEEEEcCCCcEEEEeccCC---CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE
Confidence 1 00000 0111112 2566555442110 025899999987432 22233322222333333 66655544
Q ss_pred ecccccCCCCcEEEEEEccCCCCCce-eEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 255 CCSNCVDKTTDFELWVMKQYGVHSSW-ERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
+ .....+.+|.++.. ..+ ......... .....+++ ..++.+++. .+. .+..|++.+++.+
T Consensus 286 g-----~~dg~i~i~d~~~~---~~~~~~l~~~~~~------~~v~~~~~---sp~~~~~~s-~~~-~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 286 G-----KGDSSIRYFEITSE---APFLHYLSMFSSK------ESQRGMGY---MPKRGLEVN-KCE-IARFYKLHERKCE 346 (402)
T ss_dssp E-----TTCSCEEEEEECSS---TTCEEEEEEECCS------SCCSEEEE---CCGGGSCGG-GTE-EEEEEEEETTEEE
T ss_pred E-----cCCCeEEEEEecCC---CcceEeecccccC------CcccceEE---eccccccee-cce-eEEEEEcCCCcEE
Confidence 2 23468999999862 222 222222211 12455666 555654443 333 4888999998888
Q ss_pred Ee
Q 040165 334 EI 335 (358)
Q Consensus 334 ~v 335 (358)
.+
T Consensus 347 ~i 348 (402)
T 2aq5_A 347 PI 348 (402)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=81.34 E-value=27 Score=30.47 Aligned_cols=199 Identities=10% Similarity=0.068 Sum_probs=93.6
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCC---------CCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPD---------ISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF 173 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~---------~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~ 173 (358)
+|-+++.......+.|||..+++........ ..........+.+.+..+.+-+.+ .....+.+|+..++
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~ 132 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS--SFDKTLKVWDTNTL 132 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE--ETTSEEEEEETTTT
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE--eCCCeEEEeeCCCC
Confidence 3433333235566777777766544332110 000111245567777555554444 34567899998887
Q ss_pred ceEecccccccccccccCCCCceEE-----ECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-
Q 040165 174 SWRDVHYNLGVKLFYGTESPPKGCL-----FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV- 246 (358)
Q Consensus 174 ~W~~~~~~~~~~~~~~~~~~~~~v~-----~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~- 246 (358)
.-..... .+.. ...+. -+|.+...+... ..|..+|+.+.+... +.... .....+...
T Consensus 133 ~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~~~~~-~~v~~~~~~~ 196 (408)
T 4a11_B 133 QTADVFN-----FEET----VYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHILQGHR-QEILAVSWSP 196 (408)
T ss_dssp EEEEEEE-----CSSC----EEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEECCCC-SCEEEEEECS
T ss_pred ccceecc-----CCCc----eeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeeecCCC-CcEEEEEECC
Confidence 5432221 0000 00111 133333333332 478888888764322 22111 112233333
Q ss_pred CCe-eEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeec----------CCccccCceeeEEEEeeecCCCcEEEE
Q 040165 247 GGC-LSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDN----------DIMVRYHGSLVTLCTATGTDGGDEIIM 315 (358)
Q Consensus 247 ~g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~----------~~~~~~~~~~~~~~~~~~~~~g~i~~~ 315 (358)
+|. +++.+ .....+.+|.+.... ... ..+.. .....+......+++ ..+|+.++.
T Consensus 197 ~~~~ll~~~------~~dg~i~i~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~ 262 (408)
T 4a11_B 197 RYDYILATA------SADSRVKLWDVRRAS--GCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCF---TSDGLHLLT 262 (408)
T ss_dssp SCTTEEEEE------ETTSCEEEEETTCSS--CCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEE---CTTSSEEEE
T ss_pred CCCcEEEEE------cCCCcEEEEECCCCC--ccc---ccccccccccceeeccccccccCceeEEEE---cCCCCEEEE
Confidence 454 44444 134679999886532 111 11110 000112233455555 556775554
Q ss_pred EcCcceEEEEECCCCeEE
Q 040165 316 INKWREFISCNLNERTLE 333 (358)
Q Consensus 316 ~~~~~~l~~yd~~t~~~~ 333 (358)
....+.+..||+++++..
T Consensus 263 ~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp EETTSCEEEEETTTCCBC
T ss_pred ecCCCeEEEEECCCCccc
Confidence 443335999999987643
No 104
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=81.25 E-value=28 Score=30.60 Aligned_cols=197 Identities=14% Similarity=0.046 Sum_probs=95.7
Q ss_pred ceEEEEEeCCceEEEEcccccc------eeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 104 GLVCMALHGCKDFFIYNPSTRA------HKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 104 Gll~~~~~~~~~~~V~NP~T~~------~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
|-+++.......+.+||..+++ ........... ......+.+.+..+.+-+.+ .....+.+|+.++++-..
T Consensus 126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISLAWNQSLAHVFASA--GSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEEEECSSCTTEEEEE--SSSSCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCccccccccccccccccCC-CCCeeEEEeCCCCCcEEEEE--cCCCCEEEEECCCCCcce
Confidence 4444443466788999998876 22211100011 11134456666544443333 355679999998875432
Q ss_pred ccccccccccccc---CCCCceEEE--Cc-eEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC-CCC-CceEEEEE--C
Q 040165 178 VHYNLGVKLFYGT---ESPPKGCLF--NG-ALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA-CHP-RSVSLGVV--G 247 (358)
Q Consensus 178 ~~~~~~~~~~~~~---~~~~~~v~~--~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P-~~~-~~~~l~~~--~ 247 (358)
.-. .+... ...-.++.+ +| .+...+..... ...|..||+.+..-....+. .+. ....+.-. +
T Consensus 203 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 203 HLS-----YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274 (416)
T ss_dssp EEC-----CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred EEe-----ccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence 211 11000 011122222 23 34444433200 01688889887531111111 111 22233332 5
Q ss_pred CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCC-cEEEEEcCcceEEEEE
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGG-DEIIMINKWREFISCN 326 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~l~~yd 326 (358)
|.+.+.+. ....+.+|.++. ...+..+.... .....+++ ..++ .+++.....+.+..||
T Consensus 275 ~~~l~s~~------~dg~v~~wd~~~------~~~~~~~~~~~-----~~v~~~~~---s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 275 EHLLLSSG------RDNTVLLWNPES------AEQLSQFPARG-----NWCFKTKF---APEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp SSCEEEEE------SSSEEEEECSSS------CCEEEEEECSS-----SCCCCEEE---CTTCTTEEEECCSSSEEEEEE
T ss_pred CCeEEEEe------CCCCEEEeeCCC------CccceeecCCC-----CceEEEEE---CCCCCCEEEEEecCCcEEEEE
Confidence 66666662 346799998764 12344444321 12344555 4555 5666655444699999
Q ss_pred CCCCe
Q 040165 327 LNERT 331 (358)
Q Consensus 327 ~~t~~ 331 (358)
+++.+
T Consensus 335 ~~~~~ 339 (416)
T 2pm9_A 335 LQNLT 339 (416)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 98765
No 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=81.06 E-value=29 Score=30.77 Aligned_cols=180 Identities=10% Similarity=-0.074 Sum_probs=88.9
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-c-----cceEEEEEEcCCCceEecccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-C-----LRVLLKVFSMKAFSWRDVHYNLGVK 185 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~-----~~~~~~vyss~t~~W~~~~~~~~~~ 185 (358)
....+.++|+.+++....-.... ....+.+++..+ +-++... . ....+.+|+..+++-.....
T Consensus 232 ~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----- 300 (433)
T 3bws_A 232 ISEDISVIDRKTKLEIRKTDKIG-----LPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----- 300 (433)
T ss_dssp TTTEEEEEETTTTEEEEECCCCS-----EEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-----
T ss_pred CCCcEEEEECCCCcEEEEecCCC-----CceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeecc-----
Confidence 46788899998877654332211 144566666543 3333221 1 24578899988875432211
Q ss_pred cccccCCCCceEE--ECce-EEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEeeccccc
Q 040165 186 LFYGTESPPKGCL--FNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVCCSNCV 260 (358)
Q Consensus 186 ~~~~~~~~~~~v~--~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~ 260 (358)
.+. ....+. -+|. +|..+... ..|..+|+.+.+... ++.. .....++.. +|+..+++......
T Consensus 301 ~~~----~~~~~~~~~~g~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 301 PPG----NKRHIVSGNTENKIYVSDMCC------SKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp EEE----CEEEEEECSSTTEEEEEETTT------TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCC
T ss_pred CCC----CcceEEECCCCCEEEEEecCC------CEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCc
Confidence 111 011122 2453 55544432 589999998765432 3322 112234443 56544444211000
Q ss_pred ---------CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCC
Q 040165 261 ---------DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNE 329 (358)
Q Consensus 261 ---------~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t 329 (358)
.....+.+|.++. ...+..+.... ....+++ ..+|+ |+......+.+..||++.
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~------~~~~~~~~~~~------~~~~~~~---s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTT------DTVKEFWEAGN------QPTGLDV---SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTT------TEEEEEEECSS------SEEEEEE---CTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccccccccceEEEEEECCC------CcEEEEecCCC------CCceEEE---cCCCCEEEEEECCCCeEEEEEecC
Confidence 0023788887653 23444444321 1344555 55677 444444233588888763
No 106
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=80.56 E-value=12 Score=36.75 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=91.6
Q ss_pred EEEeecceEEEEEeCCceEEEEcccc----cceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPST----RAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF 173 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T----~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~ 173 (358)
.+...+|.|.+.......+.++++.+ .....+-..... ...++.+|...+...+.- .....+.+++..+.
T Consensus 412 a~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~----~P~glavD~~~g~LY~tD--~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 412 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ----APDGLAVDWIHSNIYWTD--SVLGTVSVADTKGV 485 (699)
T ss_dssp EEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC------CCCEECCCSSSBCEECC--TTTSCEEEEBSSSC
T ss_pred ccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC----CcceEEEEeeCCcEEEEe--ccCCeEEEEecCCC
Confidence 34445666666522445677777764 111111111000 123455665544322211 23445677776654
Q ss_pred ceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--C
Q 040165 174 SWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--G 247 (358)
Q Consensus 174 ~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~ 247 (358)
.-+.+.. ... ....++.+ +|.|||..... ...|..+|+....-..+ ..... .-..|+.. +
T Consensus 486 ~~~~l~~-------~~~-~~P~giavDp~~g~ly~td~~~-----~~~I~~~~~dG~~~~~l~~~~l~-~PnGlavd~~~ 551 (699)
T 1n7d_A 486 KRKTLFR-------EQG-SKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLS 551 (699)
T ss_dssp CEEEECC-------CSS-CCCCCEECCSSSSCCEECCCSS-----SCCEEBCCSSSCCCCEESCSSCS-SCCCEEECTTT
T ss_pred ceEEEEe-------CCC-CCcceEEEccCCCcEEEcccCC-----CCeEEEEeCCCCCeeEEEeCCCC-CccEEEEeccC
Confidence 3333221 011 11233444 68999976432 14688888765433332 11111 11234443 6
Q ss_pred CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEEC
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNL 327 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~ 327 (358)
++||++. . ....|.+..++ +. .-..+ +..... ...|.++.+ . .+.||+.....+.|..+|.
T Consensus 552 ~~LY~aD-----~-~~~~I~~~d~d--G~--~~~~~--~~~~~~-----~~~P~glav-d-~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 552 GRLYWVD-----S-KLHSISSIDVN--GG--NRKTI--LEDEKR-----LAHPFSLAV-F-EDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp CCEEEEE-----T-TTTEEEEECSS--SS--CCEEE--CCCSSS-----CSSCCCCEE-E-TTEEEEECSTTTCEEEEET
T ss_pred CEEEEEe-----c-CCCeEEEEccC--CC--ceEEE--EecCCc-----CCCceEeEE-E-CCEEEEEeCCCCeEEEEEc
Confidence 7888876 2 33445444433 21 11111 111100 123333311 1 2457777655557999999
Q ss_pred CCCeEEEe
Q 040165 328 NERTLEEI 335 (358)
Q Consensus 328 ~t~~~~~v 335 (358)
.+++..++
T Consensus 613 ~~G~~~~~ 620 (699)
T 1n7d_A 613 LTGSDVNL 620 (699)
T ss_dssp TTEEEEEC
T ss_pred cCCCceEE
Confidence 88876655
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=80.32 E-value=30 Score=30.49 Aligned_cols=204 Identities=8% Similarity=-0.041 Sum_probs=102.3
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCC---CCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPD---ISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~---~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
+|-+++....+..+.|||..++....-...+ ..........+.+.+..+.+-+.+ .....+.+++..+++....-
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA--GCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE--ETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE--cCCCEEEEEECCCCCccEEE
Confidence 5555444356778999998887532210000 000011144566666654443333 34567899998887543221
Q ss_pred cccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEec-CC-CCCCceEEEEE-CCeeEEEe
Q 040165 180 YNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVG-EA-CHPRSVSLGVV-GGCLSLNV 254 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P-~~~~~~~l~~~-~g~L~lv~ 254 (358)
. .. .....-.++.+ +|.....+... ..|..+|+.+.+-...- .. .......+.-. +|++.+++
T Consensus 171 ~-----~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 171 G-----PD-VHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp C-----TT-TCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred e-----cC-CCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence 0 00 00011122333 56555555443 48999999987654332 22 21112333333 77766665
Q ss_pred ecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCe--
Q 040165 255 CCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERT-- 331 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~-- 331 (358)
... .....+.+|.++... .=.....++... ....+++ ..+|+ +++.....+.+..||+++++
T Consensus 239 ~~~---~~d~~i~iwd~~~~~---~~~~~~~~~~~~------~v~~~~~---s~~~~~l~~~g~~dg~i~i~d~~~~~~~ 303 (402)
T 2aq5_A 239 FSR---MSERQVALWDTKHLE---EPLSLQELDTSS------GVLLPFF---DPDTNIVYLCGKGDSSIRYFEITSEAPF 303 (402)
T ss_dssp ECT---TCCEEEEEEETTBCS---SCSEEEECCCCS------SCEEEEE---ETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred ccC---CCCceEEEEcCcccc---CCceEEeccCCC------ceeEEEE---cCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence 210 235689999887522 111122222211 1333444 44566 44555433359999999887
Q ss_pred EEEe
Q 040165 332 LEEI 335 (358)
Q Consensus 332 ~~~v 335 (358)
...+
T Consensus 304 ~~~l 307 (402)
T 2aq5_A 304 LHYL 307 (402)
T ss_dssp EEEE
T ss_pred eEee
Confidence 5555
No 108
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=80.25 E-value=31 Score=30.59 Aligned_cols=57 Identities=5% Similarity=0.010 Sum_probs=39.2
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEc-CcceEEEEECCCCeEEEe
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMIN-KWREFISCNLNERTLEEI 335 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~-~~~~l~~yd~~t~~~~~v 335 (358)
=+||++|. .+...+.+|+.... ...+++ ..+|+ +++... ..+.+..+|.+|++..+.
T Consensus 298 ~~V~VID~----~t~~vv~~i~~g~~------p~~i~~---s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 298 KEVTSVTG----LVGQTSSQISLGHD------VDAISV---AQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEC----CCCEEEEEEECCCC------cCeEEE---CCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 36788876 56778888876542 345566 66777 666554 344699999999887654
No 109
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=80.24 E-value=43 Score=32.17 Aligned_cols=190 Identities=11% Similarity=0.028 Sum_probs=88.6
Q ss_pred eEEEEEeCCceEEEEcccccc-eeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEeccccc
Q 040165 105 LVCMALHGCKDFFIYNPSTRA-HKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNL 182 (358)
Q Consensus 105 ll~~~~~~~~~~~V~NP~T~~-~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~ 182 (358)
|++.. ....+.+.|...+. ...++..... ...++.+|+..+. |.+.-.....+..++..+.. +..+-.
T Consensus 11 ~~~~~--~~~~I~~i~~~~~~~~~~~~~~~~~----~~~~ld~~~~~~~--ly~sD~~~~~I~r~~~~g~~~~~~v~~-- 80 (619)
T 3s94_A 11 LLLYA--NRRDLRLVDATNGKENATIVVGGLE----DAAAVDFVFSHGL--IYWSDVSEEAIKRTEFNKTESVQNVVV-- 80 (619)
T ss_dssp CEEEE--CSSBEEEECCC---------CBCCS----CEEEEEEETTTTE--EEEEETTTTEEEEEEC-----CEEEEC--
T ss_pred eEEEe--ccccEEEEeCCCCcceEEEEEcCCC----ceEEEEEEeCCCE--EEEEECCCCeEEEEEccCCCceEEEEe--
Confidence 44443 56667777776543 2333332221 2677888887663 33222233456666655432 332211
Q ss_pred ccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEE--ECCeeEEEeec
Q 040165 183 GVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGV--VGGCLSLNVCC 256 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~--~~g~L~lv~~~ 256 (358)
... ....++.+ +|.+||..... ..|..+|+....-..+ .-.... -..|+. .+|.||...
T Consensus 81 -----~~~-~~P~GlAvD~~~~~ly~~d~~~------~~I~v~~~dG~~~~~l~~~~l~~-P~~Iavdp~~g~ly~tD-- 145 (619)
T 3s94_A 81 -----SGL-LSPDGLACDWLGEKLYWTDSET------NRIEVSNLDGSLRKVLFWQELDQ-PRAIALDPSSGFMYWTD-- 145 (619)
T ss_dssp -----SSC-SCEEEEEEETTTTEEEEEETTT------TEEEEEETTSCSCEEEECSSCSC-CCCEEEETTTTEEEEEE--
T ss_pred -----CCC-CCcCeEEEEecCCEEEEEeCCC------CEEEEEECCCCCEEEEEeCCCCC-CceEEEecCCCeEEEec--
Confidence 111 12234443 68899987653 5899999987544333 222221 223444 468888776
Q ss_pred ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 257 SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..... .||+.+-+|.. . ..+ +. ..+ ..|.++..+..++.||+.......+..+|++...-+.+
T Consensus 146 ---~g~~~--~I~r~~~dG~~-~-~~l--~~-~~~------~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 208 (619)
T 3s94_A 146 ---WGEVP--KIERAGMDGSS-R-FII--IN-SEI------YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV 208 (619)
T ss_dssp ---CSSSC--EEEEEETTSCS-C-EEE--EC-SSC------SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--
T ss_pred ---cCCCC--EEEEEECCCCc-e-EEE--Ee-CCC------CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE
Confidence 22223 44555432221 1 111 11 111 34544444455566777665544577777765544443
No 110
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=80.04 E-value=42 Score=31.97 Aligned_cols=186 Identities=12% Similarity=0.010 Sum_probs=97.9
Q ss_pred ceEEEEcccc------cceeccC-CCCCCCCCCceEEEeEeCCCCCeEEEEEEc------cceEEEEEEcC-CCceEecc
Q 040165 114 KDFFIYNPST------RAHKKLP-DPDISLGSPYLYGFGYDSSTDDYKVLAVSC------LRVLLKVFSMK-AFSWRDVH 179 (358)
Q Consensus 114 ~~~~V~NP~T------~~~~~lP-~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~------~~~~~~vyss~-t~~W~~~~ 179 (358)
.+++++|..+ ++...+. .-.. ......+.|.. ++-++.-.. ....+.+++.. ++.+....
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~ 234 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHR-----FVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR 234 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSS-----EECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCCC-----cccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence 4789999998 7776665 3211 12223445543 333322221 23578888988 57443222
Q ss_pred cccccccccccCCC-CceEE-ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCC--CC-----CceEEEEE-CC
Q 040165 180 YNLGVKLFYGTESP-PKGCL-FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEAC--HP-----RSVSLGVV-GG 248 (358)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~--~~-----~~~~l~~~-~g 248 (358)
. +....... ..... -+|.+|+.+.... ...|..+|+.++++..+ +... .. ....+... +|
T Consensus 235 ~-----l~~~~~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 235 T-----LLGGPEEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp E-----EEEETTBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred E-----eCCCCCceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 1 11110011 11222 2788887765431 24799999988887665 3221 10 01234444 78
Q ss_pred eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEE-EEeeecCCCcEEEEEcCc---ceEEE
Q 040165 249 CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTL-CTATGTDGGDEIIMINKW---REFIS 324 (358)
Q Consensus 249 ~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~~~~~---~~l~~ 324 (358)
++++.. . . ....+|.++..+ +. ...+.... .....+ .. ..+.+++..... ..++.
T Consensus 306 ~~~~~~-----~-~-~~~~l~~~d~~~--~~---~~~l~~~~-----~~~~~~~s~----~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 306 LIAVVH-----G-K-GAAVLGILDPES--GE---LVDAAGPW-----TEWAATLTV----SGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp CEEEEE-----B-S-SSCEEEEEETTT--TE---EEECCSSC-----CEEEEEEEE----ETTEEEEEEEETTEEEEEEE
T ss_pred EEEEEE-----E-c-CccEEEEEECCC--Cc---EEEecCCC-----CeEEEEEec----CCCEEEEEEcCCCCCCEEEE
Confidence 877766 3 3 678999987532 22 23333221 112333 32 334455544322 15899
Q ss_pred EECCCCeEEEe
Q 040165 325 CNLNERTLEEI 335 (358)
Q Consensus 325 yd~~t~~~~~v 335 (358)
+|+++++.+.+
T Consensus 365 ~d~~~g~~~~l 375 (662)
T 3azo_A 365 LDTVTGRARTI 375 (662)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCceEEe
Confidence 99999988877
No 111
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=79.98 E-value=29 Score=36.11 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=94.3
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-.++....+..+.+||..+++...+..... ....+.+.+. . +++.. .....+.+++..+++-...-.
T Consensus 1012 s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~--~-~l~~~-~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A 1012 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE-----TVKDFRLLQD--S-RLLSW-SFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp CSSSSCEEEECSSSBEEEEETTTTEEECCBCCSS-----CEEEEEECSS--S-EEEEE-ESSSEEEEEETTTTCCCEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCceEEEecCCC-----cEEEEEEcCC--C-cEEEE-ECCCcEEEEECCCCceeEEEc
Confidence 3444444432456778899999888775542221 1334444442 2 23333 345678899888765321110
Q ss_pred ccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEE-CCeeEEEeeccc
Q 040165 181 NLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVV-GGCLSLNVCCSN 258 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~-~g~L~lv~~~~~ 258 (358)
..... ...-...-+|.....+... ..|..+|+.+.+-.. .+..+. ....+... +|++.+.+.
T Consensus 1083 -----~~~~~-v~~~~~s~d~~~l~s~s~d------~~v~iwd~~~~~~~~-~l~~h~~~v~~~~~s~dg~~lat~~--- 1146 (1249)
T 3sfz_A 1083 -----CHQGT-VLSCAISSDATKFSSTSAD------KTAKIWSFDLLSPLH-ELKGHNGCVRCSAFSLDGILLATGD--- 1146 (1249)
T ss_dssp -----CCSSC-CCCEEECSSSSSCEEECCS------SCCCEECSSSSSCSB-CCCCCSSCEEEEEECSSSSEEEEEE---
T ss_pred -----ccCCc-EEEEEECCCCCEEEEEcCC------CcEEEEECCCcceee-eeccCCCcEEEEEECCCCCEEEEEe---
Confidence 00000 0011112244443333332 356677776654211 111111 22333333 777666552
Q ss_pred ccCCCCcEEEEEEccCCCCCceeEEEEeecC-CccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEE
Q 040165 259 CVDKTTDFELWVMKQYGVHSSWERLTKIDND-IMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 259 ~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~ 334 (358)
....+.+|.++... ..... ..+... ....+......+++ ..+|..++...+ .+..||+.+++...
T Consensus 1147 ---~dg~i~vwd~~~~~--~~~~~-~~~~~~~~~~~~~~~v~~l~f---s~dg~~l~s~~g--~v~vwd~~~g~~~~ 1212 (1249)
T 3sfz_A 1147 ---DNGEIRIWNVSDGQ--LLHSC-APISVEEGTATHGGWVTDVCF---SPDSKTLVSAGG--YLKWWNVATGDSSQ 1212 (1249)
T ss_dssp ---TTSCCCEEESSSSC--CCCCC-CCCC-------CCSCCCEEEE---CTTSSCEEEESS--SEEEBCSSSCBCCC
T ss_pred ---CCCEEEEEECCCCc--eEEEe-ccccccccccccCceEEEEEE---CCCCCEEEECCC--eEEEEECCCCceee
Confidence 34579999987522 11110 000000 01112223455666 667776665553 39999999876533
No 112
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=79.74 E-value=26 Score=29.41 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=94.4
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEec-cccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDV-HYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~-~~~~~~~~~~~~ 190 (358)
....+.++||.+++...+..+..........++.+|+..+..-| + .....+.+|+.. ++.+.. .. .....
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~--~~~~~l~~~d~~-g~~~~~~~~-----~~~~~ 114 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-A--DMRLGLLVVQTD-GTFEEIAKK-----DSEGR 114 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-E--ETTTEEEEEETT-SCEEECCSB-----CTTSC
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-E--ECCCCEEEEeCC-CCEEEEEec-----cCCCc
Confidence 45568889998888766543110000011455667766333222 2 122368888888 776654 32 11000
Q ss_pred -CCCCceEEE--CceEEEEeecCC---------CCCCCcEEEEEECCCCeeEEecCCCCCCceEEEE-----ECC-eeEE
Q 040165 191 -ESPPKGCLF--NGALHWLVSGFH---------FGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGV-----VGG-CLSL 252 (358)
Q Consensus 191 -~~~~~~v~~--~G~lywl~~~~~---------~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~-----~~g-~L~l 252 (358)
......+.+ +|.+|+...... .......|..+|+. +++..+.-.... ...++. .+| .|++
T Consensus 115 ~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-~~~i~~~~~~d~dg~~l~v 192 (314)
T 1pjx_A 115 RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF-PNGIAVRHMNDGRPYQLIV 192 (314)
T ss_dssp BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS-EEEEEEEECTTSCEEEEEE
T ss_pred cccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC-cceEEEecccCCCCCEEEE
Confidence 011223433 677776554320 00011478999987 555443111111 112222 345 4555
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccC-ceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYH-GSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
.. .....+.+|.++.. +.......+.. +.... .....+++ ..+|++++.....+.+..||+++++
T Consensus 193 ~~------~~~~~i~~~~~~~~---g~~~~~~~~~~--~~~~~~~~p~~i~~---d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 193 AE------TPTKKLWSYDIKGP---AKIENKKVWGH--IPGTHEGGADGMDF---DEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EE------TTTTEEEEEEEEET---TEEEEEEEEEE--CCCCSSCEEEEEEE---BTTCCEEEEEETTTEEEEECTTCBS
T ss_pred EE------CCCCeEEEEECCCC---CccccceEEEE--CCCCCCCCCCceEE---CCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 54 23456777776531 23332222111 00000 11233444 5578888876443359999999654
Q ss_pred E
Q 040165 332 L 332 (358)
Q Consensus 332 ~ 332 (358)
.
T Consensus 259 ~ 259 (314)
T 1pjx_A 259 P 259 (314)
T ss_dssp C
T ss_pred E
Confidence 3
No 113
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=79.72 E-value=30 Score=30.11 Aligned_cols=191 Identities=5% Similarity=-0.070 Sum_probs=90.8
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe-cc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD-VH 179 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~-~~ 179 (358)
+.+|-.++.......+.|||..+++.......+. .....+.+.+.....- +.. .....+.+++.++++-.. +.
T Consensus 136 spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~----~~V~~~~~~~~~~~~l-~s~-s~D~~v~iwd~~~~~~~~~~~ 209 (344)
T 4gqb_B 136 LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA----AQVTCVAASPHKDSVF-LSC-SEDNRILLWDTRCPKPASQIG 209 (344)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECSSCTTEE-EEE-ETTSCEEEEETTSSSCEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC----CceEEEEecCCCCCce-eee-ccccccccccccccceeeeee
Confidence 4456555553466788999998887654322211 1134455555544432 222 244678889888765322 21
Q ss_pred cccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CC-eeEEE
Q 040165 180 YNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GG-CLSLN 253 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g-~L~lv 253 (358)
. .... ....++.+ ++.+...+... ..|-.+|+.+.+-.. +.... .....+.-. +| ++.+.
T Consensus 210 ~------~~~~-~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~~~~~~~~h~-~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 210 C------SAPG-YLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTSCVLSSAVHS-QCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp ----------C-CCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--CCEEEECCS-SCEEEEEECSSSSCCEEE
T ss_pred c------ceee-ccceeeeecCCCCcceEEeccC------CcEEEEECCCCcEEEEEcCCC-CCEEEEEEccCCCeEEEE
Confidence 1 0000 01112222 23444444332 478889988764321 22111 112233333 55 34333
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCeE
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~~ 332 (358)
+ .....+.||.++. + +..+. .++.....-+++ ..+|. ++......+.+..+++.++..
T Consensus 276 g------s~D~~i~vwd~~~----~---~~~~~-----~~H~~~V~~v~~---sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 276 L------SEDCSLAVLDSSL----S---ELFRS-----QAHRDFVRDATW---SPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp E------ETTSCEEEECTTC----C---EEEEE-----CCCSSCEEEEEE---CSSSTTEEEEEETTSCEEEEECCC---
T ss_pred E------eCCCeEEEEECCC----C---cEEEE-----cCCCCCEEEEEE---eCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 3 1346799996543 1 12222 122233455555 44554 665543333599999888654
No 114
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=79.53 E-value=31 Score=30.10 Aligned_cols=193 Identities=6% Similarity=-0.051 Sum_probs=93.5
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
-+.+|-.++.......+.|||..+++....-..+. .....+.+.+..+.+-+.+ .....+.+++.++++-....
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~----~~v~~v~~s~~~~~~~~s~--~~dg~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS----SEVNCVAACPGKDTIFLSC--GEDGRILLWDTRKPKPATRI 220 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTCSSCEEEE--ETTSCEEECCTTSSSCBCBC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC----CCEEEEEEccCCCceeeee--ccCCceEEEECCCCceeeee
Confidence 34566655553467788999998887654322211 1134455556554443333 23456888887765432211
Q ss_pred cccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEe
Q 040165 180 YNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNV 254 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~ 254 (358)
. ... ....-.++.+ ++.+...+... ..|-.+|+.+.+-.. +..... ....+.-. +|.-++++
T Consensus 221 ~-----~~~-~~~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 221 D-----FCA-SDTIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLAS 287 (357)
T ss_dssp C-----CTT-CCSCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCCSS-CEEEEEECSSSSCCEEE
T ss_pred e-----ecc-ccccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEeccce-eEEEEEEcCCCCCEEEE
Confidence 1 000 0011122333 24444444332 468889988765322 222211 12233333 55433333
Q ss_pred ecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 255 CCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
+ .....+.||.++. . ..+..+. +.....-+++ .+.++.+++.....+.+..+|+.+.
T Consensus 288 g-----s~D~~i~iwd~~~----~--~~~~~~~------H~~~V~~vaf--sP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 288 I-----SEDCTVAVLDADF----S--EVFRDLS------HRDFVTGVAW--SPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp E-----ETTSCEEEECTTS----C--EEEEECC------CSSCEEEEEE--CSSSTTEEEEEETTSCEEEEECC--
T ss_pred E-----eCCCEEEEEECCC----C--cEeEECC------CCCCEEEEEE--eCCCCCEEEEEcCCCeEEEEECCCC
Confidence 2 1346799997654 2 1222221 2222444555 2346776665543335999998653
No 115
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=79.50 E-value=50 Score=32.48 Aligned_cols=197 Identities=9% Similarity=-0.050 Sum_probs=103.7
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCC-----CCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPD-----ISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~-----~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
+|-|-+. ....-+..+||.++.+......+ ..........+..|.... +.+......+..|+..++.++.
T Consensus 323 ~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~----lWigt~~~Gl~~~~~~~~~~~~ 397 (781)
T 3v9f_A 323 FNNIWIG-TWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK----LWIGTDGGGINVFENGKRVAIY 397 (781)
T ss_dssp SCCEEEE-EBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC----EEEEEBSSCEEEEETTEEEEEC
T ss_pred CCCEEEE-ecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC----EEEEeCCCcEEEEECCCCeEEE
Confidence 4444443 23445677788877766654321 111111244455555432 2222223457778887776665
Q ss_pred cccccccccccccCC-CCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC-C-CCCceEEEEE-CCeeE
Q 040165 178 VHYNLGVKLFYGTES-PPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA-C-HPRSVSLGVV-GGCLS 251 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P-~-~~~~~~l~~~-~g~L~ 251 (358)
... +..... .-.+++. +|.| |++... ..+..||..++++..+..+ . ......+.+. +|.|.
T Consensus 398 ~~~------~~~~~~~~v~~i~~d~~g~l-Wigt~~------~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw 464 (781)
T 3v9f_A 398 NKE------NRELLSNSVLCSLKDSEGNL-WFGTYL------GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW 464 (781)
T ss_dssp C-----------CCCSBEEEEEECTTSCE-EEEETT------EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE
T ss_pred ccC------CCCCCCcceEEEEECCCCCE-EEEecc------CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE
Confidence 421 111100 1122333 4554 556542 4899999999999887653 2 1223345554 78888
Q ss_pred EEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 252 LNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 252 lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
+.+ . ..+ +.++.. ...|..........+. ......+.. ..+|.|++...+.+ ++.||+++++
T Consensus 465 igt-----~---~Gl--~~~~~~--~~~~~~~~~~~~~~~~--~~~i~~i~~---d~~g~lWigt~~~G-l~~~~~~~~~ 526 (781)
T 3v9f_A 465 IGT-----H---AGV--FVIDLA--SKKVIHHYDTSNSQLL--ENFVRSIAQ---DSEGRFWIGTFGGG-VGIYTPDMQL 526 (781)
T ss_dssp EEE-----T---TEE--EEEESS--SSSCCEEECTTTSSCS--CSCEEEEEE---CTTCCEEEEESSSC-EEEECTTCCE
T ss_pred EEE-----C---Cce--EEEeCC--CCeEEecccCcccccc--cceeEEEEE---cCCCCEEEEEcCCC-EEEEeCCCCe
Confidence 877 2 234 444431 1456554432211111 122334444 55777988887554 9999999999
Q ss_pred EEEe
Q 040165 332 LEEI 335 (358)
Q Consensus 332 ~~~v 335 (358)
++.+
T Consensus 527 ~~~~ 530 (781)
T 3v9f_A 527 VRKF 530 (781)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9887
No 116
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=79.20 E-value=35 Score=30.57 Aligned_cols=114 Identities=7% Similarity=0.056 Sum_probs=60.3
Q ss_pred eEEECceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCC-CCCceEEEEECCeeEEEeecccccCCCCcEEEEEEcc
Q 040165 196 GCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEAC-HPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 196 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~-~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
++..+|.....+... ..|..+|+.+.+- ..+..+. +...+.-...++.+.+.++ ....+.+|.++.
T Consensus 324 ~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~------~dg~v~iwd~~~ 391 (445)
T 2ovr_B 324 GMELKDNILVSGNAD------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS------DDGTVKLWDLKT 391 (445)
T ss_dssp EEEEETTEEEEEETT------SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEE------TTSEEEEEETTT
T ss_pred EEEEeCCEEEEEeCC------CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEe------CCCeEEEEECCC
Confidence 345566655544443 4799999987654 3345442 2223333344666655552 346899998875
Q ss_pred CCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcc----eEEEEECCCC
Q 040165 274 YGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWR----EFISCNLNER 330 (358)
Q Consensus 274 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~----~l~~yd~~t~ 330 (358)
++ .+..+..............+++ ..+|.++......+ .+..+|.+.+
T Consensus 392 ----~~--~~~~~~~~~~~~~~~~v~~~~~---s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 392 ----GE--FIRNLVTLESGGSGGVVWRIRA---SNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ----CC--EEEEEEECTTGGGTCEEEEEEE---CSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ----Cc--eeeeeeccccCCCCceEEEEEe---cCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 22 3333321111122223455555 55666555544333 3888887754
No 117
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=79.06 E-value=32 Score=30.07 Aligned_cols=143 Identities=6% Similarity=-0.033 Sum_probs=71.2
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|.++.. .....+.++|..+++....-... ......+.+.+..+ +-+++ .....+.+|+..++.-...-.
T Consensus 215 ~~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~-~l~~~--~~d~~i~i~d~~~~~~~~~~~ 286 (425)
T 1r5m_A 215 VDDDKFVIP-GPKGAIFVYQITEKTPTGKLIGH----HGPISVLEFNDTNK-LLLSA--SDDGTLRIWHGGNGNSQNCFY 286 (425)
T ss_dssp EETTEEEEE-CGGGCEEEEETTCSSCSEEECCC----SSCEEEEEEETTTT-EEEEE--ETTSCEEEECSSSBSCSEEEC
T ss_pred cCCCEEEEE-cCCCeEEEEEcCCCceeeeeccC----CCceEEEEECCCCC-EEEEE--cCCCEEEEEECCCCccceEec
Confidence 345665544 46678889998876543322111 11144566666543 33332 345678888877653211110
Q ss_pred ccccccccccCCCCceE-E-ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEEEeec
Q 040165 181 NLGVKLFYGTESPPKGC-L-FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSLNVCC 256 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v-~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~lv~~~ 256 (358)
. ....-.++ . -+| ....+... ..|..||+.+.+.... ..... ....+... +|++.+++.
T Consensus 287 -------~-~~~~i~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~- 349 (425)
T 1r5m_A 287 -------G-HSQSIVSASWVGDD-KVISCSMD------GSVRLWSLKQNTLLALSIVDGV-PIFAGRISQDGQKYAVAF- 349 (425)
T ss_dssp -------C-CSSCEEEEEEETTT-EEEEEETT------SEEEEEETTTTEEEEEEECTTC-CEEEEEECTTSSEEEEEE-
T ss_pred -------C-CCccEEEEEECCCC-EEEEEeCC------CcEEEEECCCCcEeEecccCCc-cEEEEEEcCCCCEEEEEE-
Confidence 0 00111122 2 255 33333332 4899999987764332 22211 12233333 566655552
Q ss_pred ccccCCCCcEEEEEEcc
Q 040165 257 SNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~ 273 (358)
....+.+|.++.
T Consensus 350 -----~dg~i~i~~~~~ 361 (425)
T 1r5m_A 350 -----MDGQVNVYDLKK 361 (425)
T ss_dssp -----TTSCEEEEECHH
T ss_pred -----CCCeEEEEECCC
Confidence 346799999865
No 118
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=79.03 E-value=32 Score=29.96 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=37.2
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS 174 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~ 174 (358)
+|-+++.......+.+||..+++....-..+.. ...+.+.+...+-+.++.......+.+|+..++.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET-----VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEECSSC-----EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceeccCCCc-----eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 443333324677899999988776554332211 3344555544332222222355678899987763
No 119
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=78.21 E-value=33 Score=29.68 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=78.8
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce-EecccccccccccccCCCCceEE---ECceEEEEeecCCCCCCC
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW-RDVHYNLGVKLFYGTESPPKGCL---FNGALHWLVSGFHFGSQD 216 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W-~~~~~~~~~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~ 216 (358)
..++.+|+..+.. .+.-.....+..++..++.- +.+ ..... ....++. .+|.|||.....
T Consensus 37 ~~~ld~d~~~~~l--yw~D~~~~~I~r~~~~g~~~~~~~-------~~~~l-~~p~glavd~~~g~ly~~d~~~------ 100 (318)
T 3sov_A 37 AAAVDFVFSHGLI--YWSDVSEEAIKRTEFNKTESVQNV-------VVSGL-LSPDGLACDWLGEKLYWTDSET------ 100 (318)
T ss_dssp EEEEEEEGGGTEE--EEEETTTTEEEEEETTSSSCCCEE-------EEECC-SCCCEEEEETTTTEEEEEETTT------
T ss_pred cEEEEEEeCCCEE--EEEECCCCcEEEEEccCCCceEEE-------EcCCC-CCccEEEEEcCCCeEEEEECCC------
Confidence 5667777765533 22222345667777665421 001 11111 1223333 378999987654
Q ss_pred cEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccc
Q 040165 217 PVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVR 293 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~ 293 (358)
..|..+|+....-..+ .-... .-..++.. +|.|+... ..... .|++++..+. -.++. +. ..+
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~-~P~giavdp~~g~ly~td-----~~~~~--~I~r~~~dG~---~~~~~-~~-~~l-- 165 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELD-QPRAIALDPSSGFMYWTD-----WGEVP--KIERAGMDGS---SRFII-IN-SEI-- 165 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCS-SEEEEEEEGGGTEEEEEE-----CSSSC--EEEEEETTSC---SCEEE-EC-SSC--
T ss_pred CEEEEEECCCCcEEEEEeCCCC-CccEEEEeCCCCEEEEEe-----cCCCC--EEEEEEcCCC---CeEEE-EE-CCC--
Confidence 5899999886543333 11111 12344443 67777765 21223 3455543222 11111 11 111
Q ss_pred cCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 294 YHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..|.++..+..++.||+.....+.+..+|++....+.+
T Consensus 166 ----~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 203 (318)
T 3sov_A 166 ----YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV 203 (318)
T ss_dssp ----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ----CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE
Confidence 34444433445666777766555677787775544444
No 120
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=77.85 E-value=31 Score=32.77 Aligned_cols=118 Identities=8% Similarity=-0.004 Sum_probs=65.2
Q ss_pred CceEEECceEEEEee-cCCCCCCCcEEEEEEC-CC--CeeEEe-cCCC--------CCCceEEEEECCeeEEEeeccccc
Q 040165 194 PKGCLFNGALHWLVS-GFHFGSQDPVIIAFDL-AE--EKFCRV-GEAC--------HPRSVSLGVVGGCLSLNVCCSNCV 260 (358)
Q Consensus 194 ~~~v~~~G~lywl~~-~~~~~~~~~~i~~fD~-~~--~~~~~i-~~P~--------~~~~~~l~~~~g~L~lv~~~~~~~ 260 (358)
..++..+|.+|.... . ..+.++|. .+ +.|+.- ..+. +.....++..+|+|++.. .
T Consensus 56 ~~P~v~~g~vyv~~~~~-------~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-----~ 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAFP-------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-----A 123 (571)
T ss_dssp SCCEEETTEEEEECSTT-------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-----T
T ss_pred cccEEECCEEEEEeCCC-------CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEe-----C
Confidence 556789999999876 4 37999998 65 466653 2211 111223456788887776 2
Q ss_pred CCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEe
Q 040165 261 DKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEI 335 (358)
Q Consensus 261 ~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v 335 (358)
... +..++....+..|.... .... ........|+.. +|.|++.... ...++.||.+|++..+-
T Consensus 124 --dg~--l~alD~~tG~~~W~~~~--~~~~-~~~~~~~~P~v~-----~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 124 --NGH--LLALDAKTGKINWEVEV--CDPK-VGSTLTQAPFVA-----KDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp --TSE--EEEEETTTCCEEEEEEC--CCGG-GTCBCCSCCEEE-----TTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred --CCE--EEEEECCCCCEEEEecC--CCCC-ccceeccCCEEE-----CCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 223 44555322335776532 1100 001111344443 4556665432 22599999999876654
No 121
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=77.73 E-value=18 Score=35.20 Aligned_cols=119 Identities=9% Similarity=-0.064 Sum_probs=65.0
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEe-cCCC--------CCCceEEEEECCeeEEEeecccccCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRV-GEAC--------HPRSVSLGVVGGCLSLNVCCSNCVDK 262 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i-~~P~--------~~~~~~l~~~~g~L~lv~~~~~~~~~ 262 (358)
..++..+|.+|..+..+ .|.++|..++ .|+.- ..+. +.....++..+|+|++.+ .
