Query 040166
Match_columns 156
No_of_seqs 114 out of 1336
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02967 kinase 99.9 2.2E-22 4.7E-27 159.6 17.2 148 2-150 295-464 (581)
2 PLN02543 pfkB-type carbohydrat 99.9 3.1E-22 6.7E-27 157.0 16.0 147 2-148 224-404 (496)
3 PLN02323 probable fructokinase 99.9 3.3E-21 7.2E-26 145.5 17.3 153 2-156 95-255 (330)
4 PRK15074 inosine/guanosine kin 99.9 1E-20 2.2E-25 146.7 14.3 136 3-147 148-294 (434)
5 PRK09434 aminoimidazole ribosi 99.9 2.6E-20 5.7E-25 139.1 14.9 150 2-156 80-238 (304)
6 cd01166 KdgK 2-keto-3-deoxyglu 99.9 1.1E-19 2.3E-24 134.9 17.5 153 2-156 83-244 (294)
7 cd01167 bac_FRK Fructokinases 99.8 1.9E-19 4.1E-24 133.7 16.2 151 2-156 80-238 (295)
8 cd01168 adenosine_kinase Adeno 99.8 7.4E-19 1.6E-23 131.7 15.9 148 2-156 106-259 (312)
9 COG0524 RbsK Sugar kinases, ri 99.8 1.1E-18 2.5E-23 130.6 16.0 140 2-150 89-235 (311)
10 PLN02341 pfkB-type carbohydrat 99.8 5.4E-18 1.2E-22 133.4 15.7 151 3-156 180-344 (470)
11 PTZ00292 ribokinase; Provision 99.8 3.7E-18 8E-23 128.7 14.2 148 2-156 104-261 (326)
12 PLN02379 pfkB-type carbohydrat 99.8 3.3E-18 7.1E-23 130.9 13.9 145 2-156 138-291 (367)
13 PLN02813 pfkB-type carbohydrat 99.8 1.8E-17 3.9E-22 128.9 17.7 148 2-156 185-341 (426)
14 PTZ00247 adenosine kinase; Pro 99.8 5E-18 1.1E-22 129.0 13.4 145 2-156 117-282 (345)
15 PRK11142 ribokinase; Provision 99.8 9.9E-18 2.1E-22 125.2 14.0 143 2-156 91-240 (306)
16 cd01944 YegV_kinase_like YegV- 99.8 2.4E-17 5.1E-22 122.3 15.0 146 2-156 86-241 (289)
17 cd01174 ribokinase Ribokinase 99.8 2.4E-17 5.1E-22 122.3 14.5 143 2-156 88-237 (292)
18 TIGR02152 D_ribokin_bact ribok 99.7 3.5E-16 7.6E-21 116.2 14.5 144 2-156 83-233 (293)
19 cd01943 MAK32 MAK32 kinase. M 99.7 2.4E-16 5.3E-21 119.0 12.8 149 2-156 81-252 (328)
20 KOG2855 Ribokinase [Carbohydra 99.7 2.5E-16 5.4E-21 116.5 11.7 149 2-155 98-255 (330)
21 cd01942 ribokinase_group_A Rib 99.7 5.4E-16 1.2E-20 114.3 12.9 136 2-156 88-228 (279)
22 PF00294 PfkB: pfkB family car 99.7 1.1E-16 2.4E-21 119.0 9.0 147 2-156 88-244 (301)
23 cd01945 ribokinase_group_B Rib 99.7 1.3E-15 2.9E-20 112.5 11.7 138 3-156 89-229 (284)
24 PLN02548 adenosine kinase 99.7 6.2E-15 1.4E-19 111.5 14.9 147 2-155 106-270 (332)
25 PRK09850 pseudouridine kinase; 99.6 1E-14 2.2E-19 109.5 12.8 143 2-155 92-242 (313)
26 cd01940 Fructoselysine_kinase_ 99.6 2.9E-14 6.3E-19 104.4 14.9 137 3-156 74-213 (264)
27 cd01939 Ketohexokinase Ketohex 99.6 2.2E-14 4.7E-19 106.6 12.2 140 3-156 89-238 (290)
28 PLN02630 pfkB-type carbohydrat 99.6 5.3E-14 1.1E-18 106.5 14.4 137 2-156 78-228 (335)
29 cd01941 YeiC_kinase_like YeiC- 99.6 2.3E-14 5E-19 106.1 11.7 146 2-156 86-241 (288)
30 PRK13508 tagatose-6-phosphate 99.6 6.2E-14 1.3E-18 105.1 13.5 139 3-155 85-239 (309)
31 cd01947 Guanosine_kinase_like 99.6 4.8E-14 1E-18 103.4 12.5 128 2-156 86-215 (265)
32 TIGR01231 lacC tagatose-6-phos 99.6 6.1E-14 1.3E-18 105.1 13.1 142 4-155 86-239 (309)
33 PRK09954 putative kinase; Prov 99.6 1.1E-13 2.4E-18 105.9 12.7 143 2-155 145-295 (362)
34 PRK10294 6-phosphofructokinase 99.5 2.1E-13 4.6E-18 102.2 12.9 138 4-155 90-242 (309)
35 TIGR03168 1-PFK hexose kinase, 99.5 4.1E-13 8.9E-18 100.3 14.0 139 3-156 85-238 (303)
36 TIGR03828 pfkB 1-phosphofructo 99.5 3.7E-13 8.1E-18 100.4 13.4 138 3-156 85-238 (304)
37 PRK09813 fructoselysine 6-kina 99.5 5.8E-13 1.3E-17 97.5 11.9 135 2-156 74-210 (260)
38 cd00287 ribokinase_pfkB_like r 99.5 8.8E-13 1.9E-17 92.3 11.9 99 53-156 71-172 (196)
39 PRK09513 fruK 1-phosphofructok 99.5 1.5E-12 3.2E-17 97.8 13.6 138 3-155 89-241 (312)
40 cd01172 RfaE_like RfaE encodes 99.5 1.2E-12 2.5E-17 97.7 12.7 138 3-156 91-245 (304)
41 cd01164 FruK_PfkB_like 1-phosp 99.5 1.4E-12 2.9E-17 96.9 12.7 137 3-155 86-238 (289)
42 cd01937 ribokinase_group_D Rib 99.5 6.5E-13 1.4E-17 96.8 10.6 136 3-156 72-209 (254)
43 cd01946 ribokinase_group_C Rib 99.4 2.2E-12 4.8E-17 95.2 10.0 109 39-156 110-220 (277)
44 TIGR02198 rfaE_dom_I rfaE bifu 99.4 8.7E-12 1.9E-16 93.6 11.4 105 39-156 139-253 (315)
45 cd01173 pyridoxal_pyridoxamine 99.4 8.5E-12 1.8E-16 91.1 11.1 103 48-150 83-198 (254)
46 KOG2854 Possible pfkB family c 99.4 4.4E-12 9.5E-17 93.5 9.3 145 2-153 117-279 (343)
47 PRK12413 phosphomethylpyrimidi 99.4 1.1E-11 2.5E-16 90.4 10.7 90 53-142 83-177 (253)
48 PRK07105 pyridoxamine kinase; 99.3 3.9E-11 8.5E-16 89.1 11.0 101 48-148 86-200 (284)
49 COG1105 FruK Fructose-1-phosph 99.3 1.6E-10 3.4E-15 85.7 13.5 93 50-154 143-238 (310)
50 PRK05756 pyridoxamine kinase; 99.3 4.9E-11 1.1E-15 88.7 10.7 107 48-154 85-206 (286)
51 PRK11316 bifunctional heptose 99.2 1.1E-10 2.5E-15 92.3 11.8 140 2-156 101-251 (473)
52 cd01169 HMPP_kinase 4-amino-5- 99.2 2.7E-10 5.7E-15 82.6 12.3 104 52-155 80-194 (242)
53 PRK08176 pdxK pyridoxal-pyrido 99.2 1.8E-10 3.8E-15 85.5 11.4 102 48-150 99-215 (281)
54 TIGR00687 pyridox_kin pyridoxa 99.2 2E-10 4.4E-15 85.3 10.5 95 48-143 85-188 (286)
55 TIGR00097 HMP-P_kinase phospho 99.2 4.5E-10 9.9E-15 82.1 11.7 103 52-155 79-193 (254)
56 PRK08573 phosphomethylpyrimidi 99.2 4.8E-10 1E-14 88.1 11.9 104 51-155 82-197 (448)
57 PRK06427 bifunctional hydroxy- 99.2 6.5E-10 1.4E-14 81.7 11.9 102 52-154 85-200 (266)
58 PRK12412 pyridoxal kinase; Rev 99.1 8.8E-10 1.9E-14 81.2 11.3 93 51-143 83-181 (268)
59 PTZ00344 pyridoxal kinase; Pro 99.1 3.6E-09 7.8E-14 79.1 11.7 93 49-142 89-190 (296)
60 PRK12616 pyridoxal kinase; Rev 99.0 3.9E-09 8.5E-14 77.9 11.1 101 52-152 86-199 (270)
61 PLN02978 pyridoxal kinase 98.9 2.5E-08 5.4E-13 75.0 12.1 96 48-144 97-200 (308)
62 PTZ00347 phosphomethylpyrimidi 98.8 1.1E-07 2.4E-12 76.0 10.7 89 52-142 311-409 (504)
63 PF08543 Phos_pyr_kin: Phospho 98.7 3.4E-07 7.3E-12 66.8 10.2 89 48-140 71-165 (246)
64 PRK14713 multifunctional hydro 98.7 2.5E-07 5.3E-12 74.4 10.3 90 48-141 109-205 (530)
65 PLN02898 HMP-P kinase/thiamin- 98.6 6.4E-07 1.4E-11 71.6 11.7 101 52-153 90-204 (502)
66 PRK09517 multifunctional thiam 98.6 4.7E-07 1E-11 75.5 10.6 101 52-154 322-436 (755)
67 COG0351 ThiD Hydroxymethylpyri 98.6 8.9E-07 1.9E-11 64.5 10.5 100 52-151 84-194 (263)
68 cd01170 THZ_kinase 4-methyl-5- 98.6 3E-06 6.4E-11 61.7 12.4 111 39-155 45-175 (242)
69 COG2240 PdxK Pyridoxal/pyridox 98.4 2.6E-06 5.6E-11 62.5 8.6 93 48-141 84-183 (281)
70 COG2870 RfaE ADP-heptose synth 98.4 2.4E-06 5.2E-11 65.2 8.2 90 54-156 159-250 (467)
71 TIGR00694 thiM hydroxyethylthi 98.1 0.00011 2.3E-09 53.8 11.9 100 47-152 60-171 (249)
72 KOG2599 Pyridoxal/pyridoxine/p 98.0 2.7E-05 5.8E-10 56.6 7.3 89 51-140 95-190 (308)
73 cd01171 YXKO-related B.subtili 98.0 5.3E-05 1.1E-09 55.4 8.8 88 53-150 91-183 (254)
74 TIGR00196 yjeF_cterm yjeF C-te 98.0 4.4E-05 9.5E-10 56.5 8.4 89 55-152 108-198 (272)
75 PRK09355 hydroxyethylthiazole 97.9 0.00033 7.2E-09 51.6 12.0 90 47-140 65-166 (263)
76 PTZ00493 phosphomethylpyrimidi 97.9 0.00016 3.4E-09 54.7 9.5 73 68-140 107-190 (321)
77 COG2145 ThiM Hydroxyethylthiaz 97.3 0.0073 1.6E-07 44.0 10.5 63 47-113 66-130 (265)
78 PF02110 HK: Hydroxyethylthiaz 97.2 0.0072 1.6E-07 44.1 10.2 93 47-144 60-164 (246)
79 KOG2598 Phosphomethylpyrimidin 97.0 0.0034 7.4E-08 48.9 6.7 88 52-141 107-205 (523)
80 KOG2947 Carbohydrate kinase [C 96.7 0.031 6.8E-07 40.6 9.4 132 8-155 98-246 (308)
81 PRK14038 ADP-dependent glucoki 94.1 0.62 1.3E-05 37.1 9.1 76 56-136 249-340 (453)
82 TIGR02045 P_fruct_ADP ADP-spec 92.5 3.9 8.4E-05 32.7 11.1 78 55-136 238-330 (446)
83 PRK10076 pyruvate formate lyas 92.4 1.3 2.8E-05 31.8 7.8 72 52-132 53-129 (213)
84 PRK14039 ADP-dependent glucoki 90.3 2.1 4.5E-05 34.2 7.7 68 65-136 251-329 (453)
85 PRK10565 putative carbohydrate 88.2 8.8 0.00019 31.3 10.0 47 56-113 337-385 (508)
86 COG1180 PflA Pyruvate-formate 87.7 4.9 0.00011 29.7 7.7 73 51-132 97-174 (260)
87 KOG3974 Predicted sugar kinase 87.0 7.9 0.00017 28.8 8.2 91 48-144 114-206 (306)
88 KOG3009 Predicted carbohydrate 86.2 9.9 0.00021 30.7 8.9 104 37-149 420-540 (614)
89 PF04587 ADP_PFK_GK: ADP-speci 83.4 8.3 0.00018 30.9 7.6 54 55-112 238-292 (444)
90 PRK03979 ADP-specific phosphof 80.2 16 0.00034 29.5 8.0 69 64-136 262-344 (463)
91 TIGR00334 5S_RNA_mat_M5 ribonu 77.2 9.5 0.00021 26.5 5.3 52 51-108 34-85 (174)
92 TIGR02494 PFLE_PFLC glycyl-rad 73.6 32 0.00069 25.6 7.9 73 52-133 140-217 (295)
93 PRK13397 3-deoxy-7-phosphohept 72.8 34 0.00075 25.2 7.6 85 47-142 60-162 (250)
94 TIGR02826 RNR_activ_nrdG3 anae 72.2 18 0.00039 24.2 5.7 47 51-106 73-119 (147)
95 COG0269 SgbH 3-hexulose-6-phos 71.2 36 0.00078 24.5 8.6 54 43-102 80-136 (217)
96 PF01256 Carb_kinase: Carbohyd 69.9 40 0.00088 24.6 9.8 82 58-152 86-173 (242)
97 PF13986 DUF4224: Domain of un 68.1 7.8 0.00017 20.6 2.6 32 101-135 2-33 (47)
98 cd01938 ADPGK_ADPPFK ADP-depen 65.3 30 0.00065 27.8 6.4 42 67-112 245-286 (445)
99 PF02515 CoA_transf_3: CoA-tra 57.1 14 0.0003 25.8 3.0 57 69-142 1-59 (191)
100 smart00642 Aamy Alpha-amylase 55.7 18 0.00038 24.8 3.3 24 52-75 69-92 (166)
101 KOG2882 p-Nitrophenyl phosphat 55.3 26 0.00056 26.6 4.2 48 90-138 15-62 (306)
102 COG1921 SelA Selenocysteine sy 54.6 27 0.00059 27.6 4.4 48 55-107 176-224 (395)
103 PLN02520 bifunctional 3-dehydr 53.3 1.3E+02 0.0028 24.8 9.7 79 55-144 124-206 (529)
104 COG1658 Small primase-like pro 52.4 55 0.0012 21.5 5.0 53 52-110 43-95 (127)
105 PF01212 Beta_elim_lyase: Beta 52.3 17 0.00037 27.3 3.0 54 50-106 142-195 (290)
106 PRK03525 crotonobetainyl-CoA:c 52.2 53 0.0012 26.0 5.8 61 65-141 65-126 (405)
107 PRK13575 3-dehydroquinate dehy 51.0 95 0.0021 22.6 10.0 81 51-144 110-200 (238)
108 PF00265 TK: Thymidine kinase; 49.1 55 0.0012 22.6 4.9 40 55-101 92-134 (176)
109 TIGR01093 aroD 3-dehydroquinat 48.7 99 0.0021 22.2 10.7 83 52-144 104-193 (228)
110 PF00128 Alpha-amylase: Alpha 48.7 27 0.00058 25.6 3.6 25 52-76 51-75 (316)
111 PTZ00445 p36-lilke protein; Pr 47.3 97 0.0021 22.4 5.9 24 51-74 27-51 (219)
112 PF03808 Glyco_tran_WecB: Glyc 46.9 91 0.002 21.3 6.8 20 52-71 34-53 (172)
113 PRK12595 bifunctional 3-deoxy- 46.7 1.2E+02 0.0027 23.6 7.0 82 49-141 165-264 (360)
114 TIGR02493 PFLA pyruvate format 46.6 1E+02 0.0023 21.9 9.8 75 52-133 80-159 (235)
115 COG0710 AroD 3-dehydroquinate 44.9 1.2E+02 0.0026 22.1 7.3 82 53-145 105-191 (231)
116 TIGR03253 oxalate_frc formyl-C 43.9 39 0.00084 26.8 3.9 63 62-140 62-125 (415)
117 COG2257 Uncharacterized homolo 43.6 28 0.00061 21.4 2.4 24 51-74 30-53 (92)
118 PRK02126 ribonuclease Z; Provi 42.9 78 0.0017 24.4 5.3 67 65-141 241-315 (334)
119 PRK05398 formyl-coenzyme A tra 42.4 39 0.00084 26.8 3.7 60 63-138 64-124 (416)
120 PRK11430 putative CoA-transfer 40.8 44 0.00095 26.2 3.8 61 62-138 67-128 (381)
121 PF03456 uDENN: uDENN domain; 40.3 40 0.00087 18.8 2.7 20 2-21 41-60 (65)
122 PF00150 Cellulase: Cellulase 39.7 48 0.001 24.0 3.7 27 49-75 58-84 (281)
123 COG0036 Rpe Pentose-5-phosphat 38.8 56 0.0012 23.6 3.7 43 51-101 94-136 (220)
124 TIGR01361 DAHP_synth_Bsub phos 38.3 1.6E+02 0.0035 21.7 6.8 77 51-138 74-167 (260)
125 KOG2299 Ribonuclease HI [Repli 37.9 1.4E+02 0.0031 22.3 5.6 65 30-100 99-167 (301)
126 PF07555 NAGidase: beta-N-acet 37.5 1.9E+02 0.004 22.1 6.5 27 48-74 51-77 (306)
127 TIGR02491 NrdG anaerobic ribon 36.9 75 0.0016 21.3 4.0 44 52-101 80-127 (154)
128 PRK11145 pflA pyruvate formate 36.8 1.6E+02 0.0035 21.2 8.9 74 52-132 85-163 (246)
129 PRK13762 tRNA-modifying enzyme 36.7 1.9E+02 0.0042 22.1 7.6 71 54-133 146-224 (322)
130 cd05014 SIS_Kpsf KpsF-like pro 36.3 70 0.0015 20.1 3.7 27 120-146 64-90 (128)
131 COG1973 HypE Hydrogenase matur 35.3 63 0.0014 25.1 3.7 87 57-152 303-394 (449)
132 TIGR01305 GMP_reduct_1 guanosi 34.9 1.1E+02 0.0024 23.7 5.0 17 124-140 165-181 (343)
133 PTZ00293 thymidine kinase; Pro 34.2 1.1E+02 0.0024 21.9 4.7 39 55-100 92-133 (211)
134 PF08357 SEFIR: SEFIR domain; 33.9 1E+02 0.0022 20.2 4.3 51 51-103 14-67 (150)
135 PRK13237 tyrosine phenol-lyase 33.5 1.1E+02 0.0023 24.9 4.8 51 52-104 197-258 (460)
136 PRK04296 thymidine kinase; Pro 33.1 1.6E+02 0.0035 20.4 5.3 42 53-101 93-137 (190)
137 PRK09722 allulose-6-phosphate 32.6 72 0.0016 23.2 3.5 39 55-101 97-135 (229)
138 PF02571 CbiJ: Precorrin-6x re 32.4 36 0.00079 25.0 2.0 79 60-146 60-145 (249)
139 PF04413 Glycos_transf_N: 3-De 32.0 1.8E+02 0.0038 20.2 5.7 50 57-106 109-159 (186)
140 PRK08005 epimerase; Validated 32.0 75 0.0016 22.8 3.5 39 55-101 95-133 (210)
141 PLN00196 alpha-amylase; Provis 31.9 60 0.0013 26.0 3.3 23 52-74 91-113 (428)
142 PRK08745 ribulose-phosphate 3- 31.8 74 0.0016 23.0 3.5 39 55-101 99-137 (223)
143 PF02630 SCO1-SenC: SCO1/SenC; 31.1 1.7E+02 0.0038 19.9 5.3 57 47-108 67-128 (174)
144 COG3434 Predicted signal trans 31.0 46 0.00099 26.1 2.4 45 52-104 97-141 (407)
145 COG0547 TrpD Anthranilate phos 30.8 76 0.0016 24.6 3.5 21 123-143 206-226 (338)
146 cd05710 SIS_1 A subgroup of th 30.5 73 0.0016 20.2 3.0 26 120-145 64-89 (120)
147 PF13277 YmdB: YmdB-like prote 30.1 39 0.00085 25.0 1.8 55 47-104 7-64 (253)
148 PF03841 SelA: L-seryl-tRNA se 29.6 51 0.0011 25.8 2.4 49 55-105 159-212 (367)
149 KOG0053 Cystathionine beta-lya 29.4 88 0.0019 24.9 3.7 39 55-103 181-220 (409)
150 TIGR01459 HAD-SF-IIA-hyp4 HAD- 29.2 95 0.0021 22.3 3.8 16 124-139 58-77 (242)
151 PRK09441 cytoplasmic alpha-amy 28.9 71 0.0015 25.8 3.3 23 52-74 80-102 (479)
152 PRK08883 ribulose-phosphate 3- 28.8 92 0.002 22.4 3.6 41 54-102 94-134 (220)
153 TIGR02618 tyr_phenol_ly tyrosi 28.7 1.3E+02 0.0029 24.3 4.7 53 52-105 190-252 (450)
154 cd00502 DHQase_I Type I 3-dehy 28.5 2.2E+02 0.0048 20.3 9.4 79 53-144 100-188 (225)
155 PRK11613 folP dihydropteroate 28.4 2.4E+02 0.0052 21.2 5.8 36 54-91 164-202 (282)
156 PRK10785 maltodextrin glucosid 28.3 72 0.0016 26.7 3.3 24 52-75 225-248 (598)
157 PRK13307 bifunctional formalde 28.3 1.3E+02 0.0029 23.8 4.5 47 50-103 260-306 (391)
158 PF13200 DUF4015: Putative gly 27.6 89 0.0019 24.0 3.4 50 53-103 170-224 (316)
159 PF10686 DUF2493: Protein of u 27.3 88 0.0019 18.1 2.7 21 123-143 24-45 (71)
160 cd05008 SIS_GlmS_GlmD_1 SIS (S 27.2 84 0.0018 19.7 2.9 26 119-144 62-87 (126)
161 cd04865 LigD_Pol_like_2 LigD_P 27.1 85 0.0018 22.9 3.1 53 94-147 96-149 (228)
162 PRK04210 phosphoenolpyruvate c 27.0 3.9E+02 0.0084 22.6 7.2 103 43-149 26-137 (601)
163 COG2200 Rtn c-di-GMP phosphodi 27.0 2.5E+02 0.0055 20.5 8.5 52 52-113 135-188 (256)
164 TIGR02456 treS_nterm trehalose 26.9 80 0.0017 26.0 3.3 24 52-75 75-98 (539)
165 TIGR00696 wecB_tagA_cpsF bacte 26.9 2.2E+02 0.0047 19.7 8.0 20 52-71 34-53 (177)
166 COG3033 TnaA Tryptophanase [Am 26.8 1.4E+02 0.003 23.8 4.3 52 49-104 202-266 (471)
167 COG1500 Predicted exosome subu 26.7 53 0.0011 23.9 1.9 28 100-130 56-83 (234)
168 cd04862 PaeLigD_Pol_like PaeLi 26.6 88 0.0019 22.8 3.1 53 94-147 95-148 (227)
169 PF02679 ComA: (2R)-phospho-3- 26.5 1.3E+02 0.0029 22.1 4.1 35 63-103 10-44 (244)
170 TIGR02778 ligD_pol DNA polymer 26.5 88 0.0019 23.1 3.1 53 94-147 111-164 (245)
171 PF14252 DUF4347: Domain of un 26.3 2E+02 0.0044 19.7 4.7 62 69-148 3-66 (165)
172 PF00834 Ribul_P_3_epim: Ribul 25.9 46 0.00099 23.6 1.5 41 53-101 92-132 (201)
173 PLN02361 alpha-amylase 25.6 91 0.002 24.8 3.3 23 52-74 75-97 (401)
174 TIGR02403 trehalose_treC alpha 25.6 87 0.0019 25.9 3.3 24 52-75 74-97 (543)
175 PRK11359 cyclic-di-GMP phospho 25.4 4.3E+02 0.0092 22.5 8.2 53 52-113 677-730 (799)
176 COG0063 Predicted sugar kinase 25.1 3E+02 0.0066 20.7 8.1 16 98-113 154-169 (284)
177 COG0111 SerA Phosphoglycerate 24.9 91 0.002 23.9 3.1 48 56-103 155-204 (324)
178 cd04864 LigD_Pol_like_1 LigD_P 24.8 1E+02 0.0022 22.5 3.1 52 94-147 97-149 (228)
179 TIGR02402 trehalose_TreZ malto 24.8 1E+02 0.0022 25.5 3.5 24 52-75 159-182 (542)
180 PRK09776 putative diguanylate 24.7 5E+02 0.011 23.1 8.1 53 52-113 973-1026(1092)
181 PF07745 Glyco_hydro_53: Glyco 24.5 1E+02 0.0022 23.8 3.3 25 51-75 56-80 (332)
182 PRK12313 glycogen branching en 24.2 1.1E+02 0.0023 25.9 3.6 23 52-74 219-241 (633)
183 COG3285 Predicted eukaryotic-t 24.1 1.1E+02 0.0023 23.3 3.1 26 123-148 150-176 (299)
184 cd04861 LigD_Pol_like LigD_Pol 23.9 1.1E+02 0.0023 22.3 3.1 53 94-147 95-148 (227)
185 PF04843 Herpes_teg_N: Herpesv 23.8 2E+02 0.0043 19.9 4.3 23 129-151 120-142 (172)
186 PLN02645 phosphoglycolate phos 23.7 1.6E+02 0.0036 22.1 4.3 7 68-74 30-36 (311)
187 cd04866 LigD_Pol_like_3 LigD_P 23.7 1.1E+02 0.0024 22.3 3.1 52 95-147 91-143 (223)
188 TIGR02495 NrdG2 anaerobic ribo 23.5 2.5E+02 0.0054 19.1 8.2 73 55-136 79-159 (191)
189 PRK08091 ribulose-phosphate 3- 23.5 1.4E+02 0.003 21.7 3.6 39 55-101 105-145 (228)
190 COG2876 AroA 3-deoxy-D-arabino 22.9 3.4E+02 0.0073 20.5 6.6 85 50-147 93-194 (286)
191 TIGR03278 methan_mark_10 putat 22.8 4E+02 0.0087 21.3 9.0 71 52-128 88-165 (404)
192 TIGR02104 pulA_typeI pullulana 22.7 1.1E+02 0.0023 25.7 3.4 23 53-75 229-251 (605)
193 cd04863 MtLigD_Pol_like MtLigD 22.6 1.2E+02 0.0025 22.2 3.1 53 94-147 99-152 (231)
194 PF02593 dTMP_synthase: Thymid 22.3 2.1E+02 0.0046 20.7 4.4 57 41-102 49-109 (217)
195 cd05013 SIS_RpiR RpiR-like pro 22.3 1.2E+02 0.0026 19.0 2.9 25 120-144 77-101 (139)
196 PF14488 DUF4434: Domain of un 22.3 1.2E+02 0.0027 20.7 3.1 31 51-81 63-93 (166)
197 PF13911 AhpC-TSA_2: AhpC/TSA 22.2 1.1E+02 0.0024 19.0 2.7 20 124-143 7-27 (115)
198 cd05006 SIS_GmhA Phosphoheptos 22.2 1.7E+02 0.0037 19.8 3.8 36 119-154 117-152 (177)
199 PRK11059 regulatory protein Cs 22.0 4.8E+02 0.01 21.9 9.1 54 52-113 532-585 (640)
200 TIGR00441 gmhA phosphoheptose 21.9 1.9E+02 0.004 19.3 3.9 24 122-145 98-121 (154)
201 TIGR03128 RuMP_HxlA 3-hexulose 21.8 2.7E+02 0.0058 19.3 4.8 42 54-103 90-133 (206)
202 PF09673 TrbC_Ftype: Type-F co 21.8 1.4E+02 0.003 19.0 3.0 26 49-74 7-32 (113)
203 COG1242 Predicted Fe-S oxidore 21.6 3.7E+02 0.0081 20.5 8.3 80 52-133 99-184 (312)
204 PF11965 DUF3479: Domain of un 21.5 2.6E+02 0.0056 19.2 4.5 12 101-112 92-103 (164)
205 COG0626 MetC Cystathionine bet 21.5 1.2E+02 0.0025 24.1 3.1 23 55-77 168-190 (396)
206 PF00919 UPF0004: Uncharacteri 21.3 2.1E+02 0.0046 17.6 4.8 42 54-102 54-98 (98)
207 KOG0781 Signal recognition par 21.0 4.9E+02 0.011 21.7 7.2 64 51-120 451-517 (587)
208 PF06576 DUF1133: Protein of u 21.0 2.9E+02 0.0063 19.2 4.5 46 51-110 56-104 (176)
209 PF01380 SIS: SIS domain SIS d 21.0 79 0.0017 19.8 1.9 23 122-144 72-94 (131)
210 PRK02113 putative hydrolase; P 20.8 1.2E+02 0.0026 21.9 2.9 46 90-138 177-222 (252)
211 TIGR01515 branching_enzym alph 20.8 1.4E+02 0.0029 25.2 3.6 23 52-74 205-227 (613)
212 PF03102 NeuB: NeuB family; I 20.8 3.5E+02 0.0076 19.8 6.9 49 50-108 53-101 (241)
213 PRK13396 3-deoxy-7-phosphohept 20.7 4.2E+02 0.0091 20.8 7.6 79 51-140 150-246 (352)
214 PRK05402 glycogen branching en 20.7 1.4E+02 0.0029 25.8 3.6 23 52-74 314-336 (726)
215 PF01172 SBDS: Shwachman-Bodia 20.4 58 0.0013 19.9 1.1 26 102-130 54-79 (91)
216 PF02428 Prot_inhib_II: Potato 20.3 95 0.0021 17.0 1.7 16 138-153 34-49 (52)
217 PF01118 Semialdhyde_dh: Semia 20.2 1.7E+02 0.0036 18.5 3.3 41 33-74 56-97 (121)
218 TIGR02100 glgX_debranch glycog 20.1 1.4E+02 0.003 25.6 3.5 24 52-75 244-267 (688)
219 PRK02412 aroD 3-dehydroquinate 20.1 3.6E+02 0.0078 19.7 10.2 79 53-144 122-211 (253)
220 PRK10933 trehalose-6-phosphate 20.1 1.4E+02 0.0029 24.8 3.4 24 52-75 80-103 (551)
221 COG3867 Arabinogalactan endo-1 20.0 1.8E+02 0.0039 22.5 3.7 32 51-83 102-133 (403)
No 1
>PLN02967 kinase
Probab=99.90 E-value=2.2e-22 Score=159.63 Aligned_cols=148 Identities=28% Similarity=0.477 Sum_probs=118.9
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--------CchhhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--------LLKPRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--------~~~~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+|++++|.++++|+|+++ ++.++|+..+.+++++...+.++++ +.+...+++..+++.+++.|++|+||+
T Consensus 295 ~~Tgla~V~vd~~Gerr~~-~~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDp 373 (581)
T PLN02967 295 RATAVSTMKIAKRGRLKTT-CVKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDL 373 (581)
T ss_pred CCCcEEEEEECCCCceEEE-EecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEEC
Confidence 4799999999999998886 4335788888888888777777776 234456788899999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCc--------------hHHHHHHHHhCCCcEEEEeec
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASD--------------DNVVLEKLFHSNLKLLLVTEG 139 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~--------------~~~~~~~l~~~g~~~vvit~G 139 (156)
|+|+.+|.+.+.+.+.+.++++++|||++|++|+..|+|..+.++ ....+..++..|++.||||+|
T Consensus 374 NlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG 453 (581)
T PLN02967 374 NLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNG 453 (581)
T ss_pred CCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEEC
Confidence 999999976666777889999999999999999999998542110 001235566679999999999
Q ss_pred CCceEEEecCe
Q 040166 140 SNGCKYYTQEF 150 (156)
Q Consensus 140 ~~G~~~~~~~~ 150 (156)
++|+++++++.
T Consensus 454 ~~Ga~~~~~~~ 464 (581)
T PLN02967 454 TSKIHYYTKEH 464 (581)
T ss_pred ccceEEEECCC
Confidence 99999988653
No 2
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.89 E-value=3.1e-22 Score=157.03 Aligned_cols=147 Identities=28% Similarity=0.416 Sum_probs=116.3
Q ss_pred CcceEEEEEee-CCCceeeeeecCCccccccccccCChhhhhcCCc--------CchhhHHHHHHHHHHHHHcCCeEEEe
Q 040166 2 QGLHWLFVTLT-AEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--------LLKPRRSAHIAAMEMAKTSGCILSYD 72 (156)
Q Consensus 2 ~~t~~~~v~~~-~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--------~~~~~~~~~~~~~~~a~~~g~~i~~D 72 (156)
.+|++++|.++ .++.|.+++++.++++..+.+++++.+++.++++ ..+..++.+..+++.+++.|++|+||
T Consensus 224 ~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfD 303 (496)
T PLN02543 224 AKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNLAVLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFD 303 (496)
T ss_pred CCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCHhHhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEe
Confidence 46999999985 2333667655555777888999998778888887 12444678889999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--------CCCc-----------------hHHHHHHHH
Q 040166 73 PNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--------DASD-----------------DNVVLEKLF 127 (156)
Q Consensus 73 ~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--------~~~~-----------------~~~~~~~l~ 127 (156)
+|+|+.+|.+.+...+.+.++++++||+++|++|+..++|.. +++. ....+..++
T Consensus 304 pN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 383 (496)
T PLN02543 304 LNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEEIAPLW 383 (496)
T ss_pred CCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhhhhhcccccccCCHHHHHHHH
Confidence 999999998777777889999999999999999999999853 1110 001124566
Q ss_pred hCCCcEEEEeecCCceEEEec
Q 040166 128 HSNLKLLLVTEGSNGCKYYTQ 148 (156)
Q Consensus 128 ~~g~~~vvit~G~~G~~~~~~ 148 (156)
..|++.||||+|++|++++++
T Consensus 384 ~~g~~~VVVT~G~~Ga~~~t~ 404 (496)
T PLN02543 384 HDGLKLLLVTDGTLRIHYYTP 404 (496)
T ss_pred HCCCCEEEEEcCCCcEEEEEC
Confidence 679999999999999999875
No 3
>PLN02323 probable fructokinase
Probab=99.88 E-value=3.3e-21 Score=145.50 Aligned_cols=153 Identities=63% Similarity=1.045 Sum_probs=121.5
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--------CchhhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--------LLKPRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--------~~~~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+|+.+++.++++|+|++.++++++++..+++++++.+++..+++ +.......+..+++.+++.|++++||+
T Consensus 95 ~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 174 (330)
T PLN02323 95 ARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDP 174 (330)
T ss_pred CCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcC
Confidence 468999999988999999998765676677888887767777765 122334556788899999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeE
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGH 153 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~ 153 (156)
++|+..|.+.+..++.+.++++++|++++|++|+..++|..+.+... + .+++..|++.||||+|++|++++++++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~-~-~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~ 252 (330)
T PLN02323 175 NLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDT-V-VKLWHPNLKLLLVTEGEEGCRYYTKDFKGR 252 (330)
T ss_pred CCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHH-H-HHHHhcCCCEEEEecCCCceEEEeCCCceE
Confidence 99988897666677788899999999999999999999875443211 1 244457899999999999999998776667
Q ss_pred eCC
Q 040166 154 VGG 156 (156)
Q Consensus 154 ~p~ 156 (156)
+|+
T Consensus 253 ~~~ 255 (330)
T PLN02323 253 VEG 255 (330)
T ss_pred eCC
Confidence 764
No 4
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.86 E-value=1e-20 Score=146.69 Aligned_cols=136 Identities=19% Similarity=0.199 Sum_probs=109.2
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--C---------chhhHHHHHHHHHHHHHcCCeEEE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--L---------LKPRRSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~---------~~~~~~~~~~~~~~a~~~g~~i~~ 71 (156)
+||.++|+++++|+|+|++|+ +++..+++++++.+.+.++++ + .+...+++..+++.|++.|++|+|
T Consensus 148 ~TG~~~VlV~~dGeRt~~t~~--GA~~~Lt~edld~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~Vsl 225 (434)
T PRK15074 148 PIGRCFTLISEDGERTFAISP--GHMNQLRPESIPEDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVL 225 (434)
T ss_pred CCEEEEEEECCCCCEEEEEec--ChhhcCChhHCCHhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 699999999999999999997 578889999998888888887 1 113467788999999999999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEe
Q 040166 72 DPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 72 D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~ 147 (156)
|++.++..|...+.+ ...+++++|++++|++|+..++|..+++++ ++.+.+ +++.||||+|++|++++.
