BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040167
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 268 bits (686), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/234 (62%), Positives = 170/234 (72%), Gaps = 12/234 (5%)
Query: 1 MGSVCCCFHVEDFEDYMNPNSSVYRNCMCLSCFIQHVLNVYTSLFRRGDVHSVPSSIQGA 60
MG V CF VED ++YMNPNSSVYRNC C+ C + LN+Y S+FRRG+ S+PSS+Q
Sbjct: 1 MGCVSSCFRVEDIDEYMNPNSSVYRNCPCIRCLAHNFLNLYISVFRRGETRSLPSSVQAT 60
Query: 61 ASMTSTASLDNSLSDMYRSPPRPLPYDADPRYFRLQHEGLVSRREKGSSQFHEESEPLRS 120
AS+TS++S DN LS+ +RS PRPLPYDADPRYFR LVSRREKGSS HEE EPLRS
Sbjct: 61 ASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRS 116
Query: 121 DNDVESESFSAGD-KW--NDSSCEDGSKEQRSKSSVTLSSAKS-----TAGFAYIYSPSE 172
D+D +SESF G KW N S+ D ++ S +L +S A +Y SE
Sbjct: 117 DSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSE 176
Query: 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDET 226
DEDVCPTCLEEYT ENPKIVTKCSHHFHL CIYEWMERSENCPVCGKVM F+ET
Sbjct: 177 DEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223
+D C CLE +T ++P VT C H +HL CI EW +RS+ CP+C ++ V
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLFVL 92
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 153 VTLSSAKSTAGFAYIYSPSED--EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER 210
T S T+ A++ +D +D C CLE + +P +T C H +HL CI EW +R
Sbjct: 7 TTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQR 66
Query: 211 SENCPVCGKVMVFDETT 227
S CP+C + + + T
Sbjct: 67 SSQCPMCWQSISLKDPT 83
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
+ D+C C Y N ++T CSH FH GC+ +W+ E CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
+ D+C C Y N ++T CSH FH GC+ +W+ E CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 138 SSCEDGSKEQRSKSSVTLSSAKSTAGFAYIYSPSEDEDVCPTCLEEYTP-ENPKIVTKCS 196
S+ DG E KS +T+ KS GF D C CL E+ E+ +++ KC+
Sbjct: 111 STNGDGLNESMIKS-ITVYKYKSGDGFV-------DGSDCSVCLSEFEENESLRLLPKCN 162
Query: 197 HHFHLGCIYEWMERSENCPVC 217
H FHL CI W++ NCP+C
Sbjct: 163 HAFHLPCIDTWLKSHSNCPLC 183
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 177 CPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDETT 227
CP C E+YT E C+H FH CI W+E + CPVC K + +++T
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDST 279
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 121 DNDVESESFSAGDKWNDSSCEDGSKEQRSKSSVTLSSAKSTAGFAYIYSPSEDEDVCPTC 180
D ES + G + D +Q ++ L K+ G + S C C
Sbjct: 72 DGITESSTALQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSD------CAVC 125
Query: 181 LEEYTPENP-KIVTKCSHHFHLGCIYEWMERSENCPVC 217
L E+T E+ +++ KCSH FH+ CI W+ + CP+C
Sbjct: 126 LREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLC 163
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
+EDE C CLE+ T C H FH GCI W+ + CPVC
Sbjct: 205 TEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVC 251
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 155 LSSAKSTAGFAYIYSPSEDEDVCPTCLEE--YTPENPKIVTK--------CSHHFHLGCI 204
L T + + + D+++C C++E ++P K C H HL C+
Sbjct: 327 LDDTLVTVTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCL 386
Query: 205 YEWMERSENCPVCGKVMVFDE 225
WMERS+ CP+C ++ VFDE
Sbjct: 387 KNWMERSQTCPIC-RLPVFDE 406
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 177 CPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVC--GKVMV 222
CP CL E+ E+ +++ KC+H FH+ CI W+ NCP+C G M+
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMI 225
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 177 CPTCLEEY-TPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
C CL ++ + E +++ KC H FH+GCI +W+E+ CP+C
Sbjct: 123 CSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 177 CPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDETT 227
CP C E+YT E C+H FH CI W+E + CPVC K + +++T
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDST 278
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 122 NDVESESFSAGDKWNDSSCEDGSKEQRSK-SSVTLSSAKSTAGFAYIYSPSEDEDV-CPT 179
ND+ SE+ S G++ G + S+ S + + +S F + + + C
Sbjct: 67 NDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSV 126
Query: 180 CLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
CL ++ E +++ KC H FH+GCI +W+E+ CP+C
Sbjct: 127 CLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 165
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 170 PSEDEDVCPTCLEEY-TPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
P + +CP CL EY + E + + +C H FH+ CI EW++ +CPVC
Sbjct: 246 PGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVC 294