T Consensus 71 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~-----~-- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASWS-------VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-----W-- 136 (677)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-----T--
T ss_pred eCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEc-----C--
Confidence 55678999999987653 7999998765 56553 2211 111234556788887775 2
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEe
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEI 335 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v 335 (358)
...+..+..++ .+..|......+... .......|+.. ++.|++.... ...++.||.+|++..+-
T Consensus 137 dg~l~alD~~t--G~~~W~~~~~~~~~~--~~~~~~~p~v~-----~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 137 DGRLIALDAAT--GKEVWHQNTFEGQKG--SLTITGAPRVF-----KGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TSEEEEEETTT--CCEEEEEETTTTCCS--SCBCCSCCEEE-----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCC--CCEEeeecCCcCcCc--CcccccCcEEE-----CCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 23444333332 335676532101000 01111234433 4556654431 23599999999986654
No 122
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=77.56 E-value=34 Score=29.42 Aligned_cols=196 Identities=7% Similarity=-0.081 Sum_probs=95.3
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEecccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYN 181 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~ 181 (358)
+|-.++.......+.+||..+++.......... ......+.+.+.. .+-+++ .....+.+|+..++. |.....
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~--~~d~~v~i~d~~~~~~~~~~~~- 136 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI--NRAARCVRWAPNE-KKFAVG--SGSRVISICYFEQENDWWVCKH- 136 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECCCC--SSCEEEEEECTTS-SEEEEE--ETTSSEEEEEEETTTTEEEEEE-
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC--CCceeEEEECCCC-CEEEEE--eCCCEEEEEEecCCCcceeeee-
Confidence 454444334667788999888775433221111 1114456666653 333333 244567777776543 433222
Q ss_pred cccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCe----------------eEEe-cCCCCC-Cce
Q 040165 182 LGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEK----------------FCRV-GEACHP-RSV 241 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~----------------~~~i-~~P~~~-~~~ 241 (358)
........-.++.+ +|.....+... ..|..||+.... -..+ .+..+. ...
T Consensus 137 ----~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (372)
T 1k8k_C 137 ----IKKPIRSTVLSLDWHPNSVLLAAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 206 (372)
T ss_dssp ----ECTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred ----eecccCCCeeEEEEcCCCCEEEEEcCC------CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEE
Confidence 11110011112222 45544444432 367888864211 0111 111111 122
Q ss_pred EEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcc
Q 040165 242 SLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWR 320 (358)
Q Consensus 242 ~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ 320 (358)
.+.-. +|.+.+.+. ....+.+|.++. .+ .+..+.... .....+++ ..+|.++....+.
T Consensus 207 ~~~~~~~~~~l~~~~------~d~~i~i~d~~~----~~--~~~~~~~~~-----~~v~~~~~---~~~~~~l~~~~d~- 265 (372)
T 1k8k_C 207 GVCFSANGSRVAWVS------HDSTVCLADADK----KM--AVATLASET-----LPLLAVTF---ITESSLVAAGHDC- 265 (372)
T ss_dssp EEEECSSSSEEEEEE------TTTEEEEEEGGG----TT--EEEEEECSS-----CCEEEEEE---EETTEEEEEETTS-
T ss_pred EEEECCCCCEEEEEe------CCCEEEEEECCC----Cc--eeEEEccCC-----CCeEEEEE---ecCCCEEEEEeCC-
Confidence 33332 665555552 346899999875 22 333443221 11344555 4567766666554
Q ss_pred eEEEEECCC--CeEEEe
Q 040165 321 EFISCNLNE--RTLEEI 335 (358)
Q Consensus 321 ~l~~yd~~t--~~~~~v 335 (358)
.+..||+++ ++|+.+
T Consensus 266 ~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp SCEEEEEETTTTEEEEC
T ss_pred eEEEEEccCcCceEEEe
Confidence 499999998 888665
No 123
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=77.19 E-value=25 Score=34.31 Aligned_cols=119 Identities=13% Similarity=0.043 Sum_probs=65.8
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCC--CeeEEe-cCCC--------CCCceEEEEECCeeEEEeecccccCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE--EKFCRV-GEAC--------HPRSVSLGVVGGCLSLNVCCSNCVDK 262 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~i-~~P~--------~~~~~~l~~~~g~L~lv~~~~~~~~~ 262 (358)
..++..+|.+|..+..+ .+.++|..+ +.|+.- ..+. +.....++..+|+|++.+ .
T Consensus 64 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-----~-- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPFS-------VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV-----L-- 129 (689)
T ss_dssp CCCEEETTEEEEECGGG-------CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-----T--
T ss_pred ecCEEECCEEEEEcCCC-------eEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc-----c--
Confidence 45678999999987653 799999875 467653 2221 111233456788887766 2
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEe
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEI 335 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v 335 (358)
...+..+..++ .+..|......+... .......|+.. +|.|++.... ...++.||.+|++..+-
T Consensus 130 dg~l~AlDa~T--G~~~W~~~~~~~~~~--~~~~~~sP~v~-----~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 130 DGRLEAIDAKT--GQRAWSVDTRADHKR--SYTITGAPRVV-----NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TSEEEEEETTT--CCEEEEEECCSCTTS--CCBCCSCCEEE-----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCC--CCEeeeecCcCCCCC--CccccCCcEEE-----CCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 23444443333 335786543212111 01111344444 4556554321 22599999999986554
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=77.11 E-value=41 Score=30.14 Aligned_cols=183 Identities=10% Similarity=0.023 Sum_probs=96.6
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-ccceEEEEEEcCCCceEecccccccccccccCC
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTES 192 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~ 192 (358)
..++++|..|++...+...+. ....+.+.|..+ +-++... .....+.+++..++..+.+... . .
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~-----~~~~~~~spdg~-~la~~~~~~g~~~i~~~d~~~~~~~~l~~~-----~----~ 267 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR-----HNGAPAFSPDGS-KLAFALSKTGSLNLYVMDLASGQIRQVTDG-----R----S 267 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS-----CEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEEECCCC-----S----S
T ss_pred cEEEEEECCCCcEEEeecCCC-----cccCEEEcCCCC-EEEEEEecCCCceEEEEECCCCCEEeCcCC-----C----C
Confidence 589999999998876644322 144566666543 3222222 3356788889988876655431 1 0
Q ss_pred CCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEE
Q 040165 193 PPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 193 ~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~v 268 (358)
....+.+ +|. |++...... ...|..+|+.+++...+..... ....+.-. +|+..++.... .....+.+
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g----~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~spdG~~l~~~~~~---~g~~~i~~ 339 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAG----RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSN---GGQQHIAK 339 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCCEECCCSSS-EEEEEEECTTSSEEEEEEEC---SSCEEEEE
T ss_pred cccceEECCCCCEEEEEECCCC----CcEEEEEECCCCCEEEEecCCC-cccCeEECCCCCEEEEEECc---CCceEEEE
Confidence 1112222 565 444443221 2478889998877554432211 11223332 67655554211 11235555
Q ss_pred EEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcc--eEEEEECCCCeEEEe
Q 040165 269 WVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWR--EFISCNLNERTLEEI 335 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~--~l~~yd~~t~~~~~v 335 (358)
|.++. +... .+.... .....++ ..+|+ |++...+.. .++.+|++++..+.+
T Consensus 340 ~d~~~----~~~~---~l~~~~------~~~~~~~---spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 340 QDLAT----GGVQ---VLSSTF------LDETPSL---APNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EETTT----CCEE---ECCCSS------SCEEEEE---CTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred EECCC----CCEE---EecCCC------CcCCeEE---cCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 55543 2332 222111 1344555 66777 555443331 599999999988887
No 125
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=76.22 E-value=35 Score=28.97 Aligned_cols=195 Identities=9% Similarity=-0.031 Sum_probs=96.5
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccc
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYN 181 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~ 181 (358)
.+|-|.+......+++.+||.++....++... ...++.+++..+ ..|.-.......+..|+..+++.+.+..
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~------~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~- 112 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDGNQQIHATVEG------KVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLT- 112 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEEEEECSS------EEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEE-
T ss_pred CCCCEEEEeCCCCeEEEECCCCceEEEEeCCC------CceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEe-
Confidence 36766665235678889999876443332221 245667776643 3222211112346667777887765543
Q ss_pred cccccccccCCCCceE-EECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe---c-----CCCCC--CceEEEEECCee
Q 040165 182 LGVKLFYGTESPPKGC-LFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV---G-----EACHP--RSVSLGVVGGCL 250 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i---~-----~P~~~--~~~~l~~~~g~L 250 (358)
.+... .....+ ..+|.+|...... ..|..+|..+.+.+.. . .+... .--.+...++.|
T Consensus 113 ----~~~~~-~~~g~~~~~~~~~~v~d~~~------g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~l 181 (306)
T 2p4o_A 113 ----LPDAI-FLNGITPLSDTQYLTADSYR------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 181 (306)
T ss_dssp ----CTTCS-CEEEEEESSSSEEEEEETTT------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred ----CCCcc-ccCcccccCCCcEEEEECCC------CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEE
Confidence 22111 111111 2244556543222 4899999886533221 1 11111 122343335567
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
++.. . ....+.++.++..+.-......... ....-+++ ..+|+|++.....+.+..||++ +
T Consensus 182 yv~d-----~-~~~~I~~~~~~~~g~~~~~~~~~~~---------~~P~gi~v---d~dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 182 YVSN-----T-EKMLLLRIPVDSTDKPGEPEIFVEQ---------TNIDDFAF---DVEGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp EEEE-----T-TTTEEEEEEBCTTSCBCCCEEEEES---------CCCSSEEE---BTTCCEEEECBTTCCEEEECTT-C
T ss_pred EEEe-----C-CCCEEEEEEeCCCCCCCccEEEecc---------CCCCCeEE---CCCCCEEEEeCCCCeEEEECCC-C
Confidence 7776 2 3456666655531111111111111 01234566 5678888877655569999997 4
Q ss_pred eEEE
Q 040165 331 TLEE 334 (358)
Q Consensus 331 ~~~~ 334 (358)
+...
T Consensus 243 ~~~~ 246 (306)
T 2p4o_A 243 STTI 246 (306)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 4443
No 126
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=76.14 E-value=24 Score=34.26 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=65.8
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCC--CeeEEe-cCCC--------CCCceEEEEECCeeEEEeecccccCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE--EKFCRV-GEAC--------HPRSVSLGVVGGCLSLNVCCSNCVDK 262 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~i-~~P~--------~~~~~~l~~~~g~L~lv~~~~~~~~~ 262 (358)
..++..+|.+|.....+ .+.++|..+ +.|+.- ..+. +.....++..+|+|++.+ .
T Consensus 60 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-----~-- 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSWS-------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-----L-- 125 (668)
T ss_dssp CCCEEETTEEEEEEGGG-------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-----T--
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc-----C--
Confidence 55678999999987664 899999875 467653 2221 111233455688887765 2
Q ss_pred CCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-----cceEEEEECCCCeEEEeec
Q 040165 263 TTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-----WREFISCNLNERTLEEIYR 337 (358)
Q Consensus 263 ~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~l~~yd~~t~~~~~v~~ 337 (358)
...+ ..++....+..|..... +... .......|+.. +|.|++.... ...++.||.+|++..+-+.
T Consensus 126 dg~l--~alD~~tG~~~W~~~~~-~~~~--~~~~~~~P~v~-----~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 DGRL--IALDAKTGKAIWSQQTT-DPAK--PYSITGAPRVV-----KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TSEE--EEEETTTCCEEEEEECS-CTTS--SCBCCSCCEEE-----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEE--EEEECCCCCEeeeeccC-CCCC--cceecCCCEEE-----CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 2334 44443223367865321 1100 01111234433 4556554322 1359999999998665433
No 127
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=75.89 E-value=30 Score=31.54 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=61.2
Q ss_pred CceEEEC-----ceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEE-ECCeeEEEeecccccCCCCcEE
Q 040165 194 PKGCLFN-----GALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGV-VGGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 194 ~~~v~~~-----G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~-~~g~L~lv~~~~~~~~~~~~~~ 267 (358)
..++.++ |.|||.... ..|..+|+.+++...+..+... -..++. .+|+|++..... ....-.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-------~~I~~id~~~g~v~~~~~~~~~-P~giavd~dG~lyVad~~~----~~~~~g 208 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-------DAFRHVDFVNQYVDIKTTNIGQ-CADVNFTLNGDMVVVDDQS----SDTNTG 208 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-------SCEEEEETTTTEEEEECCCCSC-EEEEEECTTCCEEEEECCS----CTTSEE
T ss_pred CceEEEccccCCCEEEEEeCC-------CCEEEEECCCCEEEEeecCCCC-ccEEEECCCCCEEEEcCCC----Ccccce
Confidence 4566666 899998765 3799999988888776333221 223444 377777666211 111222
Q ss_pred EEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
+..+... ..|.....+.. + ..|.++.++..+|.||+.......++.||+++++.
T Consensus 209 v~~~~~~---~~~~~~~~~~~--~------~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 209 IYLFTRA---SGFTERLSLCN--A------RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp EEEECGG---GTTCCEEEEEE--C------SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred EEEEECC---CCeeccccccc--c------CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 3333321 22322122221 1 12222222344677777665544588888877666
No 128
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=75.84 E-value=59 Score=31.40 Aligned_cols=189 Identities=13% Similarity=0.065 Sum_probs=95.6
Q ss_pred eEEEEccccccee--ccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEc--cceEEEEEEcCCCceEeccccccccccccc
Q 040165 115 DFFIYNPSTRAHK--KLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSC--LRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 115 ~~~V~NP~T~~~~--~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~--~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
.+++++.-|++.. .+-..+.. ........+++.. ++-++.... ....+.+.+..++.|+.+.. +..
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~--~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~------~~~- 272 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGD--PTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDFRLLVK------GVG- 272 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCC--TTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSCEEEEE------CSS-
T ss_pred EEEEEECCCCchhceEEEecCCC--CEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCceEEeec------CCC-
Confidence 4888888877632 22111111 0123445566654 555554432 23455555555667877654 111
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCe---eEEecCCC-CCCceEEEEECCeeEEEeecccccCCCCcE
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEK---FCRVGEAC-HPRSVSLGVVGGCLSLNVCCSNCVDKTTDF 266 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~---~~~i~~P~-~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~ 266 (358)
.....+..+|.+|+.+.... ....|..+|+.+.. |+.+-.+. +.....+...+++|++... .....
T Consensus 273 -~~~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~------~dg~~ 342 (695)
T 2bkl_A 273 -AKYEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYL------KDATS 342 (695)
T ss_dssp -CCEEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEE------ETTEE
T ss_pred -ceEEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEE------ECCEE
Confidence 11233445777666554221 13589999997654 66653332 2111223445888877762 34567
Q ss_pred EEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc---ceEEEEECCCCeEEEe
Q 040165 267 ELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW---REFISCNLNERTLEEI 335 (358)
Q Consensus 267 ~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~---~~l~~yd~~t~~~~~v 335 (358)
++|.++-.+ + ....+..... .....+++ ..+++ +++..... ..++.||+++++.+.+
T Consensus 343 ~l~~~~~~g--~---~~~~l~~~~~----~~v~~~~~---s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 343 EVRVATLKG--K---PVRTVQLPGV----GAASNLMG---LEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp EEEEEETTC--C---EEEECCCSSS----SEECCCBS---CTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEEEeCCC--C---eeEEecCCCC----eEEEEeec---CCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 888887422 1 2333432210 01122222 33455 55443221 2599999999887666
No 129
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=75.47 E-value=68 Score=31.89 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=83.1
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCc
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDP 217 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~ 217 (358)
..++.+|...+. |.+.-.....++++++....-+.+.. ... ....++.+ +|.|||..... ..
T Consensus 473 P~GLAvD~~~~~--LY~tD~~~~~I~v~~ldG~~~~~l~~-------~~l-~~P~gIaVDp~~g~LYwtD~g~-----~~ 537 (791)
T 3m0c_C 473 PDGLAVDWIHSN--IYWTDSVLGTVSVADTKGVKRKTLFR-------ENG-SKPRAIVVDPVHGFMYWTDWGT-----PA 537 (791)
T ss_dssp CCEEEEETTTTE--EEEEETTTTEEEEEETTSSSEEEEEE-------CTT-CCEEEEEEETTTTEEEEEECSS-----SC
T ss_pred cceeeeeecCCc--EEEEecCCCeEEEEeCCCCeEEEEEe-------CCC-CCcceEEEecCCCCEEEecCCC-----CC
Confidence 346777776653 22222345678888887655444321 011 11234444 58999987543 14
Q ss_pred EEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 218 VIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 218 ~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
.|..+++....-..+ .--.. .-..|+.. +|+||++. . .... |+..+-.+. ...+.+ ....
T Consensus 538 ~I~~~~~dG~~~~~lv~~~l~-~P~GLavD~~~~~LYwaD-----~-~~~~--I~~~d~dG~-~~~~v~---~~~~---- 600 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRLYWVD-----S-KLHS--ISSIDVNGG-NRKTIL---EDEK---- 600 (791)
T ss_dssp EEEEEETTSCCEEEEECSSCS-CEEEEEEETTTTEEEEEE-----T-TTTE--EEEEETTSC-SCEEEE---ECTT----
T ss_pred eEEEEecCCCceEEEEeCCCC-CceEEEEecCCCeEEEEe-----C-CCCc--EEEEecCCC-ceEEEe---cCCC----
Confidence 899999986544333 21111 12244544 88999886 2 2334 455543332 222222 1111
Q ss_pred CceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 295 HGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
....|+++. ..++.||+.....+.|..+|..+++-
T Consensus 601 -~l~~P~gla--v~~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 601 -RLAHPFSLA--VFEDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp -TTSSEEEEE--EETTEEEEEETTTTEEEEEETTTCCC
T ss_pred -ccCCCCEEE--EeCCEEEEEECCCCEEEEEeCCCCcc
Confidence 113455541 22455888876666799999877743
No 130
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=74.96 E-value=43 Score=29.36 Aligned_cols=152 Identities=7% Similarity=-0.092 Sum_probs=73.9
Q ss_pred ccceEEEEEEcCCCceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCC--eeEEecC
Q 040165 160 CLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRVGE 234 (358)
Q Consensus 160 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~ 234 (358)
.....+.+++..++.-...-.. ..+......-.++.+ +|.+...+... ..|-.+|+... ....+..
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~sgs~D------~~v~~wd~~~~~~~~~~~~~ 247 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGS---EFPSGHTADVLSLSINSLNANMFISGSCD------TTVRLWDLRITSRAVRTYHG 247 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECC---CSSSSCCSCEEEEEECSSSCCEEEEEETT------SCEEEEETTTTCCCCEEECC
T ss_pred CCCCcEEEEEcCCCcEEEEeec---ccCCCCccCeEEEEeecCCCCEEEEEECC------CeEEEEECCCCCcceEEECC
Confidence 3556788888887754322110 011111011112222 45555444443 47888998632 2222222
Q ss_pred CCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEE
Q 040165 235 ACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEI 313 (358)
Q Consensus 235 P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~ 313 (358)
... ....+.-. +|...+.+ .....+.+|.+.. +.-....................+++ ..+|+++
T Consensus 248 h~~-~v~~v~~~p~~~~l~s~------s~D~~i~lwd~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~g~~l 313 (380)
T 3iz6_a 248 HEG-DINSVKFFPDGQRFGTG------SDDGTCRLFDMRT----GHQLQVYNREPDRNDNELPIVTSVAF---SISGRLL 313 (380)
T ss_dssp CSS-CCCEEEECTTSSEEEEE------CSSSCEEEEETTT----TEEEEEECCCCSSSCCSSCSCSEEEE---CSSSSEE
T ss_pred cCC-CeEEEEEecCCCeEEEE------cCCCeEEEEECCC----CcEEEEecccccccccccCceEEEEE---CCCCCEE
Confidence 111 12233333 66665555 2346899999875 11111111111111111122455666 6678877
Q ss_pred EEEcCcceEEEEECCCCeEEE
Q 040165 314 IMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 314 ~~~~~~~~l~~yd~~t~~~~~ 334 (358)
+.....+.+..||..+++...
T Consensus 314 ~~g~~dg~i~vwd~~~~~~~~ 334 (380)
T 3iz6_a 314 FAGYSNGDCYVWDTLLAEMVL 334 (380)
T ss_dssp EEECTTSCEEEEETTTCCEEE
T ss_pred EEEECCCCEEEEECCCCceEE
Confidence 766555569999998876543
No 131
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=74.72 E-value=39 Score=28.79 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=40.1
Q ss_pred ceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce
Q 040165 104 GLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW 175 (358)
Q Consensus 104 Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W 175 (358)
|-+++.......+.|+|..+++....-... ......+.+.+..+.+-+.+ .....+.+|+..+++-
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGH----GNAINELKFHPRDPNLLLSV--SKDHALRLWNIQTDTL 150 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESC----CSCEEEEEECSSCTTEEEEE--ETTSCEEEEETTTTEE
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCC----CCcEEEEEECCCCCCEEEEE--eCCCeEEEEEeecCeE
Confidence 444444356778999999887764432211 11245567777555554444 3456799999988754
No 132
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=74.38 E-value=38 Score=28.52 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=31.3
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEe
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNV 254 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~ 254 (358)
+|.+||..... ..|..||+.+++...+..|.. ...++.. +|+|++..
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~dG~l~v~~ 71 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVTMDAP--VSSVALRQSGGYVATI 71 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEEEECSSC--EEEEEEBTTSSEEEEE
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEeCCCc--eEEEEECCCCCEEEEE
Confidence 47899988764 589999999887766655521 2233433 77755543
No 133
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=74.16 E-value=40 Score=28.62 Aligned_cols=107 Identities=8% Similarity=0.049 Sum_probs=60.0
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCC
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHS 278 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~ 278 (358)
+|.+||..... ..|..+|+.++.-..+..+. .-..++.. +|+|++... ......|+.++... +
T Consensus 42 ~g~lyv~d~~~------~~I~~~d~~g~~~~~~~~~~--~p~gia~~~dG~l~vad~------~~~~~~v~~~d~~~--g 105 (306)
T 2p4o_A 42 DGTIFVTNHEV------GEIVSITPDGNQQIHATVEG--KVSGLAFTSNGDLVATGW------NADSIPVVSLVKSD--G 105 (306)
T ss_dssp TSCEEEEETTT------TEEEEECTTCCEEEEEECSS--EEEEEEECTTSCEEEEEE------CTTSCEEEEEECTT--S
T ss_pred CCCEEEEeCCC------CeEEEECCCCceEEEEeCCC--CceeEEEcCCCcEEEEec------cCCcceEEEEcCCC--C
Confidence 68899987553 48999999876444444442 12234443 788877652 12234566665321 4
Q ss_pred ceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 279 SWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 279 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
+...+..++... .....+. ..++.+++.......++.+|+.+++
T Consensus 106 ~~~~~~~~~~~~------~~~g~~~---~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 106 TVETLLTLPDAI------FLNGITP---LSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp CEEEEEECTTCS------CEEEEEE---SSSSEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEEeCCCcc------ccCcccc---cCCCcEEEEECCCCeEEEEeCCCCc
Confidence 455444442111 1233344 4455577766433459999998763
No 134
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=73.09 E-value=54 Score=29.69 Aligned_cols=113 Identities=8% Similarity=0.025 Sum_probs=62.7
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCe-eEEEeecccccCCCCcEEEEEEccCCCC
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGC-LSLNVCCSNCVDKTTDFELWVMKQYGVH 277 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~~ 277 (358)
+|.||+.... ..|..||+.+++...+..+.. .-..++.. +|+ |++.....+ ......+|...+
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~~~~-~P~~ia~d~~G~~lyvad~~~~---~~~~~v~~~~~~---- 213 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYSGLS-KVRTICWTHEADSMIITNDQNN---NDRPNNYILTRE---- 213 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEECCCS-CEEEEEECTTSSEEEEEECCSC---TTSEEEEEEEGG----
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEecCCC-CcceEEEeCCCCEEEEEeCCCC---cccceEEEEeCC----
Confidence 4889988764 389999999988766532221 12334443 666 666662110 122233444433
Q ss_pred CceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 278 SSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 278 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
+.|.....+.... ....+++ +..+|.||+.....+.++.||++++....+
T Consensus 214 g~~~~~~~l~~~~------~p~giav--dp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 214 SGFKVITELTKGQ------NCNGAET--HPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp GTSCSEEEEEECS------SCCCEEE--CTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CceeeeeeeccCC------CceEEEE--eCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 3344222232111 1223334 344777888876655699999998876443
No 135
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=72.96 E-value=75 Score=31.26 Aligned_cols=205 Identities=13% Similarity=0.134 Sum_probs=106.6
Q ss_pred EEeecceEEEEEeCCceEEEEcccccceeccCCCC---CCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce
Q 040165 99 IGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPD---ISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW 175 (358)
Q Consensus 99 ~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~---~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W 175 (358)
....+|-+.+. ....-++.+||.++++......+ ..........+..|+... +++.... .+.+|+..++.+
T Consensus 221 ~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~----lWigt~~-Gl~~~~~~~~~~ 294 (795)
T 4a2l_A 221 LQQSPTRIWVA-TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR----LWIGTFN-DLNIYHEGTDSF 294 (795)
T ss_dssp EEEETTEEEEE-EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC----EEEEESS-CEEEEETTTTEE
T ss_pred EEcCCCCEEEE-ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC----EEEEeCC-hhheEcCCCCeE
Confidence 33345666554 23445888999988877664332 111112234445554322 2222223 788899999988
Q ss_pred EecccccccccccccCCC-CceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecC-CC----CC-CceEEEEE
Q 040165 176 RDVHYNLGVKLFYGTESP-PKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGE-AC----HP-RSVSLGVV 246 (358)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~-~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~-P~----~~-~~~~l~~~ 246 (358)
+....... .+...... -.+++. +|. .|++..+ ..|..+|..+++|..+.. +. .. ....+.+.
T Consensus 295 ~~~~~~~~--~~~~l~~~~i~~i~~D~~g~-lWigt~~------~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 295 ASYSSNPV--ENGSLSQRSVRSIFMDSQGG-MWLGTYF------GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp EEECCCTT--STTSCSSSCEEEEEECTTSC-EEEEESS------SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred EEEecCCC--CCCCCCCCcEEEEEEeCCcC-EEEEECC------CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 77653100 01111111 122332 354 4666653 378999999988887633 21 11 23344543
Q ss_pred -CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEee--cC-CccccCceeeEEEEeeecCCCc-EEEEEcCcce
Q 040165 247 -GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKID--ND-IMVRYHGSLVTLCTATGTDGGD-EIIMINKWRE 321 (358)
Q Consensus 247 -~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~--~~-~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~ 321 (358)
+|.|.+.+ . ..-+..|..+. ..+.....-. .. .+. ......++. ..+|+ |++...+.+
T Consensus 366 ~~g~lWiGt-----~--~~Gl~~~~~~~----~~~~~~~~~~~~~~~~l~--~~~v~~i~~---d~~g~~lWigt~~~G- 428 (795)
T 4a2l_A 366 KDKNLWIGT-----N--DGGLNLYNPIT----QRFTSYTLQEDESARGIG--SNNIKAVYV---DEKKSLVYIGTHAGG- 428 (795)
T ss_dssp TTSCEEEEE-----S--SSCEEEECTTT----CCEEEECCC------CCS--CSCEEEEEE---ETTTTEEEEEETTTE-
T ss_pred CCCCEEEEE-----C--CCCeEEEcCCC----CcEEEEecCCCCcccCCC--CccEEEEEE---cCCCCEEEEEeCcCc-
Confidence 77888876 2 12344443322 3443322100 00 010 111333444 45788 888776555
Q ss_pred EEEEECCCCeEEEe
Q 040165 322 FISCNLNERTLEEI 335 (358)
Q Consensus 322 l~~yd~~t~~~~~v 335 (358)
++.||+++++++.+
T Consensus 429 l~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 429 LSILHRNSGQVENF 442 (795)
T ss_dssp EEEEETTTCCEEEE
T ss_pred eeEEeCCCCcEEEe
Confidence 99999999988876
No 136
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=72.96 E-value=41 Score=28.24 Aligned_cols=148 Identities=8% Similarity=0.029 Sum_probs=75.4
Q ss_pred ccceEEEEEEcCCC--ceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCC-eeEEecCCC
Q 040165 160 CLRVLLKVFSMKAF--SWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE-KFCRVGEAC 236 (358)
Q Consensus 160 ~~~~~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~-~~~~i~~P~ 236 (358)
.....+.+++.+++ .|+.-.. -. .......+.-+|.++. ... ..|..||+..+ .|+ +..|.
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~-----~~--~~~~~~~~~pdG~ilv-s~~-------~~V~~~d~~G~~~W~-~~~~~ 75 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLE-----KG--WECNSVAATKAGEILF-SYS-------KGAKMITRDGRELWN-IAAPA 75 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECC-----TT--CCCCEEEECTTSCEEE-ECB-------SEEEEECTTSCEEEE-EECCT
T ss_pred CCCCEEEEEECCCCeEEEEeCCC-----cc--CCCcCeEECCCCCEEE-eCC-------CCEEEECCCCCEEEE-EcCCC
Confidence 45677888888787 4865432 00 0011122334788777 333 37999999433 333 34442
Q ss_pred CCCceEEEE-ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEE
Q 040165 237 HPRSVSLGV-VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIM 315 (358)
Q Consensus 237 ~~~~~~l~~-~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 315 (358)
......... .+|+++++.. . ..-.++.++..+ +.-|.. .+... ..........+.. ..+|++++.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~-----~--~~~~v~~vd~~G-k~l~~~--~~~~~-~~~~~~~~~~v~~---~~~G~~lv~ 141 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWC-----G--HPSTILEVNMKG-EVLSKT--EFETG-IERPHAQFRQINK---NKKGNYLVP 141 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEE-----S--TTEEEEEECTTS-CEEEEE--EECCS-CSSGGGSCSCCEE---CTTSCEEEE
T ss_pred CccccccEECCCCCEEEEec-----C--CCCEEEEEeCCC-CEEEEE--eccCC-CCcccccccCceE---CCCCCEEEE
Confidence 111112233 3788777762 1 134567776532 234443 22211 0011111222344 567887777
Q ss_pred EcCcceEEEEECCCCeEEEeecc
Q 040165 316 INKWREFISCNLNERTLEEIYRP 338 (358)
Q Consensus 316 ~~~~~~l~~yd~~t~~~~~v~~~ 338 (358)
......++.||++ ++..+-++.
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~ 163 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKL 163 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEEC
T ss_pred ecCCCEEEEECCC-CCEEEEEEC
Confidence 6655569999998 554443344
No 137
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=72.87 E-value=40 Score=28.00 Aligned_cols=96 Identities=11% Similarity=0.046 Sum_probs=53.4
Q ss_pred cEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 217 PVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
..|..||+.+.+-.. +..... ....+.-. +|+|+..+ ....+.+|.++. .+ ....+....
T Consensus 205 g~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~l~~~~-------~dg~v~iwd~~~----~~--~~~~~~~~~---- 266 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEGHES-FVYCIKLLPNGDIVSCG-------EDRTVRIWSKEN----GS--LKQVITLPA---- 266 (313)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSCEEEEE-------TTSEEEEECTTT----CC--EEEEEECSS----
T ss_pred CeEEEEECCchhhhhhhhcCCc-eEEEEEEecCCCEEEEe-------cCCEEEEEECCC----Cc--eeEEEeccC----
Confidence 489999998765432 222211 12333333 56543332 346899998765 22 333333221
Q ss_pred CceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 295 HGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.....+++ ..+|.++....+. .+..||++++++...
T Consensus 267 -~~i~~~~~---~~~~~~~~~~~dg-~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 267 -ISIWSVDC---MSNGDIIVGSSDN-LVRIFSQEKSRWASE 302 (313)
T ss_dssp -SCEEEEEE---CTTSCEEEEETTS-CEEEEESCGGGCCC-
T ss_pred -ceEEEEEE---ccCCCEEEEeCCC-cEEEEeCCCCceeeh
Confidence 12455555 6677766555555 599999998877544
No 138
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=72.28 E-value=46 Score=28.45 Aligned_cols=193 Identities=8% Similarity=0.003 Sum_probs=97.6
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-++.....+..+.+||..+++....-..... ....+.+.|.. ++-+.+ .....+.+|+.+++.=...-.
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~----~~~~~~~spdg-~~l~~g--~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV----DAWTLAFSPDS-QYLATG--THVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT----CCCCEEECTTS-SEEEEE--CTTSEEEEEETTTCSEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc----cEEEEEECCCC-CEEEEE--cCCCcEEEEEcCCCceeEEec
Confidence 33444444434677889999888765432211111 12234555543 333322 345678888887764321110
Q ss_pred ccccccccccCCCCceEE--ECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEeec
Q 040165 181 NLGVKLFYGTESPPKGCL--FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVCC 256 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~~ 256 (358)
.. . ..-.++. -+|.....+... ..|..+|+.+.+... +..... ....+.-. +|++.+.+
T Consensus 162 -----~~--~-~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~-- 224 (321)
T 3ow8_A 162 -----TR--G-KFILSIAYSPDGKYLASGAID------GIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTA-- 224 (321)
T ss_dssp -----CS--S-SCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEE--
T ss_pred -----CC--C-ceEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEE--
Confidence 00 0 0001111 245544444432 478889998876432 222211 12233333 67665555
Q ss_pred ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 257 SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.....+.+|.++. .. ....+.- +......+++ ..+|..++.....+.+..+|+++++....
T Consensus 225 ----s~dg~i~iwd~~~----~~--~~~~~~~-----h~~~v~~~~~---sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 225 ----SDDGYIKIYDVQH----AN--LAGTLSG-----HASWVLNVAF---CPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp ----CTTSCEEEEETTT----CC--EEEEECC-----CSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ----cCCCeEEEEECCC----cc--eeEEEcC-----CCCceEEEEE---CCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence 2346799998865 12 2233322 2222455566 55677555544434599999998876444
No 139
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=72.24 E-value=43 Score=28.12 Aligned_cols=184 Identities=12% Similarity=0.042 Sum_probs=91.5
Q ss_pred eCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
...+.+.|||..+++....-.... .....+.+.+.. ++-+.+ .....+.+|+..++.-... +....
T Consensus 42 ~~dg~i~iw~~~~~~~~~~~~~h~----~~v~~~~~~~~~-~~l~s~--~~d~~i~vwd~~~~~~~~~-------~~~~~ 107 (312)
T 4ery_A 42 SADKLIKIWGAYDGKFEKTISGHK----LGISDVAWSSDS-NLLVSA--SDDKTLKIWDVSSGKCLKT-------LKGHS 107 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS----SCEEEEEECTTS-SEEEEE--ETTSEEEEEETTTCCEEEE-------EECCS
T ss_pred eCCCeEEEEeCCCcccchhhccCC----CceEEEEEcCCC-CEEEEE--CCCCEEEEEECCCCcEEEE-------EcCCC
Confidence 355667788887776544322111 114456666643 333333 3456789999887643211 10000
Q ss_pred CCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcE
Q 040165 191 ESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDF 266 (358)
Q Consensus 191 ~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~ 266 (358)
..-.++.+ +|.+...+... ..|..+|+.+.+... +..... ....+.-. +|++.+.+. ....+
T Consensus 108 -~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~------~d~~i 173 (312)
T 4ery_A 108 -NYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSS------YDGLC 173 (312)
T ss_dssp -SCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEE------TTSCE
T ss_pred -CCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEEecCCCC-cEEEEEEcCCCCEEEEEe------CCCcE
Confidence 00011111 34433333332 478889998765432 222111 12223332 666666552 34679
Q ss_pred EEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 267 ELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 267 ~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.+|.+.. .. ....+.... ......+++ ..+|+.++.....+.+..||+++++....
T Consensus 174 ~~wd~~~----~~--~~~~~~~~~----~~~~~~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 174 RIWDTAS----GQ--CLKTLIDDD----NPPVSFVKF---SPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp EEEETTT----CC--EEEEECCSS----CCCEEEEEE---CTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEECCC----Cc--eeeEEeccC----CCceEEEEE---CCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 9998764 12 222222111 111344555 66777555444334599999998876554
No 140
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=71.95 E-value=78 Score=30.98 Aligned_cols=96 Identities=10% Similarity=0.151 Sum_probs=56.9
Q ss_pred cEEEEEECCCCeeEEe-cCCCCC-CceEEEEE-C--CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCc
Q 040165 217 PVIIAFDLAEEKFCRV-GEACHP-RSVSLGVV-G--GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIM 291 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~i-~~P~~~-~~~~l~~~-~--g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~ 291 (358)
..|..+|+.++++..+ .+..+. ....+.-. + |.+.+.++ ....+.+|.++. +.|..+..+....
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s------~Dg~I~vwd~~~----~~~~~~~~~~~h~- 99 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS------YDGKVLIWKEEN----GRWSQIAVHAVHS- 99 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE------TTSCEEEEEEET----TEEEEEEEECCCS-
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe------CCCeEEEEECCC----CcccccccccCCC-
Confidence 4788888887766655 233222 22333332 3 66655552 346899999986 4676666665332
Q ss_pred cccCceeeEEEEeeecCC--CcEEEEEcCcceEEEEECCCC
Q 040165 292 VRYHGSLVTLCTATGTDG--GDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~--g~i~~~~~~~~~l~~yd~~t~ 330 (358)
.....+++ ..+ |++++.....+.+..||++++
T Consensus 100 ----~~V~~v~~---sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 100 ----ASVNSVQW---APHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp ----SCEEEEEE---CCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred ----CCeEEEEE---CCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 12444555 444 665555544446999999877
No 141
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=71.60 E-value=36 Score=28.76 Aligned_cols=111 Identities=9% Similarity=-0.108 Sum_probs=58.7
Q ss_pred Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCC
Q 040165 200 NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVH 277 (358)
Q Consensus 200 ~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~ 277 (358)
+|. +||..... ..|..+|.. ++.+.+..|... ...++.. +|+|++.. . ....+.+|..+
T Consensus 55 ~g~~l~~~d~~~------~~i~~~~~~-g~~~~~~~~~~~-~~gl~~d~dG~l~v~~-----~-~~~~v~~~~~~----- 115 (305)
T 3dr2_A 55 AQRTLVWSDLVG------RRVLGWRED-GTVDVLLDATAF-TNGNAVDAQQRLVHCE-----H-GRRAITRSDAD----- 115 (305)
T ss_dssp GGTEEEEEETTT------TEEEEEETT-SCEEEEEESCSC-EEEEEECTTSCEEEEE-----T-TTTEEEEECTT-----
T ss_pred CCCEEEEEECCC------CEEEEEeCC-CCEEEEeCCCCc-cceeeECCCCCEEEEE-----C-CCCEEEEECCC-----
Confidence 454 89987664 589999984 555555444221 2233433 78877665 2 22345444332
Q ss_pred CceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc-----------------CcceEEEEECCCCeEEEe
Q 040165 278 SSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN-----------------KWREFISCNLNERTLEEI 335 (358)
Q Consensus 278 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-----------------~~~~l~~yd~~t~~~~~v 335 (358)
++........... ......-+++ ..+|.+++... ....|+.||+++++++.+
T Consensus 116 g~~~~~~~~~~~~---~~~~~~~i~~---d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 116 GQAHLLVGRYAGK---RLNSPNDLIV---ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp SCEEEEECEETTE---ECSCCCCEEE---CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred CCEEEEEeccCCC---ccCCCCCEEE---CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 2333322111100 0011233555 56788888521 112599999998888766
No 142
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=71.58 E-value=46 Score=28.23 Aligned_cols=196 Identities=9% Similarity=0.007 Sum_probs=94.6
Q ss_pred cceEEEEEeCCceEEEEcccccc--eeccCCCCCCCCCCceEEEeEeC---CCCCeEEEEEEccceEEEEEEcCCCceEe
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRA--HKKLPDPDISLGSPYLYGFGYDS---STDDYKVLAVSCLRVLLKVFSMKAFSWRD 177 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~--~~~lP~~~~~~~~~~~~~~~~d~---~~~~ykvv~~~~~~~~~~vyss~t~~W~~ 177 (358)
+|-.++.......+.+||..+++ ...+........ .....+.+.+ ..+.+-+++ .....+.+|+.+++.=..
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK-RDCWTVAFGNAYNQEERVVCAG--YDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC-CCEEEEEEECCCC-CCCEEEEE--ETTSEEEEEETTTTEEEE
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC-CceEEEEEEeccCCCCCEEEEE--ccCCeEEEEECccCceee
Confidence 44444443467788999998875 223322221111 1123333322 123333333 345689999998875322
Q ss_pred cccccccccccccCCCCceEEE-----CceEEEEeecCCCCCCCcEEEEEECCCCee----EEecCCCCC-CceEEEEE-
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF-----NGALHWLVSGFHFGSQDPVIIAFDLAEEKF----CRVGEACHP-RSVSLGVV- 246 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~-----~G~lywl~~~~~~~~~~~~i~~fD~~~~~~----~~i~~P~~~-~~~~l~~~- 246 (358)
... .. ..-.++.+ +|.....+... ..|..||+.+.+- .......+. ....+.-.
T Consensus 205 ~~~-----~~----~~v~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (357)
T 3i2n_A 205 ETN-----IK----NGVCSLEFDRKDISMNKLVATSLE------GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP 269 (357)
T ss_dssp EEE-----CS----SCEEEEEESCSSSSCCEEEEEEST------TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET
T ss_pred ecC-----CC----CceEEEEcCCCCCCCCEEEEECCC------CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC
Confidence 211 00 11112222 45555554443 4788888776432 111111122 22334443
Q ss_pred CCe-eEEEeecccccCCCCcEEEEEEccCCCC-------------CceeEEEEeecCCccccCceeeEEEEeeecCCCcE
Q 040165 247 GGC-LSLNVCCSNCVDKTTDFELWVMKQYGVH-------------SSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDE 312 (358)
Q Consensus 247 ~g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~~-------------~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i 312 (358)
+|+ +.+.+ .....+.+|.++..... +++..+..+.... .....+++ ..+|+.
T Consensus 270 ~~~~~l~~~------~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~v~~~~~---s~~~~~ 335 (357)
T 3i2n_A 270 QNRELFLTA------GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST-----QPISSLDW---SPDKRG 335 (357)
T ss_dssp TEEEEEEEE------ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS-----SCEEEEEE---CSSSTT
T ss_pred CCCcEEEEE------eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC-----CCeeEEEE---cCCCCe
Confidence 566 44444 23468999999753211 1345555554322 22455666 666774
Q ss_pred EE-EEcCcceEEEEECCCC
Q 040165 313 II-MINKWREFISCNLNER 330 (358)
Q Consensus 313 ~~-~~~~~~~l~~yd~~t~ 330 (358)
++ .....+.+..||+.+.
T Consensus 336 l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 336 LCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEETTSEEEEEEECC-
T ss_pred EEEEecCCCcEEEEECCCc
Confidence 44 4443335999998764
No 143
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=71.51 E-value=47 Score=28.27 Aligned_cols=202 Identities=7% Similarity=-0.006 Sum_probs=95.7
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe-ccc-
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD-VHY- 180 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~-~~~- 180 (358)
+|-+++.......+.|||..+++....-..-.. .......+.+++.. .+-+.+ .....+.+|+..+++-.. ...