T Consensus 226 D~s~~~~v~~~~~~~---~e~l~~~vDILf~NeeEa~~LtG~~d~eea---~~~L~~-~~~~VVVTlG~~Ga~v~~ 294 (434)
T PRK15074 226 TLGTKFVIEDNPQWW---QEFLKEHVSILAMNEDEAEALTGESDPLLA---SDKALD-WVDLVLCTAGPIGLYMAG 294 (434)
T ss_pred ECcchhhccccHHHH---HHHHHhcCCEEEcCHHHHHHHhCCCCHHHH---HHHHHc-CCCEEEEEECCCCEEEEe
Confidence 999875444322222 234567999999999999999997776654 356654 578999999999999975
No 5
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.85 E-value=2.6e-20 Score=139.07 Aligned_cols=150 Identities=31% Similarity=0.424 Sum_probs=118.2
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--------CchhhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--------LLKPRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--------~~~~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+|+.+++.++++|+|+|.++..++++..++.++++ .+.+.++ ..+..++...++++.+++.|..++||+
T Consensus 80 ~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~ 157 (304)
T PRK09434 80 HRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDP 157 (304)
T ss_pred CCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECC
Confidence 468999999888899998877765665555555553 2333443 234455667788999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHh-CCCcEEEEeecCCceEEEecCeee
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFH-SNLKLLLVTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~-~g~~~vvit~G~~G~~~~~~~~~~ 152 (156)
++|+..|...+...+.++++++++|++++|++|+..++|..+.+++ ++++.+ .|++.||||+|++|++++++++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~~~~~---~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~ 234 (304)
T PRK09434 158 NLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQLEDA---IYALADRYPIALLLVTLGAEGVLVHTRGQVQ 234 (304)
T ss_pred CCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCCHHHH---HHHHHhhcCCcEEEEEecCCceEEEeCCcee
Confidence 9998889766667788889999999999999999999997665543 477765 688999999999999999888777
Q ss_pred EeCC
Q 040166 153 HVGG 156 (156)
Q Consensus 153 ~~p~ 156 (156)
++|+
T Consensus 235 ~~~~ 238 (304)
T PRK09434 235 HFPA 238 (304)
T ss_pred EeCC
Confidence 7764
No 6
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.85 E-value=1.1e-19 Score=134.89 Aligned_cols=153 Identities=29% Similarity=0.372 Sum_probs=119.8
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--Cc-------hhhHHHHHHHHHHHHHcCCeEEEe
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LL-------KPRRSAHIAAMEMAKTSGCILSYD 72 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~-------~~~~~~~~~~~~~a~~~g~~i~~D 72 (156)
++|+.+++.++++|+|+++++++.++...++.++++...+.++++ +. +...+.+..+++.+++.|+++++|
T Consensus 83 ~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D 162 (294)
T cd01166 83 RPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFD 162 (294)
T ss_pred CcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEEC
Confidence 579999999988899999999765666777777777667778876 22 222467888899999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeee
Q 040166 73 PNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 73 ~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~ 152 (156)
++.++.+|. .+...+.++++++++|++++|+.|+..+++....++..+.++++ +.|.+.|+||+|++|++++++++.+
T Consensus 163 ~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l-~~g~~~viit~G~~G~~~~~~~~~~ 240 (294)
T cd01166 163 LNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERALAL-ALGVKAVVVKLGAEGALVYTGGGRV 240 (294)
T ss_pred CCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHHHHHhh-cCCccEEEEEEcCCceEEEECCceE
Confidence 998776664 34455667889999999999999999999875544443333444 5799999999999999999887777
Q ss_pred EeCC
Q 040166 153 HVGG 156 (156)
Q Consensus 153 ~~p~ 156 (156)
++|+
T Consensus 241 ~~~~ 244 (294)
T cd01166 241 FVPA 244 (294)
T ss_pred EeCC
Confidence 7764
No 7
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.84 E-value=1.9e-19 Score=133.70 Aligned_cols=151 Identities=40% Similarity=0.634 Sum_probs=115.9
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--C------chhhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--L------LKPRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~------~~~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+|+.+++.++++|+|++.++++......+..+ +..+.++++++ + ++...+.+.++++.+++.|+++++|+
T Consensus 80 ~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~ 158 (295)
T cd01167 80 APTTLAFVTLDADGERSFEFYRGPAADLLLDTE-LNPDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDP 158 (295)
T ss_pred CCceEEEEEECCCCCEeEEeecCCcHhhhcCcc-CChhHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEEEcC
Confidence 378999999988899999988753322222221 33455666665 1 23345677889999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeE
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGH 153 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~ 153 (156)
+.++.+|.......+.++++++++|++++|+.|+..+++..+.+++ ++.+++.|++.+|||+|++|++++++++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~---~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~ 235 (295)
T cd01167 159 NLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPEEI---AALLLLFGLKLVLVTRGADGALLYTKGGVGE 235 (295)
T ss_pred CCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHHHH---HHHHhhcCCCEEEEecCCcceEEEECCccee
Confidence 9888788655555677889999999999999999999987655443 3667778999999999999999998887777
Q ss_pred eCC
Q 040166 154 VGG 156 (156)
Q Consensus 154 ~p~ 156 (156)
+|+
T Consensus 236 ~~a 238 (295)
T cd01167 236 VPG 238 (295)
T ss_pred eCC
Confidence 774
No 8
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.82 E-value=7.4e-19 Score=131.73 Aligned_cols=148 Identities=22% Similarity=0.220 Sum_probs=115.2
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--Cch----hhHHHHHHHHHHHHHcCCeEEEecCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLK----PRRSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~----~~~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+|+.+++.++++|+|+++.++ +++..+++++++.+.+.++++ ++. ...+.+..+++.+++.|++++||++.
T Consensus 106 ~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~ 183 (312)
T cd01168 106 GPTGTCAVLVTPDAERTMCTYL--GAANELSPDDLDWSLLAKAKYLYLEGYLLTVPPEAILLAAEHAKENGVKIALNLSA 183 (312)
T ss_pred CCceEEEEEEcCCCceeeeccc--chhhcCChhHCCHHHHccCCEEEEEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCc
Confidence 4799999999989999998776 566778888888777888887 221 12377888999999999999999973
Q ss_pred CCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeC
Q 040166 76 RLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVG 155 (156)
Q Consensus 76 r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p 155 (156)
. | ....+++.+.++++++|++++|++|+..+++.+ .++..+.++.+++.|++.||||+|++|++++++++.+++|
T Consensus 184 ~---~-~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~-~~~~~~~a~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~ 258 (312)
T cd01168 184 P---F-IVQRFKEALLELLPYVDILFGNEEEAEALAEAE-TTDDLEAALKLLALRCRIVVITQGAKGAVVVEGGEVYPVP 258 (312)
T ss_pred H---H-HHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCC-CCChHHHHHHHHhcCCCEEEEecCCCCeEEEECCEEEeCC
Confidence 1 1 122344567889999999999999999999851 1122223577888899999999999999999888777777
Q ss_pred C
Q 040166 156 G 156 (156)
Q Consensus 156 ~ 156 (156)
+
T Consensus 259 ~ 259 (312)
T cd01168 259 A 259 (312)
T ss_pred C
Confidence 4
No 9
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.1e-18 Score=130.62 Aligned_cols=140 Identities=30% Similarity=0.433 Sum_probs=113.8
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--C----chhhHHHHHHHHHHHHHcCCeEEEecCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--L----LKPRRSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~----~~~~~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+|+.+++.++++|+|.|.++++. +...+.++++++..+...+. + .....+.+..+++.+++.|..+++|+|+
T Consensus 89 ~~tg~~~i~~~~~g~r~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~ 167 (311)
T COG0524 89 ATTGLALILVDEDGERTFVFYRGA-AALLLTPEDLDEDELAGADVLHISGIQLEIPPEALLAALELAKAAGVTVSFDLNP 167 (311)
T ss_pred CcceEEEEEEcCCCceeEEEECCc-ccccCChHHcChHHHhhcCeeeEEEeecCCChHHHHHHHHHHHHcCCeEEEecCC
Confidence 378999999998999999999975 67778888887666666665 1 1111278889999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC-CCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCe
Q 040166 76 RLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEG-CDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEF 150 (156)
Q Consensus 76 r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~-~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~ 150 (156)
|+..|. .+.+.++++++|++++|++|+..++|. .+...+ ...++..|++.+|+|+|++|+++++.+.
T Consensus 168 ~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~---~~~~~~~~~~~vvvt~G~~Ga~~~~~~~ 235 (311)
T COG0524 168 RPALWD-----RELLEELLALADILFPNEEEAELLTGLEEDAEAA---AALLLAKGVKTVVVTLGAEGAVVFTGGG 235 (311)
T ss_pred Cccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCCCccHHHH---HHHHhhcCCCEEEEEeCCCcEEEEeCCC
Confidence 999885 456889999999999999999999996 333322 2456678999999999999999999754
No 10
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.79 E-value=5.4e-18 Score=133.41 Aligned_cols=151 Identities=17% Similarity=0.121 Sum_probs=109.6
Q ss_pred cceEEEEEeeCCCceeeeeecCCc---cccccc-cccCChhhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeEEE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPS---AEMLLC-EAELDVNLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~---a~~~l~-~~~i~~~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i~~ 71 (156)
+|+.++++++++|+|.++.+.+.. ....+. ......+++.++++ ++ ....+.+..+++.+++.|++|+|
T Consensus 180 ~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~ 259 (470)
T PLN02341 180 ETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFF 259 (470)
T ss_pred CceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 589999999988998765432111 101110 00111245677776 22 23467788899999999999999
Q ss_pred ecCCCC-CCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCC--CcEEEEeecCCceEEEec
Q 040166 72 DPNARL-LPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSN--LKLLLVTEGSNGCKYYTQ 148 (156)
Q Consensus 72 D~~~r~-~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g--~~~vvit~G~~G~~~~~~ 148 (156)
|+++++ .+|.+.+...+.++++++++|++++|++|+..++|..+.+++ ++.++..| .+.||||+|++|++++++
T Consensus 260 Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~~~a---~~~l~~~g~~~k~VVVTlG~~Ga~~~~~ 336 (470)
T PLN02341 260 DPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNPILA---GQELLRPGIRTKWVVVKMGSKGSILVTR 336 (470)
T ss_pred eCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCHHHH---HHHHHhcCCCCCEEEEeeCCCCeEEEEC
Confidence 999875 355544445566889999999999999999999998666554 46676666 579999999999999998
Q ss_pred CeeeEeCC
Q 040166 149 EFKGHVGG 156 (156)
Q Consensus 149 ~~~~~~p~ 156 (156)
++.+++|+
T Consensus 337 ~~~~~vpa 344 (470)
T PLN02341 337 SSVSCAPA 344 (470)
T ss_pred CeeEEeCC
Confidence 87777774
No 11
>PTZ00292 ribokinase; Provisional
Probab=99.79 E-value=3.7e-18 Score=128.69 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=112.0
Q ss_pred CcceEEEEEee-CCCceeeeeecCCccccccccccCCh--hhhhc-CCc--C-chhhHHHHHHHHHHHHHcCCeEEEecC
Q 040166 2 QGLHWLFVTLT-AEGERGFMFFRNPSAEMLLCEAELDV--NLIEK-ASI--L-LKPRRSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 2 ~~t~~~~v~~~-~~g~r~~~~~~~~~a~~~l~~~~i~~--~~l~~-~~~--~-~~~~~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+|+.+++.++ ++|+|++++++ +++..+++++++. ..+.. +++ + ...+.+.+.++++.+++.|++++||++
T Consensus 104 ~~t~~~~~~~~~~~g~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 181 (326)
T PTZ00292 104 SSTGLAMIFVDTKTGNNEIVIIP--GANNALTPQMVDAQTDNIQNICKYLICQNEIPLETTLDALKEAKERGCYTVFNPA 181 (326)
T ss_pred CCCcEEEEEEeCCCCceEEEEeC--CccccCCHHHHHHHHHHhhhhCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 46899999998 78999999886 4666677776653 33455 666 2 233456677888999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCe-e
Q 040166 75 ARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEF-K 151 (156)
Q Consensus 75 ~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~-~ 151 (156)
.++..|. .+.++++++++|++++|++|+..++|.. +.+++.++++.+++.|++.||||+|++|++++++++ .
T Consensus 182 ~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~ 256 (326)
T PTZ00292 182 PAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVIITLGANGCLIVEKENEP 256 (326)
T ss_pred CCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCce
Confidence 8765553 1457888999999999999999999853 333333345667778999999999999999988664 3
Q ss_pred eEeCC
Q 040166 152 GHVGG 156 (156)
Q Consensus 152 ~~~p~ 156 (156)
+++|+
T Consensus 257 ~~~~~ 261 (326)
T PTZ00292 257 VHVPG 261 (326)
T ss_pred EEccC
Confidence 66664
No 12
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.79 E-value=3.3e-18 Score=130.92 Aligned_cols=145 Identities=20% Similarity=0.154 Sum_probs=111.1
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--Cc--hhhHHHHHHHHHHHHHcCCeEEEecCCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LL--KPRRSAHIAAMEMAKTSGCILSYDPNARL 77 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~--~~~~~~~~~~~~~a~~~g~~i~~D~~~r~ 77 (156)
.+|+.++++++++|+|++.++. ++...++++++..+.++++++ +. ....+.+.++++.+++.|+++++|++...
T Consensus 138 ~~Tg~~~v~v~~dgert~~~~l--g~~~~l~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~ 215 (367)
T PLN02379 138 GPTAQCVCLVDALGNRTMRPCL--SSAVKLQADELTKEDFKGSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFE 215 (367)
T ss_pred CCCceEEEEECCCCCccccCCc--cccccCChhHCCHHHHhcCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchh
Confidence 3799999999999999998775 456677888888778888887 22 12357788999999999999999997421
Q ss_pred CCCCCHHHHHHHHHHhhh--hCcEEecCHHHHhHhhCCC---CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeee
Q 040166 78 LPWPSAEAARGGIISIWD--EADMIKISEEELTLLIEGC---DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g~~---~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~ 152 (156)
....+++.+.++++ ++|++++|++|+..+++.. +.+++ .+++..+++.+|||+|++|++++++++.+
T Consensus 216 ----~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~~~~~~~----~~~l~~~~~~vvvT~G~~Ga~~~~~~~~~ 287 (367)
T PLN02379 216 ----MVRNFRSPLLQLLESGKIDLCFANEDEARELLRGEQESDPEAA----LEFLAKYCNWAVVTLGSKGCIARHGKEVV 287 (367)
T ss_pred ----hhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCCCCHHHH----HHHHHhcCCEEEEEECCCCeEEEECCEEE
Confidence 01234556677775 8999999999999999742 33332 34445688999999999999999988777
Q ss_pred EeCC
Q 040166 153 HVGG 156 (156)
Q Consensus 153 ~~p~ 156 (156)
++|+
T Consensus 288 ~v~a 291 (367)
T PLN02379 288 RVPA 291 (367)
T ss_pred EecC
Confidence 7764
No 13
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.79 E-value=1.8e-17 Score=128.94 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=109.7
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--Cc------hhhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LL------KPRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~------~~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+||.++++++++|+|++++|+ +++..++.+++..+.++++++ +. +...+.+.++++.+++.|++++||+
T Consensus 185 ~~Tg~~~ilv~~~gertii~~~--Ga~~~l~~~~~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~ 262 (426)
T PLN02813 185 GTTGTVIVLTTPDAQRTMLSYQ--GTSSTVNYDSCLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTA 262 (426)
T ss_pred CCceEEEEEEcCCCCceeeecc--CchhhCCccccCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEEC
Confidence 3799999999999999999998 456667777776677888887 21 2334678889999999999999998
Q ss_pred CCCCCCCCCHHHHHHH-HHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeee
Q 040166 74 NARLLPWPSAEAARGG-IISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~-l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~ 152 (156)
+.-. . ....++. ...+++++|++++|++|+..++|..+.++..++++.+ ..+++.||||+|++|+++.++++.+
T Consensus 263 s~~~-~---~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~~~~~~~~a~~~L-~~~~~~VVVT~G~~Ga~~~~~~~~~ 337 (426)
T PLN02813 263 SDVS-C---IERHRDDFWDVMGNYADILFANSDEARALCGLGSEESPESATRYL-SHFCPLVSVTDGARGSYIGVKGEAV 337 (426)
T ss_pred CCcc-h---hhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCCCCCCHHHHHHHH-HcCCCEEEEEeCCCCeEEEECCEEE
Confidence 6310 0 1112222 3455689999999999999999863322222233445 4688999999999999998888888
Q ss_pred EeCC
Q 040166 153 HVGG 156 (156)
Q Consensus 153 ~~p~ 156 (156)
++|+
T Consensus 338 ~~pa 341 (426)
T PLN02813 338 YIPP 341 (426)
T ss_pred EeCC
Confidence 8875
No 14
>PTZ00247 adenosine kinase; Provisional
Probab=99.78 E-value=5e-18 Score=129.01 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=108.5
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCCh----hhhhcCCc--Cch----hhHHHHHHHHHHHHHcCCeEEE
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV----NLIEKASI--LLK----PRRSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~----~~l~~~~~--~~~----~~~~~~~~~~~~a~~~g~~i~~ 71 (156)
++||.+++++++ |+|+++.++ +++..+++++++. +.+.++++ +.. .+.+.+..+++.+++.|+++++
T Consensus 117 ~~Tg~~~i~v~~-~~r~~~~~~--ga~~~l~~~~i~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~ 193 (345)
T PTZ00247 117 APTGTCAVLVCG-KERSLVANL--GAANHLSAEHMQSHAVQEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCL 193 (345)
T ss_pred CCcEEEEEEEcC-CCcccccCc--chhhcCChHHcCcHHHHHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEE
Confidence 479999999874 899998877 5777888888764 36778887 221 2457788999999999999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC-----CCCCchHHHHHHHHh------CCCcEEEEeecC
Q 040166 72 DPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEG-----CDASDDNVVLEKLFH------SNLKLLLVTEGS 140 (156)
Q Consensus 72 D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~-----~~~~~~~~~~~~l~~------~g~~~vvit~G~ 140 (156)
|++.. .| .....+.+.++++++|++++|++|+..++|. ++.+++ ++.+.+ .+.+.||||+|+
T Consensus 194 d~~~~--~~--~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~vvvT~G~ 266 (345)
T PTZ00247 194 NLSAP--FI--SQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEI---AARIAMLPKYSGTRPRLVVFTQGP 266 (345)
T ss_pred ECCcH--HH--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCHHHH---HHHHHhccccccCCCCEEEEecCC
Confidence 98631 11 1223355788999999999999999999983 233333 344442 257899999999
Q ss_pred CceEEEecCeeeEeCC
Q 040166 141 NGCKYYTQEFKGHVGG 156 (156)
Q Consensus 141 ~G~~~~~~~~~~~~p~ 156 (156)
+|++++++++..++|+
T Consensus 267 ~G~~~~~~~~~~~~~~ 282 (345)
T PTZ00247 267 EPTLIATKDGVTSVPV 282 (345)
T ss_pred CceEEEECCEEEEEec
Confidence 9999999887666653
No 15
>PRK11142 ribokinase; Provisional
Probab=99.77 E-value=9.9e-18 Score=125.19 Aligned_cols=143 Identities=21% Similarity=0.216 Sum_probs=108.6
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCCh--hhhhcCCc--Cc-hhhHHHHHHHHHHHHHcCCeEEEecCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV--NLIEKASI--LL-KPRRSAHIAAMEMAKTSGCILSYDPNAR 76 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~--~~l~~~~~--~~-~~~~~~~~~~~~~a~~~g~~i~~D~~~r 76 (156)
.+|+.+++.++++|+|++.+++ +++..+++++++. +.+..+++ +. ....+.+.++++.+++.|++++||++..
T Consensus 91 ~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~ 168 (306)
T PRK11142 91 ESTGVALIFVNDEGENSIGIHA--GANAALTPALVEAHRELIANADALLMQLETPLETVLAAAKIAKQHGTKVILNPAPA 168 (306)
T ss_pred CCCCEEEEEECCCCCEEEEEeC--CccccCCHHHHHHHHhhhccCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 4699999999888999998887 4566677766642 45677777 22 2345667788999999999999999854
Q ss_pred CCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEe
Q 040166 77 LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHV 154 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~ 154 (156)
..+ ..++++++|++++|++|+..++|.. +.++...+++.+.+.|++.||||+|++|++++++++.+++
T Consensus 169 ~~~----------~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~ 238 (306)
T PRK11142 169 REL----------PDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRV 238 (306)
T ss_pred ccc----------CHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCCcceec
Confidence 321 2467899999999999999999853 3333333456677789999999999999999887776777
Q ss_pred CC
Q 040166 155 GG 156 (156)
Q Consensus 155 p~ 156 (156)
|+
T Consensus 239 ~~ 240 (306)
T PRK11142 239 PG 240 (306)
T ss_pred cC
Confidence 64
No 16
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.77 E-value=2.4e-17 Score=122.29 Aligned_cols=146 Identities=17% Similarity=0.229 Sum_probs=104.5
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc-------Cc-hh-hHHHHHHHHHHHHHcCCeEEEe
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI-------LL-KP-RRSAHIAAMEMAKTSGCILSYD 72 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~-------~~-~~-~~~~~~~~~~~a~~~g~~i~~D 72 (156)
.+|+.++++++++|+|+++++++ ++..+++++++...+..+++ +. .. ..+.+.++++..+ .|++++||
T Consensus 86 ~~t~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D 162 (289)
T cd01944 86 DDGGCLVALVEPDGERSFISISG--AEQDWSTEWFATLTVAPYDYVYLSGYTLASENASKVILLEWLEALP-AGTTLVFD 162 (289)
T ss_pred CCCeEEEEEEcCCCceEEEEeCC--ccCCCCHHHhccccCCCCCEEEEeCccccCcchhHHHHHHHHHhcc-CCCEEEEc
Confidence 46788888888889999988874 45555655554323444444 11 11 3455566666543 57999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEe-cCee
Q 040166 73 PNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYT-QEFK 151 (156)
Q Consensus 73 ~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~-~~~~ 151 (156)
+++|+..|. .+.++++++++|++++|++|+..++|..+.+.. ..++++.+.|++.||||+|++|+++++ +++.
T Consensus 163 ~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~-~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~ 236 (289)
T cd01944 163 PGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPAAE-ASALRIYAKTAAPVVVRLGSNGAWIRLPDGNT 236 (289)
T ss_pred CcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcchH-HHHHHHHhccCCeEEEEECCCcEEEEecCCCe
Confidence 999877664 135788899999999999999999997544332 224667778889999999999999988 4555
Q ss_pred eEeCC
Q 040166 152 GHVGG 156 (156)
Q Consensus 152 ~~~p~ 156 (156)
+++|+
T Consensus 237 ~~~~~ 241 (289)
T cd01944 237 HIIPG 241 (289)
T ss_pred EEecC
Confidence 66663
No 17
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.77 E-value=2.4e-17 Score=122.30 Aligned_cols=143 Identities=21% Similarity=0.218 Sum_probs=108.2
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCCh--hhhhcCCc--Cc-hhhHHHHHHHHHHHHHcCCeEEEecCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV--NLIEKASI--LL-KPRRSAHIAAMEMAKTSGCILSYDPNAR 76 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~--~~l~~~~~--~~-~~~~~~~~~~~~~a~~~g~~i~~D~~~r 76 (156)
.+|+.+++.++++|+|+++++++ ++..+++++++. +.+..+++ +. ....+.+..+++.+++.|++++||++.+
T Consensus 88 ~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 165 (292)
T cd01174 88 APTGTAVITVDESGENRIVVVPG--ANGELTPADVDAALELIAAADVLLLQLEIPLETVLAALRAARRAGVTVILNPAPA 165 (292)
T ss_pred CCceeEEEEEcCCCceEEEEeCC--CCCCCCHHHHHHHHHhcccCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEeCCCc
Confidence 46999999998889999998873 555555555543 45667776 32 3345677888999999999999999754
Q ss_pred CCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCC--CchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEe
Q 040166 77 LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDA--SDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHV 154 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~--~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~ 154 (156)
... .+++++++|++++|++|+..+++.... ++..++++.+.+.|++.||||+|++|++++++++..++
T Consensus 166 ~~~----------~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~ 235 (292)
T cd01174 166 RPL----------PAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHV 235 (292)
T ss_pred CcC----------cHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCceEEEeCCceEEe
Confidence 321 257789999999999999999986432 22333457777789999999999999999987776666
Q ss_pred CC
Q 040166 155 GG 156 (156)
Q Consensus 155 p~ 156 (156)
|+
T Consensus 236 ~~ 237 (292)
T cd01174 236 PA 237 (292)
T ss_pred cC
Confidence 63
No 18
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.72 E-value=3.5e-16 Score=116.18 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=108.3
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCC--hhhhhcCCc--Cc-hhhHHHHHHHHHHHHHcCCeEEEecCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELD--VNLIEKASI--LL-KPRRSAHIAAMEMAKTSGCILSYDPNAR 76 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~--~~~l~~~~~--~~-~~~~~~~~~~~~~a~~~g~~i~~D~~~r 76 (156)
.+|+.+++.++++|+|++++++ +++..+++++++ .+.+..+++ ++ ....+.+.++++.+++.|+++++|++..
T Consensus 83 ~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 160 (293)
T TIGR02152 83 TPTGTAFITVDDTGENRIVVVA--GANAELTPEDIDAAEALIAESDIVLLQLEIPLETVLEAAKIAKKHGVKVILNPAPA 160 (293)
T ss_pred CCCceEEEEEcCCCCEEEEEEC--CcCCcCCHHHHHHHHhhhccCCEEEEecCCCHHHHHHHHHHHHHcCCEEEEECCcC
Confidence 4699999999888999998876 455566766665 245667776 22 3345677888999999999999999743
Q ss_pred CCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEe
Q 040166 77 LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHV 154 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~ 154 (156)
.. ....++++++|++++|++|+..+++.. +.++..+.++.+.+.|++.||||+|++|++++++++.+++
T Consensus 161 ~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~ 231 (293)
T TIGR02152 161 IK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKDESKLI 231 (293)
T ss_pred cc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeCCceeEc
Confidence 11 012567899999999999999999864 3333333457777789999999999999999988876666
Q ss_pred CC
Q 040166 155 GG 156 (156)
Q Consensus 155 p~ 156 (156)
|+
T Consensus 232 ~~ 233 (293)
T TIGR02152 232 PA 233 (293)
T ss_pred cC
Confidence 53
No 19
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.71 E-value=2.4e-16 Score=119.05 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=105.4
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--C-chh--hHHHHHHHHHHHHH------cCCeEE
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--L-LKP--RRSAHIAAMEMAKT------SGCILS 70 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~-~~~--~~~~~~~~~~~a~~------~g~~i~ 70 (156)
.+|+.+++.++++|+|.+++++ +++..+.+++++...+..+++ + ... .++...++++.+++ .|..++
T Consensus 81 ~~Tg~~~v~~~~~g~r~~~~~~--~~~~~~~~~~l~~~~~~~a~~~hl~~~~~~~~~~~~~~~~~a~~~~~d~~~g~~~~ 158 (328)
T cd01943 81 RLTTRGLNIYDGNDRRFFKYLT--PKKRIDVSDDLNSTPLIRSSCIHLICSPERCASIVDDIINLFKLLKGNSPTRPKIV 158 (328)
T ss_pred CcchhhhhhcCCCCcceeeecC--cccccccccccccccccCCCeEEEECCHHHHHHHHHHHHHHHHhhccccCCccEEE
Confidence 4699999998888888877775 355677888887666667776 3 222 23678888898888 888999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCch-----HH-----HHHHHHhCCCcEEEEeecC
Q 040166 71 YDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDD-----NV-----VLEKLFHSNLKLLLVTEGS 140 (156)
Q Consensus 71 ~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~-----~~-----~~~~l~~~g~~~vvit~G~ 140 (156)
+|++.. .+. ....+.+.++++++|++++|++|+..++|..+..+. .. .+..+...|.+.||||+|+
T Consensus 159 ~d~~~~--~~~--~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~ 234 (328)
T cd01943 159 WEPLPD--SCD--PENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGK 234 (328)
T ss_pred EecCCc--ccC--hhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCC
Confidence 998732 111 112345789999999999999999999997543211 10 0012234688999999999
Q ss_pred CceEEEe--cCeeeEeCC
Q 040166 141 NGCKYYT--QEFKGHVGG 156 (156)
Q Consensus 141 ~G~~~~~--~~~~~~~p~ 156 (156)
+|+++++ +++.+++|+
T Consensus 235 ~Ga~~~~~~~~~~~~~p~ 252 (328)
T cd01943 235 LGCYVGSADSGPELWLPA 252 (328)
T ss_pred CCCEEEecCCCceEecCC
Confidence 9999988 445566663
No 20
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.5e-16 Score=116.47 Aligned_cols=149 Identities=43% Similarity=0.721 Sum_probs=118.3
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--------CchhhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--------LLKPRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--------~~~~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+|+++++.+..+|++.+.++++++++..+.+.+++.+.++.+++ .....+......++.+++.|..+++||
T Consensus 98 ~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~p 177 (330)
T KOG2855|consen 98 ARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDP 177 (330)
T ss_pred CceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCC
Confidence 589999999999999999999976666666667778889999987 222333333334667888999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeee-
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKG- 152 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~- 152 (156)
|.|.++|+........+..++..+|++..+++|++.++|..+. ++ . +|++.+.+.||||+|++||.+++.+..-
T Consensus 178 n~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~-~~---~-~L~~~~~k~viVTlG~kG~~y~tk~~~~~ 252 (330)
T KOG2855|consen 178 NLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDD-KI---L-KLWHMKLKLVIVTLGEKGCRYYTKDFKGS 252 (330)
T ss_pred CccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccc-hH---H-HHhccCCCEEEEEeCCCceEEEecCCCCC
Confidence 9999999975555566888899999999999999999988332 32 3 6777778999999999999999876443
Q ss_pred EeC
Q 040166 153 HVG 155 (156)
Q Consensus 153 ~~p 155 (156)
++|
T Consensus 253 ~v~ 255 (330)
T KOG2855|consen 253 HVP 255 (330)
T ss_pred CCC
Confidence 554
No 21
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.69 E-value=5.4e-16 Score=114.31 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=100.7
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLP 79 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~ 79 (156)
.+|+.+++.++++|+|++..++ ++...+.+++ ....+.++++ +... ..+.++++.+++.|+++++|++.+...
T Consensus 88 ~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~v~~D~~~~~~~ 162 (279)
T cd01942 88 DSTGVAFILTDGDDNQIAYFYP--GAMDELEPND-EADPDGLADIVHLSSG--PGLIELARELAAGGITVSFDPGQELPR 162 (279)
T ss_pred CCcceEEEEEcCCCCEEEEecC--CcccccccCC-chhhhcccCEEEeCCc--hHHHHHHHHHHHcCCeEEEcchhhhhh
Confidence 4689999999888888887666 4555566655 4566777777 3322 246677788888899999999987655
Q ss_pred CCCHHHHHHHHHHhhhhCcEEecCHHHHh---HhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeCC
Q 040166 80 WPSAEAARGGIISIWDEADMIKISEEELT---LLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVGG 156 (156)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~dil~~n~~E~~---~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p~ 156 (156)
|. .+.++++++++|++++|++|+. .+++..+. . ...|.+.||+|+|++|++++++++.+++|+
T Consensus 163 ~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~-------~--~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~ 228 (279)
T cd01942 163 LS-----GEELEEILERADILFVNDYEAELLKERTGLSEA-------E--LASGVRVVVVTLGPKGAIVFEDGEEVEVPA 228 (279)
T ss_pred cc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChH-------H--HhcCCCEEEEEECCCceEEEECCceEEccC
Confidence 53 1346788999999999999994 45543221 1 127899999999999999999887777764
No 22
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.69 E-value=1.1e-16 Score=118.97 Aligned_cols=147 Identities=30% Similarity=0.389 Sum_probs=108.8
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--Cc------hhhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LL------KPRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~------~~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+|+.+++.++++|+|++.+++ ++...+..+++....+..+++ ++ ....+....+.+.++..+. +|+
T Consensus 88 ~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 162 (301)
T PF00294_consen 88 EPTGRCLIIVDPDGERTFVFSP--GANSDLTPDELDEEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNGP---FDP 162 (301)
T ss_dssp SEEEEEEEEEETTSEEEEEEEE--GGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTTE---EEE
T ss_pred cccceeEeeecccccceeeecc--ccccccccccccccccccccceeecccccccccccceeeecccccccccc---ccc
Confidence 4799999999988999999887 455556665555556666666 22 2344556666666666553 555
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCee
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFK 151 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~ 151 (156)
++++..|. ..++.+.++++++|++++|++|+..+++.. +.+++.+++.+++..|++.+|+|+|++|++++++++.
