Query 040167
Match_columns 227
No_of_seqs 242 out of 1563
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.7 6.6E-17 2.3E-21 105.4 4.6 51 172-222 3-54 (55)
2 1x4j_A Ring finger protein 38; 99.7 4.8E-17 1.6E-21 113.0 4.1 54 171-224 20-73 (75)
3 2l0b_A E3 ubiquitin-protein li 99.6 6.4E-17 2.2E-21 116.8 4.2 53 171-223 37-89 (91)
4 2kiz_A E3 ubiquitin-protein li 99.6 3.3E-16 1.1E-20 106.9 5.7 54 171-224 11-64 (69)
5 2ep4_A Ring finger protein 24; 99.6 4.6E-16 1.6E-20 107.6 5.1 53 171-223 12-64 (74)
6 2ecl_A Ring-box protein 2; RNF 99.6 3.5E-16 1.2E-20 110.5 4.6 53 173-225 14-78 (81)
7 2ect_A Ring finger protein 126 99.6 5.2E-16 1.8E-20 108.4 4.9 55 171-225 12-66 (78)
8 2ecm_A Ring finger and CHY zin 99.6 1E-15 3.5E-20 99.6 4.3 50 173-222 4-54 (55)
9 3dpl_R Ring-box protein 1; ubi 99.6 2.1E-15 7.1E-20 111.9 4.4 53 173-225 36-103 (106)
10 2ea6_A Ring finger protein 4; 99.5 4.4E-15 1.5E-19 100.8 4.8 53 171-223 12-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.5 2.2E-15 7.6E-20 103.0 3.3 55 171-225 7-65 (71)
12 1v87_A Deltex protein 2; ring- 99.5 1.1E-14 3.8E-19 108.8 5.6 52 173-224 24-95 (114)
13 2xeu_A Ring finger protein 4; 99.5 4.4E-15 1.5E-19 99.3 2.9 53 173-225 2-58 (64)
14 2djb_A Polycomb group ring fin 99.5 2E-14 6.9E-19 98.9 6.0 53 171-225 12-64 (72)
15 2d8s_A Cellular modulator of i 99.5 8.2E-15 2.8E-19 103.3 3.8 55 170-225 11-72 (80)
16 2d8t_A Dactylidin, ring finger 99.5 5.7E-15 1.9E-19 101.4 2.3 50 172-224 13-62 (71)
17 2ecy_A TNF receptor-associated 99.5 4.3E-14 1.5E-18 95.5 5.7 51 172-225 13-64 (66)
18 4a0k_B E3 ubiquitin-protein li 99.5 4.6E-15 1.6E-19 111.8 0.5 53 173-225 47-114 (117)
19 2ecn_A Ring finger protein 141 99.5 1.3E-14 4.5E-19 99.1 2.7 50 172-225 13-62 (70)
20 1chc_A Equine herpes virus-1 r 99.5 2.5E-14 8.7E-19 97.0 4.1 49 172-222 3-51 (68)
21 2ysl_A Tripartite motif-contai 99.5 5E-14 1.7E-18 96.8 5.5 52 171-225 17-71 (73)
22 2ct2_A Tripartite motif protei 99.5 5.2E-14 1.8E-18 100.0 5.4 54 171-224 12-69 (88)
23 2yur_A Retinoblastoma-binding 99.5 6.2E-14 2.1E-18 97.0 5.5 52 171-225 12-66 (74)
24 2csy_A Zinc finger protein 183 99.4 1E-13 3.5E-18 97.4 5.3 48 172-222 13-60 (81)
25 4ayc_A E3 ubiquitin-protein li 99.4 4.9E-14 1.7E-18 109.1 2.2 48 173-223 52-99 (138)
26 1t1h_A Gspef-atpub14, armadill 99.4 1.7E-13 5.7E-18 95.5 4.5 51 171-224 5-56 (78)
27 2egp_A Tripartite motif-contai 99.4 8.3E-14 2.9E-18 97.1 2.8 51 171-224 9-66 (79)
28 2ecw_A Tripartite motif-contai 99.4 3.2E-13 1.1E-17 95.0 5.8 51 172-225 17-73 (85)
29 2ysj_A Tripartite motif-contai 99.4 6.2E-13 2.1E-17 88.9 6.2 44 171-217 17-63 (63)
30 3lrq_A E3 ubiquitin-protein li 99.4 1.4E-13 4.7E-18 100.8 3.0 50 173-225 21-72 (100)
31 2ecv_A Tripartite motif-contai 99.4 4E-13 1.4E-17 94.5 5.2 51 172-225 17-73 (85)
32 2ct0_A Non-SMC element 1 homol 99.4 4.3E-13 1.5E-17 92.9 4.6 52 173-226 14-67 (74)
33 2ecj_A Tripartite motif-contai 99.3 8.7E-13 3E-17 86.4 4.9 43 172-217 13-58 (58)
34 3ztg_A E3 ubiquitin-protein li 99.3 1.2E-12 4.2E-17 93.9 5.9 49 171-222 10-61 (92)
35 1g25_A CDK-activating kinase a 99.3 7.6E-13 2.6E-17 89.0 4.2 53 173-225 2-57 (65)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 4.2E-13 1.4E-17 102.0 3.2 52 173-224 6-61 (133)
37 2y43_A E3 ubiquitin-protein li 99.3 4.6E-13 1.6E-17 97.6 3.2 48 174-224 22-70 (99)
38 2ckl_A Polycomb group ring fin 99.3 1.1E-12 3.7E-17 97.1 3.9 48 173-223 14-62 (108)
39 4ap4_A E3 ubiquitin ligase RNF 99.3 1.8E-12 6.3E-17 98.4 4.0 54 172-225 70-127 (133)
40 3fl2_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 98.9 3.1 48 173-223 51-99 (124)
41 3hct_A TNF receptor-associated 99.3 2.4E-12 8.3E-17 96.8 3.8 51 171-224 15-66 (118)
42 1jm7_A BRCA1, breast cancer ty 99.3 3.4E-12 1.2E-16 94.7 4.3 49 174-225 21-72 (112)
43 2kr4_A Ubiquitin conjugation f 99.2 6.6E-12 2.3E-16 89.2 5.3 51 171-224 11-61 (85)
44 2ckl_B Ubiquitin ligase protei 99.2 3.3E-12 1.1E-16 101.4 2.7 49 173-223 53-102 (165)
45 1rmd_A RAG1; V(D)J recombinati 99.2 4.2E-12 1.4E-16 95.1 3.0 49 174-225 23-72 (116)
46 3l11_A E3 ubiquitin-protein li 99.2 1.4E-12 4.7E-17 97.6 0.1 48 172-222 13-61 (115)
47 1e4u_A Transcriptional repress 99.2 1.6E-11 5.4E-16 86.0 5.4 53 171-224 8-63 (78)
48 1z6u_A NP95-like ring finger p 99.2 5.3E-12 1.8E-16 99.1 3.3 49 173-224 77-126 (150)
49 1wgm_A Ubiquitin conjugation f 99.2 1.5E-11 5.2E-16 89.7 5.5 50 172-224 20-70 (98)
50 2kre_A Ubiquitin conjugation f 99.2 1.7E-11 5.7E-16 89.8 5.4 51 171-224 26-76 (100)
51 1bor_A Transcription factor PM 99.2 3.5E-12 1.2E-16 83.5 1.3 48 172-225 4-51 (56)
52 3knv_A TNF receptor-associated 99.2 6E-12 2E-16 97.8 2.3 50 171-223 28-78 (141)
53 2vje_A E3 ubiquitin-protein li 99.2 1.4E-11 4.6E-16 83.0 3.1 47 173-222 7-56 (64)
54 1jm7_B BARD1, BRCA1-associated 99.1 1.6E-11 5.3E-16 92.2 1.3 47 173-224 21-68 (117)
55 2vje_B MDM4 protein; proto-onc 99.1 4.6E-11 1.6E-15 80.1 2.7 47 173-222 6-55 (63)
56 2yu4_A E3 SUMO-protein ligase 99.1 7.6E-11 2.6E-15 85.2 3.6 49 172-223 5-63 (94)
57 2y1n_A E3 ubiquitin-protein li 99.0 9.9E-11 3.4E-15 104.4 4.7 48 174-224 332-380 (389)
58 4ic3_A E3 ubiquitin-protein li 99.0 4E-11 1.4E-15 82.9 1.5 43 174-223 24-67 (74)
59 3hcs_A TNF receptor-associated 99.0 1.3E-10 4.4E-15 92.5 3.7 52 170-224 14-66 (170)
60 1vyx_A ORF K3, K3RING; zinc-bi 99.0 4.5E-10 1.5E-14 74.6 4.5 49 172-223 4-59 (60)
61 2c2l_A CHIP, carboxy terminus 98.9 4.7E-10 1.6E-14 95.2 4.5 51 171-224 205-256 (281)
62 3k1l_B Fancl; UBC, ring, RWD, 98.9 2.8E-10 9.5E-15 99.4 2.1 52 172-223 306-373 (381)
63 2ecg_A Baculoviral IAP repeat- 98.9 1E-09 3.6E-14 75.8 3.1 43 174-223 25-68 (75)
64 2ea5_A Cell growth regulator w 98.9 2.3E-09 8E-14 72.8 4.6 45 172-223 13-58 (68)
65 2f42_A STIP1 homology and U-bo 98.8 1.8E-09 6.1E-14 86.9 4.6 51 171-224 103-154 (179)
66 2yho_A E3 ubiquitin-protein li 98.8 1.2E-09 4.1E-14 76.4 0.9 42 174-222 18-60 (79)
67 1wim_A KIAA0161 protein; ring 98.8 1.5E-09 5E-14 78.2 1.3 48 173-220 4-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.8 2.9E-09 9.9E-14 70.8 2.6 48 175-225 4-52 (61)
69 3htk_C E3 SUMO-protein ligase 98.7 6.3E-09 2.2E-13 87.9 3.3 52 171-224 178-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.5 1.5E-08 5E-13 89.5 1.3 44 172-222 293-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.2 7.9E-07 2.7E-11 64.1 2.7 47 176-224 3-50 (101)
72 3nw0_A Non-structural maintena 98.0 3E-06 1E-10 71.0 3.8 50 173-224 179-230 (238)
73 2ko5_A Ring finger protein Z; 97.0 0.00016 5.6E-09 51.2 0.9 47 173-224 27-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0035 1.2E-07 44.8 2.4 35 173-207 2-36 (101)
75 2lri_C Autoimmune regulator; Z 95.0 0.02 6.7E-07 38.1 3.4 46 173-221 11-60 (66)
76 1wil_A KIAA1045 protein; ring 93.6 0.095 3.3E-06 36.3 4.5 34 173-207 14-47 (89)
77 2ysm_A Myeloid/lymphoid or mix 91.2 0.065 2.2E-06 38.9 1.2 39 171-209 4-42 (111)
78 1f62_A Transcription factor WS 90.3 0.15 5.2E-06 31.5 2.2 44 176-219 2-49 (51)
79 2l5u_A Chromodomain-helicase-D 90.0 0.1 3.4E-06 33.9 1.2 46 172-220 9-58 (61)
80 1mm2_A MI2-beta; PHD, zinc fin 89.4 0.1 3.5E-06 33.9 0.8 47 172-221 7-57 (61)
81 3m62_A Ubiquitin conjugation f 89.3 0.26 8.7E-06 48.5 3.9 52 170-224 887-939 (968)
82 1fp0_A KAP-1 corepressor; PHD 88.8 0.17 5.7E-06 35.5 1.7 52 172-226 23-78 (88)
83 2puy_A PHD finger protein 21A; 88.1 0.033 1.1E-06 36.0 -2.3 49 173-224 4-56 (60)
84 2k16_A Transcription initiatio 87.9 0.077 2.6E-06 35.7 -0.5 51 172-222 16-70 (75)
85 2yql_A PHD finger protein 21A; 87.7 0.053 1.8E-06 34.5 -1.4 46 171-219 6-55 (56)
86 1we9_A PHD finger family prote 86.7 0.084 2.9E-06 34.4 -0.9 50 171-220 3-58 (64)
87 2cs3_A Protein C14ORF4, MY039 86.6 0.47 1.6E-05 32.5 2.8 34 174-210 15-52 (93)
88 1weo_A Cellulose synthase, cat 85.4 1.5 5E-05 30.6 4.8 48 175-222 17-69 (93)
89 3i2d_A E3 SUMO-protein ligase 84.2 0.77 2.6E-05 40.4 3.8 49 175-225 250-302 (371)
90 4fo9_A E3 SUMO-protein ligase 83.8 0.86 2.9E-05 40.0 3.8 49 175-225 216-268 (360)
91 3v43_A Histone acetyltransfera 83.6 1.9 6.6E-05 31.1 5.2 33 173-205 4-42 (112)
92 1xwh_A Autoimmune regulator; P 83.4 0.17 5.8E-06 33.3 -0.6 46 172-220 6-55 (66)
93 2l43_A N-teminal domain from h 82.3 0.22 7.4E-06 34.8 -0.4 52 170-221 21-76 (88)
94 2e6s_A E3 ubiquitin-protein li 82.3 0.18 6.1E-06 34.4 -0.9 45 175-219 27-76 (77)
95 2lbm_A Transcriptional regulat 81.9 1.3 4.4E-05 33.7 3.7 49 169-220 58-117 (142)
96 2vpb_A Hpygo1, pygopus homolog 81.3 1 3.6E-05 29.4 2.7 35 171-205 5-41 (65)
97 3v43_A Histone acetyltransfera 79.8 0.52 1.8E-05 34.2 0.9 45 175-219 62-111 (112)
98 3asl_A E3 ubiquitin-protein li 79.8 0.19 6.5E-06 33.5 -1.4 45 176-220 20-69 (70)
99 2yt5_A Metal-response element- 79.1 0.52 1.8E-05 30.6 0.6 51 171-221 3-62 (66)
100 2e6r_A Jumonji/ARID domain-con 79.0 0.16 5.5E-06 35.8 -2.1 48 172-219 14-65 (92)
101 1weu_A Inhibitor of growth fam 76.4 1.7 5.9E-05 30.4 2.7 46 173-222 35-87 (91)
102 1wen_A Inhibitor of growth fam 75.5 1.6 5.4E-05 29.0 2.2 46 173-222 15-67 (71)
103 3ql9_A Transcriptional regulat 73.2 2.7 9.2E-05 31.4 3.2 48 169-219 52-110 (129)
104 2ku3_A Bromodomain-containing 72.5 2.8 9.5E-05 27.8 2.9 50 170-219 12-65 (71)
105 2lv9_A Histone-lysine N-methyl 72.5 0.86 3E-05 32.3 0.3 44 175-219 29-75 (98)
106 2kwj_A Zinc finger protein DPF 72.0 0.12 4E-06 37.9 -4.5 49 176-224 60-112 (114)
107 3ask_A E3 ubiquitin-protein li 71.6 0.81 2.8E-05 37.5 0.0 45 175-219 175-224 (226)
108 1z2q_A LM5-1; membrane protein 70.1 4.4 0.00015 27.6 3.6 39 169-207 16-55 (84)
109 3t7l_A Zinc finger FYVE domain 67.9 4 0.00014 28.2 3.0 36 173-208 19-55 (90)
110 1wep_A PHF8; structural genomi 66.5 3.3 0.00011 27.8 2.2 47 173-220 11-63 (79)
111 3shb_A E3 ubiquitin-protein li 66.2 0.56 1.9E-05 31.9 -1.8 44 176-219 28-76 (77)
112 1x4u_A Zinc finger, FYVE domai 65.6 4.2 0.00014 27.7 2.7 39 169-207 9-48 (84)
113 2kwj_A Zinc finger protein DPF 65.4 3.9 0.00013 29.5 2.6 33 175-207 2-41 (114)
114 2yw8_A RUN and FYVE domain-con 65.1 4 0.00014 27.7 2.5 39 169-207 14-53 (82)
115 1z60_A TFIIH basal transcripti 64.6 3.1 0.00011 26.7 1.7 43 175-217 16-58 (59)
116 1joc_A EEA1, early endosomal a 60.7 4.9 0.00017 29.6 2.4 40 168-207 63-103 (125)
117 2xb1_A Pygopus homolog 2, B-ce 58.3 4.7 0.00016 28.8 1.9 47 174-220 3-61 (105)
118 2ysm_A Myeloid/lymphoid or mix 56.4 1 3.4E-05 32.4 -2.0 45 176-220 56-104 (111)
119 2kgg_A Histone demethylase jar 56.4 3.1 0.00011 25.6 0.6 43 176-218 4-52 (52)
120 3mjh_B Early endosome antigen 55.2 3 0.0001 23.7 0.4 13 174-186 5-17 (34)
121 3a1b_A DNA (cytosine-5)-methyl 54.2 6.9 0.00023 30.2 2.3 39 169-210 74-114 (159)
122 2zet_C Melanophilin; complex, 53.8 6.1 0.00021 30.3 2.0 32 173-204 67-100 (153)
123 2vnf_A ING 4, P29ING4, inhibit 53.4 1.4 4.7E-05 28.3 -1.5 43 173-219 9-58 (60)
124 4gne_A Histone-lysine N-methyl 53.4 5.2 0.00018 28.8 1.4 42 172-218 13-60 (107)
125 1vfy_A Phosphatidylinositol-3- 53.2 8.9 0.0003 25.2 2.5 32 175-206 12-44 (73)
126 1zbd_B Rabphilin-3A; G protein 52.0 4.9 0.00017 30.1 1.2 34 172-205 53-88 (134)
127 1wfk_A Zinc finger, FYVE domai 51.3 6.6 0.00022 27.0 1.7 36 172-207 7-43 (88)
128 3c6w_A P28ING5, inhibitor of g 50.7 1.7 5.8E-05 27.8 -1.4 43 173-219 8-57 (59)
129 2pv0_B DNA (cytosine-5)-methyl 50.0 13 0.00045 32.7 3.8 47 170-219 89-147 (386)
130 2d8v_A Zinc finger FYVE domain 49.5 9.7 0.00033 24.9 2.1 33 171-207 5-38 (67)
131 2pk7_A Uncharacterized protein 49.0 4.5 0.00016 26.7 0.5 19 206-224 3-21 (69)
132 1wem_A Death associated transc 48.8 15 0.00052 24.1 3.2 45 174-219 16-69 (76)
133 2ri7_A Nucleosome-remodeling f 48.3 2.7 9.4E-05 32.4 -0.8 47 172-219 6-58 (174)
134 2o35_A Hypothetical protein DU 48.1 7.7 0.00026 27.5 1.6 11 199-209 43-53 (105)
135 1y02_A CARP2, FYVE-ring finger 47.8 1.9 6.5E-05 31.8 -1.7 45 173-217 18-63 (120)
136 3fyb_A Protein of unknown func 47.7 7.9 0.00027 27.4 1.6 11 199-209 42-52 (104)
137 1wev_A Riken cDNA 1110020M19; 47.3 2.9 0.0001 28.8 -0.7 49 173-221 15-73 (88)
138 2rsd_A E3 SUMO-protein ligase 46.3 0.9 3.1E-05 29.9 -3.4 44 175-219 11-64 (68)