T Consensus 127 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~ 202 (366)
T 3k26_A 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLLG-EKIMSC--GMDHSLKLWRINSKRMMNAIKES 202 (366)
T ss_dssp CTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTTS-SEEEEE--ETTSCEEEEESCSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECCCC-CEEEEe--cCCCCEEEEECCCCcccccccee
Confidence 455444434677888999888766544211000 11124556677743 333333 245678899888753211 000
Q ss_pred ---ccc-c---------ccc-----cccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCee------------E
Q 040165 181 ---NLG-V---------KLF-----YGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF------------C 230 (358)
Q Consensus 181 ---~~~-~---------~~~-----~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~------------~ 230 (358)
.++ . ..+ ......-.++.++|.+...+... ..|..+|+.+..- .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCE------NAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSS------SEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred EEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecC------CEEEEEeCCCccccccccccCCcchh
Confidence 000 0 000 00111123444446644444332 4788899876532 1
Q ss_pred Ee-cCCCC--C-CceEEEEEC--CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEe
Q 040165 231 RV-GEACH--P-RSVSLGVVG--GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTA 304 (358)
Q Consensus 231 ~i-~~P~~--~-~~~~l~~~~--g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~ 304 (358)
.+ .++.+ . ..+.. ..+ |++.+++ .....+.+|.++... ........+.... .......+++
T Consensus 277 ~~~~~~~~~~~v~~~~~-s~~~~~~~l~~~------~~dg~i~vwd~~~~~--~~~~~~~~~~~~~---~~~~v~~~~~- 343 (366)
T 3k26_A 277 ILGRFDYSQCDIWYMRF-SMDFWQKMLALG------NQVGKLYVWDLEVED--PHKAKCTTLTHHK---CGAAIRQTSF- 343 (366)
T ss_dssp EEEEEECSSCCSSCCCC-EECTTSSEEEEE------CTTSCEEEEECCSSS--GGGCEEEEECCTT---CCSCEEEEEE-
T ss_pred eeccccccCCcEEEEEE-cCCCCCcEEEEE------ecCCcEEEEECCCCC--CccccceEEcccc---cCCceEEEEe-
Confidence 11 11111 1 11111 224 6766665 234689999997621 2222333443321 0122455566
Q ss_pred eecCCCcEEEEEcCcceEEEEECCC
Q 040165 305 TGTDGGDEIIMINKWREFISCNLNE 329 (358)
Q Consensus 305 ~~~~~g~i~~~~~~~~~l~~yd~~t 329 (358)
..+|+.++.....+.+..||+.+
T Consensus 344 --s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 344 --SRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp --CTTSSEEEEEETTSEEEEEEC--
T ss_pred --CCCCCeEEEEeCCCEEEEEEecC
Confidence 56777665554444599999864
No 144
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=71.46 E-value=51 Score=28.71 Aligned_cols=199 Identities=9% Similarity=-0.007 Sum_probs=93.0
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
-+.+|-+++.......+.++|...+....+.... .....+.+.+.. .+-+.+ .....+.+|+..++.-...-
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~--~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWNKTGALLNVLNFHR-----APIVSVKWNKDG-THIISM--DVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSCEEEEECCCC-----SCEEEEEECTTS-SEEEEE--ETTCCEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCC-----ccEEEEEECCCC-CEEEEE--ecCCeEEEEECCCCcEEEEe
Confidence 3345544444346677889984333333333211 124456666643 333332 34567889998877543221
Q ss_pred cccccc---cc---c-ccCC-CCceE-EECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CC
Q 040165 180 YNLGVK---LF---Y-GTES-PPKGC-LFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GG 248 (358)
Q Consensus 180 ~~~~~~---~~---~-~~~~-~~~~v-~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g 248 (358)
...... .. . .... ..... .-+|.+ ..+... ..|..||+.+.+... +.... .....+... +|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~ 259 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKF-VIPGPK------GAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTN 259 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTEE-EEECGG------GCEEEEETTCSSCSEEECCCS-SCEEEEEEETTT
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCEE-EEEcCC------CeEEEEEcCCCceeeeeccCC-CceEEEEECCCC
Confidence 100000 00 0 0000 11122 234443 333332 478999998764422 22111 112333433 66
Q ss_pred eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECC
Q 040165 249 CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLN 328 (358)
Q Consensus 249 ~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~ 328 (358)
++.+++. ....+.+|.++.. . .+..+... ......+++ ..+| .++.....+.+..||++
T Consensus 260 ~~l~~~~------~d~~i~i~d~~~~----~--~~~~~~~~-----~~~i~~~~~---~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 260 KLLLSAS------DDGTLRIWHGGNG----N--SQNCFYGH-----SQSIVSASW---VGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp TEEEEEE------TTSCEEEECSSSB----S--CSEEECCC-----SSCEEEEEE---ETTT-EEEEEETTSEEEEEETT
T ss_pred CEEEEEc------CCCEEEEEECCCC----c--cceEecCC-----CccEEEEEE---CCCC-EEEEEeCCCcEEEEECC
Confidence 6555552 3467999987652 1 11222211 112344444 4455 44444333359999998
Q ss_pred CCeEEEe
Q 040165 329 ERTLEEI 335 (358)
Q Consensus 329 t~~~~~v 335 (358)
+++....
T Consensus 319 ~~~~~~~ 325 (425)
T 1r5m_A 319 QNTLLAL 325 (425)
T ss_dssp TTEEEEE
T ss_pred CCcEeEe
Confidence 8876554
No 145
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=71.33 E-value=46 Score=28.10 Aligned_cols=203 Identities=9% Similarity=-0.005 Sum_probs=98.3
Q ss_pred EEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccc
Q 040165 106 VCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVK 185 (358)
Q Consensus 106 l~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 185 (358)
|++.......++.++| +++...+.... ....++.+|+..+ .+++- .....+.+|+.. ++.+.+...
T Consensus 59 l~~~d~~~~~i~~~~~-~g~~~~~~~~~-----~~~~gl~~d~dG~--l~v~~-~~~~~v~~~~~~-g~~~~~~~~---- 124 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE-DGTVDVLLDAT-----AFTNGNAVDAQQR--LVHCE-HGRRAITRSDAD-GQAHLLVGR---- 124 (305)
T ss_dssp EEEEETTTTEEEEEET-TSCEEEEEESC-----SCEEEEEECTTSC--EEEEE-TTTTEEEEECTT-SCEEEEECE----
T ss_pred EEEEECCCCEEEEEeC-CCCEEEEeCCC-----CccceeeECCCCC--EEEEE-CCCCEEEEECCC-CCEEEEEec----
Confidence 4444245677888898 56554443221 1245677777543 22221 233567778775 666554321
Q ss_pred ccc-ccCCCCc-eEEECceEEEEe----ecC-------CCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCe-e
Q 040165 186 LFY-GTESPPK-GCLFNGALHWLV----SGF-------HFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGC-L 250 (358)
Q Consensus 186 ~~~-~~~~~~~-~v~~~G~lywl~----~~~-------~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~-L 250 (358)
... ....... .+.-+|.+|+.. ... ........|..+|+.++++..+. .... .-.++.. +|+ |
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~-p~gl~~spdg~~l 202 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDH-PNGLAFSPDEQTL 202 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESS-EEEEEECTTSSEE
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCC-CcceEEcCCCCEE
Confidence 000 0101112 222378877742 100 00001257999999888877654 3111 1223333 665 6
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
+++..... ......+.+|.++. ........+.... ......+++ ..+|+|++...+ .|..||++.+
T Consensus 203 yv~~~~~~-~~~~~~i~~~~~~~----~~l~~~~~~~~~~----~~~pdgi~~---d~~G~lwv~~~~--gv~~~~~~g~ 268 (305)
T 3dr2_A 203 YVSQTPEQ-GHGSVEITAFAWRD----GALHDRRHFASVP----DGLPDGFCV---DRGGWLWSSSGT--GVCVFDSDGQ 268 (305)
T ss_dssp EEEECCC----CCCEEEEEEEET----TEEEEEEEEECCS----SSCCCSEEE---CTTSCEEECCSS--EEEEECTTSC
T ss_pred EEEecCCc-CCCCCEEEEEEecC----CCccCCeEEEECC----CCCCCeEEE---CCCCCEEEecCC--cEEEECCCCC
Confidence 55541100 00024565565553 1222211111100 011233455 667887776633 3999999888
Q ss_pred eEEEeeccc
Q 040165 331 TLEEIYRPN 339 (358)
Q Consensus 331 ~~~~v~~~~ 339 (358)
....+ ...
T Consensus 269 ~~~~~-~~~ 276 (305)
T 3dr2_A 269 LLGHI-PTP 276 (305)
T ss_dssp EEEEE-ECS
T ss_pred EEEEE-ECC
Confidence 88877 554
No 146
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=70.58 E-value=55 Score=28.71 Aligned_cols=100 Identities=10% Similarity=0.085 Sum_probs=50.3
Q ss_pred cEEEEEECCCCee--EEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC-ccc
Q 040165 217 PVIIAFDLAEEKF--CRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI-MVR 293 (358)
Q Consensus 217 ~~i~~fD~~~~~~--~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~-~~~ 293 (358)
..|..+|+.+.+- ..+..........+...+|++.+.+ .....+.+|.+.+.+.. .. ...+.... +..
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~------~~d~~v~iw~~~~~~~~--~~-~~~~~~~~~~~~ 383 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSS------GFDTSIKLDIISDPESE--RP-AIEFETPTFLVS 383 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEE------TTTEEEEEEEECCTTCC--SC-EECTTSCEEECC
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEe------cCCccEEEEeccCCCCC--cc-ceeccCccEEcc
Confidence 4899999987542 2222221112233444578766655 23568999999863211 11 11111110 111
Q ss_pred cCceeeEEEEeeecCCCc----EEEEEcCcceEEEEECCC
Q 040165 294 YHGSLVTLCTATGTDGGD----EIIMINKWREFISCNLNE 329 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~g~----i~~~~~~~~~l~~yd~~t 329 (358)
.......+++ ..+|. |+...... .+..|+++.
T Consensus 384 ~~~~v~~~~~---s~~~~~~g~l~a~g~~g-~~~~~~~~~ 419 (420)
T 3vl1_A 384 NDDAVSQFCY---VSDDESNGEVLEVGKNN-FCALYNLSN 419 (420)
T ss_dssp SSCCCCEEEE---ECCSSSSCEEEEEETTT-EEEEEESCC
T ss_pred CCcceEEEEE---ccCCCCcceEEEEcCCc-eEEEEeccC
Confidence 2222344454 33444 66666554 488888764
No 147
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=70.21 E-value=78 Score=30.33 Aligned_cols=160 Identities=11% Similarity=-0.047 Sum_probs=79.3
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCc
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDP 217 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~ 217 (358)
..++.||+..+... ..-.....+..++..+..++.+.. ... ....++.+ +|.|||..... .
T Consensus 351 ~~~ld~d~~~~~ly--~sD~~~~~I~r~~~~g~~~~~v~~-------~~~-~~p~GlAvD~~~~~lY~tD~~~------~ 414 (619)
T 3s94_A 351 AIAIDYDPVEGYIY--WTDDEVRAIRRSFIDGSGSQFVVT-------AQI-AHPDGIAVDWVARNLYWTDTGT------D 414 (619)
T ss_dssp EEEEEEETTTTEEE--EEETTTTEEEEEETTSCSCEEEEC-------SSC-SCCCEEEEETTTTEEEEEETTT------T
T ss_pred cEEEEEEcCCCeEE--EEeCCCCeEEEEEcCCCccEEEEE-------CCC-CCcCceEEecccCcEEEEeCCC------C
Confidence 56788888765322 221234456666665555544322 111 12334443 68999987653 5
Q ss_pred EEEEEECCCCeeEEecC-CCCCCceEEEEE--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 218 VIIAFDLAEEKFCRVGE-ACHPRSVSLGVV--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 218 ~i~~fD~~~~~~~~i~~-P~~~~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
.|.++++....-..+-- -.. .-..|+.- +|.||... ......+....|+. ... + .+-...+
T Consensus 415 ~I~v~~~~G~~~~~l~~~~l~-~P~~iavdp~~G~ly~tD-----~g~~~~I~r~~~dG--~~~---~--~l~~~~l--- 478 (619)
T 3s94_A 415 RIEVTRLNGTMRKILISEDLE-EPRAIVLDPMVGYMYWTD-----WGEIPKIERAALDG--SDR---V--VLVNTSL--- 478 (619)
T ss_dssp EEEEEETTSCSCEEEECTTCC-SEEEEEEETTTTEEEEEE-----CSSSCEEEEEETTS--CSC---E--EEECSSC---
T ss_pred cEEEEeCCCCeEEEEEECCCC-CeeeEEEEcCCCcEEEec-----CCCCCEEEEEccCC--Ccc---E--EEEeCCC---
Confidence 89999988664333321 121 12345554 68888776 22223343333332 211 1 1111111
Q ss_pred CceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 295 HGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..|.++..+..++.||+.....+.+..+|++...-+.+
T Consensus 479 ---~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 516 (619)
T 3s94_A 479 ---GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVL 516 (619)
T ss_dssp ---SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE
T ss_pred ---CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 34444433445555766665544566776664443333
No 148
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=69.51 E-value=86 Score=30.52 Aligned_cols=183 Identities=6% Similarity=-0.028 Sum_probs=88.3
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccC
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
..+.+.|||..+++....-..+. .....+.+.+.. .+-+++ .....+.+|+..++.....-.. ..
T Consensus 33 ~~g~v~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~-~~l~~~--~~dg~i~vw~~~~~~~~~~~~~----~~---- 97 (814)
T 3mkq_A 33 YSGRVEIWNYETQVEVRSIQVTE----TPVRAGKFIARK-NWIIVG--SDDFRIRVFNYNTGEKVVDFEA----HP---- 97 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCS----SCEEEEEEEGGG-TEEEEE--ETTSEEEEEETTTCCEEEEEEC----CS----
T ss_pred CCCEEEEEECCCCceEEEEecCC----CcEEEEEEeCCC-CEEEEE--eCCCeEEEEECCCCcEEEEEec----CC----
Confidence 45567788887766543222111 114456666653 333332 3467899999988765332110 00
Q ss_pred CCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCC-eeEEecCCCCC-CceEEEEE--CCeeEEEeecccccCCCCc
Q 040165 192 SPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEE-KFCRVGEACHP-RSVSLGVV--GGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 192 ~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~-~~~~i~~P~~~-~~~~l~~~--~g~L~lv~~~~~~~~~~~~ 265 (358)
..-.++.+ +|..-..+... ..|..+|+.++ ..... +..+. ....+.-. +|.+.+++. ....
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~ 164 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPKDPSTFASGC------LDRT 164 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEE-EECCSSCEEEEEEETTEEEEEEEEE------TTSE
T ss_pred CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEE-EcCCCCcEEEEEEEcCCCCEEEEEe------CCCe
Confidence 00111111 34433333332 47888998875 32222 11111 12233333 455555552 3468
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecC--CCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTD--GGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
+.+|.++... .... +.... ......+++ .. +|..++.....+.+..||+++++....
T Consensus 165 v~vwd~~~~~--~~~~----~~~~~----~~~v~~~~~---~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 223 (814)
T 3mkq_A 165 VKVWSLGQST--PNFT----LTTGQ----ERGVNYVDY---YPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223 (814)
T ss_dssp EEEEETTCSS--CSEE----EECCC----TTCCCEEEE---CCSTTCCEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EEEEECCCCc--ceeE----EecCC----CCCEEEEEE---EECCCCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 9999886521 2221 11111 011333444 33 555555554444588899888765443
No 149
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=68.96 E-value=65 Score=28.90 Aligned_cols=200 Identities=12% Similarity=0.065 Sum_probs=99.2
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCC--CCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSS--TDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~--~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+|-.++.......+++++..+++....+.............+.+.|. .+.+-+.+ .....+.+|+..++.-...-.
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS--DRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE--ETTSCEEEEEESCTTCEEEEC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE--cCCCcEEEEECCCCceeeeee
Confidence 44333332455667777766655432010000000111344556665 23333333 345678888887765322100
Q ss_pred ccccccccccCCCCceEEE-CceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCC------C----------------
Q 040165 181 NLGVKLFYGTESPPKGCLF-NGALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEA------C---------------- 236 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P------~---------------- 236 (358)
......-.++.+ +|.+...+... ..|..+|+.+.+.. .++.+ +
T Consensus 238 -------~~h~~~v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 238 -------FGHKHFVSSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp -------CCCSSCEEEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred -------cCCCCceEEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 000011112222 67666555543 48999999887643 23321 0
Q ss_pred C-C-CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEE
Q 040165 237 H-P-RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEI 313 (358)
Q Consensus 237 ~-~-~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~ 313 (358)
. . ....+... +|+..+++ ......+.+|.+.+. ....+..+..+.... ...-+++ .. +.++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~-----~~~d~~i~iw~~~~~-~~~~l~~~~~~~~~~------~v~~~~~---~~-~~~~ 368 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFF-----VEATKCIIILEMSEK-QKGDLALKQIITFPY------NVISLSA---HN-DEFQ 368 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEE-----ETTCSEEEEEEECSS-STTCEEEEEEEECSS------CEEEEEE---ET-TEEE
T ss_pred cceEEEEEEEEeCCCCEEEEE-----ECCCCeEEEEEeccC-CCCceeeccEeccCC------ceEEEEe---cC-CcEE
Confidence 0 0 11233333 56666665 224578999999211 124677777776532 1344444 33 4455
Q ss_pred EEEcCc-------c--eEEEEECCCCeEE
Q 040165 314 IMINKW-------R--EFISCNLNERTLE 333 (358)
Q Consensus 314 ~~~~~~-------~--~l~~yd~~t~~~~ 333 (358)
+..... + .++.++.++++|+
T Consensus 369 v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 369 VTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 554331 1 4888899999886
No 150
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=68.48 E-value=61 Score=28.41 Aligned_cols=191 Identities=9% Similarity=0.006 Sum_probs=98.8
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce-Eec
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW-RDV 178 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W-~~~ 178 (358)
.+.+|-.++.......+.|||..+++.......+. .....+.+.+.. ++-+.+ .....+.+|+..+++= +..
T Consensus 105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~-~~l~s~--s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV----SEITKLKFFPSG-EALISS--SQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS----SCEEEEEECTTS-SEEEEE--ETTSEEEEEETTTCCCCEEE
T ss_pred EecCCCEEEEEECCCCEEEEeCCCcceeeeccccc----CccEEEEECCCC-CEEEEE--eCCCeEEEEeCCCCcCceEE
Confidence 34456544443567789999998887766532221 124556777753 333332 3456799999877531 111
Q ss_pred ccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCC-C-CCceEEEE--------
Q 040165 179 HYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEAC-H-PRSVSLGV-------- 245 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~-~-~~~~~l~~-------- 245 (358)
.. ....-.++.+ +|.....+... ..|..+|+.+.+-.. +..+. . .....+..
T Consensus 178 ~~---------h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 242 (420)
T 3vl1_A 178 IG---------HRATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 242 (420)
T ss_dssp EC---------CSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred cC---------CCCcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence 11 0001111222 45544444432 368889988765433 33321 1 11111111
Q ss_pred --------------ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc
Q 040165 246 --------------VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD 311 (358)
Q Consensus 246 --------------~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~ 311 (358)
.+|++.+++. ....+.+|.+... .....+... +......+++ ..+|.
T Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~------~~~~~~~~~----~~~~v~~~~~---~~~~~ 303 (420)
T 3vl1_A 243 HEISTSKKNNLEFGTYGKYVIAGH------VSGVITVHNVFSK------EQTIQLPSK----FTCSCNSLTV---DGNNA 303 (420)
T ss_dssp GGGCCCCCCTTCSSCTTEEEEEEE------TTSCEEEEETTTC------CEEEEECCT----TSSCEEEEEE---CSSCT
T ss_pred eecccCcccceEEcCCCCEEEEEc------CCCeEEEEECCCC------ceeEEcccc----cCCCceeEEE---eCCCC
Confidence 2566665552 3467999988651 123333221 1122445555 55666
Q ss_pred -EEEEEcCcceEEEEECCCCe
Q 040165 312 -EIIMINKWREFISCNLNERT 331 (358)
Q Consensus 312 -i~~~~~~~~~l~~yd~~t~~ 331 (358)
+++.....+.+..||+++++
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTT
T ss_pred CEEEEEeCCCeEEEEEcCCCc
Confidence 66665544469999999863
No 151
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=67.89 E-value=57 Score=27.87 Aligned_cols=210 Identities=11% Similarity=-0.028 Sum_probs=101.5
Q ss_pred eecceEEEEEeCCceEEEEccccc--ceeccCCCCC----CCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTR--AHKKLPDPDI----SLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS 174 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~--~~~~lP~~~~----~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~ 174 (358)
+.+|-+.+......++.++|+-.+ ....+..... ........++.+|+..+...|.-- .....+.+|+.....
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-~~~~~I~~~~~~g~~ 177 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-YCNSRIVQFSPSGKF 177 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-SSCCEEEEECTTSCE
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-CCCCeEEEEcCCCCE
Confidence 346666555335677888998655 2333322110 001112567788885555444331 135678888854433
Q ss_pred eEecccc-ccc-ccccccCCCCceEEE--C-ceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCC-CCCCceEEEEEC
Q 040165 175 WRDVHYN-LGV-KLFYGTESPPKGCLF--N-GALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEA-CHPRSVSLGVVG 247 (358)
Q Consensus 175 W~~~~~~-~~~-~~~~~~~~~~~~v~~--~-G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P-~~~~~~~l~~~~ 247 (358)
-+..... .+. ..+... ....++.+ + |.+|+..... ..|..||+.++++ ..+..+ .......++...
T Consensus 178 ~~~~~~~g~~~~~~~~~~-~~p~gia~d~~~g~l~v~d~~~------~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQF-SVPHSLALVPHLDQLCVADREN------GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp EEEECEECCSSSCCTTEE-SCEEEEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred EEEeccCCCCCCCCCccc-CCCcEEEEECCCCEEEEEECCC------CEEEEEECCCCcEEEEEeccccCCCcceeeecC
Confidence 2222210 000 000011 11334554 4 8888876554 5899999996665 445555 222122233333
Q ss_pred CeeEEEeecccc-cCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEE
Q 040165 248 GCLSLNVCCSNC-VDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCN 326 (358)
Q Consensus 248 g~L~lv~~~~~~-~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd 326 (358)
|.++...+...- ......+.+|.+++ ++ .+..+.... ........+++ ..+|.||+.....+++..|+
T Consensus 251 g~~~~~~g~~~v~~~~~~~v~~~~~~~----g~--~~~~~~~~~--~~~~~p~~ia~---~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQEPVQGFVMNFSS----GE--IIDVFKPVR--KHFDMPHDIVA---SEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TEEEEEECCCCTTCSCCCCEEEEETTT----CC--EEEEECCSS--SCCSSEEEEEE---CTTSEEEEEESSSCCEEEEE
T ss_pred CEEEEeCCCEEeccCCCcEEEEEEcCC----Ce--EEEEEcCCC--CccCCeeEEEE---CCCCCEEEEECCCCEEEEEe
Confidence 444333321100 01234677776654 22 223332111 11111334455 55678888776665688888
Q ss_pred CCC
Q 040165 327 LNE 329 (358)
Q Consensus 327 ~~t 329 (358)
++.
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 764
No 152
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=66.55 E-value=77 Score=28.81 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=46.2
Q ss_pred CCeeEEEeecccc-cCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEc-CcceEE
Q 040165 247 GGCLSLNVCCSNC-VDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMIN-KWREFI 323 (358)
Q Consensus 247 ~g~L~lv~~~~~~-~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~-~~~~l~ 323 (358)
+++||+....... ......=+||++|. ..+..+.+|+.... ..-+++ ..+|+ .++... ..+.|.
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~~------P~gia~---spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGHE------IDSINV---SQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEEE------ECEEEE---CCSSSCEEEEEETTTTEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCCC------cCeEEE---ccCCCEEEEEEcCCCCeEE
Confidence 5677777632100 00112346888886 57888888876431 344455 55676 555444 445699
Q ss_pred EEECCCCeEEEe
Q 040165 324 SCNLNERTLEEI 335 (358)
Q Consensus 324 ~yd~~t~~~~~v 335 (358)
++|.+|.+..+-
T Consensus 397 VID~~t~kvv~t 408 (426)
T 3c75_H 397 IYDAATGEELRS 408 (426)
T ss_dssp EEETTTCCEEEE
T ss_pred EEECCCCCEEEE
Confidence 999999987653
No 153
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=66.45 E-value=62 Score=27.71 Aligned_cols=204 Identities=9% Similarity=-0.098 Sum_probs=99.5
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
...+|.+.+.......++++||.+++...+.... ....+.+++.. .+- +.. ...+.+|+..+++.+.+.
T Consensus 57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~------~v~~i~~~~dg-~l~-v~~---~~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 57 DPASGTAWWFNILERELHELHLASGRKTVHALPF------MGSALAKISDS-KQL-IAS---DDGLFLRDTATGVLTLHA 125 (326)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS------CEEEEEEEETT-EEE-EEE---TTEEEEEETTTCCEEEEE
T ss_pred eCCCCEEEEEECCCCEEEEEECCCCcEEEEECCC------cceEEEEeCCC-eEE-EEE---CCCEEEEECCCCcEEEEe
Confidence 3334655555335677889999988766543221 13445566553 222 221 335888898888877654
Q ss_pred cccccccccccCC-CCceEE--ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCe-eEEEe
Q 040165 180 YNLGVKLFYGTES-PPKGCL--FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGC-LSLNV 254 (358)
Q Consensus 180 ~~~~~~~~~~~~~-~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~-L~lv~ 254 (358)
. .+..... ....+. -+|.+|+-............|..+| +++...+.-... ....++.. +|+ |++..
T Consensus 126 ~-----~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 126 E-----LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-IPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp C-----SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-SEEEEEECTTSCEEEEEE
T ss_pred e-----CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-ccCCeEEcCCCCEEEEEE
Confidence 3 1110000 011222 2678755443211111124788898 466554421111 11233433 664 55554
Q ss_pred ecccccCCCCcEEEEEEc-cCCCCCcee--E-EEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 255 CCSNCVDKTTDFELWVMK-QYGVHSSWE--R-LTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~-~~~~~~~W~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
.....+.+|.++ +.+ .... + ...++.. ......+++ ..+|++++.......+..||++.+
T Consensus 198 ------~~~~~I~~~d~~~~~G--l~~~~~~~~~~~~~~-----~~~p~gi~~---d~~G~lwva~~~~~~v~~~d~~g~ 261 (326)
T 2ghs_A 198 ------TKVNRLMRVPLDARTG--LPTGKAEVFIDSTGI-----KGGMDGSVC---DAEGHIWNARWGEGAVDRYDTDGN 261 (326)
T ss_dssp ------TTTCEEEEEEBCTTTC--CBSSCCEEEEECTTS-----SSEEEEEEE---CTTSCEEEEEETTTEEEEECTTCC
T ss_pred ------CCCCEEEEEEcccccC--CcccCceEEEECCCC-----CCCCCeeEE---CCCCCEEEEEeCCCEEEEECCCCC
Confidence 223456556554 111 0111 1 1112111 111233444 556778887644335999999766
Q ss_pred eEEEeeccc
Q 040165 331 TLEEIYRPN 339 (358)
Q Consensus 331 ~~~~v~~~~ 339 (358)
..+.+ ...
T Consensus 262 ~~~~i-~~~ 269 (326)
T 2ghs_A 262 HIARY-EVP 269 (326)
T ss_dssp EEEEE-ECS
T ss_pred EEEEE-ECC
Confidence 66666 554
No 154
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=66.36 E-value=52 Score=26.78 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=96.3
Q ss_pred EeecceEEEEEeCCceEEEEcccc-cceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE--ccceEEEEEEcCCCceE
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPST-RAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS--CLRVLLKVFSMKAFSWR 176 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T-~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~--~~~~~~~vyss~t~~W~ 176 (358)
-+-+|-.++. .....++++|..+ ++...+...... .....+.+.+.. ++-++... .....+.+++..++.-+
T Consensus 49 ~spdg~~l~~-~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~ 123 (297)
T 2ojh_A 49 WSPDGKYLLL-NSEGLLYRLSLAGDPSPEKVDTGFAT---ICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPR 123 (297)
T ss_dssp ECTTSSEEEE-EETTEEEEEESSSCCSCEECCCTTCC---CBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCE
T ss_pred ECCCCCEEEE-EcCCeEEEEeCCCCCCceEecccccc---ccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCceE
Confidence 3444544333 2456788999998 877766543311 011123444543 23222221 12456777777666654
Q ss_pred ecccccccccccccCCCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEE
Q 040165 177 DVHYNLGVKLFYGTESPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSL 252 (358)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~l 252 (358)
.+... .. ...+.+ +|. +++...... ...|..+|..+.....+..... ....+.-. +|+..+
T Consensus 124 ~~~~~-----~~-----~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 124 LMTKN-----LP-----SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEG-RNDGPDYSPDGRWIY 188 (297)
T ss_dssp ECCSS-----SS-----EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSS-CEEEEEECTTSSEEE
T ss_pred EeecC-----CC-----ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCC-ccccceECCCCCEEE
Confidence 44331 00 111111 454 443333321 1356666777666554422211 12223332 676555
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcC----------cce
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINK----------WRE 321 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~----------~~~ 321 (358)
+.. .....+.+|.++..+ ... ..+.... .....+++ ..+|+ |++...+ ...
T Consensus 189 ~~~-----~~~~~~~i~~~~~~~--~~~---~~~~~~~-----~~~~~~~~---s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 189 FNS-----SRTGQMQIWRVRVDG--SSV---ERITDSA-----YGDWFPHP---SPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp EEE-----CTTSSCEEEEEETTS--SCE---EECCCCS-----EEEEEEEE---CTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred EEe-----cCCCCccEEEECCCC--CCc---EEEecCC-----cccCCeEE---CCCCCEEEEEEcCCCCCcccccCceE
Confidence 442 224578999987422 222 2222211 11333455 55677 5554432 125
Q ss_pred EEEEECCCCeEEEee
Q 040165 322 FISCNLNERTLEEIY 336 (358)
Q Consensus 322 l~~yd~~t~~~~~v~ 336 (358)
++.+|+++++.+.+.
T Consensus 251 l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 251 VQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEETTSCSCEEEE
T ss_pred EEEEecCCCCceeee
Confidence 999999998877663
No 155
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=65.90 E-value=74 Score=28.43 Aligned_cols=199 Identities=10% Similarity=0.037 Sum_probs=97.0
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|+++.. ..++.+.|||..+++....-..+. .....+.+.+..+.-.++.. .....+.+++..++.-.....
T Consensus 171 ~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 171 AHGGILVSG-STDRTVRVWDIKKGCCTHVFEGHN----STVRCLDIVEYKNIKYIVTG-SRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp CSTTEEEEE-ETTSCEEEEETTTTEEEEEECCCS----SCEEEEEEEESSSCEEEEEE-ETTSCEEEEECCCCCCC----
T ss_pred cCCCEEEEE-eCCCCEEEEECCCCcEEEEECCCC----CccEEEEEecCCCCCEEEEE-cCCCcEEEeeCCCCccccccc
Confidence 445644443 577889999999887654322211 11334455543333333333 345678888887654211100
Q ss_pred c----------cc-----cccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEE
Q 040165 181 N----------LG-----VKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLG 244 (358)
Q Consensus 181 ~----------~~-----~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~ 244 (358)
. +. ..........-.++..+|.....+... ..|..+|+.+.+.... ..... ....+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~-~v~~~~ 317 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD------NTLIVWDVAQMKCLYILSGHTD-RIYSTI 317 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT------SCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEecCCCC-CEEEEE
Confidence 0 00 000000001112234455555544443 4789999987665332 22211 223333
Q ss_pred EE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEE
Q 040165 245 VV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFI 323 (358)
Q Consensus 245 ~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~ 323 (358)
-. +|...+.+. ....+.+|.++. + ..+..+.... .....+.+ +++.++.....+.+.
T Consensus 318 ~~~~~~~l~sg~------~dg~i~vwd~~~----~--~~~~~~~~h~-----~~v~~~~~-----~~~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 318 YDHERKRCISAS------MDTTIRIWDLEN----G--ELMYTLQGHT-----ALVGLLRL-----SDKFLVSAAADGSIR 375 (464)
T ss_dssp EETTTTEEEEEE------TTSCEEEEETTT----T--EEEEEECCCS-----SCEEEEEE-----CSSEEEEEETTSEEE
T ss_pred EcCCCCEEEEEe------CCCcEEEEECCC----C--cEEEEEeCCC-----CcEEEEEE-----cCCEEEEEeCCCcEE
Confidence 33 666655552 346799998864 1 2334443221 11333443 355454444333599
Q ss_pred EEECCCCeEEE
Q 040165 324 SCNLNERTLEE 334 (358)
Q Consensus 324 ~yd~~t~~~~~ 334 (358)
.||+++.+-..
T Consensus 376 vwd~~~~~~~~ 386 (464)
T 3v7d_B 376 GWDANDYSRKF 386 (464)
T ss_dssp EEETTTCCEEE
T ss_pred EEECCCCceee
Confidence 99998876443
No 156
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=65.87 E-value=64 Score=27.71 Aligned_cols=191 Identities=12% Similarity=0.090 Sum_probs=91.9
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNL 182 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~ 182 (358)
+|-++.....+..+.|||..++++.........+. .....+.+.|.. ++-+.+ .....+.+++..++.++.+..
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~g-~~l~s~--s~D~~v~iw~~~~~~~~~~~~-- 100 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ-RTVRKVAWSPCG-NYLASA--SFDATTCIWKKNQDDFECVTT-- 100 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS-SCEEEEEECTTS-SEEEEE--ETTSCEEEEEECCC-EEEEEE--
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC-CcEEEEEECCCC-CEEEEE--ECCCcEEEEEccCCCeEEEEE--
Confidence 34333332356667788877765432211111111 114456666643 343333 345667888888777654433
Q ss_pred ccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCC-eeEEec-CCCCC-CceEEEEE-CCeeEEEeec
Q 040165 183 GVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEE-KFCRVG-EACHP-RSVSLGVV-GGCLSLNVCC 256 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~-~~~~i~-~P~~~-~~~~l~~~-~g~L~lv~~~ 256 (358)
+.. ....-.++.+ +|.+...+... ..|..+|+.++ ....+. +..+. ....+.-. +|.+.+.+.
T Consensus 101 ---~~~-h~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s- 169 (345)
T 3fm0_A 101 ---LEG-HENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS- 169 (345)
T ss_dssp ---ECC-CSSCEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-
T ss_pred ---ccC-CCCCceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-
Confidence 111 0011112222 45544444432 46888888764 233222 12221 12223332 666655552
Q ss_pred ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEEC
Q 040165 257 SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNL 327 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~ 327 (358)
....+.+|.++. ..|.....+.-.. .....+++ ..+|+.++.....+.+..+|.
T Consensus 170 -----~d~~i~~w~~~~----~~~~~~~~~~~h~-----~~v~~l~~---sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 170 -----YDDTVKLYREEE----DDWVCCATLEGHE-----STVWSLAF---DPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp -----TTSCEEEEEEET----TEEEEEEEECCCS-----SCEEEEEE---CTTSSEEEEEETTSCEEEEEE
T ss_pred -----CCCcEEEEEecC----CCEEEEEEecCCC-----CceEEEEE---CCCCCEEEEEeCCCeEEEecc
Confidence 346799999875 5676666554322 22445555 556665544433334666664
No 157
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=65.83 E-value=61 Score=27.43 Aligned_cols=203 Identities=7% Similarity=0.041 Sum_probs=94.9
Q ss_pred ceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCC-CCeEEEEEEccceEEEEEEcCCC-ceEecccc
Q 040165 104 GLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSST-DDYKVLAVSCLRVLLKVFSMKAF-SWRDVHYN 181 (358)
Q Consensus 104 Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~-~~ykvv~~~~~~~~~~vyss~t~-~W~~~~~~ 181 (358)
|-+++....+..+.|||..++++..+-..... . .....+.+.|.. +.+-+.+ .....+.+++..++ .|......
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h-~-~~V~~v~~~p~~~g~~lasg--s~D~~i~lwd~~~~~~~~~~~~~ 146 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGH-D-SSVNSVCWAPHDYGLILACG--SSDGAISLLTYTGEGQWEVKKIN 146 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSSCCCEEEEECCC-S-SCCCEEEECCTTTCSCEEEE--CSSSCEEEEEECSSSCEEECCBT
T ss_pred CCEEEEEECCCEEEEEECCCCcceEEEEccCC-C-CceEEEEECCCCCCcEEEEE--cCCCCEEEEecCCCCCcceeeee
Confidence 54444434677889999988754332211111 1 112344556653 3333322 34567888888765 57543320
Q ss_pred cccccccccCCCCceEEE-------------------CceEEEEeecCCCCCCCcEEEEEECCC-CeeEEe-cCCCCCCc
Q 040165 182 LGVKLFYGTESPPKGCLF-------------------NGALHWLVSGFHFGSQDPVIIAFDLAE-EKFCRV-GEACHPRS 240 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~-------------------~G~lywl~~~~~~~~~~~~i~~fD~~~-~~~~~i-~~P~~~~~ 240 (358)
.... ..-.++.+ +|.. .+.+.. ...|-.+|+.+ +.|..+ .+..+...
T Consensus 147 -----~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~-----D~~v~lWd~~~~~~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 147 -----NAHT-IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR-FASGGC-----DNLIKLWKEEEDGQWKEEQKLEAHSDW 214 (316)
T ss_dssp -----TSSS-SCBCCCEECCCCCC------CCSCCCCCCCB-EECCBT-----TSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred -----cccc-CCcceEEEccccCCccccccccccCccccce-EEEecC-----CCeEEEEEeCCCCccceeeecccCCCc
Confidence 0000 00000110 0222 222222 13567778763 445544 33322212
Q ss_pred -eEEEEE-CC----eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEE
Q 040165 241 -VSLGVV-GG----CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEII 314 (358)
Q Consensus 241 -~~l~~~-~g----~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 314 (358)
..+.-. ++ .+.+.+ .....+.+|.+++.. ...|.... +. .+......+++ ..+|+++.
T Consensus 215 V~~v~~sp~~~~~~~~las~------s~D~~v~iw~~~~~~-~~~~~~~~-~~-----~~~~~v~~v~~---sp~g~~la 278 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASC------SQDGRVFIWTCDDAS-SNTWSPKL-LH-----KFNDVVWHVSW---SITANILA 278 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEE------ETTCEEEEEECSSTT-CCCCBCCE-EE-----ECSSCEEEEEE---CTTTCCEE
T ss_pred eEEEEecCCCCCCCceEEEE------cCCCeEEEEEccCcc-ccchhhhh-hh-----cCCCcEEEEEE---cCCCCEEE
Confidence 222222 32 444333 134689999987521 12343211 11 11122455566 66777555
Q ss_pred EEcCcceEEEEECC-CCeEEEeecc
Q 040165 315 MINKWREFISCNLN-ERTLEEIYRP 338 (358)
Q Consensus 315 ~~~~~~~l~~yd~~-t~~~~~v~~~ 338 (358)
.....+.+..++.. .++|+.+..+
T Consensus 279 s~~~D~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 279 VSGGDNKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp EEESSSCEEEEEECTTSCEEEEEEC
T ss_pred EEcCCCeEEEEEECCCCcEEEeeec
Confidence 44333348888876 5688877333
No 158
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=65.32 E-value=74 Score=28.20 Aligned_cols=195 Identities=12% Similarity=0.010 Sum_probs=99.1
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
+..+|.|.+.......+..+++.++....+...... ...++.+|+..+...+.- .....+++++.....-+.+.
T Consensus 124 d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~----~p~glavd~~~g~lY~~d--~~~~~I~~~~~dg~~~~~l~ 197 (386)
T 3v65_B 124 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE----SPGGLAVDWVHDKLYWTD--SGTSRIEVANLDGAHRKVLL 197 (386)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS----CCCCEEEETTTTEEEEEE--TTTTEEEECBTTSCSCEEEE
T ss_pred ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC----CccEEEEEeCCCeEEEEc--CCCCeEEEEeCCCCceEEee
Confidence 345677776633566788888877655443222111 123466677655332222 23446777766544322221
Q ss_pred cccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEE
Q 040165 180 YNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLN 253 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv 253 (358)
. ... ....++.+ +|.|||..... ...|..+|+....-..+ .-... .--.|+.. +|+||++
T Consensus 198 ~-------~~l-~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~~~~-~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 198 W-------QSL-EKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp C-------SSC-SCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECSSCS-CEEEEEEEGGGTEEEEE
T ss_pred c-------CCC-CCCcEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEECCCC-CeeeEEEeCCCCEEEEE
Confidence 1 011 11223333 68999987553 25899999886543332 21111 12245553 7888888
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC-eE
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER-TL 332 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~-~~ 332 (358)
. . .... |+..+-.+. ..- .+ +.. .+ ..|.++.+ .++.||+.....+.+..+|..++ ..
T Consensus 264 D-----~-~~~~--I~~~d~dG~-~~~-~~--~~~-~~------~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 264 D-----A-KHHV--IERANLDGS-HRK-AV--ISQ-GL------PHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp E-----T-TTTE--EEEECTTSC-SCE-EE--ECS-SC------SSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred E-----C-CCCE--EEEEeCCCC-eeE-EE--EEC-CC------CCceEEEE--ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 7 2 2344 455543222 111 11 111 11 34555422 24568888766667999996554 44
Q ss_pred EEe
Q 040165 333 EEI 335 (358)
Q Consensus 333 ~~v 335 (358)
+.+
T Consensus 323 ~~i 325 (386)
T 3v65_B 323 EII 325 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 159
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=64.39 E-value=69 Score=27.52 Aligned_cols=164 Identities=9% Similarity=0.063 Sum_probs=84.4
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcE
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPV 218 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~ 218 (358)
...+.+.|.. ++-+.+ .....+.+++..++.|..... ...+....-.++.+ +|.....+... ..
T Consensus 19 v~~l~~sp~g-~~las~--~~D~~i~iw~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~ 84 (345)
T 3fm0_A 19 CWFLAWNPAG-TLLASC--GGDRRIRIWGTEGDSWICKSV-----LSEGHQRTVRKVAWSPCGNYLASASFD------AT 84 (345)
T ss_dssp EEEEEECTTS-SCEEEE--ETTSCEEEEEEETTEEEEEEE-----ECSSCSSCEEEEEECTTSSEEEEEETT------SC
T ss_pred EEEEEECCCC-CEEEEE--cCCCeEEEEEcCCCcceeeee-----eccccCCcEEEEEECCCCCEEEEEECC------Cc
Confidence 3456666653 333322 345678899988888754322 11111011112222 45544333332 36
Q ss_pred EEEEECCCCeeEEe-cCCCCC-CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccC
Q 040165 219 IIAFDLAEEKFCRV-GEACHP-RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYH 295 (358)
Q Consensus 219 i~~fD~~~~~~~~i-~~P~~~-~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~ 295 (358)
+..+|..++.+..+ .+..+. ....+.-. +|++.+.+. ....+.+|.++.. ..+..+..+....