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 151 SSVTLSSAKSTAGFAYIYSPSEDEDVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWME 209
+S+T+ K G D C CL E+ E+ +++ KCSH FHL CI W+
Sbjct: 116 NSITVVGFKKGEGII-------DGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLL 168
Query: 210 RSENCPVC-GKVMVFDE 225
+NCP+C V++ E
Sbjct: 169 SHKNCPLCRAPVLLITE 185
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 177 CPTCLEEYTPENP-KIVTKCSHHFHLGCIYEWMERSENCPVC 217
C CL E+ E +I+ CSH FH+ CI W++ + NCP+C
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLC 179
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 170 PSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCG 218
P+ D + C C E + +N +++ KC H FH GC +W++ CP CG
Sbjct: 1924 PAPDGNSCEICHEIFKSKNMRVL-KCGHKFHKGCFKQWLKGQSTCPTCG 1971
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
+ D+C C ++ ++T CSH FH C+ +W+ E CP+C
Sbjct: 532 QHNDICSICFQDM---KSAVITPCSHFFHAACLKKWLYVQETCPLC 574
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 174 EDVCPTCLEE-YTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225
+DVC C +E Y+ + +T+C H FH C+ +W+ + CP+C ++M++ +
Sbjct: 618 DDVCAICYQEMYSAK----ITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTD 666
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222
C C+ EYT N CSH +H+ CI W+ + CP+C + ++
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 615
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222
C C+ EYT N CSH +H+ CI W+ + CP+C + ++
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 591
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223
C C+ EYT N CSH +H+ CI W+ + CP+C + ++
Sbjct: 567 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLV 614
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
D+C C Y ++T CSH FH GC+ +W+ E CP+C
Sbjct: 535 DICAIC---YQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLC 574
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 123 DVESESFSAGDKWNDSSCEDGSKEQ-RSKSSVTLSSAKSTAGFAYIYSPSEDEDVCPTCL 181
D++S SF D W+ +K +S V +S ++ G CP CL
Sbjct: 36 DIDSGSFDLSD-WDQRLPPPAAKAVVQSLPVVIISPEQADKGVK-----------CPVCL 83
Query: 182 EEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
E+ + C H FH GCI W+ ++ +CP+C
Sbjct: 84 LEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLC 119
>sp|Q7TPV2|DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=2 SV=2
Length = 1204
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 116 EPLRSDNDVESESFSAGDKWNDSSCEDGSKEQRSKSSVTLSSAKSTAGFAYIYSPSEDED 175
EP +S ESE SA D N S S+ + + + + G + + E+E+
Sbjct: 1087 EPKKS----ESEEKSAQDGNNASPSHTASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEE 1142
Query: 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
C C E +PEN ++ C+H FH CI W+ + CP C
Sbjct: 1143 PCVICHENLSPENLSVL-PCAHKFHSQCIRPWLMQQGTCPTC 1183
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
D D C C+E Y P + + C H FH CI W+ CP+C
Sbjct: 299 DSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMC 343
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC-GKVMVFDET 226
E +DVC C E+T +T C+H+FH C+ +W+ + CP+C KV + DE
Sbjct: 542 EIDDVCAICYHEFTTSAR--ITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDEI 595
>sp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2
SV=1
Length = 219
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 118 LRSDNDVESESFSAGDKWNDSSCEDGSKEQRSKSSVTLSSAKSTAGFAYIYSPSEDEDVC 177
LR N V SE+ GD + G K + KS T+S + + P D + C
Sbjct: 81 LRCSNLVPSEA--GGDNYPVRLTNTGVKRKALKSFQTVSYSTE------LNLPGLDTE-C 131
Query: 178 PTCLEEYTPE-NPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222
CL E+ E K++ C H FH+ CI +W+ +CP C ++
Sbjct: 132 AICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLI 177
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 172 EDEDVCPTCLEEYTP--ENPKI-----VTKCSHHFHLGCIYEWMERSENCPVC 217
+ + +C C+++ P E K+ + C H H GC+ WMERS+ CP+C
Sbjct: 315 DTDSMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMERSQTCPIC 367
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223
C C+ EYT N CSH +H+ CI W+ + CP+C + ++
Sbjct: 702 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLV 749
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 152 SVTLSSAKSTAGFAYIYSPSEDEDVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMER 210
S+T+ + GF E D C CL E+ E+ +++ KC+H FH+ CI W++
Sbjct: 141 SITVYKYRKMDGFV------ESSD-CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKS 193
Query: 211 SENCPVCGKVMV 222
NCP+C +V
Sbjct: 194 HSNCPLCRAFIV 205
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 170 PSEDEDVCPTCLEEY-TPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