139 2jvx_A NF-kappa-B essential mo 45.4 3.8 0.00013 22.2 -0.3 11 212-222 4-14 (28)
140 3zyq_A Hepatocyte growth facto 44.3 10 0.00034 30.7 2.0 35 173-207 163-198 (226)
141 3vhs_A ATPase wrnip1; zinc fin 43.8 5.2 0.00018 21.1 0.1 10 213-222 8-17 (29)
142 1dvp_A HRS, hepatocyte growth 43.8 10 0.00035 30.4 2.0 34 174-207 161-195 (220)
143 2dj7_A Actin-binding LIM prote 43.2 24 0.0008 23.3 3.5 39 174-222 15-53 (80)
144 2jne_A Hypothetical protein YF 42.8 6.7 0.00023 27.7 0.6 41 175-223 33-73 (101)
145 2gmg_A Hypothetical protein PF 42.1 7 0.00024 28.0 0.6 29 190-223 68-96 (105)
146 2ct7_A Ring finger protein 31; 41.7 5.6 0.00019 27.1 0.1 33 177-209 28-63 (86)
147 2jny_A Uncharacterized BCR; st 40.8 4.5 0.00015 26.6 -0.5 18 206-223 5-22 (67)
148 1zfo_A LAsp-1; LIM domain, zin 39.9 12 0.0004 20.3 1.2 27 175-203 4-30 (31)
149 3o70_A PHD finger protein 13; 38.7 11 0.00037 24.6 1.1 47 172-219 17-66 (68)
150 1x62_A C-terminal LIM domain p 38.4 19 0.00065 23.5 2.4 37 174-221 15-51 (79)
151 2g6q_A Inhibitor of growth pro 37.9 3.5 0.00012 26.5 -1.4 43 174-220 11-60 (62)
152 2kpi_A Uncharacterized protein 37.5 3.1 0.00011 26.3 -1.7 13 211-223 10-22 (56)
153 3bbo_3 Ribosomal protein L33; 36.7 15 0.00052 23.9 1.6 19 208-226 46-64 (66)
154 2jmo_A Parkin; IBR, E3 ligase, 36.3 9.8 0.00033 25.5 0.6 19 194-214 55-73 (80)
155 2co8_A NEDD9 interacting prote 35.4 29 0.001 22.8 3.0 39 173-221 14-52 (82)
156 2cu8_A Cysteine-rich protein 2 33.4 19 0.00065 23.2 1.7 38 175-222 10-47 (76)
157 1x4l_A Skeletal muscle LIM-pro 33.3 28 0.00096 22.0 2.5 39 175-221 6-45 (72)
158 2lcq_A Putative toxin VAPC6; P 32.9 10 0.00036 28.8 0.3 27 191-223 134-160 (165)
159 2d8x_A Protein pinch; LIM doma 32.8 18 0.00061 22.9 1.4 10 176-185 7-16 (70)
160 6rxn_A Rubredoxin; electron tr 32.8 9.2 0.00031 23.1 -0.0 31 175-220 5-39 (46)
161 1x64_A Alpha-actinin-2 associa 32.3 48 0.0016 22.0 3.7 38 174-222 25-62 (89)
162 1wew_A DNA-binding family prot 31.7 31 0.001 22.8 2.5 48 173-221 15-73 (78)
163 3mpx_A FYVE, rhogef and PH dom 31.4 10 0.00034 33.3 0.0 52 170-221 371-430 (434)
164 1iml_A CRIP, cysteine rich int 31.3 11 0.00038 24.4 0.2 45 173-221 26-71 (76)
165 2jr6_A UPF0434 protein NMA0874 31.2 4.7 0.00016 26.5 -1.6 9 175-183 9-17 (68)
166 2dar_A PDZ and LIM domain prot 30.7 47 0.0016 22.1 3.5 37 175-222 26-62 (90)
167 2cor_A Pinch protein; LIM doma 30.6 47 0.0016 21.6 3.4 36 175-221 16-51 (79)
168 1x61_A Thyroid receptor intera 30.0 45 0.0015 20.9 3.1 33 175-209 34-66 (72)
169 2hf1_A Tetraacyldisaccharide-1 29.9 4.6 0.00016 26.6 -1.9 10 213-222 10-19 (68)
170 1g47_A Pinch protein; LIM doma 28.5 63 0.0021 20.5 3.7 40 174-222 11-50 (77)
171 2js4_A UPF0434 protein BB2007; 27.5 4.9 0.00017 26.6 -2.1 11 174-184 8-18 (70)
172 2zjr_1 50S ribosomal protein L 27.4 11 0.00036 23.8 -0.4 19 208-226 35-53 (55)
173 1wig_A KIAA1808 protein; LIM d 27.4 53 0.0018 21.0 3.1 10 176-185 7-16 (73)
174 1x63_A Skeletal muscle LIM-pro 27.0 49 0.0017 21.4 2.9 39 175-222 16-54 (82)
175 2ftc_P Mitochondrial ribosomal 25.8 12 0.00042 23.2 -0.3 19 208-226 33-51 (52)
176 2jrp_A Putative cytoplasmic pr 25.8 25 0.00084 23.9 1.2 40 175-222 3-42 (81)
177 2l3k_A Rhombotin-2, linker, LI 25.7 39 0.0013 24.1 2.4 35 173-208 35-69 (123)
178 2xjy_A Rhombotin-2; oncoprotei 25.6 45 0.0015 23.7 2.7 26 196-221 51-76 (131)
179 1wd2_A Ariadne-1 protein homol 24.4 18 0.00061 23.0 0.2 37 175-211 7-48 (60)
180 1m3v_A FLIN4, fusion of the LI 24.0 50 0.0017 23.4 2.7 49 175-223 33-81 (122)
181 1v6g_A Actin binding LIM prote 23.9 44 0.0015 21.7 2.2 37 175-222 16-52 (81)
182 2a20_A Regulating synaptic mem 23.8 55 0.0019 20.8 2.4 48 172-219 7-59 (62)
183 1nkw_1 50S ribosomal protein L 23.4 16 0.00056 24.9 -0.1 19 208-226 62-80 (82)
184 1wyh_A SLIM 2, skeletal muscle 23.4 54 0.0018 20.5 2.5 28 175-203 6-33 (72)
185 1x6a_A LIMK-2, LIM domain kina 23.0 63 0.0022 20.8 2.9 12 196-207 63-74 (81)
186 1x68_A FHL5 protein; four-and- 22.8 45 0.0015 21.3 2.1 40 175-222 6-46 (76)
187 2csz_A Synaptotagmin-like prot 22.7 84 0.0029 21.0 3.3 32 172-203 23-56 (76)
188 2kdx_A HYPA, hydrogenase/ureas 22.0 35 0.0012 24.5 1.4 23 192-220 76-99 (119)
189 1x4k_A Skeletal muscle LIM-pro 21.7 48 0.0016 20.8 2.0 27 176-203 7-33 (72)
190 2cur_A Skeletal muscle LIM-pro 20.8 49 0.0017 20.6 1.9 10 176-185 7-16 (69)
191 1l8d_A DNA double-strand break 20.5 23 0.00079 24.9 0.2 9 213-221 49-57 (112)
192 1nyp_A Pinch protein; LIM doma 20.5 54 0.0018 20.2 2.0 37 175-222 6-42 (66)
193 3f6q_B LIM and senescent cell 20.1 30 0.001 21.7 0.7 39 175-222 12-50 (72)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=6.6e-17 Score=105.44 Aligned_cols=51 Identities=29% Similarity=0.752 Sum_probs=46.1
Q ss_pred CCCcccccccccccCCCCceecC-CCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTK-CSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
+++..|+||++.|..++..+.++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45679999999999877777776 9999999999999999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-17 Score=113.03 Aligned_cols=54 Identities=22% Similarity=0.709 Sum_probs=48.3
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
.+++..|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345679999999999877788999999999999999999999999999988653
No 3
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.65 E-value=6.4e-17 Score=116.77 Aligned_cols=53 Identities=32% Similarity=0.751 Sum_probs=47.9
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
.+++..|+||++.|..+...+.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34667999999999988888889999999999999999999999999998753
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=106.89 Aligned_cols=54 Identities=24% Similarity=0.632 Sum_probs=48.1
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
.+.+..|+||++.|..+..++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999998877888999999999999999999999999999987654
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-16 Score=107.59 Aligned_cols=53 Identities=28% Similarity=0.834 Sum_probs=47.3
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
..++..|+||++.|......++++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34567999999999988888888999999999999999999999999998754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=110.51 Aligned_cols=53 Identities=26% Similarity=0.724 Sum_probs=42.5
Q ss_pred CCcccccccccccC-----------CC-CceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 173 DEDVCPTCLEEYTP-----------EN-PKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 173 ~~~~C~ICle~~~~-----------~~-~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
+++.|+||+++|.. ++ .+++++|+|.||..||.+||+++.+||+||+++.+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 45678888887753 33 4455569999999999999999999999999987653
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=5.2e-16 Score=108.39 Aligned_cols=55 Identities=33% Similarity=0.762 Sum_probs=48.8
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
..++..|+||++.|......+.++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 3456799999999998777888999999999999999999999999999987654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.58 E-value=1e-15 Score=99.62 Aligned_cols=50 Identities=28% Similarity=0.624 Sum_probs=44.4
Q ss_pred CCcccccccccccC-CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 173 DEDVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 173 ~~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
++..|+||++.|.. ++..++++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999965 456888999999999999999999999999999874
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.55 E-value=2.1e-15 Score=111.94 Aligned_cols=53 Identities=25% Similarity=0.583 Sum_probs=46.0
Q ss_pred CCcccccccccccCC---------------CCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 173 DEDVCPTCLEEYTPE---------------NPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 173 ~~~~C~ICle~~~~~---------------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+++.+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceeec
Confidence 467999999998853 24677999999999999999999999999999987754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-15 Score=100.81 Aligned_cols=53 Identities=25% Similarity=0.689 Sum_probs=45.3
Q ss_pred CCCCcccccccccccC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 171 SEDEDVCPTCLEEYTP----ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
..+...|+||++.|.. +..+++++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456799999999975 2345889999999999999999999999999998754
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=2.2e-15 Score=103.04 Aligned_cols=55 Identities=24% Similarity=0.670 Sum_probs=47.3
Q ss_pred CCCCcccccccccccC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 171 SEDEDVCPTCLEEYTP----ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
.+++..|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+..++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 3456799999999875 345589999999999999999999999999999987654
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.51 E-value=1.1e-14 Score=108.76 Aligned_cols=52 Identities=33% Similarity=0.662 Sum_probs=42.2
Q ss_pred CCcccccccccccCCC---------------CceecCCCCccCHHHHHHHH-----hcCCCCCccCCCCccc
Q 040167 173 DEDVCPTCLEEYTPEN---------------PKIVTKCSHHFHLGCIYEWM-----ERSENCPVCGKVMVFD 224 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~---------------~~~~l~C~H~FH~~CI~~Wl-----~~~~tCPvCr~~v~~~ 224 (227)
.++.|+|||+.|.... ..++++|+|.||..||.+|| +.+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3469999999996532 33489999999999999999 4567999999987543
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.51 E-value=4.4e-15 Score=99.34 Aligned_cols=53 Identities=25% Similarity=0.677 Sum_probs=45.7
Q ss_pred CCcccccccccccC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 173 DEDVCPTCLEEYTP----ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 173 ~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
++..|+||++.+.. ++..+.++|||.||..||.+|++.+.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 45789999999875 245588999999999999999999999999999887654
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=98.88 Aligned_cols=53 Identities=25% Similarity=0.490 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
.+++..|+||++.+.+ ++.+++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456799999999876 4444599999999999999999999999999887654
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.2e-15 Score=103.32 Aligned_cols=55 Identities=27% Similarity=0.753 Sum_probs=46.3
Q ss_pred CCCCCcccccccccccCCCCceecCCC-----CccCHHHHHHHHhcC--CCCCccCCCCcccC
Q 040167 170 PSEDEDVCPTCLEEYTPENPKIVTKCS-----HHFHLGCIYEWMERS--ENCPVCGKVMVFDE 225 (227)
Q Consensus 170 ~~~~~~~C~ICle~~~~~~~~~~l~C~-----H~FH~~CI~~Wl~~~--~tCPvCr~~v~~~e 225 (227)
...+++.|.||+++|..++.+ ++||+ |.||..||.+||..+ .+||+||+.+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 344567999999999877766 58996 999999999999766 48999999987754
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.7e-15 Score=101.41 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=44.2
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
.++..|+||++.+.. .+.++|+|.||..||.+|+..+.+||+||+.+..+
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 355789999999876 67889999999999999999999999999988643
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=95.55 Aligned_cols=51 Identities=27% Similarity=0.586 Sum_probs=43.6
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHH-hcCCCCCccCCCCcccC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWM-ERSENCPVCGKVMVFDE 225 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl-~~~~tCPvCr~~v~~~e 225 (227)
.++..|+||++.+.. .+.++|||.||..||.+|+ ....+||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 456799999999976 5558999999999999999 45679999999987664
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.47 E-value=4.6e-15 Score=111.78 Aligned_cols=53 Identities=25% Similarity=0.583 Sum_probs=1.1