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s------~D~~v~iwd~~~~---~~~~~~~~~~~h~----- 150 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS------RDKSVWVWEVDEE---DEYECVSVLNSHT----- 150 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEEECTT---SCEEEEEEECCCC-----
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE------CCCeEEEEECCCC---CCeEEEEEecCcC-----
Confidence 77888887766544 333222 22333333 676655552 3468999999762 3454444443221
Q ss_pred ceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 296 GSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 296 ~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.....+++ ..+|++++.....+.+..||.+++++..+
T Consensus 151 ~~v~~~~~---~p~~~~l~s~s~d~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 151 QDVKHVVW---HPSQELLASASYDDTVKLYREEEDDWVCC 187 (345)
T ss_dssp SCEEEEEE---CSSSSCEEEEETTSCEEEEEEETTEEEEE
T ss_pred CCeEEEEE---CCCCCEEEEEeCCCcEEEEEecCCCEEEE
Confidence 12444555 55666555443333588889888876543
No 160
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=64.33 E-value=63 Score=27.03 Aligned_cols=171 Identities=7% Similarity=-0.006 Sum_probs=95.8
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceE-EECceEEEEeecCCCCCCCcEE
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGC-LFNGALHWLVSGFHFGSQDPVI 219 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~~~i 219 (358)
..++.+|+.++..-+|. .....+..++.....++.++. . ......++ +..+-.||+..++. ..+
T Consensus 29 lSGla~~~~~~~L~aV~--d~~~~I~~ld~~g~v~~~i~l------~--g~~D~EGIa~~~~g~~~vs~E~~-----~~l 93 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTI--NKPAAIVEMTTNGDLIRTIPL------D--FVKDLETIEYIGDNQFVISDERD-----YAI 93 (255)
T ss_dssp EEEEEEETTTTEEEEEE--ETTEEEEEEETTCCEEEEEEC------S--SCSSEEEEEECSTTEEEEEETTT-----TEE
T ss_pred cceeEEeCCCCEEEEEE--CCCCeEEEEeCCCCEEEEEec------C--CCCChHHeEEeCCCEEEEEECCC-----CcE
Confidence 67889998876554444 456677778887667777642 1 11223444 34445688876652 478
Q ss_pred EEEECCCCe--e--EEecCCC----CC-CceEEEEE--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeec
Q 040165 220 IAFDLAEEK--F--CRVGEAC----HP-RSVSLGVV--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDN 288 (358)
Q Consensus 220 ~~fD~~~~~--~--~~i~~P~----~~-~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~ 288 (358)
..|++.+.. + ..+.+|. .+ ..-.|+.. +++|+++. .. ....||.++.- ...... ..+..
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-----E~--~p~~i~~~~g~--~~~~~l-~i~~~ 163 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-----EK--NPIEVYKVNGL--LSSNEL-HISKD 163 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-----ES--SSEEEEEEEST--TCSSCC-EEEEC
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-----Cc--CCceEEEEccc--ccCCce-eeecc
Confidence 888876543 2 3344442 11 22345553 55888877 22 24577777631 111111 11211
Q ss_pred CCccc--cCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 289 DIMVR--YHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 289 ~~~~~--~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
..+.. .......+++ +...|++++.....+.|+.+|++.+..... .+.
T Consensus 164 ~~~~~~~~~~d~S~l~~--dp~tg~lliLS~~s~~L~~~d~~g~~~~~~-~L~ 213 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEF--NQQKNTLLVLSHESRALQEVTLVGEVIGEM-SLT 213 (255)
T ss_dssp HHHHHTCCSSCCCEEEE--ETTTTEEEEEETTTTEEEEECTTCCEEEEE-ECS
T ss_pred hhhccccccCCceeEEE--cCCCCeEEEEECCCCeEEEEcCCCCEEEEE-EcC
Confidence 11111 1112344444 688888888887777899999998755544 554
No 161
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=63.90 E-value=71 Score=27.49 Aligned_cols=203 Identities=8% Similarity=-0.076 Sum_probs=85.9
Q ss_pred EeecceEEEEEeCCceEEEEcccccc-eeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEe
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRA-HKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRD 177 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~-~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~ 177 (358)
-+.+|-.++....+..+.|||..+++ +........ .......+.+.+..+ +-+.+ .....+.+|+.+++. |..
T Consensus 63 ~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~--~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 63 WAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR--LNRAATFVRWSPNED-KFAVG--SGARVISVCYFEQENDWWV 137 (377)
T ss_dssp ECTTTCCEEEEETTSSEEEC------CCCCEEECCC--CSSCEEEEECCTTSS-CCEEE--ESSSCEEECCC-----CCC
T ss_pred EeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc--cCCceEEEEECCCCC-EEEEE--ecCCeEEEEEECCccccee
Confidence 34445444443466788999998877 222211111 111244566666433 32222 234568888877654 533
Q ss_pred cccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE----------------e-cCCCCC
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR----------------V-GEACHP 238 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~----------------i-~~P~~~ 238 (358)
... +.......-.++.+ +|.+...+... ..|..+|+.+..... + .+....
T Consensus 138 ~~~-----~~~~h~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (377)
T 3dwl_C 138 SKH-----LKRPLRSTILSLDWHPNNVLLAAGCAD------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG 206 (377)
T ss_dssp CEE-----ECSSCCSCEEEEEECTTSSEEEEEESS------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS
T ss_pred eeE-----eecccCCCeEEEEEcCCCCEEEEEeCC------CEEEEEEEEecccCCCccccccccccchhhhhhcccCCc
Confidence 322 11101011112222 45444444332 367888876433211 1 111011
Q ss_pred CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc
Q 040165 239 RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN 317 (358)
Q Consensus 239 ~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 317 (358)
....+.-. +|++.+.+. ....+.+|.++... .....+..+.. +......+++ ..+|++++...
T Consensus 207 ~v~~~~~sp~~~~l~~~~------~d~~i~iwd~~~~~--~~~~~~~~~~~-----~~~~v~~~~~---s~~~~~l~~~~ 270 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAG------HDSSVTIAYPSAPE--QPPRALITVKL-----SQLPLRSLLW---ANESAIVAAGY 270 (377)
T ss_dssp SEEEEEECTTSSCEEEEE------TTTEEC-CEECSTT--SCEEECCCEEC-----SSSCEEEEEE---EETTEEEEEES
T ss_pred eEEEEEECCCCCEEEEEe------CCCcEEEEECCCCC--CcceeeEeecC-----CCCceEEEEE---cCCCCEEEEEc
Confidence 12233333 666555552 34689999998632 22222222222 1222444555 55677666666
Q ss_pred CcceEEEEECCCCeEEEe
Q 040165 318 KWREFISCNLNERTLEEI 335 (358)
Q Consensus 318 ~~~~l~~yd~~t~~~~~v 335 (358)
+.. ++.|+.....|+..
T Consensus 271 ~~~-~~~~~~~~~~~~~~ 287 (377)
T 3dwl_C 271 NYS-PILLQGNESGWAHT 287 (377)
T ss_dssp SSS-EEEECCCC---CCS
T ss_pred CCc-EEEEEeCCCceEEE
Confidence 554 77888886665444
No 162
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=63.45 E-value=75 Score=27.65 Aligned_cols=203 Identities=7% Similarity=0.034 Sum_probs=96.2
Q ss_pred EeecceEEEEEeCCceEEEEcccc----c-ceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPST----R-AHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS 174 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T----~-~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~ 174 (358)
-+.+|-+++.......+.|||..+ . ....+..-.. ....+.+.+..+.+-+.+ .....+.+|+..++.
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-----SVKTVKFNAKQDNVLASG--GNNGEIFIWDMNKCT 147 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-----CCCEEEECSSSTTBEEEE--CSSSCEEBCBTTTTS
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc-----ceEEEEEcCCCCCEEEEE--cCCCeEEEEECCCCc
Confidence 344554444434667888998877 1 2223322111 133455666544444433 345678888887764
Q ss_pred ------eE-ecccccccccccccCCCCceEEEC---ceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCC-----CC
Q 040165 175 ------WR-DVHYNLGVKLFYGTESPPKGCLFN---GALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEAC-----HP 238 (358)
Q Consensus 175 ------W~-~~~~~~~~~~~~~~~~~~~~v~~~---G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~-----~~ 238 (358)
-. .... . ......-.++.++ +.+...+... ..|..+|+.+.+... +..+. ..
T Consensus 148 ~~~~~~~~~~~~~-----~-~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (416)
T 2pm9_A 148 ESPSNYTPLTPGQ-----S-MSSVDEVISLAWNQSLAHVFASAGSS------NFASIWDLKAKKEVIHLSYTSPNSGIKQ 215 (416)
T ss_dssp SCTTTCCCBCCCC-----S-CCSSCCCCEEEECSSCTTEEEEESSS------SCEEEEETTTTEEEEEECCCCCSSCCCC
T ss_pred ccccccccccccc-----c-cCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEEECCCCCcceEEeccccccccCC
Confidence 11 1100 0 0011112233332 3444444332 479999999876533 34431 11
Q ss_pred CceEEEEE-CC-eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEE
Q 040165 239 RSVSLGVV-GG-CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMI 316 (358)
Q Consensus 239 ~~~~l~~~-~g-~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 316 (358)
....+.-. +| .+.+.+... .....+.+|.++.... . +..+.. .+......+++ ...++++++..
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d---~~~~~i~~~d~~~~~~-~----~~~~~~----~~~~~v~~~~~--s~~~~~~l~s~ 281 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGS---DNDPSILIWDLRNANT-P----LQTLNQ----GHQKGILSLDW--CHQDEHLLLSS 281 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECC---SSSCCCCEEETTSTTS-C----SBCCCS----CCSSCEEEEEE--CSSCSSCEEEE
T ss_pred ceEEEEECCCCCCEEEEEECC---CCCceEEEEeCCCCCC-C----cEEeec----CccCceeEEEe--CCCCCCeEEEE
Confidence 22333333 44 454444211 0123899999875211 0 011110 12222344444 13266655555
Q ss_pred cCcceEEEEECCCCeEEEe
Q 040165 317 NKWREFISCNLNERTLEEI 335 (358)
Q Consensus 317 ~~~~~l~~yd~~t~~~~~v 335 (358)
...+.+..||+++++....
T Consensus 282 ~~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 282 GRDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp ESSSEEEEECSSSCCEEEE
T ss_pred eCCCCEEEeeCCCCcccee
Confidence 4434599999998765443
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=63.16 E-value=73 Score=27.36 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=61.6
Q ss_pred Cce-EEEEeecCCCCCCCcEEEEEECCCCe-------eE------EecCCCCCCceEEEEE-CCeeEEEeecccccCCCC
Q 040165 200 NGA-LHWLVSGFHFGSQDPVIIAFDLAEEK-------FC------RVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTT 264 (358)
Q Consensus 200 ~G~-lywl~~~~~~~~~~~~i~~fD~~~~~-------~~------~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~ 264 (358)
+|. +|...... ..+..||+..+. +. .+..+.......++.. +|+..++. .....
T Consensus 165 dg~~l~~~~~~~------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-----~~~~~ 233 (361)
T 3scy_A 165 DGKYLLADDLGT------DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLI-----NEIGG 233 (361)
T ss_dssp TSSEEEEEETTT------TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEE-----ETTTC
T ss_pred CCCEEEEEeCCC------CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEE-----cCCCC
Confidence 676 55544322 477777766443 32 2233322222234443 77644444 12356
Q ss_pred cEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcC-cceEEEEEC--CCCeEEEe
Q 040165 265 DFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINK-WREFISCNL--NERTLEEI 335 (358)
Q Consensus 265 ~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~-~~~l~~yd~--~t~~~~~v 335 (358)
.+.+|.+++ +.......+....- .......+++ ..+|+ |++.... .+.+..|++ ++++++.+
T Consensus 234 ~v~v~~~~~----g~~~~~~~~~~~~~--~~~~~~~i~~---spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 234 TVIAFRYAD----GMLDEIQTVAADTV--NAQGSGDIHL---SPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp EEEEEEEET----TEEEEEEEEESCSS--CCCCEEEEEE---CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred eEEEEEecC----CceEEeEEEecCCC--CCCCcccEEE---CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 799999984 45666666554321 1111334555 66777 6565554 345777777 46776665
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=62.80 E-value=69 Score=27.00 Aligned_cols=113 Identities=5% Similarity=-0.077 Sum_probs=57.4
Q ss_pred ECceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCC
Q 040165 199 FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGV 276 (358)
Q Consensus 199 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~ 276 (358)
.+|.+|...... ..|..+|+.+.+.. .++.+.......++.. +|+..++.. .....+.+|.++.
T Consensus 9 ~~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~-----~~~~~i~~~d~~t--- 74 (349)
T 1jmx_B 9 AGHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN-----NHYGDIYGIDLDT--- 74 (349)
T ss_dssp TTCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE-----TTTTEEEEEETTT---
T ss_pred CCCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe-----CCCCcEEEEeCCC---
Confidence 356666665543 58999999987764 3455531112233433 666444431 2345677776653
Q ss_pred CCceeEEEEeecCCccc-cCceeeEEEEeeecCCCc-EEEEEcC-----------cceEEEEECCCCe
Q 040165 277 HSSWERLTKIDNDIMVR-YHGSLVTLCTATGTDGGD-EIIMINK-----------WREFISCNLNERT 331 (358)
Q Consensus 277 ~~~W~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~g~-i~~~~~~-----------~~~l~~yd~~t~~ 331 (358)
.+ .+..+....... .......+++ ..+|+ +++...+ ...+..||+++++
T Consensus 75 -~~--~~~~~~~~~~~~~~~~~~~~~~~---spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 75 -CK--NTFHANLSSVPGEVGRSMYSFAI---SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp -TE--EEEEEESCCSTTEEEECSSCEEE---CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred -Cc--EEEEEEcccccccccccccceEE---CCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 22 233343321100 0001233455 55676 5554422 1359999998744
No 165
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=62.72 E-value=73 Score=27.24 Aligned_cols=108 Identities=8% Similarity=0.002 Sum_probs=58.9
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEE-ECCeeEEEeecccccCCCCcEEEEEEccCCCCC
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGV-VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHS 278 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~-~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~ 278 (358)
+|.+||....+ ..|..+|+.+++...+..|. ....++. -+|++++.. . .. |+.++... +
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~~~--~v~~i~~~~dg~l~v~~-----~---~g--l~~~d~~~--g 119 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHALPF--MGSALAKISDSKQLIAS-----D---DG--LFLRDTAT--G 119 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEECSS--CEEEEEEEETTEEEEEE-----T---TE--EEEEETTT--C
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEECCC--cceEEEEeCCCeEEEEE-----C---CC--EEEEECCC--C
Confidence 37899997664 48999999998877666552 1223333 488887765 1 12 44554311 3
Q ss_pred ceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC------cceEEEEECCCCeEEEe
Q 040165 279 SWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK------WREFISCNLNERTLEEI 335 (358)
Q Consensus 279 ~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------~~~l~~yd~~t~~~~~v 335 (358)
+.......... . ......-+++ ..+|++++.... ...++.|| +++.+.+
T Consensus 120 ~~~~~~~~~~~-~--~~~~~~~i~~---d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 120 VLTLHAELESD-L--PGNRSNDGRM---HPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp CEEEEECSSTT-C--TTEEEEEEEE---CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred cEEEEeeCCCC-C--CCCCCCCEEE---CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 44433222110 0 0111333444 556777775532 12488888 5666554
No 166
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=62.72 E-value=61 Score=26.32 Aligned_cols=188 Identities=15% Similarity=0.062 Sum_probs=96.4
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCC-CceEeccccccccccccc
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKA-FSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t-~~W~~~~~~~~~~~~~~~ 190 (358)
....++++|+.+++...+...... ...+.++|..+ +-++. ....+.+++..+ +....+.. .....
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~-~l~~~---~~~~i~~~d~~~~~~~~~~~~-----~~~~~ 85 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGK-YLLLN---SEGLLYRLSLAGDPSPEKVDT-----GFATI 85 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSS-EEEEE---ETTEEEEEESSSCCSCEECCC-----TTCCC
T ss_pred cceeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCC-EEEEE---cCCeEEEEeCCCCCCceEecc-----ccccc
Confidence 356788999999887766443211 34456666543 33332 245889999988 77665543 11000
Q ss_pred CCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEE
Q 040165 191 ESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELW 269 (358)
Q Consensus 191 ~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW 269 (358)
....-...-+|........... ....|..+|..+.+...+.... ....+.-. +|+..++.. .....+.+|
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~-----~~~~~~~l~ 156 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNL--PSYWHGWSPDGKSFTYCG-----IRDQVFDIY 156 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSS--SEEEEEECTTSSEEEEEE-----EETTEEEEE
T ss_pred cccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCC--CccceEECCCCCEEEEEE-----CCCCceEEE
Confidence 0111122235654444332110 1358888898877655543321 12222333 666544332 123568999
Q ss_pred EEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEc--CcceEEEEECCCCeEEEe
Q 040165 270 VMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMIN--KWREFISCNLNERTLEEI 335 (358)
Q Consensus 270 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~--~~~~l~~yd~~t~~~~~v 335 (358)
.++..+ ... ..+... ......+.+ ..+|+ |++... +...++.+++.++..+.+
T Consensus 157 ~~~~~~--~~~---~~~~~~-----~~~~~~~~~---s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 157 SMDIDS--GVE---TRLTHG-----EGRNDGPDY---SPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EEETTT--CCE---EECCCS-----SSCEEEEEE---CTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred EEECCC--Ccc---eEcccC-----CCccccceE---CCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 987532 222 112111 111344445 55666 555442 222588888888777776
No 167
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=62.09 E-value=84 Score=27.76 Aligned_cols=113 Identities=8% Similarity=0.042 Sum_probs=59.8
Q ss_pred ceEEEEeecCCCCCCCcEEEEEECCCCeeE-EecCC-CCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCC
Q 040165 201 GALHWLVSGFHFGSQDPVIIAFDLAEEKFC-RVGEA-CHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVH 277 (358)
Q Consensus 201 G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P-~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~ 277 (358)
|.+...+... ..|..+|+.+.+-. .+..+ .......+... +|++.+.+. ....+.+|.++.
T Consensus 182 ~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~dg~i~iwd~~~---- 245 (437)
T 3gre_A 182 KSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT------TRGIIDIWDIRF---- 245 (437)
T ss_dssp CEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE------TTSCEEEEETTT----
T ss_pred CCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc------CCCeEEEEEcCC----
Confidence 5555544443 58999999876553 33444 22222333333 666666552 346799998874
Q ss_pred CceeEEEEeecCCccccCceeeEEEEeee-cCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 278 SSWERLTKIDNDIMVRYHGSLVTLCTATG-TDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 278 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
. ..+..+..... .....+++... ..++.+++.....+.+..||+++++....
T Consensus 246 ~--~~~~~~~~~~~----~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 246 N--VLIRSWSFGDH----APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp T--EEEEEEBCTTC----EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred c--cEEEEEecCCC----CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 2 23333332111 11222322100 23455666555544699999998876554
No 168
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=60.95 E-value=68 Score=26.30 Aligned_cols=161 Identities=9% Similarity=0.003 Sum_probs=83.0
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCc
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDP 217 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~ 217 (358)
..++.+|+..+...+.- .....+.+|+..++.-+.+.. ... ....++.+ +|.+||..... .
T Consensus 38 ~~gi~~d~~~~~ly~~d--~~~~~I~~~~~~g~~~~~~~~-------~~~-~~p~~ia~d~~~~~lyv~d~~~------~ 101 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTD--ISEPSIGRASLHGGEPTTIIR-------QDL-GSPEGIALDHLGRTIFWTDSQL------D 101 (267)
T ss_dssp EEEEEEETTTTEEEEEE--TTTTEEEEEESSSCCCEEEEC-------TTC-CCEEEEEEETTTTEEEEEETTT------T
T ss_pred EEEEEEecCCCEEEEEE--CCCCEEEEEecCCCCcEEEEE-------CCC-CCccEEEEEecCCeEEEEECCC------C
Confidence 45677787655433322 345578888876653222211 111 11233433 57899987653 5
Q ss_pred EEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 218 VIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 218 ~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
.|..+|+....-..+ ..... .-..++.. +|+|++.... .....+.+..++. . -.++ +....+
T Consensus 102 ~I~~~~~~g~~~~~~~~~~~~-~P~~i~vd~~~g~lyv~~~~----~~~~~I~~~~~dg--~---~~~~--~~~~~~--- 166 (267)
T 1npe_A 102 RIEVAKMDGTQRRVLFDTGLV-NPRGIVTDPVRGNLYWTDWN----RDNPKIETSHMDG--T---NRRI--LAQDNL--- 166 (267)
T ss_dssp EEEEEETTSCSCEEEECSSCS-SEEEEEEETTTTEEEEEECC----SSSCEEEEEETTS--C---CCEE--EECTTC---
T ss_pred EEEEEEcCCCCEEEEEECCCC-CccEEEEeeCCCEEEEEECC----CCCcEEEEEecCC--C---CcEE--EEECCC---
Confidence 899999876543333 22111 12344443 6888887621 0123444444432 1 1111 111111
Q ss_pred CceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 295 HGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..|.++..+..++.||+.....+.+..+|+++...+.+
T Consensus 167 ---~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 204 (267)
T 1npe_A 167 ---GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (267)
T ss_dssp ---SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred ---CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 23444433444556888877666799999987655544
No 169
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=60.89 E-value=74 Score=26.68 Aligned_cols=199 Identities=7% Similarity=-0.037 Sum_probs=97.0
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
-+.+|-.++....+..+.|||..+++...--..+. .....+.+.|.. .+-+ .. .....+.+++.+++. ....
T Consensus 63 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~-~~l~-sg-s~D~~v~lWd~~~~~-~~~~ 134 (304)
T 2ynn_A 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTK-PYVL-SG-SDDLTVKLWNWENNW-ALEQ 134 (304)
T ss_dssp EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECSSS-SEEE-EE-ETTSCEEEEEGGGTT-EEEE
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCC----CcEEEEEEcCCC-CEEE-EE-CCCCeEEEEECCCCc-chhh
Confidence 33455444443567889999998887643211111 114455666653 3322 22 345678888876541 1111
Q ss_pred cccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEE--E-CCeeEE
Q 040165 180 YNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGV--V-GGCLSL 252 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~--~-~g~L~l 252 (358)
. +. .....-.++.+ +|.+...+... ..|-.+|+.+.+-... ..........+.. . ++.+.+
T Consensus 135 ~-----~~-~h~~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 135 T-----FE-GHEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp E-----EC-CCCSCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred h-----hc-ccCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 1 10 00001122333 23333333332 4788889876432211 1111111111111 1 444444
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
.+ .....+.+|.++. . ..+..+.-. ......+++ ..++.+++.....+.+..+|.++.+.
T Consensus 203 s~------s~D~~i~iWd~~~----~--~~~~~~~~h-----~~~v~~~~~---~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 203 TA------SDDLTIKIWDYQT----K--SCVATLEGH-----MSNVSFAVF---HPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp EE------ETTSEEEEEETTT----T--EEEEEEECC-----SSCEEEEEE---CSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred EE------cCCCeEEEEeCCC----C--ccceeeCCC-----CCCEEEEEE---CCCCCEEEEEcCCCeEEEEECCCCce
Confidence 44 2346899998764 1 233444322 222444555 55677666555444699999999887
Q ss_pred EEeecc
Q 040165 333 EEIYRP 338 (358)
Q Consensus 333 ~~v~~~ 338 (358)
.+....
T Consensus 263 ~~~~~~ 268 (304)
T 2ynn_A 263 EKTLNV 268 (304)
T ss_dssp EEEECC
T ss_pred eeeccC
Confidence 655343
No 170
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=60.72 E-value=77 Score=26.88 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=62.5
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC--C-C----------------CCceEEEEE--CCeeEEEeeccc
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA--C-H----------------PRSVSLGVV--GGCLSLNVCCSN 258 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P--~-~----------------~~~~~l~~~--~g~L~lv~~~~~ 258 (358)
+|.++|..... ..|..||..+.++..+..+ . . ..-..++.. +|+|++..
T Consensus 29 ~g~~l~v~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d---- 98 (322)
T 2fp8_A 29 TNKGFYTSVQD------GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD---- 98 (322)
T ss_dssp TCSSEEEECTT------SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE----
T ss_pred CCCEEEEEcCC------CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE----
Confidence 67878876553 5899999998877665322 1 0 112345554 68888886
Q ss_pred ccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecC-CCcEEEEEcC-----------------cc
Q 040165 259 CVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTD-GGDEIIMINK-----------------WR 320 (358)
Q Consensus 259 ~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~-----------------~~ 320 (358)
.. .. ++.++..+ +............ ......-+++ .. +|+|++.... ..
T Consensus 99 -~~--~~--i~~~d~~~--g~~~~~~~~~~~~---~~~~p~~i~~---d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 99 -CY--YH--LSVVGSEG--GHATQLATSVDGV---PFKWLYAVTV---DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp -TT--TE--EEEECTTC--EECEEEESEETTE---ECSCEEEEEE---CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred -CC--CC--EEEEeCCC--CEEEEecccCCCC---cccccceEEE---ecCCCEEEEECCcccccccccceehcccCCCc
Confidence 21 22 45554321 2222222111100 0111233445 55 7889987643 13
Q ss_pred eEEEEECCCCeEEEe
Q 040165 321 EFISCNLNERTLEEI 335 (358)
Q Consensus 321 ~l~~yd~~t~~~~~v 335 (358)
.++.||+++++.+.+
T Consensus 166 ~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 166 RLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCEEEEe
Confidence 599999998887654
No 171
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=60.65 E-value=93 Score=27.75 Aligned_cols=196 Identities=11% Similarity=0.010 Sum_probs=95.0
Q ss_pred eecceEEEEEeCCceEEEEcccccc----eeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceE
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRA----HKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWR 176 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~----~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~ 176 (358)
..+|.|.+.......+..+++..+. ...+..... ....++.+|...+...+.- .....+++++.....-+
T Consensus 121 ~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~----~~p~glavD~~~~~lY~~d--~~~~~I~~~~~~g~~~~ 194 (400)
T 3p5b_L 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----QAPDGLAVDWIHSNIYWTD--SVLGTVSVADTKGVKRK 194 (400)
T ss_dssp TTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC----SCEEEEEEETTTTEEEEEE--TTTTEEEEECTTTCSEE
T ss_pred eccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC----CCcccEEEEecCCceEEEE--CCCCeEEEEeCCCCceE
Confidence 3456666553344556666665421 111111110 1146778887665432222 34457778877765544
Q ss_pred ecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCee
Q 040165 177 DVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCL 250 (358)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L 250 (358)
.+.. ... ....++.+ +|.|||..... ...|..+|+....-..+ .--.. .-..|+.. +++|
T Consensus 195 ~l~~-------~~~-~~P~~iavdp~~g~ly~td~~~-----~~~I~~~~~dG~~~~~~~~~~l~-~P~glavd~~~~~l 260 (400)
T 3p5b_L 195 TLFR-------ENG-SKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLLSGRL 260 (400)
T ss_dssp EEEE-------CSS-CCEEEEEEETTTTEEEEEECSS-----SCCEEEEETTSCSCEEEECSSCS-CEEEEEEETTTTEE
T ss_pred EEEe-------CCC-CCcceEEEecccCeEEEEeCCC-----CCEEEEEeCCCCccEEEEECCCC-ceEEEEEEeCCCEE
Confidence 3321 011 11223333 68999987542 14789999876433332 21111 12245554 7888
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
|++. . .... |+..+-.+. ...+.. .- ...+ ..|.++. ..++.||+.....+.+..+|..++
T Consensus 261 Y~aD-----~-~~~~--I~~~d~dG~-~~~~~~-~~-~~~l------~~P~gl~--v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 261 YWVD-----S-KLHS--ISSIDVNGG-NRKTIL-ED-EKRL------AHPFSLA--VFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEE-----T-TTTE--EEEEETTSC-CCEEEE-EC-SSTT------SSEEEEE--EETTEEEEEESSSCSEEEEESSSC
T ss_pred EEEE-----C-CCCE--EEEEeCCCC-ccEEEE-eC-CCCC------CCCEEEE--EeCCEEEEecCCCCeEEEEEcCCC
Confidence 8886 2 2334 455543222 222221 11 1111 3455542 124558887766557999997666
Q ss_pred e-EEEe
Q 040165 331 T-LEEI 335 (358)
Q Consensus 331 ~-~~~v 335 (358)
+ .+.+
T Consensus 322 ~~~~~i 327 (400)
T 3p5b_L 322 SDVNLL 327 (400)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 4 3444
No 172
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=60.20 E-value=2.3 Score=38.01 Aligned_cols=30 Identities=13% Similarity=-0.106 Sum_probs=18.8
Q ss_pred ceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEE
Q 040165 195 KGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCR 231 (358)
Q Consensus 195 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~ 231 (358)
.++..+|.+|.-+.++ .+.++|..++ .|+.
T Consensus 4 sP~v~~~~v~~gs~dg-------~v~a~d~~tG~~~W~~ 35 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDG-------SLHAVSKRTGSIKWTL 35 (369)
T ss_dssp ----CTTEEEEEETTS-------EEEEEETTTCCEEEEE
T ss_pred CCeeeCCEEEEEcCCC-------EEEEEECCCCCEEEEe
Confidence 4456778888766553 8999998765 5554
No 173
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=58.12 E-value=84 Score=26.45 Aligned_cols=69 Identities=4% Similarity=-0.114 Sum_probs=38.2
Q ss_pred ecceEEEEEeCCceEEEEcccccceec-cCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceE
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKK-LPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWR 176 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~ 176 (358)
.+|.+++.......+.++|+.|++... ++... .. . ...+.+++..+ +-.+.. .....+.+|+..+++-.
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~-~--~~~~~~s~dg~-~~~v~~-~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KF-G--PGTAMMAPDNR-TAYVLN-NHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CC-S--SCEEEECTTSS-EEEEEE-TTTTEEEEEETTTTEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-CC-C--CceeEECCCCC-EEEEEe-CCCCcEEEEeCCCCcEE
Confidence 345554443467788999999887643 32221 00 0 12345555543 332222 44567899998887643
No 174
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=57.32 E-value=99 Score=27.06 Aligned_cols=199 Identities=11% Similarity=0.046 Sum_probs=98.7
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-.++....+..+.|||..+++....-..+. .....+.+.+..+ + ++.. .....+.+++.+++.-...-.
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~~~-~-l~s~-s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGD-K-LVSG-SGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSS-E-EEEE-ETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC----CCEEEEEEcCCCC-E-EEEe-cCCCcEEEEECCCCeeEEEEE
Confidence 4456555543467789999998887654322211 1144566666543 3 2322 355778999988876432211
Q ss_pred ccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCC-----CCC-CceEEEEE-CCe
Q 040165 181 NLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEA-----CHP-RSVSLGVV-GGC 249 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P-----~~~-~~~~l~~~-~g~ 249 (358)
.. ..-..+.+ +|.+...+... ..|-.+|+.+++... +..+ .+. ....+.-. +|+
T Consensus 205 -----~~----~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 205 -----IE----DGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp -----CS----SCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred -----cC----CCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 00 01111222 45554444443 478889998775432 3322 111 22233333 666
Q ss_pred eEEEeecccccCCCCcEEEEEEccCCCCCc------eeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEE
Q 040165 250 LSLNVCCSNCVDKTTDFELWVMKQYGVHSS------WERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFI 323 (358)
Q Consensus 250 L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~------W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~ 323 (358)
+.+.+. ....+.+|.++....... ...... +.++......+++ ..+|..++.....+.+.
T Consensus 270 ~l~s~s------~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~---~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 270 SVVSGS------LDRSVKLWNLQNANNKSDSKTPNSGTCEVT-----YIGHKDFVLSVAT---TQNDEYILSGSKDRGVL 335 (393)
T ss_dssp EEEEEE------TTSEEEEEEC---------------CEEEE-----EECCSSCEEEEEE---CGGGCEEEEEETTSEEE
T ss_pred EEEEEe------CCCEEEEEECCCCCCcccccCCCCCcceEE-----EecccCcEEEEEE---CCCCCEEEEEeCCCeEE
Confidence 655552 346899999875211000 001111 1112222344455 55566555544444599
Q ss_pred EEECCCCeEEEe
Q 040165 324 SCNLNERTLEEI 335 (358)
Q Consensus 324 ~yd~~t~~~~~v 335 (358)
.+|+++++....
T Consensus 336 iwd~~~~~~~~~ 347 (393)
T 1erj_A 336 FWDKKSGNPLLM 347 (393)
T ss_dssp EEETTTCCEEEE
T ss_pred EEECCCCeEEEE
Confidence 999998765443
No 175
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=57.25 E-value=94 Score=29.48 Aligned_cols=122 Identities=7% Similarity=0.028 Sum_probs=64.5
Q ss_pred CceEEECceEEEEeecCCCCCCCcEEEEEECCC--CeeEEe-cCCC------CCCceEEEEECCeeEEEeecccccCCCC
Q 040165 194 PKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAE--EKFCRV-GEAC------HPRSVSLGVVGGCLSLNVCCSNCVDKTT 264 (358)
Q Consensus 194 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~i-~~P~------~~~~~~l~~~~g~L~lv~~~~~~~~~~~ 264 (358)
..++..+|.+|..+... .+.++|..+ +.|+.- ..|. +.....++..+|+|++.+ . ..
T Consensus 62 ~~P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-----~--dg 127 (582)
T 1flg_A 62 SQAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-----L--DA 127 (582)
T ss_dssp CCCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-----T--TT
T ss_pred eccEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe-----C--CC
Confidence 55688999999987643 599999875 467653 2221 111233456788888776 2 22
Q ss_pred cEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcC------cceEEEEECCCCeEEEe
Q 040165 265 DFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINK------WREFISCNLNERTLEEI 335 (358)
Q Consensus 265 ~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~------~~~l~~yd~~t~~~~~v 335 (358)
. +..++-...+..|.....-.. ........|+.+ -+..+|+ +++.... ...++.||.+|++..+.
T Consensus 128 ~--l~AlD~~TG~~~W~~~~~~~~---~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 128 S--VVALNKNTGKVVWKKKFADHG---AGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp E--EEEEESSSCCEEEEEECSCGG---GTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred E--EEEEECCCCCEEeeecCCCCC---cCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 3 444543223357765321100 000111344443 0112333 3333321 23599999999876654
No 176
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=56.52 E-value=92 Score=26.43 Aligned_cols=186 Identities=4% Similarity=-0.087 Sum_probs=88.9
Q ss_pred eCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe-cccccccccccc
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD-VHYNLGVKLFYG 189 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~ 189 (358)
..+..+.|||..+++....-.+... . .....+.+.+.. .+ ++.. .....+.+++..+++-.. +.. -+..
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~gh-~-~~v~~~~~~~~~-~~-l~s~-s~D~~i~lWd~~~~~~~~~~~~-----~~~~ 124 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLEGH-Q-LGVVSVDISHTL-PI-AASS-SLDAHIRLWDLENGKQIKSIDA-----GPVD 124 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCC-S-SCEEEEEECSSS-SE-EEEE-ETTSEEEEEETTTTEEEEEEEC-----CTTC
T ss_pred cCCCCEEEEECCCCCeeeeeeeccC-C-CCEEEEEECCCC-CE-EEEE-eCCCcEEEEECCCCCEEEEEeC-----CCcc
Confidence 3555666777655543221111111 1 113334444432 22 2222 345678889988775322 111 0000
Q ss_pred cCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEE
Q 040165 190 TESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFE 267 (358)
Q Consensus 190 ~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~ 267 (358)
. ..-...-+|.....+... ..+..+|+.+++-... .... .....+.-. +|++.+.+. ....+.
T Consensus 125 ~--~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~lasg~------~dg~i~ 189 (321)
T 3ow8_A 125 A--WTLAFSPDSQYLATGTHV------GKVNIFGVESGKKEYSLDTRG-KFILSIAYSPDGKYLASGA------IDGIIN 189 (321)
T ss_dssp C--CCEEECTTSSEEEEECTT------SEEEEEETTTCSEEEEEECSS-SCEEEEEECTTSSEEEEEE------TTSCEE
T ss_pred E--EEEEECCCCCEEEEEcCC------CcEEEEEcCCCceeEEecCCC-ceEEEEEECCCCCEEEEEc------CCCeEE
Confidence 0 011111234433333332 4788888887654322 2111 112233333 677666552 346799
Q ss_pred EEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 268 LWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 268 vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
+|.++. . ..+..+... ......+++ ..+|++++.....+.+..||+++.+....
T Consensus 190 iwd~~~----~--~~~~~~~~h-----~~~v~~l~~---spd~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (321)
T 3ow8_A 190 IFDIAT----G--KLLHTLEGH-----AMPIRSLTF---SPDSQLLVTASDDGYIKIYDVQHANLAGT 243 (321)
T ss_dssp EEETTT----T--EEEEEECCC-----SSCCCEEEE---CTTSCEEEEECTTSCEEEEETTTCCEEEE
T ss_pred EEECCC----C--cEEEEEccc-----CCceeEEEE---cCCCCEEEEEcCCCeEEEEECCCcceeEE
Confidence 998764 1 233344321 122455666 66777666655444699999988766543
No 177
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=56.38 E-value=1.1e+02 Score=27.11 Aligned_cols=88 Identities=8% Similarity=0.034 Sum_probs=50.7
Q ss_pred eEEecCC-C-CCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEee
Q 040165 229 FCRVGEA-C-HPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTAT 305 (358)
Q Consensus 229 ~~~i~~P-~-~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 305 (358)
++.++.| . ++.+..+... .+.+..++ . ...+.||..+. ++-.+...+.. +......+++
T Consensus 94 ~~~l~ap~~~~d~y~~~l~wS~~n~lAvg-----l--d~tV~lWd~~t----g~~~~~~~~~~-----~~~~V~sv~f-- 155 (420)
T 4gga_A 94 DRILDAPEIRNDYYLNLVDWSSGNVLAVA-----L--DNSVYLWSASS----GDILQLLQMEQ-----PGEYISSVAW-- 155 (420)
T ss_dssp SEEEECTTCCCCTTCBCEEECTTSEEEEE-----E--TTEEEEEETTT----CCEEEEEECCS-----TTCCEEEEEE--
T ss_pred ceEEECCCCcccccceeEEECCCCEEEEE-----e--CCEEEEEECCC----CCEEEEEEecC-----CCCcEEEEEE--
Confidence 4455677 2 4466666654 34443344 2 35899998765 33333333322 1122555666
Q ss_pred ecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 306 GTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 306 ~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..+|+.++.....+.+..+|+++++....
T Consensus 156 -spdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 156 -IKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp -CTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred -CCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 66787665554444599999999876554
No 178
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=55.58 E-value=90 Score=26.01 Aligned_cols=197 Identities=7% Similarity=0.041 Sum_probs=88.5
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCC-CCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSS-TDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~-~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
.+|-.++....+..+.|||..++....+-.... + ......+.+.+. .+.+-+.+ .....+.+++.+++.|..+..
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H-~~~V~~v~~s~~~~g~~l~s~--s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-H-EGPVWRVDWAHPKFGTILASC--SYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-C-SSCEEEEEECCGGGCSEEEEE--ETTTEEEEEEBSSSCBCCCEE
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-c-cCCeEEEEecCCCcCCEEEEE--cCCCEEEEEEcCCCceEEEEE
Confidence 344443332356667778765432221111111 1 111344555443 23333322 345788999999888765432
Q ss_pred ccccccccccCCCCceEEEC----ceEEEEeecCCCCCCCcEEEEEECCCCe-eEEecCCCCC-CceEEEE---------
Q 040165 181 NLGVKLFYGTESPPKGCLFN----GALHWLVSGFHFGSQDPVIIAFDLAEEK-FCRVGEACHP-RSVSLGV--------- 245 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~----G~lywl~~~~~~~~~~~~i~~fD~~~~~-~~~i~~P~~~-~~~~l~~--------- 245 (358)
+.... ..-.++.+. |.+...+... ..|-.+|+.++. +....+..+. ....+.-
T Consensus 95 -----~~~h~-~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 95 -----HAVHS-ASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp -----ECCCS-SCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred -----eecCC-CceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 11000 111122221 4443333332 467778877542 2111111010 0011111
Q ss_pred -----ECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCC---CcEEEEEc
Q 040165 246 -----VGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDG---GDEIIMIN 317 (358)
Q Consensus 246 -----~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---g~i~~~~~ 317 (358)
.++++.+.++ ....+.+|.++.. ...|.....+.-. ......+++ ..+ +..+....
T Consensus 163 ~~~~~~~~~~l~sgs------~D~~v~lwd~~~~--~~~~~~~~~l~~H-----~~~V~~v~~---sp~~~~~~~las~s 226 (297)
T 2pm7_B 163 EHNGTKESRKFVTGG------ADNLVKIWKYNSD--AQTYVLESTLEGH-----SDWVRDVAW---SPTVLLRSYMASVS 226 (297)
T ss_dssp -------CCEEEEEE------TTSCEEEEEEETT--TTEEEEEEEECCC-----SSCEEEEEE---CCCCSSSEEEEEEE
T ss_pred cCCCCCCcceEEEEc------CCCcEEEEEEcCC--CceEEEEEEecCC-----CCceEEEEE---CCCCCCceEEEEEE
Confidence 1234444441 3468999999762 2456666555422 222444555 333 34554443
Q ss_pred CcceEEEEECCCC
Q 040165 318 KWREFISCNLNER 330 (358)
Q Consensus 318 ~~~~l~~yd~~t~ 330 (358)
..+.+..+|+++.
T Consensus 227 ~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 227 QDRTCIIWTQDNE 239 (297)
T ss_dssp TTSCEEEEEESST
T ss_pred CCCcEEEEEeCCC
Confidence 3335888887763
No 179
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=55.45 E-value=70 Score=27.35 Aligned_cols=74 Identities=7% Similarity=0.014 Sum_probs=40.3
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCcee-EEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWE-RLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISC 325 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~y 325 (358)
+|.+.+.+. ....+.+|.+.......... ....+ .++......+++ ..++.+++.....+.+..+
T Consensus 38 d~~~l~sgs------~D~~v~iWd~~~~~~~~~~~~~~~~l-----~~h~~~V~~~~~---~~~~~~l~s~s~D~~v~lw 103 (343)
T 2xzm_R 38 DSPVLISGS------RDKTVMIWKLYEEEQNGYFGIPHKAL-----TGHNHFVSDLAL---SQENCFAISSSWDKTLRLW 103 (343)
T ss_dssp CCCEEEEEE------TTSCEEEEEECSSCCSSBSEEEEEEE-----CCCSSCEEEEEE---CSSTTEEEEEETTSEEEEE
T ss_pred CCCEEEEEc------CCCEEEEEECCcCCcccccccccchh-----ccCCCceEEEEE---CCCCCEEEEEcCCCcEEEE
Confidence 566555552 34689999997532111111 11222 122223455566 5567666655444469999
Q ss_pred ECCCCeEEE
Q 040165 326 NLNERTLEE 334 (358)
Q Consensus 326 d~~t~~~~~ 334 (358)
|+++++...
T Consensus 104 d~~~~~~~~ 112 (343)
T 2xzm_R 104 DLRTGTTYK 112 (343)
T ss_dssp ETTSSCEEE
T ss_pred ECCCCcEEE
Confidence 999876543
No 180
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=55.45 E-value=90 Score=26.00 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=94.6
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-.++.......+.|||..+++....-... ......+.+.+.. .+-+ .. .....+.+++.++++-...
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~~l~-s~-~~d~~i~iwd~~~~~~~~~-- 144 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH----SNYVFCCNFNPQS-NLIV-SG-SFDESVRIWDVKTGKCLKT-- 144 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECSSS-SEEE-EE-ETTSCEEEEETTTCCEEEE--
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC----CCCEEEEEEcCCC-CEEE-EE-eCCCcEEEEECCCCEEEEE--
Confidence 334544444346677889998877654321111 1113445566643 2322 22 3456788999887643211
Q ss_pred ccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEeec
Q 040165 181 NLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVCC 256 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~~ 256 (358)
++... ..-.++.+ +|.+...+... ..|..+|+.+.+... +..........+.-. +|+..+++.
T Consensus 145 -----~~~~~-~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 211 (312)
T 4ery_A 145 -----LPAHS-DPVSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT- 211 (312)
T ss_dssp -----ECCCS-SCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-
T ss_pred -----ecCCC-CcEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-
Confidence 11000 01112222 45544444432 478899998765433 221111112223322 566555552
Q ss_pred ccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 257 SNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
....+.+|.+.. .. ....+....- .......... ..++..++.....+.+..||+++++....