T Consensus 163 ~~~~~~~~---~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~ 239 (301)
T PF00294_consen 163 VFRDPSWD---DLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGALYYTNDES 239 (301)
T ss_dssp EEEGGGSH---HHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEE
T ss_pred cccccccc---ccchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhccccccCccccccccc
Confidence 54444442 156778899999999999999999999986 6666655556666789999999999999999998877
Q ss_pred eEeCC
Q 040166 152 GHVGG 156 (156)
Q Consensus 152 ~~~p~ 156 (156)
+++|+
T Consensus 240 ~~~~~ 244 (301)
T PF00294_consen 240 YHVPP 244 (301)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 77653
No 23
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.66 E-value=1.3e-15 Score=112.54 Aligned_cols=138 Identities=18% Similarity=0.153 Sum_probs=103.8
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCC
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPW 80 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~ 80 (156)
+|+.+++ +..+|+|++.++.+ ....+..++++...+.++++ ++....+...++++.+++.|+++++|.+..+ +
T Consensus 89 ~t~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~--~ 163 (284)
T cd01945 89 RSPISSI-TDITGDRATISITA--IDTQAAPDSLPDAILGGADAVLVDGRQPEAALHLAQEARARGIPIPLDLDGGG--L 163 (284)
T ss_pred CCccEEE-EccCCCceEEEecC--CCCCCCcccCCHHHhCcCCEEEEcCCCHHHHHHHHHHHHHcCCCeeEeccCCc--c
Confidence 5777776 45578888877763 34456677777777788888 5554456677889999999998888776432 1
Q ss_pred CCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEe-cCeeeEeCC
Q 040166 81 PSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYT-QEFKGHVGG 156 (156)
Q Consensus 81 ~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~-~~~~~~~p~ 156 (156)
.+ ++++++++|++++|++|+..+++..+. + +++.+.+.|++.||||+|++|+++++ +++.+++|+
T Consensus 164 ------~~-~~~~~~~~dil~~n~~e~~~l~~~~~~-~---~~~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~ 229 (284)
T cd01945 164 ------RV-LEELLPLADHAICSENFLRPNTGSADD-E---ALELLASLGIPFVAVTLGEAGCLWLERDGELFHVPA 229 (284)
T ss_pred ------cc-hHHHhccCCEEEeChhHHhhhcCCCHH-H---HHHHHHhcCCcEEEEEECCCCeEEEcCCCCEEecCC
Confidence 12 678889999999999999999986543 2 24667678999999999999999998 666677764
No 24
>PLN02548 adenosine kinase
Probab=99.66 E-value=6.2e-15 Score=111.46 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=99.9
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCC----hhhhhcCCc--Cc----hhhHHHHHHHHHHHHHcCCeEEE
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELD----VNLIEKASI--LL----KPRRSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~----~~~l~~~~~--~~----~~~~~~~~~~~~~a~~~g~~i~~ 71 (156)
.+|+.+++.++ +|+|++++++ +++..++.+++. .+.+...++ +. ....+.+..+++.+++.|+++.+
T Consensus 106 ~~T~~~~i~~~-~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~ 182 (332)
T PLN02548 106 TPTGTCAVLVV-GGERSLVANL--SAANCYKVEHLKKPENWALVEKAKFYYIAGFFLTVSPESIMLVAEHAAANNKTFMM 182 (332)
T ss_pred CCCceEEEEEe-cCCceeeecc--chhhcCCHHHhcChhhHhHHhhCCEEEEEEEEccCCHHHHHHHHHHHHHcCCEEEE
Confidence 46899999886 7999998776 344445544442 234566666 11 22346677888889999987666
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCC--CchHHHHHHHHh------CCCcEEEEeecCCce
Q 040166 72 DPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDA--SDDNVVLEKLFH------SNLKLLLVTEGSNGC 143 (156)
Q Consensus 72 D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~--~~~~~~~~~l~~------~g~~~vvit~G~~G~ 143 (156)
|+ ++.+|. ....+.++++++++|++++|++|+..++|.... ++..+.++++.+ .+++.||||+|++|+
T Consensus 183 ~~--~~~~~~--~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~ 258 (332)
T PLN02548 183 NL--SAPFIC--EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPT 258 (332)
T ss_pred EC--CChhHH--HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcE
Confidence 55 444553 224466889999999999999999999985211 111112233322 257899999999999
Q ss_pred EEEecCeeeEeC
Q 040166 144 KYYTQEFKGHVG 155 (156)
Q Consensus 144 ~~~~~~~~~~~p 155 (156)
+++++++.+++|
T Consensus 259 ~~~~~~~~~~~p 270 (332)
T PLN02548 259 VVAEDGKVKEFP 270 (332)
T ss_pred EEEECCeEEEec
Confidence 998888776765
No 25
>PRK09850 pseudouridine kinase; Provisional
Probab=99.62 E-value=1e-14 Score=109.55 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=99.0
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCC--hhhhhcCCc--C-chhhHHHHHHHHHHHHHcCCeEEEecCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELD--VNLIEKASI--L-LKPRRSAHIAAMEMAKTSGCILSYDPNAR 76 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~--~~~l~~~~~--~-~~~~~~~~~~~~~~a~~~g~~i~~D~~~r 76 (156)
.+|+.++++++++|+|.+.+++ +++...+..+.++ .+.++++++ + ...+.+.+..+++.+ .|++++||++.
T Consensus 92 ~~T~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~g~~v~~D~~~- 167 (313)
T PRK09850 92 ENTSSYLSLLDNTGEMLVAIND-MNISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNA--ANVPVFVDPVS- 167 (313)
T ss_pred CCceEEEEEecCCCCEEEEecC-chHhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhc--cCCCEEEEcCC-
Confidence 4699999999989999887653 2454455554443 245677777 2 223345555565543 58999999983
Q ss_pred CCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEEec-CeeeE
Q 040166 77 LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQ-EFKGH 153 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~-~~~~~ 153 (156)
.|. ...++++++++|++++|++|+..++|.. +.++..++++.+.+.|++.||||+|++|+++++. ++..+
T Consensus 168 --~~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~ 240 (313)
T PRK09850 168 --AWK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGW 240 (313)
T ss_pred --HHH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEe
Confidence 231 1346788899999999999999999842 2222333456676789999999999999999875 34455
Q ss_pred eC
Q 040166 154 VG 155 (156)
Q Consensus 154 ~p 155 (156)
+|
T Consensus 241 ~~ 242 (313)
T PRK09850 241 SA 242 (313)
T ss_pred cC
Confidence 55
No 26
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.62 E-value=2.9e-14 Score=104.41 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=96.0
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--Cchhh-HHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLKPR-RSAHIAAMEMAKTSGCILSYDPNARLLP 79 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~~~-~~~~~~~~~~a~~~g~~i~~D~~~r~~~ 79 (156)
+|+.+++. .++|+|++.+++. ++.....+.+.+...+.++++ ++... .+.+.++++.+++.|++++||++.+
T Consensus 74 ~t~~~~~~-~~~g~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--- 148 (264)
T cd01940 74 ENAVADVE-LVDGDRIFGLSNK-GGVAREHPFEADLEYLSQFDLVHTGIYSHEGHLEKALQALVGAGALISFDFSDR--- 148 (264)
T ss_pred CCceEEEE-ecCCceEEEeecC-CcHHhcccCcccHhHHhcCCEEEEcccccHHHHHHHHHHHHHcCCEEEEcCccc---
Confidence 57777755 4678999887753 232222232333455677777 33322 4567888999999999999999976
Q ss_pred CCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeCC
Q 040166 80 WPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVGG 156 (156)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p~ 156 (156)
|. . +.+.++++++|++++|++|.. .. +..++++.+++.|++.||||+|++|++++++++.+++|+
T Consensus 149 ~~-~----~~~~~~~~~~d~~~~~~~~~~----~~---~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~ 213 (264)
T cd01940 149 WD-D----DYLQLVCPYVDFAFFSASDLS----DE---EVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAP 213 (264)
T ss_pred CC-H----HHHHhhcccCCEEEechhhcC----cc---hHHHHHHHHHHcCCCEEEEEECCCCeEEEeCCeEEecCC
Confidence 32 1 236778999999999987752 11 222234667778999999999999999998887777764
No 27
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.60 E-value=2.2e-14 Score=106.57 Aligned_cols=140 Identities=10% Similarity=-0.004 Sum_probs=94.9
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--CchhhHHHHHHHHHHHHHcC-------CeEEEec
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLKPRRSAHIAAMEMAKTSG-------CILSYDP 73 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~~~~~~~~~~~~~a~~~g-------~~i~~D~ 73 (156)
+++.++++++++|+|+++++++ +...++.++++...++++++ ++....+....+++.+++.| +++++|+
T Consensus 89 ~~~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 166 (290)
T cd01939 89 EPASSYIIRSRAGGRTTIVNDN--NLPEVTYDDFSKIDLTQYGWIHFEGRNPDETLRMMQHIEEHNNRRPEIRITISVEV 166 (290)
T ss_pred CCeeEEEEEcCCCCeEEEEeCC--CCCCCCHHHHhhhhhccCCEEEEeccCHHHHHHHHHHHHHhcCcCCCcceEEEEEe
Confidence 3555667777789999988874 44566777776555677777 33333344556777777766 6889998
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEec-Ceee
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQ-EFKG 152 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~-~~~~ 152 (156)
+.+. +.+.++++++|++++|++|+..+ +..+.+++... ..+...|++.||||+|++|++++++ ++.+
T Consensus 167 ~~~~----------~~~~~~l~~~di~~~n~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~ 234 (290)
T cd01939 167 EKPR----------EELLELAAYCDVVFVSKDWAQSR-GYKSPEECLRG-EGPRAKKAALLVCTWGDQGAGALGPDGEYV 234 (290)
T ss_pred ccCc----------hhhhhHHhhCCEEEEEhHHHHhc-CcCCHHHHHHh-hhhhccCCcEEEEEcccCCeEEEcCCCCEE
Confidence 7531 12458899999999999988764 65554443211 1222357899999999999998875 4556
Q ss_pred EeCC
Q 040166 153 HVGG 156 (156)
Q Consensus 153 ~~p~ 156 (156)
++|+
T Consensus 235 ~~~~ 238 (290)
T cd01939 235 HSPA 238 (290)
T ss_pred EecC
Confidence 7763
No 28
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.60 E-value=5.3e-14 Score=106.48 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=101.4
Q ss_pred CcceEEEEEeeC-----CCceeeeeecCCccccccccccCChhhhhcCCc--C-chhhHHHHHHHHHHHHH-----cCCe
Q 040166 2 QGLHWLFVTLTA-----EGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--L-LKPRRSAHIAAMEMAKT-----SGCI 68 (156)
Q Consensus 2 ~~t~~~~v~~~~-----~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~-~~~~~~~~~~~~~~a~~-----~g~~ 68 (156)
.+|+.+++.+++ +|+|+++.++ +++..+++++++...++.+.+ + .+...+....+++.++. .|..
T Consensus 78 ~~T~~~~~~~~~g~~~~~~e~~i~~~~--ga~~~l~~~di~~~~~~~~~~~~l~~ei~~e~~~~~~~~a~~v~~D~~g~~ 155 (335)
T PLN02630 78 SKTTEFHADFDQGIDGNGHEDRVLKRV--CACDPIEPSDIPDMRYEFGMAVGVAGEILPETLERMVEICDVVVVDIQALI 155 (335)
T ss_pred CCceEEEEEEcCCcccCCCCeEEEEec--cccCCCChHHCCHHHhcccceeeecCCCcHHHHHHHHHHhhhheeccCceE
Confidence 468999888776 5688887776 688889999987655666655 3 34445778888888887 7999
Q ss_pred EEEecCC-CCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEe
Q 040166 69 LSYDPNA-RLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 69 i~~D~~~-r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~ 147 (156)
++||++. ++.+|...+ ..+.++++++|++++|++|+..+ +.+ .+.+. ..||||+|++|+++++
T Consensus 156 ~~~Dp~~~~~~~~~~~~---~~~~~~L~~iDil~~ne~Ea~~l----~~~-------~~~~~--~~vvvt~G~~G~~~~~ 219 (335)
T PLN02630 156 RVFDPVDGTVKLVKLEE---TGFYDMLPRIGFLKASSEEALFI----DVE-------EVRQK--CCVIVTNGKKGCRIYW 219 (335)
T ss_pred EecCCcccccccchhhH---HHHHHHHHhCCEEEecHHHHhhc----CHH-------HHccC--CEEEEEECCCceEEEE
Confidence 9999986 355563111 23678899999999999999876 221 22222 3799999999999998
Q ss_pred cCeeeEeCC
Q 040166 148 QEFKGHVGG 156 (156)
Q Consensus 148 ~~~~~~~p~ 156 (156)
+++.+++|+
T Consensus 220 ~~~~~~~~~ 228 (335)
T PLN02630 220 KDGEMRVPP 228 (335)
T ss_pred CCeeEEeCC
Confidence 887777764
No 29
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.59 E-value=2.3e-14 Score=106.08 Aligned_cols=146 Identities=15% Similarity=0.164 Sum_probs=100.0
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCC--hhhhhcCCc--C-chhhHHHHHHHHHHHHHcCCeEEEecCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELD--VNLIEKASI--L-LKPRRSAHIAAMEMAKTSGCILSYDPNAR 76 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~--~~~l~~~~~--~-~~~~~~~~~~~~~~a~~~g~~i~~D~~~r 76 (156)
.+|+.+++.++.+|+|++.+. .+.....+.++.++ .+.+..+++ + .......+..+++.+++.+.++++|++..
T Consensus 86 ~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 164 (288)
T cd01941 86 RSTASYTAILDKDGDLVVALA-DMDIYELLTPDFLRKIREALKEAKPIVVDANLPEEALEYLLALAAKHGVPVAFEPTSA 164 (288)
T ss_pred CCcceEEEEECCCCCEEEEEe-chHhhhhCCHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHhhhhcCCcEEEEccch
Confidence 478999999888899987432 22333334333221 345677777 2 23445567788888899999999999743
Q ss_pred CCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCC--CCchHHHHHHHHhCCCcEEEEeecCCceEEEec---Cee
Q 040166 77 LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCD--ASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQ---EFK 151 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~--~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~---~~~ 151 (156)
+. ..+ +.++++++|++++|++|+..+++... .+.....++.+...|++.||||+|++|++++++ +..
T Consensus 165 ~~-------~~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~ 236 (288)
T cd01941 165 PK-------LKK-LFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVET 236 (288)
T ss_pred HH-------hcc-chhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCcee
Confidence 21 111 12578999999999999999998642 222222345666789999999999999999887 455
Q ss_pred eEeCC
Q 040166 152 GHVGG 156 (156)
Q Consensus 152 ~~~p~ 156 (156)
+++|+
T Consensus 237 ~~~~~ 241 (288)
T cd01941 237 KLFPA 241 (288)
T ss_pred EEecC
Confidence 67664
No 30
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.58 E-value=6.2e-14 Score=105.07 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=93.6
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCC------hhhhhcCCc--Cch-----hhHHHHHHHHHHHHHcCCeE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELD------VNLIEKASI--LLK-----PRRSAHIAAMEMAKTSGCIL 69 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~------~~~l~~~~~--~~~-----~~~~~~~~~~~~a~~~g~~i 69 (156)
+|+.+.++++ +|+|+++++++ +. +..++.+ .+.+.++++ ++. ...+.+..+++.+++.|+++
T Consensus 85 ~t~~~~~~~~-~g~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v 159 (309)
T PRK13508 85 ETRNCIAILH-EGQQTEILEKG--PE--ISVQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELANQAGKPV 159 (309)
T ss_pred CCeeeEEEEe-CCCEEEEECCC--CC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEE
Confidence 3667767665 68999887764 32 2222211 234566666 211 12355778888899999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC---CCCchHHHHHHHHhCCCcEEEEeecCCceEEE
Q 040166 70 SYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC---DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYY 146 (156)
Q Consensus 70 ~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~ 146 (156)
+||++.. .. ..+...++++|++++|++|+..++|.. +.++..+++++++..|++.||||+|++|++++
T Consensus 160 ~~D~~~~--------~~-~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~ 230 (309)
T PRK13508 160 VLDCSGA--------AL-QAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIVSLGADGAFAK 230 (309)
T ss_pred EEECCcH--------HH-HHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEE
Confidence 9999731 11 223334578999999999999999863 22333334455556799999999999999998
Q ss_pred ecCeeeEeC
Q 040166 147 TQEFKGHVG 155 (156)
Q Consensus 147 ~~~~~~~~p 155 (156)
++++.+++|
T Consensus 231 ~~~~~~~~~ 239 (309)
T PRK13508 231 HNDTFYKVD 239 (309)
T ss_pred eCCceEEEe
Confidence 877666655
No 31
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.58 E-value=4.8e-14 Score=103.36 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=93.5
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLP 79 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~ 79 (156)
.+|+.+++.++++|+|+++++.. .. +++++.+.+.++++ ++... ...++++.+++.+ .+++|++.++..
T Consensus 86 ~~t~~~~~~~~~~g~r~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~-~~~~d~~~~~~~ 156 (265)
T cd01947 86 KPTRKTLSFIDPNGERTITVPGE--RL----EDDLKWPILDEGDGVFITAAA--VDKEAIRKCRETK-LVILQVTPRVRV 156 (265)
T ss_pred CCCceEEEEECCCCcceEEecCC--CC----cccCCHhHhccCCEEEEeccc--ccHHHHHHHHHhC-CeEeccCccccc
Confidence 36889999998889999887643 21 34444556777776 33221 2245667777665 688999876432
Q ss_pred CCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeCC
Q 040166 80 WPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVGG 156 (156)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p~ 156 (156)
..++++++++|++++|++|+..+++ + +.+.+.+++.||||+|++|++++++++.+++|+
T Consensus 157 --------~~~~~~~~~~d~~~~n~~e~~~l~~------~----~~~~~~~~~~viit~G~~Ga~~~~~~~~~~~~~ 215 (265)
T cd01947 157 --------DELNQALIPLDILIGSRLDPGELVV------A----EKIAGPFPRYLIVTEGELGAILYPGGRYNHVPA 215 (265)
T ss_pred --------hhHHHHhhhCCEEEeCHHHHHHhhh------H----HHHHhccCCEEEEEeCCCCeEEEECCeeEECCC
Confidence 2367889999999999999988774 2 456678999999999999999999887777764
No 32
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.58 E-value=6.1e-14 Score=105.09 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=93.9
Q ss_pred ceEEEEEeeCCCceeeeeecCCccccccccccC--ChhhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeEEEecC
Q 040166 4 LHWLFVTLTAEGERGFMFFRNPSAEMLLCEAEL--DVNLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 4 t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i--~~~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
|+.+.+.+. +|+|+++++++.........+.+ ...++.++++ ++ ..+.+.+..+++.+++.|++++||++
T Consensus 86 t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 164 (309)
T TIGR01231 86 TRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNKGVPVVLDCS 164 (309)
T ss_pred CEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCeEEEECC
Confidence 555555554 68999887764211110010111 1234566665 11 12356778899999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC---CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCee
Q 040166 75 ARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC---DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFK 151 (156)
Q Consensus 75 ~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~ 151 (156)
.++ .+.+.+.++++|++++|++|+..++|.. +.++..+.+++++..|++.|++|+|++|++++++++.
T Consensus 165 ~~~---------~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~~~~ 235 (309)
T TIGR01231 165 GAT---------LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIVSLGAQGAFAKHGHTF 235 (309)
T ss_pred hHH---------HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEEeCCee
Confidence 431 1234455688999999999999999853 3333333445555679999999999999999987766
Q ss_pred eEeC
Q 040166 152 GHVG 155 (156)
Q Consensus 152 ~~~p 155 (156)
+++|
T Consensus 236 ~~~~ 239 (309)
T TIGR01231 236 YKVN 239 (309)
T ss_pred EEee
Confidence 6655
No 33
>PRK09954 putative kinase; Provisional
Probab=99.55 E-value=1.1e-13 Score=105.90 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=94.6
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCCh--hhhhcCCc--Cc-hhhHHHHHHHHHHHHHcCCeEEEecCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV--NLIEKASI--LL-KPRRSAHIAAMEMAKTSGCILSYDPNAR 76 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~--~~l~~~~~--~~-~~~~~~~~~~~~~a~~~g~~i~~D~~~r 76 (156)
.+|+.++++++++ +++++++.++.+...++++.++. +.+..+++ ++ ..+.+.+..+++.+ .++++++|+...
T Consensus 145 ~~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a--~~~~v~~D~~~~ 221 (362)
T PRK09954 145 QSTSTYLAIANRQ-DETVLAINDTHILQQLTPQLLNGSRDLIRHAGVVLADCNLTAEALEWVFTLA--DEIPVFVDTVSE 221 (362)
T ss_pred CCCeEEEEEEcCC-CCEEEEEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHhC--CCCcEEEECCCH
Confidence 4688888877654 55566665434555566655442 44566666 22 22345555566554 479999998631
Q ss_pred CCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecC-eeeE
Q 040166 77 LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQE-FKGH 153 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~-~~~~ 153 (156)
.....+.++++++|++++|++|+..++|.. +.++..++++.+++.|++.||||+|++|+++++.+ +.++
T Consensus 222 --------~~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~ 293 (362)
T PRK09954 222 --------FKAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFL 293 (362)
T ss_pred --------HHhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEe
Confidence 111336788999999999999999999853 22222234577778899999999999999988754 3455
Q ss_pred eC
Q 040166 154 VG 155 (156)
Q Consensus 154 ~p 155 (156)
+|
T Consensus 294 ~~ 295 (362)
T PRK09954 294 LT 295 (362)
T ss_pred cc
Confidence 55
No 34
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.54 E-value=2.1e-13 Score=102.18 Aligned_cols=138 Identities=21% Similarity=0.216 Sum_probs=91.9
Q ss_pred ceEEEEEeeCCCceeeeeecCCccccccccccCCh-----hhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeEEE
Q 040166 4 LHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV-----NLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 4 t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~-----~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i~~ 71 (156)
++.+.+.++++|+|+++++++ +. ++.++++. ..++.+++ ++ ....+.+.++++.+++.|++++|
T Consensus 90 ~~~~~i~~~~~g~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~ 165 (309)
T PRK10294 90 RQNLHVHVEASGEQYRFVMPG--AA--LNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCII 165 (309)
T ss_pred eeeEEEEEcCCCcEEEEECCC--CC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 344456677788888777653 32 34444322 12344554 11 12346788899999999999999
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCC-CcEEEEeecCCceEEEec
Q 040166 72 DPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSN-LKLLLVTEGSNGCKYYTQ 148 (156)
Q Consensus 72 D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g-~~~vvit~G~~G~~~~~~ 148 (156)
|++. ...+..+ .++++|++++|++|+..+++.. +.++..++++++++.+ ++.||||+|++|++++++
T Consensus 166 D~~~--------~~~~~~~--~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~ 235 (309)
T PRK10294 166 DSSG--------DALSAAL--AIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVDS 235 (309)
T ss_pred eCCC--------HHHHHHH--hcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEcC
Confidence 9972 1111111 2468999999999999999863 2233333457777766 899999999999999887
Q ss_pred CeeeEeC
Q 040166 149 EFKGHVG 155 (156)
Q Consensus 149 ~~~~~~p 155 (156)
++.+++|
T Consensus 236 ~~~~~~~ 242 (309)
T PRK10294 236 ENCIQVV 242 (309)
T ss_pred CccEEEe
Confidence 7665555
No 35
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.53 E-value=4.1e-13 Score=100.26 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=95.7
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCCh------hhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV------NLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCIL 69 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~------~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i 69 (156)
+|+.+++.++++|+|+.+.+++ . .+++++++. +.++++++ ++ ..+.+.+..+++.+++.|+++
T Consensus 85 ~t~~~~~~~~~~g~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~v 160 (303)
T TIGR03168 85 ETRINVKIKESSGEETELNEPG--P--EISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIARKRGAKV 160 (303)
T ss_pred CCEEeEEEEeCCCCEEEEeCcC--C--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3556667777778777665542 2 244444421 23566675 21 123466778889899999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEEe
Q 040166 70 SYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 70 ~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~ 147 (156)
+||++.. .. ...+..++|++++|+.|+..++|.. +.++..++++.+.++|++.||||+|++|+++++
T Consensus 161 ~~D~~~~--------~~---~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~ 229 (303)
T TIGR03168 161 ILDTSGE--------AL---REALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGADGALLVT 229 (303)
T ss_pred EEECCcH--------HH---HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEe
Confidence 9999731 11 1223358999999999999999863 222333345667778999999999999999999
Q ss_pred cCeeeEeCC
Q 040166 148 QEFKGHVGG 156 (156)
Q Consensus 148 ~~~~~~~p~ 156 (156)
+++.+++|+
T Consensus 230 ~~~~~~~~~ 238 (303)
T TIGR03168 230 KEGALKATP 238 (303)
T ss_pred CCceEEeeC
Confidence 887777764
No 36
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.52 E-value=3.7e-13 Score=100.38 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=95.0
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCCh------hhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV------NLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCIL 69 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~------~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i 69 (156)
.|+.+++.++++|+|+++.+.+ + .++.++++. +.+.++++ ++ ..+.+.+..+++.+++.|+++
T Consensus 85 ~t~~~~~~~~~~g~~~~~~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~v 160 (304)
T TIGR03828 85 ETRINVKIKEPSGTETKLNGPG--P--EISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALAREKGAKV 160 (304)
T ss_pred CCeeeEEEEeCCCCEEEEECCC--C--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 3666777777788887776553 2 233333321 24566665 22 123466788889999999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhh-hhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEE
Q 040166 70 SYDPNARLLPWPSAEAARGGIISIW-DEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYY 146 (156)
Q Consensus 70 ~~D~~~r~~~~~~~~~~~~~l~~~l-~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~ 146 (156)
+||++.+ . +.+.+ ...|++++|+.|+..+++.. +.++..++++.+++.|.+.||||+|++|++++
T Consensus 161 ~~D~~~~--------~----~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~ 228 (304)
T TIGR03828 161 ILDTSGE--------A----LRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGADGALLV 228 (304)
T ss_pred EEECChH--------H----HHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCcEEE
Confidence 9999731 1 12222 45799999999999999863 33334344567777899999999999999999
Q ss_pred ecCeeeEeCC
Q 040166 147 TQEFKGHVGG 156 (156)
Q Consensus 147 ~~~~~~~~p~ 156 (156)
++++.+++|+
T Consensus 229 ~~~~~~~~~~ 238 (304)
T TIGR03828 229 TKEGALFAQP 238 (304)
T ss_pred cCCceEEEeC
Confidence 8776666653
No 37
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.49 E-value=5.8e-13 Score=97.50 Aligned_cols=135 Identities=13% Similarity=0.033 Sum_probs=91.8
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCC
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLP 79 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~ 79 (156)
.+|+.+++.++ +|+|++..++. ++...+.+++.+.+.+..+++ +... .....+++.+++.|++++||++.++.
T Consensus 74 ~~t~~~~~~~~-~~~r~~~~~~~-~~~~~~~~~~~~~~~l~~~~~v~~~~~--~~~~~~~~~~~~~~~~v~~D~~~~~~- 148 (260)
T PRK09813 74 GVTAQTQVELH-DNDRVFGDYTE-GVMADFALSEEDYAWLAQYDIVHAAIW--GHAEDAFPQLHAAGKLTAFDFSDKWD- 148 (260)
T ss_pred CCCceEEEEEe-CCcEEeeccCC-CcccccccCHHHHHHHHhCCEEEEecc--chHHHHHHHHHHcCCeEEEEcCCCcc-
Confidence 35888888885 68998876653 333333333333356777777 2211 11345677788899999999987531
Q ss_pred CCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeCC
Q 040166 80 WPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVGG 156 (156)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p~ 156 (156)
. +.+.++++++|++++|+++.. .+. .++++.+.+.|++.||||+|++|++++++++.+++|+
T Consensus 149 ---~----~~~~~~~~~~d~~~~~~~~~~-----~~~---~~~~~~~~~~g~~~viit~G~~Ga~~~~~~~~~~~~~ 210 (260)
T PRK09813 149 ---S----PLWQTLVPHLDYAFASAPQED-----EFL---RLKMKAIVARGAGVVIVTLGENGSIAWDGAQFWRQAP 210 (260)
T ss_pred ---H----HHHHHhCCceeEEEecCCcch-----HHH---HHHHHHHHHcCCCEEEEEECCCceEEEECCEEEecCC
Confidence 1 235788999999999866421 112 2234677778999999999999999998887777774
No 38
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.48 E-value=8.8e-13 Score=92.28 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCC--chHHHHHHHHhCC
Q 040166 53 SAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDAS--DDNVVLEKLFHSN 130 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~--~~~~~~~~l~~~g 130 (156)
+.+.++++.+++.|+++++|++.++..|.. ..+.++++++|++++|++|+..+++....+ +..+.++.+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g 145 (196)
T cd00287 71 EAVLDALEEARRRGVPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKG 145 (196)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Confidence 667888899999999999999987655531 126778999999999999999999875432 2222357777889
Q ss_pred CcEEEEeecCCceEEEe-cCeeeEeCC
Q 040166 131 LKLLLVTEGSNGCKYYT-QEFKGHVGG 156 (156)
Q Consensus 131 ~~~vvit~G~~G~~~~~-~~~~~~~p~ 156 (156)
++.||+|+|++|+++++ ++..+++|+
T Consensus 146 ~~~vvvt~G~~g~~~~~~~~~~~~~~~ 172 (196)
T cd00287 146 PKVVIVTLGEKGAIVATRGGTEVHVPA 172 (196)
T ss_pred CCEEEEEECCCccEEEecCCceEEcCC
Confidence 99999999999999998 666666663
No 39
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.48 E-value=1.5e-12 Score=97.78 Aligned_cols=138 Identities=11% Similarity=0.072 Sum_probs=94.4
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCC------hhhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELD------VNLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCIL 69 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~------~~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i 69 (156)
+|+.++++++++|+|+++.+.+ . .+++.+.+ ..+++.+++ ++ ....+.+..+++.+++.|.++
T Consensus 89 ~t~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v 164 (312)
T PRK09513 89 RTRINVKLTEKDGEVTDFNFSG--F--EVTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCI 164 (312)
T ss_pred CCEEEEEEEeCCCcEEEEeCCC--C--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEE
Confidence 4777888888788988776653 2 22322221 134556665 11 223467778889999999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCC--CCchHHHHHHHHhCCCcEEEEeecCCceEEEe
Q 040166 70 SYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCD--ASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 70 ~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~--~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~ 147 (156)
+||++.+ .. ...+.+..|++++|++|+..++|... .++..+.++.+.++|++.||||+|++|++++.
T Consensus 165 ~~D~~~~--------~~---~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 233 (312)
T PRK09513 165 IFDSSRE--------AL---VAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVISLGAEGALWVN 233 (312)
T ss_pred EEECChH--------HH---HHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEEe
Confidence 9999731 11 12234578999999999999998642 22333345667778999999999999999988
Q ss_pred cCeeeEeC
Q 040166 148 QEFKGHVG 155 (156)
Q Consensus 148 ~~~~~~~p 155 (156)
+++..++|
T Consensus 234 ~~~~~~~~ 241 (312)
T PRK09513 234 ASGEWIAK 241 (312)
T ss_pred CCceEEec
Confidence 77655554
No 40
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.48 E-value=1.2e-12 Score=97.72 Aligned_cols=138 Identities=20% Similarity=0.174 Sum_probs=93.2
Q ss_pred cceEEEEEeeCCCceeeeeecCCcccccccccc------CChhhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAE------LDVNLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCIL 69 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~------i~~~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i 69 (156)
+|+.+++.+++ +++.+..+.+. ...++.+. .....++++++ ++ ....+.+..+++.+++.|+++
T Consensus 91 ~t~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v 167 (304)
T cd01172 91 PTTTKTRVIAR-NQQLLRVDRED--DSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEALIAAARELGIPV 167 (304)
T ss_pred CceEEEEEecC-CcEEEEEecCC--CCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCE
Confidence 57888777764 56666555422 12222221 11235666776 22 123466788889999999999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHH-hCCCcEEEEeecCCceEEE
Q 040166 70 SYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYY 146 (156)
Q Consensus 70 ~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~ 146 (156)
+||++.++ ...++++|++++|++|+..+++.. +.+...+++++++ ..|++.||||+|++|++++
T Consensus 168 ~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~ 234 (304)
T cd01172 168 LVDPKGRD-------------YSKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEALLVTLGEEGMTLF 234 (304)
T ss_pred EEeCCCcc-------------hhhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCeEEEEcCCCccEEE
Confidence 99998542 145789999999999999999863 2222222345565 3689999999999999999
Q ss_pred e-cCeeeEeCC
Q 040166 147 T-QEFKGHVGG 156 (156)
Q Consensus 147 ~-~~~~~~~p~ 156 (156)
+ +++.+++|+
T Consensus 235 ~~~~~~~~~~~ 245 (304)
T cd01172 235 ERDGEVQHIPA 245 (304)
T ss_pred cCCCcEEEecC
Confidence 8 666677764
No 41
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.47 E-value=1.4e-12 Score=96.87 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=92.8
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCCh------hhhhcCCc--Cch-----hhHHHHHHHHHHHHHcCCeE
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV------NLIEKASI--LLK-----PRRSAHIAAMEMAKTSGCIL 69 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~------~~l~~~~~--~~~-----~~~~~~~~~~~~a~~~g~~i 69 (156)
+|+.+++.++.+|+++.+.+.+ + .+++++++. +.++++++ +.. ...+....+++.+++.++++
T Consensus 86 ~t~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i 161 (289)
T cd01164 86 ETRINVKIKEEDGTETEINEPG--P--EISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLAREKGARV 161 (289)
T ss_pred CCEEEEEEEeCCCCEEEEeCCC--C--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 3566667676667776665542 2 233343321 23455665 221 11256778888888899999
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHhh-hhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCcEEEEeecCCceEEE
Q 040166 70 SYDPNARLLPWPSAEAARGGIISIW-DEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYY 146 (156)
Q Consensus 70 ~~D~~~r~~~~~~~~~~~~~l~~~l-~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~ 146 (156)
+||++.+ . +.+.+ +++|++++|++|+..+++.. +.++..++++.+.+.|++.||||+|++|++++
T Consensus 162 ~~D~~~~--------~----~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~ 229 (289)
T cd01164 162 ILDTSGE--------A----LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSLGADGALLV 229 (289)
T ss_pred EEECChH--------H----HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCEEE
Confidence 9999742 1 12333 79999999999999999863 23334444577778899999999999999998
Q ss_pred ecCeeeEeC
Q 040166 147 TQEFKGHVG 155 (156)
Q Consensus 147 ~~~~~~~~p 155 (156)
.+++.+++|
T Consensus 230 ~~~~~~~~~ 238 (289)
T cd01164 230 TKDGVYRAS 238 (289)
T ss_pred cCCcEEEec
Confidence 877766665
No 42
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.47 E-value=6.5e-13 Score=96.82 Aligned_cols=136 Identities=16% Similarity=0.100 Sum_probs=89.1
Q ss_pred cceEEEEEeeCCCceeeeeecCCccccccccccCChhhhhcCCc--CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCC
Q 040166 3 GLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPW 80 (156)
Q Consensus 3 ~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~ 80 (156)
+|+.+.+.++.+|+|+++++++ ++...... ...+.++++ ++....+....+.+. .++|++|++.....|
T Consensus 72 ~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~D~~~~~~~~ 142 (254)
T cd01937 72 ETTTFELNYTNEGRTRTLLAKC--AAIPDTES---PLSTITAEIVILGPVPEEISPSLFRK----FAFISLDAQGFLRRA 142 (254)
T ss_pred CeEEEEEEecCCCCeeeeeccc--cCCccccc---ccccCcccEEEECCCcchhcHHHHhh----hhheeEccccceeec
Confidence 4666777777778998887764 32222211 123455666 333333333334332 378999998643234
Q ss_pred CCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeCC
Q 040166 81 PSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVGG 156 (156)
Q Consensus 81 ~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p~ 156 (156)
... ...+.++++++|++++|++|+..+ .+.+++ ++.+.+.|++.||||+|.+|++++++++.+++|+
T Consensus 143 ~~~---~~~~~~~l~~~di~~~n~~E~~~~---~~~~~~---~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~ 209 (254)
T cd01937 143 NQE---KLIKCVILKLHDVLKLSRVEAEVI---STPTEL---ARLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPA 209 (254)
T ss_pred ccc---chHHHhhcccCcEEEEcHHHHhhc---CCHHHH---HHHHHHcCCCEEEEeeCCcceEEEECCccEEccc
Confidence 321 123678899999999999999873 233333 4677778999999999999999998887666653
No 43
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.41 E-value=2.2e-12 Score=95.21 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=83.3
Q ss_pred hhhhcCCc--CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCC
Q 040166 39 NLIEKASI--LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDA 116 (156)
Q Consensus 39 ~~l~~~~~--~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~ 116 (156)
+.++++++ +.....+....+++.+++. ++++||+. .+|.. ...+.++++++++|++++|++|+..++|..+.
