Your job contains 1 sequence.
>040168
MATNTSTEDQRKRTMEALERRFATAKAEALQQVKHGKKRSLNDDEMETPATNSSNIASSP
HVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRG
STVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRS
RKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLH
GANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLL
GDKLTSRNL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040168
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2041021 - symbol:POP4 "similar to yeast POP4" ... 685 1.9e-67 1
UNIPROTKB|Q2KIB9 - symbol:POP4 "Ribonuclease P protein su... 219 4.6e-18 1
UNIPROTKB|Q58DW8 - symbol:POP4 "POP4 (Processing of , S. ... 216 9.5e-18 1
RGD|1305955 - symbol:Pop4 "processing of precursor 4, rib... 214 1.6e-17 1
UNIPROTKB|F1NGN1 - symbol:POP4 "Uncharacterized protein" ... 213 2.0e-17 1
UNIPROTKB|F1RNY8 - symbol:POP4 "Uncharacterized protein" ... 212 2.5e-17 1
UNIPROTKB|F1Q2R6 - symbol:POP4 "Uncharacterized protein" ... 211 3.2e-17 1
MGI|MGI:1913411 - symbol:Pop4 "processing of precursor 4,... 209 5.3e-17 1
ZFIN|ZDB-GENE-050522-505 - symbol:pop4 "processing of pre... 209 5.3e-17 1
UNIPROTKB|O95707 - symbol:POP4 "Ribonuclease P protein su... 208 6.7e-17 1
WB|WBGene00007603 - symbol:C15C6.4 species:6239 "Caenorha... 185 3.2e-14 1
UNIPROTKB|A8MYC1 - symbol:POP4 "cDNA FLJ57473, highly sim... 183 5.4e-14 1
UNIPROTKB|K7ERD7 - symbol:POP4 "Ribonuclease P protein su... 180 1.2e-13 1
FB|FBgn0035831 - symbol:CG8038 species:7227 "Drosophila m... 173 7.6e-13 1
DICTYBASE|DDB_G0288543 - symbol:pop4 "RNase MRP protein s... 177 3.2e-12 1
POMBASE|SPBC1703.01c - symbol:SPBC1703.01c "RNase P and R... 151 2.8e-09 1
SGD|S000000461 - symbol:POP4 "Subunit of both RNase MRP a... 139 4.5e-07 1
>TAIR|locus:2041021 [details] [associations]
symbol:POP4 "similar to yeast POP4" species:3702
"Arabidopsis thaliana" [GO:0000172 "ribonuclease MRP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004526
"ribonuclease P activity" evidence=ISS] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005655 "nucleolar ribonuclease P complex" evidence=IEA]
[GO:0030677 "ribonuclease P complex" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0008033 "tRNA processing"
evidence=IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR002730
InterPro:IPR016848 Pfam:PF01868 PIRSF:PIRSF027081 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0004540 GO:GO:0006364
GO:GO:0006379 EMBL:AC004450 GO:GO:0005655 GO:GO:0000172
eggNOG:NOG255667 KO:K03538 Gene3D:2.30.30.210 InterPro:IPR023534
SUPFAM:SSF101744 EMBL:AY086048 IPI:IPI00546439 PIR:B84863
RefSeq:NP_565993.1 UniGene:At.21448 ProteinModelPortal:Q9ZW76
SMR:Q9ZW76 PaxDb:Q9ZW76 PRIDE:Q9ZW76 EnsemblPlants:AT2G43190.1
GeneID:818920 KEGG:ath:AT2G43190 TAIR:At2g43190
HOGENOM:HOG000071085 InParanoid:Q9ZW76 OMA:IMIRETA PhylomeDB:Q9ZW76
ProtClustDB:CLSN2688903 ArrayExpress:Q9ZW76 Genevestigator:Q9ZW76
Uniprot:Q9ZW76
Length = 296
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 131/218 (60%), Positives = 175/218 (80%)
Query: 92 EESGLTYSQLPQSIHENLLTTNVEPSS-RGSTVDNVLHGLFQNGDSAQKYLQGSRSMKID 150
++ + Y++L + ENLL TNV+ SS +G+ VD VLH L ++GDSAQKYLQG++S+K+D
Sbjct: 75 DDDSVAYTKLSHPVDENLLATNVKFSSAKGTIVDKVLHNLLRSGDSAQKYLQGTKSVKLD 134
Query: 151 NWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPM 210
N+ILLDN+VQ R+ ++GS KA Q SKRS+ MSMK+LK+SGAL +PKDLQKF+ +KPM
Sbjct: 135 NYILLDNFVQSRSSASGSK-KASQKDSKRSKSRMSMKRLKKSGALHIPKDLQKFDLFKPM 193