T Consensus 212 -----~d~~i~iwd~~~----~~--~~~~~~~~~~--~~~~~~~~~~---~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 274 (312)
T 4ery_A 212 -----LDNTLKLWDYSK----GK--CLKTYTGHKN--EKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274 (312)
T ss_dssp -----TTTEEEEEETTT----TE--EEEEECSSCC--SSSCCCEEEE---CSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred -----CCCeEEEEECCC----Cc--EEEEEEecCC--ceEEEEEEEE---eCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence 346899998765 11 2222221110 0001111222 34566665554444599999998876544
No 181
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=55.38 E-value=23 Score=25.90 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=29.8
Q ss_pred ceEEEEccccc-ceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE
Q 040165 114 KDFFIYNPSTR-AHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS 159 (358)
Q Consensus 114 ~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 159 (358)
-.++.+||.|+ .|.+.-... ..+.+.+|+..+.|+|+.+.
T Consensus 11 A~V~~~D~~tk~~W~p~g~~~------~~V~~~~d~~~~~yRIv~~~ 51 (120)
T 1ddw_A 11 AHVFQIDPNTKKNWVPTSKHA------VTVSYFYDSTRNVYRIISLD 51 (120)
T ss_dssp EEEEEECTTTSCSEEESCSSC------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCCceEeCCCCc------eEEEEEEcCCCCEEEEEEcc
Confidence 45788999996 997654332 25667889988999999864
No 182
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=55.14 E-value=1.1e+02 Score=29.22 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=63.2
Q ss_pred CceEEECceEEEEee-cCCCCCCCcEEEEEEC-CC--CeeEEe-cCCC--------CCCceEEEE--ECCe----eEEEe
Q 040165 194 PKGCLFNGALHWLVS-GFHFGSQDPVIIAFDL-AE--EKFCRV-GEAC--------HPRSVSLGV--VGGC----LSLNV 254 (358)
Q Consensus 194 ~~~v~~~G~lywl~~-~~~~~~~~~~i~~fD~-~~--~~~~~i-~~P~--------~~~~~~l~~--~~g~----L~lv~ 254 (358)
..++..+|.+|.... .+ .+.++|. .+ +.|+.- ..+. +.....++. .+|+ |++.+
T Consensus 56 ~tP~v~~g~vyv~~~~~~-------~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t 128 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSFPN-------NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ 128 (599)
T ss_dssp SCCEEETTEEEEECSTTT-------CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC
T ss_pred eccEEECCEEEEEeCCCC-------EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc
Confidence 556788999999876 43 7999999 65 467653 2211 111223444 5666 76665
Q ss_pred ecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc-----CcceEEEEECCC
Q 040165 255 CCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN-----KWREFISCNLNE 329 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-----~~~~l~~yd~~t 329 (358)
. .. .+..++....+..|.... .... ........|+.. +|.|++... ....++.||.+|
T Consensus 129 -----~--dg--~l~AlDa~TG~~~W~~~~--~~~~-~~~~~~ssP~v~-----~g~V~vg~~g~e~g~~g~v~A~D~~T 191 (599)
T 1w6s_A 129 -----L--DG--NVAALNAETGETVWKVEN--SDIK-VGSTLTIAPYVV-----KDKVIIGSSGAELGVRGYLTAYDVKT 191 (599)
T ss_dssp -----T--TS--EEEEEETTTCCEEEEEEC--CCGG-GTCBCCSCCEEE-----TTEEEECCBCGGGTCCCEEEEEETTT
T ss_pred -----C--CC--EEEEEECCCCCEEEeecC--CCCC-ccceeecCCEEE-----CCEEEEEecccccCCCCeEEEEECCC
Confidence 1 12 345555322335676532 1100 011111344444 455655432 122599999999
Q ss_pred CeEEEe
Q 040165 330 RTLEEI 335 (358)
Q Consensus 330 ~~~~~v 335 (358)
++..+-
T Consensus 192 G~~~W~ 197 (599)
T 1w6s_A 192 GEQVWR 197 (599)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 986654
No 183
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=55.00 E-value=99 Score=26.35 Aligned_cols=198 Identities=10% Similarity=0.002 Sum_probs=99.0
Q ss_pred EEEeecceEEEEEeCCceEEEEcccc----cceec-cCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCC
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPST----RAHKK-LPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKA 172 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T----~~~~~-lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t 172 (358)
..+..+|.|.........+..+++.+ +.... ++. ... ...++.+|+..+...+.- .....+++++...
T Consensus 36 ~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~----~p~glavd~~~~~ly~~d--~~~~~I~~~~~~g 108 (316)
T 1ijq_A 36 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQ----APDGLAVDWIHSNIYWTD--SVLGTVSVADTKG 108 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCS----CCCEEEEETTTTEEEEEE--TTTTEEEEEETTS
T ss_pred EEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCC----CcCEEEEeecCCeEEEEE--CCCCEEEEEeCCC
Confidence 34445677777634567788888876 22222 221 111 123567776655432221 3456778888765
Q ss_pred CceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--
Q 040165 173 FSWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-- 246 (358)
Q Consensus 173 ~~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-- 246 (358)
..=+.+.. ... ....++.+ +|.|||..... ...|..+|+....-..+ ..... .-..|+..
T Consensus 109 ~~~~~~~~-------~~~-~~P~~iavdp~~g~ly~~d~~~-----~~~I~~~~~dG~~~~~~~~~~~~-~P~gla~d~~ 174 (316)
T 1ijq_A 109 VKRKTLFR-------ENG-SKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVTENIQ-WPNGITLDLL 174 (316)
T ss_dssp SSEEEEEE-------CTT-CCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEECSSCS-CEEEEEEETT
T ss_pred CceEEEEE-------CCC-CCcceEEeCCCCCEEEEEccCC-----CCeEEEEcCCCCCeEEEEECCCC-CceEEEEecc
Confidence 43222211 001 11223333 68999987542 24899999876544333 22221 12245554
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCN 326 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd 326 (358)
+++||++. . ....+....++. . .. ..+.... ..+ ..|.++.+ . ++.||+.....+.+..+|
T Consensus 175 ~~~lY~~D-----~-~~~~I~~~d~dg--~-~~-~~~~~~~-~~~------~~P~giav-~-~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 175 SGRLYWVD-----S-KLHSISSIDVNG--G-NR-KTILEDE-KRL------AHPFSLAV-F-EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp TTEEEEEE-----T-TTTEEEEEETTS--C-SC-EEEEECT-TTT------SSEEEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEE-----C-CCCeEEEEecCC--C-ce-EEEeecC-Ccc------CCcEEEEE-E-CCEEEEEECCCCeEEEEe
Confidence 78888876 2 334555444432 1 11 1111111 111 34544422 2 466888876666799999
Q ss_pred CCCCeE-EEe
Q 040165 327 LNERTL-EEI 335 (358)
Q Consensus 327 ~~t~~~-~~v 335 (358)
..+++. +.+
T Consensus 236 ~~~g~~~~~i 245 (316)
T 1ijq_A 236 RLTGSDVNLL 245 (316)
T ss_dssp TTTCCCCEEE
T ss_pred CCCCcceEEE
Confidence 977653 444
No 184
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=54.71 E-value=92 Score=25.88 Aligned_cols=155 Identities=10% Similarity=-0.004 Sum_probs=72.1
Q ss_pred cceEEEEEeCCceEEEEcccccceec-------cCCCCCCCCCCceEEEeEeCCC-CCeEEEEEEccceEEEEEEcCCCc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKK-------LPDPDISLGSPYLYGFGYDSST-DDYKVLAVSCLRVLLKVFSMKAFS 174 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~-------lP~~~~~~~~~~~~~~~~d~~~-~~ykvv~~~~~~~~~~vyss~t~~ 174 (358)
+|-+++....+..+.|||..+++... +-.... .......+.+.+.. +.+-+.+ .....+.+|+..+++
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND--SKGSLYSVKFAPAHLGLKLACL--GNDGILRLYDALEPS 145 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC--CSSCEEEEEECCGGGCSEEEEE--ETTCEEEEEECSSTT
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc--cCCceeEEEEcCCCCCcEEEEe--cCCCcEEEecCCChH
Confidence 35554443467788899887764211 111100 01124456666653 3343333 345689999987653
Q ss_pred ----eEeccccccccc-ccccCCCCceEEE-----CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCC-CceE
Q 040165 175 ----WRDVHYNLGVKL-FYGTESPPKGCLF-----NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHP-RSVS 242 (358)
Q Consensus 175 ----W~~~~~~~~~~~-~~~~~~~~~~v~~-----~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~-~~~~ 242 (358)
|........... +......-.++.+ +|.....+... ..++.++..+++...+ .++.+. ....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 219 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE------QAIIYQRGKDGKLHVAAKLPGHKSLIRS 219 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT------EEEEEEECTTSCEEEEEECCCCCSCEEE
T ss_pred HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC------CcEEEEccCCCceeeeeecCCCCcceeE
Confidence 432111000000 0011011122222 25555555443 3566666666666444 344322 2233
Q ss_pred EEEE-CC----eeEEEeecccccCCCCcEEEEEEcc
Q 040165 243 LGVV-GG----CLSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 243 l~~~-~g----~L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
+... +| .+.+.+. ....+.+|.+..
T Consensus 220 ~~~~p~~~~~~~~l~s~~------~dg~i~iwd~~~ 249 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGC------KDGRIRIFKITE 249 (351)
T ss_dssp EEECCCSSCSSEEEEEEE------TTSCEEEEEEEE
T ss_pred EEECCCCCCcceEEEEEc------CCCeEEEEeCCC
Confidence 3333 44 4555442 346799999875
No 185
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=54.18 E-value=1.2e+02 Score=26.87 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=71.4
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-+++....+..+.|||..|++....-..+. .....+.+++.. .+-+.+ .....+.+++..++.-. ..
T Consensus 117 ~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~----~~V~~v~~~~~~-~~l~sg--s~D~~i~iwd~~~~~~~--~~ 187 (410)
T 1vyh_C 117 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHT----DSVQDISFDHSG-KLLASC--SADMTIKLWDFQGFECI--RT 187 (410)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS----SCEEEEEECTTS-SEEEEE--ETTSCCCEEETTSSCEE--EC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccC----CcEEEEEEcCCC-CEEEEE--eCCCeEEEEeCCCCcee--EE
Confidence 3345444443467789999998887544322111 114455666643 333222 34566778887664321 11
Q ss_pred ccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEeec
Q 040165 181 NLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVCC 256 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~~ 256 (358)
+.. ....-.++.+ +|.....+... ..|..+|+.++.... +.... .....+... +|.+.+.+.
T Consensus 188 -----~~~-h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~g~~l~s~s- 253 (410)
T 1vyh_C 188 -----MHG-HDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTLIASCS- 253 (410)
T ss_dssp -----CCC-CSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSEEEEEE-
T ss_pred -----EcC-CCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEeCCC-ccEEEEEECCCCCEEEEEc-
Confidence 110 0001112222 45443333332 488999998765422 22111 111222222 666666552
Q ss_pred ccccCCCCcEEEEEEcc
Q 040165 257 SNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 257 ~~~~~~~~~~~vW~l~~ 273 (358)
....+.+|.+..
T Consensus 254 -----~D~~v~vwd~~~ 265 (410)
T 1vyh_C 254 -----NDQTVRVWVVAT 265 (410)
T ss_dssp -----TTSCEEEEETTT
T ss_pred -----CCCeEEEEECCC
Confidence 346799998764
No 186
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.70 E-value=1e+02 Score=26.19 Aligned_cols=97 Identities=6% Similarity=-0.104 Sum_probs=49.4
Q ss_pred EEEEEECCCCe-eEEecCCCCCCceEEEE-E--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccc
Q 040165 218 VIIAFDLAEEK-FCRVGEACHPRSVSLGV-V--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVR 293 (358)
Q Consensus 218 ~i~~fD~~~~~-~~~i~~P~~~~~~~l~~-~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~ 293 (358)
.+..+|..+.+ ......+..+....+.. . +|.+++.+. ....+.+|.++.. .-........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s------~dg~i~~wd~~~~----~~~~~~~~~~----- 169 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD------NRGTIGFQSYEDD----SQYIVHSAKS----- 169 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE------TTCCEEEEESSSS----CEEEEECCCS-----
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe------CCCcEEEEECCCC----cEEEEEecCC-----
Confidence 55666766655 33333332111122221 1 455555452 3468999998752 2211111111
Q ss_pred cCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEE
Q 040165 294 YHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLE 333 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~ 333 (358)
......+++ ..+|.++......+.+..||+++++..
T Consensus 170 -~~~i~~~~~---~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 170 -DVEYSSGVL---HKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp -SCCCCEEEE---CTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred -CCceEEEEE---CCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 111445566 567777766544445999999987654
No 187
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=53.60 E-value=1e+02 Score=26.08 Aligned_cols=201 Identities=9% Similarity=-0.024 Sum_probs=96.7
Q ss_pred eCCceEEEEcccccceeccCCCCCCC---------------CCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISL---------------GSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW 175 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~---------------~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W 175 (358)
.....++.+||.+++...+....... ......++.+|+..+..-|. .....+..|+..++..
T Consensus 37 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~---d~~~~i~~~d~~~g~~ 113 (322)
T 2fp8_A 37 VQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV---DCYYHLSVVGSEGGHA 113 (322)
T ss_dssp CTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE---ETTTEEEEECTTCEEC
T ss_pred cCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE---ECCCCEEEEeCCCCEE
Confidence 34566777888877655432211000 00114567777644432222 1223467777776665
Q ss_pred EecccccccccccccCCCCceEEE---CceEEEEeecCCC-----------CCCCcEEEEEECCCCeeEEecCCCCCCce
Q 040165 176 RDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHF-----------GSQDPVIIAFDLAEEKFCRVGEACHPRSV 241 (358)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~-----------~~~~~~i~~fD~~~~~~~~i~~P~~~~~~ 241 (358)
+.+... ...........+.+ +|.+|+....... ......|..||+.+.+...+.-.... --
T Consensus 114 ~~~~~~----~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-p~ 188 (322)
T 2fp8_A 114 TQLATS----VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV-PG 188 (322)
T ss_dssp EEEESE----ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESC-CC
T ss_pred EEeccc----CCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCcc-Cc
Confidence 544321 00000011122333 6788876543100 01124799999988776544111100 11
Q ss_pred EEEEE-CCe-eEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-
Q 040165 242 SLGVV-GGC-LSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK- 318 (358)
Q Consensus 242 ~l~~~-~g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~- 318 (358)
.++.. +|+ |++.. . ....+.++.++... ......... . . . ...+++ ..+|+|++....
T Consensus 189 gia~~~dg~~lyv~d-----~-~~~~I~~~~~~~~~-~~~~~~~~~--~---~---g-P~gi~~---d~~G~l~va~~~~ 249 (322)
T 2fp8_A 189 GAEVSADSSFVLVAE-----F-LSHQIVKYWLEGPK-KGTAEVLVK--I---P---N-PGNIKR---NADGHFWVSSSEE 249 (322)
T ss_dssp EEEECTTSSEEEEEE-----G-GGTEEEEEESSSTT-TTCEEEEEE--C---S---S-EEEEEE---CTTSCEEEEEEEE
T ss_pred ceEECCCCCEEEEEe-----C-CCCeEEEEECCCCc-CCccceEEe--C---C---C-CCCeEE---CCCCCEEEEecCc
Confidence 23443 555 66654 1 23455555554311 123333222 1 1 1 233444 556788887644
Q ss_pred ---------cceEEEEECCCCeEEEeeccc
Q 040165 319 ---------WREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 319 ---------~~~l~~yd~~t~~~~~v~~~~ 339 (358)
...++.||++.+..+.+ ...
T Consensus 250 ~~~~~~~~~~~~v~~~d~~G~~~~~~-~~~ 278 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEFGNILEVI-PLP 278 (322)
T ss_dssp TTSSTTSCEEEEEEEECTTSCEEEEE-ECC
T ss_pred ccccccCCCccEEEEECCCCCEEEEE-ECC
Confidence 23599999987766666 543
No 188
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=53.59 E-value=1.2e+02 Score=26.92 Aligned_cols=156 Identities=10% Similarity=0.018 Sum_probs=77.9
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCc
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDP 217 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~ 217 (358)
...+.++|..+.+-+.+ .....+.+++..++.-..... .. +....=.++.+ +|.+...+... .
T Consensus 122 V~~l~~~P~~~~~lasG--s~dg~i~lWd~~~~~~~~~~~-----~~-gH~~~V~~l~f~p~~~~~l~s~s~D------~ 187 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVG--SKGGDIMLWNFGIKDKPTFIK-----GI-GAGGSITGLKFNPLNTNQFYASSME------G 187 (435)
T ss_dssp EEEEEECSSCTTCEEEE--ETTSCEEEECSSCCSCCEEEC-----CC-SSSCCCCEEEECSSCTTEEEEECSS------S
T ss_pred EEEEEEeCCCCCEEEEE--eCCCEEEEEECCCCCceeEEE-----cc-CCCCCEEEEEEeCCCCCEEEEEeCC------C
Confidence 45577777655543333 345678888877664322211 10 11111223333 45433333322 4
Q ss_pred EEEEEECCCCeeEEecCC-CCC-CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 218 VIIAFDLAEEKFCRVGEA-CHP-RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 218 ~i~~fD~~~~~~~~i~~P-~~~-~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
.|-.+|+.++....+... ... ....+... +|++.+.+ .....+.+|.++.. ..+ . +..+
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g------~~dg~i~~wd~~~~---~~~----~-----~~~h 249 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG------DNVGNVILLNMDGK---ELW----N-----LRMH 249 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEE------CSSSBEEEEESSSC---BCC----C-----SBCC
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEE------eCCCcEeeeccCcc---eeE----E-----Eecc
Confidence 788999998877665433 111 22334444 67666665 23468999987631 111 1 1122
Q ss_pred CceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCCe
Q 040165 295 HGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNERT 331 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~~ 331 (358)
......+++ ..+++ +++.....+.+..||+++.+
T Consensus 250 ~~~v~~v~~---~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 250 KKKVTHVAL---NPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SSCEEEEEE---CTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred cceEEeeee---cCCCceEEEEecCcceeeEEeccccc
Confidence 222344444 33444 55544333347788887654
No 189
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=53.27 E-value=1.2e+02 Score=26.61 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=73.2
Q ss_pred EEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEE
Q 040165 142 YGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVI 219 (358)
Q Consensus 142 ~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i 219 (358)
..+.+.+. +++-+.+ .....+.+++..+++-...-. . ....-.++.+ +|.....+... ..|
T Consensus 127 ~~v~~s~d-g~~l~s~--~~d~~i~iwd~~~~~~~~~~~-------~-h~~~v~~~~~~p~~~~l~s~s~d------~~v 189 (393)
T 1erj_A 127 RSVCFSPD-GKFLATG--AEDRLIRIWDIENRKIVMILQ-------G-HEQDIYSLDYFPSGDKLVSGSGD------RTV 189 (393)
T ss_dssp EEEEECTT-SSEEEEE--ETTSCEEEEETTTTEEEEEEC-------C-CSSCEEEEEECTTSSEEEEEETT------SEE
T ss_pred EEEEECCC-CCEEEEE--cCCCeEEEEECCCCcEEEEEc-------c-CCCCEEEEEEcCCCCEEEEecCC------CcE
Confidence 34555554 3333322 345678888887764322111 0 0000111222 44433333332 478
Q ss_pred EEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecC--Ccccc
Q 040165 220 IAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDND--IMVRY 294 (358)
Q Consensus 220 ~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~--~~~~~ 294 (358)
..+|+.+.+.... ... .....+... +|++.+.+. ....+.+|.++. +. .+..+... ...++
T Consensus 190 ~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s------~d~~v~iwd~~~----~~--~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYIAAGS------LDRAVRVWDSET----GF--LVERLDSENESGTGH 255 (393)
T ss_dssp EEEETTTTEEEEEEECS--SCEEEEEECSTTCCEEEEEE------TTSCEEEEETTT----CC--EEEEEC------CCC
T ss_pred EEEECCCCeeEEEEEcC--CCcEEEEEECCCCCEEEEEc------CCCcEEEEECCC----Cc--EEEeecccccCCCCC
Confidence 8999988765432 221 112223332 666666652 346799998764 11 22233211 11122
Q ss_pred CceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 295 HGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
......+++ ..+|+.++.....+.+..+|+++.
T Consensus 256 ~~~v~~v~~---~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 256 KDSVYSVVF---TRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp SSCEEEEEE---CTTSSEEEEEETTSEEEEEEC---
T ss_pred CCCEEEEEE---CCCCCEEEEEeCCCEEEEEECCCC
Confidence 233455566 567776555544445889998764
No 190
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=52.99 E-value=99 Score=25.75 Aligned_cols=194 Identities=8% Similarity=-0.009 Sum_probs=0.0
Q ss_pred EEEeecceEEEEEe------------CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEE
Q 040165 98 IIGSCNGLVCMALH------------GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLL 165 (358)
Q Consensus 98 ~~~s~~Gll~~~~~------------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~ 165 (358)
+.-+.+|-.++... ....+.++|+.+++....-..... ...+.+++..+...+. ...+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~-----~~~i 156 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWARDGSKLYGL-----GRDL 156 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECTTSSCEEEE-----SSSE
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECCCCCEEEEe-----CCeE
Q ss_pred EEEEcCCCceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCc---------------------EEEEEEC
Q 040165 166 KVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDP---------------------VIIAFDL 224 (358)
Q Consensus 166 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~---------------------~i~~fD~ 224 (358)
.+++..+++-... .+...........-+|...|........ . .|..+|+
T Consensus 157 ~~~d~~~~~~~~~-------~~~~~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 157 HVMDPEAGTLVED-------KPIQSWEAETYAQPDVLAVWNQHESSGV---MATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEETTTTEEEEE-------ECSTTTTTTTBCCCBCCCCCCCCTTTTE---EEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEECCCCcEeee-------eeccccCCCceeCCCccEEeeeccCCCc---eeeeeeccccccccccccccccceEEEeC
Q ss_pred CCCeeEEecCC-CCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEE
Q 040165 225 AEEKFCRVGEA-CHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLC 302 (358)
Q Consensus 225 ~~~~~~~i~~P-~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~ 302 (358)
.+.+...+..+ .......+... +|+..++. ...+.+|.++. ...+..++.... ...++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~------~~~~~~~~~~~~------~~~~~ 286 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEK------NASIKRVPLPHS------YYSVN 286 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTT------TEEEEEEECSSC------CCEEE
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCC------CcCcceecCCCc------eeeEE
Q ss_pred EeeecCCCcEEEEEcCcceEEEEECCCCeEEE
Q 040165 303 TATGTDGGDEIIMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 303 ~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~ 334 (358)
+ ..+|+.++.....+.+..||+++++...
T Consensus 287 ~---s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 287 V---STDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp E---CTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred E---CCCCCEEEEEcCCCcEEEEECcCCcEEE
No 191
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.55 E-value=1.1e+02 Score=26.07 Aligned_cols=202 Identities=11% Similarity=0.040 Sum_probs=97.8
Q ss_pred eEEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCC-CCCeEEEEEEccceEEEEEEcCCCce
Q 040165 97 VIIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSS-TDDYKVLAVSCLRVLLKVFSMKAFSW 175 (358)
Q Consensus 97 ~~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~-~~~ykvv~~~~~~~~~~vyss~t~~W 175 (358)
.+.++.+|.+.+- +......++|..+++...--.... ......+.++|. .+.+-+.+ .....+.+|+.++++-
T Consensus 88 ~~s~s~D~~i~~w-~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~ 161 (343)
T 3lrv_A 88 IISRGPCNRLLLL-YPGNQITILDSKTNKVLREIEVDS---ANEIIYMYGHNEVNTEYFIWA--DNRGTIGFQSYEDDSQ 161 (343)
T ss_dssp EEEECSTTEEEEE-ETTTEEEEEETTTCCEEEEEECCC---SSCEEEEECCC---CCEEEEE--ETTCCEEEEESSSSCE
T ss_pred eEEecCCCeEEEE-EccCceEEeecCCcceeEEeecCC---CCCEEEEEcCCCCCCCEEEEE--eCCCcEEEEECCCCcE
Confidence 3556667777665 455667777877776322211110 011455666662 24443333 3456789999887754
Q ss_pred EecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeE--EecCCCCC-CceEEEEE-CCe
Q 040165 176 RDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFC--RVGEACHP-RSVSLGVV-GGC 249 (358)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~--~i~~P~~~-~~~~l~~~-~g~ 249 (358)
..... .... ..-.++.+ +|.+...+... ..|-.+|+.+.+-. .+... +. ....+.-. +|.
T Consensus 162 ~~~~~-----~~~~--~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 162 YIVHS-----AKSD--VEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPDQASSRFPVD-EEAKIKEVKFADNGY 227 (343)
T ss_dssp EEEEC-----CCSS--CCCCEEEECTTSCEEEEECTT------SCEEEEESSCTTSCCEECCCC-TTSCEEEEEECTTSS
T ss_pred EEEEe-----cCCC--CceEEEEECCCCCEEEEEcCC------CEEEEEECCCCCCCccEEecc-CCCCEEEEEEeCCCC
Confidence 32221 0100 11122222 46655554443 47899999987643 22321 22 22333333 666
Q ss_pred eEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcC-cceEEEEEC-
Q 040165 250 LSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINK-WREFISCNL- 327 (358)
Q Consensus 250 L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~l~~yd~- 327 (358)
..+.+ . +. .+.+|.+..... . ..+..............+++ ..+|+.++.... .+.+..||.
T Consensus 228 ~l~s~-----~-~~-~v~iwd~~~~~~--~----~~~~~~~~~~~~~~~~~~~~---~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 228 WMVVE-----C-DQ-TVVCFDLRKDVG--T----LAYPTYTIPEFKTGTVTYDI---DDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EEEEE-----E-SS-BEEEEETTSSTT--C----BSSCCCBC-----CCEEEEE---CTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEE-----e-CC-eEEEEEcCCCCc--c----eeecccccccccccceEEEE---CCCCCEEEEecCCCCcEEEEEEc
Confidence 65555 2 22 899999876321 1 11111000000000023555 556775555222 223666666
Q ss_pred -CCCeEEE
Q 040165 328 -NERTLEE 334 (358)
Q Consensus 328 -~t~~~~~ 334 (358)
..+.|+.
T Consensus 292 ~~~~~~~~ 299 (343)
T 3lrv_A 292 KKTKNWTK 299 (343)
T ss_dssp TTTCSEEE
T ss_pred ccccceEe
Confidence 5667876
No 192
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=52.05 E-value=1.1e+02 Score=25.86 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=94.6
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-+++.......+.|||..+++....-.... .....+.+++. +++-+.+ .....+.+|+..+++-...-.
T Consensus 41 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~-~~~l~s~--~~dg~i~iwd~~~~~~~~~~~ 113 (369)
T 3zwl_B 41 NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT----GTIWSIDVDCF-TKYCVTG--SADYSIKLWDVSNGQCVATWK 113 (369)
T ss_dssp CTTSCEEEEEESSSCEEEEETTTCCEEEEECCCS----SCEEEEEECTT-SSEEEEE--ETTTEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC----CcEEEEEEcCC-CCEEEEE--eCCCeEEEEECCCCcEEEEee
Confidence 3345444442456678889988776544322111 12445666664 3343333 345679999988775322211
Q ss_pred ccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCee----EEec-CCC-----CC---CceEEEEE-
Q 040165 181 NLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF----CRVG-EAC-----HP---RSVSLGVV- 246 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~----~~i~-~P~-----~~---~~~~l~~~- 246 (358)
. +... ..-...-+|.....+.... ......|..+|+.+..- .... -+. .. ....+...
T Consensus 114 ~-----~~~v--~~~~~~~~~~~l~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 114 S-----PVPV--KRVEFSPCGNYFLAILDNV-MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp C-----SSCE--EEEEECTTSSEEEEEECCB-TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred c-----CCCe--EEEEEccCCCEEEEecCCc-cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 0 0000 0000111333333332210 00013566666654321 1111 110 11 12222222
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCN 326 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd 326 (358)
+|++.+++. ....+.+|.++.. ...+..+.... .....+++ ..+|+.++.....+.+..||
T Consensus 186 ~~~~l~~~~------~dg~i~i~d~~~~-----~~~~~~~~~~~-----~~v~~~~~---~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 186 KGKYIIAGH------KDGKISKYDVSNN-----YEYVDSIDLHE-----KSISDMQF---SPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp GGCEEEEEE------TTSEEEEEETTTT-----TEEEEEEECCS-----SCEEEEEE---CTTSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEc------CCCEEEEEECCCC-----cEeEEEEecCC-----CceeEEEE---CCCCCEEEEecCCceEEEEE
Confidence 566555552 3468999987641 23344444321 12444555 55677555544333599999
Q ss_pred CCCCeEEEe
Q 040165 327 LNERTLEEI 335 (358)
Q Consensus 327 ~~t~~~~~v 335 (358)
+++++....
T Consensus 247 ~~~~~~~~~ 255 (369)
T 3zwl_B 247 VSTLQVLKK 255 (369)
T ss_dssp TTTCCEEEE
T ss_pred CCCCceeee
Confidence 998876555
No 193
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=51.38 E-value=1.3e+02 Score=26.75 Aligned_cols=99 Identities=5% Similarity=-0.024 Sum_probs=52.8
Q ss_pred cEEEEEECCCCeeEE--ecCC-CCC-CceEEEEE-C---CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeec
Q 040165 217 PVIIAFDLAEEKFCR--VGEA-CHP-RSVSLGVV-G---GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDN 288 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~--i~~P-~~~-~~~~l~~~-~---g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~ 288 (358)
..+..+|+.+..... +... .+. ....+.-. + |++.+.+. ....+.+|.++.. .- +..+-
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~------~d~~i~vwd~~~~----~~--~~~~~- 237 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD------RDEHIKISHYPQC----FI--VDKWL- 237 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE------TTSCEEEEEESCT----TC--EEEEC-
T ss_pred CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc------CCCcEEEEECCCC----ce--eeeee-
Confidence 368888887655331 1111 111 22233333 5 66666652 3468999998752 11 11111
Q ss_pred CCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 289 DIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
.++......+++ . +|+.++.....+.+..||+++++....
T Consensus 238 ---~~h~~~v~~~~~---s-d~~~l~s~~~d~~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 238 ---FGHKHFVSSICC---G-KDYLLLSAGGDDKIFAWDWKTGKNLST 277 (450)
T ss_dssp ---CCCSSCEEEEEE---C-STTEEEEEESSSEEEEEETTTCCEEEE
T ss_pred ---cCCCCceEEEEE---C-CCCEEEEEeCCCeEEEEECCCCcEeee
Confidence 111222455566 5 677665554444699999999875444
No 194
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=51.12 E-value=1.1e+02 Score=25.93 Aligned_cols=142 Identities=6% Similarity=-0.052 Sum_probs=71.7
Q ss_pred cceEEEEEEcCCCceEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCC
Q 040165 161 LRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACH 237 (358)
Q Consensus 161 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~ 237 (358)
....+.+++..++.-...-. . ....-.++.+ +|.+...+... ..|-.+|+.+.+.... .....
T Consensus 162 ~d~~i~~wd~~~~~~~~~~~-------~-h~~~v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~~~~~~~h~~ 227 (340)
T 1got_B 162 GDTTCALWDIETGQQTTTFT-------G-HTGDVMSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQTFTGHES 227 (340)
T ss_dssp TTSCEEEEETTTTEEEEEEC-------C-CSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEEEEECCCSS
T ss_pred CCCcEEEEECCCCcEEEEEc-------C-CCCceEEEEECCCCCEEEEEeCC------CcEEEEECCCCeeEEEEcCCcC
Confidence 45668888887765322111 0 0000111222 45544444432 4788899887654322 21111
Q ss_pred CCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEE
Q 040165 238 PRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMI 316 (358)
Q Consensus 238 ~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 316 (358)
....+.-. +|.+.+.+. ....+.+|.+... . ....+..... ......+++ ..+|.+++..
T Consensus 228 -~v~~v~~~p~~~~l~s~s------~d~~v~iwd~~~~----~--~~~~~~~~~~---~~~v~~~~~---s~~g~~l~~g 288 (340)
T 1got_B 228 -DINAICFFPNGNAFATGS------DDATCRLFDLRAD----Q--ELMTYSHDNI---ICGITSVSF---SKSGRLLLAG 288 (340)
T ss_dssp -CEEEEEECTTSSEEEEEE------TTSCEEEEETTTT----E--EEEEECCTTC---CSCEEEEEE---CTTSSEEEEE
T ss_pred -CEEEEEEcCCCCEEEEEc------CCCcEEEEECCCC----c--EEEEEccCCc---ccceEEEEE---CCCCCEEEEE
Confidence 12233333 666655552 3468999988651 1 2222222111 111445566 6678766665
Q ss_pred cCcceEEEEECCCCeEEEe
Q 040165 317 NKWREFISCNLNERTLEEI 335 (358)
Q Consensus 317 ~~~~~l~~yd~~t~~~~~v 335 (358)
...+.+..||..+.+....
T Consensus 289 ~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 289 YDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp ETTSEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEEcccCcEeeE
Confidence 5544699999987765443
No 195
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=50.83 E-value=1.2e+02 Score=26.24 Aligned_cols=195 Identities=12% Similarity=0.026 Sum_probs=102.5
Q ss_pred EeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
+..+|.|.+.......+..+++.++....+...... ...++.+|+..+...+.- .....+++++.....-+.+.
T Consensus 81 d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~----~p~glavd~~~g~ly~~d--~~~~~I~~~~~dG~~~~~l~ 154 (349)
T 3v64_C 81 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE----SPGGLAVDWVHDKLYWTD--SGTSRIEVANLDGAHRKVLL 154 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS----CCCEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEE
T ss_pred eccccEEEEEeccCCceEEEecCCCCceEEEeCCCC----CccEEEEecCCCeEEEEc--CCCCeEEEEcCCCCceEEEE
Confidence 446677777633567788888887665444222111 134667787665432222 33457888887654322221
Q ss_pred cccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE--CCeeEEE
Q 040165 180 YNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV--GGCLSLN 253 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~--~g~L~lv 253 (358)
. ... ....++.+ +|.|||..... ...|..+|+....-..+ .-... .--.|+.. +|+||++
T Consensus 155 ~-------~~l-~~P~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~~~~-~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 155 W-------QSL-EKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADTHLF-WPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp C-------TTC-SCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCSSCS-CEEEEEEETTTTEEEEE
T ss_pred e-------CCC-CCcceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEECCCC-CcceEEEeCCCCEEEEE
Confidence 1 011 11223333 68999987653 25899999886543333 21111 12345554 7888888
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe-E
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT-L 332 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~-~ 332 (358)
. . ....+....++. . .. ..+ +... + ..|.++.+ .++.||+.....+.+..+|..+++ .
T Consensus 221 D-----~-~~~~I~~~~~dG--~-~~-~~~--~~~~-~------~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 221 D-----A-KHHVIERANLDG--S-HR-KAV--ISQG-L------PHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp E-----T-TTTEEEEEETTS--C-SC-EEE--ECSS-C------SSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred E-----C-CCCEEEEEeCCC--C-ce-EEE--EeCC-C------CCceEEEE--ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 6 2 334454444432 2 11 111 1111 1 34555422 246688887766679999965554 3
Q ss_pred EEe
Q 040165 333 EEI 335 (358)
Q Consensus 333 ~~v 335 (358)
+.+
T Consensus 280 ~~i 282 (349)
T 3v64_C 280 EII 282 (349)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 196
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=50.76 E-value=38 Score=24.35 Aligned_cols=42 Identities=5% Similarity=0.069 Sum_probs=30.2
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS 159 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 159 (358)
-.++++||.|++|.+...... ...+.+..|...+.|+|+...
T Consensus 11 A~V~~~d~~~~~W~p~~~~~g----~s~V~~~~d~~~~~yrIv~~~ 52 (112)
T 1evh_A 11 AAVMVYDDANKKWVPAGGSTG----FSRVHIYHHTGNNTFRVVGRK 52 (112)
T ss_dssp EEEEEEETTTTEEEEGGGCCS----CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCceEECCCCCC----ceEEEEEEECCCCEEEEEEEE
Confidence 357889999998866542111 124778889988999998864
No 197
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=50.62 E-value=1.5e+02 Score=27.27 Aligned_cols=135 Identities=8% Similarity=-0.007 Sum_probs=67.9
Q ss_pred ceEEEEEEcCCCceEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCC-CC
Q 040165 162 RVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEAC-HP 238 (358)
Q Consensus 162 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~-~~ 238 (358)
...+.+|+..++.... .. ... ....-.++.+ +|.+...+... ..|..+|+.+.+-... +.. +.
T Consensus 466 d~~i~~~~~~~~~~~~-~~-----~~~-~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~~~-~~~~h~ 531 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF-DL-----KTP-LRAKPSYISISPSETYIAAGDVM------GKILLYDLQSREVKTS-RWAFRT 531 (615)
T ss_dssp TSCEEEEETTEEEEEE-EC-----SSC-CSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEC-CSCCCS
T ss_pred CCeEEEEECCCccccc-cc-----cCC-ccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCCCcceeE-eecCCC
Confidence 5678888888765532 11 110 0011122333 66655555443 4788999987665332 221 22
Q ss_pred -CceEEEEE-----------CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeee
Q 040165 239 -RSVSLGVV-----------GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATG 306 (358)
Q Consensus 239 -~~~~l~~~-----------~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~ 306 (358)
....+.-. +|++.+.+. ....+.+|.++... ..+..+. ++.....-+++
T Consensus 532 ~~v~~~~~sp~~~~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~-----~~~~~~~-----~h~~~v~~l~~--- 592 (615)
T 1pgu_A 532 SKINAISWKPAEKGANEEEIEEDLVATGS------LDTNIFIYSVKRPM-----KIIKALN-----AHKDGVNNLLW--- 592 (615)
T ss_dssp SCEEEEEECCCC------CCSCCEEEEEE------TTSCEEEEESSCTT-----CCEEETT-----SSTTCEEEEEE---
T ss_pred CceeEEEEcCccccccccccCCCEEEEEc------CCCcEEEEECCCCc-----eechhhh-----cCccceEEEEE---
Confidence 12223322 566666652 34689999987621 1222222 12222445555
Q ss_pred cCCCcEEEEEcCcceEEEEECCCC
Q 040165 307 TDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 307 ~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
..+|. ++.....+.+..+|++++
T Consensus 593 s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 593 ETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EETTE-EEEEETTSCEEEEEEC--
T ss_pred cCCCC-eEEecCCceEEEEeeecC
Confidence 45666 544443335888888763
No 198
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.56 E-value=1.3e+02 Score=26.31 Aligned_cols=192 Identities=9% Similarity=0.006 Sum_probs=92.1
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNL 182 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~ 182 (358)
+|-.++.....+.+.+||..+++....-.... .....+.+++ . .++.. .....+.+++..+..-....
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~---~-~l~~~-~~dg~i~i~d~~~~~~~~~~--- 212 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ----ARVGCLSWNR---H-VLSSG-SRSGAIHHHDVRIANHQIGT--- 212 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCS----SCEEEEEEET---T-EEEEE-ETTSEEEEEETTSSSCEEEE---
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecCCC----CceEEEEECC---C-EEEEE-cCCCCEEEEecccCcceeeE---
Confidence 44333332356677888877766543322111 1133344433 2 22222 35567888888743211110
Q ss_pred ccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE--CCeeEEEeeccc
Q 040165 183 GVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV--GGCLSLNVCCSN 258 (358)
Q Consensus 183 ~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~--~g~L~lv~~~~~ 258 (358)
+.. ....-.++.+ +|.....+... ..|..+|+.+.+-...-.........+... ++.+.+.++.
T Consensus 213 ---~~~-~~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g-- 280 (401)
T 4aez_A 213 ---LQG-HSSEVCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG-- 280 (401)
T ss_dssp ---EEC-CSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC--
T ss_pred ---EcC-CCCCeeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC--
Confidence 000 0011112222 45555555443 478899998765433211111112233333 3344444411
Q ss_pred ccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEE-E-cCcceEEEEECCCCeEEEe
Q 040165 259 CVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIM-I-NKWREFISCNLNERTLEEI 335 (358)
Q Consensus 259 ~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~-~~~~~l~~yd~~t~~~~~v 335 (358)
.....+.+|.++. . ..+..+.... ....+++ ..+|..++. . ...+.+..||.++++...+
T Consensus 281 --s~d~~i~i~d~~~----~--~~~~~~~~~~------~v~~~~~---s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 281 --TMDKQIHFWNAAT----G--ARVNTVDAGS------QVTSLIW---SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp --TTTCEEEEEETTT----C--CEEEEEECSS------CEEEEEE---CSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred --CCCCEEEEEECCC----C--CEEEEEeCCC------cEEEEEE---CCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 1356899998865 1 2333333221 1445555 556775544 2 1233599999999877666
No 199
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=49.89 E-value=1.2e+02 Score=25.61 Aligned_cols=74 Identities=7% Similarity=0.082 Sum_probs=38.2
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCC-CCCeEEEEEEccceEEEEEEcCCCceEecc
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSS-TDDYKVLAVSCLRVLLKVFSMKAFSWRDVH 179 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~-~~~ykvv~~~~~~~~~~vyss~t~~W~~~~ 179 (358)
.+|-.+.....+..+.|||..+++...+-.... +. .....+.+.+. .+.+-+.+ .....+.+++.+++.|....
T Consensus 23 ~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~-~~V~~v~~~~~~~~~~l~s~--s~D~~v~iWd~~~~~~~~~~ 97 (316)
T 3bg1_A 23 YYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HE-GPVWQVAWAHPMYGNILASC--SYDRKVIIWREENGTWEKSH 97 (316)
T ss_dssp GGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CS-SCEEEEEECCGGGSSCEEEE--ETTSCEEEECCSSSCCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CC-ccEEEEEeCCCCCCCEEEEE--ECCCEEEEEECCCCcceEEE
Confidence 445444443466778888887765322211111 11 11344555442 23333323 34567889998888775543
No 200
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=49.45 E-value=1.3e+02 Score=25.94 Aligned_cols=63 Identities=5% Similarity=-0.022 Sum_probs=34.9
Q ss_pred CCCcEEEEEEccCCCCCceeEEEEeecCCcccc---CceeeEEEEeeecCCCcEEEEEcCc---ceEEEEECCCCeEEEe
Q 040165 262 KTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY---HGSLVTLCTATGTDGGDEIIMINKW---REFISCNLNERTLEEI 335 (358)
Q Consensus 262 ~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~g~i~~~~~~~---~~l~~yd~~t~~~~~v 335 (358)
....+.+|.++. . ..+..+... ..+ ......+++ ..+|+.++..... +.+..||+++++....
T Consensus 205 ~dg~i~i~d~~~----~--~~~~~~~~~--~~h~~~~~~i~~i~~---~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 205 NNGTVQISELST----L--RPLYNFESQ--HSMINNSNSIRSVKF---SPQGSLLAIAHDSNSFGCITLYETEFGERIGS 273 (397)
T ss_dssp TTSEEEEEETTT----T--EEEEEEECC--C---CCCCCEEEEEE---CSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred CCCcEEEEECCC----C--ceeEEEecc--ccccccCCccceEEE---CCCCCEEEEEecCCCCceEEEEECCCCcccce
Confidence 356899998865 2 233333330 001 112445555 5567755555443 3599999998765443
No 201
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=49.42 E-value=1.8e+02 Score=27.75 Aligned_cols=196 Identities=11% Similarity=0.114 Sum_probs=97.8
Q ss_pred EEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEe
Q 040165 99 IGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRD 177 (358)
Q Consensus 99 ~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~ 177 (358)
.-+.+|-+++....+..+.|||..+++....-..+. .....+.+.+..+ +-+.+ .....+.+++..... ...