Q ss_pred CCcccccccccccCC---------------CCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 173 DEDVCPTCLEEYTPE---------------NPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 173 ~~~~C~ICle~~~~~---------------~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+++.++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 457999999999752 24455799999999999999999999999999987654
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=99.11 Aligned_cols=50 Identities=32% Similarity=0.822 Sum_probs=44.3
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
.+...|+||++.+.. +.++|+|.||..||.+|++++.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456799999999875 78999999999999999999999999999887554
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.47 E-value=2.5e-14 Score=97.03 Aligned_cols=49 Identities=29% Similarity=0.756 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
+.+..|+||++.+.. +.+.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 345789999999864 4588999999999999999999999999999875
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5e-14 Score=96.81 Aligned_cols=52 Identities=29% Similarity=0.675 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHh---cCCCCCccCCCCcccC
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWME---RSENCPVCGKVMVFDE 225 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvCr~~v~~~e 225 (227)
.+++..|+||++.|.. .+.++|||.||..||.+|++ ....||+||+.+..++
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3456799999999886 67789999999999999996 4568999999987765
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=100.04 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=46.0
Q ss_pred CCCCcccccccccccCCCC-ceecCCCCccCHHHHHHHHhcC---CCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENP-KIVTKCSHHFHLGCIYEWMERS---ENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~-~~~l~C~H~FH~~CI~~Wl~~~---~tCPvCr~~v~~~ 224 (227)
..+...|+||++.|...+. .+.++|||.||..||.+|++.+ .+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3456799999999987553 7788999999999999999876 7999999987654
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.46 E-value=6.2e-14 Score=97.04 Aligned_cols=52 Identities=27% Similarity=0.525 Sum_probs=43.4
Q ss_pred CCCCcccccccccccCCCCceecC-CCCccCHHHHHHHHhcC--CCCCccCCCCcccC
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTK-CSHHFHLGCIYEWMERS--ENCPVCGKVMVFDE 225 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~--~tCPvCr~~v~~~e 225 (227)
..++..|+||++.|.+ .+.++ |+|.||..||.+|++.+ .+||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3456799999999986 66788 99999999999999866 68999999865443
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=97.43 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
++...|+||++.|.. .++++|+|.||..||.+|++...+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345689999999976 678999999999999999999999999999874
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.40 E-value=4.9e-14 Score=109.06 Aligned_cols=48 Identities=35% Similarity=0.795 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
++..|+||++.|.+ +++++|||.||..||.+|+..+.+||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34589999999986 7789999999999999999999999999998754
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.7e-13 Score=95.52 Aligned_cols=51 Identities=16% Similarity=0.453 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-SENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~v~~~ 224 (227)
..++..|+||++.|.+ .++++|||.||..||.+|++. +.+||+||+.+..+
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3456799999999986 677899999999999999986 78999999988654
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=8.3e-14 Score=97.07 Aligned_cols=51 Identities=33% Similarity=0.739 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhc-------CCCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-------SENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-------~~tCPvCr~~v~~~ 224 (227)
.+++..|+||++.|.. .+.++|||.||..||.+|++. ...||+||+.+...
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4456799999999976 566899999999999999976 66899999988654
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=3.2e-13 Score=95.04 Aligned_cols=51 Identities=35% Similarity=0.737 Sum_probs=43.9
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhc------CCCCCccCCCCcccC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER------SENCPVCGKVMVFDE 225 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~------~~tCPvCr~~v~~~e 225 (227)
.++..|+||++.|.. .++++|+|.||..||..|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 456799999999876 567899999999999999987 678999999887543
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=6.2e-13 Score=88.85 Aligned_cols=44 Identities=34% Similarity=0.823 Sum_probs=38.1
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHh---cCCCCCcc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWME---RSENCPVC 217 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvC 217 (227)
.+++..|+||++.|.+ .++++|||.||..||.+|++ ...+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4466799999999986 66789999999999999997 45689998
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=100.81 Aligned_cols=50 Identities=24% Similarity=0.642 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCCcee-cCCCCccCHHHHHHHHhcC-CCCCccCCCCcccC
Q 040167 173 DEDVCPTCLEEYTPENPKIV-TKCSHHFHLGCIYEWMERS-ENCPVCGKVMVFDE 225 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~-l~C~H~FH~~CI~~Wl~~~-~tCPvCr~~v~~~e 225 (227)
++..|+||++.|.. .+. ++|||.||..||.+|++.+ .+||+||+.+..++
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 34689999999975 556 9999999999999999887 69999999886543
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=94.52 Aligned_cols=51 Identities=29% Similarity=0.687 Sum_probs=43.9
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhc------CCCCCccCCCCcccC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER------SENCPVCGKVMVFDE 225 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~------~~tCPvCr~~v~~~e 225 (227)
.++..|+||++.|.. .+.++|+|.||..||..|++. ...||+||+.+..++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 455799999999876 566899999999999999987 789999999887543
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.3e-13 Score=92.89 Aligned_cols=52 Identities=17% Similarity=0.533 Sum_probs=43.9
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC--CCCCccCCCCcccCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS--ENCPVCGKVMVFDET 226 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPvCr~~v~~~e~ 226 (227)
..+.|+||.+.+..+. ....|+|.||..||++||+++ .+||+||+.+.++..
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 4579999999998643 344899999999999999887 899999999987653
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.7e-13 Score=86.39 Aligned_cols=43 Identities=40% Similarity=0.957 Sum_probs=36.9
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHH---hcCCCCCcc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWM---ERSENCPVC 217 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl---~~~~tCPvC 217 (227)
.++..|+||++.+.. .++++|+|.||..||.+|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456799999999986 5678999999999999995 456789998
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=93.89 Aligned_cols=49 Identities=29% Similarity=0.562 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCCCCceecC-CCCccCHHHHHHHHhcC--CCCCccCCCCc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTK-CSHHFHLGCIYEWMERS--ENCPVCGKVMV 222 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~--~tCPvCr~~v~ 222 (227)
..++..|+||++.|.+ .+.++ |||.||..||.+|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4466899999999986 67788 99999999999999754 58999999873
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=7.6e-13 Score=89.04 Aligned_cols=53 Identities=28% Similarity=0.684 Sum_probs=42.0
Q ss_pred CCcccccccc-cccCCC-CceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcccC
Q 040167 173 DEDVCPTCLE-EYTPEN-PKIVTKCSHHFHLGCIYEWMER-SENCPVCGKVMVFDE 225 (227)
Q Consensus 173 ~~~~C~ICle-~~~~~~-~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~v~~~e 225 (227)
++..|+||++ .|.... ..++++|||.||..||.+|+.+ +..||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3568999999 676532 2356899999999999999754 468999999886553
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=4.2e-13 Score=102.01 Aligned_cols=52 Identities=25% Similarity=0.702 Sum_probs=45.2
Q ss_pred CCcccccccccccC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 173 DEDVCPTCLEEYTP----ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 173 ~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
++..|+||++.|.+ +...+.++|||.||..||.+|++.+.+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 45789999999975 24458999999999999999999999999999987654
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=4.6e-13 Score=97.56 Aligned_cols=48 Identities=23% Similarity=0.601 Sum_probs=41.8
Q ss_pred CcccccccccccCCCCceec-CCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 174 EDVCPTCLEEYTPENPKIVT-KCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
+..|+||++.|.+ .+.+ +|||.||..||.+|++.+.+||+||+.+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 4689999999986 4444 9999999999999999999999999987653
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.30 E-value=1.1e-12 Score=97.14 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=42.2
Q ss_pred CCcccccccccccCCCCceec-CCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 173 DEDVCPTCLEEYTPENPKIVT-KCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
++..|+||++.|.+ .+.+ +|||.||..||..|++.+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45799999999975 5554 999999999999999999999999998764
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.8e-12 Score=98.41 Aligned_cols=54 Identities=24% Similarity=0.680 Sum_probs=46.6
Q ss_pred CCCcccccccccccC----CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 172 EDEDVCPTCLEEYTP----ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 172 ~~~~~C~ICle~~~~----~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
++...|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 456789999999875 344588999999999999999999999999999987654
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.27 E-value=1.4e-12 Score=98.93 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCcc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE-NCPVCGKVMVF 223 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~v~~ 223 (227)
++..|+||++.|.. .+.++|||.||..||..|+..+. +||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 44689999999986 77889999999999999997554 89999998865
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.26 E-value=2.4e-12 Score=96.80 Aligned_cols=51 Identities=27% Similarity=0.646 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE-NCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~v~~~ 224 (227)
.+++..|+||++.+.. .+.++|||.||..||.+|++.+. +||+||+.+..+
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 3456799999999986 67789999999999999997765 999999988654
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=3.4e-12 Score=94.65 Aligned_cols=49 Identities=29% Similarity=0.657 Sum_probs=41.6
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC---CCCccCCCCcccC
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE---NCPVCGKVMVFDE 225 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~---tCPvCr~~v~~~e 225 (227)
...|+||++.|.. .+.++|||.||..||.+|+..+. +||+||+.+...+
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 3589999999875 56689999999999999998764 8999999886543
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.24 E-value=6.6e-12 Score=89.24 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=45.7
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
..++..|+||++.|.+ .++++|||.|++.||.+|+..+.+||+||+.+...