Query: 211 HEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFG 270
H MW+ Y+ +L+K TGK QL+ LLSADLHGA + VAECK ++ TG+ GIM+RET+ETFG
Sbjct: 194 HGMWESYMMKLIKVTGKIQLSLTLLSADLHGAFMFVAECKIASFTGVQGIMVRETSETFG 253
Query: 271 MVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN 308
++T DDKF VVPKK+SVF+ ++DCWKITL GDK SR+
Sbjct: 254 IITRDDKFRVVPKKLSVFIIQLDCWKITLHGDKFISRD 291
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 61/171 (35%), Positives = 96/171 (56%)
Query: 1 MATNTSTEDQRKRTMEALERRFATAKAEALQQV--KHGK-KRSLNDDEMETPATNSSNIA 57
M T T DQ + M A+ERR A AKA+ LQQ K+ K K+ +D ++ ++ ++
Sbjct: 1 MGTETVVHDQARWAMAAMERRLAVAKAQLLQQQQQKNEKDKKGTSDVDVSMKESHQADSL 60
Query: 58 SSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPS 117
+P T + K + K + + + YT + L + + S S
Sbjct: 61 PTPSKT------SIKKVDPKDDDSVA-YTKLSHPVDENLLATNVKFS------------S 101
Query: 118 SRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGS 168
++G+ VD VLH L ++GDSAQKYLQG++S+K+DN+ILLDN+VQ R+ ++GS
Sbjct: 102 AKGTIVDKVLHNLLRSGDSAQKYLQGTKSVKLDNYILLDNFVQSRSSASGS 152
>UNIPROTKB|Q2KIB9 [details] [associations]
symbol:POP4 "Ribonuclease P protein subunit p29"
species:9913 "Bos taurus" [GO:0004526 "ribonuclease P activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005655 "nucleolar ribonuclease P
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000172 "ribonuclease MRP complex" evidence=IEA]
InterPro:IPR002730 InterPro:IPR016848 Pfam:PF01868
PIRSF:PIRSF027081 SMART:SM00538 GO:GO:0003723 GO:GO:0008033
GO:GO:0006364 GO:GO:0006379 GO:GO:0005655 GO:GO:0000172
GO:GO:0004526 eggNOG:NOG255667 KO:K03538 Gene3D:2.30.30.210
InterPro:IPR023534 SUPFAM:SSF101744 EMBL:BC112695 IPI:IPI00704290
RefSeq:NP_001106753.1 UniGene:Bt.21490 ProteinModelPortal:Q2KIB9
STRING:Q2KIB9 GeneID:614870 KEGG:bta:614870 CTD:10775
HOGENOM:HOG000007746 HOVERGEN:HBG002676 InParanoid:Q2KIB9
OrthoDB:EOG4TXBT7 NextBio:20899328 ArrayExpress:Q2KIB9
Uniprot:Q2KIB9
Length = 220
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 56/189 (29%), Positives = 98/189 (51%)
Query: 125 NVLHGLFQNGDS-AQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKH 183
+V H Q ++ + +L+ RSM + L++++Q + V Q ++ K
Sbjct: 18 DVQHSGAQRAEAFVRAFLK--RSMPRMSQQALEDHLQRKAVVLEYFTHRKQKEKRKKSKG 75
Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
+S KQ + D+ + Q++ + P+HE+WK YI L LK + Q+ Q LL ADL
Sbjct: 76 LSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 135
Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
HGA + V + K + G++GI+++ET F ++T +D+ V+PK VF +D + +
Sbjct: 136 HGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYI 195
Query: 300 LGDKLTSRN 308
G K R+
Sbjct: 196 YGSKFQLRS 204
>UNIPROTKB|Q58DW8 [details] [associations]
symbol:POP4 "POP4 (Processing of , S. cerevisiae) homolog"
species:9913 "Bos taurus" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005655 "nucleolar ribonuclease
P complex" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000172
"ribonuclease MRP complex" evidence=IEA] InterPro:IPR002730
InterPro:IPR016848 Pfam:PF01868 PIRSF:PIRSF027081 SMART:SM00538
GO:GO:0003723 GO:GO:0008033 GO:GO:0004540 GO:GO:0006364
GO:GO:0006379 GO:GO:0005655 GO:GO:0000172
GeneTree:ENSGT00390000010067 KO:K03538 Gene3D:2.30.30.210
InterPro:IPR023534 SUPFAM:SSF101744 IPI:IPI00704290
UniGene:Bt.21490 GeneID:614870 KEGG:bta:614870 CTD:10775
HOVERGEN:HBG002676 NextBio:20899328 OMA:RSKCPSY EMBL:DAAA02046773