T Consensus 437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~-~l~s~--s~D~~i~iwd~~~~~~~~~ 509 (694)
T 3dm0_A 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT----KDVLSVAFSLDNR-QIVSA--SRDRTIKLWNTLGECKYTI 509 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS----SCEEEEEECTTSS-CEEEE--ETTSCEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC----CCEEEEEEeCCCC-EEEEE--eCCCEEEEEECCCCcceee
Confidence 334556655554567889999998876543211111 1144456666533 32222 244567777754432 221
Q ss_pred cccccccccccccCCCCceEEE--Cce-EEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEE
Q 040165 178 VHYNLGVKLFYGTESPPKGCLF--NGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSL 252 (358)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~l 252 (358)
... .......-.++.+ +|. -+.+++.. ...|-.+|+.+.+.... .... .....+... +|++.+
T Consensus 510 ~~~------~~~h~~~v~~~~~~~~~~~~~l~s~s~-----d~~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 510 SEG------GEGHRDWVSCVRFSPNTLQPTIVSASW-----DKTVKVWNLSNCKLRSTLAGHT-GYVSTVAVSPDGSLCA 577 (694)
T ss_dssp CSS------TTSCSSCEEEEEECSCSSSCEEEEEET-----TSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEE
T ss_pred ccC------CCCCCCcEEEEEEeCCCCcceEEEEeC-----CCeEEEEECCCCcEEEEEcCCC-CCEEEEEEeCCCCEEE
Confidence 111 0000001112222 221 12223222 14788899987655332 2111 112233443 677666
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL 332 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~ 332 (358)
.++ ....+.+|.+.. . ..+..+... .....+++ ..++.++....+.. +..+|+++++.
T Consensus 578 sg~------~Dg~i~iwd~~~----~--~~~~~~~~~------~~v~~~~~---sp~~~~l~~~~~~~-i~iwd~~~~~~ 635 (694)
T 3dm0_A 578 SGG------KDGVVLLWDLAE----G--KKLYSLEAN------SVIHALCF---SPNRYWLCAATEHG-IKIWDLESKSI 635 (694)
T ss_dssp EEE------TTSBCEEEETTT----T--EEEECCBCS------SCEEEEEE---CSSSSEEEEEETTE-EEEEETTTTEE
T ss_pred EEe------CCCeEEEEECCC----C--ceEEEecCC------CcEEEEEE---cCCCcEEEEEcCCC-EEEEECCCCCC
Confidence 652 346899998865 1 123333221 12455566 56676666655554 99999999876
Q ss_pred EEe
Q 040165 333 EEI 335 (358)
Q Consensus 333 ~~v 335 (358)
...
T Consensus 636 ~~~ 638 (694)
T 3dm0_A 636 VED 638 (694)
T ss_dssp EEE
T ss_pred hhh
Confidence 543
No 202
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=49.18 E-value=51 Score=25.64 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=29.3
Q ss_pred ceEEEEccccc-ceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE
Q 040165 114 KDFFIYNPSTR-AHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS 159 (358)
Q Consensus 114 ~~~~V~NP~T~-~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 159 (358)
-.++++||.|+ .|...-... ..+.+.+|...+.|+|+.+.
T Consensus 16 A~Vm~~D~~tk~~WvP~g~~~------~~V~i~~d~~rnsyRIvg~~ 56 (168)
T 1i2h_A 16 AHVFQIDPNTKKNWVPTSKHA------VTVSYFYDSTRNVYRIISLD 56 (168)
T ss_dssp EEEEEECTTSSCCSEESCSSC------EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCCCceeecCCCC------eEEEEEEcCCCCEEEEEEcc
Confidence 35788999997 897654322 24556789988999999874
No 203
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=49.15 E-value=67 Score=30.69 Aligned_cols=128 Identities=7% Similarity=-0.019 Sum_probs=69.7
Q ss_pred EECceEEEEeecCCCCCCCcEEEEEECCCCe----------eEEe-cCCCCCCceEEEE-ECCeeEEEeecccccCCCCc
Q 040165 198 LFNGALHWLVSGFHFGSQDPVIIAFDLAEEK----------FCRV-GEACHPRSVSLGV-VGGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 198 ~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~----------~~~i-~~P~~~~~~~l~~-~~g~L~lv~~~~~~~~~~~~ 265 (358)
.=+|+.-+.+... ...+.+||+.+.+ ...+ .++....-..++- -+|.+|+.. ....+
T Consensus 285 sPDGk~v~V~~~~-----s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~------~ldsq 353 (595)
T 1fwx_A 285 APDKKHLCVAGKL-----SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSL------FLDSQ 353 (595)
T ss_dssp CTTSSEEEEECTT-----SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEE------TTTTE
T ss_pred cCCCCEEEEeCCC-----CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEE------ecCCc
Confidence 3467755555544 3689999998642 1122 3332222233333 377666665 24568
Q ss_pred EEEEEEccC----CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCc-ceE-----------EEEECC
Q 040165 266 FELWVMKQY----GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKW-REF-----------ISCNLN 328 (358)
Q Consensus 266 ~~vW~l~~~----~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~-~~l-----------~~yd~~ 328 (358)
+.+|.++.. ..+..+..+.+++...-+++. ...++.- -..+|+ ++...... +++ ..||..
T Consensus 354 V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~--~~~~g~t-~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 354 VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL--KTVMGET-LDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS 430 (595)
T ss_dssp EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE--EETTTTS-TTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred EEEEEhhHhhhhhcccccceeEEEeecccccccc--eeccceE-eCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence 999998761 112357788888875322210 1111110 045666 55443322 234 789999
Q ss_pred CCeEEEeeccc
Q 040165 329 ERTLEEIYRPN 339 (358)
Q Consensus 329 t~~~~~v~~~~ 339 (358)
+++++.+....
T Consensus 431 ~~~m~lv~d~p 441 (595)
T 1fwx_A 431 GDKMVLVHDGP 441 (595)
T ss_dssp SSSCEEEEEEE
T ss_pred CCcEEEEEEEc
Confidence 99999995443
No 204
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=48.67 E-value=1.5e+02 Score=26.68 Aligned_cols=204 Identities=9% Similarity=-0.090 Sum_probs=98.2
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEc--cceEEEEEEcCCCceEeccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSC--LRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~--~~~~~~vyss~t~~W~~~~~ 180 (358)
+|.|.+. +....+.+++|.+++...+.... ....++.+|+..+ ..|.-... ....+..++. .+.|.....
T Consensus 152 ~g~Lyv~-D~~~~I~~id~~~g~v~~~~~~~-----~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~-~~~~~~~~~ 223 (433)
T 4hw6_A 152 YDDLYWV-GQRDAFRHVDFVNQYVDIKTTNI-----GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR-ASGFTERLS 223 (433)
T ss_dssp TCEEEEE-CBTSCEEEEETTTTEEEEECCCC-----SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG-GGTTCCEEE
T ss_pred CCEEEEE-eCCCCEEEEECCCCEEEEeecCC-----CCccEEEECCCCC-EEEEcCCCCcccceEEEEEC-CCCeecccc
Confidence 5777666 32277888999888877764411 1245677777765 22221100 0122223332 222321111
Q ss_pred ccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCee-EEe-cCCCCCCceEEEEE-CCe-eEEE
Q 040165 181 NLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRV-GEACHPRSVSLGVV-GGC-LSLN 253 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i-~~P~~~~~~~l~~~-~g~-L~lv 253 (358)
++. . ....++.+ +|.||+..... ..|..||+.+.+. ..+ ..........++.. +|+ ||+.
T Consensus 224 -----~~~-~-~~P~giavd~~~G~lyv~d~~~------~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 224 -----LCN-A-RGAKTCAVHPQNGKIYYTRYHH------AMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp -----EEE-C-SSBCCCEECTTTCCEEECBTTC------SEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred -----ccc-c-CCCCEEEEeCCCCeEEEEECCC------CEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 111 1 11222333 68899876543 5899999987665 322 22211112235554 565 7777
Q ss_pred eecccccCCCCcEEEEEEccCCCCCceeEEEEe----ecCCcc----ccCceeeEEEEeee--------cCCCcEEEEEc
Q 040165 254 VCCSNCVDKTTDFELWVMKQYGVHSSWERLTKI----DNDIMV----RYHGSLVTLCTATG--------TDGGDEIIMIN 317 (358)
Q Consensus 254 ~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i----~~~~~~----~~~~~~~~~~~~~~--------~~~g~i~~~~~ 317 (358)
. . ....+..+.++.. .........+ ...... .......|.++.+. ..+|+||+...
T Consensus 291 d-----~-~~~~I~~~~~d~~--~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~ 362 (433)
T 4hw6_A 291 Y-----N-GKHCIYRVDYNRE--TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR 362 (433)
T ss_dssp E-----T-TTTEEEEEEBCTT--TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET
T ss_pred e-----C-CCCEEEEEeCCCC--CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC
Confidence 6 2 2344444444321 1111111111 000000 00122456666431 34566998887
Q ss_pred CcceEEEEECCCCeEEEee
Q 040165 318 KWREFISCNLNERTLEEIY 336 (358)
Q Consensus 318 ~~~~l~~yd~~t~~~~~v~ 336 (358)
...++..+|+ ++++..+.
T Consensus 363 ~n~~I~~~~~-~G~v~t~~ 380 (433)
T 4hw6_A 363 DSHTVRVLTP-EGRVTTYA 380 (433)
T ss_dssp TTTEEEEECT-TSEEEEEE
T ss_pred CCCEEEEECC-CCCEEEEE
Confidence 6667999997 56666663
No 205
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=47.79 E-value=1.7e+02 Score=26.90 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=58.9
Q ss_pred CcEEEEEECCCCee-EEecCCCCC---CceEEE-EECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC
Q 040165 216 DPVIIAFDLAEEKF-CRVGEACHP---RSVSLG-VVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI 290 (358)
Q Consensus 216 ~~~i~~fD~~~~~~-~~i~~P~~~---~~~~l~-~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~ 290 (358)
.+.|..||+.+.+- ..|+++... ..+.++ .-+|+...+.......+...++.+|..++ +.|.....|+...
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~----g~~~~~~vIdi~~ 302 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED----GKWNAEKVIEIPA 302 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET----TEEEEEEEEEECC
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC----CceeEEEEEeCCC
Confidence 36999999998654 335554211 112221 22666555552200001345677777764 5799888876543
Q ss_pred cc--c--------c---CceeeEEEEeeecCCCc-EEEEEcCcceEEEEECC
Q 040165 291 MV--R--------Y---HGSLVTLCTATGTDGGD-EIIMINKWREFISCNLN 328 (358)
Q Consensus 291 ~~--~--------~---~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~ 328 (358)
.. . + .....-+.+ ..+|+ ||+.....+.+..||..
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~l---S~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDI---SLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEE---CTTSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccccccCCCceeEEEE---CCCCCEEEEEeCCCCEEEEEEec
Confidence 21 0 0 111233344 66777 77777766679999985
No 206
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=47.46 E-value=1.4e+02 Score=25.73 Aligned_cols=202 Identities=9% Similarity=0.001 Sum_probs=94.5
Q ss_pred cceE-EEEEeCCceEEEEcccc------cceeccCCC-CC-------CCCCCceEEEeEeCCCCCeEEEEEEccceEEEE
Q 040165 103 NGLV-CMALHGCKDFFIYNPST------RAHKKLPDP-DI-------SLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKV 167 (358)
Q Consensus 103 ~Gll-~~~~~~~~~~~V~NP~T------~~~~~lP~~-~~-------~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~v 167 (358)
+|-. ++.......+.+||..+ ++.....+. .. .........+.+.+.. .++.. .....+.+
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~-~~dg~i~i 211 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATG-FNNGTVQI 211 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEE-CTTSEEEE
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEE-eCCCcEEE
Confidence 4443 44434677888998887 444321110 00 0001113345555543 33333 45678999
Q ss_pred EEcCCCceEeccccccccccccc---CCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCee-EEecCCC-----
Q 040165 168 FSMKAFSWRDVHYNLGVKLFYGT---ESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKF-CRVGEAC----- 236 (358)
Q Consensus 168 yss~t~~W~~~~~~~~~~~~~~~---~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~----- 236 (358)
|+..+++-...-. ..... ...-.++.+ +|.+...+..... ...|..||+.+.+- ..+..|.
T Consensus 212 ~d~~~~~~~~~~~-----~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 212 SELSTLRPLYNFE-----SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp EETTTTEEEEEEE-----CCC---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC------
T ss_pred EECCCCceeEEEe-----ccccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccc
Confidence 9988764322111 00000 011122222 4555444443100 03799999887654 3344321
Q ss_pred ------CC-CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcc-cc-------------
Q 040165 237 ------HP-RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMV-RY------------- 294 (358)
Q Consensus 237 ------~~-~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~-~~------------- 294 (358)
+. ....+.-. +|++.+.+. ....+.+|.++. ...+..+...... .+
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAG------WDGKLRFWDVKT------KERITTLNMHCDDIEIEEDILAVDEHGDS 351 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEE------TTSEEEEEETTT------TEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred cccccccCCcEEEEEECCCCCEEEEEe------CCCeEEEEEcCC------CceeEEEecccCcccchhhhhcccccccc
Confidence 22 22333333 666655552 346899998764 2345555521100 01
Q ss_pred --CceeeEEEEeeecCCC----------cEEEEEcCcceEEEEECCCCe
Q 040165 295 --HGSLVTLCTATGTDGG----------DEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 295 --~~~~~~~~~~~~~~~g----------~i~~~~~~~~~l~~yd~~t~~ 331 (358)
......+++ ..+| ++++.....+.+..||+++++
T Consensus 352 ~~~~~v~~~~~---~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 352 LAEPGVFDVKF---LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CSSCCEEEEEE---ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccCCceeEEEe---ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 222444555 4454 566555444469999988764
No 207
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=47.43 E-value=1.2e+02 Score=25.14 Aligned_cols=207 Identities=8% Similarity=0.083 Sum_probs=95.4
Q ss_pred ceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCC-CCeEEEEEEccceEEEEEEcCCC-ceEec--c
Q 040165 104 GLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSST-DDYKVLAVSCLRVLLKVFSMKAF-SWRDV--H 179 (358)
Q Consensus 104 Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~-~~ykvv~~~~~~~~~~vyss~t~-~W~~~--~ 179 (358)
|-++.....+..+.|||..++++..+...... ......+.+.|.. +.+-+.+ .....+.+|+.+++ .+... .
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~--s~d~~v~~wd~~~~~~~~~~~~~ 142 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVA--SSDGKVSVVEFKENGTTSPIIID 142 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCC--SSCEEEEEECCGGGCSEEEEE--ETTSEEEEEEBCSSSCBCCEEEE
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecC--CCceeEEEeCcCCCCcEEEEE--ECCCcEEEEEecCCCceeeeeee
Confidence 55555435678899999988765444322111 1114445666653 3333333 34567888888765 33211 0
Q ss_pred ccc-cc-ccccccCCC-C---ceEEECceEEEEeecCCCCCCCcEEEEEECCCCe--eEEe-cCCCCC-CceEEEEE-C-
Q 040165 180 YNL-GV-KLFYGTESP-P---KGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEK--FCRV-GEACHP-RSVSLGVV-G- 247 (358)
Q Consensus 180 ~~~-~~-~~~~~~~~~-~---~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i-~~P~~~-~~~~l~~~-~- 247 (358)
... .+ .+.+..... . ....-+|.+...+... ..|-.+|+.+.+ +..+ .+..+. ....+.-. +
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D------~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCC------CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence 000 00 000000000 0 0000113344434332 357777776533 4333 333222 12233322 3
Q ss_pred --CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEE
Q 040165 248 --GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISC 325 (358)
Q Consensus 248 --g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~y 325 (358)
+.+.+.+ .....+.+|.++.. ...|.+.. +.... +......+++ ..+|+.+......+.+..+
T Consensus 217 ~~~~~las~------s~D~~v~iWd~~~~--~~~~~~~~-~~~~~---~~~~v~~~~~---s~~g~~las~~~D~~v~lw 281 (297)
T 2pm7_B 217 LLRSYMASV------SQDRTCIIWTQDNE--QGPWKKTL-LKEEK---FPDVLWRASW---SLSGNVLALSGGDNKVTLW 281 (297)
T ss_dssp SSSEEEEEE------ETTSCEEEEEESST--TSCCEEEE-SSSSC---CSSCEEEEEE---CSSSCCEEEEETTSCEEEE
T ss_pred CCceEEEEE------ECCCcEEEEEeCCC--CCccceee-eeccc---CCCcEEEEEE---CCCCCEEEEEcCCCcEEEE
Confidence 3444433 23468999999762 23565421 21111 1122444555 5677755544333348888
Q ss_pred ECC-CCeEEEe
Q 040165 326 NLN-ERTLEEI 335 (358)
Q Consensus 326 d~~-t~~~~~v 335 (358)
+.. .++|+.+
T Consensus 282 ~~~~~g~w~~~ 292 (297)
T 2pm7_B 282 KENLEGKWEPA 292 (297)
T ss_dssp EECTTSCEEEC
T ss_pred EECCCCcEEec
Confidence 876 5678876
No 208
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=46.51 E-value=1.4e+02 Score=25.63 Aligned_cols=154 Identities=8% Similarity=-0.037 Sum_probs=81.0
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCc
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDP 217 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~ 217 (358)
...+.+.+...++-+.+ .....+.+|+..++....... .. .....-.++.+ +|.....+... .
T Consensus 76 v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~-----~~-~h~~~v~~~~~~~~~~~~l~s~~~d------~ 141 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVG--SKGGDIILWDYDVQNKTSFIQ-----GM-GPGDAITGMKFNQFNTNQLFVSSIR------G 141 (383)
T ss_dssp EEEEEECSSCTTEEEEE--EBTSCEEEEETTSTTCEEEEC-----CC-STTCBEEEEEEETTEEEEEEEEETT------T
T ss_pred EEEEEECCCCCCEEEEE--cCCCeEEEEeCCCcccceeee-----cC-CcCCceeEEEeCCCCCCEEEEEeCC------C
Confidence 44556666554444444 245678999998876654322 10 00011112223 33444444332 4
Q ss_pred EEEEEECCCCeeEEecCC-C-CCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 218 VIIAFDLAEEKFCRVGEA-C-HPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 218 ~i~~fD~~~~~~~~i~~P-~-~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
.|..+|+.++....+... . ......+... +|++.+.+. ....+.+|.++. . .+..+...
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~d~~~----~---~~~~~~~h----- 203 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD------STGRLLLLGLDG----H---EIFKEKLH----- 203 (383)
T ss_dssp EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE------TTSEEEEEETTS----C---EEEEEECS-----
T ss_pred EEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC------CCCCEEEEECCC----C---EEEEeccC-----
Confidence 899999998777666443 2 1222333433 666655552 346899998742 1 22233221
Q ss_pred CceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCC
Q 040165 295 HGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNE 329 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t 329 (358)
......+++ ..++. +++.....+.+..||+++
T Consensus 204 ~~~v~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 204 KAKVTHAEF---NPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp SSCEEEEEE---CSSCTTEEEEEETTSEEEEEEGGG
T ss_pred CCcEEEEEE---CCCCCCEEEEEeCCCEEEEEeCCC
Confidence 122444555 45565 665554444588888887
No 209
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=46.45 E-value=1.4e+02 Score=25.61 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=54.4
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEcc-----ceEEEEEEcCCCceEeccccccccccc
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCL-----RVLLKVFSMKAFSWRDVHYNLGVKLFY 188 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~-----~~~~~vyss~t~~W~~~~~~~~~~~~~ 188 (358)
..++++|..|++...+...+. ....+.+.|..++. ++..... ...+.+++..++..+.+... ..
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~-----~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-----~~ 236 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQ-----WLGHPIYRPYDDST-VAFCHEGPHDLVDARMWLINEDGTNMRKVKTH-----AE 236 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESS-----CEEEEEEETTEEEE-EEEEECSCTTTSSCSEEEEETTSCCCEESCCC-----CT
T ss_pred ceEEEEECCCCceEEeecCCc-----cccccEECCCCCCE-EEEEEecCCCCCcceEEEEeCCCCceEEeeeC-----CC
Confidence 568889999888776643321 13345566622222 2222211 34667777766655554431 10
Q ss_pred ccCCCCceE-EECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCC
Q 040165 189 GTESPPKGC-LFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEA 235 (358)
Q Consensus 189 ~~~~~~~~v-~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P 235 (358)
.. ...... .-+|. |++........ ...|..+|+.+.+...+ ..|
T Consensus 237 ~~-~~~~~~~spdg~~l~~~~~~~~~~--~~~l~~~d~~~g~~~~l~~~~ 283 (388)
T 3pe7_A 237 GE-SCTHEFWVPDGSALVYVSYLKGSP--DRFIYSADPETLENRQLTSMP 283 (388)
T ss_dssp TE-EEEEEEECTTSSCEEEEEEETTCC--CEEEEEECTTTCCEEEEEEEC
T ss_pred Cc-ccccceECCCCCEEEEEecCCCCC--cceEEEEecCCCceEEEEcCC
Confidence 00 000111 12565 66665543211 12599999998876554 444
No 210
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=45.79 E-value=1.3e+02 Score=24.84 Aligned_cols=155 Identities=6% Similarity=-0.026 Sum_probs=72.4
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
+.+|-.++.......+.|+|..+++..................+.+.+.......++.......+.+++..+..-.....
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 34444444434567788899888764433222211111123344555555444433332345567788777654332221
Q ss_pred ccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCeeEEEeeccc
Q 040165 181 NLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGCLSLNVCCSN 258 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~L~lv~~~~~ 258 (358)
.... ........++.....+.... ...|..+|+.+.+-.. +.... .....++-. +|++.+.++
T Consensus 239 -----~~~~--v~~~~~~~~~~~~~~~sg~~----d~~i~iwd~~~~~~~~~l~gH~-~~V~~l~~spdg~~l~S~s--- 303 (318)
T 4ggc_A 239 -----AHSQ--VCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKVAELKGHT-SRVLSLTMSPDGATVASAA--- 303 (318)
T ss_dssp -----CSSC--EEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSCEEEEE---
T ss_pred -----ceee--eeeeeecccccceEEEEEcC----CCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCCCCEEEEEe---
Confidence 0000 00111122333333332211 2468889988754322 22221 122334443 676655542
Q ss_pred ccCCCCcEEEEEEcc
Q 040165 259 CVDKTTDFELWVMKQ 273 (358)
Q Consensus 259 ~~~~~~~~~vW~l~~ 273 (358)
....+.||.+.+
T Consensus 304 ---~D~~v~iWd~~~ 315 (318)
T 4ggc_A 304 ---ADETLRLWRCFE 315 (318)
T ss_dssp ---TTTEEEEECCSC
T ss_pred ---cCCeEEEEECCC
Confidence 346899998865
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=45.48 E-value=1.3e+02 Score=24.88 Aligned_cols=192 Identities=7% Similarity=-0.027 Sum_probs=91.0
Q ss_pred Eeec-ceEEEEEeCCceEEEEcccccceecc-CCCCCCCCCCceEEEeEeCCCCCeEEEEEEcc--------------ce
Q 040165 100 GSCN-GLVCMALHGCKDFFIYNPSTRAHKKL-PDPDISLGSPYLYGFGYDSSTDDYKVLAVSCL--------------RV 163 (358)
Q Consensus 100 ~s~~-Gll~~~~~~~~~~~V~NP~T~~~~~l-P~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~--------------~~ 163 (358)
-+.+ |-+.+. .....++++|+. ++...+ ..............+.+|+.. ..-+... .. ..
T Consensus 78 ~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~-~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAP-AGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEEC-BCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEec-CcccccccccccccCCCC
Confidence 3344 766555 344478899998 776655 322111111113345666653 2222111 11 13
Q ss_pred EEEEEEcCCCceEecccccccccccccCCCCceE--E----ECc-eEEEEeecCCCCCCCcEEEEEECC-CCeeEE----
Q 040165 164 LLKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGC--L----FNG-ALHWLVSGFHFGSQDPVIIAFDLA-EEKFCR---- 231 (358)
Q Consensus 164 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v--~----~~G-~lywl~~~~~~~~~~~~i~~fD~~-~~~~~~---- 231 (358)
.+..|+.. ++.+..... . ....++ . -+| .+|+..... ..|..||+. ++++..
T Consensus 154 ~l~~~~~~-g~~~~~~~~----~-----~~~~~i~~~~~~d~dg~~l~v~~~~~------~~i~~~~~~~~g~~~~~~~~ 217 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVDTA----F-----QFPNGIAVRHMNDGRPYQLIVAETPT------KKLWSYDIKGPAKIENKKVW 217 (314)
T ss_dssp EEEEECTT-SCEEEEEEE----E-----SSEEEEEEEECTTSCEEEEEEEETTT------TEEEEEEEEETTEEEEEEEE
T ss_pred eEEEECCC-CCEEEeccC----C-----CCcceEEEecccCCCCCEEEEEECCC------CeEEEEECCCCCccccceEE
Confidence 55666554 444332210 1 011122 2 346 455554332 488999976 444321
Q ss_pred ecCCCC--CCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecC
Q 040165 232 VGEACH--PRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTD 308 (358)
Q Consensus 232 i~~P~~--~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 308 (358)
..++.. .....++.. +|+|++.. . ....+.+|..+. ++-. ..+.... .....+++ ..
T Consensus 218 ~~~~~~~~~~p~~i~~d~~G~l~v~~-----~-~~~~i~~~d~~~----g~~~--~~~~~~~-----~~~~~i~~---~~ 277 (314)
T 1pjx_A 218 GHIPGTHEGGADGMDFDEDNNLLVAN-----W-GSSHIEVFGPDG----GQPK--MRIRCPF-----EKPSNLHF---KP 277 (314)
T ss_dssp EECCCCSSCEEEEEEEBTTCCEEEEE-----E-TTTEEEEECTTC----BSCS--EEEECSS-----SCEEEEEE---CT
T ss_pred EECCCCCCCCCCceEECCCCCEEEEE-----c-CCCEEEEEcCCC----CcEe--EEEeCCC-----CCceeEEE---CC
Confidence 233321 212234443 78888876 2 234566665432 1111 2222211 11334444 56
Q ss_pred CCc-EEEEEcCcceEEEEECCCCe
Q 040165 309 GGD-EIIMINKWREFISCNLNERT 331 (358)
Q Consensus 309 ~g~-i~~~~~~~~~l~~yd~~t~~ 331 (358)
+|+ |++.......++.||+++..
T Consensus 278 dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 278 QTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp TSSEEEEEETTTTEEEEEECSSCB
T ss_pred CCCEEEEEeCCCCeEEEEeCCCCC
Confidence 677 77776553359999998654
No 212
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=45.03 E-value=1.6e+02 Score=25.89 Aligned_cols=190 Identities=9% Similarity=0.011 Sum_probs=91.5
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEe-cc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRD-VH 179 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~-~~ 179 (358)
+.+|-+++....+..+.|||..+++....-..+. .....+.+.|.. ++-+.+ .....+.+++..++.-.. ..
T Consensus 159 ~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~----~~V~~v~~~p~~-~~l~s~--s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 159 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD----HNVSSVSIMPNG-DHIVSA--SRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS----SCEEEEEECSSS-SEEEEE--ETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC----CCEEEEEEeCCC-CEEEEE--eCCCeEEEEECCCCcEEEEEe
Confidence 3445444443466778889887766543222111 124456666653 333322 356778899988765321 11
Q ss_pred cccccccccccCCCCceEE--ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCC------------------
Q 040165 180 YNLGVKLFYGTESPPKGCL--FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHP------------------ 238 (358)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~------------------ 238 (358)
. . . ..-..+. -+|.+...+... ..|-.+|+.+.+.... ......
T Consensus 232 ~------h--~-~~v~~~~~~~~g~~l~s~s~D------~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 232 G------H--R-EWVRMVRPNQDGTLIASCSND------QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp C------C--S-SCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred C------C--C-ccEEEEEECCCCCEEEEEcCC------CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence 1 0 0 0001111 245544444442 3677788776654321 111000
Q ss_pred --CceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEE
Q 040165 239 --RSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMI 316 (358)
Q Consensus 239 --~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 316 (358)
........+|.+.+.+. ....+.+|.+.. + ..+..+.- +......+++ ..+|..++..
T Consensus 297 ~~~~~~~~~~~g~~l~sgs------~D~~i~iwd~~~----~--~~~~~~~~-----h~~~v~~v~~---~~~g~~l~s~ 356 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGS------RDKTIKMWDVST----G--MCLMTLVG-----HDNWVRGVLF---HSGGKFILSC 356 (410)
T ss_dssp CSCC-------CCEEEEEE------TTSEEEEEETTT----T--EEEEEEEC-----CSSCEEEEEE---CSSSSCEEEE
T ss_pred ccccccccCCCCCEEEEEe------CCCeEEEEECCC----C--ceEEEEEC-----CCCcEEEEEE---cCCCCEEEEE
Confidence 00000111245544441 346899998864 1 12333322 2222445555 5567755554
Q ss_pred cCcceEEEEECCCCeE
Q 040165 317 NKWREFISCNLNERTL 332 (358)
Q Consensus 317 ~~~~~l~~yd~~t~~~ 332 (358)
...+.+..+|.++++.
T Consensus 357 s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKRC 372 (410)
T ss_dssp ETTTEEEEECCTTSCC
T ss_pred eCCCeEEEEECCCCce
Confidence 4444599999987653
No 213
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=44.92 E-value=1.3e+02 Score=24.75 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=73.1
Q ss_pred eecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccc
Q 040165 101 SCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHY 180 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~ 180 (358)
|.+|+|... .++.+.|||..|++...+-..... ......+.+.+.. ++-+.+ .....+.+++.++++-.....
T Consensus 34 S~~~~lAvg--~D~tV~iWd~~tg~~~~~~~~~~~--~~~V~~v~~~~~~-~~l~sg--s~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 34 SSGNVLAVA--LDNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEG-NYLAVG--TSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp CTTSEEEEE--ETTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTS-SEEEEE--ETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEE--eCCEEEEEECCCCCEEEEEEecCC--CCeEEEEEECCCC-CEEEEE--ECCCcEEEeecCCceeEEEec
Confidence 566766544 467899999999987665333211 1124456666653 344433 345678899988875321111
Q ss_pred ccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEE-ECCeeEEEeeccc
Q 040165 181 NLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGV-VGGCLSLNVCCSN 258 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~-~~g~L~lv~~~~~ 258 (358)
. ..........++.+-..+... ..+..++..+.......+..+. ....+.. .+|++.+.+
T Consensus 107 -------~-h~~~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---- 168 (318)
T 4ggc_A 107 -------S-HSARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG---- 168 (318)
T ss_dssp -------C-CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE----
T ss_pred -------C-ccceEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE----
Confidence 0 001112233444433333332 3555556555443332222111 1222222 356655554
Q ss_pred ccCCCCcEEEEEEcc
Q 040165 259 CVDKTTDFELWVMKQ 273 (358)
Q Consensus 259 ~~~~~~~~~vW~l~~ 273 (358)
.....+.+|.+..
T Consensus 169 --~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 169 --GNDNLVNVWPSAP 181 (318)
T ss_dssp --ETTSCEEEEESSC
T ss_pred --ecCcceeEEECCC
Confidence 1346799998865
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=43.74 E-value=2.3e+02 Score=27.38 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=86.3
Q ss_pred EEEeEeCCCCCeEEEEEEc---cceEEEEEEcCCC--c-eEecccccccccccccCCCCceEE-ECceEEEEeecCCCCC
Q 040165 142 YGFGYDSSTDDYKVLAVSC---LRVLLKVFSMKAF--S-WRDVHYNLGVKLFYGTESPPKGCL-FNGALHWLVSGFHFGS 214 (358)
Q Consensus 142 ~~~~~d~~~~~ykvv~~~~---~~~~~~vyss~t~--~-W~~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~ 214 (358)
....+++. ++|-++.... ....+.+.+..++ . |+.+... .. .....+. .++.+|+.+..+.
T Consensus 271 ~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~------~~--~~~~~~~~dg~~l~~~s~~~~--- 338 (741)
T 1yr2_A 271 HGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD------LK--AQWDFVDGVGDQLWFVSGDGA--- 338 (741)
T ss_dssp EEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS------SS--SCEEEEEEETTEEEEEECTTC---
T ss_pred EEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC------CC--ceEEEEeccCCEEEEEECCCC---
Confidence 34445443 4455554432 2457777787776 6 8776541 11 1112222 3456777765431
Q ss_pred CCcEEEEEECCC--CeeEEecCCC-CCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCc
Q 040165 215 QDPVIIAFDLAE--EKFCRVGEAC-HPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIM 291 (358)
Q Consensus 215 ~~~~i~~fD~~~--~~~~~i~~P~-~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~ 291 (358)
....|..+|+.+ +.|+.+- |. +.....+...++.|++... .....+||.++-.+ + ....+....
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~~~~lv~~~~------~dg~~~l~~~~~~g--~---~~~~l~~~~- 405 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIAGNRLFASYI------HDAKSQVLAFDLDG--K---PAGAVSLPG- 405 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEEBTEEEEEEE------ETTEEEEEEEETTS--C---EEEECBCSS-
T ss_pred CCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEECCEEEEEEE------ECCEEEEEEEeCCC--C---ceeeccCCC-
Confidence 135899999988 5786653 32 2111223445788777662 23567788887422 2 233444221
Q ss_pred cccCceeeEEEEeeecCCCc-EEEEEcCc---ceEEEEECCCCeEEEe
Q 040165 292 VRYHGSLVTLCTATGTDGGD-EIIMINKW---REFISCNLNERTLEEI 335 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~g~-i~~~~~~~---~~l~~yd~~t~~~~~v 335 (358)
......+++ ..+++ |++..... ..++.||+++++.+.+
T Consensus 406 ---~~~v~~~~~---s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 406 ---IGSASGLSG---RPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp ---SCEEEEEEC---CBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred ---CeEEEEeec---CCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 111233333 33455 66543321 2699999999987665
No 215
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=42.61 E-value=2.5e+02 Score=27.29 Aligned_cols=100 Identities=9% Similarity=0.164 Sum_probs=0.0
Q ss_pred EEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEE-
Q 040165 205 WLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERL- 283 (358)
Q Consensus 205 wl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~- 283 (358)
|++... .+..||..+++|.............+...+|.|.+.+ .. .++.++. ........
T Consensus 77 WigT~~-------Gl~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt---------~~-Gl~~~~~--~~~~~~~~~ 137 (758)
T 3ott_A 77 YMGTDN-------GILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGA---------LN-GLYTYQL--QSRKLTSFD 137 (758)
T ss_dssp EEEETT-------EEEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEE---------TT-EEEEEET--TTCCEEEEC
T ss_pred EEEeCC-------CeEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEc---------CC-cceeEeC--CCCeEEEec
Q ss_pred ---EEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 284 ---TKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 284 ---~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
..++... ...+.. ..+|.|++..... ++.||+++++++.+
T Consensus 138 ~~~~~l~~~~-------i~~i~~---d~~g~lWigt~~G--l~~~~~~~~~~~~~ 180 (758)
T 3ott_A 138 TRRNGLPNNT-------IYSIIR---TKDNQIYVGTYNG--LCRYIPSNGKFEGI 180 (758)
T ss_dssp HHHHCCSCSC-------EEEEEE---CTTCCEEEEETTE--EEEEETTTTEEEEE
T ss_pred cCCCCcCCCe-------EEEEEE---cCCCCEEEEeCCC--HhhCccCCCceEEe
No 216
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=42.20 E-value=2.3e+02 Score=26.96 Aligned_cols=184 Identities=10% Similarity=0.067 Sum_probs=86.1
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccC
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
.+..+.|||...+....+......+. .....+.+.+....-.++.. .....+.+++..+++-...-. . ..
T Consensus 492 ~D~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~-s~d~~v~vwd~~~~~~~~~~~-------~-h~ 561 (694)
T 3dm0_A 492 RDRTIKLWNTLGECKYTISEGGEGHR-DWVSCVRFSPNTLQPTIVSA-SWDKTVKVWNLSNCKLRSTLA-------G-HT 561 (694)
T ss_dssp TTSCEEEECTTSCEEEEECSSTTSCS-SCEEEEEECSCSSSCEEEEE-ETTSCEEEEETTTCCEEEEEC-------C-CS
T ss_pred CCCEEEEEECCCCcceeeccCCCCCC-CcEEEEEEeCCCCcceEEEE-eCCCeEEEEECCCCcEEEEEc-------C-CC
Confidence 45667788866554444332211111 12445566666543344443 345678888887764322111 0 00
Q ss_pred CCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEE
Q 040165 192 SPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 192 ~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~v 268 (358)
..-.++.+ +|.+...+... ..|..+|+.+.+-.. .+..+.....+.-. +|.+...+ . ...+.+
T Consensus 562 ~~v~~v~~spdg~~l~sg~~D------g~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~-----~--~~~i~i 627 (694)
T 3dm0_A 562 GYVSTVAVSPDGSLCASGGKD------GVVLLWDLAEGKKLY-SLEANSVIHALCFSPNRYWLCAA-----T--EHGIKI 627 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETT------SBCEEEETTTTEEEE-CCBCSSCEEEEEECSSSSEEEEE-----E--TTEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEE-----c--CCCEEE
Confidence 11112222 45554444442 478889998775322 22211112233333 45444443 1 245899
Q ss_pred EEEccCCCCCceeEEEEeecCCc--------------cccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECC
Q 040165 269 WVMKQYGVHSSWERLTKIDNDIM--------------VRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLN 328 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~ 328 (358)
|.++.. ..+..+..... .........+++ ..+|+.++.....+.+..+|+.
T Consensus 628 wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 628 WDLESK------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW---SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTTT------EEEEEECCCCC----------------CCCCEEEEEE---CTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCC------CChhhhccccccccccccccccccCCceeEEeeeEEE---cCCCCEEEEEcCCCeEEEEecc
Confidence 987641 12222221100 000011334555 6677766665544458888875
No 217
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=41.65 E-value=1.7e+02 Score=25.12 Aligned_cols=177 Identities=10% Similarity=0.036 Sum_probs=87.8
Q ss_pred eCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEeccccccccccccc
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGT 190 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~ 190 (358)
..+..+.+||..+++....-..+. .....+.+.+..+.-.++.. .....+.+++.++++-...-. . .
T Consensus 173 s~D~~v~lwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~g~~l~sg-s~Dg~v~~wd~~~~~~~~~~~-----~---h 239 (354)
T 2pbi_B 173 SGDGTCALWDVESGQLLQSFHGHG----ADVLCLDLAPSETGNTFVSG-GCDKKAMVWDMRSGQCVQAFE-----T---H 239 (354)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCS----SCEEEEEECCCSSCCEEEEE-ETTSCEEEEETTTCCEEEEEC-----C---C
T ss_pred eCCCcEEEEeCCCCeEEEEEcCCC----CCeEEEEEEeCCCCCEEEEE-eCCCeEEEEECCCCcEEEEec-----C---C
Confidence 467788999998877543221111 11334455554332233333 345678899988875432211 0 0
Q ss_pred CCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCC-CceEEEE-ECCeeEEEeecccccCCCCc
Q 040165 191 ESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHP-RSVSLGV-VGGCLSLNVCCSNCVDKTTD 265 (358)
Q Consensus 191 ~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~-~~~~l~~-~~g~L~lv~~~~~~~~~~~~ 265 (358)
...-.++.+ +|.....+... ..|-.+|+.+.+-..+ ...... ....+.- .+|++.+++. ....
T Consensus 240 ~~~v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~------~d~~ 307 (354)
T 2pbi_B 240 ESDVNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY------NDYT 307 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE------TTSC
T ss_pred CCCeEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE------CCCc
Confidence 011112222 45544444443 4788899987654322 222111 1122332 2677766662 3468
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEE
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCN 326 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd 326 (358)
+.+|.+... ..+..+. ++......+++ ..+|+.++.....+.+..+|
T Consensus 308 i~vwd~~~~------~~~~~l~-----~h~~~v~~l~~---spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 308 INVWDVLKG------SRVSILF-----GHENRVSTLRV---SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTTC------SEEEEEC-----CCSSCEEEEEE---CTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCC------ceEEEEE-----CCCCcEEEEEE---CCCCCEEEEEcCCCCEEecC
Confidence 999987541 1233322 22233555666 66777555444333465553
No 218
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=41.54 E-value=1.7e+02 Score=25.07 Aligned_cols=125 Identities=13% Similarity=-0.042 Sum_probs=60.9
Q ss_pred CceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEcc-c----eEEEEEEcCCCceEecccccccccc
Q 040165 113 CKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCL-R----VLLKVFSMKAFSWRDVHYNLGVKLF 187 (358)
Q Consensus 113 ~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~-~----~~~~vyss~t~~W~~~~~~~~~~~~ 187 (358)
...++++|..+++...+..... ....+.+.|..+.. ++..... . ..+.+++..++.++.+... .+
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~~~-----~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----~~ 236 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQDTA-----WLGHPIYRPFDDST-VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH----AE 236 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEESS-----CEEEEEEETTEEEE-EEEEECSCSSSCSCCCEEEETTSCCCEESSCC----CT
T ss_pred cceEEEEECCCCcEEeeccCCc-----ccccceECCCCCCE-EEEEecCCCCCCCceEEEEECCCCceeEeecc----CC
Confidence 3468888988888766653221 13334555522222 2222211 1 4677777777766655431 00
Q ss_pred cccCCCCceE-EECce-EEEEeecCCCCCCCcEEEEEECCCCeeEEe-cCCCCCCceEEEEE-CCeeEEEe
Q 040165 188 YGTESPPKGC-LFNGA-LHWLVSGFHFGSQDPVIIAFDLAEEKFCRV-GEACHPRSVSLGVV-GGCLSLNV 254 (358)
Q Consensus 188 ~~~~~~~~~v-~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~-~g~L~lv~ 254 (358)
. . ...... .-+|. |++....... ....|..+|+.+++...+ ..|.. . ..... +|+++++.
T Consensus 237 ~-~-~~~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 237 G-E-SCTHEFWIPDGSAMAYVSYFKGQ--TDRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGSLMVGD 300 (396)
T ss_dssp T-E-EEEEEEECTTSSCEEEEEEETTT--CCEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSSEEEEE
T ss_pred C-c-cccceEECCCCCEEEEEecCCCC--ccceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCceEEEe
Confidence 0 0 000011 12564 5666544221 113489999988776655 34421 1 12223 78866554
No 219
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=41.47 E-value=1.6e+02 Score=24.74 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=41.6
Q ss_pred CeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEEC
Q 040165 248 GCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNL 327 (358)
Q Consensus 248 g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~ 327 (358)
|.+.+.+. ....+.+|.++.. .......+... ......+++ ..+|+.++.....+.+..+|+
T Consensus 54 g~~l~~~~------~dg~i~iw~~~~~----~~~~~~~~~~h-----~~~v~~~~~---~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 54 GNFLIAGS------WANDVRCWEVQDS----GQTIPKAQQMH-----TGPVLDVCW---SDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SEEEEEEE------TTSEEEEEEECTT----SCEEEEEEEEC-----SSCEEEEEE---CTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEEEC------CCCcEEEEEcCCC----CceeEEEeccc-----cCCEEEEEE---CcCCCEEEEEcCCCcEEEEEc
Confidence 46666652 3468999999862 22222333221 122455565 556775555444445999999
Q ss_pred CCCeEEEe
Q 040165 328 NERTLEEI 335 (358)
Q Consensus 328 ~t~~~~~v 335 (358)
++++...+
T Consensus 116 ~~~~~~~~ 123 (368)
T 3mmy_A 116 SSNQAIQI 123 (368)
T ss_dssp TTTEEEEE
T ss_pred CCCCceee
Confidence 99987766
No 220
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=40.55 E-value=1.8e+02 Score=25.17 Aligned_cols=55 Identities=11% Similarity=0.290 Sum_probs=33.8
Q ss_pred EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 266 FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 266 ~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
-.||+.|. .....+.+++... ...+++ ..+|+.++.... +.+..||.+|++.+.+
T Consensus 286 ~~v~viD~----~t~~~v~~i~~~~-------p~~ia~---spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 286 AEIWVMDT----KTKQRVARIPGRD-------ALSMTI---DQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp SEEEEEET----TTTEEEEEEECTT-------CCEEEE---ETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred ceEEEEEC----CCCcEEEEEecCC-------eeEEEE---CCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 35555554 3445777887643 344555 567774444444 4599999999944444
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=40.14 E-value=1.9e+02 Score=25.42 Aligned_cols=49 Identities=8% Similarity=-0.085 Sum_probs=32.4
Q ss_pred CceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEc-CcceEEEEECCCCeEEEe
Q 040165 278 SSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMIN-KWREFISCNLNERTLEEI 335 (358)
Q Consensus 278 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~-~~~~l~~yd~~t~~~~~v 335 (358)
.....+.+|+.... ...+++ ..+|+ +++... ..+.+.++|++|.+..+-
T Consensus 302 ~t~~vv~~i~vg~~------p~gi~~---s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 302 SVGQTSGPISNGHD------SDAIIA---AQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp SSCCEEECCEEEEE------ECEEEE---CCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred CCCeEEEEEECCCC------cceEEE---CCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 34567777775431 344455 55676 777776 455699999999987654
No 222
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=39.91 E-value=13 Score=21.78 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=12.5
Q ss_pred CCChHHHHHHHHhccCCc
Q 040165 2 WSIPKDILEAEILCRLPI 19 (358)
Q Consensus 2 ~~LP~dll~~~IL~rLp~ 19 (358)
..||.|+.+ |||+.-..