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 3456899999999998 88899999999999999999889999999988654
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.21 E-value=3.3e-12 Score=101.42 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-SENCPVCGKVMVF 223 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~v~~ 223 (227)
++..|+||++.|.. ++.+++|||.||..||.+|++. +.+||+||+.+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 44699999999986 4444599999999999999987 7789999998853
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.21 E-value=4.2e-12 Score=95.06 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=42.9
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCcccC
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-SENCPVCGKVMVFDE 225 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~v~~~e 225 (227)
+..|+||++.+.+ .+.++|||.||..||.+|++. ..+||+||+.+...+
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4689999999976 677999999999999999986 679999999886543
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.20 E-value=1.4e-12 Score=97.55 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhc-CCCCCccCCCCc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-SENCPVCGKVMV 222 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-~~tCPvCr~~v~ 222 (227)
.++..|+||++.|.. .+.++|||.||..||.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 345789999999886 677899999999999999966 678999999875
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=1.6e-11 Score=85.97 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=41.2
Q ss_pred CCCCcccccccccccCCCCceec--CCCCccCHHHHHHHHh-cCCCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVT--KCSHHFHLGCIYEWME-RSENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~-~~~tCPvCr~~v~~~ 224 (227)
.+++..|+||++.+...+. +.+ +|||.||..||..|++ ....||+||+.+...
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4566799999999865333 334 5999999999999984 456899999987543
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=5.3e-12 Score=99.07 Aligned_cols=49 Identities=20% Similarity=0.487 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCccc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE-NCPVCGKVMVFD 224 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~v~~~ 224 (227)
++..|+||++.|.+ .++++|||.||..||..|+.... +||+||+.+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34689999999986 77799999999999999998665 899999988754
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.20 E-value=1.5e-11 Score=89.75 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=45.4
Q ss_pred CCCcccccccccccCCCCceecCCC-CccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCS-HHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~-H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
.++..||||++.|.+ +++++|| |.|++.||.+||..+.+||+||+++...
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 456899999999998 8889999 9999999999999888999999988654
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.19 E-value=1.7e-11 Score=89.83 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=45.8
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
..++..||||++.|.+ +++++|||.|++.||.+|+..+.+||+||+++...
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 3466899999999998 88899999999999999999889999999988654
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=3.5e-12 Score=83.50 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
.++..|+||++.|.. .++++|+|.||..||..| +..||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 355789999999986 678999999999999884 678999999987654
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.17 E-value=6e-12 Score=97.80 Aligned_cols=50 Identities=18% Similarity=0.518 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC-CCCccCCCCcc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE-NCPVCGKVMVF 223 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~v~~ 223 (227)
.+++..|+||++.+.. .+.++|||.||..||.+|++... +||+||+++.+
T Consensus 28 l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4566799999999986 67799999999999999998665 89999997654
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.16 E-value=1.4e-11 Score=82.96 Aligned_cols=47 Identities=21% Similarity=0.473 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCCceec--CCCCc-cCHHHHHHHHhcCCCCCccCCCCc
Q 040167 173 DEDVCPTCLEEYTPENPKIVT--KCSHH-FHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l--~C~H~-FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
++..|+||++.+.+ .+.+ ||||. |+..|+..|++.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45689999998765 5555 99999 899999999999999999999874
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.6e-11 Score=92.21 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCCceec-CCCCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 173 DEDVCPTCLEEYTPENPKIVT-KCSHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
++..|+||++.|.. .+.+ +|||.||..||..|+. ..||+||+.+...
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 34689999999975 5566 9999999999999997 7899999988654
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.07 E-value=4.6e-11 Score=80.07 Aligned_cols=47 Identities=17% Similarity=0.393 Sum_probs=40.3
Q ss_pred CCcccccccccccCCCCceec--CCCCc-cCHHHHHHHHhcCCCCCccCCCCc
Q 040167 173 DEDVCPTCLEEYTPENPKIVT--KCSHH-FHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l--~C~H~-FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
.+..|+||++...+ .+++ ||||. |+..|+.+|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45689999998765 4455 99998 999999999998899999999874
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=7.6e-11 Score=85.22 Aligned_cols=49 Identities=24% Similarity=0.525 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCCCceecC-CCCccCHHHHHHHHhcC------CCCCc--cCCC-Ccc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTK-CSHHFHLGCIYEWMERS------ENCPV--CGKV-MVF 223 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~-C~H~FH~~CI~~Wl~~~------~tCPv--Cr~~-v~~ 223 (227)
.++..||||++.|.+ +++++ |||.|++.||.+||..+ .+||+ |++. +..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 456799999999987 77775 99999999999999754 48999 9866 543
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.05 E-value=9.9e-11 Score=104.44 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=42.6
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHHHh-cCCCCCccCCCCccc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWME-RSENCPVCGKVMVFD 224 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCr~~v~~~ 224 (227)
...|+||++.+.. ++.++|||.||..||..|+. .+.+||+||+.+...
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4689999999876 78899999999999999998 788999999987643
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=4e-11 Score=82.86 Aligned_cols=43 Identities=26% Similarity=0.712 Sum_probs=38.2
Q ss_pred CcccccccccccCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHH-FHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
+..|+||++.+.+ .+.++|||. ||..||..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4689999999876 788999999 999999999 789999998753
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=92.54 Aligned_cols=52 Identities=29% Similarity=0.690 Sum_probs=44.1
Q ss_pred CCCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC-CCCCccCCCCccc
Q 040167 170 PSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS-ENCPVCGKVMVFD 224 (227)
Q Consensus 170 ~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCr~~v~~~ 224 (227)
..+++..|+||++.+.. .+.++|||.||..||.+|++.+ .+||+||+.+..+
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34456799999999986 6779999999999999999765 4999999988654
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.97 E-value=4.5e-10 Score=74.56 Aligned_cols=49 Identities=33% Similarity=0.735 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCCCceecCCC--C---ccCHHHHHHHHhc--CCCCCccCCCCcc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCS--H---HFHLGCIYEWMER--SENCPVCGKVMVF 223 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~--H---~FH~~CI~~Wl~~--~~tCPvCr~~v~~ 223 (227)
+++..|.||+++.. ++. ++||. | .||..||.+|+.. +.+||+|++.+.+
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45679999999843 333 68865 4 9999999999964 5789999998865
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=4.7e-10 Score=95.21 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC-CCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS-ENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCr~~v~~~ 224 (227)
..+...|+||++.|.+ +++++|||.|+..||.+|+..+ .+||+||+++...
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3456799999999998 8889999999999999999764 4599999988654
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.91 E-value=2.8e-10 Score=99.41 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=40.8
Q ss_pred CCCcccccccccccC-CCCc----eecCCCCccCHHHHHHHHhcC-----------CCCCccCCCCcc
Q 040167 172 EDEDVCPTCLEEYTP-ENPK----IVTKCSHHFHLGCIYEWMERS-----------ENCPVCGKVMVF 223 (227)
Q Consensus 172 ~~~~~C~ICle~~~~-~~~~----~~l~C~H~FH~~CI~~Wl~~~-----------~tCPvCr~~v~~ 223 (227)
+...+|+||++.+.. +... ..++|+|.||..||++||++. .+||+||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999999886 3321 236899999999999999753 479999998753
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=75.75 Aligned_cols=43 Identities=26% Similarity=0.725 Sum_probs=36.6
Q ss_pred CcccccccccccCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHH-FHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
+..|+||++.+.. .+.++|||. ||..|+.. ...||+||+.+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3589999999876 778999999 99999964 4789999998754
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.3e-09 Score=72.79 Aligned_cols=45 Identities=22% Similarity=0.584 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHH-FHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
+++..|+||++...+ ++++||+|. |+..|+.. ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 356789999998776 889999999 99999984 5799999998753
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.85 E-value=1.8e-09 Score=86.86 Aligned_cols=51 Identities=18% Similarity=0.093 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC-CCCCccCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS-ENCPVCGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-~tCPvCr~~v~~~ 224 (227)
..++..||||++.|.+ +++++|||.|+..||..|+..+ .+||+||+++...
T Consensus 103 ip~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 103 IPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CcHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3467899999999997 8889999999999999999764 4699999988654
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.76 E-value=1.2e-09 Score=76.45 Aligned_cols=42 Identities=26% Similarity=0.577 Sum_probs=37.0
Q ss_pred CcccccccccccCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHH-FHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
+..|+||++.+.+ .+.+||||. |+..|+..|. .||+||+.+.
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQLQ----SCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTCS----BCTTTCCBCC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhcC----cCCCCCchhh
Confidence 3589999998876 889999999 9999999873 9999999764
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.5e-09 Score=78.21 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=38.9
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC--------CCCCc--cCCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS--------ENCPV--CGKV 220 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--------~tCPv--Cr~~ 220 (227)
+..+|+||++++...+...+++|+|.||..||..|++.+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456899999998865544556899999999999999642 37999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.76 E-value=2.9e-09 Score=70.84 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=42.8
Q ss_pred cccccccccccCCCCceec-CCCCccCHHHHHHHHhcCCCCCccCCCCcccC
Q 040167 175 DVCPTCLEEYTPENPKIVT-KCSHHFHLGCIYEWMERSENCPVCGKVMVFDE 225 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l-~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~e 225 (227)
..|+|+++.+.+ .+++ ++||.|.+.||.+||+.+.+||+.++++..++
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 589999999986 6667 99999999999999988889999999987654
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.3e-09 Score=87.94 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=42.1
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC--CCCCc--cCCCCccc
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS--ENCPV--CGKVMVFD 224 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~--~tCPv--Cr~~v~~~ 224 (227)
...+..||||++.|.+ |++.+.|||.|++.||.+|++.+ .+||+ |++.+...
