BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040166
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 9/155 (5%)
Query: 8 FVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASILLKPRRS---AHIAAMEM--- 61
FV L A GER F F+R P+A++L A I S A IA +
Sbjct: 94 FVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSXTDADIAEVTFEGX 153
Query: 62 --AKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDD 119
A+ +G I+S+D N R WP+ E + AD++K+S EEL L A+D
Sbjct: 154 RRAQAAGAIVSFDLNFRPXLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTL-AADA 212
Query: 120 NVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHV 154
N V+++L+ +LLLVT+ + +YT+ G V
Sbjct: 213 NAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEV 247
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 8 FVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASILL--------KPRRSAHIAAM 59
F + + E + +R A++ L E++ I ++ +LL P R A + A+
Sbjct: 103 FTEIKSPEECSILXYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAI 162
Query: 60 EMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDD 119
+AK + + ++ + R W + E + +++D++ + EE +L + D+
Sbjct: 163 RLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGDN 222
Query: 120 NVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVG 155
+ + LF + +L+++ G G YT+ + + G
Sbjct: 223 DETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAYRG 258
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 27 AEMLLCEAELDVNLIEKASIL--------LKPRRSAHIAAMEMAKTSGCILSYDPNARLL 78
A+ L E ++ LI+++ + KP R I A A+ G I+ +DP R +
Sbjct: 128 ADXYLQEDDIIFELIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKV 187
Query: 79 PWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTE 138
WP + G + I AD +K S ++ L G D+ ++ V ++ +K +++T
Sbjct: 188 LWPEGDDGAGVVEEIISRADFVKPSLDDARHLF-GPDSPENYV--KRYLELGVKAVILTL 244
Query: 139 GSNGC 143
G G
Sbjct: 245 GEEGV 249
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 8 FVTLTAEGERGFMFFRNPSAEMLLCEAELDVNL--------IEKASILLKPRRSAHIAAM 59
FVT G+R F+F +A L +D N+ I +S+ A A+
Sbjct: 95 FVTYHNSGDRDFIFNIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAV 154
Query: 60 EMAKTSGCILSYDPNAR--LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDAS 117
+ K +G ++S+DPN R L P R + + + D+ SE E+ LL S
Sbjct: 155 TIVKANGGVISFDPNIRKEXLDIPE---XRDALHFVLELTDIYXPSEGEVLLL---SPHS 208
Query: 118 DDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHV 154
+ +K ++V G+ G YY+ + HV
Sbjct: 209 TPERAIAGFLEEGVKEVIVKRGNQGASYYSANEQFHV 245
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 15 GERGFMFFRNPSAEMLLCEAELDVNLIEKASIL--------LKPR-RSAHIAAMEMAKTS 65
G+ ++R SA L D + +E L L P R+ + AME AK
Sbjct: 97 GQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRR 156
Query: 66 GCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLI 111
G +S D N R W S E ARG + D++ +SEEE LL
Sbjct: 157 GVRVSLDVNYRQTLW-SPEEARGFLERALPGVDLLFLSEEEAELLF 201
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 9/153 (5%)
Query: 7 LFVTLTAEGERGFMFFRNPSAEMLLCEAEL----DVNLIEKASILL--KPRRSAHIAAME 60
L V LTA+GER F + +P A+ + +L +SI L +P R A +
Sbjct: 107 LIVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGAR 166
Query: 61 MAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDN 120
+ +G + +D N R W + + I A + K+S +EL L D
Sbjct: 167 RXREAGGYVLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDAR 226
Query: 121 VVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGH 153
L L +++ G++G T E + H
Sbjct: 227 YYLRDL---GCDTTIISLGADGALLITAEGEFH 256
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 19 FMFFRNPSAEMLLCEAELDVNLIEKASILLKP---------RRSAHIAAMEMAKTSGCIL 69
+++R SA L +++ N + + ++ + A I A E+AK+
Sbjct: 104 LVYYRKGSAGSRLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR---- 159
Query: 70 SYDPNARLLPWPSAEAARGGIISIWDEADM-IKISEEELTLLIEGCDASDDNVVLEKLFH 128
S D N R W S E A+ I+SI + D+ + I++ + T ++ D +D + K
Sbjct: 160 SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKIL--LDVTDPDEAYRKYKE 217
Query: 129 SNLKLLLVTEGSNGCKYYTQEFKG 152
+K+LL GS G Y K
Sbjct: 218 LGVKVLLYKLGSKGAIAYKDNVKA 241
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 9/153 (5%)
Query: 7 LFVTLTAEGERGFMFFRNPSAEMLLCEAEL----DVNLIEKASILL--KPRRSAHIAAME 60
L V LTA+GER F + +P A+ + +L +SI L +P R A +
Sbjct: 107 LIVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGAR 166
Query: 61 MAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDN 120
+ +G + +D N R W + + I A + K+S +EL L D
Sbjct: 167 RMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDAR 226
Query: 121 VVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGH 153
L L +++ G++G T E + H
Sbjct: 227 YYLRDL---GCDTTIISLGADGALLITAEGEFH 256
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 60 EMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDD 119