T Consensus 22 ~~LP~dIQ~-Ells~~~~ 38 (48)
T 2kwv_A 22 KQLPADIQE-EILSGKSR 38 (48)
T ss_dssp TTSCHHHHH-HHTTCCCS
T ss_pred HHCcHHHHH-HHHhcchH
Confidence 368888888 88876543
No 223
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=39.64 E-value=2.1e+02 Score=25.67 Aligned_cols=206 Identities=7% Similarity=-0.092 Sum_probs=101.2
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-c--cceEEEEEEcCCCceEec
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-C--LRVLLKVFSMKAFSWRDV 178 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~--~~~~~~vyss~t~~W~~~ 178 (358)
.+|.|.+.... ..+.++|+.+++...+.... ....++.+|+..+ +-.+.-. . ....+.+++. .+.|...
T Consensus 148 ~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~-----~~P~~ia~d~~G~-~lyvad~~~~~~~~~v~~~~~-~g~~~~~ 219 (430)
T 3tc9_A 148 NHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGL-----SKVRTICWTHEAD-SMIITNDQNNNDRPNNYILTR-ESGFKVI 219 (430)
T ss_dssp EEEEEEEEEBT-EEEEEEETTTTEEEEEECCC-----SCEEEEEECTTSS-EEEEEECCSCTTSEEEEEEEG-GGTSCSE
T ss_pred CCCeEEEEeCC-CcEEEEECCCCEEEEEecCC-----CCcceEEEeCCCC-EEEEEeCCCCcccceEEEEeC-CCceeee
Confidence 46777665223 77888999887766654311 1245677777654 2222211 0 1123444443 3334311
Q ss_pred ccccccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE-CCe-eEE
Q 040165 179 HYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV-GGC-LSL 252 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~-~g~-L~l 252 (358)
.. ++. . ....++.+ +|.||+..... ..|..||+.+..... ...+....-..++.. +|+ |++
T Consensus 220 ~~-----l~~-~-~~p~giavdp~~g~lyv~d~~~------~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 220 TE-----LTK-G-QNCNGAETHPINGELYFNSWNA------GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EE-----EEE-C-SSCCCEEECTTTCCEEEEETTT------TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred ee-----ecc-C-CCceEEEEeCCCCEEEEEECCC------CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 11 111 1 11233333 68999887654 589999999876633 344321112344543 666 777
Q ss_pred EeecccccCCCCcEEEEEEccCCCCCceeEEEEee-c---CCcc-c---cCceeeEE-EEeeec-------CCCcEEEEE
Q 040165 253 NVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKID-N---DIMV-R---YHGSLVTL-CTATGT-------DGGDEIIMI 316 (358)
Q Consensus 253 v~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~-~---~~~~-~---~~~~~~~~-~~~~~~-------~~g~i~~~~ 316 (358)
+. .....+.++..+.. ...-.....+. . .... + ......|. +++.+. .+|+||+..
T Consensus 287 ~d------~~~~~I~~~~~d~~--~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD 358 (430)
T 3tc9_A 287 VV------VNQHYILRSDYDWK--TKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCD 358 (430)
T ss_dssp EE------TTTTEEEEEEEETT--TTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEE
T ss_pred EE------CCCCEEEEEeCCcc--cccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEE
Confidence 65 23445655555431 11111111111 0 0000 0 01123454 332211 346799888
Q ss_pred cCcceEEEEECCCCeEEEeec
Q 040165 317 NKWREFISCNLNERTLEEIYR 337 (358)
Q Consensus 317 ~~~~~l~~yd~~t~~~~~v~~ 337 (358)
....++..+|+ ++++..+.+
T Consensus 359 ~~n~~I~~i~~-~G~v~~~~g 378 (430)
T 3tc9_A 359 RENHCIRILTP-QGRVTTFAG 378 (430)
T ss_dssp GGGTEEEEECT-TSEEEEEEE
T ss_pred CCCcEEEEECC-CCcEEEEEe
Confidence 76667999995 466766643
No 224
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.64 E-value=1.9e+02 Score=24.96 Aligned_cols=187 Identities=11% Similarity=0.111 Sum_probs=96.1
Q ss_pred eCCceEEEEcccccceeccCCCCCCCCC-CceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc--eEecccccccccc
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISLGS-PYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS--WRDVHYNLGVKLF 187 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~-~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~--W~~~~~~~~~~~~ 187 (358)
..+..+.+||..+++....-.......+ .....+.+.+..+.+-+.+ .....+.+++.+... -+....
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg--s~D~~v~~wd~~~~~~~~~~~~~------- 247 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG--SCDTTVRLWDLRITSRAVRTYHG------- 247 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE--ETTSCEEEEETTTTCCCCEEECC-------
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE--ECCCeEEEEECCCCCcceEEECC-------
Confidence 4677889999998877653322111111 1144455555444443333 345678888876321 111111
Q ss_pred cccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCC-C--CC---CceEEEEE-CCeeEEEeecc
Q 040165 188 YGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEA-C--HP---RSVSLGVV-GGCLSLNVCCS 257 (358)
Q Consensus 188 ~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P-~--~~---~~~~l~~~-~g~L~lv~~~~ 257 (358)
....-.++.+ +|.....+... ..|-.+|+.+++-.. +... . .. ....++-. +|++.+.+
T Consensus 248 --h~~~v~~v~~~p~~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g--- 316 (380)
T 3iz6_a 248 --HEGDINSVKFFPDGQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG--- 316 (380)
T ss_dssp --CSSCCCEEEECTTSSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE---
T ss_pred --cCCCeEEEEEecCCCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE---
Confidence 0011122322 45544433332 478899999875533 3322 1 11 12234433 78877776
Q ss_pred cccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 258 NCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 258 ~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
. ....+.+|.+.. .+ .+..+... ..++......+++ ..+|..++.....+.+..+|+..+
T Consensus 317 --~-~dg~i~vwd~~~----~~--~~~~~~~~-~~~h~~~v~~l~~---s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 317 --Y-SNGDCYVWDTLL----AE--MVLNLGTL-QNSHEGRISCLGL---SSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp --C-TTSCEEEEETTT----CC--EEEEECCS-CSSCCCCCCEEEE---CSSSSEEEEECTTSCEEEEECCSS
T ss_pred --E-CCCCEEEEECCC----Cc--eEEEEecc-cCCCCCceEEEEE---CCCCCEEEEeeCCCCEEEEecCCC
Confidence 2 356899998754 11 22333211 0122233556666 667876666654445888888765
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=38.39 E-value=1.7e+02 Score=24.99 Aligned_cols=122 Identities=9% Similarity=0.042 Sum_probs=60.4
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCC------CC--CceEEEEE-CCeeEEEeecccccCCCCcEEEEE
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEAC------HP--RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWV 270 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~------~~--~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~ 270 (358)
+|.+|.-....... ...|..+| +.+ ..++|. .. .-..++.. +|+|+++..... ......+.+|.
T Consensus 27 ~g~~~v~~~~~~~~--~~~l~~~~--~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~-~~~~~~i~~~d 99 (343)
T 2qe8_A 27 DGRLFLSLHQFYQP--EMQVAELT--QDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ-SKSVPKLVAWD 99 (343)
T ss_dssp TSCEEEEECGGGCC--SCSEEEEE--TTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH-HTSCCEEEEEE
T ss_pred CCCEEEEeCCCCCC--ceEEEEEC--CCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC-cCCCCeEEEEE
Confidence 68887664321111 03677777 444 335551 11 22344444 689988872100 00134566665
Q ss_pred EccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEc---CcceEEEEECCCCeEEEe
Q 040165 271 MKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMIN---KWREFISCNLNERTLEEI 335 (358)
Q Consensus 271 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~---~~~~l~~yd~~t~~~~~v 335 (358)
++. ++-.+...++.... .......-+++ +.++|.+|+... ....++.||+++++..++
T Consensus 100 ~~t----g~~~~~~~~~~~~~-~~~~~~~~v~v--d~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 100 TLN----NQLSRVIYLPPPIT-LSNSFVNDLAV--DLIHNFVYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp TTT----TEEEEEEECCTTTS-CTTCCCCEEEE--ETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred CCC----CeEEEEEECChhhc-ccccccceEEE--ecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 543 22223333321111 11112344555 334566888765 444699999998876665
No 226
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=37.98 E-value=1.8e+02 Score=24.49 Aligned_cols=196 Identities=9% Similarity=-0.002 Sum_probs=85.8
Q ss_pred eecceEEEEEeCCceEEEEcccc-cc-eeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEec
Q 040165 101 SCNGLVCMALHGCKDFFIYNPST-RA-HKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDV 178 (358)
Q Consensus 101 s~~Gll~~~~~~~~~~~V~NP~T-~~-~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~ 178 (358)
+-+|-.+.....+..+.+||..+ ++ ...+-.... + ......+.+.|.. .+ ++.. .....+.+++..++.|+.+
T Consensus 116 sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h-~~~v~~v~~~p~~-~~-l~s~-s~D~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-H-SQDVKHVIWHPSE-AL-LASS-SYDDTVRIWKDYDDDWECV 190 (330)
T ss_dssp CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-C-SSCEEEEEECSSS-SE-EEEE-ETTSCEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-C-CCceEEEEECCCC-CE-EEEE-cCCCeEEEEECCCCCeeEE
Confidence 34565555434667788888732 21 111111110 0 1114445666643 22 2222 3456788888877777655
Q ss_pred ccccccccccccCCCCceEEECc---eEEEEeecCCCCCCCcEEEEEECCCC------eeEEe-cCCC-CC-CceEEEEE
Q 040165 179 HYNLGVKLFYGTESPPKGCLFNG---ALHWLVSGFHFGSQDPVIIAFDLAEE------KFCRV-GEAC-HP-RSVSLGVV 246 (358)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~G---~lywl~~~~~~~~~~~~i~~fD~~~~------~~~~i-~~P~-~~-~~~~l~~~ 246 (358)
.. +.... ..-.++.++. ..+...+..+ ..|-.+|+.++ .|..+ .++. +. ....+.-.
T Consensus 191 ~~-----~~~h~-~~v~~~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 259 (330)
T 2hes_X 191 AV-----LNGHE-GTVWSSDFDKTEGVFRLCSGSDD-----STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259 (330)
T ss_dssp EE-----ECCCS-SCEEEEEECCSSSSCEEEEEETT-----SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC
T ss_pred EE-----ccCCC-CcEEEEEecCCCCeeEEEEEeCC-----CeEEEEEecCCCccccceeEEeeecccccccceEEEEEc
Confidence 43 21100 0011112211 1222222221 35666665432 34333 2332 22 22333333
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCc-eeeEEEEeeecC--CCcEEEEEcCcceEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHG-SLVTLCTATGTD--GGDEIIMINKWREFI 323 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~-~~~~~~~~~~~~--~g~i~~~~~~~~~l~ 323 (358)
.+.+.+.++ ....+.+|..+. +.|......... +.. ....+++ .. ++.+++.....+.+.
T Consensus 260 ~~~~l~s~~------~dg~v~iw~~~~----~~~~~~~~~~~~----h~~~~v~~v~~---~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 260 FNGLIASVG------ADGVLAVYEEVD----GEWKVFAKRALC----HGVYEINVVKW---LELNGKTILATGGDDGIVN 322 (330)
T ss_dssp TTSCEEEEE------TTSCEEEEEEET----TEEEEEEEESCT----TTTSCEEEEEE---C-----CCEEEEETTSEEE
T ss_pred CCCEEEEEe------CCCEEEEEEcCC----CceEEEeccccc----cccceEEEEEE---ecCCCceEEEEecCCCcEE
Confidence 444433331 346899999875 567665443221 111 1344444 33 455565544444588
Q ss_pred EEECCC
Q 040165 324 SCNLNE 329 (358)
Q Consensus 324 ~yd~~t 329 (358)
.+|+++
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 888765
No 227
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=37.28 E-value=1.8e+02 Score=24.30 Aligned_cols=201 Identities=7% Similarity=-0.055 Sum_probs=91.3
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccc
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYN 181 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~ 181 (358)
.+|-.++.......+.+||..+++...+..... ....+.+.+..+.-.++.. .....+.+|+.++++-...-.
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~- 168 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA-----PVKTIHWIKAPNYSCVMTG-SWDKTLKFWDTRSSNPMMVLQ- 168 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-----CEEEEEEEECSSCEEEEEE-ETTSEEEEECSSCSSCSEEEE-
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCceeeccccC-----ceEEEEEEeCCCCCEEEEc-cCCCcEEEEECCCCcEEEEEe-
Confidence 345443332466778889988888766433211 1334444322222223332 345678888887764211100
Q ss_pred cccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCee--EEecCCCCCCceEEEE-ECCe----eEEEe
Q 040165 182 LGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKF--CRVGEACHPRSVSLGV-VGGC----LSLNV 254 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~--~~i~~P~~~~~~~l~~-~~g~----L~lv~ 254 (358)
.+ ....++...+.....+... ..+..||+.+..- ..+..+.......+.. .++. ..+++
T Consensus 169 ----~~----~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 169 ----LP----ERCYCADVIYPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp ----CS----SCEEEEEEETTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred ----cC----CCceEEEecCCeeEEEeCC------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 00 1111222233333333332 4788888876543 3333332111111111 1221 12222
Q ss_pred ecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCc-------cccCceeeEEEEeeecCCCcEEEEEcCcceEEEEEC
Q 040165 255 CCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIM-------VRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNL 327 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~ 327 (358)
.....+.+|.++... .-.....+..... .........+++ ..+|+.++.....+.+..||+
T Consensus 235 ------~~dg~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 235 ------SIEGRVAIHYINPPN---PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF---HPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp ------ETTSEEEEEESSCSC---HHHHSEEEECSEEC----CCCEEECCEEEEEE---CTTTCCEEEEETTSCEEEEET
T ss_pred ------cCCCcEEEEecCCCC---ccccceeeeeeecccccccccccccceEEEEE---ecCCCEEEEEccCCeEEEEEC
Confidence 135689999987531 1011111211110 000011334445 556665554443335999999
Q ss_pred CCCeEEEe
Q 040165 328 NERTLEEI 335 (358)
Q Consensus 328 ~t~~~~~v 335 (358)
++++....
T Consensus 303 ~~~~~~~~ 310 (368)
T 3mmy_A 303 DARTKLKT 310 (368)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEE
Confidence 98866444
No 228
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=36.70 E-value=2.7e+02 Score=26.13 Aligned_cols=215 Identities=9% Similarity=0.037 Sum_probs=103.0
Q ss_pred cce-EEEEEeCCceEEEEccc--c-cceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-------ccceEEEEEEcC
Q 040165 103 NGL-VCMALHGCKDFFIYNPS--T-RAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-------CLRVLLKVFSMK 171 (358)
Q Consensus 103 ~Gl-l~~~~~~~~~~~V~NP~--T-~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-------~~~~~~~vyss~ 171 (358)
+.. |.+......+++++|.- + ++...|...+..........+.++|..+....+... .....+.+++..
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 444 55552345678999887 4 666666553211011123456677765432222211 111567777877
Q ss_pred C------CceEecc-cccccccccccCCCCceEEECce-EEEEeecCCCC-CCCcEEEEEECC-CC---eeEEecCCCCC
Q 040165 172 A------FSWRDVH-YNLGVKLFYGTESPPKGCLFNGA-LHWLVSGFHFG-SQDPVIIAFDLA-EE---KFCRVGEACHP 238 (358)
Q Consensus 172 t------~~W~~~~-~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~-~~~~~i~~fD~~-~~---~~~~i~~P~~~ 238 (358)
+ +.-+.+. .. +.. ...-...-||. |++........ .....|..+|+. ++ ....+......
T Consensus 170 ~~~~~~~~~~~~l~~~~-----~~~--~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 170 GSAAADRSAVRELSDDA-----HRF--VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp STTTTCGGGSEESSCSC-----SSE--ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred CCccccCCceeEEEecC-----CCc--ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 7 6655544 21 100 01112233564 66665443110 012478999998 56 33333111111
Q ss_pred CceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCc-cccCceeeEEEEeeecCCCcEEEEE
Q 040165 239 RSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIM-VRYHGSLVTLCTATGTDGGDEIIMI 316 (358)
Q Consensus 239 ~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~~ 316 (358)
....+.-. ||+|+++. . ......||.++..+ +.+..+........ +........+++ ..+|.+++..
T Consensus 243 ~~~~~~~spdg~l~~~~-----~-~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~p~w~~~~~~~~~---~~~~~~~~~~ 311 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVAT-----D-RTGWWNLHRVDPAT--GAATQLCRREEEFAGPLWTPGMRWFAP---LANGLIAVVH 311 (662)
T ss_dssp CEEEEEECTTSCEEEEE-----C-TTSSCEEEEECTTT--CCEEESSCCSSBSSCCCCSTTCCSEEE---CTTSCEEEEE
T ss_pred eEcceEECCCCeEEEEE-----C-CCCCeEEEEEECCC--CceeecccccccccCccccccCceEeE---eCCCEEEEEE
Confidence 22333433 88866655 2 23456788887422 45543321111000 000000122444 4567776655
Q ss_pred cC-cceEEEEECCCCeEEEe
Q 040165 317 NK-WREFISCNLNERTLEEI 335 (358)
Q Consensus 317 ~~-~~~l~~yd~~t~~~~~v 335 (358)
.. ...++.+|+++++.+.+
T Consensus 312 ~~~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 312 GKGAAVLGILDPESGELVDA 331 (662)
T ss_dssp BSSSCEEEEEETTTTEEEEC
T ss_pred EcCccEEEEEECCCCcEEEe
Confidence 43 11588889998888777
No 229
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=36.10 E-value=50 Score=23.86 Aligned_cols=42 Identities=5% Similarity=0.091 Sum_probs=29.1
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS 159 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 159 (358)
.++++||.|++|.+.-..... ...+.+..|...+.|.|+...
T Consensus 12 ~V~~~d~~~~~W~p~~~g~~g---vs~V~~~~d~~~~~yrI~~~~ 53 (115)
T 1egx_A 12 TVMLYDDGNKRWLPAGTGPQA---FSRVQIYHNPTANSFRVVGRK 53 (115)
T ss_dssp ECBEECTTTSSCCBSSCSCCC---CEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCCceeECCCCCCC---ccEEEEEEeCCCCEEEEEEEE
Confidence 567889999998654331111 115778889988999998863
No 230
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=35.85 E-value=1.9e+02 Score=24.15 Aligned_cols=152 Identities=7% Similarity=-0.019 Sum_probs=70.7
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE---ccceEEEEEEcCCCc----e
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS---CLRVLLKVFSMKAFS----W 175 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~---~~~~~~~vyss~t~~----W 175 (358)
+|-.++.......+.+||..+++....-..+. ....+.+++.. .+-++... .....+.+|+..++. +
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-----PVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSS-----CEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCC-----CeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 45444433466788899988877655433211 14455666643 33333321 112577888776542 2
Q ss_pred EecccccccccccccC-CCCceEE--ECceEEEEeecCCCCCCCcEEEEEECCC-Cee-EEecCCCCCCceEEEEE-CCe
Q 040165 176 RDVHYNLGVKLFYGTE-SPPKGCL--FNGALHWLVSGFHFGSQDPVIIAFDLAE-EKF-CRVGEACHPRSVSLGVV-GGC 249 (358)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~-~~~-~~i~~P~~~~~~~l~~~-~g~ 249 (358)
..........+..... ..-.++. -+|.....+... ..|..||+.+ .+. ..+..... ....+.-. +|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 231 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLT 231 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSS
T ss_pred cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCC
Confidence 2221100000000000 0111122 245544444442 4899999987 332 22222211 12233333 666
Q ss_pred eEEEeecccccCCCCcEEEEEEcc
Q 040165 250 LSLNVCCSNCVDKTTDFELWVMKQ 273 (358)
Q Consensus 250 L~lv~~~~~~~~~~~~~~vW~l~~ 273 (358)
+.+++. ....+.+|.++.
T Consensus 232 ~l~~~~------~d~~i~v~d~~~ 249 (369)
T 3zwl_B 232 YFITSS------RDTNSFLVDVST 249 (369)
T ss_dssp EEEEEE------TTSEEEEEETTT
T ss_pred EEEEec------CCceEEEEECCC
Confidence 655552 346799998765
No 231
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=33.54 E-value=1.9e+02 Score=23.48 Aligned_cols=189 Identities=9% Similarity=0.010 Sum_probs=87.9
Q ss_pred cceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC-ceEecccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF-SWRDVHYN 181 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~-~W~~~~~~ 181 (358)
+++++.. ...+.+.|||..+++....-.... .....+.+++.. .+-+++ .....+.+++.... ..+.+..
T Consensus 29 ~~~l~s~-~~dg~v~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~-~~l~~~--~~dg~i~~~~~~~~~~~~~~~~- 99 (313)
T 3odt_A 29 DSKVASV-SRDGTVRLWSKDDQWLGTVVYTGQ----GFLNSVCYDSEK-ELLLFG--GKDTMINGVPLFATSGEDPLYT- 99 (313)
T ss_dssp TTEEEEE-ETTSEEEEEEESSSEEEEEEEECS----SCEEEEEEETTT-TEEEEE--ETTSCEEEEETTCCTTSCC-CE-
T ss_pred CCEEEEE-EcCCcEEEEECCCCEEEEEeecCC----ccEEEEEECCCC-CEEEEe--cCCCeEEEEEeeecCCCCcccc-
Confidence 3344333 466778889887766544322221 114456666643 333333 24456677766543 1221111
Q ss_pred cccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEE--EECCeeEEEeecccc
Q 040165 182 LGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLG--VVGGCLSLNVCCSNC 259 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~--~~~g~L~lv~~~~~~ 259 (358)
+.. ....-.++..+|.....+... ..|..+|..... ..+...... ...+. ..++.+.+++.
T Consensus 100 ----~~~-~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~-~~~~~~~~~-v~~~~~~~~~~~~l~~~~---- 162 (313)
T 3odt_A 100 ----LIG-HQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLV-YNLQAHNAS-VWDAKVVSFSENKFLTAS---- 162 (313)
T ss_dssp ----ECC-CSSCEEEEEEETTEEEEEETT------SEEEEEETTEEE-EEEECCSSC-EEEEEEEETTTTEEEEEE----
T ss_pred ----hhh-cccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEE-EecccCCCc-eeEEEEccCCCCEEEEEE----
Confidence 110 111123444566655555543 478888822222 222222111 12222 22566655552
Q ss_pred cCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 260 VDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 260 ~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
....+.+|... . ....+... .......+++ ..++.++....+. .+..||+++++....
T Consensus 163 --~d~~i~i~d~~------~--~~~~~~~~----~~~~i~~~~~---~~~~~~~~~~~dg-~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 163 --ADKTIKLWQND------K--VIKTFSGI----HNDVVRHLAV---VDDGHFISCSNDG-LIKLVDMHTGDVLRT 220 (313)
T ss_dssp --TTSCEEEEETT------E--EEEEECSS----CSSCEEEEEE---EETTEEEEEETTS-EEEEEETTTCCEEEE
T ss_pred --CCCCEEEEecC------c--eEEEEecc----CcccEEEEEE---cCCCeEEEccCCC-eEEEEECCchhhhhh
Confidence 34679999622 1 12222211 1111344444 4455544444444 588899887765443
No 232
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=32.65 E-value=2.4e+02 Score=24.19 Aligned_cols=145 Identities=5% Similarity=-0.087 Sum_probs=0.0
Q ss_pred EEEEEcCCCceEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECC-CCeeEEe-cCCCCCCc
Q 040165 165 LKVFSMKAFSWRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLA-EEKFCRV-GEACHPRS 240 (358)
Q Consensus 165 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~-~~~~~~i-~~P~~~~~ 240 (358)
...++..+++.+.+.. .+.........+.+ +|..-+.+..+ .|..||+. +++...+ ..+.....
T Consensus 18 ~~~~d~~~g~l~~~~~-----~~~~~~~~~~~~a~spdg~~l~~~~~~-------~v~~~~~~~~g~~~~~~~~~~~g~~ 85 (365)
T 1jof_A 18 TVQFDDEKLTCKLIKR-----TEIPQDEPISWMTFDHERKNIYGAAMK-------KWSSFAVKSPTEIVHEASHPIGGHP 85 (365)
T ss_dssp EEEEETTTTEEEEEEE-----EECCTTCCCSEEEECTTSSEEEEEEBT-------EEEEEEEEETTEEEEEEEEECCSSG
T ss_pred EEEEECCCCCEEEeeE-----EccCCCCCCcEEEECCCCCEEEEEccc-------eEEEEEECCCCCEEEeeEeecCCCC
Q ss_pred eEEEEE-CCe-eEEEeecccccC-------------CCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEee
Q 040165 241 VSLGVV-GGC-LSLNVCCSNCVD-------------KTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTAT 305 (358)
Q Consensus 241 ~~l~~~-~g~-L~lv~~~~~~~~-------------~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~ 305 (358)
..++.. +|+ |+++. .. ....+.+|.++..+.-..-.....-..... ...+++
T Consensus 86 ~~~~~spdg~~l~~~~-----~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~-- 152 (365)
T 1jof_A 86 RANDADTNTRAIFLLA-----AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG------IHGMVF-- 152 (365)
T ss_dssp GGGCTTSCCEEEEEEE-----CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC------EEEEEE--
T ss_pred ccEEECCCCCEEEEEE-----ecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc------ceEEEE--
Q ss_pred ecCCCc-EEEEEcCcceEEEEECC-CCeEEEe
Q 040165 306 GTDGGD-EIIMINKWREFISCNLN-ERTLEEI 335 (358)
Q Consensus 306 ~~~~g~-i~~~~~~~~~l~~yd~~-t~~~~~v 335 (358)
..+|+ +++...+.+.+..||++ +++.+.+
T Consensus 153 -spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 153 -DPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp -CTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred -CCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
No 233
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=32.38 E-value=2.4e+02 Score=24.12 Aligned_cols=198 Identities=9% Similarity=0.060 Sum_probs=90.6
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccc
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYN 181 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~ 181 (358)
.+|-.++....+..+.|||..+++....-..+.. ....+.+.|... + ++.. .....+.+|+...+.=......
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~----~v~~~~~sp~g~-~-lasg-~~d~~i~v~~~~~~~~~~~~~~ 146 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT----WVMACAYAPSGC-A-IACG-GLDNKCSVYPLTFDKNENMAAK 146 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS----CCCEEEECTTSS-E-EEEE-STTSEEEEEECCCCTTCCSGGG
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC----CEEEEEECCCCC-E-EEEe-eCCCCEEEEEEecccccccccc
Confidence 3454444434677788899877665432222211 133445556532 2 2222 3456778887654321000000
Q ss_pred cccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEE--E-CCeeEEEee
Q 040165 182 LGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGV--V-GGCLSLNVC 255 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~--~-~g~L~lv~~ 255 (358)
...+.. ....-.++.+ +|.. .+.... ...|-.+|+.+.+... +...... ...+.. . +|.+.+.+.
T Consensus 147 -~~~~~~-h~~~v~~~~~~~~~~~-l~t~s~-----D~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 147 -KKSVAM-HTNYLSACSFTNSDMQ-ILTASG-----DGTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp -CEEEEE-CSSCEEEEEECSSSSE-EEEEET-----TSEEEEEETTTCCEEEEEECCSSC-EEEEEECCCSSCCEEEEEE
T ss_pred -ceeeec-cCCcEEEEEEeCCCCE-EEEEeC-----CCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCCCCCEEEEEe
Confidence 000100 0000011111 2322 222222 2478889988776432 2221111 111221 1 455555552
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
....+.+|.++. ... +..+.. +......+++ ..+|+.++.....+.+..||+++++-..+
T Consensus 218 ------~Dg~v~~wd~~~----~~~--~~~~~~-----h~~~v~~v~~---~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 218 ------CDKKAMVWDMRS----GQC--VQAFET-----HESDVNSVRY---YPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp ------TTSCEEEEETTT----CCE--EEEECC-----CSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ------CCCeEEEEECCC----CcE--EEEecC-----CCCCeEEEEE---eCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 346899998875 222 222221 1222455555 55677555544434599999988754433
No 234
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=32.33 E-value=2.2e+02 Score=23.65 Aligned_cols=109 Identities=8% Similarity=0.006 Sum_probs=58.2
Q ss_pred CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCC-CCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCC
Q 040165 200 NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEA-CHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVH 277 (358)
Q Consensus 200 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P-~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~ 277 (358)
+|.||...... ..|..+|+..+.++.+++. ..+ .-.++.. +|+++++. .....+.+..++..+
T Consensus 38 ~~~L~aV~d~~------~~I~~ld~~g~v~~~i~l~g~~D-~EGIa~~~~g~~~vs~------E~~~~l~~~~v~~~~-- 102 (255)
T 3qqz_A 38 SNTLFSTINKP------AAIVEMTTNGDLIRTIPLDFVKD-LETIEYIGDNQFVISD------ERDYAIYVISLTPNS-- 102 (255)
T ss_dssp TTEEEEEEETT------EEEEEEETTCCEEEEEECSSCSS-EEEEEECSTTEEEEEE------TTTTEEEEEEECTTC--
T ss_pred CCEEEEEECCC------CeEEEEeCCCCEEEEEecCCCCC-hHHeEEeCCCEEEEEE------CCCCcEEEEEcCCCC--
Confidence 35677777663 6899999997777888776 322 2234444 55554544 233567677766532
Q ss_pred CceeE-EEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcc-eEEEEE
Q 040165 278 SSWER-LTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWR-EFISCN 326 (358)
Q Consensus 278 ~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~l~~yd 326 (358)
.-|.. ...++......... .-.+++ +...+.+++...... .++.|+
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g-~EGLA~--d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCG-FEGLAY--SRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSC-CEEEEE--ETTTTEEEEEEESSSEEEEEEE
T ss_pred eeeeeeeeccccccccccCC-cceEEE--eCCCCEEEEEECcCCceEEEEc
Confidence 23432 22223211111112 334444 354445777655433 577777
No 235
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=32.26 E-value=2.6e+02 Score=24.59 Aligned_cols=195 Identities=9% Similarity=0.086 Sum_probs=95.4
Q ss_pred eCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEE-cc--ceEEEEEEc--CCCceEecccccccc
Q 040165 111 HGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVS-CL--RVLLKVFSM--KAFSWRDVHYNLGVK 185 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~-~~--~~~~~vyss--~t~~W~~~~~~~~~~ 185 (358)
....-++|+|-.-+....+|... .+..-+.-++.-..+..-++.+. +. ..++.+|+. .++.++.+... .
T Consensus 47 ~k~~gL~Vydl~G~~l~~~~~g~---~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~---~ 120 (355)
T 3amr_A 47 NKKSGLVVYSLDGKMLHSYNTGK---LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP---D 120 (355)
T ss_dssp ETTTEEEEEETTSCEEEEECCSC---EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT---T
T ss_pred cCCCCEEEEcCCCcEEEEccCCC---cccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc---c
Confidence 34556778888444445565421 11111111221112222233333 44 678999955 67889888641 0
Q ss_pred cc--cccCCCCceEEE-----CceEEEEeecCCCCCCCcEEEEEEC---CCCee-----EEecCCCCCCceEEEE--ECC
Q 040165 186 LF--YGTESPPKGCLF-----NGALHWLVSGFHFGSQDPVIIAFDL---AEEKF-----CRVGEACHPRSVSLGV--VGG 248 (358)
Q Consensus 186 ~~--~~~~~~~~~v~~-----~G~lywl~~~~~~~~~~~~i~~fD~---~~~~~-----~~i~~P~~~~~~~l~~--~~g 248 (358)
+| ... ....+++. .|.+|.+....+ ..+..|++ .+.+. +.++++. . .-.++. -.|
T Consensus 121 ~pv~t~~-~~pyGlcly~~~~~g~~yafV~~k~-----G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q-~EgcvvDd~~g 192 (355)
T 3amr_A 121 HPIATAI-NEVYGFTLYHSQKTGKYYAMVTGKE-----GEFEQYELKADKNGYISGKKVRAFKMNS-Q-TEGMAADDEYG 192 (355)
T ss_dssp SCEECCC-SSCCCEEEEECTTTCCEEEEEECSS-----SEEEEEEEEECTTSCEEEEEEEEEECSS-C-EEEEEEETTTT
T ss_pred cCcCCCC-CCeeEEEEEecCCCCcEEEEEECCC-----CeEEEEEEEeCCCCcccceEEEEecCCC-C-cceEEEcCCCC
Confidence 12 111 12333333 467777766553 25666555 33322 2234442 1 112233 257
Q ss_pred eeEEEeecccccCCCCcEEEEEEccC-CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc--EEEEEcCcceEEEE
Q 040165 249 CLSLNVCCSNCVDKTTDFELWVMKQY-GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD--EIIMINKWREFISC 325 (358)
Q Consensus 249 ~L~lv~~~~~~~~~~~~~~vW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~--i~~~~~~~~~l~~y 325 (358)
.||+.. . . ..||.++-. .....-..+..+....+.. ...-+++.. ..+|+ |+....+.+.+.+|
T Consensus 193 ~Lyv~e-----E--d--~GIw~~da~p~~~~~~~~v~~~~~g~l~a---DvEGLai~~-~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 193 RLYIAE-----E--D--EAIWKFSAEPDGGSNGTVIDRADGRHLTR---DIEGLTIYY-AADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp EEEEEE-----T--T--TEEEEEECSTTSCSCCEEEEEBSSSSBCS---CEEEEEEEE-CGGGCEEEEEEEGGGTEEEEE
T ss_pred eEEEec-----c--c--ceEEEEeCCcCCCCCceEEEEecCCcccc---CcceEEEEe-cCCCCEEEEEEcCCCCEEEEE
Confidence 888776 2 1 448999742 1112456666665443321 123333321 22333 66666555579999
Q ss_pred ECC-CCeE
Q 040165 326 NLN-ERTL 332 (358)
Q Consensus 326 d~~-t~~~ 332 (358)
|.+ +++.
T Consensus 260 dr~~~~~~ 267 (355)
T 3amr_A 260 DRQGKNKY 267 (355)
T ss_dssp ESSTTCCE
T ss_pred ECCCCCcE
Confidence 997 5554
No 236
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=30.92 E-value=1.6e+02 Score=21.73 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=24.9
Q ss_pred ceEEEEcccccceeccCCCCCCCCCCceEEEeEe---C---CCCCeEEEEEE
Q 040165 114 KDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYD---S---STDDYKVLAVS 159 (358)
Q Consensus 114 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d---~---~~~~ykvv~~~ 159 (358)
-.+..+||.|+.|.++..... .....|+ + ..+.|+|+...
T Consensus 18 A~Vm~~Dd~tk~WlP~gg~gl------S~v~iy~~~~~~~~~~~~yRIvg~r 63 (130)
T 3syx_A 18 AVVMTRDDSSGGWLPLGGSGL------SSVTVFKVPHQEENGCADFFIRGER 63 (130)
T ss_dssp EEEEEECSSSSCEEESSSSCC------EEEEEEEEESSSTTSSEEEEEEEEE
T ss_pred EEeeeEcCCCCceEeCCCCCC------ceEEEEeccCCCCCCCcEEEEEEEe
Confidence 357789999999887754211 2223344 2 23579998764
No 237
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=30.78 E-value=2.3e+02 Score=23.55 Aligned_cols=110 Identities=7% Similarity=-0.058 Sum_probs=54.9
Q ss_pred ECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE----CCeeEEEeecccccCCCCcEEEEEEccC
Q 040165 199 FNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV----GGCLSLNVCCSNCVDKTTDFELWVMKQY 274 (358)
Q Consensus 199 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~----~g~L~lv~~~~~~~~~~~~~~vW~l~~~ 274 (358)
-+|.+...+... ..|..||+.+.+-..... .......+.-. +|...+++. ....+.+|.++..
T Consensus 178 ~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 178 QEERVVCAGYDN------GDIKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATS------LEGKFHVFDMRTQ 244 (357)
T ss_dssp -CCCEEEEEETT------SEEEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEE------STTEEEEEEEEEE
T ss_pred CCCCEEEEEccC------CeEEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEEC------CCCeEEEEeCcCC
Confidence 356655555543 489999999877533311 11112233333 456655552 3468999998753
Q ss_pred CCCCceeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCC
Q 040165 275 GVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNER 330 (358)
Q Consensus 275 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~ 330 (358)
......... .+. .+......+.+ ..+|. +++.....+.+..||+++.
T Consensus 245 ~~~~~~~~~-~~~-----~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 245 HPTKGFASV-SEK-----AHKSTVWQVRH---LPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp ETTTEEEEE-EEE-----CCSSCEEEEEE---ETTEEEEEEEEETTSEEEEEEEECC
T ss_pred Ccccceeee-ccC-----CCcCCEEEEEE---CCCCCcEEEEEeCCCcEEEeecCCC
Confidence 211111111 111 11122444555 44555 5555444445888887754
No 238
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=30.56 E-value=2.8e+02 Score=24.41 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=78.1
Q ss_pred CceEEEE--cccccceeccCCC--C--CCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEc---CCCceEe--cccc
Q 040165 113 CKDFFIY--NPSTRAHKKLPDP--D--ISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSM---KAFSWRD--VHYN 181 (358)
Q Consensus 113 ~~~~~V~--NP~T~~~~~lP~~--~--~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss---~t~~W~~--~~~~ 181 (358)
..++.|+ ||.+++...+..+ | ......+.+.+.-++.++.+.++.. .....++.|.. +.+.... +..
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~-~k~G~~~q~~l~~~~~g~~~~~lVR~- 175 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT-GKEGEFEQYELKADKNGYISGKKVRA- 175 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSCEEEEEEEE-
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE-CCCCeEEEEEEEeCCCCcccceEEEE-
Confidence 4667666 9999998888543 2 1112223344444888887666655 34456666665 4454422 222
Q ss_pred cccccccccCCC-CceEEE--CceEEEEeecCCCCCCCcEEEEEECCCC---eeEEe---cCC-CC-C-CceEEEEE-CC
Q 040165 182 LGVKLFYGTESP-PKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEE---KFCRV---GEA-CH-P-RSVSLGVV-GG 248 (358)
Q Consensus 182 ~~~~~~~~~~~~-~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~---~~~~i---~~P-~~-~-~~~~l~~~-~g 248 (358)
++.+ .. ..+|+- .|.||.--.. ..|..||.+-+ +-+.+ ..+ +. + ..+.|... +|
T Consensus 176 ----f~lg--sq~EgcvvDd~~g~Lyv~eEd-------~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g 242 (355)
T 3amr_A 176 ----FKMN--SQTEGMAADDEYGRLYIAEED-------EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG 242 (355)
T ss_dssp ----EECS--SCEEEEEEETTTTEEEEEETT-------TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG
T ss_pred ----ecCC--CCcceEEEcCCCCeEEEeccc-------ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC
Confidence 2211 12 334443 4788875444 47999996522 22333 333 22 2 33444322 33
Q ss_pred --eeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEee
Q 040165 249 --CLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKID 287 (358)
Q Consensus 249 --~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~ 287 (358)
.|++.+ + ....+.||..+. .+..+.++.
T Consensus 243 ~gyLivSs-----Q-G~~s~~Vydr~~-----~~~~vg~f~ 272 (355)
T 3amr_A 243 KGYLMASS-----Q-GNSSYAIYDRQG-----KNKYVADFR 272 (355)
T ss_dssp CEEEEEEE-----G-GGTEEEEEESST-----TCCEEEEEE
T ss_pred CEEEEEEc-----C-CCCEEEEEECCC-----CCcEEEEEE
Confidence 344444 2 346788887752 455665554
No 239
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=30.51 E-value=2.3e+02 Score=23.41 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=54.0
Q ss_pred cEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccC
Q 040165 217 PVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYH 295 (358)
Q Consensus 217 ~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~ 295 (358)
..|..+|+.+.+..............+... +|++.+.+. ....+.+|.+.. +..+..+....
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~Dg~i~iwd~~~------~~~~~~~~~~~----- 257 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG------KDGQAMLWDLNE------GKHLYTLDGGD----- 257 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTCEEEEEETTT------TEEEEEEECSS-----
T ss_pred CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe------CCCeEEEEEecc------CceeeeecCCc-----
Confidence 468888988876543322211112233333 677666652 346899998764 23444444322
Q ss_pred ceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEE
Q 040165 296 GSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEE 334 (358)
Q Consensus 296 ~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~ 334 (358)
....+++ ..++.++....+. .+..||++++....
T Consensus 258 -~v~~~~~---~~~~~~~~~~~d~-~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 258 -IINALCF---SPNRYWLCAATGP-SIKIWDLEGKIIVD 291 (340)
T ss_dssp -CEEEEEE---CSSSSEEEEEETT-EEEEEETTTTEEEE
T ss_pred -eEEeeec---CCCCceeeccCCC-EEEEEECCCCeEEE
Confidence 1444555 5556566555554 49999998876543
No 240
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=29.69 E-value=3.6e+02 Score=25.34 Aligned_cols=176 Identities=12% Similarity=0.016 Sum_probs=84.1
Q ss_pred eEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccc-cccccccccCCCCceE-EE-C-ceEEEEeecCCCCCCC
Q 040165 141 LYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYN-LGVKLFYGTESPPKGC-LF-N-GALHWLVSGFHFGSQD 216 (358)
Q Consensus 141 ~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~~~~v-~~-~-G~lywl~~~~~~~~~~ 216 (358)
...+++|+. ++|-+++- .....+.+++..+++= +... .+...|.. ..... .. + |.+|.....+ .