T Consensus 178 ~~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 3456799999999976 44446999999999999999764 47999 99977554
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.54 E-value=1.5e-08 Score=89.53 Aligned_cols=44 Identities=20% Similarity=0.690 Sum_probs=39.1
Q ss_pred CCCcccccccccccCCCCceecCCCCc-cCHHHHHHHHhcCCCCCccCCCCc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHH-FHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~-FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
+++..|+||++.+.. .+.++|||. ||..||..| ..||+||+.+.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 356799999999886 888999999 999999998 68999999875
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.16 E-value=7.9e-07 Score=64.10 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=37.7
Q ss_pred ccccccccccCCCCceecCCCCccCHHHHHHHHh-cCCCCCccCCCCccc
Q 040167 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWME-RSENCPVCGKVMVFD 224 (227)
Q Consensus 176 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~-~~~tCPvCr~~v~~~ 224 (227)
-|++|--.+.. ..+++||+|+||.+|+..|.+ ..++||+|+.++..-
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 37778666553 467899999999999999985 467899999987653
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.01 E-value=3e-06 Score=71.03 Aligned_cols=50 Identities=18% Similarity=0.581 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC--CCCccCCCCccc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE--NCPVCGKVMVFD 224 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~--tCPvCr~~v~~~ 224 (227)
.-..|.||.+....+ .....|+|.||..|+.+|++.+. .||.|++.++.+
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 356899999998864 33445999999999999997654 899999988765
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.00 E-value=0.00016 Score=51.21 Aligned_cols=47 Identities=23% Similarity=0.596 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCCceecCC-CCccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKC-SHHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C-~H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
.-..|-.|+-... .++.| .|.+|+.|+..-|.+++.||+|+++++.+
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 4568999987654 36678 79999999999999999999999988764
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.95 E-value=0.0035 Score=44.80 Aligned_cols=35 Identities=14% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHH
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~W 207 (227)
++..|+||++.|.......-+.|+|.|+..||..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 34689999987543333344999999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.02 E-value=0.02 Score=38.07 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=35.4
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC----CCCccCCCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE----NCPVCGKVM 221 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~----tCPvCr~~v 221 (227)
....|.||.+. ++.+.--.|...||..|+...|.... .||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44689999864 55666677899999999998886543 699997643
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.64 E-value=0.095 Score=36.30 Aligned_cols=34 Identities=29% Similarity=0.722 Sum_probs=24.7
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHH
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~W 207 (227)
.++.|.|| +.|+.+...-.=-|+-+||..|+.+-
T Consensus 14 ~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 56799998 55665443333346999999999995
No 77
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=91.23 E-value=0.065 Score=38.93 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHh
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWME 209 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 209 (227)
...++.|.||.+.-..++.+.-..|...||..||..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 346789999988744334466678899999999987764
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.26 E-value=0.15 Score=31.54 Aligned_cols=44 Identities=23% Similarity=0.579 Sum_probs=31.7
Q ss_pred ccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCC
Q 040167 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGK 219 (227)
Q Consensus 176 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~ 219 (227)
.|.||...-..++.+.--.|...||..|+.+=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998765445566677889999999997544332 25999965
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.96 E-value=0.1 Score=33.88 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGKV 220 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~ 220 (227)
..+..|.||... ++.+.--.|.-.||..|+..-+... =.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999874 4455566788999999999865332 369999753
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.38 E-value=0.1 Score=33.87 Aligned_cols=47 Identities=17% Similarity=0.465 Sum_probs=34.2
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGKVM 221 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~v 221 (227)
..+..|.||.+. ++.+.--.|...||..|+..-|... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 4556666789999999998655432 2599997654
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.34 E-value=0.26 Score=48.54 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccCCCCceecCCC-CccCHHHHHHHHhcCCCCCccCCCCccc
Q 040167 170 PSEDEDVCPTCLEEYTPENPKIVTKCS-HHFHLGCIYEWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 170 ~~~~~~~C~ICle~~~~~~~~~~l~C~-H~FH~~CI~~Wl~~~~tCPvCr~~v~~~ 224 (227)
..-++..|||=++-+.+ +++++-| +.|-+..|.+||..+.+||+=|+++...
T Consensus 887 ~iP~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CSCGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 33466799999999988 8899997 6899999999999899999999887654
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.84 E-value=0.17 Score=35.51 Aligned_cols=52 Identities=19% Similarity=0.554 Sum_probs=37.6
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCCcccCC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGKVMVFDET 226 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~v~~~e~ 226 (227)
+.++.|.||... ++.+..-.|.-.||..|+.+=|... -.||.|+..-..+++
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke~ 78 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEE 78 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCCS
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccchh
Confidence 456789999875 4556667788999999997766432 269999876555443
No 83
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.06 E-value=0.033 Score=36.04 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=35.3
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCCccc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGKVMVFD 224 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~v~~~ 224 (227)
.++.|.||... ++.+.--.|.-.||..|+.+-|... =.||.|...+..+
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 45789999874 4566667789999999998655332 2599997655443
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.95 E-value=0.077 Score=35.75 Aligned_cols=51 Identities=18% Similarity=0.383 Sum_probs=35.5
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhc----CCCCCccCCCCc
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER----SENCPVCGKVMV 222 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCr~~v~ 222 (227)
.+...|.||......+..+..-.|.--||..|+..-+.. .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 344679999887654345555668899999999765432 336999976543
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.74 E-value=0.053 Score=34.54 Aligned_cols=46 Identities=28% Similarity=0.661 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCC----CCCccCC
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSE----NCPVCGK 219 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~----tCPvCr~ 219 (227)
...++.|.||... ++.+.--.|...||..|+.+-|.... .||.|.+
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4466789999875 45566677899999999986554322 4888853
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.75 E-value=0.084 Score=34.40 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=34.9
Q ss_pred CCCCcccccccccccC-CCCceecCCCCccCHHHHHHHHh-----cCCCCCccCCC
Q 040167 171 SEDEDVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWME-----RSENCPVCGKV 220 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~-----~~~tCPvCr~~ 220 (227)
.++...|+||...+.+ +..+..-.|..=||..|+.--.+ ..-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3466789999998864 33445567889999999864322 23479999754
No 87
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.65 E-value=0.47 Score=32.52 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=27.8
Q ss_pred CcccccccccccCCCCceecCC----CCccCHHHHHHHHhc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKC----SHHFHLGCIYEWMER 210 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C----~H~FH~~CI~~Wl~~ 210 (227)
...|.+|.|.+++ ....+| .|.||.-|-+..+++
T Consensus 15 ~l~CtlC~erLEd---tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLED---THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSS---TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhcc---CceeeCCCccCCeeeccccHHHHHh
Confidence 3589999999887 444556 799999999999875
No 88
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.38 E-value=1.5 Score=30.62 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=36.1
Q ss_pred cccccccccccC---CC-CceecCCCCccCHHHHH-HHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTP---EN-PKIVTKCSHHFHLGCIY-EWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~---~~-~~~~l~C~H~FH~~CI~-~Wl~~~~tCPvCr~~v~ 222 (227)
..|.||-+++.. ++ -+..-.|+--.|+.|.. ++-+.++.||.|+....
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 699999998654 22 23445678888999984 44467889999998875
No 89
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.22 E-value=0.77 Score=40.40 Aligned_cols=49 Identities=20% Similarity=0.434 Sum_probs=35.7
Q ss_pred cccccccccccCCCCceecCCCCc--cCHHHHHHHHhcCC--CCCccCCCCcccC
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHH--FHLGCIYEWMERSE--NCPVCGKVMVFDE 225 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~--FH~~CI~~Wl~~~~--tCPvCr~~v~~~e 225 (227)
..|||=+..+. .+.+-..|.|. |-+.=+....++.. .||+|.+.+.+++
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 36887766654 47788899998 77776666555444 6999999887654
No 90
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.78 E-value=0.86 Score=39.97 Aligned_cols=49 Identities=27% Similarity=0.533 Sum_probs=36.9
Q ss_pred cccccccccccCCCCceecCCCCc--cCHHHHHHHHhcCC--CCCccCCCCcccC
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHH--FHLGCIYEWMERSE--NCPVCGKVMVFDE 225 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~--FH~~CI~~Wl~~~~--tCPvCr~~v~~~e 225 (227)
..|||=+..+. .+.+-..|.|. |-+.=+....++.. .||+|.+.+.+++
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 47998777665 47788899999 88777666665544 6999999887654
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.58 E-value=1.9 Score=31.07 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=24.6
Q ss_pred CCcccccccccc------cCCCCceecCCCCccCHHHHH
Q 040167 173 DEDVCPTCLEEY------TPENPKIVTKCSHHFHLGCIY 205 (227)
Q Consensus 173 ~~~~C~ICle~~------~~~~~~~~l~C~H~FH~~CI~ 205 (227)
....|.||+..- ..++.+.-..|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 346899998763 224556677889999999995
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.36 E-value=0.17 Score=33.29 Aligned_cols=46 Identities=24% Similarity=0.579 Sum_probs=33.5
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGKV 220 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~ 220 (227)
..++.|.||.+. ++.+..-.|.-.||..|+.+-|... =.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456799999864 4556667789999999998655332 259999653
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.35 E-value=0.22 Score=34.81 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCCCcccccccccc--cCCCCceecCCCCccCHHHHHHHH--hcCCCCCccCCCC
Q 040167 170 PSEDEDVCPTCLEEY--TPENPKIVTKCSHHFHLGCIYEWM--ERSENCPVCGKVM 221 (227)
Q Consensus 170 ~~~~~~~C~ICle~~--~~~~~~~~l~C~H~FH~~CI~~Wl--~~~~tCPvCr~~v 221 (227)
..+++..|.||...- ..+..+..-.|.-.||..|+..-+ +..=.||.|....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 345678999998763 222345556688899999997533 1223599886543
No 94
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.27 E-value=0.18 Score=34.38 Aligned_cols=45 Identities=20% Similarity=0.561 Sum_probs=30.7
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhc-----CCCCCccCC
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-----SENCPVCGK 219 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCr~ 219 (227)
..|.||...-..+..+.--.|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378999865334455555678999999999854432 225998864
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=81.90 E-value=1.3 Score=33.72 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=35.7
Q ss_pred CCCCCCcccccccccccCCCCceecCCCCccCHHHHHHHHhc-----------CCCCCccCCC
Q 040167 169 SPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-----------SENCPVCGKV 220 (227)
Q Consensus 169 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----------~~tCPvCr~~ 220 (227)
.....++.|.||.+. ++.+-.-.|--.||..||.+=|.+ .=.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 334567899999886 444556678999999999976631 2269999743
No 96
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=81.31 E-value=1 Score=29.41 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCCCcccccccccccCCCCce-ec-CCCCccCHHHHH
Q 040167 171 SEDEDVCPTCLEEYTPENPKI-VT-KCSHHFHLGCIY 205 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~-~l-~C~H~FH~~CI~ 205 (227)
++....|++|...+..+...+ .- .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 456679999999987654433 34 799999999983
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.85 E-value=0.52 Score=34.19 Aligned_cols=45 Identities=22% Similarity=0.600 Sum_probs=31.4
Q ss_pred ccccccccc-ccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCC
Q 040167 175 DVCPTCLEE-YTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGK 219 (227)
Q Consensus 175 ~~C~ICle~-~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~ 219 (227)
..|.||.+. ...++.+.--.|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 368888864 2334455666789999999997655432 26999975
No 98
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=79.81 E-value=0.19 Score=33.52 Aligned_cols=45 Identities=22% Similarity=0.573 Sum_probs=28.2
Q ss_pred ccccccccccCCCCceecCCCCccCHHHHHHHHhc-----CCCCCccCCC
Q 040167 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-----SENCPVCGKV 220 (227)
Q Consensus 176 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCr~~ 220 (227)
.|.||...-..+..+.--.|...||..|+.+=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56677653223334444567899999999854432 2259999753
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=79.12 E-value=0.52 Score=30.62 Aligned_cols=51 Identities=27% Similarity=0.538 Sum_probs=35.3
Q ss_pred CCCCcccccccccccC--CCCceecCCCCccCHHHHHHHHh-------cCCCCCccCCCC
Q 040167 171 SEDEDVCPTCLEEYTP--ENPKIVTKCSHHFHLGCIYEWME-------RSENCPVCGKVM 221 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~-------~~~tCPvCr~~v 221 (227)
..++..|.||...... +..+.--.|.-.||..|+..-|. ..=.||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3466899999987533 44555677899999999886442 223699886543
No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.97 E-value=0.16 Score=35.77 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=34.0
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGK 219 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~ 219 (227)
.++..|.||...-..+..+..-.|...||..|+.+=|... =.||.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3556899999875544556667789999999997544322 24999964
No 101
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.40 E-value=1.7 Score=30.40 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=29.5
Q ss_pred CCcccccccccccCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCCCCc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTK--CS-HHFHLGCIYEWMER----SENCPVCGKVMV 222 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCr~~v~ 222 (227)
+...| ||..... +..+..-. |. .-||..||. |.. +-.||.|+....
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 44567 9988654 44444344 44 579999997 432 236999987544
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.48 E-value=1.6 Score=29.02 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=28.8
Q ss_pred CCcccccccccccCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCCCCc
Q 040167 173 DEDVCPTCLEEYTPENPKIVTK--CS-HHFHLGCIYEWMER----SENCPVCGKVMV 222 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCr~~v~ 222 (227)
+...| ||..... +..+..-. |. .-||..||. |.. +-.||.|+....