T Consensus 110 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~v~~D~~---~~~~~--~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~ 183 (277)
T cd01946 110 EHYKDSEFVFLGNIAPELQREVLEQVKDP-KLVVMDTM---NFWIS--IKPEKLKKVLAKVDVVIINDGEARQLTGAANL 183 (277)
T ss_pred HHhhcCCEEEECCCCHHHHHHHHHHHHhC-CEEEEccH---HHhhh--hhHHHHHHHhccCCEEeCCHHHHHHHhCCchH
Confidence 45667777 4444556677788888877 88999983 24631 23456788999999999999999999986554
Q ss_pred CchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeCC
Q 040166 117 SDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVGG 156 (156)
Q Consensus 117 ~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p~ 156 (156)
.++ ++.++++|++.||+|+|.+|++++++++.+++|+
T Consensus 184 ~~~---~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~ 220 (277)
T cd01946 184 VKA---ARLILAMGPKALIIKRGEYGALLFTDDGYFAAPA 220 (277)
T ss_pred HHH---HHHHHHcCCCEEEEecCCCcEEEEECCceEEcCC
Confidence 443 4677788999999999999999988887777664
No 44
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.37 E-value=8.7e-12 Score=93.57 Aligned_cols=105 Identities=21% Similarity=0.278 Sum_probs=75.5
Q ss_pred hhhhcCCc--Cc-----hhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhh
Q 040166 39 NLIEKASI--LL-----KPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLI 111 (156)
Q Consensus 39 ~~l~~~~~--~~-----~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~ 111 (156)
..++++++ ++ ....+.+..+++.+++.|++++||++.+. | ..++++|++++|++|+..++
T Consensus 139 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~-----------~~~~~~d~l~~n~~E~~~l~ 205 (315)
T TIGR02198 139 EQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGKD--F-----------SRYRGATLITPNRKEAEAAV 205 (315)
T ss_pred hhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc--h-----------hhcCCCcEECCCHHHHHHHh
Confidence 34666776 22 12356678888999999999999998431 1 24679999999999999999
Q ss_pred CCC-CCCchHHHHHHHH-hCCCcEEEEeecCCceEEEec-CeeeEeCC
Q 040166 112 EGC-DASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYTQ-EFKGHVGG 156 (156)
Q Consensus 112 g~~-~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~~-~~~~~~p~ 156 (156)
+.. +.++..+.+++++ +.|++.||||+|++|++++++ ++.+++|+
T Consensus 206 ~~~~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~ 253 (315)
T TIGR02198 206 GACDTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPA 253 (315)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecC
Confidence 842 2222222345555 368999999999999999884 55667663
No 45
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.37 E-value=8.5e-12 Score=91.10 Aligned_cols=103 Identities=19% Similarity=0.053 Sum_probs=79.2
Q ss_pred chhhHHHHHHHHHHHHHc--CCeEEEecCCCC--CCCCCHHHHHHHHHHhhh-hCcEEecCHHHHhHhhCCC--CCCchH
Q 040166 48 LKPRRSAHIAAMEMAKTS--GCILSYDPNARL--LPWPSAEAARGGIISIWD-EADMIKISEEELTLLIEGC--DASDDN 120 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~--g~~i~~D~~~r~--~~~~~~~~~~~~l~~~l~-~~dil~~n~~E~~~l~g~~--~~~~~~ 120 (156)
+....+.+.++++.+++. |+++++||+.+. .+|...+...+.+++++. ++|++++|..|+..++|.. +.++..
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g~~~~~~~~~~ 162 (254)
T cd01173 83 SAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTGKKINDLEDAK 162 (254)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcCCCcCCHHHHH
Confidence 456677888999988877 899999998654 455323455667777777 9999999999999999964 223344
Q ss_pred HHHHHHHhCCCcEEEEeecCC------ceEEEecCe
Q 040166 121 VVLEKLFHSNLKLLLVTEGSN------GCKYYTQEF 150 (156)
Q Consensus 121 ~~~~~l~~~g~~~vvit~G~~------G~~~~~~~~ 150 (156)
+++++++++|++.|+||.|.+ |++++++++
T Consensus 163 ~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~ 198 (254)
T cd01173 163 AAARALHAKGPKTVVVTSVELADDDRIEMLGSTATE 198 (254)
T ss_pred HHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCc
Confidence 456788888999999999985 888777654
No 46
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=4.4e-12 Score=93.48 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=102.3
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCCh----hhhhcCCc------CchhhHHHHHHHHHHHHHcCCeEEE
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELDV----NLIEKASI------LLKPRRSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~~----~~l~~~~~------~~~~~~~~~~~~~~~a~~~g~~i~~ 71 (156)
.+||.|.+.+++++ |++..+. ++...++.++++. .+++.+++ +-+...+++..+.+.+.+.+...++
T Consensus 117 ~~TGtCavli~~~n-RSL~anL--gAAn~f~~dhl~~~~~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~l 193 (343)
T KOG2854|consen 117 GPTGTCAVLITGDN-RSLCANL--GAANCFKVDHLDKEENWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTL 193 (343)
T ss_pred CCCceEEEEEeCCC-cchhhcc--chhhccCHHHhcchhhhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhhe
Confidence 48999999998765 9998887 5777788888842 46777776 3344567777888888887775555
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC-----CCCchHHHHHHHHh---CCCcEEEEeecCCce
Q 040166 72 DPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC-----DASDDNVVLEKLFH---SNLKLLLVTEGSNGC 143 (156)
Q Consensus 72 D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~-----~~~~~~~~~~~l~~---~g~~~vvit~G~~G~ 143 (156)
+.+ .++. .+.+.+.+.++++|+||+|+|++|+..++... +..+.+.....+-+ ...+.++||.|.+++
T Consensus 194 nls--apfI--~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~ 269 (343)
T KOG2854|consen 194 NLS--APFI--SQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIALKLSALPKVNGTRPRTVVITQGPDPV 269 (343)
T ss_pred ecc--chhH--HHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhhHhhccccccccccceEEEccCCCce
Confidence 443 2232 35567788999999999999999999998743 33222211112212 347899999999999
Q ss_pred EEEecCeeeE
Q 040166 144 KYYTQEFKGH 153 (156)
Q Consensus 144 ~~~~~~~~~~ 153 (156)
.+..+++...
T Consensus 270 i~~~~~~v~~ 279 (343)
T KOG2854|consen 270 IVAEDGKVTA 279 (343)
T ss_pred EEecCCceEE
Confidence 9998876543
No 47
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.35 E-value=1.1e-11 Score=90.43 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHHHHHHHH-HcCCeEEEecCCCCCCCC--CHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHH
Q 040166 53 SAHIAAMEMAK-TSGCILSYDPNARLLPWP--SAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLF 127 (156)
Q Consensus 53 ~~~~~~~~~a~-~~g~~i~~D~~~r~~~~~--~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~ 127 (156)
+....+++..+ ..|++++|||++++..|. +.+...+.++++++++|++++|++|+..++|.. +.++..+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~~~~~~~~a~~l~ 162 (253)
T PRK12413 83 EIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKTLEDMKEAAKKLY 162 (253)
T ss_pred HHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 44444444444 468999999999998884 344556667788999999999999999999963 3333444567787
Q ss_pred hCCCcEEEEeecCCc
Q 040166 128 HSNLKLLLVTEGSNG 142 (156)
Q Consensus 128 ~~g~~~vvit~G~~G 142 (156)
+.|++.|+||.|.+|
T Consensus 163 ~~g~~~Vvvt~g~~~ 177 (253)
T PRK12413 163 DLGAKAVVIKGGNRL 177 (253)
T ss_pred HcCCCEEEEeCCCCC
Confidence 889999999999874
No 48
>PRK07105 pyridoxamine kinase; Validated
Probab=99.30 E-value=3.9e-11 Score=89.06 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHHHHHcCCeEEEecCCCCC--CCCC-HHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC------CCCc
Q 040166 48 LKPRRSAHIAAMEMAKTSGCILSYDPNARLL--PWPS-AEAARGGIISIWDEADMIKISEEELTLLIEGC------DASD 118 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~--~~~~-~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~------~~~~ 118 (156)
++...+.+..+++.+++.++++++||+.+.. +|.. .+...+.++++++++|++++|+.|+..|+|.. +.++
T Consensus 86 ~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~~~~~~~~ 165 (284)
T PRK07105 86 SPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDKPYLEKSYSEEE 165 (284)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCCCcCcCCCCHHH
Confidence 4455566667777667778999999997643 4542 24456677889999999999999999999863 2333
Q ss_pred hHHHHHHHHhCCCcEEEEee-----cCCceEEEec
Q 040166 119 DNVVLEKLFHSNLKLLLVTE-----GSNGCKYYTQ 148 (156)
Q Consensus 119 ~~~~~~~l~~~g~~~vvit~-----G~~G~~~~~~ 148 (156)
..++++++.+.|++.|+||. |..|++++++
T Consensus 166 ~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~ 200 (284)
T PRK07105 166 IKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDR 200 (284)
T ss_pred HHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeC
Confidence 44456777778999999999 7788888764
No 49
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.6e-10 Score=85.71 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhh-hCcEEecCHHHHhHhhCCC--CCCchHHHHHHH
Q 040166 50 PRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWD-EADMIKISEEELTLLIEGC--DASDDNVVLEKL 126 (156)
Q Consensus 50 ~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~-~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l 126 (156)
.+.+.+.++++.+++.|+++++|.+ .+. +.+.|+ ..++++||.+|+..++|.. +.++..++++++
T Consensus 143 ~~~d~y~~li~~~~~~g~~vilD~S--------g~~----L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l 210 (310)
T COG1105 143 VPPDAYAELIRILRQQGAKVILDTS--------GEA----LLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAAREL 210 (310)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECC--------hHH----HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 3567889999999999999999996 233 344443 4899999999999999974 444555566778
Q ss_pred HhCCCcEEEEeecCCceEEEecCeeeEe
Q 040166 127 FHSNLKLLLVTEGSNGCKYYTQEFKGHV 154 (156)
Q Consensus 127 ~~~g~~~vvit~G~~G~~~~~~~~~~~~ 154 (156)
+..|++.|||++|++|+++.++++.+++
T Consensus 211 ~~~g~~~ViVSlG~~Gal~~~~~~~~~a 238 (310)
T COG1105 211 LAEGIENVIVSLGADGALLVTAEGVYFA 238 (310)
T ss_pred HHCCCCEEEEEecCcccEEEccCCeEEE
Confidence 8899999999999999999998876543
No 50
>PRK05756 pyridoxamine kinase; Validated
Probab=99.28 E-value=4.9e-11 Score=88.65 Aligned_cols=107 Identities=19% Similarity=0.050 Sum_probs=77.6
Q ss_pred chhhHHHHHHHHHHHHHcC--CeEEEecCCCCC---CCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchH
Q 040166 48 LKPRRSAHIAAMEMAKTSG--CILSYDPNARLL---PWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDN 120 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g--~~i~~D~~~r~~---~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~ 120 (156)
+....+.+.++++.+++.+ +.+++||+.++. .|.+.+......+.+++++|++++|..|+..|+|.. +.++..
T Consensus 85 ~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~~~~~ 164 (286)
T PRK05756 85 SAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETLEDAV 164 (286)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCHHHHH
Confidence 4556778888888888776 568999998873 343333333344558999999999999999999863 344444
Q ss_pred HHHHHHHhCCCcEEEEeecCC--------ceEEEecCeeeEe
Q 040166 121 VVLEKLFHSNLKLLLVTEGSN--------GCKYYTQEFKGHV 154 (156)
Q Consensus 121 ~~~~~l~~~g~~~vvit~G~~--------G~~~~~~~~~~~~ 154 (156)
+++++++++|++.|+||.|.+ |++++++++.++.
T Consensus 165 ~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~ 206 (286)
T PRK05756 165 AAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHI 206 (286)
T ss_pred HHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEE
Confidence 456778888999999999976 4767676654433
No 51
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.25 E-value=1.1e-10 Score=92.27 Aligned_cols=140 Identities=15% Similarity=0.127 Sum_probs=87.9
Q ss_pred CcceEEEEEeeCCCceeeeeecCCccccccccccCC---hhhhhcCCc--Cch---hhHHHHHHHHHHHHHcCCeEEEec
Q 040166 2 QGLHWLFVTLTAEGERGFMFFRNPSAEMLLCEAELD---VNLIEKASI--LLK---PRRSAHIAAMEMAKTSGCILSYDP 73 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~i~---~~~l~~~~~--~~~---~~~~~~~~~~~~a~~~g~~i~~D~ 73 (156)
.+|+.+++.++.+++ +..+........+..+++. .+.++++++ ++. ...+.+..+++.+++.|+++++||
T Consensus 101 ~~T~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp 178 (473)
T PRK11316 101 HPTITKLRVLSRNQQ--LIRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAKGALASVQAMIQLARKAGVPVLIDP 178 (473)
T ss_pred CCCCeeEEEEeCCce--EEecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeC
Confidence 357777777764433 2222111111112222221 244666666 221 123456788888999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC-CCCchHHHHHHHH-hCCCcEEEEeecCCceEEEecCe-
Q 040166 74 NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC-DASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYTQEF- 150 (156)
Q Consensus 74 ~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~-~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~~~~- 150 (156)
+.+. ...++.+|++++|++|+..++|.. +.++..+.+++++ +.|++.|+||+|++|++++++++
T Consensus 179 ~~~~-------------~~~~~~~dil~pN~~Ea~~l~g~~~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~ 245 (473)
T PRK11316 179 KGTD-------------FERYRGATLLTPNLSEFEAVVGKCKDEAELVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKA 245 (473)
T ss_pred CCCC-------------ccccCCCeEECcCHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCc
Confidence 7431 123578999999999999999852 3333222345554 57999999999999999887665
Q ss_pred eeEeCC
Q 040166 151 KGHVGG 156 (156)
Q Consensus 151 ~~~~p~ 156 (156)
.+++|+
T Consensus 246 ~~~~~~ 251 (473)
T PRK11316 246 PLHLPT 251 (473)
T ss_pred eEEecC
Confidence 356663
No 52
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.24 E-value=2.7e-10 Score=82.57 Aligned_cols=104 Identities=16% Similarity=-0.022 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHc-CCeEEEecCCCCCCCC---CHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCC--CCchHHHHHH
Q 040166 52 RSAHIAAMEMAKTS-GCILSYDPNARLLPWP---SAEAARGGIISIWDEADMIKISEEELTLLIEGCD--ASDDNVVLEK 125 (156)
Q Consensus 52 ~~~~~~~~~~a~~~-g~~i~~D~~~r~~~~~---~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~--~~~~~~~~~~ 125 (156)
.+.+..+.+.+++. ++++++||+.++..|. +.+......+.+++++|++++|..|+..|+|... .++...++++
T Consensus 80 ~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~~~~ 159 (242)
T cd01169 80 AEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIATEEDMMKAAKA 159 (242)
T ss_pred HHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34455555666665 8899999998754331 1222223345667999999999999999999642 2222234567
Q ss_pred HHhCCCcEEEEeecCCc----e-EEEecCeeeEeC
Q 040166 126 LFHSNLKLLLVTEGSNG----C-KYYTQEFKGHVG 155 (156)
Q Consensus 126 l~~~g~~~vvit~G~~G----~-~~~~~~~~~~~p 155 (156)
+.++|++.||||.|.+| + +++++++..++|
T Consensus 160 l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~ 194 (242)
T cd01169 160 LLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFE 194 (242)
T ss_pred HHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEe
Confidence 77789999999999986 3 566665555544
No 53
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.23 E-value=1.8e-10 Score=85.50 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=73.4
Q ss_pred chhhHHHHHHHHHHHHH--cCCeEEEecCCCCC---CCCCHHHHHHHHH-HhhhhCcEEecCHHHHhHhhCCC--CCCch
Q 040166 48 LKPRRSAHIAAMEMAKT--SGCILSYDPNARLL---PWPSAEAARGGII-SIWDEADMIKISEEELTLLIEGC--DASDD 119 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~--~g~~i~~D~~~r~~---~~~~~~~~~~~l~-~~l~~~dil~~n~~E~~~l~g~~--~~~~~ 119 (156)
++...+.+..+++..+. .+.++++||..++. +|.+. ...+.++ ++++++|++++|..|+..|+|.. +.+++
T Consensus 99 s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~-~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~ 177 (281)
T PRK08176 99 SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKP-DLPEAYRQHLLPLAQGLTPNIFELEILTGKPCRTLDSA 177 (281)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECc-cHHHHHHHHhHhhcCEeCCCHHHHHHHhCCCCCCHHHH
Confidence 44556666777766554 47889999986652 45332 3334454 58999999999999999999963 33344
Q ss_pred HHHHHHHHhCCCcEEEEeecCCc-------eEEEecCe
Q 040166 120 NVVLEKLFHSNLKLLLVTEGSNG-------CKYYTQEF 150 (156)
Q Consensus 120 ~~~~~~l~~~g~~~vvit~G~~G-------~~~~~~~~ 150 (156)
.++++++++.|++.||||.|.+| ++++++++
T Consensus 178 ~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~ 215 (281)
T PRK08176 178 IAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADS 215 (281)
T ss_pred HHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCc
Confidence 44567888889999999999998 56666554
No 54
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.20 E-value=2e-10 Score=85.31 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHHHHHcC--CeEEEecCCCCC---CCCCHHHHHHHH-HHhhhhCcEEecCHHHHhHhhCCC--CCCch
Q 040166 48 LKPRRSAHIAAMEMAKTSG--CILSYDPNARLL---PWPSAEAARGGI-ISIWDEADMIKISEEELTLLIEGC--DASDD 119 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g--~~i~~D~~~r~~---~~~~~~~~~~~l-~~~l~~~dil~~n~~E~~~l~g~~--~~~~~ 119 (156)
+....+.+.++++.+++.| +.+++||+.+.. .|.+ +...+.+ +++++++|++++|..|+..++|.. +.++.
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~-~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~~~~ 163 (286)
T TIGR00687 85 SAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVA-PDLLEVYREKAIPVADIITPNQFELELLTGRKINTVEEA 163 (286)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeC-hhHHHHHHHhccccccEecCCHHHHHHHhCCCcCCHHHH
Confidence 3445677888888888775 678899987643 2322 3344444 468899999999999999999963 33344
Q ss_pred HHHHHHHHhCCCcEEEEe-ecCCce
Q 040166 120 NVVLEKLFHSNLKLLLVT-EGSNGC 143 (156)
Q Consensus 120 ~~~~~~l~~~g~~~vvit-~G~~G~ 143 (156)
.+++++++++|++.|||| .|.+|+
T Consensus 164 ~~~~~~l~~~g~~~Viit~~g~~g~ 188 (286)
T TIGR00687 164 LAAADALIAMGPDIVLVTHLARAGS 188 (286)
T ss_pred HHHHHHHHHhCCCEEEEEeccccCC
Confidence 445677888899999999 788886
No 55
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.19 E-value=4.5e-10 Score=82.11 Aligned_cols=103 Identities=16% Similarity=0.015 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCC-eEEEecCCCC----CCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHH
Q 040166 52 RSAHIAAMEMAKTSGC-ILSYDPNARL----LPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLE 124 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~-~i~~D~~~r~----~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~ 124 (156)
.+.+..+++.+++.+. ++++||..+. .++. .+......+++++++|++++|..|+..|+|.. +.++..++++
T Consensus 79 ~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~a~ 157 (254)
T TIGR00097 79 AEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLE-EEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQDMIKAAK 157 (254)
T ss_pred HHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCC-HHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 4566677777788888 6999998654 2332 22222234568899999999999999999863 2233334567
Q ss_pred HHHhCCCcEEEEeecC----Cce-EEEecCeeeEeC
Q 040166 125 KLFHSNLKLLLVTEGS----NGC-KYYTQEFKGHVG 155 (156)
Q Consensus 125 ~l~~~g~~~vvit~G~----~G~-~~~~~~~~~~~p 155 (156)
.+.+.|++.|+||.|. +|+ +++++++..++|
T Consensus 158 ~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~ 193 (254)
T TIGR00097 158 KLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILK 193 (254)
T ss_pred HHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEE
Confidence 7888899999999997 454 556666544443
No 56
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.17 E-value=4.8e-10 Score=88.15 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCC----CCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHH
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARL----LPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLE 124 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~----~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~ 124 (156)
+.+.+..+++.+++.|++++|||++++ .+|. .+......+++++++|++++|+.|+..|+|.. +.++...+++
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~ 160 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAK 160 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 356778888889999999999998875 3564 23223344678999999999999999999963 3334444567
Q ss_pred HHHh-CCCcEEEEeecC----Cce-EEEecCeeeEeC
Q 040166 125 KLFH-SNLKLLLVTEGS----NGC-KYYTQEFKGHVG 155 (156)
Q Consensus 125 ~l~~-~g~~~vvit~G~----~G~-~~~~~~~~~~~p 155 (156)
+|.+ +|++.|+||.|. +|+ +++++++.+++|
T Consensus 161 ~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~ 197 (448)
T PRK08573 161 YIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFR 197 (448)
T ss_pred HHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEE
Confidence 7764 799999999985 454 444555544443
No 57
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.17 E-value=6.5e-10 Score=81.75 Aligned_cols=102 Identities=17% Similarity=0.057 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCC-eEEEecCCCCC----CCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCc-hHHHH
Q 040166 52 RSAHIAAMEMAKTSGC-ILSYDPNARLL----PWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASD-DNVVL 123 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~-~i~~D~~~r~~----~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~-~~~~~ 123 (156)
.+.+..+.+.+++.+. ++++||+.++. +|. .+......+++++++|++++|..|+..|+|.. +.++ ..+++
T Consensus 85 ~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~~a 163 (266)
T PRK06427 85 AEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLA-DDAVAALRERLLPLATLITPNLPEAEALTGLPIADTEDEMKAAA 163 (266)
T ss_pred HHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCCCCcHHHHHHHH
Confidence 4555666677777775 79999987653 342 22222333468999999999999999999963 3222 33456
Q ss_pred HHHHhCCCcEEEEeecC--Cce----EEEecCeeeEe
Q 040166 124 EKLFHSNLKLLLVTEGS--NGC----KYYTQEFKGHV 154 (156)
Q Consensus 124 ~~l~~~g~~~vvit~G~--~G~----~~~~~~~~~~~ 154 (156)
+++.++|++.||||.|. +|. +++++++.+++
T Consensus 164 ~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~ 200 (266)
T PRK06427 164 RALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERF 200 (266)
T ss_pred HHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEE
Confidence 77878899999999998 664 55665544443
No 58
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.14 E-value=8.8e-10 Score=81.23 Aligned_cols=93 Identities=14% Similarity=-0.047 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHcCCe-EEEecCCCCCCCC---CHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHH
Q 040166 51 RRSAHIAAMEMAKTSGCI-LSYDPNARLLPWP---SAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLE 124 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~-i~~D~~~r~~~~~---~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~ 124 (156)
+.+.+..+.+.+++.+.+ +++||........ .++......+++++++|++++|+.|+..|+|.. +.++..++++
T Consensus 83 ~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~~~~~~~aa~ 162 (268)
T PRK12412 83 SVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKINSLEDMKEAAK 162 (268)
T ss_pred CHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCCCHHHHHHHHH
Confidence 345666677777777776 9999975432111 112222334568899999999999999999863 3334444567
Q ss_pred HHHhCCCcEEEEeecCCce
Q 040166 125 KLFHSNLKLLLVTEGSNGC 143 (156)
Q Consensus 125 ~l~~~g~~~vvit~G~~G~ 143 (156)
+++++|++.|+||.|.+|+
T Consensus 163 ~l~~~g~~~ViIt~G~~g~ 181 (268)
T PRK12412 163 KIHALGAKYVLIKGGSKLG 181 (268)
T ss_pred HHHhcCCCEEEEeccCCCC
Confidence 7888899999999999864
No 59
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.06 E-value=3.6e-09 Score=79.08 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHHHHcC--CeEEEecCC--CCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHH
Q 040166 49 KPRRSAHIAAMEMAKTSG--CILSYDPNA--RLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVV 122 (156)
Q Consensus 49 ~~~~~~~~~~~~~a~~~g--~~i~~D~~~--r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~ 122 (156)
....+.+.++++.+++.+ +.+++||+. |..+|. .+.+.+.++++++++|++++|+.|+..++|.. +.++..++
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~~~~ 167 (296)
T PTZ00344 89 ADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLLSGVEVKDLSDALEA 167 (296)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHHHHH
Confidence 344555666666666665 589999754 556675 45677788899999999999999999999963 33344445
Q ss_pred HHHHHhCCCcEEEEe---ecCCc
Q 040166 123 LEKLFHSNLKLLLVT---EGSNG 142 (156)
Q Consensus 123 ~~~l~~~g~~~vvit---~G~~G 142 (156)
++++.+.|++.|||| +|.+|
T Consensus 168 ~~~l~~~g~~~VvVTg~~~~~~g 190 (296)
T PTZ00344 168 IDWFHEQGIPVVVITSFREDEDP 190 (296)
T ss_pred HHHHHHhCCCEEEEEeecCCCCC
Confidence 677777899999999 66666
No 60
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.04 E-value=3.9e-09 Score=77.89 Aligned_cols=101 Identities=13% Similarity=-0.022 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcC-CeEEEecCCCCCCCCC--HHHHHHHH-HHhhhhCcEEecCHHHHhHhhCCC---CCCchHHHHH
Q 040166 52 RSAHIAAMEMAKTSG-CILSYDPNARLLPWPS--AEAARGGI-ISIWDEADMIKISEEELTLLIEGC---DASDDNVVLE 124 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g-~~i~~D~~~r~~~~~~--~~~~~~~l-~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~~~~ 124 (156)
.+.+..+.+..++.+ .++++||..+..-... .+...+.+ +.+++++|++++|..|+..|+|.. +.++..++++
T Consensus 86 ~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~~~~~~~~aa~ 165 (270)
T PRK12616 86 VDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIKTVEQMKEAAK 165 (270)
T ss_pred HHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 344555666666665 4699999875421110 12222334 448899999999999999999852 3334444567
Q ss_pred HHHhCCCcEEEEeecCCce------EEEecCeee
Q 040166 125 KLFHSNLKLLLVTEGSNGC------KYYTQEFKG 152 (156)
Q Consensus 125 ~l~~~g~~~vvit~G~~G~------~~~~~~~~~ 152 (156)
++.+.|++.|+||.|.+|. +++++++..
T Consensus 166 ~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~ 199 (270)
T PRK12616 166 KIHELGAQYVVITGGGKLKHEKAVDVLYDGETAE 199 (270)
T ss_pred HHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEE
Confidence 7888899999999998862 455555433
No 61
>PLN02978 pyridoxal kinase
Probab=98.94 E-value=2.5e-08 Score=74.95 Aligned_cols=96 Identities=10% Similarity=-0.023 Sum_probs=70.8
Q ss_pred chhhHHHHHHHHHHHHH--cCCeEEEecCCCC--CCCCCHHHHHHHHH-HhhhhCcEEecCHHHHhHhhCCC--CCCchH
Q 040166 48 LKPRRSAHIAAMEMAKT--SGCILSYDPNARL--LPWPSAEAARGGII-SIWDEADMIKISEEELTLLIEGC--DASDDN 120 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~--~g~~i~~D~~~r~--~~~~~~~~~~~~l~-~~l~~~dil~~n~~E~~~l~g~~--~~~~~~ 120 (156)
++...+.+..+++.+++ .++.+++||+.++ .+|.+ +...+.++ ++++++|++++|+.|+..|+|.. +.++..
T Consensus 97 s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~-~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~~~~~~~~~~ 175 (308)
T PLN02978 97 SVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVP-PELVPVYREKVVPLATMLTPNQFEAEQLTGIRIVTEEDAR 175 (308)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCC-hhHHHHHHHHHHhhCCeeccCHHHHHHHhCCCCCCHHHHH
Confidence 56677888888888876 4577899999876 35543 34455564 59999999999999999999963 333333
Q ss_pred HHHHHHHhCCCcEEEEeecC-CceE
Q 040166 121 VVLEKLFHSNLKLLLVTEGS-NGCK 144 (156)
Q Consensus 121 ~~~~~l~~~g~~~vvit~G~-~G~~ 144 (156)
.+++++++.|++.||||-+. +|..
T Consensus 176 ~a~~~l~~~g~~~VVITs~~~~~~~ 200 (308)
T PLN02978 176 EACAILHAAGPSKVVITSIDIDGKL 200 (308)
T ss_pred HHHHHHHHhCCCEEEEEEecCCCCE
Confidence 45677888899999998754 3443
No 62
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=98.75 E-value=1.1e-07 Score=75.97 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCC----CCCCCC--HHHHHHHHH-HhhhhCcEEecCHHHHhHhhCCC---CCCchHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNAR----LLPWPS--AEAARGGII-SIWDEADMIKISEEELTLLIEGC---DASDDNV 121 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r----~~~~~~--~~~~~~~l~-~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~ 121 (156)
.+.+..+.+..+ +.++++||..+ ..++.. .+...+.++ ++++++|++++|..|+..|+|.. +.++..+
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~ 388 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEARA 388 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHHH
Confidence 455555555553 67899999875 233432 111223333 68899999999999999999963 2333444
Q ss_pred HHHHHHhCCCcEEEEeecCCc
Q 040166 122 VLEKLFHSNLKLLLVTEGSNG 142 (156)
Q Consensus 122 ~~~~l~~~g~~~vvit~G~~G 142 (156)
+++.+.+.|++.||||.|.+|
T Consensus 389 aa~~l~~~G~~~VvVtgg~~~ 409 (504)
T PTZ00347 389 AAQALAQYGSRYVLVKGGHDL 409 (504)
T ss_pred HHHHHHhcCCCEEEEeCCCCC
Confidence 567777889999999999963
No 63
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=98.67 E-value=3.4e-07 Score=66.76 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=57.4
Q ss_pred chhhHHHHHHHHHHHHHcCCeEEEecCCCCC---CCCCHHHHHHHHHH-hhhhCcEEecCHHHHhHhhCC--CCCCchHH
Q 040166 48 LKPRRSAHIAAMEMAKTSGCILSYDPNARLL---PWPSAEAARGGIIS-IWDEADMIKISEEELTLLIEG--CDASDDNV 121 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~---~~~~~~~~~~~l~~-~l~~~dil~~n~~E~~~l~g~--~~~~~~~~ 121 (156)
+....+.+.+++ +..+.++++||-.... ... .+...+.+++ ++|++|++.||..|+..|+|. .+.+++.+
T Consensus 71 ~~~~v~~i~~~l---~~~~~~vV~DPVm~~~~g~~~~-~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~ 146 (246)
T PF08543_consen 71 SAEQVEIIADFL---KKPKIPVVLDPVMGDSGGYYYV-DPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEE 146 (246)
T ss_dssp SHHHHHHHHHHH---HHTTTEEEEE---EETTTECTS-SHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHH
T ss_pred CchhhhhHHHHH---hccCCCEEEecccccCCCCcCC-CHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHH
Confidence 334444444444 4567799999965421 111 2334445554 999999999999999999995 34445556
Q ss_pred HHHHHHhCCCcEEEEeecC
Q 040166 122 VLEKLFHSNLKLLLVTEGS 140 (156)
Q Consensus 122 ~~~~l~~~g~~~vvit~G~ 140 (156)
++++|+++|++.|+||-|.
T Consensus 147 ~~~~l~~~G~~~VvItg~~ 165 (246)
T PF08543_consen 147 AAKALLALGPKNVVITGGH 165 (246)
T ss_dssp HHHHHHHTS-SEEEEEEEE
T ss_pred HHHHHHHhCCceEEEeeec
Confidence 6788988999999999886
No 64
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=98.67 E-value=2.5e-07 Score=74.43 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHcCCeEEEecCCCC----CCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC---CCCchH
Q 040166 48 LKPRRSAHIAAMEMAKTSGCILSYDPNARL----LPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC---DASDDN 120 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~----~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~ 120 (156)
+....+.+..+++.. .+..|++||..+. .++. +...+.++++++++|++++|..|+..|+|.. +.++..
T Consensus 109 s~~~i~~v~~~l~~~--~~~~vVlDPv~~~~~G~~l~~--~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~~~~~~~d~~ 184 (530)
T PRK14713 109 DAEVIDAVRTWLAEH--RPPVVVLDPVMVATSGDRLLE--EDAEAALRELVPRADLITPNLPELAVLLGEPPATTWEEAL 184 (530)
T ss_pred CHHHHHHHHHHHHhC--CCCCEEECCcccCCCCCCCCC--HHHHHHHHHHhhhhheecCChHHHHHHhCCCCCCCHHHHH
Confidence 445556666666543 2446999998864 3442 4456777889999999999999999999953 334443
Q ss_pred HHHHHHHhCCCcEEEEeecCC
Q 040166 121 VVLEKLFHSNLKLLLVTEGSN 141 (156)
Q Consensus 121 ~~~~~l~~~g~~~vvit~G~~ 141 (156)
.+++++.+.+...||||.|..