T Consensus 344 ~~d~~~~pd-gr~~~va~-~~sn~V~ViD~~t~kl--~~~i~vgg~~Php---g~g~~~~~p~~g~v~~t~~~g-----~ 411 (567)
T 1qks_A 344 LHDGGLDGS-HRYFITAA-NARNKLVVIDTKEGKL--VAIEDTGGQTPHP---GRGANFVHPTFGPVWATSHMG-----D 411 (567)
T ss_dssp EEEEEECTT-SCEEEEEE-GGGTEEEEEETTTTEE--EEEEECSSSSBCC---TTCEEEEETTTEEEEEEEBSS-----S
T ss_pred ccCceECCC-CCEEEEEe-CCCCeEEEEECCCCcE--EEEEeccCcCCCC---ccceeeECCCCCcEEEeCCCC-----C
Confidence 345678875 45555554 4667899999998852 2210 00002211 11222 22 2 4454333323 2
Q ss_pred cEEEEEECCCCe-----eEEe-cCCCCC-CceEEEEE-CCeeEEEeecccccC--CCCcEEEEEEccCCC---CCceeEE
Q 040165 217 PVIIAFDLAEEK-----FCRV-GEACHP-RSVSLGVV-GGCLSLNVCCSNCVD--KTTDFELWVMKQYGV---HSSWERL 283 (358)
Q Consensus 217 ~~i~~fD~~~~~-----~~~i-~~P~~~-~~~~l~~~-~g~L~lv~~~~~~~~--~~~~~~vW~l~~~~~---~~~W~~~ 283 (358)
..|..+|+.++. |..+ .++... ....+... +|+-..|...-+ .+ ...++.|+.+++.+. ... .
T Consensus 412 ~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~-~~~~~~~~v~v~d~~~~~~~g~~~~---~ 487 (567)
T 1qks_A 412 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-PEAEISGSVAVFDIKAMTGDGSDPE---F 487 (567)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-SSHHHHTCEEEEEGGGCCCSSSCCC---E
T ss_pred CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCC-CCcccCceEEEEECCcccccccCCC---c
Confidence 479999988744 7665 333211 12223332 554333431100 00 034777777665311 112 2
Q ss_pred EEeecCC---ccccCceeeEEEEeeecCCCc-EEEEEc----CcceEEEEECCCCeEEEe
Q 040165 284 TKIDNDI---MVRYHGSLVTLCTATGTDGGD-EIIMIN----KWREFISCNLNERTLEEI 335 (358)
Q Consensus 284 ~~i~~~~---~~~~~~~~~~~~~~~~~~~g~-i~~~~~----~~~~l~~yd~~t~~~~~v 335 (358)
..++... +........-+.+ ..+|+ +++... ..+.+.+||.+|.+..+.
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~---~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 488 KTLPIAEWAGITEGQPRVVQGEF---NKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp EEECHHHHHTCCSSCCEEEEEEE---CTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred EEeccccccccCCCCcceEeeeE---CCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 3333211 1111122333444 55666 777642 123699999999998766
No 241
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=28.23 E-value=2.5e+02 Score=24.44 Aligned_cols=71 Identities=8% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEc-cCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCC-cEEEEEcCcceEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMK-QYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGG-DEIIMINKWREFIS 324 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~-~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~l~~ 324 (358)
+|++.+.+ ....+.+|.++ . ..=.....+....+..+......+++ ..+| ++++.....+.+..
T Consensus 188 ~~~~l~s~-------~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 188 DYETYLSA-------DDLRINLWHLEIT----DRSFNIVDIKPANMEELTEVITAAEF---HPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp TSSEEEEE-------CSSEEEEEETTEE----EEEEEEEECCCSSGGGCCCCEEEEEE---CSSCTTEEEEEETTSCEEE
T ss_pred CCCEEEEe-------CCCeEEEEECCCC----CceeeeeecccccccccCcceEEEEE---CCCCCcEEEEEeCCCeEEE
Q ss_pred EECCCCe
Q 040165 325 CNLNERT 331 (358)
Q Consensus 325 yd~~t~~ 331 (358)
||+++++
T Consensus 254 wd~~~~~ 260 (447)
T 3dw8_B 254 CDMRASA 260 (447)
T ss_dssp EETTTCS
T ss_pred EECcCCc
No 242
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=27.85 E-value=23 Score=18.73 Aligned_cols=22 Identities=32% Similarity=0.683 Sum_probs=16.9
Q ss_pred EeecceEEEEEeCCceEEEEcccc
Q 040165 100 GSCNGLVCMALHGCKDFFIYNPST 123 (358)
Q Consensus 100 ~s~~Gll~~~~~~~~~~~V~NP~T 123 (358)
++|.||-|.. +...+-||-|.|
T Consensus 15 dcceglecwk--rrrsfevcvpkt 36 (37)
T 3s3x_D 15 DCCEGLECWK--RRRSFEVCVPKT 36 (37)
T ss_dssp CBCTTEEEEC--CSSSCCEEEECC
T ss_pred chhhhHHHHH--hccceeeecCCC
Confidence 6788999986 667777887765
No 243
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=27.82 E-value=5.1e+02 Score=26.58 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=41.8
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCce
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSW 175 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W 175 (358)
+.-+.+|-.+......+.+.|||..|++...--..+ ......+.+++.. ++-+.+ .....+.+++..+++-
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h----~~~v~~~~~s~~~-~~l~s~--~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH----EDEVLCCAFSSDD-SYIATC--SADKKVKIWDSATGKL 691 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTS-SEEEEE--ETTSEEEEEETTTCCE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC----CCCEEEEEEecCC-CEEEEE--eCCCeEEEEECCCCce
Confidence 334455655554356778999999998764322211 1124556666653 343333 3456799999988753
No 244
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=27.70 E-value=1.4e+02 Score=26.14 Aligned_cols=57 Identities=2% Similarity=-0.204 Sum_probs=34.0
Q ss_pred cceEEEEEEcCCCceEeccccccccccccc-----CCCCceEE-------ECceEEEEeecCCCCCCCcEEEEEECCCCe
Q 040165 161 LRVLLKVFSMKAFSWRDVHYNLGVKLFYGT-----ESPPKGCL-------FNGALHWLVSGFHFGSQDPVIIAFDLAEEK 228 (358)
Q Consensus 161 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~-----~~~~~~v~-------~~G~lywl~~~~~~~~~~~~i~~fD~~~~~ 228 (358)
....+..|+.++|.|+-... ++... .....+|. .+|.+|.-...+ .+.++|..+++
T Consensus 65 ~dG~l~a~~~~~G~~~~~~~-----~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g-------~l~ald~~tG~ 132 (339)
T 2be1_A 65 GDGNIYYFNAHQGLQKLPLS-----IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRT-------IMYTINMLNGE 132 (339)
T ss_dssp TTTEEEEEETTTEEEEEEEE-----HHHHHTTCSEEEECC----------CCEEEEECEEEE-------EEEEEETTTCC
T ss_pred CCCEEEEEECCCCcEEeeec-----cccceeccccccCCCceeecccccccCCEEEEEecCC-------EEEEEECCCCc
Confidence 34567777777776653222 12111 11234445 799999988885 89999998764
Q ss_pred e
Q 040165 229 F 229 (358)
Q Consensus 229 ~ 229 (358)
-
T Consensus 133 ~ 133 (339)
T 2be1_A 133 I 133 (339)
T ss_dssp E
T ss_pred E
Confidence 4
No 245
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=26.69 E-value=3e+02 Score=23.46 Aligned_cols=67 Identities=3% Similarity=0.079 Sum_probs=39.4
Q ss_pred CCeeEEEeecccccCCCCc-EEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTD-FELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISC 325 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~-~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~y 325 (358)
+|++.+.+. .... +.+|.++. ...+..+.... +......+++ ..+|+.++.....+.+..+
T Consensus 206 ~g~~l~s~s------~d~~~v~iwd~~~------~~~~~~~~~g~---h~~~v~~~~~---s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 206 KSDMVATCS------QDGTIIRVFKTED------GVLVREFRRGL---DRADVVDMKW---STDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp TSSEEEEEE------TTCSEEEEEETTT------CCEEEEEECTT---CCSCEEEEEE---CTTSCEEEEEETTCEEEEE
T ss_pred CCCEEEEEe------CCCCEEEEEECCC------CcEEEEEEcCC---CCCcEEEEEE---CCCCCEEEEEECCCEEEEE
Confidence 677666552 3456 99998764 23444444210 1122555666 6677766555444469999
Q ss_pred ECCCCe
Q 040165 326 NLNERT 331 (358)
Q Consensus 326 d~~t~~ 331 (358)
|+++..
T Consensus 268 ~~~~~~ 273 (355)
T 3vu4_A 268 EIFNDQ 273 (355)
T ss_dssp ESSCCS
T ss_pred EccCCC
Confidence 998664
No 246
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=26.33 E-value=3e+02 Score=23.38 Aligned_cols=192 Identities=9% Similarity=-0.008 Sum_probs=93.7
Q ss_pred cceEEEEEeCCceEEEEccccccee-ccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccc
Q 040165 103 NGLVCMALHGCKDFFIYNPSTRAHK-KLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYN 181 (358)
Q Consensus 103 ~Gll~~~~~~~~~~~V~NP~T~~~~-~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~ 181 (358)
+|.|.........+..+++.++... .+..... ....++.+|+..+...+.- .....+++++.....=+.+..
T Consensus 46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l----~~p~glavd~~~g~ly~~d--~~~~~I~~~~~dG~~~~~l~~- 118 (318)
T 3sov_A 46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL----LSPDGLACDWLGEKLYWTD--SETNRIEVSNLDGSLRKVLFW- 118 (318)
T ss_dssp GTEEEEEETTTTEEEEEETTSSSCCCEEEEECC----SCCCEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEC-
T ss_pred CCEEEEEECCCCcEEEEEccCCCceEEEEcCCC----CCccEEEEEcCCCeEEEEE--CCCCEEEEEECCCCcEEEEEe-
Confidence 4555555234556666666654211 1111000 0134567777655432221 334578888876543222211
Q ss_pred cccccccccCCCCceEEE---CceEEEEeecCCCCCCCcEEEEEECCCCeeEE-ecCCCCCCceEEEEE--CCeeEEEee
Q 040165 182 LGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCR-VGEACHPRSVSLGVV--GGCLSLNVC 255 (358)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~l~~~--~g~L~lv~~ 255 (358)
... ....++.+ +|.|||..... ...|..+|+....-.. +.-... .--.|+.. +|+||++.
T Consensus 119 ------~~~-~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~~l~-~Pnglavd~~~~~lY~aD- 184 (318)
T 3sov_A 119 ------QEL-DQPRAIALDPSSGFMYWTDWGE-----VPKIERAGMDGSSRFIIINSEIY-WPNGLTLDYEEQKLYWAD- 184 (318)
T ss_dssp ------SSC-SSEEEEEEEGGGTEEEEEECSS-----SCEEEEEETTSCSCEEEECSSCS-CEEEEEEETTTTEEEEEE-
T ss_pred ------CCC-CCccEEEEeCCCCEEEEEecCC-----CCEEEEEEcCCCCeEEEEECCCC-CccEEEEeccCCEEEEEE-
Confidence 001 11223333 58999987432 2589999987543222 221111 12245554 78888886
Q ss_pred cccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeE-EE
Q 040165 256 CSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTL-EE 334 (358)
Q Consensus 256 ~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~-~~ 334 (358)
. ....+....++. .. =..+. . ..+ ..|.++.+ .++.+|+.....+.+..+|..+++. +.
T Consensus 185 ----~-~~~~I~~~d~dG--~~--~~~~~--~-~~~------~~P~glav--~~~~lywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 185 ----A-KLNFIHKSNLDG--TN--RQAVV--K-GSL------PHPFALTL--FEDILYWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp ----T-TTTEEEEEETTS--CS--CEEEE--C-SCC------SCEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred ----C-CCCEEEEEcCCC--Cc--eEEEe--c-CCC------CCceEEEE--eCCEEEEEecCCCeEEEEECCCCCceEE
Confidence 2 334454444432 11 11111 1 111 34555522 2455887766656799999977654 44
Q ss_pred e
Q 040165 335 I 335 (358)
Q Consensus 335 v 335 (358)
+
T Consensus 245 i 245 (318)
T 3sov_A 245 I 245 (318)
T ss_dssp E
T ss_pred E
Confidence 4
No 247
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=26.22 E-value=3.3e+02 Score=23.87 Aligned_cols=194 Identities=8% Similarity=0.034 Sum_probs=90.8
Q ss_pred eCCceEEEEcccccce--ecc-CCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCc-eEeccccccccc
Q 040165 111 HGCKDFFIYNPSTRAH--KKL-PDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFS-WRDVHYNLGVKL 186 (358)
Q Consensus 111 ~~~~~~~V~NP~T~~~--~~l-P~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~ 186 (358)
...+.+.|+|..++.. ..+ +.............+.+.+..+.+-+.+ .....+.+|+.+++. .+.+.. +
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~--~~dg~i~i~d~~~~~~~~~~~~-----~ 273 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV--ADDQKLMIWDTRNNNTSKPSHT-----V 273 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE--ETTSEEEEEETTCSCSSSCSEE-----E
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE--eCCCeEEEEECCCCCCCcceeE-----e
Confidence 4567788888877321 111 1111111111245566777554443333 356789999998753 211111 1
Q ss_pred ccccCCCCceEEEC--ce-EEEEeecCCCCCCCcEEEEEECCCCe--eEEecCCCCCCceEEEEE-CC-eeEEEeecccc
Q 040165 187 FYGTESPPKGCLFN--GA-LHWLVSGFHFGSQDPVIIAFDLAEEK--FCRVGEACHPRSVSLGVV-GG-CLSLNVCCSNC 259 (358)
Q Consensus 187 ~~~~~~~~~~v~~~--G~-lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~~~l~~~-~g-~L~lv~~~~~~ 259 (358)
. .....-.++.++ |. ++..+... ..|..||+.+.. ...+... ......+.-. +| .+++.++
T Consensus 274 ~-~~~~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~l~s~~---- 341 (430)
T 2xyi_A 274 D-AHTAEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSG---- 341 (430)
T ss_dssp E-CCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTEEEEEE----
T ss_pred e-cCCCCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCEEEEEe----
Confidence 0 000111223332 43 45555443 479999998632 1122111 1112233333 45 3444442
Q ss_pred cCCCCcEEEEEEccCCCCCc--------eeEEEEeecCCccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCCC
Q 040165 260 VDKTTDFELWVMKQYGVHSS--------WERLTKIDNDIMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNER 330 (358)
Q Consensus 260 ~~~~~~~~vW~l~~~~~~~~--------W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t~ 330 (358)
....+.||.+...+.... -..+.... ++.....-+++ ..++. +++.....+.+..|++.++
T Consensus 342 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~---~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 342 --TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-----GHTAKISDFSW---NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp --TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-----CCSSCEEEEEE---CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred --CCCcEEEEeCCCCccccCccccccCCcceEEEcC-----CCCCCceEEEE---CCCCCCEEEEEECCCCEEEeEcccc
Confidence 346799999876321100 01222221 11222444555 55666 6665554445888888765
Q ss_pred eEE
Q 040165 331 TLE 333 (358)
Q Consensus 331 ~~~ 333 (358)
.+.
T Consensus 412 ~~~ 414 (430)
T 2xyi_A 412 VYN 414 (430)
T ss_dssp HHC
T ss_pred ccc
Confidence 543
No 248
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=25.82 E-value=5.8e+02 Score=26.52 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred CcEEEEEECCCCeeEEe-cCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCcccc
Q 040165 216 DPVIIAFDLAEEKFCRV-GEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRY 294 (358)
Q Consensus 216 ~~~i~~fD~~~~~~~~i-~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~ 294 (358)
...|..|++.+.+...+ ..+..+.-..|+..+|+|.+.. +..+.+|.+++. +- ++.......
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~i--------g~~l~vy~l~~~----~~-L~~~~~~~~---- 925 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASI--------NSTVRLYEWTTE----KE-LRTECNHYN---- 925 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEE--------TTEEEEEEECTT----SC-EEEEEEECC----
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEc--------CCEEEEEECCCC----ce-EEEEeeccc----
Confidence 46899999987777766 3344334567888999876655 368999999762 21 221111110
Q ss_pred CceeeEEEEeeecCCCcEEEEEcCcc--eEEEEECCCCeEEEee
Q 040165 295 HGSLVTLCTATGTDGGDEIIMINKWR--EFISCNLNERTLEEIY 336 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~g~i~~~~~~~~--~l~~yd~~t~~~~~v~ 336 (358)
. ..+..+ ...|+.+++.+-.+ .++.|+...+++..+.
T Consensus 926 -~-i~~~~l---~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 926 -N-IMALYL---KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp -C-SCEEEE---EEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred -c-EEEEEE---eccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 0 112222 12355444443222 6888999999999884
No 249
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=24.42 E-value=83 Score=23.42 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=20.7
Q ss_pred cEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 311 DEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 311 ~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
+|+...... .+|.||..+++|++. +++
T Consensus 30 ~Il~~a~~v-~vY~f~~~~~~W~K~-~iE 56 (134)
T 2lyd_A 30 EIVDSSSHV-AFYTFNSSQNEWEKT-DVE 56 (134)
T ss_dssp EEEEEEEEE-EEEEEETTTTEEEEE-EEE
T ss_pred HHHhhCCeE-EEEEecCCcCceeEc-CCc
Confidence 455554444 499999999999999 877
No 250
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=24.12 E-value=4.8e+02 Score=24.99 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=61.8
Q ss_pred ecceEEEEEeCCceEEEEcccccceeccCCCCCCCC-------CCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCC-
Q 040165 102 CNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLG-------SPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF- 173 (358)
Q Consensus 102 ~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~-------~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~- 173 (358)
.+|.|.+. .....++.+|+.||+.+---....... .....+..++. . +|+.. .....+..++..|+
T Consensus 76 ~~g~vyv~-~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~---~-~v~v~-~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 76 VDGIMYVS-ASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK---G-KVYVG-AWDGRLIALDAATGK 149 (677)
T ss_dssp ETTEEEEE-CGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET---T-EEEEE-CTTSEEEEEETTTCC
T ss_pred ECCEEEEE-CCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEEC---C-EEEEE-cCCCEEEEEECCCCC
Confidence 47777665 345678888998877543211111000 00001112221 1 33332 33456777888777
Q ss_pred -ceEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEe
Q 040165 174 -SWRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRV 232 (358)
Q Consensus 174 -~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i 232 (358)
.|+.-... ...........++..+|.+|.-....+. .....|.+||..++ .|+.-
T Consensus 150 ~~W~~~~~~---~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 150 EVWHQNTFE---GQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEEETTT---TCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred EEeeecCCc---CcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEec
Confidence 48764320 0111111235667789999887653211 11258999998765 56654
No 251
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=23.98 E-value=4.9e+02 Score=25.01 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=45.0
Q ss_pred eEEEEEEcCCC--ceEecccccccccccc--cCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCC--eeEEecC-C
Q 040165 163 VLLKVFSMKAF--SWRDVHYNLGVKLFYG--TESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEE--KFCRVGE-A 235 (358)
Q Consensus 163 ~~~~vyss~t~--~W~~~~~~~~~~~~~~--~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~-P 235 (358)
..+..++..|+ .|+.-........... .......++.+|.+|.-+.. ..+.++|..++ .|+.-.. .
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~d-------g~l~AlDa~TG~~~W~~~~~~~ 152 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD-------GRLEAIDAKTGQRAWSVDTRAD 152 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEECCSC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccC-------CEEEEEECCCCCEeeeecCcCC
Confidence 44666777776 5876432100000100 01124557789999987655 38999998765 5765432 2
Q ss_pred -CC--CCceEEEEECCeeEEEe
Q 040165 236 -CH--PRSVSLGVVGGCLSLNV 254 (358)
Q Consensus 236 -~~--~~~~~l~~~~g~L~lv~ 254 (358)
.. ......+..+|.+++..
T Consensus 153 ~~~~~~~~~sP~v~~g~v~vg~ 174 (689)
T 1yiq_A 153 HKRSYTITGAPRVVNGKVVIGN 174 (689)
T ss_dssp TTSCCBCCSCCEEETTEEEECC
T ss_pred CCCCccccCCcEEECCEEEEEe
Confidence 11 11112234578776654
No 252
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=23.38 E-value=3.8e+02 Score=23.50 Aligned_cols=156 Identities=11% Similarity=0.139 Sum_probs=71.3
Q ss_pred EEEeEeCCCCCeEEEEEEccceEEEEEEcCCC---ceEecccccccccccccCCCCceEEE---CceEEEEeecCCCCCC
Q 040165 142 YGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAF---SWRDVHYNLGVKLFYGTESPPKGCLF---NGALHWLVSGFHFGSQ 215 (358)
Q Consensus 142 ~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~---~W~~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~ 215 (358)
..+.+++....+-+.+ .....+.+|+..++ .+...... ... .....-..+.+ ++.+...+...
T Consensus 185 ~~l~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~---~~~-~h~~~v~~v~~~p~~~~~l~s~~~d----- 253 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSA--SDDHTICLWDINATPKEHRVIDAKN---IFT-GHTAVVEDVAWHLLHESLFGSVADD----- 253 (430)
T ss_dssp CCEEECTTSTTEEEEE--CTTSCEEEEETTSCCBGGGEEECSE---EEC-CCSSCEEEEEECSSCTTEEEEEETT-----
T ss_pred EEEEeCCCCCCeEEEE--eCCCeEEEEeCCCCCCCCceeccce---eec-CCCCCEeeeEEeCCCCCEEEEEeCC-----
Confidence 3455566544333333 35567889988763 22211110 000 00011122333 34455444443
Q ss_pred CcEEEEEECCCCe----eEEecCCCCCCceEEEEE-CCe-eEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecC
Q 040165 216 DPVIIAFDLAEEK----FCRVGEACHPRSVSLGVV-GGC-LSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDND 289 (358)
Q Consensus 216 ~~~i~~fD~~~~~----~~~i~~P~~~~~~~l~~~-~g~-L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~ 289 (358)
..|..||+.+.. ...+.... .....+.-. +|. +++.+. ....+.+|.+.... . .+..+...
T Consensus 254 -g~i~i~d~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~~l~tg~------~dg~v~vwd~~~~~--~---~~~~~~~h 320 (430)
T 2xyi_A 254 -QKLMIWDTRNNNTSKPSHTVDAHT-AEVNCLSFNPYSEFILATGS------ADKTVALWDLRNLK--L---KLHSFESH 320 (430)
T ss_dssp -SEEEEEETTCSCSSSCSEEEECCS-SCEEEEEECSSCTTEEEEEE------TTSEEEEEETTCTT--S---CSEEEECC
T ss_pred -CeEEEEECCCCCCCcceeEeecCC-CCeEEEEeCCCCCCEEEEEe------CCCeEEEEeCCCCC--C---CeEEeecC
Confidence 589999998752 11121111 112223332 454 444441 34679999987522 1 12222211
Q ss_pred CccccCceeeEEEEeeecCCCc-EEEEEcCcceEEEEECCC
Q 040165 290 IMVRYHGSLVTLCTATGTDGGD-EIIMINKWREFISCNLNE 329 (358)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~g~-i~~~~~~~~~l~~yd~~t 329 (358)
......+.+ ..+|+ +++.....+.+..||+++
T Consensus 321 -----~~~v~~i~~---sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 321 -----KDEIFQVQW---SPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp -----SSCEEEEEE---CSSCTTEEEEEETTSCCEEEEGGG
T ss_pred -----CCCEEEEEE---CCCCCCEEEEEeCCCcEEEEeCCC
Confidence 112344444 44453 555554333588888876
No 253
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=23.38 E-value=3.2e+02 Score=22.71 Aligned_cols=204 Identities=8% Similarity=-0.052 Sum_probs=0.0
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCC---CeEEEEEEccceEEEEEEcCCCc
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTD---DYKVLAVSCLRVLLKVFSMKAFS 174 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~---~ykvv~~~~~~~~~~vyss~t~~ 174 (358)
+.-+.+|-+++....+..+.|||...+....+..-... ...+.+.+... +-..+........+.+++.++.+
T Consensus 113 ~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 113 VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW-----VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSC-----EEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCc-----EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Q ss_pred eEecccccccccccccCCCCceEEECceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEECCeeEEEe
Q 040165 175 WRDVHYNLGVKLFYGTESPPKGCLFNGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVVGGCLSLNV 254 (358)
Q Consensus 175 W~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~~g~L~lv~ 254 (358)
-...-. ........-...-+|.+...+... ..|..+|+.+.+-...--..+.........+|.+..++
T Consensus 188 ~~~~~~------~h~~~v~~~~~sp~g~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 188 IEADFI------GHNSNINTLTASPDGTLIASAGKD------GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEEC------CCCSCEEEEEECTTSSEEEEEETT------CEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEE
T ss_pred hheeec------CCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEE
Q ss_pred ecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCe
Q 040165 255 CCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERT 331 (358)
Q Consensus 255 ~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~ 331 (358)
....+.+|.++. .........-..............+++ ..+|+.++.....+.+..+|+.|..
T Consensus 256 -------~~~~i~v~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~---spdg~~l~sg~~Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 256 -------TATGIKVFSLDP---QYLVDDLRPEFAGYSKAAEPHAVSLAW---SADGQTLFAGYTDNVIRVWQVMTAN 319 (319)
T ss_dssp -------ETTEEEEEEETT---EEEEEEECCCCTTCCGGGCCCEEEEEE---CTTSSEEEEEETTSCEEEEEEEEC-
T ss_pred -------cCCCcEEEEeCc---CeeeeccCccccccccCcCcceeEEEE---CCCCCEEEEeecCceEEEEEEeecC
No 254
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=23.03 E-value=3.7e+02 Score=23.32 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=40.5
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEE
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCN 326 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd 326 (358)
+|.+.+.+. ....+.+|.++.. . .+..+.... +......+++ ..+|+.++.....+.+..||
T Consensus 181 ~~~~l~~~~------~d~~i~iwd~~~~----~--~~~~~~~~~---h~~~v~~~~~---s~~~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 181 EKSLLVALT------NLSRVIIFDIRTL----E--RLQIIENSP---RHGAVSSICI---DEECCVLILGTTRGIIDIWD 242 (437)
T ss_dssp SCEEEEEEE------TTSEEEEEETTTC----C--EEEEEECCG---GGCCEEEEEE---CTTSCEEEEEETTSCEEEEE
T ss_pred CCCEEEEEe------CCCeEEEEeCCCC----e--eeEEEccCC---CCCceEEEEE---CCCCCEEEEEcCCCeEEEEE
Confidence 466655552 3468999988651 1 233333211 1112455555 55677665554444599999
Q ss_pred CCCCeEEEe
Q 040165 327 LNERTLEEI 335 (358)
Q Consensus 327 ~~t~~~~~v 335 (358)
+++++....
T Consensus 243 ~~~~~~~~~ 251 (437)
T 3gre_A 243 IRFNVLIRS 251 (437)
T ss_dssp TTTTEEEEE
T ss_pred cCCccEEEE
Confidence 998876543
No 255
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=22.72 E-value=4.9e+02 Score=24.56 Aligned_cols=206 Identities=9% Similarity=-0.037 Sum_probs=0.0
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCC-----
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKA----- 172 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t----- 172 (358)
+.-|-++.+++. ....++++|..+++...+...... ...+.+.|..+....+. ...+.+++..+
T Consensus 87 ~~~spd~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~SpdG~~la~~~----~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 87 TLDAGRGLVVLF--TQGGLVGFDMLARKVTYLFDTNEE-----TASLDFSPVGDRVAYVR----NHNLYIARGGKLGEGM 155 (706)
T ss_dssp EEETTTTEEEEE--ETTEEEEEETTTTEEEEEECCTTC-----CTTCEECTTSSEEEEEE----TTEEEEEECBCTTSCC
T ss_pred EEECCCCeEEEE--ECCEEEEEECCCCceEEccCCccc-----ccCCcCCCCCCEEEEEE----CCeEEEEecCcccccC
Q ss_pred CceEecccccccccccccC-------------CCCceEEECceEEEEee-------------------------------
Q 040165 173 FSWRDVHYNLGVKLFYGTE-------------SPPKGCLFNGALHWLVS------------------------------- 208 (358)
Q Consensus 173 ~~W~~~~~~~~~~~~~~~~-------------~~~~~v~~~G~lywl~~------------------------------- 208 (358)
+.-+.+.. ...... ...-...-||..-....
T Consensus 156 g~~~~~~~-----~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 156 SRAIAVTI-----DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp CCCEESCS-----CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred CCcEEecc-----CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Q ss_pred --cCCCCCCCcEEEEEECCCCeeEEecCC-CCCCceEEEEE--CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEE
Q 040165 209 --GFHFGSQDPVIIAFDLAEEKFCRVGEA-CHPRSVSLGVV--GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERL 283 (358)
Q Consensus 209 --~~~~~~~~~~i~~fD~~~~~~~~i~~P-~~~~~~~l~~~--~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~ 283 (358)
.. ..|..+|+.+++...+... .......-... +|+..++... ........||..+. ......
T Consensus 231 ~~~~------~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~v~~~d~----~~g~~~ 297 (706)
T 2z3z_A 231 PSHH------VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV---NRAQNECKVNAYDA----ETGRFV 297 (706)
T ss_dssp CCCE------EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE---CTTSCEEEEEEEET----TTCCEE
T ss_pred CCCe------eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe---CCCCCeeEEEEEEC----CCCcee
Q ss_pred EEeecCCccccCceeeEEEEeeecC--CCcEEEEEcCcc--eEEEEECCCCeEEEe
Q 040165 284 TKIDNDIMVRYHGSLVTLCTATGTD--GGDEIIMINKWR--EFISCNLNERTLEEI 335 (358)
Q Consensus 284 ~~i~~~~~~~~~~~~~~~~~~~~~~--~g~i~~~~~~~~--~l~~yd~~t~~~~~v 335 (358)
..+..............+.+ .. +|++++.....+ .++.+|..++..+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~---sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l 350 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTF---LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV 350 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEE---CTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred eEEEEccCCCeECccCCcee---ecCCCCEEEEEEccCCccEEEEEECCCCEEEec
No 256
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=22.39 E-value=2.8e+02 Score=24.13 Aligned_cols=30 Identities=7% Similarity=0.024 Sum_probs=21.0
Q ss_pred CCcEEEEEcCcceEEEEECCCCeEEEeeccc
Q 040165 309 GGDEIIMINKWREFISCNLNERTLEEIYRPN 339 (358)
Q Consensus 309 ~g~i~~~~~~~~~l~~yd~~t~~~~~v~~~~ 339 (358)
+|.||+...+. .++..|++|++..+-+...
T Consensus 111 ~g~Vy~Gs~~g-~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 111 DEKVYTGSMRT-IMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CEEEEECEEEE-EEEEEETTTCCEEEEESTT
T ss_pred CCEEEEEecCC-EEEEEECCCCcEEEEEecC
Confidence 44455555544 5999999999988876543
No 257
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=21.81 E-value=1e+02 Score=22.26 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=22.2
Q ss_pred eEEEEcccccceeccCCCCCCCCCCceEEEeE-----eCCCCCeEEEEEE
Q 040165 115 DFFIYNPSTRAHKKLPDPDISLGSPYLYGFGY-----DSSTDDYKVLAVS 159 (358)
Q Consensus 115 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~-----d~~~~~ykvv~~~ 159 (358)
.++.+||.|+.|.+...... ..+.+.+ |...+.|+|+...
T Consensus 12 ~V~~~d~~~~~W~p~~~g~l-----s~v~i~~~~~~~d~~~~~yrIv~~~ 56 (118)
T 1xod_A 12 VVMTRDDSSGGWLQLGGGGL-----SSVTVSKTLQPGDSGGTEFLVHGER 56 (118)
T ss_dssp EEEEECSSSSCEEEGGGCCC-----EEEEEECC---------CCEEEEEE
T ss_pred EEeeEcCCCCCEeeCCCCCc-----ccEEEEEecCcCCCCCCEEEEEEEE
Confidence 57788999999976643211 1222232 4566889998864
No 258
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=21.69 E-value=3.6e+02 Score=22.63 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=18.2
Q ss_pred eeEEEEeeecCCCcEEEEEcCcceEEEEECCCC
Q 040165 298 LVTLCTATGTDGGDEIIMINKWREFISCNLNER 330 (358)
Q Consensus 298 ~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~ 330 (358)
...+++ ..+|+.++.....+.+..||.+++
T Consensus 312 v~~~~~---sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 312 CTSLAW---NALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEEE---CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEEEE---CCCCCeEEEecCCceEEEEEEEcc
Confidence 445566 566775555444345888887654
No 259
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=20.55 E-value=5.2e+02 Score=24.04 Aligned_cols=202 Identities=15% Similarity=0.085 Sum_probs=94.8
Q ss_pred EEEeecceEEEEEeCCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEcc---ceEEEEEEcCCCc
Q 040165 98 IIGSCNGLVCMALHGCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCL---RVLLKVFSMKAFS 174 (358)
Q Consensus 98 ~~~s~~Gll~~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~---~~~~~vyss~t~~ 174 (358)
+.-|-+|-++.....+..+.|||..+++....-..+.. ......+.++|..+ + ++..... ...+.+++. ++
T Consensus 65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~--~~~v~~v~fs~dg~-~-l~~~~~~~~~~~~v~~wd~--~~ 138 (611)
T 1nr0_A 65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF--SGPVKDISWDSESK-R-IAAVGEGRERFGHVFLFDT--GT 138 (611)
T ss_dssp EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS--SSCEEEEEECTTSC-E-EEEEECCSSCSEEEEETTT--CC
T ss_pred EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc--CCceEEEEECCCCC-E-EEEEECCCCceeEEEEeeC--CC
Confidence 33455676666645677889999876554322111100 11145567777543 2 2222211 123444432 21
Q ss_pred eEecccccccccccccCCCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCC-CceEEEEE-CCee
Q 040165 175 WRDVHYNLGVKLFYGTESPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHP-RSVSLGVV-GGCL 250 (358)
Q Consensus 175 W~~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~-~~~~l~~~-~g~L 250 (358)
- ... +.. ....-.++.+ +|....+.+.. ...|..+|..+.+.... +..+. ....+.-. +|++
T Consensus 139 ~--~~~-----l~g-h~~~v~~v~f~p~~~~~l~s~s~-----D~~v~lwd~~~~~~~~~-l~~H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 139 S--NGN-----LTG-QARAMNSVDFKPSRPFRIISGSD-----DNTVAIFEGPPFKFKST-FGEHTKFVHSVRYNPDGSL 204 (611)
T ss_dssp B--CBC-----CCC-CSSCEEEEEECSSSSCEEEEEET-----TSCEEEEETTTBEEEEE-ECCCSSCEEEEEECTTSSE
T ss_pred C--cce-----ecC-CCCCceEEEECCCCCeEEEEEeC-----CCeEEEEECCCCeEeee-eccccCceEEEEECCCCCE
Confidence 1 111 110 0000112222 23333333333 24688888776554322 22222 12233333 7776
Q ss_pred EEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC--ccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECC
Q 040165 251 SLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI--MVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLN 328 (358)
Q Consensus 251 ~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~ 328 (358)
.+.++ ....+.+|.+.+ +. ....+.... ..++......+++ ..+|+.++.....+.+..+|++
T Consensus 205 las~s------~D~~i~lwd~~~----g~--~~~~~~~~~~~~~~h~~~V~~v~~---spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 205 FASTG------GDGTIVLYNGVD----GT--KTGVFEDDSLKNVAHSGSVFGLTW---SPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp EEEEE------TTSCEEEEETTT----CC--EEEECBCTTSSSCSSSSCEEEEEE---CTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEE------CCCcEEEEECCC----Cc--EeeeeccccccccccCCCEEEEEE---CCCCCEEEEEeCCCeEEEEeCC
Confidence 66552 346899998765 22 222221110 0122333555666 6677766655444469999999
Q ss_pred CCeEEE
Q 040165 329 ERTLEE 334 (358)
Q Consensus 329 t~~~~~ 334 (358)
+++...
T Consensus 270 ~~~~~~ 275 (611)
T 1nr0_A 270 TLKVEK 275 (611)
T ss_dssp TTEEEE
T ss_pred CCceee
Confidence 887654
No 260
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=20.53 E-value=5.6e+02 Score=24.42 Aligned_cols=163 Identities=8% Similarity=0.001 Sum_probs=82.1
Q ss_pred EEEeEeCCCCCeEEEEEEc--cceEEEEEEcCCC--ceEecccccccccccccCCCCceE-EECceEEEEeecCCCCCCC
Q 040165 142 YGFGYDSSTDDYKVLAVSC--LRVLLKVFSMKAF--SWRDVHYNLGVKLFYGTESPPKGC-LFNGALHWLVSGFHFGSQD 216 (358)
Q Consensus 142 ~~~~~d~~~~~ykvv~~~~--~~~~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~~ 216 (358)
....+++. ++|-++.... ....+.+.+..++ .|+.+.. +.. .....+ ..++.+|+++..+. ..
T Consensus 237 ~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~------~~~--~~~~~~~~~g~~l~~~t~~~~---~~ 304 (693)
T 3iuj_A 237 VGATVTED-DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG------DLD--ADVSLVDNKGSTLYLLTNRDA---PN 304 (693)
T ss_dssp EEEEECTT-SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC------SSS--SCEEEEEEETTEEEEEECTTC---TT
T ss_pred EEEEEcCC-CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC------CCC--ceEEEEeccCCEEEEEECCCC---CC
Confidence 44455554 5565555431 2246777787665 6777654 111 111223 34677888876532 13
Q ss_pred cEEEEEECCCC---eeEEecCCCCCCceEEEEECCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCCccc
Q 040165 217 PVIIAFDLAEE---KFCRVGEACHPRSVSLGVVGGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDIMVR 293 (358)
Q Consensus 217 ~~i~~fD~~~~---~~~~i~~P~~~~~~~l~~~~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~~~~ 293 (358)
..|+..|+.+. .|+.+ .|..+........++.|.+... ....-+|+.++-. ..+. ..+.....
T Consensus 305 ~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~s~~g~~lv~~~~------~~g~~~l~~~d~~---g~~~--~~l~~p~~-- 370 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHWRDL-IPERQQVLTVHSGSGYLFAEYM------VDATARVEQFDYE---GKRV--REVALPGL-- 370 (693)
T ss_dssp CEEEEEETTSCCGGGCEEE-ECCCSSCEEEEEETTEEEEEEE------ETTEEEEEEECTT---SCEE--EEECCSSS--
T ss_pred CEEEEEeCCCCCccccEEE-ecCCCCEEEEEEECCEEEEEEE------ECCeeEEEEEECC---CCee--EEeecCCC--
Confidence 58999999873 46654 2211112244445666666552 2233344554432 2333 23332211
Q ss_pred cCceeeEEEEeeecCCCc-EEEEEcCc---ceEEEEECCCCeEEEe
Q 040165 294 YHGSLVTLCTATGTDGGD-EIIMINKW---REFISCNLNERTLEEI 335 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~g~-i~~~~~~~---~~l~~yd~~t~~~~~v 335 (358)
.....+.. ..+++ +++..... ..++.||+++++.+.+
T Consensus 371 --~~~~~~~~---~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 371 --GSVSGFNG---KHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp --SEEEECCC---CTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred --ceEEeeec---CCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 01122222 22344 66654331 2599999999988777
No 261
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=20.52 E-value=4.8e+02 Score=23.64 Aligned_cols=179 Identities=11% Similarity=0.119 Sum_probs=85.1
Q ss_pred CCceEEEEcccccceeccCCCCCCCCCCceEEEeEeCCCCCeEEEEEEccceEEEEEEcCCCceEecccccccccccccC
Q 040165 112 GCKDFFIYNPSTRAHKKLPDPDISLGSPYLYGFGYDSSTDDYKVLAVSCLRVLLKVFSMKAFSWRDVHYNLGVKLFYGTE 191 (358)
Q Consensus 112 ~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~ 191 (358)
....+.+||..+++...+..... ....+.+.|.. ++-+.+ .....+.+|+.....-...... .
T Consensus 323 ~d~~i~~w~~~~~~~~~~~~~~~-----~v~~~~~s~~g-~~l~~~--~~dg~v~~~~~~~~~~~~~~~~-----~---- 385 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQTLTGHSS-----SVWGVAFSPDG-QTIASA--SDDKTVKLWNRNGQLLQTLTGH-----S---- 385 (577)
T ss_dssp TTSCEEEEETTSCEEEEECCCSS-----CEEEEEECTTS-SEEEEE--ETTSEEEEEETTCCEEEEEECC-----S----
T ss_pred CCCeEEEEeCCCCeeEEEeCCCC-----CEEEEEECCCC-CEEEEE--eCCCEEEEEcCCCCEEEEecCC-----C----
Confidence 45567788876665555433221 13445565543 232222 2445677887543332222210 0
Q ss_pred CCCceEEE--CceEEEEeecCCCCCCCcEEEEEECCCCeeEEecCCCCCCceEEEEE-CCeeEEEeecccccCCCCcEEE
Q 040165 192 SPPKGCLF--NGALHWLVSGFHFGSQDPVIIAFDLAEEKFCRVGEACHPRSVSLGVV-GGCLSLNVCCSNCVDKTTDFEL 268 (358)
Q Consensus 192 ~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~l~~~-~g~L~lv~~~~~~~~~~~~~~v 268 (358)
..-.++.+ +|.....+... ..|..||...+....+..+.. ....+... +|++.+.+. ....+.+
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~------~d~~v~~ 452 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLTGHSS-SVWGVAFSPDDQTIASAS------DDKTVKL 452 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETT------SEEEEECTTCCEEEEEECCSS-CEEEEEECTTSSEEEEEE------TTSEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCEEEEecCCCC-CeEEEEECCCCCEEEEEc------CCCEEEE
Confidence 00111221 44433333332 367778865554443332211 12233333 666555542 3467999
Q ss_pred EEEccCCCCCceeEEEEeecCCccccCceeeEEEEeeecCCCcEEEEEcCcceEEEEECCCCeEEEe
Q 040165 269 WVMKQYGVHSSWERLTKIDNDIMVRYHGSLVTLCTATGTDGGDEIIMINKWREFISCNLNERTLEEI 335 (358)
Q Consensus 269 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~yd~~t~~~~~v 335 (358)
|.++. + .+..+... ......+++ ..+|++++.....+.+..+|...+..+.+
T Consensus 453 w~~~~----~---~~~~~~~~-----~~~v~~~~~---spd~~~las~~~d~~i~iw~~~~~~~~~~ 504 (577)
T 2ymu_A 453 WNRNG----Q---LLQTLTGH-----SSSVRGVAF---SPDGQTIASASDDKTVKLWNRNGQLLQTL 504 (577)
T ss_dssp EETTS----C---EEEEEECC-----SSCEEEEEE---CTTSCEEEEEETTSEEEEEETTSCEEEEE
T ss_pred EECCC----C---EEEEEcCC-----CCCEEEEEE---cCCCCEEEEEeCCCEEEEEcCCCCEEEEE
Confidence 97532 1 22233221 122455566 66777655544433588888766655555
No 262
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=20.17 E-value=4.2e+02 Score=23.30 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.0
Q ss_pred CCeeEEEeecccccCCCCcEEEEEEccCCCCCceeEEEEeecCC
Q 040165 247 GGCLSLNVCCSNCVDKTTDFELWVMKQYGVHSSWERLTKIDNDI 290 (358)
Q Consensus 247 ~g~L~lv~~~~~~~~~~~~~~vW~l~~~~~~~~W~~~~~i~~~~ 290 (358)
-.++|+++.+ ...+.+|...+. ..|+++++.....
T Consensus 52 ~~~~~~~~~~------~~~v~lw~~~~~---~~~~~~~~~~~~~ 86 (356)
T 2w18_A 52 CKEPCIITAC------EDVVSLWKALDA---WQWEKLYTWHFAE 86 (356)
T ss_dssp -CEEEEEEEE------SSEEEEEEESSS---SBEEEEEEEECCS
T ss_pred CCccEEEEec------cceEEEcccCCC---ccceeeEEEeccC
Confidence 4567888843 368999999872 6899999987654
Done!