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 44567 8988643 33333233 44 589999997 433 236999987554
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.16 E-value=2.7 Score=31.38 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=33.4
Q ss_pred CCCCCCcccccccccccCCCCceecCCCCccCHHHHHHHH------hc-----CCCCCccCC
Q 040167 169 SPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWM------ER-----SENCPVCGK 219 (227)
Q Consensus 169 ~~~~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl------~~-----~~tCPvCr~ 219 (227)
.+...++.|.||.+. ++.+---.|-..||..||.+-+ +. .=.|++|+-
T Consensus 52 d~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 334456789999876 3334455789999999999752 11 137999964
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.47 E-value=2.8 Score=27.83 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=32.7
Q ss_pred CCCCCcccccccccc--cCCCCceecCCCCccCHHHHHHHH--hcCCCCCccCC
Q 040167 170 PSEDEDVCPTCLEEY--TPENPKIVTKCSHHFHLGCIYEWM--ERSENCPVCGK 219 (227)
Q Consensus 170 ~~~~~~~C~ICle~~--~~~~~~~~l~C~H~FH~~CI~~Wl--~~~~tCPvCr~ 219 (227)
....++.|.||.+.- ..+..+.--.|.-.||..|+..-. +..=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345678999998764 233445556788999999997532 11225887753
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.46 E-value=0.86 Score=32.27 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=31.7
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhc---CCCCCccCC
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER---SENCPVCGK 219 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~---~~tCPvCr~ 219 (227)
..| ||-.....+..+..-.|.--||..|+..=++. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 89877666666666778999999998653322 237999974
No 106
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.02 E-value=0.12 Score=37.89 Aligned_cols=49 Identities=14% Similarity=0.405 Sum_probs=32.8
Q ss_pred ccccccccccCCCCceecCCCCccCHHHHHHHHhcC----CCCCccCCCCccc
Q 040167 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS----ENCPVCGKVMVFD 224 (227)
Q Consensus 176 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~----~tCPvCr~~v~~~ 224 (227)
.|.||...-..+..+.--.|...||..|+.+=|... =.||.|+..+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 688887754445556667789999999998544322 2488886654433
No 107
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=71.62 E-value=0.81 Score=37.53 Aligned_cols=45 Identities=22% Similarity=0.571 Sum_probs=28.2
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhc-----CCCCCccCC
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER-----SENCPVCGK 219 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~-----~~tCPvCr~ 219 (227)
..|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888765334555666678999999999854432 125999975
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=70.14 E-value=4.4 Score=27.57 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=29.1
Q ss_pred CCCCCCcccccccccccCCC-CceecCCCCccCHHHHHHH
Q 040167 169 SPSEDEDVCPTCLEEYTPEN-PKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 169 ~~~~~~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~W 207 (227)
....+...|.+|...|..-. ....-.||++|+..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 44455679999999998633 3445679999999997654
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.86 E-value=4 Score=28.24 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCcccccccccccCC-CCceecCCCCccCHHHHHHHH
Q 040167 173 DEDVCPTCLEEYTPE-NPKIVTKCSHHFHLGCIYEWM 208 (227)
Q Consensus 173 ~~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~Wl 208 (227)
+...|.+|...|..- .....-.||++|+..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 446899999999863 344567799999999976654
No 110
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.45 E-value=3.3 Score=27.85 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=31.8
Q ss_pred CCcccccccccccC-CCCceecCCCCccCHHHHHHHHh-----cCCCCCccCCC
Q 040167 173 DEDVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWME-----RSENCPVCGKV 220 (227)
Q Consensus 173 ~~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~-----~~~tCPvCr~~ 220 (227)
+...| ||...+.. +..+..-.|..=||..|+.--.. ..-.||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 33466 99988853 44455566889999999953221 23479999864
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=66.17 E-value=0.56 Score=31.89 Aligned_cols=44 Identities=23% Similarity=0.599 Sum_probs=27.8
Q ss_pred ccccccccccCCCCceecCCCCccCHHHHHHHHhcC-----CCCCccCC
Q 040167 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERS-----ENCPVCGK 219 (227)
Q Consensus 176 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~-----~tCPvCr~ 219 (227)
.|.||...-..+..+.--.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566666553333344445678999999998655321 25999875
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.64 E-value=4.2 Score=27.68 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=28.4
Q ss_pred CCCCCCcccccccccccCC-CCceecCCCCccCHHHHHHH
Q 040167 169 SPSEDEDVCPTCLEEYTPE-NPKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 169 ~~~~~~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~W 207 (227)
....+...|.+|...|..- .....-.||.+|+..|....
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 4445567899999999763 23445679999999996543
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=65.36 E-value=3.9 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=24.0
Q ss_pred ccccccccccc-------CCCCceecCCCCccCHHHHHHH
Q 040167 175 DVCPTCLEEYT-------PENPKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 175 ~~C~ICle~~~-------~~~~~~~l~C~H~FH~~CI~~W 207 (227)
+.|.||+..-. .++.+.-..|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57999987541 1344556778999999999754
No 114
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.15 E-value=4 Score=27.66 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCCCCCcccccccccccCCC-CceecCCCCccCHHHHHHH
Q 040167 169 SPSEDEDVCPTCLEEYTPEN-PKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 169 ~~~~~~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~W 207 (227)
....+...|.+|...|..-. ....-.||.+|+..|....
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 44445578999999998632 3445679999999997654
No 115
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.64 E-value=3.1 Score=26.69 Aligned_cols=43 Identities=21% Similarity=0.516 Sum_probs=30.1
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCcc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvC 217 (227)
..|--|+..+.....-.-..|+++|+.+|=.---+.=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999888642224467899999999943322555689987
No 116
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.73 E-value=4.9 Score=29.61 Aligned_cols=40 Identities=13% Similarity=0.387 Sum_probs=29.0
Q ss_pred cCCCCCCcccccccccccCC-CCceecCCCCccCHHHHHHH
Q 040167 168 YSPSEDEDVCPTCLEEYTPE-NPKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 168 ~~~~~~~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~W 207 (227)
+....+...|.+|...|..- .....-.||++||..|....
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34444557899999999863 23455679999999996554
No 117
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=58.30 E-value=4.7 Score=28.78 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=31.9
Q ss_pred CcccccccccccCCCCce-ec-CCCCccCHHHHHHH------H----hcCCCCCccCCC
Q 040167 174 EDVCPTCLEEYTPENPKI-VT-KCSHHFHLGCIYEW------M----ERSENCPVCGKV 220 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~-~l-~C~H~FH~~CI~~W------l----~~~~tCPvCr~~ 220 (227)
...|+||...|.++...+ .- .|.-=||..|+.-= | ..+-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 358999999987644333 33 68899999998421 1 023479999754
No 118
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.44 E-value=1 Score=32.41 Aligned_cols=45 Identities=20% Similarity=0.490 Sum_probs=30.1
Q ss_pred ccccccccccCCCCceecCCCCccCHHHHHHHHhc----CCCCCccCCC
Q 040167 176 VCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMER----SENCPVCGKV 220 (227)
Q Consensus 176 ~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~----~~tCPvCr~~ 220 (227)
.|.||...-.....+..-.|...||..|+.+=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765443445556678999999999864432 2258888653
No 119
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=56.37 E-value=3.1 Score=25.61 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=28.4
Q ss_pred ccccccccccCCCCc-eec-CCCCccCHHHHHHHH----hcCCCCCccC
Q 040167 176 VCPTCLEEYTPENPK-IVT-KCSHHFHLGCIYEWM----ERSENCPVCG 218 (227)
Q Consensus 176 ~C~ICle~~~~~~~~-~~l-~C~H~FH~~CI~~Wl----~~~~tCPvCr 218 (227)
.|.||...+.++... .-- .|.-=||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999988654433 334 588889999975221 2456799885
No 120
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=55.21 E-value=3 Score=23.66 Aligned_cols=13 Identities=23% Similarity=0.818 Sum_probs=9.9
Q ss_pred CcccccccccccC
Q 040167 174 EDVCPTCLEEYTP 186 (227)
Q Consensus 174 ~~~C~ICle~~~~ 186 (227)
...||||+..+..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 4689999888764
No 121
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=54.16 E-value=6.9 Score=30.21 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCCCCCcccccccccccCCCCceec--CCCCccCHHHHHHHHhc
Q 040167 169 SPSEDEDVCPTCLEEYTPENPKIVT--KCSHHFHLGCIYEWMER 210 (227)
Q Consensus 169 ~~~~~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~~ 210 (227)
.....+..|.||-+. ++.+..- .|...||..||..++..
T Consensus 74 DeDG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 444556789999875 2223333 58899999999999854
No 122
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.78 E-value=6.1 Score=30.27 Aligned_cols=32 Identities=25% Similarity=0.599 Sum_probs=26.3
Q ss_pred CCcccccccccccC--CCCceecCCCCccCHHHH
Q 040167 173 DEDVCPTCLEEYTP--ENPKIVTKCSHHFHLGCI 204 (227)
Q Consensus 173 ~~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI 204 (227)
.+..|.||+..|.. +.......|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 46799999998753 556777889999999996
No 123
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=53.45 E-value=1.4 Score=28.28 Aligned_cols=43 Identities=23% Similarity=0.573 Sum_probs=25.6
Q ss_pred CCcccccccccccCCCCceecC--CC-CccCHHHHHHHHhcC----CCCCccCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVTK--CS-HHFHLGCIYEWMERS----ENCPVCGK 219 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~~----~tCPvCr~ 219 (227)
+...| ||..... +..+.--. |. .-||..|+. |... -.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 9988643 33222233 43 579999997 4332 35888864
No 124
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=53.41 E-value=5.2 Score=28.78 Aligned_cols=42 Identities=24% Similarity=0.603 Sum_probs=26.6
Q ss_pred CCCcccccccccccCCCCceec--CCCCccCHHHHHHHHhcCC----CCCccC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVT--KCSHHFHLGCIYEWMERSE----NCPVCG 218 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~~~~----tCPvCr 218 (227)
..++.|.+|.+. ++.+.-- .|...||..|+. |.... .||.|.
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 456789999842 3323333 487899999997 54322 477553
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.16 E-value=8.9 Score=25.24 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=24.6
Q ss_pred cccccccccccCC-CCceecCCCCccCHHHHHH
Q 040167 175 DVCPTCLEEYTPE-NPKIVTKCSHHFHLGCIYE 206 (227)
Q Consensus 175 ~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~ 206 (227)
..|.+|...|..- ....--.||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 5899999999863 2344567999999999654
No 126
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=52.00 E-value=4.9 Score=30.06 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=25.9
Q ss_pred CCCccccccccccc-C-CCCceecCCCCccCHHHHH
Q 040167 172 EDEDVCPTCLEEYT-P-ENPKIVTKCSHHFHLGCIY 205 (227)
Q Consensus 172 ~~~~~C~ICle~~~-~-~~~~~~l~C~H~FH~~CI~ 205 (227)
..+..|.||+..|. . +.......|.|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35679999999994 2 3355678899999998843
No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.32 E-value=6.6 Score=27.05 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCCcccccccccccCCC-CceecCCCCccCHHHHHHH
Q 040167 172 EDEDVCPTCLEEYTPEN-PKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~W 207 (227)
.+...|.+|...|..-. ....-.||++|+..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 44568999999998632 2344568999999886543
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.71 E-value=1.7 Score=27.77 Aligned_cols=43 Identities=21% Similarity=0.540 Sum_probs=26.5
Q ss_pred CCcccccccccccCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVTK--CS-HHFHLGCIYEWMER----SENCPVCGK 219 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCr~ 219 (227)
+...| ||..... +..+.--. |. .-||..|+. |.. +-.||.|++
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34556 9988643 33333333 54 689999997 433 236998864
No 129
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.04 E-value=13 Score=32.73 Aligned_cols=47 Identities=17% Similarity=0.428 Sum_probs=33.5
Q ss_pred CCCCCcccccccccccCCCCceec--CCCCccCHHHHHHHHhcC----------CCCCccCC
Q 040167 170 PSEDEDVCPTCLEEYTPENPKIVT--KCSHHFHLGCIYEWMERS----------ENCPVCGK 219 (227)
Q Consensus 170 ~~~~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~~~----------~tCPvCr~ 219 (227)
....+..|.||-+. ++.+..- .|...||..||..++.+. =.|=+|.-
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34456789999875 3345545 799999999999999432 26877753
No 130
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=49.50 E-value=9.7 Score=24.91 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCCCcccccccccccCCCCceecCC-CCccCHHHHHHH
Q 040167 171 SEDEDVCPTCLEEYTPENPKIVTKC-SHHFHLGCIYEW 207 (227)
Q Consensus 171 ~~~~~~C~ICle~~~~~~~~~~l~C-~H~FH~~CI~~W 207 (227)
.++..-|.||.++-. ++.+-| +-+||..|..+-
T Consensus 5 ~ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCCC----EEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCCe----EEecCCCCceehHHHHHHH
Confidence 345567999999833 788889 889999996553
No 131
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=48.99 E-value=4.5 Score=26.70 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=10.7
Q ss_pred HHHhcCCCCCccCCCCccc
Q 040167 206 EWMERSENCPVCGKVMVFD 224 (227)
Q Consensus 206 ~Wl~~~~tCPvCr~~v~~~ 224 (227)
+||..--.||+|+.++.++
T Consensus 3 ~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLS 21 (69)
T ss_dssp CCGGGTCCCTTTCCCCEEC
T ss_pred hHHHhheeCCCCCCcCeEe
Confidence 4454455666666665543
No 132
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.82 E-value=15 Score=24.13 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=31.1
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHH------H---hcCCCCCccCC
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEW------M---ERSENCPVCGK 219 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~W------l---~~~~tCPvCr~ 219 (227)
...| ||...+..+..+..-.|..=||..|+.-- | ...-.||.|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3467 89988765455555678899999998421 1 23567999965
No 133
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=48.28 E-value=2.7 Score=32.43 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCCcccccccccccC-CCCceecCCCCccCHHHHHHHH-----hcCCCCCccCC
Q 040167 172 EDEDVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWM-----ERSENCPVCGK 219 (227)
Q Consensus 172 ~~~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl-----~~~~tCPvCr~ 219 (227)
++...| ||...+.. +..+..-.|.--||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 345678 99988753 3345556788999999995221 12347999974
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.11 E-value=7.7 Score=27.50 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=10.2
Q ss_pred cCHHHHHHHHh
Q 040167 199 FHLGCIYEWME 209 (227)
Q Consensus 199 FH~~CI~~Wl~ 209 (227)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999994
No 135
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.81 E-value=1.9 Score=31.79 Aligned_cols=45 Identities=18% Similarity=0.496 Sum_probs=29.0
Q ss_pred CCcccccccccccC-CCCceecCCCCccCHHHHHHHHhcCCCCCcc
Q 040167 173 DEDVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVC 217 (227)
Q Consensus 173 ~~~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvC 217 (227)
+...|.+|...|.. ......-.||.+||..|....+.....|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 44689999999986 2344557799999999976655444445544
No 136
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=47.74 E-value=7.9 Score=27.40 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=10.3
Q ss_pred cCHHHHHHHHh
Q 040167 199 FHLGCIYEWME 209 (227)
Q Consensus 199 FH~~CI~~Wl~ 209 (227)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 137
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.30 E-value=2.9 Score=28.83 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=33.2
Q ss_pred CCcccccccccccC--CCCceecCCCCccCHHHHHHHHhc--------CCCCCccCCCC
Q 040167 173 DEDVCPTCLEEYTP--ENPKIVTKCSHHFHLGCIYEWMER--------SENCPVCGKVM 221 (227)
Q Consensus 173 ~~~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~~--------~~tCPvCr~~v 221 (227)
.+..|.||...-.. +..+..-.|...||..|+.+-|.. .=.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 34689999976432 334455668999999999875532 23699886543
No 138
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=46.35 E-value=0.9 Score=29.85 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=25.7
Q ss_pred cccccccccccCCCCceec--CCCCccCHHHHHHH---Hh-----cCCCCCccCC
Q 040167 175 DVCPTCLEEYTPENPKIVT--KCSHHFHLGCIYEW---ME-----RSENCPVCGK 219 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~W---l~-----~~~tCPvCr~ 219 (227)
..| ||......+..+..- .|.-=||..|+.-- .+ .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 897665544333222 47788999998310 01 1346999963
No 139
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.36 E-value=3.8 Score=22.17 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=7.8
Q ss_pred CCCCccCCCCc
Q 040167 212 ENCPVCGKVMV 222 (227)
Q Consensus 212 ~tCPvCr~~v~ 222 (227)
.+||+|+..++
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46888887654
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.27 E-value=10 Score=30.71 Aligned_cols=35 Identities=17% Similarity=0.448 Sum_probs=26.9
Q ss_pred CCcccccccccccCCC-CceecCCCCccCHHHHHHH
Q 040167 173 DEDVCPTCLEEYTPEN-PKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~-~~~~l~C~H~FH~~CI~~W 207 (227)
+...|.+|...|..-. ....-.||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3469999999998632 3455679999999997654
No 141
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=43.82 E-value=5.2 Score=21.11 Aligned_cols=10 Identities=50% Similarity=1.308 Sum_probs=7.0
Q ss_pred CCCccCCCCc
Q 040167 213 NCPVCGKVMV 222 (227)
Q Consensus 213 tCPvCr~~v~ 222 (227)
.||+|.+.|+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 5888877654
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.77 E-value=10 Score=30.40 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=26.1
Q ss_pred CcccccccccccCC-CCceecCCCCccCHHHHHHH
Q 040167 174 EDVCPTCLEEYTPE-NPKIVTKCSHHFHLGCIYEW 207 (227)
Q Consensus 174 ~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~W 207 (227)
...|.+|...|..- .....-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999999863 34455679999999996543
No 143
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.22 E-value=24 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.625 Sum_probs=25.0
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
...|.-|-+.+..++.+.. =+..||..| ..|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 3578888887765443332 367788776 35777776653
No 144
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.82 E-value=6.7 Score=27.74 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=24.8
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
..||+|..+++... ++.+|..|=.. +....-||-|.++|..