T Consensus 185 ~aa~~L~~~~g~~VvItgG~~ 205 (530)
T PRK14713 185 AQARRLAAETGTTVLVKGGHL 205 (530)
T ss_pred HHHHHHHHhcCCEEEEeCCCC
Confidence 445677655446899998864
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=98.63 E-value=6.4e-07 Score=71.62 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCe-EEEecCCCCCC---CCCHHHHHHHH-HHhhhhCcEEecCHHHHhHhhCCC---CCCchHHHH
Q 040166 52 RSAHIAAMEMAKTSGCI-LSYDPNARLLP---WPSAEAARGGI-ISIWDEADMIKISEEELTLLIEGC---DASDDNVVL 123 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~-i~~D~~~r~~~---~~~~~~~~~~l-~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~~~ 123 (156)
.+.+..+++..++.+.. +++||...... ..+ +...+.+ +++++++|++++|..|+..|+|.. +.++....+
T Consensus 90 ~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~-~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~~~a 168 (502)
T PLN02898 90 AEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAG-PSILSALREELLPLATIVTPNVKEASALLGGDPLETVADMRSAA 168 (502)
T ss_pred HHHHHHHHHHHHhCCCCCEEEccccccCCCCccCC-HHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCCCCHHHHHHHH
Confidence 56667777777777775 99999643221 111 2333344 468899999999999999999853 233344456
Q ss_pred HHHHhCCCcEEEEeecCCc------eEEEecCeeeE
Q 040166 124 EKLFHSNLKLLLVTEGSNG------CKYYTQEFKGH 153 (156)
Q Consensus 124 ~~l~~~g~~~vvit~G~~G------~~~~~~~~~~~ 153 (156)
+++.++|++.|+||.|..| .+++++++..+
T Consensus 169 ~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~ 204 (502)
T PLN02898 169 KELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHE 204 (502)
T ss_pred HHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEE
Confidence 7787889999999999863 24555554333
No 66
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.61 E-value=4.7e-07 Score=75.54 Aligned_cols=101 Identities=10% Similarity=0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHc-CCeEEEecCCCC----CCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC---CCCchHHHH
Q 040166 52 RSAHIAAMEMAKTS-GCILSYDPNARL----LPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC---DASDDNVVL 123 (156)
Q Consensus 52 ~~~~~~~~~~a~~~-g~~i~~D~~~r~----~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~---~~~~~~~~~ 123 (156)
.+.+..+.+.+++. +.++++||..+. .+++ +...+.++++++++|++++|..|+..|+|.. +.++..+++
T Consensus 322 ~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~--~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~~~~~~~d~~~aa 399 (755)
T PRK09517 322 ADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLD--ADATEALRRLAVHVDVVTPNIPELAVLCGEAPAITMDEAIAQA 399 (755)
T ss_pred HHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCC--HHHHHHHHHHhCcccCccCCHHHHHHHhCCCCCCCHHHHHHHH
Confidence 35555666666663 577999997653 2332 3344556789999999999999999999952 334444445
Q ss_pred HHHHhCCCcEEEEeec------CCceEEEecCeeeEe
Q 040166 124 EKLFHSNLKLLLVTEG------SNGCKYYTQEFKGHV 154 (156)
Q Consensus 124 ~~l~~~g~~~vvit~G------~~G~~~~~~~~~~~~ 154 (156)
+++.+.+...||||.| ..|+++..++...++
T Consensus 400 ~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~ 436 (755)
T PRK09517 400 RGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQV 436 (755)
T ss_pred HHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEE
Confidence 6776643348999999 357776554443333
No 67
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=98.59 E-value=8.9e-07 Score=64.50 Aligned_cols=100 Identities=16% Similarity=-0.017 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcC-CeEEEecCCCCCCCC--CHHHHHH-HHHHhhhhCcEEecCHHHHhHhhCC---CCCCchHHHHH
Q 040166 52 RSAHIAAMEMAKTSG-CILSYDPNARLLPWP--SAEAARG-GIISIWDEADMIKISEEELTLLIEG---CDASDDNVVLE 124 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g-~~i~~D~~~r~~~~~--~~~~~~~-~l~~~l~~~dil~~n~~E~~~l~g~---~~~~~~~~~~~ 124 (156)
.+.++.+.+..++.+ .++++||-....--+ ..++..+ ..++++|+++++.||-.|+..|+|. .+.++..++++
T Consensus 84 ~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~~ 163 (263)
T COG0351 84 AEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAAK 163 (263)
T ss_pred HHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHHH
Confidence 455666667777777 679999964422111 0133344 4458999999999999999999994 34555555556
Q ss_pred HHHhCCCcEEEEeecCCc----eEEEecCee
Q 040166 125 KLFHSNLKLLLVTEGSNG----CKYYTQEFK 151 (156)
Q Consensus 125 ~l~~~g~~~vvit~G~~G----~~~~~~~~~ 151 (156)
.+.++|++.|+||-|-.. -++++++..
T Consensus 164 ~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~ 194 (263)
T COG0351 164 LLHELGAKAVLIKGGHLEGEAVDVLYDGGSF 194 (263)
T ss_pred HHHHhCCCEEEEcCCCCCCCceeEEEcCCce
Confidence 666799999999987644 244555433
No 68
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=98.55 E-value=3e-06 Score=61.69 Aligned_cols=111 Identities=18% Similarity=0.073 Sum_probs=70.0
Q ss_pred hhhhcCCc-------CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhh--CcEEecCHHHHhH
Q 040166 39 NLIEKASI-------LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDE--ADMIKISEEELTL 109 (156)
Q Consensus 39 ~~l~~~~~-------~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~--~dil~~n~~E~~~ 109 (156)
+++...+. ..+...+.+..+++.+++.++++++||.... + +.. ..+.+.+++.. +|++++|..|+..
T Consensus 45 ~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~--~-~~~-~~~~~~~ll~~~~~~ilTPN~~Ea~~ 120 (242)
T cd01170 45 ELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVG--A-TSF-RTEVAKELLAEGQPTVIRGNASEIAA 120 (242)
T ss_pred HHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccC--c-chh-HHHHHHHHHhcCCCeEEcCCHHHHHH
Confidence 45666665 2233445666666778888999999996431 1 111 11334566665 9999999999999
Q ss_pred hhCCCC-----------CCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEeC
Q 040166 110 LIEGCD-----------ASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHVG 155 (156)
Q Consensus 110 l~g~~~-----------~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~p 155 (156)
|+|... .++....++++.+++...|++| |.... ++++++.+++|
T Consensus 121 L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~ 175 (242)
T cd01170 121 LAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVK 175 (242)
T ss_pred HhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEe
Confidence 998531 2233344567766554578898 76664 45666555554
No 69
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=98.40 E-value=2.6e-06 Score=62.53 Aligned_cols=93 Identities=20% Similarity=0.123 Sum_probs=66.4
Q ss_pred chhhHHHHHHHHHHHHHcC--CeEEEecCCCCC--CCCCHHHHHHHH-HHhhhhCcEEecCHHHHhHhhCC--CCCCchH
Q 040166 48 LKPRRSAHIAAMEMAKTSG--CILSYDPNARLL--PWPSAEAARGGI-ISIWDEADMIKISEEELTLLIEG--CDASDDN 120 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g--~~i~~D~~~r~~--~~~~~~~~~~~l-~~~l~~~dil~~n~~E~~~l~g~--~~~~~~~ 120 (156)
+......+..+++..|+.+ ..+++||-...+ ++...+ ....+ .+++|.+|++.||.-|++.|+|. .+.+++.
T Consensus 84 s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~-~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~ 162 (281)
T COG2240 84 SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPE-VAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAV 162 (281)
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccc-hHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHH
Confidence 3455667778888877774 458999964432 332222 22233 37899999999999999999997 4666666
Q ss_pred HHHHHHHhCCCcEEEEeecCC
Q 040166 121 VVLEKLFHSNLKLLLVTEGSN 141 (156)
Q Consensus 121 ~~~~~l~~~g~~~vvit~G~~ 141 (156)
++++.|.+.|++.|+||.=..
T Consensus 163 ~aa~~L~~~gp~~vlVTS~~~ 183 (281)
T COG2240 163 KAARKLGADGPKIVLVTSLSR 183 (281)
T ss_pred HHHHHHhhcCCCEEEEecccc
Confidence 667788888999999995444
No 70
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=2.4e-06 Score=65.25 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCc-hHHHHHHHHh-CCC
Q 040166 54 AHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASD-DNVVLEKLFH-SNL 131 (156)
Q Consensus 54 ~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~-~~~~~~~l~~-~g~ 131 (156)
.+..+++.++++|++|.+||--+ + .+.+..+..+.||..|+....|....++ ..+.+.+|.+ ++.
T Consensus 159 ~~q~~I~~ar~~~~pVLvDPKg~-----D--------f~~Y~GAtLiTPN~~E~~~~vg~~~~e~el~~~g~kL~~~~~L 225 (467)
T COG2870 159 NVQKMIDLAREAGIPVLVDPKGK-----D--------FEKYRGATLITPNLKEFEEAVGKCKSEEELEERGQKLKEELDL 225 (467)
T ss_pred hHHHHHHHHHHcCCcEEECCCCc-----c--------hhhhCCCeecCCCHHHHHHHHcccccHHHHHHHHHHHHHhhCc
Confidence 36788899999999999999632 1 1335789999999999999999754332 2222455654 789
Q ss_pred cEEEEeecCCceEEEecCeeeEeCC
Q 040166 132 KLLLVTEGSNGCKYYTQEFKGHVGG 156 (156)
Q Consensus 132 ~~vvit~G~~G~~~~~~~~~~~~p~ 156 (156)
..++||++++|..++..++..|+|+
T Consensus 226 ~alLvTRsE~GMtL~~~~~~~h~pt 250 (467)
T COG2870 226 SALLVTRSEKGMTLFQEGKPLHFPA 250 (467)
T ss_pred ceEEEEeccCCceeecCCcccccch
Confidence 9999999999999999888788885
No 71
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.11 E-value=0.00011 Score=53.80 Aligned_cols=100 Identities=16% Similarity=0.047 Sum_probs=60.9
Q ss_pred CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhh--hCcEEecCHHHHhHhhCCC----------
Q 040166 47 LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWD--EADMIKISEEELTLLIEGC---------- 114 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g~~---------- 114 (156)
+.+...+.+..+++.+++.++++++||.-... +... ....+++++ +++++++|..|+..|+|..
T Consensus 60 l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~---s~~r-~~~~~~Ll~~~~~~vITpN~~E~~~L~g~~~~~~gvd~~~ 135 (249)
T TIGR00694 60 LDKESIEAMIAAGKSANELGVPVVLDPVGVGA---TKFR-TETALELLSEGRFAAIRGNAGEIASLAGETGLMKGVDSGE 135 (249)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEccccccc---chhH-HHHHHHHHhhcCCceeCCCHHHHHHHhCCCCCCCCcCCcc
Confidence 33444566777778788889999999964221 1111 123356676 4799999999999999853
Q ss_pred CCCchHHHHHHHHhCCCcEEEEeecCCceEEEecCeee
Q 040166 115 DASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 115 ~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~ 152 (156)
+.++....++++.+++...|++|=+.+ +++++++.+
T Consensus 136 ~~~d~~~~a~~la~~~~~~VllkG~~D--~i~~~~~~~ 171 (249)
T TIGR00694 136 GAADAIRAAQQAAQKYGTVVVITGEVD--YVSDGTSVY 171 (249)
T ss_pred chHHHHHHHHHHHHHhCCEEEEECCCc--EEEeCCEEE
Confidence 112333345667664333677764422 445555443
No 72
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.04 E-value=2.7e-05 Score=56.63 Aligned_cols=89 Identities=17% Similarity=0.076 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHcC--CeEEEecCCCCC--CCCCHHHHHHHHHHhh-hhCcEEecCHHHHhHhhCC--CCCCchHHHH
Q 040166 51 RRSAHIAAMEMAKTSG--CILSYDPNARLL--PWPSAEAARGGIISIW-DEADMIKISEEELTLLIEG--CDASDDNVVL 123 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g--~~i~~D~~~r~~--~~~~~~~~~~~l~~~l-~~~dil~~n~~E~~~l~g~--~~~~~~~~~~ 123 (156)
....+..++++.++.+ ...++||..... ++. +++..+..++++ +.+|++.||+-|++.|+|. .+.+++.+++
T Consensus 95 ~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV-~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~I~t~eda~~a~ 173 (308)
T KOG2599|consen 95 FLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYV-PEELIPVYRDLIIPLADIITPNQFEAEILTGMEIRTEEDAKRAV 173 (308)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCccccCCccEec-cHHHHHHHHHhhcchhhhcCCcchhhhhhcCCeeccHHHHHHHH
Confidence 3455666667766654 566789964432 333 355556666666 4599999999999999997 4677777788
Q ss_pred HHHHhCCCcEEEEeecC
Q 040166 124 EKLFHSNLKLLLVTEGS 140 (156)
Q Consensus 124 ~~l~~~g~~~vvit~G~ 140 (156)
+.|+++|++.||||...
T Consensus 174 ~~lhq~~v~~vVITS~~ 190 (308)
T KOG2599|consen 174 EKLHQKGVKTVVITSFD 190 (308)
T ss_pred HHHHHhCCCEEEEEeee
Confidence 99999999999999544
No 73
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=98.02 E-value=5.3e-05 Score=55.38 Aligned_cols=88 Identities=11% Similarity=-0.031 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHH--HHhhhhCcEEecCHHHHhHhhCCCC---CCchHHHHHHHH
Q 040166 53 SAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGI--ISIWDEADMIKISEEELTLLIEGCD---ASDDNVVLEKLF 127 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l--~~~l~~~dil~~n~~E~~~l~g~~~---~~~~~~~~~~l~ 127 (156)
+.+..+++.+++.++++++|+.-- ...... ..+.+.+++++||..|+..|+|... .++..++++++.
T Consensus 91 ~~~~~i~~~~~~~~~pvVlDa~~~--------~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~~~~~~~~~~~a~~l~ 162 (254)
T cd01171 91 EEAAEILEKALAKDKPLVLDADAL--------NLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEIQADRLAAAREAA 162 (254)
T ss_pred HHHHHHHHHHHhcCCCEEEEcHHH--------HHhhcChhhhccCCCEEECCCHHHHHHHhCCChhhhhhHHHHHHHHHH
Confidence 567778888888899999998621 000000 0235789999999999999999642 112223456677
Q ss_pred hCCCcEEEEeecCCceEEEecCe
Q 040166 128 HSNLKLLLVTEGSNGCKYYTQEF 150 (156)
Q Consensus 128 ~~g~~~vvit~G~~G~~~~~~~~ 150 (156)
+++. .+|+..|. +.+++++++
T Consensus 163 ~~~~-~~vvlkG~-~~~i~~~~~ 183 (254)
T cd01171 163 AKLG-ATVVLKGA-VTVIADPDG 183 (254)
T ss_pred HHcC-cEEEEcCC-CCEEECCCC
Confidence 6664 55666674 666666543
No 74
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=98.01 E-value=4.4e-05 Score=56.47 Aligned_cols=89 Identities=11% Similarity=-0.038 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCC--CCCchHHHHHHHHhCCCc
Q 040166 55 HIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGC--DASDDNVVLEKLFHSNLK 132 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~--~~~~~~~~~~~l~~~g~~ 132 (156)
+..+++.+++.+.++++|+. ............+..++++||..|+..|+|.. +.++..++++++.+. .+
T Consensus 108 ~~~l~~~~~~~~~pvVlDa~--------g~~l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~~~~~aa~~l~~~-~~ 178 (272)
T TIGR00196 108 FKKAVEEVLELDKPVVLDAD--------ALNLLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQGDRLEAAQDIAQK-LQ 178 (272)
T ss_pred HHHHHHHHHhcCCCEEEEhH--------HHHHHhhcccccCCCEEECCCHHHHHHHhCCchhhhhhHHHHHHHHHHH-hC
Confidence 66778888888999999985 11221211111346899999999999999963 233444445677664 34
Q ss_pred EEEEeecCCceEEEecCeee
Q 040166 133 LLLVTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 133 ~vvit~G~~G~~~~~~~~~~ 152 (156)
.+|++.|.++.++..++..+
T Consensus 179 ~vVv~kG~~~~i~~~~~~~~ 198 (272)
T TIGR00196 179 AVVVLKGAADVIAAPDGDLW 198 (272)
T ss_pred CEEEEcCCCCEEEcCCCeEE
Confidence 68889999998765434433
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=97.95 E-value=0.00033 Score=51.62 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=55.1
Q ss_pred CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhh--hCcEEecCHHHHhHhhCCCC---------
Q 040166 47 LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWD--EADMIKISEEELTLLIEGCD--------- 115 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g~~~--------- 115 (156)
+.+...+.+..+++.+++.++++++||.-.. .+. ...+...++++ +++++++|..|+..|+|...
T Consensus 65 l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~---~~~-~~~~~~~~ll~~~~~~vItPN~~E~~~L~g~~~~~~~vd~~~ 140 (263)
T PRK09355 65 LTEERIEAMLAAGKIANEAGKPVVLDPVGVG---ATS-YRTEFALELLAEVKPAVIRGNASEIAALAGEAAETKGVDSTD 140 (263)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEECCcccC---cch-hhHHHHHHHHHhcCCcEecCCHHHHHHHhCCCcccCCcCCCC
Confidence 3444455566667778888999999996321 111 11122334444 68999999999999998521
Q ss_pred -CCchHHHHHHHHhCCCcEEEEeecC
Q 040166 116 -ASDDNVVLEKLFHSNLKLLLVTEGS 140 (156)
Q Consensus 116 -~~~~~~~~~~l~~~g~~~vvit~G~ 140 (156)
.++....++++.+++...|++|-+.
T Consensus 141 ~~~~~~~~a~~la~~~~~~VvvkG~~ 166 (263)
T PRK09355 141 GSADAVEIAKAAAKKYGTVVVVTGEV 166 (263)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 1133334566766544467777433
No 76
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=97.89 E-value=0.00016 Score=54.67 Aligned_cols=73 Identities=11% Similarity=0.019 Sum_probs=49.0
Q ss_pred eEEEecCCCCCC---CCCHHHHHH-HHHHhhhhCcEEecCHHHHhHhhC-----CC-CCCchHHHHHHHHh-CCCcEEEE
Q 040166 68 ILSYDPNARLLP---WPSAEAARG-GIISIWDEADMIKISEEELTLLIE-----GC-DASDDNVVLEKLFH-SNLKLLLV 136 (156)
Q Consensus 68 ~i~~D~~~r~~~---~~~~~~~~~-~l~~~l~~~dil~~n~~E~~~l~g-----~~-~~~~~~~~~~~l~~-~g~~~vvi 136 (156)
++++||.....- ..+.+.+.+ ..+.++|++|++.||-.|++.|+| .. +.++..+++++|++ +|++.|+|
T Consensus 107 ~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~Vli 186 (321)
T PTZ00493 107 LVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALDCQMDLSKANMTELCKLVTEKLNINACLF 186 (321)
T ss_pred eEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 489999643221 111122323 345699999999999999999998 21 22333445677876 69999999
Q ss_pred eecC
Q 040166 137 TEGS 140 (156)
Q Consensus 137 t~G~ 140 (156)
|-|.
T Consensus 187 KGGh 190 (321)
T PTZ00493 187 KSCN 190 (321)
T ss_pred CcCC
Confidence 9775
No 77
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.27 E-value=0.0073 Score=44.03 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=49.4
Q ss_pred CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhh--CcEEecCHHHHhHhhCC
Q 040166 47 LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDE--ADMIKISEEELTLLIEG 113 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~--~dil~~n~~E~~~l~g~ 113 (156)
++....+.+..+.+.+++.|+++++||--.-. ...-++..+++|.+ .+++++|..|...|.|.
T Consensus 66 L~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA----t~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~ 130 (265)
T COG2145 66 LSAERIQAMRAAIKAANESGKPVVLDPVGVGA----TKFRTKFALELLAEVKPAAIRGNASEIAALAGE 130 (265)
T ss_pred CChHHHHHHHHHHHHHHhcCCCEEecCccCCc----hHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcc
Confidence 67778889999999999999999999942111 22233567778864 69999999999999974
No 78
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.22 E-value=0.0072 Score=44.08 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=56.9
Q ss_pred CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhh--hhCcEEecCHHHHhHhhCCCC---------
Q 040166 47 LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIW--DEADMIKISEEELTLLIEGCD--------- 115 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l--~~~dil~~n~~E~~~l~g~~~--------- 115 (156)
+++...+.+..+.+.+++.|++++|||.-.- .+ +.-.+..+++| .+.+++++|..|...|.|...
T Consensus 60 l~~~~~~~m~~A~~~A~~~~~PvVLDPVgvG---as-~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~~~~~kGVDs~~ 135 (246)
T PF02110_consen 60 LTDERIEAMKKAAKAANELGIPVVLDPVGVG---AS-KFRTEFALELLNNYKPTVIRGNASEIAALAGEDSKAKGVDSGD 135 (246)
T ss_dssp SSHHHHHHHHHHHHHHHHTT--EEEE-TTBT---TB-HHHHHHHHHHHCHS--SEEEEEHHHHHHHHTCCCCSCSSSSSC
T ss_pred CCHhHHHHHHHHHHHHHHcCCCEEEeCcccC---Cc-HHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCcCCCCCCcCcCC
Confidence 5566678899999999999999999994211 11 22335677888 478999999999999998521
Q ss_pred -CCchHHHHHHHHhCCCcEEEEeecCCceE
Q 040166 116 -ASDDNVVLEKLFHSNLKLLLVTEGSNGCK 144 (156)
Q Consensus 116 -~~~~~~~~~~l~~~g~~~vvit~G~~G~~ 144 (156)
..++.+.++++.++- +.+|+-.|+.=..
T Consensus 136 ~~~~~~~~a~~lA~k~-~~vVvvTG~~D~I 164 (246)
T PF02110_consen 136 SDEDAIEAAKQLAQKY-NCVVVVTGEVDYI 164 (246)
T ss_dssp GSHHHHHHHHHHHHHT-TSEEEEESSSEEE
T ss_pred cchHHHHHHHHHHHhc-CCEEEEecCCcEE
Confidence 111233455665422 2355555655443
No 79
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=96.97 E-value=0.0034 Score=48.85 Aligned_cols=88 Identities=16% Similarity=0.027 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCC---CCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC--------CCCCchH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLP---WPSAEAARGGIISIWDEADMIKISEEELTLLIEG--------CDASDDN 120 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~---~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~--------~~~~~~~ 120 (156)
...+.+.+++. .=.++++||-..... ........-..++++|.+|++.+|-.|+..|++. .+..+.+
T Consensus 107 ~~vi~q~l~~~--~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~di~ 184 (523)
T KOG2598|consen 107 VKVIEQSLQKF--NIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFDIA 184 (523)
T ss_pred HHHHHHHHHhh--cCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHHHH
Confidence 34445555442 234688898432211 1112334456889999999999999999999984 2444556
Q ss_pred HHHHHHHhCCCcEEEEeecCC
Q 040166 121 VVLEKLFHSNLKLLLVTEGSN 141 (156)
Q Consensus 121 ~~~~~l~~~g~~~vvit~G~~ 141 (156)
+.++++.+.|++.|+++.|.-
T Consensus 185 ~~~~~ihk~gpk~VlvkGghi 205 (523)
T KOG2598|consen 185 KDAAKIHKLGPKNVLVKGGHI 205 (523)
T ss_pred HHHHHHHhcCcceEEEeCCCc
Confidence 667888889999999998853
No 80
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.031 Score=40.57 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=77.0
Q ss_pred EEEee-CCCceeeeeecCCccccccccccCChhhhhcCCc--C---chhhHHHHHHHHHHHH-----HcCCeEEEecCCC
Q 040166 8 FVTLT-AEGERGFMFFRNPSAEMLLCEAELDVNLIEKASI--L---LKPRRSAHIAAMEMAK-----TSGCILSYDPNAR 76 (156)
Q Consensus 8 ~v~~~-~~g~r~~~~~~~~~a~~~l~~~~i~~~~l~~~~~--~---~~~~~~~~~~~~~~a~-----~~g~~i~~D~~~r 76 (156)
.|.++ ..|.|+++++.. +...++..++..--+.++++ + ++...-.+.+.+.+-+ +.++.+++|...
T Consensus 98 siI~~r~s~trTil~~dk--s~p~vT~~dF~kvdl~qy~WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~en- 174 (308)
T KOG2947|consen 98 SIIINRNSGTRTILYCDK--SLPDVTATDFEKVDLTQYGWIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDVEN- 174 (308)
T ss_pred eEEEecCCCceEEEEecC--CCccccHHHhhhcccceeeeEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEecC-
Confidence 34444 578999999974 45556666664334556666 2 2222112222222211 245789999852
Q ss_pred CCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHh---CC-C-cEEEEeecCCceEEEe-cCe
Q 040166 77 LLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFH---SN-L-KLLLVTEGSNGCKYYT-QEF 150 (156)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~---~g-~-~~vvit~G~~G~~~~~-~~~ 150 (156)
.++.+..++.++||+|.+.+=+..+ |-.+++++ ++.+.. .| . +.+|+--+..|+-... +|+
T Consensus 175 ---------~req~~~l~am~DyVf~sK~~a~~~-gfks~rea---~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~ 241 (308)
T KOG2947|consen 175 ---------PREQLFQLFAMCDYVFVSKDVAKHL-GFKSPREA---CEGLYGRVPKGKPKPVLICPWASEGAGALGADGK 241 (308)
T ss_pred ---------cHHHHHHHhhcccEEEEEHHHHhhh-ccCCHHHH---HHHHHhhcccCCCCcEEEeccccccccccCCCCC
Confidence 2356788899999999998766543 44556554 455543 23 2 3566667777775554 445
Q ss_pred eeEeC
Q 040166 151 KGHVG 155 (156)
Q Consensus 151 ~~~~p 155 (156)
.++++
T Consensus 242 yfev~ 246 (308)
T KOG2947|consen 242 YFEVD 246 (308)
T ss_pred EEecC
Confidence 56554
No 81
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=94.14 E-value=0.62 Score=37.08 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhC---C---------C---CCCchH
Q 040166 56 IAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIE---G---------C---DASDDN 120 (156)
Q Consensus 56 ~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g---~---------~---~~~~~~ 120 (156)
.+.++..+..++++-|...+-+ ....++.+.+++|++|-+=+||.|+..+.. . . ++++..
T Consensus 249 ~~~l~~l~~~~i~iH~EfAs~~-----d~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~ 323 (453)
T PRK14038 249 REHLKVLNERGIPAHLEFAFTP-----DETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVT 323 (453)
T ss_pred HHHHHhcCcCCceEEEEeeccc-----hHHHHHHHHhhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHH
Confidence 3334433446788888887532 345677777899999999999999998875 2 1 233444
Q ss_pred HHHHHHHh-CCCcEEEE
Q 040166 121 VVLEKLFH-SNLKLLLV 136 (156)
Q Consensus 121 ~~~~~l~~-~g~~~vvi 136 (156)
+.+..|++ .|++.+.|
T Consensus 324 e~~~~L~~~~gleri~v 340 (453)
T PRK14038 324 EAMLKLAEKTGVKRIHF 340 (453)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 45566665 68776554
No 82
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=92.51 E-value=3.9 Score=32.68 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=49.4
Q ss_pred HHHHHHHHH-HcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhh---CC----------CCCCchH
Q 040166 55 HIAAMEMAK-TSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLI---EG----------CDASDDN 120 (156)
Q Consensus 55 ~~~~~~~a~-~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~---g~----------~~~~~~~ 120 (156)
..+.++..+ +.+++|-|-...- .+.+-....+..++|++|-+=+||.|+..+. |. .++++..
T Consensus 238 ~~~~i~~L~~~~~i~iH~E~As~----~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi 313 (446)
T TIGR02045 238 AKEDIELLKKNKDLKIHVEFASI----QNREIRKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLI 313 (446)
T ss_pred HHHHHHHHhhCCCCeEEEEeccc----ccHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHH
Confidence 344444442 3678888877642 2344455566788999999999999999987 32 1233444
Q ss_pred HHHHHHHh-CCCcEEEE
Q 040166 121 VVLEKLFH-SNLKLLLV 136 (156)
Q Consensus 121 ~~~~~l~~-~g~~~vvi 136 (156)
+.+..+++ .|++.+.|
T Consensus 314 ~a~~~l~~~~~leri~v 330 (446)
T TIGR02045 314 LGAKILLDELNLEVVQV 330 (446)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 44566665 57665544
No 83
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=92.45 E-value=1.3 Score=31.76 Aligned_cols=72 Identities=8% Similarity=0.043 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEec-----CHHHHhHhhCCCCCCchHHHHHHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKI-----SEEELTLLIEGCDASDDNVVLEKL 126 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~-----n~~E~~~l~g~~~~~~~~~~~~~l 126 (156)
.+.+..+++.+++.|+.+.+|.|-- ++ . +.++++++++|.+.. +.+....++|.. .+.+.+-++.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~---~~-~----~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~-~~~il~nl~~l 123 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGD---AP-A----SKLLPLAKLCDEVLFDLKIMDATQARDVVKMN-LPRVLENLRLL 123 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC---CC-H----HHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC-HHHHHHHHHHH
Confidence 4556788999999999999999732 11 1 346777888887755 555566788853 22222223555
Q ss_pred HhCCCc
Q 040166 127 FHSNLK 132 (156)
Q Consensus 127 ~~~g~~ 132 (156)
.+.|+.
T Consensus 124 ~~~g~~ 129 (213)
T PRK10076 124 VSEGVN 129 (213)
T ss_pred HhCCCc
Confidence 556653
No 84
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=90.33 E-value=2.1 Score=34.22 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=46.9
Q ss_pred cCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC----------CCCCchHHHHHHHHh-CCCcE
Q 040166 65 SGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEG----------CDASDDNVVLEKLFH-SNLKL 133 (156)
Q Consensus 65 ~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~----------~~~~~~~~~~~~l~~-~g~~~ 133 (156)
.+++|-|-...- .+.+-....+..++|++|.+=+||.|+..+... .++++..+++..|.+ .|++.
T Consensus 251 ~~i~iH~E~As~----~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~~le~ 326 (453)
T PRK14039 251 EKLRIHAELGHF----ASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQLASESGLQR 326 (453)
T ss_pred CCceEEEEecCc----ccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHcCCCE
Confidence 457888877642 344555566778999999999999999998764 133444445566665 68776
Q ss_pred EEE
Q 040166 134 LLV 136 (156)
Q Consensus 134 vvi 136 (156)
++|
T Consensus 327 l~v 329 (453)
T PRK14039 327 LII 329 (453)
T ss_pred EEE
Confidence 554
No 85
>PRK10565 putative carbohydrate kinase; Provisional
Probab=88.16 E-value=8.8 Score=31.28 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHh--hhhCcEEecCHHHHhHhhCC
Q 040166 56 IAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISI--WDEADMIKISEEELTLLIEG 113 (156)
Q Consensus 56 ~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~--l~~~dil~~n~~E~~~l~g~ 113 (156)
..+++.+++.++++++|+.- ...+... .....++.+|..|+..|++.
T Consensus 337 ~~~~~~~~~~~~P~VLDAda-----------L~ll~~~~~~~~~~VLTPh~gE~~rL~~~ 385 (508)
T PRK10565 337 KKALQKVENFRKPMLWDADA-----------LNLLAINPDKRHNRVITPHPGEAARLLGC 385 (508)
T ss_pred HHHHHHHHhcCCCEEEEchH-----------HHHHhhCccccCCeEECCCHHHHHHHhCC
Confidence 34456667778999999951 1112110 11246999999999999984
No 86
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=4.9 Score=29.70 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEec----CHHH-HhHhhCCCCCCchHHHHHH
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKI----SEEE-LTLLIEGCDASDDNVVLEK 125 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~----n~~E-~~~l~g~~~~~~~~~~~~~ 125 (156)
..+.+..+++.+++.|..+.+|.|-- . .+ +.++++++++|.+.. ..++ ...++|... +...+.++.
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~---~--~~---~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~-~~vl~~~~~ 167 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGF---L--PP---EALEELLPLLDAVLLDLKAFDDELYRKLTGADN-EPVLENLEL 167 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCC---C--CH---HHHHHHHhhcCeEEEeeccCChHHHHHHhCCCc-HHHHHHHHH
Confidence 56778899999999999999999732 1 11 234677777777743 3334 777777544 333333455
Q ss_pred HHhCCCc
Q 040166 126 LFHSNLK 132 (156)
Q Consensus 126 l~~~g~~ 132 (156)
+.+.|+.
T Consensus 168 l~~~g~~ 174 (260)
T COG1180 168 LADLGVH 174 (260)
T ss_pred HHcCCCe
Confidence 5555653
No 87
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=87.02 E-value=7.9 Score=28.78 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=52.8
Q ss_pred chhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC--CCCCchHHHHHH
Q 040166 48 LKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEG--CDASDDNVVLEK 125 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~--~~~~~~~~~~~~ 125 (156)
++.....+..+++..+..++++++|.. .+|- .++..+.+..-.+. -++.+|--|+..|++. .+.+ ....+..
T Consensus 114 dp~~~k~i~~iley~~~~dvP~VIDaD---GL~L-v~q~~e~l~~~~~~-viLTPNvvEFkRLcd~~l~~~d-~~~~~~~ 187 (306)
T KOG3974|consen 114 DPAILKEIAKILEYLRGKDVPLVIDAD---GLWL-VEQLPERLIGGYPK-VILTPNVVEFKRLCDAELDKVD-SHSQMQH 187 (306)
T ss_pred CHHHHHHHHHHHHHHhcCCCcEEEcCC---ceEe-hhhchhhhhccCce-eeeCCcHHHHHHHHHHhhcccc-chHHHHH
Confidence 444566788899999999999999995 3553 22211212121222 5789999999999986 2221 1111233
Q ss_pred HHhCCCcEEEEeecCCceE
Q 040166 126 LFHSNLKLLLVTEGSNGCK 144 (156)
Q Consensus 126 l~~~g~~~vvit~G~~G~~ 144 (156)
|...-.+..|+--|+.-.+
T Consensus 188 L~~~l~nv~vvqKG~~D~i 206 (306)
T KOG3974|consen 188 LAAELMNVTVVQKGESDKI 206 (306)
T ss_pred HHHHhcCeEEEEecCCcee
Confidence 3322123455555655543
No 88
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=86.23 E-value=9.9 Score=30.65 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=63.5
Q ss_pred ChhhhhcCCc--C-chhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhh-hhCcEEecCHHHHhHhhC
Q 040166 37 DVNLIEKASI--L-LKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIW-DEADMIKISEEELTLLIE 112 (156)
Q Consensus 37 ~~~~l~~~~~--~-~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l-~~~dil~~n~~E~~~l~g 112 (156)
..+++ .+++ + ...+...+.++++ ++.+...|.|.|..- ....+.++.++ .-++.+.+|..|+.....
T Consensus 420 ~~dl~-~a~~I~~DsNiS~~~Ma~il~-ak~~k~~V~fEPTd~-------~k~~K~fk~l~v~~i~~i~PN~~Ell~a~k 490 (614)
T KOG3009|consen 420 NEDLL-SADFILLDSNISVPVMARILE-AKKHKKQVWFEPTDI-------DKVKKVFKTLLVGAITAISPNANELLKAAK 490 (614)
T ss_pred hhhhh-cCCEEEEcCCCCHHHHHHHHH-hhhccCceEecCCCc-------hhhhhhhhhcceeeEEeeCCCHHHHHHHhh
Confidence 34555 6666 3 2345567778888 888999999999632 22233333333 247999999999854433
Q ss_pred CC----CC------CchHHHHHHHH---hCCCcEEEEeecCCceEEEecC
Q 040166 113 GC----DA------SDDNVVLEKLF---HSNLKLLLVTEGSNGCKYYTQE 149 (156)
Q Consensus 113 ~~----~~------~~~~~~~~~l~---~~g~~~vvit~G~~G~~~~~~~ 149 (156)
.. ++ +......+++. ..+....|+|+-.+|+++...+
T Consensus 491 ~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~ 540 (614)
T KOG3009|consen 491 LCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRN 540 (614)
T ss_pred cCceeeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecC
Confidence 21 11 11111122222 2567789999999999887654
No 89
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=83.43 E-value=8.3 Score=30.87 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=36.3
Q ss_pred HHHHHHHHH-HcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhC
Q 040166 55 HIAAMEMAK-TSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIE 112 (156)
Q Consensus 55 ~~~~~~~a~-~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g 112 (156)
+.+.++..+ ..+++|-|-... ..+.+-....+..++|++|-+=+||.|+..++.