++ + +G +S+DPN R W + E R I + AD + EE L + + +
Sbjct: 178 DLXRAAGRSVSFDPNLRPTLWATPELXRDAINDLATRADWVLPGXEEGRFLT--GETTPE 235
Query: 120 NVVLEKLFHSNL--KLLLVTEGSNGCKYYTQEFKGHVGG 156
V F+ L KL++V G+ G + + G V G
Sbjct: 236 GVA---RFYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAG 271
>pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
pdb|2TMK|B Chain B, Yeast Thymidylate Kinase Complexed With 3'-Azido-3'-
Deoxythymidine Monophosphate (Azt-Mp)
pdb|1TMK|A Chain A, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|1TMK|B Chain B, Yeast Thymidylate Kinase Complexed With Thymidine
Monophosphate (Dtmp)
pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|B Chain B, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|C Chain C, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|D Chain D, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|E Chain E, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|F Chain F, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|G Chain G, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
pdb|3TMK|H Chain H, Crystal Structure Of Yeast Thymidylate Kinase Complexed
With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
Implications For Catalysis And Azt Activation
Length = 216
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 62 AKTSGCILSY---DPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLL 110
KT+ C + Y PN +LL +P GG+I+ + D ++S++ + LL
Sbjct: 17 GKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLL 68
>pdb|2PYW|A Chain A, Structure Of A. Thaliana 5-Methylthioribose Kinase In
Complex With Adp And Mtr
pdb|2PYW|B Chain B, Structure Of A. Thaliana 5-Methylthioribose Kinase In
Complex With Adp And Mtr
Length = 420
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 113 GCDASDDNVVLEKLFHSNLKLLLVTEGSNGC 143
G D SDD++V++++ NL + + GS+G
Sbjct: 29 GADKSDDDLVIKEVGDGNLNFVFIVVGSSGS 59
>pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
Length = 704
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 83 AEAARGGIISI-----WDEADMIKISE----EELTLLIEGCDASDDNVVLEKLFHSNLK 132
AE ARGG+I +D + K+++ E L E C D +VL +L HSNLK
Sbjct: 48 AEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCI---DTLVLSRLIHSNLK 103
>pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
Length = 698
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 83 AEAARGGIISI-----WDEADMIKISE----EELTLLIEGCDASDDNVVLEKLFHSNLK 132
AE ARGG+I +D + K+++ E L E C D +VL +L HSNLK
Sbjct: 48 AEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCI---DTLVLSRLIHSNLK 103
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide
Length = 698
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 83 AEAARGGIISI-----WDEADMIKISE----EELTLLIEGCDASDDNVVLEKLFHSNLK 132
AE ARGG+I +D + K+++ E L E C D +VL +L HSNLK
Sbjct: 48 AEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCI---DTLVLSRLIHSNLK 103
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 7 LFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKA-----------SILLKPRRSAH 55
L++ +GER F ++R SA L + +IL + R+
Sbjct: 108 LYLITLEQGERSFAYWRGQSAARELAGDADALAAAMARADVVYFSGITLAILDQCGRATL 167
Query: 56 IAAMEMAKTSGCILSYDPNARLLPW 80
+ A+ A+ +G +++DPN R W
Sbjct: 168 LRALAQARATGRTIAFDPNLRPRLW 192
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 18/156 (11%)
Query: 1 MQGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEK-------------ASIL 47
+ GL+ ++ + GER F ++RN +A +E + E+ +IL
Sbjct: 86 LPGLY--YIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDYLYLSGISLAIL 143
Query: 48 LKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEEL 107
R ++ + + G + +D N R W S E + + D+ ++ ++
Sbjct: 144 SPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQXLECTDIAFLTLDDE 203
Query: 108 TLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGC 143
L D V+ + ++ +K ++V G++ C
Sbjct: 204 DALWGQQPVED---VIARTHNAGVKEVVVKRGADSC 236
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 39/156 (25%)
Query: 20 MFFRNPSAEMLLCEAELD------VNLIEKASILLKPRRSAHIA---AMEMAKTSGCILS 70
+++R SA L ++D +L+ + I L +A A A E+A S
Sbjct: 105 IYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNR----S 160
Query: 71 YDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVL------- 123
+D N RL W SAE A+ I+ + +S+ L LI D D ++L
Sbjct: 161 FDTNIRLKLW-SAEEAKREILKL--------LSKFHLKFLI--TDTDDSKIILGESDPDK 209
Query: 124 -EKLFHSNLKLLLVTEGSNGC-------KYYTQEFK 151
K F +++++ G G KYY+ ++
Sbjct: 210 AAKAFSDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQ 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,458,412
Number of Sequences: 62578
Number of extensions: 157668
Number of successful extensions: 408
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 20
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)