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHHH
Confidence 58999998865422 12223333221 3556689999988753
No 145
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.14 E-value=7 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=18.5
Q ss_pred ceecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 190 KIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 190 ~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
.....||+.|. .=+.....||.|+.....
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 44567899981 112334689999986543
No 146
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.75 E-value=5.6 Score=27.12 Aligned_cols=33 Identities=24% Similarity=0.650 Sum_probs=20.8
Q ss_pred cccccccccC--CCC-ceecCCCCccCHHHHHHHHh
Q 040167 177 CPTCLEEYTP--ENP-KIVTKCSHHFHLGCIYEWME 209 (227)
Q Consensus 177 C~ICle~~~~--~~~-~~~l~C~H~FH~~CI~~Wl~ 209 (227)
||-|-..+.. +.. +....|++.||..|-..|=+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhh
Confidence 7766543322 223 33345999999999988833
No 147
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=40.78 E-value=4.5 Score=26.60 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=8.9
Q ss_pred HHHhcCCCCCccCCCCcc
Q 040167 206 EWMERSENCPVCGKVMVF 223 (227)
Q Consensus 206 ~Wl~~~~tCPvCr~~v~~ 223 (227)
+||..--.||+|+.++.+
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 344444455555555544
No 148
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=39.95 E-value=12 Score=20.35 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=17.9
Q ss_pred cccccccccccCCCCceecCCCCccCHHH
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGC 203 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~C 203 (227)
+.|+.|-...-..+.+ ..=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred CcCCccCCEEecceeE--EECCeEecccC
Confidence 5799998776543222 23478889887
No 149
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=38.74 E-value=11 Score=24.59 Aligned_cols=47 Identities=17% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCcccccccccccCCCCceecCCCCccCHHHHHHHHh---cCCCCCccCC
Q 040167 172 EDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWME---RSENCPVCGK 219 (227)
Q Consensus 172 ~~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~---~~~tCPvCr~ 219 (227)
.+...| ||...+..+..+..-.|..=||..|+.---. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 9988776434555566889999999864221 2346888864
No 150
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.40 E-value=19 Score=23.51 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=24.8
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCC
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVM 221 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v 221 (227)
...|..|-+.+.. . .+..-+..||..|. +|-.|++.|
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCC
Confidence 3578888887764 2 34445778888773 577777665
No 151
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=37.92 E-value=3.5 Score=26.51 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=26.0
Q ss_pred CcccccccccccCCCCceecC--CC-CccCHHHHHHHHhc----CCCCCccCCC
Q 040167 174 EDVCPTCLEEYTPENPKIVTK--CS-HHFHLGCIYEWMER----SENCPVCGKV 220 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~--C~-H~FH~~CI~~Wl~~----~~tCPvCr~~ 220 (227)
...| ||..... +..+.--. |. .-||..|+. |.. +-.||.|+..
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 3456 9988643 33333333 44 789999997 322 2359998653
No 152
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=37.51 E-value=3.1 Score=26.28 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=6.4
Q ss_pred CCCCCccCCCCcc
Q 040167 211 SENCPVCGKVMVF 223 (227)
Q Consensus 211 ~~tCPvCr~~v~~ 223 (227)
--.||+|+.++.+
T Consensus 10 iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 10 ILACPACHAPLEE 22 (56)
T ss_dssp SCCCSSSCSCEEE
T ss_pred heeCCCCCCccee
Confidence 3355555555443
No 153
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.74 E-value=15 Score=23.94 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=14.9
Q ss_pred HhcCCCCCccCCCCcccCC
Q 040167 208 MERSENCPVCGKVMVFDET 226 (227)
Q Consensus 208 l~~~~tCPvCr~~v~~~e~ 226 (227)
|+...-||.|++-..+.|+
T Consensus 46 LElkKycp~c~kHtlhkE~ 64 (66)
T 3bbo_3 46 LELRKFCPYCYKHTIHGEI 64 (66)
T ss_dssp SCCCCCCCSSSSCCCCCCC
T ss_pred eEEEccCCCCCCeeeEEee
Confidence 3556789999998888875
No 154
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=36.30 E-value=9.8 Score=25.55 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=16.1
Q ss_pred CCCCccCHHHHHHHHhcCCCC
Q 040167 194 KCSHHFHLGCIYEWMERSENC 214 (227)
Q Consensus 194 ~C~H~FH~~CI~~Wl~~~~tC 214 (227)
.|++.|+..|...|=. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6999999999999865 555
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.45 E-value=29 Score=22.83 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=23.5
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVM 221 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v 221 (227)
....|..|-+.+...+.+. .=+..||..| ..|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L 52 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATL 52 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCc
Confidence 3457888888775433332 3466788777 2456665554
No 156
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.41 E-value=19 Score=23.21 Aligned_cols=38 Identities=21% Similarity=0.515 Sum_probs=21.5
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..|..|-+.+..++.+ ..-+..||..| ..|-.|++.|.
T Consensus 10 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKV--SSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CBCTTTCCBCCTTTEE--EETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCcCCCCEeECCeEE--EECCeEeeCCC--------CCCCCCCCccC
Confidence 4677777766643322 23356666665 24666666554
No 157
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.26 E-value=28 Score=22.03 Aligned_cols=39 Identities=21% Similarity=0.548 Sum_probs=19.5
Q ss_pred cccccccccccC-CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCC
Q 040167 175 DVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVM 221 (227)
Q Consensus 175 ~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v 221 (227)
..|.-|-+.+.. +...++..-+..||..|. .|-.|++.|
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcC
Confidence 456666666553 011222234566666552 455565554
No 158
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.93 E-value=10 Score=28.82 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=16.8
Q ss_pred eecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 191 IVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 191 ~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
+...|||.|-.. .....||.|+.++..
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCccee
Confidence 445677777432 223479999987644
No 159
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.82 E-value=18 Score=22.89 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=4.4
Q ss_pred cccccccccc
Q 040167 176 VCPTCLEEYT 185 (227)
Q Consensus 176 ~C~ICle~~~ 185 (227)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8x_A 7 GCHQCGEFII 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCCEec
Confidence 4444444443
No 160
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.81 E-value=9.2 Score=23.12 Aligned_cols=31 Identities=35% Similarity=0.795 Sum_probs=18.0
Q ss_pred cccccccccccC--CCCceecCCCCccCHHHHHHHHhcCC--CCCccCCC
Q 040167 175 DVCPTCLEEYTP--ENPKIVTKCSHHFHLGCIYEWMERSE--NCPVCGKV 220 (227)
Q Consensus 175 ~~C~ICle~~~~--~~~~~~l~C~H~FH~~CI~~Wl~~~~--tCPvCr~~ 220 (227)
..|.||--.|.. +++ ..|-+.-. .||+|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~---------------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDN---------------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTT---------------CCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCC---------------cchhhCCCCCcCcCCCCc
Confidence 467777766654 222 23433333 79999764
No 161
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.34 E-value=48 Score=21.99 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=23.4
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
...|..|-+.+.. ..+..-+..||..| ..|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CCCcccCCCEecc---cEEEECCceECccC--------CEecCCCCCCC
Confidence 3578888777664 22334567777776 24667766654
No 162
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=31.72 E-value=31 Score=22.84 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=31.0
Q ss_pred CCcccccccccccCCCCceec--CCCCccCHHHHHHHHh---------cCCCCCccCCCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVT--KCSHHFHLGCIYEWME---------RSENCPVCGKVM 221 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l--~C~H~FH~~CI~~Wl~---------~~~tCPvCr~~v 221 (227)
+...| ||......+..+..- .|..=||..|+.---+ .+-.||.|+...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34567 898874444444444 7889999999853211 244699997543
No 163
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=31.40 E-value=10 Score=33.29 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCCcccccccccccCC-CCceecCCCCccCHHHHHHHHhc-------CCCCCccCCCC
Q 040167 170 PSEDEDVCPTCLEEYTPE-NPKIVTKCSHHFHLGCIYEWMER-------SENCPVCGKVM 221 (227)
Q Consensus 170 ~~~~~~~C~ICle~~~~~-~~~~~l~C~H~FH~~CI~~Wl~~-------~~tCPvCr~~v 221 (227)
...+...|.+|...|..- .....-.||++||..|-..++.. ...|-.|-..+
T Consensus 371 ~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 371 PVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ------------------------------------------------------------
T ss_pred CcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 334567899999999763 23455679999999999776521 23577775544
No 164
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=31.30 E-value=11 Score=24.40 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=27.6
Q ss_pred CCcccccccccccCCCCceecCCCCccCH-HHHHHHHhcCCCCCccCCCC
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHL-GCIYEWMERSENCPVCGKVM 221 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~-~CI~~Wl~~~~tCPvCr~~v 221 (227)
+-..|..|...+..+. -...=+..|+. .|..+-+ ...|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 4568888888776532 12234567777 5765533 55688886543
No 165
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=31.22 E-value=4.7 Score=26.53 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=4.2
Q ss_pred ccccccccc
Q 040167 175 DVCPTCLEE 183 (227)
Q Consensus 175 ~~C~ICle~ 183 (227)
..||+|...
T Consensus 9 L~CP~ck~~ 17 (68)
T 2jr6_A 9 LVCPVTKGR 17 (68)
T ss_dssp CBCSSSCCB
T ss_pred eECCCCCCc
Confidence 345555443
No 166
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.69 E-value=47 Score=22.07 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=20.3
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..|..|-+.+.. ..+..-+..||..| ..|-.|++.|.