T Consensus 238 ~~~~i~~l~~~~~~~iH~E~As----~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 238 LKEQIKLLKSNPDIPIHLELAS----FADEELRKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp HHHHHHHHH-HTT-EEEEE--------SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred HHHHHHhccCCCCCceEEEecc----ccCHHHHHHHHHHhhccccccccCHHHHHHHHH
Confidence 344444455 688999998864 234454556677999999999999999998754
No 90
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=80.18 E-value=16 Score=29.52 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=44.9
Q ss_pred HcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhh---CC----------CCCCchHHHHHHHHh-C
Q 040166 64 TSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLI---EG----------CDASDDNVVLEKLFH-S 129 (156)
Q Consensus 64 ~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~---g~----------~~~~~~~~~~~~l~~-~ 129 (156)
..++++-|-...- .+.+-....+..++|++|-+=+||.|+..+. |. .++++..+.+..|++ .
T Consensus 262 ~~~i~iH~E~As~----~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~~ 337 (463)
T PRK03979 262 NKDIKIHVEFASI----QNREIRKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKILLDEL 337 (463)
T ss_pred CCCceEEEEeccc----cCHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHHc
Confidence 4578888877642 2344444566788999999999999999765 32 123444445566665 5
Q ss_pred CCcEEEE
Q 040166 130 NLKLLLV 136 (156)
Q Consensus 130 g~~~vvi 136 (156)
|++.+.|
T Consensus 338 ~leri~v 344 (463)
T PRK03979 338 NLERVQV 344 (463)
T ss_pred CCCEEEE
Confidence 7665443
No 91
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=77.15 E-value=9.5 Score=26.46 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHh
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELT 108 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~ 108 (156)
+.+.+..+.+.++..|+.|..||.+. .+..|..+.+.+|.+-.++.+..++.
T Consensus 34 ~~~~i~~i~~~~~~rgVIIfTDpD~~------GekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 34 KDETINLIKKAQKKQGVIILTDPDFP------GEKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CHHHHHHHHHHhhcCCEEEEeCCCCc------hHHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 34555566566777899999999863 46778888888999999999999875
No 92
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=73.61 E-value=32 Score=25.62 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEec-----CHHHHhHhhCCCCCCchHHHHHHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKI-----SEEELTLLIEGCDASDDNVVLEKL 126 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~-----n~~E~~~l~g~~~~~~~~~~~~~l 126 (156)
.+.+.++++.+++.|..+.++.|-- +. . +.+.++++++|++.. +++....+.|. +.+...+.++.+
T Consensus 140 ~~~l~~l~~~~k~~g~~~~i~TnG~---~~-~----~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~-~~~~vl~~i~~l 210 (295)
T TIGR02494 140 PEFALALLQACHERGIHTAVETSGF---TP-W----ETIEKVLPYVDLFLFDIKHLDDERHKEVTGV-DNEPILENLEAL 210 (295)
T ss_pred HHHHHHHHHHHHHcCCcEeeeCCCC---CC-H----HHHHHHHhhCCEEEEeeccCChHHHHHHhCC-ChHHHHHHHHHH
Confidence 3445678888999999899988731 11 1 335666777887653 44455556664 222333334556
Q ss_pred HhCCCcE
Q 040166 127 FHSNLKL 133 (156)
Q Consensus 127 ~~~g~~~ 133 (156)
.+.+.+.
T Consensus 211 ~~~~~~~ 217 (295)
T TIGR02494 211 AAAGKNV 217 (295)
T ss_pred HhCCCcE
Confidence 6556443
No 93
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.84 E-value=34 Score=25.22 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=52.0
Q ss_pred CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHH-----hHhhCC--------
Q 040166 47 LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEEL-----TLLIEG-------- 113 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~-----~~l~g~-------- 113 (156)
+.....+-+..+.+.+++.|+.++-++-. .. .++.+.+++|++...-.+. ....+.
T Consensus 60 f~G~G~~gl~~L~~~~~~~Gl~~~Tev~d-------~~----~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk 128 (250)
T PRK13397 60 FQGLGLQGIRYLHEVCQEFGLLSVSEIMS-------ER----QLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFK 128 (250)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeeCC-------HH----HHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEe
Confidence 33445567777888888999999888852 22 2444556799997654332 222221
Q ss_pred ----CCCCchHHHHHHHHhCCCcEEEEee-cCCc
Q 040166 114 ----CDASDDNVVLEKLFHSNLKLLLVTE-GSNG 142 (156)
Q Consensus 114 ----~~~~~~~~~~~~l~~~g~~~vvit~-G~~G 142 (156)
.++++...+++++.+.|.+.+++.. |-.|
T Consensus 129 ~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 129 RGLMATIEEYLGALSYLQDTGKSNIILCERGVRG 162 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCC
Confidence 2344544456777777877777776 6544
No 94
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=72.17 E-value=18 Score=24.25 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEE 106 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E 106 (156)
..+.+..+++.+++.|..+.++.|..+ + +..+++++++|+++...-.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~------~---~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEP------K---DIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC------H---HHHHHHHHhCCEEEEChHH
Confidence 445677888889999999999988532 1 2356778999999988853
No 95
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=71.16 E-value=36 Score=24.53 Aligned_cols=54 Identities=19% Similarity=0.141 Sum_probs=35.9
Q ss_pred cCCc---CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEec
Q 040166 43 KASI---LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKI 102 (156)
Q Consensus 43 ~~~~---~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~ 102 (156)
++++ +.-.+.+++..+++.+++.|+.+..|+-. .|+ ++.....+++ -.+|++..
T Consensus 80 GAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~---~~~-~~~~~~~l~~--~gvd~~~~ 136 (217)
T COG0269 80 GADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIG---VWD-PEQRAKWLKE--LGVDQVIL 136 (217)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeec---CCC-HHHHHHHHHH--hCCCEEEE
Confidence 4455 44556788999999999999999999932 132 4444445554 35666644
No 96
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=69.87 E-value=40 Score=24.60 Aligned_cols=82 Identities=12% Similarity=0.002 Sum_probs=45.4
Q ss_pred HHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHH---hhhhCcEEecCHHHHhHhhCCCC--CCchHHHHHHHHh-CCC
Q 040166 58 AMEMAKTSGCILSYDPNARLLPWPSAEAARGGIIS---IWDEADMIKISEEELTLLIEGCD--ASDDNVVLEKLFH-SNL 131 (156)
Q Consensus 58 ~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~---~l~~~dil~~n~~E~~~l~g~~~--~~~~~~~~~~l~~-~g~ 131 (156)
+++...+...++++|.. ....+.. ....--++.|+..|+..|++... .++-.+.++++.+ +++
T Consensus 86 ~~~~~~~~~~p~VlDAD-----------aL~~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~~~~~~~~~~a~~~a~~~~~ 154 (242)
T PF01256_consen 86 LLEELLESDKPLVLDAD-----------ALNLLAENPKKRNAPVILTPHPGEFARLLGKSVEIQEDRIEAAREFAKEYGA 154 (242)
T ss_dssp HHHHHHHHCSTEEEECH-----------HHHCHHHCCCCSSSCEEEE-BHHHHHHHHTTTCHHCCSHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcceEEEehH-----------HHHHHHhccccCCCCEEECCCHHHHHHHhCCcccchhhHHHHHHHHHhhcCc
Confidence 44555556778999995 1112222 24557788999999999999754 2222223455544 343
Q ss_pred cEEEEeecCCceEEEecCeee
Q 040166 132 KLLLVTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 132 ~~vvit~G~~G~~~~~~~~~~ 152 (156)
+|+=-|..-.....+++.+
T Consensus 155 --~vvLKG~~t~I~~p~~~~~ 173 (242)
T PF01256_consen 155 --VVVLKGAVTIIASPGGRVY 173 (242)
T ss_dssp --EEEEESTSSEEEEETSEEE
T ss_pred --EEEEeCCCcEEEecCccee
Confidence 4444455444433244443
No 97
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=68.08 E-value=7.8 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=22.2
Q ss_pred ecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEE
Q 040166 101 KISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLL 135 (156)
Q Consensus 101 ~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vv 135 (156)
+.+.+|+..|+|..-+..- ++.|...|+..++
T Consensus 2 fLT~~El~elTG~k~~~~Q---~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQ---IRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCCCHHHH---HHHHHHCCCeeEE
Confidence 5789999999997654322 3667677876443
No 98
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=65.35 E-value=30 Score=27.82 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=31.7
Q ss_pred CeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhC
Q 040166 67 CILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIE 112 (156)
Q Consensus 67 ~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g 112 (156)
++|=|-...- .+.+-....+..++|++|-+=+||.|+..+..
T Consensus 245 i~iH~E~As~----~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~ 286 (445)
T cd01938 245 IPIHLELAST----VDEELREEILHEVVPYVDSLGLNEQELANLLQ 286 (445)
T ss_pred CcEEEEeccc----ccHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 7777777542 23444556677889999999999999998873
No 99
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=57.11 E-value=14 Score=25.82 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=34.7
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH--HhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCCc
Q 040166 69 LSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEE--LTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSNG 142 (156)
Q Consensus 69 i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E--~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~G 142 (156)
|.+|+. .++-++.+.+++..+|+++-|..- ++. +|.. . +.|.+.+++.|.+..-.-|
T Consensus 1 V~lDl~--------~~~gr~~l~~L~~~ADV~i~n~rpg~~~~-lGl~----~----~~l~~~nP~LV~~~isgfG 59 (191)
T PF02515_consen 1 VALDLK--------SPEGRAALRRLLATADVVIENFRPGVLER-LGLD----Y----EALRAINPRLVYCSISGFG 59 (191)
T ss_dssp EEEETT--------SHHHHHHHHHHHHT-SEEEEESSTTHHHH-TT-S----H----HHHHHH-TT-EEEEEESS-
T ss_pred CEeeCc--------CHHHHHHHHHHHHhCCEEEECCchhhhHh-cCCC----H----HHHHhhCCCCeEEEEEeec
Confidence 567776 356788999999999999988762 111 1211 1 4566678888888765544
No 100
>smart00642 Aamy Alpha-amylase domain.
Probab=55.66 E-value=18 Score=24.76 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+.+..+++.++++|+.|++|...
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Confidence 466889999999999999999964
No 101
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=55.27 E-value=26 Score=26.60 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEee
Q 040166 90 IISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTE 138 (156)
Q Consensus 90 l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~ 138 (156)
.++++...|.+++..+-..++ |...++...+.+..|.+.|.+.+++|.
T Consensus 15 ~~e~l~~~DtfifDcDGVlW~-g~~~ipGs~e~l~~L~~~gK~i~fvTN 62 (306)
T KOG2882|consen 15 ARELLDSFDTFIFDCDGVLWL-GEKPIPGSPEALNLLKSLGKQIIFVTN 62 (306)
T ss_pred HHHHHhhcCEEEEcCCcceee-cCCCCCChHHHHHHHHHcCCcEEEEeC
Confidence 455667777777777766655 444444444445666666655555553
No 102
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=54.60 E-value=27 Score=27.55 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhh-CcEEecCHHHH
Q 040166 55 HIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDE-ADMIKISEEEL 107 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~-~dil~~n~~E~ 107 (156)
..++++.++++|+++++|.+.... .+ -.+.+++.+.. +|++..|-+-+
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~-v~----~e~~l~~~la~GaDLV~~SgdKl 224 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGAL-VD----KEPDLREALALGADLVSFSGDKL 224 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccc-cc----cccchhHHHhcCCCEEEEecchh
Confidence 457888899999999999985211 00 01235666665 99999988743
No 103
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=53.26 E-value=1.3e+02 Score=24.83 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCeEEE---ecCCCCCCCCCHHHHHHHHHHhhhh-CcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCC
Q 040166 55 HIAAMEMAKTSGCILSY---DPNARLLPWPSAEAARGGIISIWDE-ADMIKISEEELTLLIEGCDASDDNVVLEKLFHSN 130 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~---D~~~r~~~~~~~~~~~~~l~~~l~~-~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g 130 (156)
..+.+..++..|++++. |....|+ .+.....++++... +|+++.--- -.+.++...+++...+.+
T Consensus 124 ~~~~~~~~~~~~~~vI~S~H~f~~tP~----~~el~~~~~~~~~~gaDi~Kia~~-------~~~~~D~~~ll~~~~~~~ 192 (529)
T PLN02520 124 FINSISGKKPEKCKVIVSSHNYENTPS----VEELGNLVARIQATGADIVKIATT-------ALDITDVARMFQITVHSQ 192 (529)
T ss_pred HHHHHHhhhhcCCEEEEEecCCCCCCC----HHHHHHHHHHHHHhCCCEEEEecC-------CCCHHHHHHHHHHHhhcC
Confidence 34455556666777766 5544432 23444455554443 677765210 011222222222222346
Q ss_pred CcEEEEeecCCceE
Q 040166 131 LKLLLVTEGSNGCK 144 (156)
Q Consensus 131 ~~~vvit~G~~G~~ 144 (156)
.+.+.+-+|..|..
T Consensus 193 ~p~i~~~MG~~G~~ 206 (529)
T PLN02520 193 VPTIGLVMGERGLI 206 (529)
T ss_pred CCEEEEecCCCCch
Confidence 67888899999964
No 104
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=52.43 E-value=55 Score=21.49 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHh
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLL 110 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l 110 (156)
.+.+..+.+..+..|+.+..||... .+..+..+.+.++.+--++++......+
T Consensus 43 ~~~ie~i~~~~~~k~VIILTD~D~~------Ge~Irk~l~~~l~~~~~~~id~~~~~~~ 95 (127)
T COG1658 43 LETIELIKKAQKYKGVIILTDPDRK------GERIRKKLKEYLPGAKGAFIDREIRNKL 95 (127)
T ss_pred HHHHHHHHHhhccCCEEEEeCCCcc------hHHHHHHHHHHhcccccccccHHHhhhc
Confidence 4445555555567889999999864 4677888889899988899999998885
No 105
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=52.34 E-value=17 Score=27.28 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH
Q 040166 50 PRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEE 106 (156)
Q Consensus 50 ~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E 106 (156)
.+.+-+..+.+.++++|+++.+|..- +|.........+.++..++|.+.++-.-
T Consensus 142 ~s~~el~ai~~~a~~~gl~lhmDGAR---l~~a~~~~~~~~~e~~~~~D~v~~~~tK 195 (290)
T PF01212_consen 142 YSLEELRAISELAREHGLPLHMDGAR---LANAAAALGVSLAEIAAGADSVSFGGTK 195 (290)
T ss_dssp --HHHHHHHHHHHHHHT-EEEEEETT---HHHHHCHHHHHHHHHHTTSSEEEEETTS
T ss_pred CCHHHHHHHHHHHHhCceEEEEehhh---HHHhhhcccccHHHHhhhCCEEEEEEEc
Confidence 44667888889999999999999962 2322223446688889999999776653
No 106
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=52.22 E-value=53 Score=25.97 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=40.2
Q ss_pred cCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH-HhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecCC
Q 040166 65 SGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEE-LTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGSN 141 (156)
Q Consensus 65 ~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E-~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~~ 141 (156)
....|.+|+. .++.++.+.++++.+|+++-|..- ...=+|.. . +.|.+.+++.|.++.-.-
T Consensus 65 gKrsi~LDLk--------~~~Gr~~l~~Li~~ADVvien~rpg~~~rlGl~----~----e~L~~~nP~LIy~sisgf 126 (405)
T PRK03525 65 NLHALSLNIF--------KDEGREAFLKLMETTDIFIEASKGPAFARRGIT----D----EVLWEHNPKLVIAHLSGF 126 (405)
T ss_pred CCeeEEEeCC--------CHHHHHHHHHHHHhCCEEEECCCccHHHHcCCC----H----HHHHHhCCCeEEEEeeEC
Confidence 3456888886 356788999999999999988532 22222321 1 456667888877775433
No 107
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=51.04 E-value=95 Score=22.65 Aligned_cols=81 Identities=6% Similarity=0.056 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHcCCeEEEec---CCCCCCCCCHHHHHHHHHHhhhh-CcEEec-----CHHHHhHhhCCCCCCchHH
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDP---NARLLPWPSAEAARGGIISIWDE-ADMIKI-----SEEELTLLIEGCDASDDNV 121 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~---~~r~~~~~~~~~~~~~l~~~l~~-~dil~~-----n~~E~~~l~g~~~~~~~~~ 121 (156)
..+...++++.++..|+++++-- ..-|+ .+.....+.++..+ +|+++. +..+...++. +
T Consensus 110 ~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~----~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~------~-- 177 (238)
T PRK13575 110 DIEKHQRLITHLQQYNKEVVISHHNFESTPP----LDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQ------A-- 177 (238)
T ss_pred ChHHHHHHHHHHHHcCCEEEEecCCCCCCCC----HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHH------H--
Confidence 34566777888888888887733 32232 23444555555554 788875 2233333321 1
Q ss_pred HHHHHHh-CCCcEEEEeecCCceE
Q 040166 122 VLEKLFH-SNLKLLLVTEGSNGCK 144 (156)
Q Consensus 122 ~~~~l~~-~g~~~vvit~G~~G~~ 144 (156)
.....+ .+.+.+.+.+|..|..
T Consensus 178 -~~~~~~~~~~p~i~i~MG~~G~i 200 (238)
T PRK13575 178 -MSTFSDTMDCKVVGISMSKLGLI 200 (238)
T ss_pred -HHHHHhccCCCEEEEeCCCCCch
Confidence 112222 3567899999999964
No 108
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=49.09 E-value=55 Score=22.61 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCeEEE---ecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 55 HIAAMEMAKTSGCILSY---DPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~---D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
+.++++.+.+.|+.|++ |.+++-..|.. +..|++++|-+.
T Consensus 92 i~~l~~~~~~~g~~Vi~~GL~~df~~~~F~~-------~~~Ll~~Ad~i~ 134 (176)
T PF00265_consen 92 IVQLVEILANKGIPVICAGLDTDFRGEPFGG-------SPRLLPLADKIT 134 (176)
T ss_dssp HHHHHHHHHHTT-EEEEEEESB-TTSSB-TT-------HHHHHHH-SEEE
T ss_pred HHHHHHHHHhCCCeEEEEeeCCccccCcchh-------HHHHHhhCCeEE
Confidence 45677778889998875 78888777753 456678888664
No 109
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=48.70 E-value=99 Score=22.18 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhh-CcEEec-----CHHHHhHhhCCCCCCchHHHHHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDE-ADMIKI-----SEEELTLLIEGCDASDDNVVLEK 125 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~-~dil~~-----n~~E~~~l~g~~~~~~~~~~~~~ 125 (156)
.+...++++.++..+++++.---.-..-|+ .+.....+.++..+ +|+++. +..+...++. + .++
T Consensus 104 ~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~-~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~------~---~~~ 173 (228)
T TIGR01093 104 DDAVKELINIAKKGGTKIIMSYHDFQKTPS-WEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLE------I---TNK 173 (228)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHH------H---HHH
Confidence 344567777777888888774422122233 34455666666665 888876 3334433331 1 122
Q ss_pred HHh-CCCcEEEEeecCCceE
Q 040166 126 LFH-SNLKLLLVTEGSNGCK 144 (156)
Q Consensus 126 l~~-~g~~~vvit~G~~G~~ 144 (156)
+.+ ...+.+.+-+|+.|..
T Consensus 174 ~~~~~~~p~i~~~MG~~G~~ 193 (228)
T TIGR01093 174 VDEHADVPLITMSMGDRGKI 193 (228)
T ss_pred HHhcCCCCEEEEeCCCCChh
Confidence 222 2467899999999965
No 110
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=48.70 E-value=27 Score=25.58 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNAR 76 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r 76 (156)
.+-++++++.+++.|+.|++|....
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred hhhhhhhhhccccccceEEEeeecc
Confidence 5668899999999999999999643
No 111
>PTZ00445 p36-lilke protein; Provisional
Probab=47.26 E-value=97 Score=22.41 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHcCCeEE-EecC
Q 040166 51 RRSAHIAAMEMAKTSGCILS-YDPN 74 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~-~D~~ 74 (156)
..+....+.+..++.|++++ +|..
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~D~D 51 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIASDFD 51 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecch
Confidence 34555667777888998754 4764
No 112
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=46.89 E-value=91 Score=21.28 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHcCCeEEE
Q 040166 52 RSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~ 71 (156)
.+.+..+++.+.+.+..++|
T Consensus 34 ~dl~~~l~~~~~~~~~~ifl 53 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFL 53 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 34445555555555555555
No 113
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=46.75 E-value=1.2e+02 Score=23.60 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhH-----hhC-----------
Q 040166 49 KPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTL-----LIE----------- 112 (156)
Q Consensus 49 ~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~-----l~g----------- 112 (156)
....+-+..+.+.+++.|+.++-++-. .. .+..+.+++|++...-.+... ..+
T Consensus 165 g~~~e~l~~L~~~~~~~Gl~~~t~v~d-------~~----~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 165 GLGVEGLKILKQVADEYGLAVISEIVN-------PA----DVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCC-------HH----HHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCC
Confidence 334566677778889999999888852 21 234444568888765443322 111
Q ss_pred C-CCCCchHHHHHHHHhCCCcEEEEee-cCC
Q 040166 113 G-CDASDDNVVLEKLFHSNLKLLLVTE-GSN 141 (156)
Q Consensus 113 ~-~~~~~~~~~~~~l~~~g~~~vvit~-G~~ 141 (156)
. .++++...+++.+.+.|.+.+++.. |-.
T Consensus 234 ~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s 264 (360)
T PRK12595 234 LSATIEEFIYAAEYIMSQGNGQIILCERGIR 264 (360)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEECCccC
Confidence 1 2444544445677777776676664 543
No 114
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=46.64 E-value=1e+02 Score=21.87 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecC-----HHHHhHhhCCCCCCchHHHHHHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKIS-----EEELTLLIEGCDASDDNVVLEKL 126 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n-----~~E~~~l~g~~~~~~~~~~~~~l 126 (156)
.+.+..+++.+++.|..+.+..|-....+ .+.+.++++.+|.+.++ .+....+.|. +.+...+.++.+
T Consensus 80 ~~~~~~li~~~~~~g~~~~i~TNG~~~~~------~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l 152 (235)
T TIGR02493 80 PEFLSELFKACKELGIHTCLDTSGFLGGC------TEAADELLEYTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYL 152 (235)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCCCcc------HHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHH
Confidence 34456788888899988888876321101 13456667777877654 3444445554 443444445666
Q ss_pred HhCCCcE
Q 040166 127 FHSNLKL 133 (156)
Q Consensus 127 ~~~g~~~ 133 (156)
.+.|...
T Consensus 153 ~~~g~~~ 159 (235)
T TIGR02493 153 AKRNKPI 159 (235)
T ss_pred HhCCCcE
Confidence 6666653
No 115
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=44.88 E-value=1.2e+02 Score=22.12 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCeEEE-ecCCCCCCCCCHHHHHHHHHHhhhh-CcEEecCHHHHhHhhCCCCCCchHHHHHHHHh--
Q 040166 53 SAHIAAMEMAKTSGCILSY-DPNARLLPWPSAEAARGGIISIWDE-ADMIKISEEELTLLIEGCDASDDNVVLEKLFH-- 128 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~-D~~~r~~~~~~~~~~~~~l~~~l~~-~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~-- 128 (156)
+...++++.++++|+.+|+ |...-|+ .+...+.+.++... +|++++--- -.+.++...+++....
T Consensus 105 ~~~~~~~~~~~~~~vI~SyH~F~~TP~----~~~i~~~l~km~~~~aDivKiAvm-------~~~~~DvL~ll~~~~~~~ 173 (231)
T COG0710 105 DDVKEIIKFAKKHGVIVSYHDFEKTPP----LEEIIERLDKMESLGADIVKIAVM-------PQSKEDVLDLLEATREFK 173 (231)
T ss_pred hhHHHHHhccccCCEEEEeccCCCCCc----HHHHHHHHHHHHhhCCCeEEEEec-------CCCHHHHHHHHHHHHhcc
Confidence 3345677777777755555 4444333 23455666666654 487764110 0112222223343333
Q ss_pred -CCCcEEEEeecCCceEE
Q 040166 129 -SNLKLLLVTEGSNGCKY 145 (156)
Q Consensus 129 -~g~~~vvit~G~~G~~~ 145 (156)
.+.+.+.+-||..|..-
T Consensus 174 ~~~~p~i~i~MG~~G~~S 191 (231)
T COG0710 174 EAEKPVITISMGKTGKIS 191 (231)
T ss_pred ccCCCEEEEecCCCCchh
Confidence 57789999999998763
No 116
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=43.89 E-value=39 Score=26.79 Aligned_cols=63 Identities=10% Similarity=0.016 Sum_probs=39.8
Q ss_pred HHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH-HhHhhCCCCCCchHHHHHHHHhCCCcEEEEeecC
Q 040166 62 AKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEE-LTLLIEGCDASDDNVVLEKLFHSNLKLLLVTEGS 140 (156)
Q Consensus 62 a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E-~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~G~ 140 (156)
.++....|.+|+. .++.++.++++++.+|+++-|..- ...=+|.. . +.|.+.+++.|.++...
T Consensus 62 ~nr~Krsi~lDLk--------~~~g~~~l~~Lv~~ADVvien~rpg~~~rlGL~----~----~~L~~~nP~LV~~sisg 125 (415)
T TIGR03253 62 LNCNKRSITLNTK--------TPEGKEVLEELIKKADVMVENFGPGALDRMGFT----W----EYIQEINPRLILASIKG 125 (415)
T ss_pred hCCCCeEEEeeCC--------CHHHHHHHHHHHhhCCEEEECCCCChHHHcCCC----H----HHHHHhCCCeEEEEeee
Confidence 3344456788886 345678899999999999988743 11111211 1 45566677777776543
No 117
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=43.55 E-value=28 Score=21.35 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecC
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
..+....+++.|+++|+++.-|+.
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~ 53 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPL 53 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHH
Confidence 345667899999999999877774
No 118
>PRK02126 ribonuclease Z; Provisional
Probab=42.92 E-value=78 Score=24.36 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=38.3
Q ss_pred cCCeEEE--ecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH------HhHhhCCCCCCchHHHHHHHHhCCCcEEEE
Q 040166 65 SGCILSY--DPNARLLPWPSAEAARGGIISIWDEADMIKISEEE------LTLLIEGCDASDDNVVLEKLFHSNLKLLLV 136 (156)
Q Consensus 65 ~g~~i~~--D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E------~~~l~g~~~~~~~~~~~~~l~~~g~~~vvi 136 (156)
.|..++| |..+.+..| +.+.++++.+|+++....- ...-.+..+++++. +.....|++.+++
T Consensus 241 ~g~~v~y~gDT~~~~~~~-------~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~---~lA~~a~vk~LvL 310 (334)
T PRK02126 241 PGQKIGYVTDIGYTEENL-------ARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAG---RLAREAGVKRLLP 310 (334)
T ss_pred CCCEEEEECCCCCCcccH-------HHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHH---HHHHHcCCCEEEE
Confidence 4556666 444333222 3356778899999874321 11223455666653 2233468999999
Q ss_pred eecCC
Q 040166 137 TEGSN 141 (156)
Q Consensus 137 t~G~~ 141 (156)
|.=+.
T Consensus 311 tH~sp 315 (334)
T PRK02126 311 FHFSP 315 (334)
T ss_pred EecCc
Confidence 96554
No 119
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=42.44 E-value=39 Score=26.82 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=38.0
Q ss_pred HHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHH-hHhhCCCCCCchHHHHHHHHhCCCcEEEEee
Q 040166 63 KTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEEL-TLLIEGCDASDDNVVLEKLFHSNLKLLLVTE 138 (156)
Q Consensus 63 ~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~-~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~ 138 (156)
++...-|.+|+. .++.++.+++++..+|+++-|..-- ..=+|.. . +.|.+.+++.|.++.
T Consensus 64 NrgKrsi~lDLk--------~~eGr~~l~~Lv~~ADVvien~rpg~~~rlGl~----~----e~L~~~nP~LI~~si 124 (416)
T PRK05398 64 NSNKRSITLDTK--------TPEGKEVLEKLIREADVLVENFGPGALDRMGFT----W----ERIQEINPRLIVASI 124 (416)
T ss_pred CCCCeEEEeeCC--------CHHHHHHHHHHHhcCCEEEECCCcchHHHcCCC----H----HHHHhhCcCEEEEEE
Confidence 334456788886 3567788999999999999885421 1112211 1 456666777777653
No 120
>PRK11430 putative CoA-transferase; Provisional
Probab=40.78 E-value=44 Score=26.20 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=39.2
Q ss_pred HHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHH-hHhhCCCCCCchHHHHHHHHhCCCcEEEEee
Q 040166 62 AKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEEL-TLLIEGCDASDDNVVLEKLFHSNLKLLLVTE 138 (156)
Q Consensus 62 a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~-~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~ 138 (156)
.++....|.+|+. .++.++.+.++++.+|+++-|..-- ..=+|. +. +.|.+.+++.|.++.
T Consensus 67 ~NrgKrsv~lDLk--------~~~Gr~~~~~L~~~ADVvien~rpg~~~rlGl-~y-------~~L~~~nP~LI~~si 128 (381)
T PRK11430 67 INHGKESVVLDLK--------NDHDKSIFINMLKQADVLAENFRPGTMEKLGF-SW-------ETLQEINPRLIYASS 128 (381)
T ss_pred hCCCCeEEEecCC--------CHHHHHHHHHHHhcCCEEEeCCCccHHHHcCC-CH-------HHHHHHCCCceEEee
Confidence 3334456788886 2556788999999999999887621 111122 11 455666777777775
No 121
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=40.32 E-value=40 Score=18.82 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=13.9
Q ss_pred CcceEEEEEeeCCCceeeee
Q 040166 2 QGLHWLFVTLTAEGERGFMF 21 (156)
Q Consensus 2 ~~t~~~~v~~~~~g~r~~~~ 21 (156)
.++..+||+++.+|.|.+-+
T Consensus 41 ~~~~f~FvLT~~~G~r~Yg~ 60 (65)
T PF03456_consen 41 PPQFFSFVLTDEDGSRLYGY 60 (65)
T ss_dssp SSCEEEEEEE-TTS-EEEEE
T ss_pred CCeEEEEEEECCCCCEEEEE
Confidence 35778899999999988643
No 122
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=39.71 E-value=48 Score=23.98 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEecCC
Q 040166 49 KPRRSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 49 ~~~~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
+...+.+.++++.+++.|+.|++|+..
T Consensus 58 ~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 58 ETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 446678899999999999999999954
No 123
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=38.82 E-value=56 Score=23.63 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
......+++++.|+.|++.-+=+|...+ .+.++.+|+.+|++.
T Consensus 94 ~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--------~~~i~~~l~~vD~Vl 136 (220)
T COG0036 94 ATEHIHRTIQLIKELGVKAGLVLNPATP--------LEALEPVLDDVDLVL 136 (220)
T ss_pred cCcCHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhhCCEEE
Confidence 3445677888889999987665553221 245788889999884
No 124
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=38.28 E-value=1.6e+02 Score=21.73 Aligned_cols=77 Identities=10% Similarity=0.049 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhH------hhCC----------C
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTL------LIEG----------C 114 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~------l~g~----------~ 114 (156)
..+-+..+.+.+++.|+.++-++-. .. .++.+.+.+|++...-.+... +... .
T Consensus 74 g~~gl~~l~~~~~~~Gl~~~t~~~d-------~~----~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~ 142 (260)
T TIGR01361 74 GEEGLKLLRRAADEHGLPVVTEVMD-------PR----DVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMG 142 (260)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeeCC-------hh----hHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCC
Confidence 4555666777788999999888852 11 133444568888765443322 2111 1
Q ss_pred -CCCchHHHHHHHHhCCCcEEEEee
Q 040166 115 -DASDDNVVLEKLFHSNLKLLLVTE 138 (156)
Q Consensus 115 -~~~~~~~~~~~l~~~g~~~vvit~ 138 (156)
++++...+++.+.+.|.+.+++..
T Consensus 143 ~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 143 NTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 445554456777777776666654
No 125
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=37.88 E-value=1.4e+02 Score=22.28 Aligned_cols=65 Identities=6% Similarity=0.135 Sum_probs=42.8
Q ss_pred ccccccCChhhhhcCCc-CchhhHHHHHHHHHHHHHcCC---eEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEE
Q 040166 30 LLCEAELDVNLIEKASI-LLKPRRSAHIAAMEMAKTSGC---ILSYDPNARLLPWPSAEAARGGIISIWDEADMI 100 (156)
Q Consensus 30 ~l~~~~i~~~~l~~~~~-~~~~~~~~~~~~~~~a~~~g~---~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil 100 (156)
.+++++|....+...++ +++...+....+++.+.+.|+ .|.+|.-- .+..+.+.|++-.|-+-+.
T Consensus 99 ~isP~~IS~~Ml~r~kynLNevshdsam~LI~~v~~~gvnvteiyVDTVG------pp~~Yq~kLek~FP~~k~t 167 (301)
T KOG2299|consen 99 CISPREISASMLRRNKYNLNEVSHDSAMGLIDEVLDQGVNVTEIYVDTVG------PPAKYQEKLEKRFPGIKFT 167 (301)
T ss_pred ecCHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhCCceEEEEEecCC------ChHHHHHHHHhhCCCeEEE
Confidence 34455544444444444 777778888889999999887 45778742 2567888888887744433
No 126
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=37.50 E-value=1.9e+02 Score=22.13 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHHHHHcCCeEEEecC
Q 040166 48 LKPRRSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+...+.+.++++.+++.|+..++-++
T Consensus 51 p~~el~~l~~L~~~a~~~~V~Fv~ais 77 (306)
T PF07555_consen 51 PEEELAELKELADAAKANGVDFVYAIS 77 (306)
T ss_dssp -HHHHHHHHHHHHHHHHTT-EEEEEEB
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 344566788999999999999988776
No 127
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=36.95 E-value=75 Score=21.25 Aligned_cols=44 Identities=9% Similarity=-0.035 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHc-CCeEEEe-cCCCCCCCCCHHHHH--HHHHHhhhhCcEEe
Q 040166 52 RSAHIAAMEMAKTS-GCILSYD-PNARLLPWPSAEAAR--GGIISIWDEADMIK 101 (156)
Q Consensus 52 ~~~~~~~~~~a~~~-g~~i~~D-~~~r~~~~~~~~~~~--~~l~~~l~~~dil~ 101 (156)
.+.+.++++.+++. +..++.+ .++.. ++.. ....++++++|+++
T Consensus 80 ~~~l~~ll~~~k~~~~~~~~~~~tG~~~------~~~~~~~~~~~~l~~~D~li 127 (154)
T TIGR02491 80 VEELIELVKKIKAEFPEKDIWLWTGYTW------EEILEDEKHLEVLKYIDVLV 127 (154)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCccH------HHHhcchhHHHHHhhCCEEE
Confidence 35677888888865 5543333 34321 1111 11236789999763
No 128
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=36.78 E-value=1.6e+02 Score=21.16 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCH-----HHHhHhhCCCCCCchHHHHHHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISE-----EELTLLIEGCDASDDNVVLEKL 126 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~-----~E~~~l~g~~~~~~~~~~~~~l 126 (156)
.+.+..+++.+++.|..+.++.|--...+ .+.++++++.+|.+.++- +....+.|.. .+.+.+..+.+
T Consensus 85 ~~~~~~l~~~~k~~g~~i~l~TNG~~~~~------~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~~-~~~~l~~i~~l 157 (246)
T PRK11145 85 AEFVRDWFRACKKEGIHTCLDTNGFVRRY------DPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVS-NHRTLEFARYL 157 (246)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcc------hHHHHHHHHhCCEEEECCCcCChhhcccccCCC-hHHHHHHHHHH
Confidence 34456788888999999999886321101 134566677888765544 3334455532 22222223455
Q ss_pred HhCCCc
Q 040166 127 FHSNLK 132 (156)
Q Consensus 127 ~~~g~~ 132 (156)
.+.|.+
T Consensus 158 ~~~g~~ 163 (246)
T PRK11145 158 AKRNQK 163 (246)
T ss_pred HhCCCc
Confidence 555544
No 129
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=36.69 E-value=1.9e+02 Score=22.09 Aligned_cols=71 Identities=13% Similarity=-0.019 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEec-----CHHHHhHhhCC---CCCCchHHHHHH
Q 040166 54 AHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKI-----SEEELTLLIEG---CDASDDNVVLEK 125 (156)
Q Consensus 54 ~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~-----n~~E~~~l~g~---~~~~~~~~~~~~ 125 (156)
.+.++++.+++.|+.+.++.|-- . . +.++++....|.+.+ +++....+.+. .+.+.+.+.++.