EMBL:BT021479 IPI:IPI00760379 RefSeq:NP_001029942.1 STRING:Q58DW8
Ensembl:ENSBTAT00000002876 InParanoid:Q58DW8 Uniprot:Q58DW8
Length = 182
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/158 (31%), Positives = 84/158 (53%)
Query: 155 LDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMW 214
L++++Q + V Q ++ K +S KQ + D+ + Q++ + P+HE+W
Sbjct: 9 LEDHLQRKAVVLEYFTHRKQKEKRKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELW 68
Query: 215 KGYITQL---LKSTGKNQLAQC-LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFG 270
K YI L LK + Q+ Q LL ADLHGA + V + K + G++GI+++ET F
Sbjct: 69 KQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFK 128
Query: 271 MVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN 308
++T +D+ V+PK VF +D + + G K R+
Sbjct: 129 IITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRS 166
>RGD|1305955 [details] [associations]
symbol:Pop4 "processing of precursor 4, ribonuclease P/MRP
subunit (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0000172 "ribonuclease MRP complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004526 "ribonuclease P activity"
evidence=IEA] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002730 InterPro:IPR016848
Pfam:PF01868 PIRSF:PIRSF027081 SMART:SM00538 RGD:1305955
GO:GO:0003723 GO:GO:0008033 GO:GO:0006364 GO:GO:0006379
GO:GO:0005655 GO:GO:0000172 GO:GO:0004526 eggNOG:NOG255667
GeneTree:ENSGT00390000010067 KO:K03538 Gene3D:2.30.30.210
InterPro:IPR023534 SUPFAM:SSF101744 CTD:10775 HOGENOM:HOG000007746
HOVERGEN:HBG002676 OrthoDB:EOG4TXBT7 EMBL:BC088183 IPI:IPI00364315
RefSeq:NP_001009642.1 UniGene:Rn.3013 ProteinModelPortal:Q5M882
STRING:Q5M882 Ensembl:ENSRNOT00000020474 GeneID:292831
KEGG:rno:292831 UCSC:RGD:1305955 InParanoid:Q5M882 NextBio:634875
Genevestigator:Q5M882 GermOnline:ENSRNOG00000027646 Uniprot:Q5M882
Length = 221
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/134 (35%), Positives = 74/134 (55%)
Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
K+ K +S KQ + D+ + Q++ + P+HE+WK YI L LK + Q+ Q
Sbjct: 71 KKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAK 130
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
LL ADLHGA I V + K + G++GI+++ET F ++T +D V+PK+ VF +D
Sbjct: 131 LLKADLHGAVISVTKSKCPSYVGVTGILLQETKHVFKIITKEDHLKVIPKQNCVFTIEID 190
Query: 294 CWKITLLGDKLTSR 307
+ + G K R
Sbjct: 191 DFISYIYGSKFQLR 204
>UNIPROTKB|F1NGN1 [details] [associations]
symbol:POP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000172 "ribonuclease MRP complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005655 "nucleolar ribonuclease P
complex" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002730 InterPro:IPR016848
Pfam:PF01868 PIRSF:PIRSF027081 GO:GO:0003723 GO:GO:0008033
GO:GO:0004540 GO:GO:0006364 GO:GO:0006379 GO:GO:0005655
GO:GO:0000172 GeneTree:ENSGT00390000010067 Gene3D:2.30.30.210
InterPro:IPR023534 SUPFAM:SSF101744 OMA:RSKCPSY EMBL:AADN02031659
EMBL:AADN02038594 EMBL:AADN02038595 EMBL:AADN02038596
EMBL:AADN02038597 EMBL:AADN02038598 IPI:IPI00813987
Ensembl:ENSGALT00000039493 Uniprot:F1NGN1
Length = 199
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/182 (29%), Positives = 90/182 (49%)
Query: 132 QNGDSAQKYLQG--SRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQL 189
Q + A+ ++ RSM + + + + V H + + +R K + KQ
Sbjct: 1 QGSEEAKAFVSAFLKRSMPQKKDEAIQDVLTRKAVVLEHHCRRRKQPKRRKTKTFTAKQR 60