SE+ D C CL+++ E + + C H FHL CI W+ R +CP+C
Sbjct: 189 ASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMC 237
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 173 DEDVCPTCLEEY-TPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
++ VCP CL EY T E + + +C H FH CI W++ +CPVC
Sbjct: 323 NDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVC 368
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223
C C+ EYT N CSH +H+ CI W+ + CP+C + ++
Sbjct: 584 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLV 631
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 177 CPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222
CP CL E+ E +++ +C H FH GCI W+ CP+C +V
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLV 164
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 177 CPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVC-GKVMV 222
C CL E+ E+ +++ KC+H FH+ CI W++ NCP+C K++V
Sbjct: 155 CSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 168 YSPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSEN-CPVCGKVMV 222
+ ++ DVC CLEEY + + CSH +H C+ W+ +++ CPVC + +V
Sbjct: 231 FKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 177 CPTCLEEYT-PENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223
C CL E++ E+ +++ +CSH FH CI W++ NCP+C + F
Sbjct: 157 CSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITF 204
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 168 YSPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSEN-CPVCGKVMV 222
+ ++ DVC CLEEY + + CSH +H C+ W+ +++ CPVC + +V
Sbjct: 231 FKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 177 CPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVM 221
CP C E+YT C+H FH CI W+E+ + CPVC K +
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 177 CPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVM 221
CP C E+YT C+H FH CI W+E+ + CPVC K +
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 177 CPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDET 226
CP C ++Y C+H FH GCI W+E+ ++CPVC K + T
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNT 278
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 167 IYSPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225
+ S ++ + CP CL E+ E I C H FH CI W+ ++ +CP+C + D+
Sbjct: 78 VISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDD 136
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 177 CPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDETT 227
CP C ++Y C+H FH GCI W+E+ ++CPVC K + T
Sbjct: 232 CPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTA 282
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 129 FSAGDKWNDSSCEDGSKEQRSKSSVTLSSAKSTAGFAYIYSPSE-------DEDVCPTCL 181
F + +W + ++ K++R K+ AK G + + + D D C C+
Sbjct: 211 FYSARRWRLTRAQN-KKQKRLKAE-----AKKAIGKLQLRTIKQGDKVLGPDGDSCAVCI 264
Query: 182 EEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
E Y P + + C+H FH CI W+ CP+C
Sbjct: 265 EPYKPSDVVRILTCNHFFHKNCIDPWLLEHRTCPMC 300
>sp|Q5REG4|DTX3_PONAB Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii GN=DTX3
PE=2 SV=1
Length = 347
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGK 219
E E CP CL E +N K + KC H F GCI ++ + CP+CG+
Sbjct: 159 EQESTCPICLGEI--QNAKTLEKCRHSFCEGCITRALQVKKACPMCGR 204
>sp|Q8N9I9|DTX3_HUMAN Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens GN=DTX3
PE=1 SV=2
Length = 347
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGK 219
E E CP CL E +N K + KC H F GCI ++ + CP+CG+
Sbjct: 159 EQESTCPICLGEI--QNAKTLEKCRHSFCEGCITRALQVKKACPMCGR 204
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 118 LRSDNDVESESFSAGDKWNDSSCEDGSKEQRSKSSVTLSSAKSTAGFAYIYSPSEDEDVC 177
+RS + + S+ S DSS G K++ K ++ + I P E+ C
Sbjct: 78 IRSRSFMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPE------INLPGVGEE-C 130
Query: 178 PTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222
CL ++ E +++ KC+H FHL CI +W+ + CP C +V
Sbjct: 131 VICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCLV 176
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217
D+C C Y ++T CSH FH GC+ +W+ + CP+C
Sbjct: 535 DICAIC---YQDMKSAVITPCSHFFHAGCLKKWLYVQDTCPLC 574
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,192,253
Number of Sequences: 539616
Number of extensions: 3503527
Number of successful extensions: 16058
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 14764
Number of HSP's gapped (non-prelim): 1337
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)