T Consensus 146 ~l~eli~~~k~~Gi~~~L~TNG~---~--~----e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~ 216 (322)
T PRK13762 146 YLPELIEEFHKRGFTTFLVTNGT---R--P----DVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL 216 (322)
T ss_pred hHHHHHHHHHHcCCCEEEECCCC---C--H----HHHHHHHhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 46788899999999999998731 1 1 234444445565543 34445556552 233334334455
Q ss_pred HHhCCCcE
Q 040166 126 LFHSNLKL 133 (156)
Q Consensus 126 l~~~g~~~ 133 (156)
+.+.+.+.
T Consensus 217 l~~~~~~~ 224 (322)
T PRK13762 217 LPSKKTRT 224 (322)
T ss_pred HHhCCCCE
Confidence 55555543
No 130
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.28 E-value=70 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCcEEEEeecCCceEEE
Q 040166 120 NVVLEKLFHSNLKLLLVTEGSNGCKYY 146 (156)
Q Consensus 120 ~~~~~~l~~~g~~~vvit~G~~G~~~~ 146 (156)
.++++...++|++.+.||....+-+..
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 344577777899999999987666543
No 131
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.26 E-value=63 Score=25.14 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhh--hCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEE
Q 040166 57 AAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWD--EADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLL 134 (156)
Q Consensus 57 ~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~v 134 (156)
.+.+..+-.|+..+||-..--++.. + .+.++|. ..|++=.|-+-+..++..+..+.. .+.+...|++.-
T Consensus 303 DA~EISkta~v~lvfDeekv~sliN--p----kVl~MLeel~ID~lGvSiDslmii~ped~a~~v---~k~~~~agvr~~ 373 (449)
T COG1973 303 DALEISKTAGVSLVFDEEKVRSLIN--P----KVLKMLEELNIDPLGVSIDSLMIIAPEDVADLV---KKALRGAGVRAE 373 (449)
T ss_pred cHHHhhhhcCeeEEEcHHHHHhhcC--H----HHHHHHHHcCCCccccccceEEEecchhhhHHH---HHHHHhcCccee
Confidence 3445667789999999742111111 2 2334443 577787787777666665544443 255656787765
Q ss_pred E---EeecCCceEEEecCeee
Q 040166 135 L---VTEGSNGCKYYTQEFKG 152 (156)
Q Consensus 135 v---it~G~~G~~~~~~~~~~ 152 (156)
+ |..|.+|+++..+++..
T Consensus 374 ~vG~Vee~~~~~~l~~~gee~ 394 (449)
T COG1973 374 EVGRVEEGGQGVILVDGGEER 394 (449)
T ss_pred EEeeeecCCcceEEEECCEee
Confidence 5 45778889988887654
No 132
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=34.89 E-value=1.1e+02 Score=23.75 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.2
Q ss_pred HHHHhCCCcEEEEeecC
Q 040166 124 EKLFHSNLKLLLVTEGS 140 (156)
Q Consensus 124 ~~l~~~g~~~vvit~G~ 140 (156)
+.|.+.|+..+.|-.|+
T Consensus 165 ~~Li~aGAD~ikVgiGp 181 (343)
T TIGR01305 165 EELILSGADIVKVGIGP 181 (343)
T ss_pred HHHHHcCCCEEEEcccC
Confidence 56777898888888776
No 133
>PTZ00293 thymidine kinase; Provisional
Probab=34.18 E-value=1.1e+02 Score=21.92 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCeEEE---ecCCCCCCCCCHHHHHHHHHHhhhhCcEE
Q 040166 55 HIAAMEMAKTSGCILSY---DPNARLLPWPSAEAARGGIISIWDEADMI 100 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~---D~~~r~~~~~~~~~~~~~l~~~l~~~dil 100 (156)
+.++++.+...|+.|++ |.+++..+|. ....|++.+|-+
T Consensus 92 i~~~~~~l~~~g~~VivaGLd~Df~~~~F~-------~~~~Ll~~AD~V 133 (211)
T PTZ00293 92 LVEFSEAAANLGKIVIVAALDGTFQRKPFG-------QILNLIPLAERV 133 (211)
T ss_pred HHHHHHHHHHCCCeEEEEecCcccccCcCc-------cHHHHHHhhCEE
Confidence 55677777788998875 7788777664 245677888866
No 134
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=33.87 E-value=1e+02 Score=20.18 Aligned_cols=51 Identities=16% Similarity=0.007 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHc-CCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEE--ecC
Q 040166 51 RRSAHIAAMEMAKTS-GCILSYDPNARLLPWPSAEAARGGIISIWDEADMI--KIS 103 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~-g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil--~~n 103 (156)
..+.+..+.+..++. |+.+.+|.-.....- .......+..-+..+|.+ +++
T Consensus 14 h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~--~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 14 HKEWVLALAEFLRQNCGIDVILDQWELNEIA--RQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred HHHHHHHHHHHHHhccCCceeecHHhhcccc--cCCHHHHHHHHHhcCCEEEEEec
Confidence 346677777888888 999999995432110 112334566668888876 445
No 135
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=33.52 E-value=1.1e+02 Score=24.94 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCC-----------CCCCHHHHHHHHHHhhhhCcEEecCH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLL-----------PWPSAEAARGGIISIWDEADMIKISE 104 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~-----------~~~~~~~~~~~l~~~l~~~dil~~n~ 104 (156)
.+-+..+.+.++++|+++++|..--.. .+. ....+.++++..++|.+.+|-
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~--~~i~ei~~e~~s~aD~~t~S~ 258 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQD--KSIKEIVHEMFSYADGCTMSG 258 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCC--CcHhHHhhhccCcCcEEEEeC
Confidence 445677788899999999999953211 221 123455778888999887774
No 136
>PRK04296 thymidine kinase; Provisional
Probab=33.08 E-value=1.6e+02 Score=20.36 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCeEEE---ecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 53 SAHIAAMEMAKTSGCILSY---DPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~---D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
+.+.++++.++..|+.|++ |..++...|. ...++++.+|.+.
T Consensus 93 ~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~-------~~~~L~~~aD~V~ 137 (190)
T PRK04296 93 EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFE-------GSPYLLALADKVT 137 (190)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCcccccCcCc-------hHHHHHHhcCeEE
Confidence 3355677777888887777 4455544443 2345667777664
No 137
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=32.65 E-value=72 Score=23.20 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 55 HIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
..++++..|+.|++.-+=+|...+ .+.+.++++.+|++.
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~--------~~~l~~~l~~vD~VL 135 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETP--------VESIKYYIHLLDKIT 135 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC--------HHHHHHHHHhcCEEE
Confidence 456778888889886665553211 245778888999774
No 138
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=32.39 E-value=36 Score=24.99 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=39.6
Q ss_pred HHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhh--hCcEEecCHHHHhH-----hhCCCCCCchHHHHHHHHhCCCc
Q 040166 60 EMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWD--EADMIKISEEELTL-----LIEGCDASDDNVVLEKLFHSNLK 132 (156)
Q Consensus 60 ~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~-----l~g~~~~~~~~~~~~~l~~~g~~ 132 (156)
+..+++++..++|.... +. ........+... .+.|+..-..+... +.--.+.+++ ++.+.+.+.+
T Consensus 60 ~~l~~~~i~~vIDATHP---fA--~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA---~~~l~~~~~~ 131 (249)
T PF02571_consen 60 EFLRENGIDAVIDATHP---FA--AEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEA---AELLKELGGG 131 (249)
T ss_pred HHHHhCCCcEEEECCCc---hH--HHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHH---HHHHhhcCCC
Confidence 33456788888888632 11 111122222221 23333333333321 1112344444 3556556667
Q ss_pred EEEEeecCCceEEE
Q 040166 133 LLLVTEGSNGCKYY 146 (156)
Q Consensus 133 ~vvit~G~~G~~~~ 146 (156)
.|.+|.|.+..--+
T Consensus 132 ~iflttGsk~L~~f 145 (249)
T PF02571_consen 132 RIFLTTGSKNLPPF 145 (249)
T ss_pred CEEEeCchhhHHHH
Confidence 89999999876433
No 139
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=32.03 E-value=1.8e+02 Score=20.25 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCeEEE-ecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH
Q 040166 57 AAMEMAKTSGCILSY-DPNARLLPWPSAEAARGGIISIWDEADMIKISEEE 106 (156)
Q Consensus 57 ~~~~~a~~~g~~i~~-D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E 106 (156)
.++..+++.|+++++ |....+.-...-..++...+.++...|.+.+-.++
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~ 159 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEA 159 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHH
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHH
Confidence 456677888887765 55332211111112344678888888876654443
No 140
>PRK08005 epimerase; Validated
Probab=31.98 E-value=75 Score=22.76 Aligned_cols=39 Identities=8% Similarity=-0.115 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 55 HIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
..++++..|+.|++.-+=+|...+ .+.++++++.+|++.
T Consensus 95 ~~~~l~~Ik~~G~k~GlAlnP~Tp--------~~~i~~~l~~vD~Vl 133 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALNPATP--------LLPYRYLALQLDALM 133 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCC--------HHHHHHHHHhcCEEE
Confidence 456778888889887665553211 244677888888774
No 141
>PLN00196 alpha-amylase; Provisional
Probab=31.89 E-value=60 Score=25.96 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+-++.+++.+++.|+.|++|..
T Consensus 91 ~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 91 EAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 45688999999999999999984
No 142
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=31.80 E-value=74 Score=22.98 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 55 HIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
..++++..|+.|++.-+=+|...+ .+.++++++.+|++.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~--------~~~i~~~l~~vD~Vl 137 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATP--------VDILDWVLPELDLVL 137 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCC--------HHHHHHHHhhcCEEE
Confidence 456778888889877665553211 245678888999774
No 143
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=31.13 E-value=1.7e+02 Score=19.91 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=29.6
Q ss_pred CchhhHHHHHHHHHHHHHcC-----CeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHh
Q 040166 47 LLKPRRSAHIAAMEMAKTSG-----CILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELT 108 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~g-----~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~ 108 (156)
+++.....+.++.+...+.+ +.|++||.. ++++..++..+..=+...-+.++.++..
T Consensus 67 vCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~-----DTp~~L~~Y~~~~~~~~~~ltg~~~~i~ 128 (174)
T PF02630_consen 67 VCPTTLANLSQLQKQLGEEGKDVQFVFISVDPER-----DTPEVLKKYAKKFGPDFIGLTGSREEIE 128 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTT-----C-HHHHHHHHHCHTTTCEEEEEEHHHHH
T ss_pred cCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCC-----CCHHHHHHHHHhcCCCcceeEeCHHHHH
Confidence 44555566667777666654 246778862 2344444444433334445555555443
No 144
>COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms]
Probab=31.03 E-value=46 Score=26.13 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISE 104 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~ 104 (156)
.+.+..+++..++.|....+|=-.+.. . ...++++++.|+++++-
T Consensus 97 t~~Llsa~k~lk~kGY~laldDF~~~~----~----~~~~~ll~l~diVkid~ 141 (407)
T COG3434 97 TEKLLSAIKELKQKGYLLALDDFIFSN----V----SEWKPLLPLSDIVKIDF 141 (407)
T ss_pred CHHHHHHHHHHHhcCceeeecceeecc----H----HHHHhhcchhheEEEEe
Confidence 344567778889999998887643321 1 13578899999998764
No 145
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=30.75 E-value=76 Score=24.61 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=15.5
Q ss_pred HHHHHhCCCcEEEEeecCCce
Q 040166 123 LEKLFHSNLKLLLVTEGSNGC 143 (156)
Q Consensus 123 ~~~l~~~g~~~vvit~G~~G~ 143 (156)
++.+...|.+.++|-+|..|-
T Consensus 206 A~~l~~LG~~ralvV~G~~Gl 226 (338)
T COG0547 206 AEALRLLGVERALVVHGLEGL 226 (338)
T ss_pred HHHHHHhCcceEEEEECCCCc
Confidence 355666788888888887664
No 146
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.53 E-value=73 Score=20.17 Aligned_cols=26 Identities=4% Similarity=-0.091 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCcEEEEeecCCceEE
Q 040166 120 NVVLEKLFHSNLKLLLVTEGSNGCKY 145 (156)
Q Consensus 120 ~~~~~~l~~~g~~~vvit~G~~G~~~ 145 (156)
.++++...++|.+.+.||...++.+.
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 64 VAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 34457777789999999988776654
No 147
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=30.07 E-value=39 Score=24.98 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=21.3
Q ss_pred CchhhHHHHHHHHHHHHH-cCC-eEEEecCCCCCCCCCHHHHHHHHHHhhhh-CcEEecCH
Q 040166 47 LLKPRRSAHIAAMEMAKT-SGC-ILSYDPNARLLPWPSAEAARGGIISIWDE-ADMIKISE 104 (156)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~-~g~-~i~~D~~~r~~~~~~~~~~~~~l~~~l~~-~dil~~n~ 104 (156)
+..+.+.++...+...++ .++ .|+.+......-+ .--.+..++++.. +|++....
T Consensus 7 vG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~---Git~~~~~~L~~~GvDviT~GN 64 (253)
T PF13277_consen 7 VGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGF---GITPKIAEELFKAGVDVITMGN 64 (253)
T ss_dssp BCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTS---S--HHHHHHHHHHT-SEEE--T
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCC---CCCHHHHHHHHhcCCCEEecCc
Confidence 445566666666665544 222 3344442211111 1112334455544 77765543
No 148
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=29.57 E-value=51 Score=25.84 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCeEEEecCCCC----CCCCCHHHHHHHHHHhhhh-CcEEecCHH
Q 040166 55 HIAAMEMAKTSGCILSYDPNARL----LPWPSAEAARGGIISIWDE-ADMIKISEE 105 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~----~~~~~~~~~~~~l~~~l~~-~dil~~n~~ 105 (156)
..++.+.+++++++++.|++... ..+.-+ ..+.+.+.+.. +|++.+|-+
T Consensus 159 ~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~--~Ep~v~~~~~~GaDlV~fSGd 212 (367)
T PF03841_consen 159 LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLP--DEPTVQEYLAAGADLVTFSGD 212 (367)
T ss_dssp --HHHHHHHHHT--EEEE-TTHHHHHHHTT------------CCCCT-SEEEEETT
T ss_pred HHHHHHHHhhcCCcEEEECCCCCCcCcccccCc--cccHHHHHhhcCCCEEEEECC
Confidence 56788889999999999998510 000000 01345666654 999988875
No 149
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.37 E-value=88 Score=24.95 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhh-CcEEecC
Q 040166 55 HIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDE-ADMIKIS 103 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~-~dil~~n 103 (156)
+..+.+.|++.|+.|++|--+.++ ...+.|++ +||+.=|
T Consensus 181 I~~l~~la~~~g~~vvVDnTf~~p----------~~~~pL~lGADIV~hS 220 (409)
T KOG0053|consen 181 IEKLARLAHKYGFLVVVDNTFGSP----------YNQDPLPLGADIVVHS 220 (409)
T ss_pred HHHHHHHHhhCCCEEEEeCCcCcc----------cccChhhcCCCEEEEe
Confidence 456677788999999999976433 13444666 7766543
No 150
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=29.22 E-value=95 Score=22.30 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=8.3
Q ss_pred HHHHhCCCc----EEEEeec
Q 040166 124 EKLFHSNLK----LLLVTEG 139 (156)
Q Consensus 124 ~~l~~~g~~----~vvit~G 139 (156)
+.|.+.|.. ..|++.|
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSG 77 (242)
T ss_pred HHHHHCCCCccccceEEccH
Confidence 344445543 2666665
No 151
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=28.95 E-value=71 Score=25.80 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+-++.+++.+++.|+.|++|..
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVV 102 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 45688999999999999999994
No 152
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.81 E-value=92 Score=22.38 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEec
Q 040166 54 AHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKI 102 (156)
Q Consensus 54 ~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~ 102 (156)
...++++..|+.|++..+=+|...+ .+.++++++.+|.+..
T Consensus 94 ~~~~~l~~ik~~g~k~GlalnP~Tp--------~~~i~~~l~~~D~vlv 134 (220)
T PRK08883 94 HVDRTLQLIKEHGCQAGVVLNPATP--------LHHLEYIMDKVDLILL 134 (220)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHhCCeEEE
Confidence 3567778888899887665553211 2457788889997754
No 153
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=28.71 E-value=1.3e+02 Score=24.32 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCC-CC---------CCCHHHHHHHHHHhhhhCcEEecCHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARL-LP---------WPSAEAARGGIISIWDEADMIKISEE 105 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~-~~---------~~~~~~~~~~l~~~l~~~dil~~n~~ 105 (156)
.+-+..+.+.++++|+++++|..--. +- +.+ ...++.+++++.++|.+++|-.
T Consensus 190 ~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~-~~i~ei~~e~~~~aD~~~~S~~ 252 (450)
T TIGR02618 190 MANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYED-KSIAEILKEMMSYADGCTMSGK 252 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccC-CCHHHHHHHHhccCcEEEEeec
Confidence 35567778889999999999995321 10 111 1234667888999998876653
No 154
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=28.51 E-value=2.2e+02 Score=20.25 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCeEEEec---CCCCCCCCCHHHHHHHHHHhhhh-CcEEec-----CHHHHhHhhCCCCCCchHHHH
Q 040166 53 SAHIAAMEMAKTSGCILSYDP---NARLLPWPSAEAARGGIISIWDE-ADMIKI-----SEEELTLLIEGCDASDDNVVL 123 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~D~---~~r~~~~~~~~~~~~~l~~~l~~-~dil~~-----n~~E~~~l~g~~~~~~~~~~~ 123 (156)
+...++++.+++.+++++.-- ...| +.+.....+.++-.. +|+++. +..+...++. +.
T Consensus 100 ~~~~~~~~~~~~~~~kiI~S~H~f~~tp----~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~---------~~ 166 (225)
T cd00502 100 ALLEELINSRKKGNTKIIGSYHDFSGTP----SDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLK---------FT 166 (225)
T ss_pred hHHHHHHHHHHhCCCEEEEEeccCCCCc----CHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHH---------HH
Confidence 445666676667777776633 3222 234555666666554 788876 3344433331 11
Q ss_pred HHHHh-CCCcEEEEeecCCceE
Q 040166 124 EKLFH-SNLKLLLVTEGSNGCK 144 (156)
Q Consensus 124 ~~l~~-~g~~~vvit~G~~G~~ 144 (156)
+.+.. .+.+.+++-+|..|..
T Consensus 167 ~~~~~~~~~p~i~~~MG~~G~~ 188 (225)
T cd00502 167 RQVKNLYDIPLIAINMGELGKL 188 (225)
T ss_pred HHHHhcCCCCEEEEEcCCCCch
Confidence 22221 1457899999999965
No 155
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.40 E-value=2.4e+02 Score=21.24 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCC---eEEEecCCCCCCCCCHHHHHHHHH
Q 040166 54 AHIAAMEMAKTSGC---ILSYDPNARLLPWPSAEAARGGII 91 (156)
Q Consensus 54 ~~~~~~~~a~~~g~---~i~~D~~~r~~~~~~~~~~~~~l~ 91 (156)
.+.+.++.+.+.|+ .|++||+.. +..+.+...+.++
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiG--F~k~~~~n~~ll~ 202 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFG--FGKNLSHNYQLLA 202 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCC--cCCCHHHHHHHHH
Confidence 34556677888998 899999853 4444444444433
No 156
>PRK10785 maltodextrin glucosidase; Provisional
Probab=28.33 E-value=72 Score=26.68 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+.+..++++|++.|+.|++|...
T Consensus 225 ~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 225 DAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Confidence 467899999999999999999964
No 157
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=28.26 E-value=1.3e+02 Score=23.82 Aligned_cols=47 Identities=15% Similarity=0.020 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecC
Q 040166 50 PRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKIS 103 (156)
Q Consensus 50 ~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n 103 (156)
...+.+..+++.+++.|+.+.+|+-.. ++ + .+.+++++..+|++..-
T Consensus 260 a~~~ti~~ai~~akk~GikvgVD~lnp---~t-p---~e~i~~l~~~vD~Vllh 306 (391)
T PRK13307 260 APISTIEKAIHEAQKTGIYSILDMLNV---ED-P---VKLLESLKVKPDVVELH 306 (391)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEEcCC---CC-H---HHHHHHhhCCCCEEEEc
Confidence 344567888899999999999986321 11 1 23456667788877444
No 158
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=27.65 E-value=89 Score=23.98 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH----HcCCeEEEecCCCCCCCC-CHHHHHHHHHHhhhhCcEEecC
Q 040166 53 SAHIAAMEMAK----TSGCILSYDPNARLLPWP-SAEAARGGIISIWDEADMIKIS 103 (156)
Q Consensus 53 ~~~~~~~~~a~----~~g~~i~~D~~~r~~~~~-~~~~~~~~l~~~l~~~dil~~n 103 (156)
+++..+++.++ ..|+.++.|.--.+ .|. +.......+..+-+++|++.+=
T Consensus 170 ~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~-~~~~~~~~iGQ~~~~~a~~vD~IsPM 224 (316)
T PF13200_consen 170 DAITDFLAYAREELHPYGVPVSADVFGYV-AWSPDDMGIGQDFEKIAEYVDYISPM 224 (316)
T ss_pred HHHHHHHHHHHHHHhHcCCCEEEEecccc-cccCCCCCcCCCHHHHhhhCCEEEec
Confidence 45555655554 46999999984222 232 2233445678888999999763
No 159
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=27.31 E-value=88 Score=18.11 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=12.4
Q ss_pred HHHHHhCCCcEEEEeecC-Cce
Q 040166 123 LEKLFHSNLKLLLVTEGS-NGC 143 (156)
Q Consensus 123 ~~~l~~~g~~~vvit~G~-~G~ 143 (156)
+.++++.....++|+-|+ +|+
T Consensus 24 Ld~~~~~~~~~~lvhGga~~Ga 45 (71)
T PF10686_consen 24 LDKVHARHPDMVLVHGGAPKGA 45 (71)
T ss_pred HHHHHHhCCCEEEEECCCCCCH
Confidence 344444445566777776 676
No 160
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.22 E-value=84 Score=19.70 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=18.7
Q ss_pred hHHHHHHHHhCCCcEEEEeecCCceE
Q 040166 119 DNVVLEKLFHSNLKLLLVTEGSNGCK 144 (156)
Q Consensus 119 ~~~~~~~l~~~g~~~vvit~G~~G~~ 144 (156)
..++++...++|++.+.||...+..+
T Consensus 62 ~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 62 TLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCChH
Confidence 33445777778999999998766543
No 161
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=27.09 E-value=85 Score=22.87 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred hhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHH-hCCCcEEEEeecCCceEEEe
Q 040166 94 WDEADMIKISEEELTLLIEGCDASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 94 l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~ 147 (156)
+++.|.+.+.-+=-.. .+-.+.-+++..++.++ +.|....+-|.|++|..++-
T Consensus 96 ~e~PD~lvfDLDP~~~-~~f~~v~~~A~~vr~~L~~lgL~sf~KTSG~kGlHv~v 149 (228)
T cd04865 96 LDHPDELVIDLDPQPG-TSFEDVVEVALLVREVLDELGLRGYPKTSGARGLHIYV 149 (228)
T ss_pred CCCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEE
Confidence 4667777765431100 00001112333445555 48999999999999998874
No 162
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=27.04 E-value=3.9e+02 Score=22.62 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=58.0
Q ss_pred cCCc-CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCC---CCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCc
Q 040166 43 KASI-LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPW---PSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASD 118 (156)
Q Consensus 43 ~~~~-~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~---~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~ 118 (156)
-.++ ++..+.+-..++.+.+-+.|..+-+++..++..| +++.. +.+.-.+.-|+..+++++--.-.-.++++
T Consensus 26 Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~k~~~~~~~rsdp~D----vARve~rTfI~s~~~~dagp~nnw~~p~e 101 (601)
T PRK04210 26 PDRVVWCDGSEEEYDRLRDQAVEAGTEIKLNPEKRPNSFLARSDPSD----VARVEDRTFICSEKEEDAGPTNNWMDPAE 101 (601)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHcCCEeeccCCCCCceeeccCChhh----hhhcccceEEecCchhhcCCccCcCCHHH
Confidence 3444 4444455567888888999999999988778777 44433 22222344455555555533333345555
Q ss_pred hHHHHHHHHh---CCCcE--EEEeecCCceEEEecC
Q 040166 119 DNVVLEKLFH---SNLKL--LLVTEGSNGCKYYTQE 149 (156)
Q Consensus 119 ~~~~~~~l~~---~g~~~--vvit~G~~G~~~~~~~ 149 (156)
..+.+..+.. +|-.. +-..+|+-|+-+..-|
T Consensus 102 ~~~~l~~lf~G~M~GRTMyVipfsmGP~gSp~s~~g 137 (601)
T PRK04210 102 MRETLKGLFKGCMRGRTMYVVPFSMGPLGSPFAKIG 137 (601)
T ss_pred HHHHHHHhcCCccCCCeEEEeeeeeCCCCCCcccce
Confidence 5433333332 23222 3345999998765443
No 163
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=27.01 E-value=2.5e+02 Score=20.47 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEec-CCCCCCCCCHHHHHHHHHHhhh-hCcEEecCHHHHhHhhCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDP-NARLLPWPSAEAARGGIISIWD-EADMIKISEEELTLLIEG 113 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~-~~r~~~~~~~~~~~~~l~~~l~-~~dil~~n~~E~~~l~g~ 113 (156)
.+.....++..++.|+.+++|= +.. - ..+..+.. .+|+++.+......+...
T Consensus 135 ~~~~~~~l~~L~~~G~~ialDDFGtG-------~---ssl~~L~~l~~d~iKID~~fi~~i~~~ 188 (256)
T COG2200 135 LDTALALLRQLRELGVRIALDDFGTG-------Y---SSLSYLKRLPPDILKIDRSFVRDLETD 188 (256)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCC-------H---HHHHHHhhCCCCeEEECHHHHhhcccC
Confidence 3356778899999999999964 421 1 22333333 689999999988777654
No 164
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=26.93 E-value=80 Score=25.99 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+.+.++++.|++.|+.|++|...
T Consensus 75 ~~df~~Lv~~ah~~Gi~vilD~V~ 98 (539)
T TIGR02456 75 IDDFKDFVDEAHARGMRVIIDLVL 98 (539)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecc
Confidence 467889999999999999999853
No 165
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.92 E-value=2.2e+02 Score=19.70 Aligned_cols=20 Identities=5% Similarity=-0.185 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHcCCeEEE
Q 040166 52 RSAHIAAMEMAKTSGCILSY 71 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~ 71 (156)
.+.+..+++.+.+.+..++|
T Consensus 34 ~dl~~~l~~~~~~~~~~vfl 53 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFL 53 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 44555566666555555555
No 166
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=26.84 E-value=1.4e+02 Score=23.76 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEecC----------CCCC---CCCCHHHHHHHHHHhhhhCcEEecCH
Q 040166 49 KPRRSAHIAAMEMAKTSGCILSYDPN----------ARLL---PWPSAEAARGGIISIWDEADMIKISE 104 (156)
Q Consensus 49 ~~~~~~~~~~~~~a~~~g~~i~~D~~----------~r~~---~~~~~~~~~~~l~~~l~~~dil~~n~ 104 (156)
+.+.+.+....+.+++.++++++|.. .|.+ .|+ ..+..++.+.|+|-+.+|.
T Consensus 202 pVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~s----I~~IarEm~sYaD~~~mS~ 266 (471)
T COG3033 202 PVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWS----IEEIAREMYSYADGCTMSA 266 (471)
T ss_pred cchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCccccccc----HHHHHHHHHhhhhhheeec
Confidence 44566777888889999999999974 1111 132 3456788889999877765
No 167
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=26.68 E-value=53 Score=23.89 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=21.4
Q ss_pred EecCHHHHhHhhCCCCCCchHHHHHHHHhCC
Q 040166 100 IKISEEELTLLIEGCDASDDNVVLEKLFHSN 130 (156)
Q Consensus 100 l~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g 130 (156)
.++|++++...||.+|+++++ ..++..|
T Consensus 56 ~~Ase~dL~k~FgTtd~~eI~---~eIl~kG 83 (234)
T COG1500 56 EKASEEDLKKAFGTTDPDEIA---EEILKKG 83 (234)
T ss_pred ccCCHHHHHHHhCCCCHHHHH---HHHHhcC
Confidence 468899999999999887764 5565555
No 168
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=26.64 E-value=88 Score=22.78 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=31.3
Q ss_pred hhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHH-hCCCcEEEEeecCCceEEEe
Q 040166 94 WDEADMIKISEEELTLLIEGCDASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 94 l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~ 147 (156)
+++.|.+.+.-+=-.. .+-.+.-+++..++.++ +.|....+-|.|++|..++-
T Consensus 95 ~e~PD~lvfDLDP~~~-~~f~~v~~~A~~~r~~L~~lgL~~~~KTSG~kGlHV~v 148 (227)
T cd04862 95 LERPDRIVFDLDPGPG-VPWKAVVEAALLVRELLDELGLESFVKTSGGKGLHVVV 148 (227)
T ss_pred CCCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEE
Confidence 5677877766542100 00001112333445555 48999999999999998875
No 169
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.53 E-value=1.3e+02 Score=22.10 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=21.6
Q ss_pred HHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecC
Q 040166 63 KTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKIS 103 (156)
Q Consensus 63 ~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n 103 (156)
+..|.+.++|++.. ...+...++..-+|+|++++.
T Consensus 10 R~~GlT~v~Dkglg------~~~~~dlLe~ag~yID~~K~g 44 (244)
T PF02679_consen 10 RSRGLTMVIDKGLG------LRYLEDLLESAGDYIDFLKFG 44 (244)
T ss_dssp -SSS-EEEEESS--------HHHHHHHHHHHGGG-SEEEE-
T ss_pred CCCCcEEEecCCCC------HHHHHHHHHHhhhhccEEEec
Confidence 35688999999842 344555666666899999887
No 170
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=26.46 E-value=88 Score=23.06 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=31.0
Q ss_pred hhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHH-hCCCcEEEEeecCCceEEEe
Q 040166 94 WDEADMIKISEEELTLLIEGCDASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 94 l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~ 147 (156)
+++.|.+.+.-+=-.. .+-.+.-+++..++.++ +.|.+..+-|.|++|..++-
T Consensus 111 ~~~PD~lvfDLDP~~~-~~f~~v~~~A~~~r~~L~~lgL~~f~KTSG~kGlHV~v 164 (245)
T TIGR02778 111 PEKPDRIVFDLDPGPG-VAWKLVVEAAQLIRELLDELGLESFVKTSGGKGLHVYV 164 (245)
T ss_pred CCCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEE
Confidence 4667777665431100 00001112333445555 48999999999999998875
No 171
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=26.31 E-value=2e+02 Score=19.68 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=35.9
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhC-C-CcEEEEeecCCceEEE
Q 040166 69 LSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHS-N-LKLLLVTEGSNGCKYY 146 (156)
Q Consensus 69 i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~-g-~~~vvit~G~~G~~~~ 146 (156)
+++|++.. .+...+..+.+.+.+++.+..+-. ++.+ .+.|..+ + ...-++.+|+.|++..
T Consensus 3 v~iD~~v~--------d~~~L~~~l~~~~~v~~ld~~~d~-------~~qI---~~~L~~~~~i~~lhivsHG~~G~l~L 64 (165)
T PF14252_consen 3 VFIDSRVE--------DYESLLAGLPPGVEVVILDPSRDG-------LEQI---AQALAGYQNIDALHIVSHGSPGALQL 64 (165)
T ss_pred EEEeCCCC--------CHHHHHhcCcCCCEEEEEeCCCch-------HHHH---HHHHhcCCCCceEEEEcCCCcceEEE
Confidence 67788742 233455666677777777654221 1122 2344433 2 3467889999999876
Q ss_pred ec
Q 040166 147 TQ 148 (156)
Q Consensus 147 ~~ 148 (156)
-+
T Consensus 65 G~ 66 (165)
T PF14252_consen 65 GN 66 (165)
T ss_pred CC
Confidence 43
No 172
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=25.89 E-value=46 Score=23.60 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 53 SAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
+...++++..++.|++.-+=++... -.+.++++++.+|++.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T--------~~~~~~~~l~~vD~Vl 132 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPET--------PVEELEPYLDQVDMVL 132 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS---------GGGGTTTGCCSSEEE
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCC--------CchHHHHHhhhcCEEE
Confidence 3345677888889988766554321 1234678889999864
No 173
>PLN02361 alpha-amylase
Probab=25.60 E-value=91 Score=24.76 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+-+..+++.+++.|+.|++|..
T Consensus 75 ~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 75 EHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEc
Confidence 45688999999999999999984
No 174
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=25.57 E-value=87 Score=25.85 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+.+..+++.|+++|+.|++|...
T Consensus 74 ~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 74 MADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc
Confidence 466889999999999999999864
No 175
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=25.40 E-value=4.3e+02 Score=22.53 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEec-CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDP-NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEG 113 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~-~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~ 113 (156)
.+.....++..++.|+.+++|= +.. . .....+..+ .+|+++.+..-...+...
T Consensus 677 ~~~~~~~l~~l~~~G~~i~ld~fg~~------~-~~~~~l~~l--~~d~iKid~~~~~~~~~~ 730 (799)
T PRK11359 677 DTEIFKRIQILRDMGVGLSVDDFGTG------F-SGLSRLVSL--PVTEIKIDKSFVDRCLTE 730 (799)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCc------h-hhHHHHhhC--CCCEEEECHHHHhhcccC
Confidence 4556778888999999999984 321 1 111223332 499999998876666543
No 176
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=25.07 E-value=3e+02 Score=20.73 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=14.7
Q ss_pred cEEecCHHHHhHhhCC
Q 040166 98 DMIKISEEELTLLIEG 113 (156)
Q Consensus 98 dil~~n~~E~~~l~g~ 113 (156)
-|+.+...|++.|++.