T Consensus 26 ~~C~~C~~~I~~---~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 26 PMCAHCNQVIRG---PFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CBBSSSCCBCCS---CEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCccCCCEecc---eEEEECCccccccC--------CccCCCCCCCC
Confidence 467777766642 22233466666665 24566665543
No 167
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.65 E-value=47 Score=21.57 Aligned_cols=36 Identities=25% Similarity=0.559 Sum_probs=17.8
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCC
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVM 221 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v 221 (227)
..|.-|-+.+.. .. +..-+..||..| .+|-.|++.|
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 2cor_A 16 YICQKCHAIIDE-QP--LIFKNDPYHPDH--------FNCANCGKEL 51 (79)
T ss_dssp CBCTTTCCBCCS-CC--CCCSSSCCCTTT--------SBCSSSCCBC
T ss_pred CCCccCCCEecc-eE--EEECcceeCCCC--------CEeCCCCCcc
Confidence 456666665552 21 222355556555 2455555544
No 168
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.01 E-value=45 Score=20.95 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=14.7
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHh
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWME 209 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~ 209 (227)
..|..|...+.. . .....=+..||..|..+.++
T Consensus 34 F~C~~C~~~L~~-~-~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRG-Q-HFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTT-S-CEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCc-C-cCEeeCCeEECHHHHHHHHc
Confidence 455555555431 1 11222345555555555443
No 169
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.89 E-value=4.6 Score=26.60 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=4.3
Q ss_pred CCCccCCCCc
Q 040167 213 NCPVCGKVMV 222 (227)
Q Consensus 213 tCPvCr~~v~ 222 (227)
.||+|+.++.
T Consensus 10 ~CP~ck~~L~ 19 (68)
T 2hf1_A 10 VCPLCKGPLV 19 (68)
T ss_dssp BCTTTCCBCE
T ss_pred ECCCCCCcCe
Confidence 3444444433
No 170
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.52 E-value=63 Score=20.49 Aligned_cols=40 Identities=20% Similarity=0.502 Sum_probs=23.4
Q ss_pred CcccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 174 EDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 174 ~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
...|.-|-+.+...+.+ +..=+..||..| .+|-.|++.+.
T Consensus 11 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKI-VNSNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTC-EEETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCchhcCCccCCCceE-EEeCccEecccc--------CeECCCCCCCC
Confidence 35788888777643322 223466777766 24666766654
No 171
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.46 E-value=4.9 Score=26.64 Aligned_cols=11 Identities=36% Similarity=0.751 Sum_probs=5.5
Q ss_pred Ccccccccccc
Q 040167 174 EDVCPTCLEEY 184 (227)
Q Consensus 174 ~~~C~ICle~~ 184 (227)
-..||+|...+
T Consensus 8 iL~CP~ck~~L 18 (70)
T 2js4_A 8 ILVCPVCKGRL 18 (70)
T ss_dssp CCBCTTTCCBE
T ss_pred heECCCCCCcC
Confidence 34555555543
No 172
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=27.44 E-value=11 Score=23.76 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=14.4
Q ss_pred HhcCCCCCccCCCCcccCC
Q 040167 208 MERSENCPVCGKVMVFDET 226 (227)
Q Consensus 208 l~~~~tCPvCr~~v~~~e~ 226 (227)
|+...-||+|++-+.+.|+
T Consensus 35 LelkKycp~~~kHtlhkE~ 53 (55)
T 2zjr_1 35 LELKKYDPVAKKHVVFREK 53 (55)
T ss_pred eEEEccCCCCCCEEeEEEe
Confidence 3445679999998888764
No 173
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.36 E-value=53 Score=20.95 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=4.5
Q ss_pred cccccccccc
Q 040167 176 VCPTCLEEYT 185 (227)
Q Consensus 176 ~C~ICle~~~ 185 (227)
.|+-|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (73)
T 1wig_A 7 GCDSCEKYIT 16 (73)
T ss_dssp SCSSSCCCCS
T ss_pred CcccCCCEec
Confidence 4444444443
No 174
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.95 E-value=49 Score=21.39 Aligned_cols=39 Identities=21% Similarity=0.514 Sum_probs=21.3
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..|..|-+.+..++.. +..=+..||..| .+|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccC
Confidence 4677777766643322 223356666655 24666666553
No 175
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=25.79 E-value=12 Score=23.16 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.0
Q ss_pred HhcCCCCCccCCCCcccCC
Q 040167 208 MERSENCPVCGKVMVFDET 226 (227)
Q Consensus 208 l~~~~tCPvCr~~v~~~e~ 226 (227)
|+...-||+|++-..+.|+
T Consensus 33 LelkKycp~~~khtlhkE~ 51 (52)
T 2ftc_P 33 LTLLHYDPVVKQRVLFVEK 51 (52)
T ss_pred eEEEccCCCCCceEeEEec
Confidence 4556789999998888775
No 176
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.75 E-value=25 Score=23.92 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=20.7
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..||+|..++..+.. +.++..|=.. +....-||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~-~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKD-FSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCE-EEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-------ceECcccccc-CCCcccCcchhhHHH
Confidence 468888877654222 2223333221 233346788877764
No 177
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.68 E-value=39 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=18.9
Q ss_pred CCcccccccccccCCCCceecCCCCccCHHHHHHHH
Q 040167 173 DEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWM 208 (227)
Q Consensus 173 ~~~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl 208 (227)
+-..|..|-..+..+... ...=+..||..|..+.+
T Consensus 35 ~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHh
Confidence 445677776665433222 22235666777766665
No 178
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.56 E-value=45 Score=23.75 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=11.0
Q ss_pred CCccCHHHHHHHHhcCCCCCccCCCC
Q 040167 196 SHHFHLGCIYEWMERSENCPVCGKVM 221 (227)
Q Consensus 196 ~H~FH~~CI~~Wl~~~~tCPvCr~~v 221 (227)
+..||..|..+-+.....|..|.+.|
T Consensus 51 g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 51 GRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp TEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred CEEeecCchhhhCCCccChhhcCCcc
Confidence 34455555444332222455554444
No 179
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.39 E-value=18 Score=22.96 Aligned_cols=37 Identities=22% Similarity=0.605 Sum_probs=26.0
Q ss_pred cccccccccccCC---CCceecC--CCCccCHHHHHHHHhcC
Q 040167 175 DVCPTCLEEYTPE---NPKIVTK--CSHHFHLGCIYEWMERS 211 (227)
Q Consensus 175 ~~C~ICle~~~~~---~~~~~l~--C~H~FH~~CI~~Wl~~~ 211 (227)
..||-|.-.++.. +.+.... |++.|+-.|..+|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4788887776652 2333334 89999999999997554
No 180
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.05 E-value=50 Score=23.45 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=33.2
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCcc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVF 223 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~~ 223 (227)
..|..|...+.+....-...=+..||..|..+-+..+..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4788887776521111223446789999988877666689999887753
No 181
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.91 E-value=44 Score=21.66 Aligned_cols=37 Identities=22% Similarity=0.529 Sum_probs=22.5
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..|..|-+.+.. . ++..-+..||..|. +|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~-~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG-E--VVSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS-C--CEEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEecc-c--eEEECCceeCccCC--------ccccCCCCCC
Confidence 378888877763 2 23334677777662 4666666554
No 182
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.82 E-value=55 Score=20.84 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=31.8
Q ss_pred CCCccccccccc-ccCCCCceecCCCCccCHHHHHHHHhcCC----CCCccCC
Q 040167 172 EDEDVCPTCLEE-YTPENPKIVTKCSHHFHLGCIYEWMERSE----NCPVCGK 219 (227)
Q Consensus 172 ~~~~~C~ICle~-~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~----tCPvCr~ 219 (227)
.+..+|.||+.. |.++--....-|.-.|+..|-..|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 456799999965 56666666777888888877665543332 3666654
No 183
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=23.39 E-value=16 Score=24.88 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=15.0
Q ss_pred HhcCCCCCccCCCCcccCC
Q 040167 208 MERSENCPVCGKVMVFDET 226 (227)
Q Consensus 208 l~~~~tCPvCr~~v~~~e~ 226 (227)
|+.+.-||+|++-+.+.|+
T Consensus 62 LELkKYcP~crKHtlHkEt 80 (82)
T 1nkw_1 62 LELKKYDPVAKKHVVFREK 80 (82)
T ss_pred eEEEccCCCCCCeeeEEee
Confidence 4556789999998888775
No 184
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.37 E-value=54 Score=20.51 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=12.8
Q ss_pred cccccccccccCCCCceecCCCCccCHHH
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGC 203 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~C 203 (227)
..|..|-+.+..... ++..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C 33 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHC 33 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTT
T ss_pred CCCccCCCccccCcc-EEEECccccCccc
Confidence 356666555553211 2222355555554
No 185
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.04 E-value=63 Score=20.80 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=5.2
Q ss_pred CCccCHHHHHHH
Q 040167 196 SHHFHLGCIYEW 207 (227)
Q Consensus 196 ~H~FH~~CI~~W 207 (227)
+..||..|..+.
T Consensus 63 ~~~~C~~c~~~~ 74 (81)
T 1x6a_A 63 ATLYCGKCHNEV 74 (81)
T ss_dssp SCEEEHHHHHHH
T ss_pred CEEECHHHHHHH
Confidence 344444444433
No 186
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.78 E-value=45 Score=21.34 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=23.2
Q ss_pred cccccccccccC-CCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTP-ENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~-~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..|..|-+.+.. +....+..-+..||..|. .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 468888777664 111223345677777772 4666666553
No 187
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.75 E-value=84 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.496 Sum_probs=24.4
Q ss_pred CCCcccccccccccC--CCCceecCCCCccCHHH
Q 040167 172 EDEDVCPTCLEEYTP--ENPKIVTKCSHHFHLGC 203 (227)
Q Consensus 172 ~~~~~C~ICle~~~~--~~~~~~l~C~H~FH~~C 203 (227)
..+..|..|.+.|.. ....+.-.|.|..+..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 356799999999875 33455677899888887
No 188
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.96 E-value=35 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=14.7
Q ss_pred ecCCCCccCHHHHHHHHhcCC-CCCccCCC
Q 040167 192 VTKCSHHFHLGCIYEWMERSE-NCPVCGKV 220 (227)
Q Consensus 192 ~l~C~H~FH~~CI~~Wl~~~~-tCPvCr~~ 220 (227)
...|||.|-. .+... .||.|+..
T Consensus 76 C~~CG~~~e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 76 CKDCSHVFKP------NALDYGVCEKCHSK 99 (119)
T ss_dssp CSSSSCEECS------CCSTTCCCSSSSSC
T ss_pred cCCCCCEEeC------CCCCCCcCccccCC
Confidence 4556776655 13456 79999775
No 189
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.65 E-value=48 Score=20.76 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=11.9
Q ss_pred ccccccccccCCCCceecCCCCccCHHH
Q 040167 176 VCPTCLEEYTPENPKIVTKCSHHFHLGC 203 (227)
Q Consensus 176 ~C~ICle~~~~~~~~~~l~C~H~FH~~C 203 (227)
.|..|-+.+...+.. +..=+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1x4k_A 7 GCQECKKTIMPGTRK-MEYKGSSWHETC 33 (72)
T ss_dssp CBSSSCCCCCSSSCE-EEETTEEEETTT
T ss_pred CCccCCCcccCCceE-EEECcCeecccC
Confidence 566665555532211 122344555544
No 190
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.77 E-value=49 Score=20.60 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=5.1
Q ss_pred cccccccccc
Q 040167 176 VCPTCLEEYT 185 (227)
Q Consensus 176 ~C~ICle~~~ 185 (227)
.|.-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 4555555543
No 191
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.52 E-value=23 Score=24.92 Aligned_cols=9 Identities=56% Similarity=1.663 Sum_probs=4.6
Q ss_pred CCCccCCCC
Q 040167 213 NCPVCGKVM 221 (227)
Q Consensus 213 tCPvCr~~v 221 (227)
.||+|++++
T Consensus 49 ~CPvCgs~l 57 (112)
T 1l8d_A 49 KCPVCGREL 57 (112)
T ss_dssp ECTTTCCEE
T ss_pred CCCCCCCcC
Confidence 455555443
No 192
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.49 E-value=54 Score=20.19 Aligned_cols=37 Identities=19% Similarity=0.519 Sum_probs=19.1
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..|+.|-+.+. +. .+..=+..||..| ..|-.|++.+.
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCC
Confidence 35666666655 22 2333455666655 24556655543
No 193
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.12 E-value=30 Score=21.65 Aligned_cols=39 Identities=21% Similarity=0.555 Sum_probs=23.7
Q ss_pred cccccccccccCCCCceecCCCCccCHHHHHHHHhcCCCCCccCCCCc
Q 040167 175 DVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMV 222 (227)
Q Consensus 175 ~~C~ICle~~~~~~~~~~l~C~H~FH~~CI~~Wl~~~~tCPvCr~~v~ 222 (227)
..|.-|-+.+...+.+ +..=+..||..|. .|-.|++.+.
T Consensus 12 ~~C~~C~~~i~~~e~~-~~~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKI-VNSNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp CBCTTTCCBCCTTCEE-EEETTEEEETTTS--------SCTTTCCCCG
T ss_pred ccchhcCccccCCceE-EEeCcCeeCcCCC--------cccCCCCCCC
Confidence 5788888777643322 2234666777664 5667766654
Done!