T Consensus 154 ~VlTPH~gEf~rL~g~ 169 (284)
T COG0063 154 VVLTPHPGEFARLLGT 169 (284)
T ss_pred EEECCCHHHHHHhcCC
Confidence 7889999999999985
No 177
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=24.86 E-value=91 Score=23.92 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCeE-EEec-CCCCCCCCCHHHHHHHHHHhhhhCcEEecC
Q 040166 56 IAAMEMAKTSGCIL-SYDP-NARLLPWPSAEAARGGIISIWDEADMIKIS 103 (156)
Q Consensus 56 ~~~~~~a~~~g~~i-~~D~-~~r~~~~~~~~~~~~~l~~~l~~~dil~~n 103 (156)
.++.+.++..|..| .+|+ ..++..-.........+.++|+.+|++.+-
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh 204 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLH 204 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEc
Confidence 35566778888866 5588 333210000011124589999999999653
No 178
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=24.84 E-value=1e+02 Score=22.52 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=32.4
Q ss_pred hhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHH-hCCCcEEEEeecCCceEEEe
Q 040166 94 WDEADMIKISEEELTLLIEGCDASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 94 l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~ 147 (156)
+++.|.+.+.-+=-. . +-.+.-+++..++.++ +.|....+-|.|++|..++-
T Consensus 97 ~e~PD~~vfDLDP~~-~-~f~~v~~~A~~~r~~L~~~gL~~f~KTSG~kGlHv~v 149 (228)
T cd04864 97 LEHPDLMVFDLDPSA-D-DIEAVRTAALAVRELLDELGLPSFVKTTGSRGFHVVV 149 (228)
T ss_pred CCCCCEEEEecCCCC-C-CHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEE
Confidence 567788877655310 0 0011222333445555 48999999999999998875
No 179
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=24.82 E-value=1e+02 Score=25.48 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+.++++++.+++.|+.|++|..+
T Consensus 159 ~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 159 PDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcc
Confidence 456889999999999999999854
No 180
>PRK09776 putative diguanylate cyclase; Provisional
Probab=24.66 E-value=5e+02 Score=23.12 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEec-CCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDP-NARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEG 113 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~-~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~ 113 (156)
.+.....++..++.|+.+++|= +... .....+.++ .+|+++.+..-...+...
T Consensus 973 ~~~~~~~~~~l~~~G~~~~lddfg~g~-------~~~~~l~~~--~~d~iKid~~~~~~~~~~ 1026 (1092)
T PRK09776 973 AESASRLVQKLRLAGCRVVLSDFGRGL-------SSFNYLKAF--MADYLKLDGELVANLHGN 1026 (1092)
T ss_pred HHHHHHHHHHHHHCCcEEEEcCCCCCc-------hHHHHHHhC--CCCEEEECHHHHHhHhcC
Confidence 3456677888999999999973 3211 111223222 599999998877766654
No 181
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=24.50 E-value=1e+02 Score=23.80 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCC
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
..+....+++.+|+.|..+.+|.-+
T Consensus 56 ~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 56 DLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp SHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CHHHHHHHHHHHHHCCCeEEEeecc
Confidence 3667788889999999999998875
No 182
>PRK12313 glycogen branching enzyme; Provisional
Probab=24.16 E-value=1.1e+02 Score=25.87 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEecC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+-++++++.+++.|+.|++|..
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 45689999999999999999964
No 183
>COG3285 Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
Probab=24.09 E-value=1.1e+02 Score=23.31 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHHHH-hCCCcEEEEeecCCceEEEec
Q 040166 123 LEKLF-HSNLKLLLVTEGSNGCKYYTQ 148 (156)
Q Consensus 123 ~~~l~-~~g~~~vvit~G~~G~~~~~~ 148 (156)
++.++ +.|....+-|.|++|..++..
T Consensus 150 lr~~Ld~lGL~~f~KTSGGKG~Hv~~P 176 (299)
T COG3285 150 LRDLLDELGLVSFPKTSGGKGLHVYVP 176 (299)
T ss_pred HHHHHHHcCCccceeccCCCeeEEEEe
Confidence 44444 489999999999999988763
No 184
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=23.91 E-value=1.1e+02 Score=22.34 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=30.9
Q ss_pred hhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHH-hCCCcEEEEeecCCceEEEe
Q 040166 94 WDEADMIKISEEELTLLIEGCDASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 94 l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~ 147 (156)
+++.|.+.+.-+=-... +-.++-+++..++.++ +.|....+-|.|++|..++-
T Consensus 95 ~e~PD~lvfDLDP~~~~-~f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~v 148 (227)
T cd04861 95 LERPDRLVFDLDPGPGV-PFEDVVEAALLLRELLDELGLESFPKTSGGKGLHVYV 148 (227)
T ss_pred CCCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEE
Confidence 46777777654311000 0001112333445555 48999999999999998874
No 185
>PF04843 Herpes_teg_N: Herpesvirus tegument protein, N-terminal conserved region; InterPro: IPR006928 Herpesvirus UL36 encodes the largest herpes simplex virus protein, also designated VP1/2, which is a component of the virion tegument. The N-terminal domain, of approximately 500aa, encodes a ubiquitin-specific protease (USP) that belongs to MEROPS peptidase family C76 (UL36 deubiquitinylating peptidase, clan CA). It is conserved across the herpesviridae and accumulates as a cleavage product of UL36 during late viral replication []. The conservation of UL36-USP across all members of the herpesviridae and the absolute conservation of the active site residues imply that UL36-USP plays an important role the herpesvirus life cycle.
Probab=23.84 E-value=2e+02 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=17.1
Q ss_pred CCCcEEEEeecCCceEEEecCee
Q 040166 129 SNLKLLLVTEGSNGCKYYTQEFK 151 (156)
Q Consensus 129 ~g~~~vvit~G~~G~~~~~~~~~ 151 (156)
..+..+++|.|+.|..++..++.
T Consensus 120 ~~~~y~l~t~g~~~~av~~~~~~ 142 (172)
T PF04843_consen 120 RTPQYILVTIGALTIAVIRTGDR 142 (172)
T ss_pred CCCcEEEEEECCceEEEEEeCCc
Confidence 45678999999999877755443
No 186
>PLN02645 phosphoglycolate phosphatase
Probab=23.73 E-value=1.6e+02 Score=22.14 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=4.4
Q ss_pred eEEEecC
Q 040166 68 ILSYDPN 74 (156)
Q Consensus 68 ~i~~D~~ 74 (156)
.++||+.
T Consensus 30 ~~~~D~D 36 (311)
T PLN02645 30 TFIFDCD 36 (311)
T ss_pred EEEEeCc
Confidence 4667764
No 187
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=23.67 E-value=1.1e+02 Score=22.26 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=30.5
Q ss_pred hhCcEEecCHHHHhHhhCCCCCCchHHHHHHHH-hCCCcEEEEeecCCceEEEe
Q 040166 95 DEADMIKISEEELTLLIEGCDASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 95 ~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~ 147 (156)
++.|.+.+.-+=... .+-.+.-+++..++.++ +.|....+-|.|++|..++-
T Consensus 91 e~PD~lvfDLDP~~~-~~f~~v~~~A~~vr~~L~~lgL~~f~KTSG~kGlHV~v 143 (223)
T cd04866 91 NKPSEIVFDLDPPSR-DHFSLAVEAANLLKEILDALGLTSFVKTSGNKGLQVYI 143 (223)
T ss_pred CCCCeEEEECCCCCC-CCHHHHHHHHHHHHHHHHHcCCccceEccCCCeEEEEE
Confidence 577777765442100 00001112333445555 48999999999999998874
No 188
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=23.55 E-value=2.5e+02 Score=19.14 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhh--hCcEEec----CHHHHhHhhCCC-CCC-chHHHHHHH
Q 040166 55 HIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWD--EADMIKI----SEEELTLLIEGC-DAS-DDNVVLEKL 126 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~--~~dil~~----n~~E~~~l~g~~-~~~-~~~~~~~~l 126 (156)
+..+++.+++.|..+.+..|-. .. +.+.++++ .+|++.+ ..+....+.|.. +.+ ...+.++.+
T Consensus 79 l~~li~~~~~~g~~v~i~TNg~-----~~----~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l 149 (191)
T TIGR02495 79 LPDFLRKVRELGFEVKLDTNGS-----NP----RVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEIL 149 (191)
T ss_pred HHHHHHHHHHCCCeEEEEeCCC-----CH----HHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHH
Confidence 5677888888898888888732 12 22344443 3566644 344456677643 222 344445666
Q ss_pred HhCCCcEEEE
Q 040166 127 FHSNLKLLLV 136 (156)
Q Consensus 127 ~~~g~~~vvi 136 (156)
.+.|.+..|.
T Consensus 150 ~~~gi~~~i~ 159 (191)
T TIGR02495 150 LRSGIPFELR 159 (191)
T ss_pred HHcCCCEEEE
Confidence 6677664433
No 189
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=23.46 E-value=1.4e+02 Score=21.74 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCC--eEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEe
Q 040166 55 HIAAMEMAKTSGC--ILSYDPNARLLPWPSAEAARGGIISIWDEADMIK 101 (156)
Q Consensus 55 ~~~~~~~a~~~g~--~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~ 101 (156)
..+.++..++.|+ +.-+=+|...+ .+.++++++.+|++.
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp--------~~~i~~~l~~vD~VL 145 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETP--------ISLLEPYLDQIDLIQ 145 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCC--------HHHHHHHHhhcCEEE
Confidence 4567777888887 65544442211 245778888898773
No 190
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.94 E-value=3.4e+02 Score=20.50 Aligned_cols=85 Identities=7% Similarity=0.044 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHH---Hh--HhhCC-----------
Q 040166 50 PRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEE---LT--LLIEG----------- 113 (156)
Q Consensus 50 ~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E---~~--~l~g~----------- 113 (156)
...+.+..+-+.+.+.|..|+-..- ++ ..++....|+|++-....- +. .-.|.
T Consensus 93 lge~gL~~l~~a~~~~Gl~vvtEvm-------~~----~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~ 161 (286)
T COG2876 93 LGEEGLKLLKRAADETGLPVVTEVM-------DV----RDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGL 161 (286)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEec-------CH----HHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCc
Confidence 3445555555556678888776552 12 1256667889988554322 22 22232
Q ss_pred -CCCCchHHHHHHHHhCCCcEEEEeecCCceEEEe
Q 040166 114 -CDASDDNVVLEKLFHSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 114 -~~~~~~~~~~~~l~~~g~~~vvit~G~~G~~~~~ 147 (156)
.++++-..+++++++.|.+.|| ++++|+.-++
T Consensus 162 ~aTieEwL~AAEYI~s~GN~~vI--LCERGIRtfe 194 (286)
T COG2876 162 SATIEEWLNAAEYILSHGNGNVI--LCERGIRTFE 194 (286)
T ss_pred cccHHHHHHHHHHHHhCCCCcEE--EEeccccccc
Confidence 1344444445777777765554 3455555444
No 191
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.75 E-value=4e+02 Score=21.26 Aligned_cols=71 Identities=6% Similarity=-0.110 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEe-cCCCCCCCCCHHHHHHHHHHhhhh-CcEEecC-----HHHHhHhhCCCCCCchHHHHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYD-PNARLLPWPSAEAARGGIISIWDE-ADMIKIS-----EEELTLLIEGCDASDDNVVLE 124 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D-~~~r~~~~~~~~~~~~~l~~~l~~-~dil~~n-----~~E~~~l~g~~~~~~~~~~~~ 124 (156)
...+.++++.+++.|+.+.+. .|- ..+++ . +.+++++++ +|.+.++ .+-...++|....+.+.+.++
T Consensus 88 ~~~l~eLl~~lk~~gi~taI~~TnG-~~l~~-~----e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~ 161 (404)
T TIGR03278 88 YPELEELTKGLSDLGLPIHLGYTSG-KGFDD-P----EIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLR 161 (404)
T ss_pred CHHHHHHHHHHHhCCCCEEEeCCCC-cccCC-H----HHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHH
Confidence 455678889999999988886 441 11222 2 345666676 7877555 444555677554333333344
Q ss_pred HHHh
Q 040166 125 KLFH 128 (156)
Q Consensus 125 ~l~~ 128 (156)
.+.+
T Consensus 162 ~L~e 165 (404)
T TIGR03278 162 RFCE 165 (404)
T ss_pred HHHh
Confidence 4544
No 192
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=22.75 E-value=1.1e+02 Score=25.67 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCeEEEecCC
Q 040166 53 SAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
+-++.+++.+++.|+.|++|..+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~ 251 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVY 251 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEc
Confidence 56899999999999999999854
No 193
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=22.60 E-value=1.2e+02 Score=22.24 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=32.4
Q ss_pred hhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHH-hCCCcEEEEeecCCceEEEe
Q 040166 94 WDEADMIKISEEELTLLIEGCDASDDNVVLEKLF-HSNLKLLLVTEGSNGCKYYT 147 (156)
Q Consensus 94 l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~-~~g~~~vvit~G~~G~~~~~ 147 (156)
+++.|.+++.-+=... .+-.++-+++..++.++ +.|....+-|.|++|..++-
T Consensus 99 ~e~PD~~vfDLDP~~~-~~f~~v~~~A~~~r~~L~~lgL~s~~KTSG~kGlHV~v 152 (231)
T cd04863 99 PGPPDRLVFDLDPGEP-AGLVECARVALWLRDRLAALGLASFPKTSGSKGLHLYV 152 (231)
T ss_pred CCCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHcCCccceECCCCCeEEEEE
Confidence 5778888876542100 00011122333445555 48999999999999998874
No 194
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.35 E-value=2.1e+02 Score=20.65 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=37.0
Q ss_pred hhcCCc--CchhhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhh--CcEEec
Q 040166 41 IEKASI--LLKPRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDE--ADMIKI 102 (156)
Q Consensus 41 l~~~~~--~~~~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~--~dil~~ 102 (156)
+..+++ ...-..+....+.+.+++.|++.++=+...+.. ..+..+++.++. ++++++
T Consensus 49 i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~-----g~~~~lk~~~e~~gi~~~~P 109 (217)
T PF02593_consen 49 IPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKP-----GLRRQLKKQLEEFGIEVEFP 109 (217)
T ss_pred CCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCcc-----chHHHHHHHHHhcCceeecC
Confidence 456666 234455777788899998999888878765542 244556666665 344433
No 195
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.30 E-value=1.2e+02 Score=19.04 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCcEEEEeecCCceE
Q 040166 120 NVVLEKLFHSNLKLLLVTEGSNGCK 144 (156)
Q Consensus 120 ~~~~~~l~~~g~~~vvit~G~~G~~ 144 (156)
.++++.+.++|++.++||.-.+..+
T Consensus 77 ~~~~~~a~~~g~~iv~iT~~~~~~l 101 (139)
T cd05013 77 VEAAEIAKERGAKVIAITDSANSPL 101 (139)
T ss_pred HHHHHHHHHcCCeEEEEcCCCCChh
Confidence 3345667778999999998765544
No 196
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=22.29 E-value=1.2e+02 Score=20.66 Aligned_cols=31 Identities=10% Similarity=-0.045 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCC
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWP 81 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~ 81 (156)
..+.+..+++.|.+.|.+|.+-+.+-+..|+
T Consensus 63 ~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~ 93 (166)
T PF14488_consen 63 PVDLLEMILDAADKYGMKVFVGLYFDPDYWD 93 (166)
T ss_pred cccHHHHHHHHHHHcCCEEEEeCCCCchhhh
Confidence 3466788899999999999999987777676
No 197
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=22.25 E-value=1.1e+02 Score=18.98 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=16.4
Q ss_pred HHHHhCCCcEEEEeecCC-ce
Q 040166 124 EKLFHSNLKLLLVTEGSN-GC 143 (156)
Q Consensus 124 ~~l~~~g~~~vvit~G~~-G~ 143 (156)
..+.+.|++.|+|.+|.. ++
T Consensus 7 ~~l~~~gv~lv~I~~g~~~~~ 27 (115)
T PF13911_consen 7 PELEAAGVKLVVIGCGSPEGI 27 (115)
T ss_pred HHHHHcCCeEEEEEcCCHHHH
Confidence 456678999999999988 54
No 198
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.19 E-value=1.7e+02 Score=19.81 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=23.2
Q ss_pred hHHHHHHHHhCCCcEEEEeecCCceEEEecCeeeEe
Q 040166 119 DNVVLEKLFHSNLKLLLVTEGSNGCKYYTQEFKGHV 154 (156)
Q Consensus 119 ~~~~~~~l~~~g~~~vvit~G~~G~~~~~~~~~~~~ 154 (156)
...+++...++|++.+.||....+-+..-.+....+
T Consensus 117 ~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~ 152 (177)
T cd05006 117 VLKALEAAKERGMKTIALTGRDGGKLLELADIEIHV 152 (177)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 334457777799999999988766654333333333
No 199
>PRK11059 regulatory protein CsrD; Provisional
Probab=21.97 E-value=4.8e+02 Score=21.90 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhHhhCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTLLIEG 113 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~ 113 (156)
.+.....++..++.|+.+++|= +.... .+ ...+.. + .+|+++.+..-...+...
T Consensus 532 ~~~~~~~l~~L~~~G~~iaidd-fG~g~-~s----~~~L~~-l-~~d~iKid~s~v~~i~~~ 585 (640)
T PRK11059 532 ISRLRPVLRMLRGLGCRLAVDQ-AGLTV-VS----TSYIKE-L-NVELIKLHPSLVRNIHKR 585 (640)
T ss_pred HHHHHHHHHHHHHCCCEEEEEC-CCCCc-cc----HHHHHh-C-CCCEEEECHHHHhhhhcC
Confidence 4567788899999999999973 22111 11 122333 3 499999998877766543
No 200
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.90 E-value=1.9e+02 Score=19.26 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=17.9
Q ss_pred HHHHHHhCCCcEEEEeecCCceEE
Q 040166 122 VLEKLFHSNLKLLLVTEGSNGCKY 145 (156)
Q Consensus 122 ~~~~l~~~g~~~vvit~G~~G~~~ 145 (156)
+++...++|++.+.||...+.-+.
T Consensus 98 ~~~~a~~~g~~ii~iT~~~~s~l~ 121 (154)
T TIGR00441 98 AIEAAKDKGMKTITLAGKDGGKMA 121 (154)
T ss_pred HHHHHHHCCCEEEEEeCCCCCchh
Confidence 456677789999999987665543
No 201
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.79 E-value=2.7e+02 Score=19.32 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCeEEEec-CCCCCCCCCHHHHHHHHHHhhh-hCcEEecC
Q 040166 54 AHIAAMEMAKTSGCILSYDP-NARLLPWPSAEAARGGIISIWD-EADMIKIS 103 (156)
Q Consensus 54 ~~~~~~~~a~~~g~~i~~D~-~~r~~~~~~~~~~~~~l~~~l~-~~dil~~n 103 (156)
...++++.+++.|+++..++ +. +...+ .++.+.+ .+|++..+
T Consensus 90 ~~~~~i~~~~~~g~~~~~~~~~~----~t~~~----~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 90 TIKGAVKAAKKHGKEVQVDLINV----KDKVK----RAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC----CChHH----HHHHHHHcCCCEEEEc
Confidence 45678888999999999884 52 11112 2344444 78999764
No 202
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.77 E-value=1.4e+02 Score=18.97 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEecC
Q 040166 49 KPRRSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 49 ~~~~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
+++.+.+..+++++.+.|+.++|-.-
T Consensus 7 SMP~~~L~~l~~~a~~~~~~~V~RG~ 32 (113)
T PF09673_consen 7 SMPDASLRNLLKQAERAGVVVVFRGF 32 (113)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEECC
Confidence 45677889999999999999999664
No 203
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.63 E-value=3.7e+02 Score=20.51 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEE------ecCHHHHhHhhCCCCCCchHHHHHH
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMI------KISEEELTLLIEGCDASDDNVVLEK 125 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil------~~n~~E~~~l~g~~~~~~~~~~~~~ 125 (156)
.+.+.+..+.|-+..-.|-+..+-||.+.+ ++....+.++-+..++. ..|++-+..+=..-+.....++.++
T Consensus 99 vevLre~ye~aL~~~~VVGLsIgTRPDClp--d~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r 176 (312)
T COG1242 99 VEVLREMYEQALSEAGVVGLSIGTRPDCLP--DDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKR 176 (312)
T ss_pred HHHHHHHHHHHhCcCCeeEEeecCCCCCCc--HHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHH
Confidence 455556666666556668899999998774 45667777777776665 3455555444333344333444567
Q ss_pred HHhCCCcE
Q 040166 126 LFHSNLKL 133 (156)
Q Consensus 126 l~~~g~~~ 133 (156)
+.++|++.
T Consensus 177 ~rkrgIkv 184 (312)
T COG1242 177 LRKRGIKV 184 (312)
T ss_pred HHHcCCeE
Confidence 77777653
No 204
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=21.54 E-value=2.6e+02 Score=19.25 Aligned_cols=12 Identities=33% Similarity=0.121 Sum_probs=6.4
Q ss_pred ecCHHHHhHhhC
Q 040166 101 KISEEELTLLIE 112 (156)
Q Consensus 101 ~~n~~E~~~l~g 112 (156)
+.|..|...++.
T Consensus 92 ~~sapelm~lTr 103 (164)
T PF11965_consen 92 FESAPELMRLTR 103 (164)
T ss_pred EcCHHHHHHHhc
Confidence 445556655553
No 205
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.46 E-value=1.2e+02 Score=24.15 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCeEEEecCCCC
Q 040166 55 HIAAMEMAKTSGCILSYDPNARL 77 (156)
Q Consensus 55 ~~~~~~~a~~~g~~i~~D~~~r~ 77 (156)
+..+.+.|++.|+.+++|--+..
T Consensus 168 I~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 168 IPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred HHHHHHHHHhcCCEEEEECCccc
Confidence 45677888999999999987543
No 206
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=21.29 E-value=2.1e+02 Score=17.58 Aligned_cols=42 Identities=10% Similarity=0.013 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcC---CeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEec
Q 040166 54 AHIAAMEMAKTSG---CILSYDPNARLLPWPSAEAARGGIISIWDEADMIKI 102 (156)
Q Consensus 54 ~~~~~~~~a~~~g---~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~ 102 (156)
.+...++.+++.+ ..|++-. . + ++...+.+.+..|.+|++++
T Consensus 54 k~~~~i~~l~~~~~~~~~ivv~G-C----~--aq~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 54 KSRNRIRKLKKLKKPGAKIVVTG-C----M--AQRYGEELKKEFPEVDLVVG 98 (98)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEe-C----c--cccChHHHHhhCCCeEEEeC
Confidence 3444444455544 6666633 2 1 12334567888899999874
No 207
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.02 E-value=4.9e+02 Score=21.67 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEE-ecCCCCCCCCCHHHHHHHHHHhhh--hCcEEecCHHHHhHhhCCCCCCchH
Q 040166 51 RRSAHIAAMEMAKTSGCILSY-DPNARLLPWPSAEAARGGIISIWD--EADMIKISEEELTLLIEGCDASDDN 120 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~-D~~~r~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g~~~~~~~~ 120 (156)
..-....+++.|++.|--|++ |..-|- .+.+.....+.+++. ..|.++.=-+ .|.|.++.+.+.
T Consensus 451 ~a~vak~AI~~a~~~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~~~pd~i~~vge---alvg~dsv~q~~ 517 (587)
T KOG0781|consen 451 AAGVAKEAIQEARNQGFDVVLIDTAGRM---HNNAPLMTSLAKLIKVNKPDLILFVGE---ALVGNDSVDQLK 517 (587)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeccccc---cCChhHHHHHHHHHhcCCCceEEEehh---hhhCcHHHHHHH
Confidence 344567888999999876554 775442 233444444555543 5666654333 456665555543
No 208
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=21.00 E-value=2.9e+02 Score=19.24 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhh---hhCcEEecCHHHHhHh
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIW---DEADMIKISEEELTLL 110 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l---~~~dil~~n~~E~~~l 110 (156)
..+++.++++..++.|+. .++....+++++ ...++.++.++|+..+
T Consensus 56 tKtaI~~aLr~mkKsGi~--------------k~EL~~~~~eil~gK~kS~La~ctD~Eal~i 104 (176)
T PF06576_consen 56 TKTAINEALRRMKKSGIS--------------KPELEAFLREILNGKQKSWLAFCTDDEALFI 104 (176)
T ss_pred cHHHHHHHHHHHHHhcCC--------------cHHHHHHHHHHhCcccccccceecchHHHHH
Confidence 356677888888888863 234455566766 3688999998887654
No 209
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=20.96 E-value=79 Score=19.81 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=17.0
Q ss_pred HHHHHHhCCCcEEEEeecCCceE
Q 040166 122 VLEKLFHSNLKLLLVTEGSNGCK 144 (156)
Q Consensus 122 ~~~~l~~~g~~~vvit~G~~G~~ 144 (156)
.++.+.++|++.|.||......+
T Consensus 72 ~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 72 LLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp HHHHHHHTTSEEEEEESSTTSHH
T ss_pred hhHHHHhcCCeEEEEeCCCCCch
Confidence 45666778999999997766544
No 210
>PRK02113 putative hydrolase; Provisional
Probab=20.85 E-value=1.2e+02 Score=21.86 Aligned_cols=46 Identities=7% Similarity=-0.026 Sum_probs=27.0
Q ss_pred HHHhhhhCcEEecCHHHHhHhhCCCCCCchHHHHHHHHhCCCcEEEEee
Q 040166 90 IISIWDEADMIKISEEELTLLIEGCDASDDNVVLEKLFHSNLKLLLVTE 138 (156)
Q Consensus 90 l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~l~~~g~~~vvit~ 138 (156)
+.+++..+|+++.+........+..+++++. +...+.+++.+++|.
T Consensus 177 ~~~~~~~~DlLi~e~~~~~~~~~H~t~~~a~---~~~~~~~~k~l~l~H 222 (252)
T PRK02113 177 EYEQLQGIDVLVMNALRIAPHPTHQSLEEAL---ENIKRIGAKETYLIH 222 (252)
T ss_pred HHHHhcCCCEEEEhhhcCCCCCCcCCHHHHH---HHHHHhCCCEEEEEc
Confidence 4456788999999653211111223455543 444456788888885
No 211
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=20.81 E-value=1.4e+02 Score=25.18 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEecC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+-++++++.+++.|+.|++|..
T Consensus 205 ~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 205 PDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 45688999999999999999974
No 212
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.79 E-value=3.5e+02 Score=19.84 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHh
Q 040166 50 PRRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELT 108 (156)
Q Consensus 50 ~~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~ 108 (156)
.+.+-..++.+.+++.|+.....|-. . .....+.++ .++.++..-.|+.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd-------~-~s~d~l~~~--~~~~~KIaS~dl~ 101 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFD-------E-ESVDFLEEL--GVPAYKIASGDLT 101 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-S-------H-HHHHHHHHH--T-SEEEE-GGGTT
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCC-------H-HHHHHHHHc--CCCEEEecccccc
Confidence 34566778889999999987777741 2 222333332 4777877665543
No 213
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.70 E-value=4.2e+02 Score=20.75 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCHHHHHHHHHHhhhhCcEEecCHHHHhH-----hhCC-----------C
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSAEAARGGIISIWDEADMIKISEEELTL-----LIEG-----------C 114 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~-----l~g~-----------~ 114 (156)
..+.+..+.+..++.|..++-++-. .. .++.+.+++|++...-.+... -.+. .
T Consensus 150 g~~gl~~L~~~~~e~Gl~~~tev~d-------~~----~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~ 218 (352)
T PRK13396 150 GESALELLAAAREATGLGIITEVMD-------AA----DLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMA 218 (352)
T ss_pred hHHHHHHHHHHHHHcCCcEEEeeCC-------HH----HHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCC
Confidence 4444555555566789888887742 21 234445668998765443222 2221 1
Q ss_pred -CCCchHHHHHHHHhCCCcEEEEe-ecC
Q 040166 115 -DASDDNVVLEKLFHSNLKLLLVT-EGS 140 (156)
Q Consensus 115 -~~~~~~~~~~~l~~~g~~~vvit-~G~ 140 (156)
++++...+++++.+.|.+.+++. +|-
T Consensus 219 ~t~ee~~~A~e~i~~~Gn~~viL~erG~ 246 (352)
T PRK13396 219 ATIDEWLMAAEYILAAGNPNVILCERGI 246 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 44554445577776666544443 444
No 214
>PRK05402 glycogen branching enzyme; Provisional
Probab=20.69 E-value=1.4e+02 Score=25.78 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEecC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.+-++++++.+++.|+.|++|..
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 45688999999999999999964
No 215
>PF01172 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) protein ; InterPro: IPR019783 This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; PDB: 1NYN_A 2WBM_B 1P9Q_C 1T95_A 2KDO_A 2L9N_A.
Probab=20.44 E-value=58 Score=19.87 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=19.1
Q ss_pred cCHHHHhHhhCCCCCCchHHHHHHHHhCC
Q 040166 102 ISEEELTLLIEGCDASDDNVVLEKLFHSN 130 (156)
Q Consensus 102 ~n~~E~~~l~g~~~~~~~~~~~~~l~~~g 130 (156)
++..++...+|..+.+++ ++.++..|
T Consensus 54 As~~~L~~~FGT~d~~~i---i~~IL~~G 79 (91)
T PF01172_consen 54 ASKEDLENAFGTTDVDEI---IKKILKKG 79 (91)
T ss_dssp E-HHHHHHHHSSS-HHHH---HHHHHHHS
T ss_pred CCHHHHHHHhCCCCHHHH---HHHHHhcC
Confidence 888999999998777765 47777766
No 216
>PF02428 Prot_inhib_II: Potato type II proteinase inhibitor family; InterPro: IPR003465 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Members of the Pin2 family are proteinase inhibitors that belong to MEROPS inhibitor family I20, clan IA and are restricted to plants. They inhibit serine peptidases belonging to MEROPS peptidase family S1 [] (IPR001254 from INTERPRO). They have a multidomain structure [], which permits circular permutation of the sequences. It was been shown that some naturally occurring Pin2 proteins, have an `ancestral' circularly permuted structure []. Circular permutation/ rearrangements of sequences has also been observed between species, such as favin from Vicia faba and the lectin concanavalin A from Canavalia ensiformis [] or amongst members of the plant aspartyl proteinases and human lung surfactant proteins []. The Pin2 family of proteinase inhibitors are present in seeds, leaves and other organs. Perhaps the best known representatives are the wound-induced proteinase inhibitors [, ], which contain up to eight sequence-repeats (the `IP repeats'). The sequence of the IP repeats is quite variable, only the cysteines constituting the four disulphide bridges and a single proline residue are conserved throughout all the known repeat sequences. The structure of the proteinase inhibitor complex is known [].; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1PJU_C 1OYV_I 1QH2_B 1FYB_A 1CE3_A 2JZM_A 1YTP_A 2JYY_A 1TIH_A 4SGB_I ....
Probab=20.31 E-value=95 Score=16.96 Aligned_cols=16 Identities=31% Similarity=0.656 Sum_probs=11.9
Q ss_pred ecCCceEEEecCeeeE
Q 040166 138 EGSNGCKYYTQEFKGH 153 (156)
Q Consensus 138 ~G~~G~~~~~~~~~~~ 153 (156)
.|.+|+.++..++.+.
T Consensus 34 ~g~KGC~yy~~dGtfi 49 (52)
T PF02428_consen 34 AGYKGCNYYSADGTFI 49 (52)
T ss_dssp TSBTTSEEEETTTEEE
T ss_pred ccccccEEECCCCcEE
Confidence 5788998888776554
No 217
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.17 E-value=1.7e+02 Score=18.47 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=25.5
Q ss_pred cccCChhhhhcCCc-CchhhHHHHHHHHHHHHHcCCeEEEecC
Q 040166 33 EAELDVNLIEKASI-LLKPRRSAHIAAMEMAKTSGCILSYDPN 74 (156)
Q Consensus 33 ~~~i~~~~l~~~~~-~~~~~~~~~~~~~~~a~~~g~~i~~D~~ 74 (156)
.++.+.+.+.+.++ +.-.+.....++...+.+.|+ .++|.+
T Consensus 56 ~~~~~~~~~~~~Dvvf~a~~~~~~~~~~~~~~~~g~-~ViD~s 97 (121)
T PF01118_consen 56 VEDADPEELSDVDVVFLALPHGASKELAPKLLKAGI-KVIDLS 97 (121)
T ss_dssp EEETSGHHHTTESEEEE-SCHHHHHHHHHHHHHTTS-EEEESS
T ss_pred EeecchhHhhcCCEEEecCchhHHHHHHHHHhhCCc-EEEeCC
Confidence 33344456677777 333334455667777778888 788886
No 218
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=20.12 E-value=1.4e+02 Score=25.64 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+.++++++.+++.|+.|++|..+
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDvV~ 267 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDVVY 267 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc
Confidence 456889999999999999999864
No 219
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.09 E-value=3.6e+02 Score=19.74 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCeEEE---ecCCCCCCCCCHHHHHHHHHHhhh-hCcEEec-----CHHHHhHhhCCCCCCchHHHH
Q 040166 53 SAHIAAMEMAKTSGCILSY---DPNARLLPWPSAEAARGGIISIWD-EADMIKI-----SEEELTLLIEGCDASDDNVVL 123 (156)
Q Consensus 53 ~~~~~~~~~a~~~g~~i~~---D~~~r~~~~~~~~~~~~~l~~~l~-~~dil~~-----n~~E~~~l~g~~~~~~~~~~~ 123 (156)
+...++++.+++.|++++. |...-|+. +.....++++.. .+|+++. +..+...++. +.
T Consensus 122 ~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~----~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~---------~~ 188 (253)
T PRK02412 122 DVVKEMVAFAHEHGVKVVLSYHDFEKTPPK----EEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLN---------AT 188 (253)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCCCcCH----HHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHH---------HH
Confidence 4456677777777777766 33333322 234444555443 3677765 3334333331 11
Q ss_pred HHHHh--CCCcEEEEeecCCceE
Q 040166 124 EKLFH--SNLKLLLVTEGSNGCK 144 (156)
Q Consensus 124 ~~l~~--~g~~~vvit~G~~G~~ 144 (156)
+.+.+ .+.+.+.+-+|+.|..
T Consensus 189 ~~~~~~~~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 189 REMKELYADQPLITMSMGKLGRI 211 (253)
T ss_pred HHHHhcCCCCCEEEEeCCCCchH
Confidence 22222 3567899999999964
No 220
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=20.05 E-value=1.4e+02 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCC
Q 040166 52 RSAHIAAMEMAKTSGCILSYDPNA 75 (156)
Q Consensus 52 ~~~~~~~~~~a~~~g~~i~~D~~~ 75 (156)
.+-+..+++.++++|+.|++|...
T Consensus 80 ~~d~~~lv~~~h~~gi~vilD~V~ 103 (551)
T PRK10933 80 LDDFDELVAQAKSRGIRIILDMVF 103 (551)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Confidence 456889999999999999999953
No 221
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.00 E-value=1.8e+02 Score=22.46 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCH
Q 040166 51 RRSAHIAAMEMAKTSGCILSYDPNARLLPWPSA 83 (156)
Q Consensus 51 ~~~~~~~~~~~a~~~g~~i~~D~~~r~~~~~~~ 83 (156)
......++.+.|+..|.+|.+|.-+. .+|.++
T Consensus 102 D~~k~ieiakRAk~~GmKVl~dFHYS-DfwaDP 133 (403)
T COG3867 102 DLKKAIEIAKRAKNLGMKVLLDFHYS-DFWADP 133 (403)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeccch-hhccCh
Confidence 35556778888999999999999874 357654
Done!