Query: 190 KRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADLHGANII 245
+ ++ + Q++E + P+HE+WK YI L LK + Q+ Q LL ADLHGA +
Sbjct: 61 RELRLFEIEPEQQRYELFLPLHELWKQYIRDLCYGLKPDAQPQMVQSKLLKADLHGAIVT 120
Query: 246 VAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLT 305
V + K + G++GI+++E F ++T D+K VVPK +VF D + + G K
Sbjct: 121 VTKSKCPSYVGITGIILQEFKHVFKIITKDNKLKVVPKMNNVFSLETDGFISYIYGSKFQ 180
Query: 306 SR 307
R
Sbjct: 181 FR 182
>UNIPROTKB|F1RNY8 [details] [associations]
symbol:POP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008033 "tRNA processing" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000172 "ribonuclease
MRP complex" evidence=IEA] InterPro:IPR002730 InterPro:IPR016848
Pfam:PF01868 PIRSF:PIRSF027081 SMART:SM00538 GO:GO:0003723
GO:GO:0008033 GO:GO:0004540 GO:GO:0006364 GO:GO:0006379
GO:GO:0005655 GO:GO:0000172 GeneTree:ENSGT00390000010067 KO:K03538
Gene3D:2.30.30.210 InterPro:IPR023534 SUPFAM:SSF101744 OMA:RSKCPSY
EMBL:FP312871 RefSeq:XP_003127052.1 UniGene:Ssc.24216
Ensembl:ENSSSCT00000003155 GeneID:100523065 KEGG:ssc:100523065
Uniprot:F1RNY8
Length = 220
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 46/139 (33%), Positives = 76/139 (54%)
Query: 174 QIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQL 230
Q K+ + +S KQ + D+ + Q++ + P+HE+WK YI L LK + Q+
Sbjct: 66 QKEKKKKSRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQM 125
Query: 231 AQC-LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFM 289
Q LL ADLHGA + V + K + G++GI+++ET F ++T +D+ V+PK VF
Sbjct: 126 IQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFT 185
Query: 290 FRVDCWKITLLGDKLTSRN 308
+D + + G K R+
Sbjct: 186 VEIDGFISYIYGSKFQLRS 204
>UNIPROTKB|F1Q2R6 [details] [associations]
symbol:POP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005655 "nucleolar ribonuclease P
complex" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000172
"ribonuclease MRP complex" evidence=IEA] InterPro:IPR002730
InterPro:IPR016848 Pfam:PF01868 PIRSF:PIRSF027081 SMART:SM00538
GO:GO:0003723 GO:GO:0008033 GO:GO:0004540 GO:GO:0006364
GO:GO:0006379 GO:GO:0005655 GO:GO:0000172
GeneTree:ENSGT00390000010067 Gene3D:2.30.30.210 InterPro:IPR023534
SUPFAM:SSF101744 OMA:RSKCPSY EMBL:AAEX03001107
Ensembl:ENSCAFT00000012195 Uniprot:F1Q2R6
Length = 182
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 178 KRSR-KHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC 233
KR R K +S +Q + D+ + Q++ + P+HE+WK YI L LK + Q+ Q
Sbjct: 31 KRKRSKGLSARQRRELHLFDITAEQQRYNLFLPLHELWKQYIRDLCGGLKPDTQPQMIQA 90
Query: 234 -LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV 292
LL ADLHGA I V + K + G++GI+++ET F ++T +D+ V+PK VF +
Sbjct: 91 KLLKADLHGALISVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFTVEI 150
Query: 293 DCWKITLLGDKLTSRN 308
D + + G K R+
Sbjct: 151 DGFISYIYGSKFQLRS 166
>MGI|MGI:1913411 [details] [associations]
symbol:Pop4 "processing of precursor 4, ribonuclease P/MRP
family, (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000172
"ribonuclease MRP complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004526 "ribonuclease P activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005655 "nucleolar ribonuclease P
complex" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030677 "ribonuclease P complex" evidence=IEA]
InterPro:IPR002730 InterPro:IPR016848 Pfam:PF01868
PIRSF:PIRSF027081 SMART:SM00538 MGI:MGI:1913411 GO:GO:0003723
GO:GO:0008033 GO:GO:0006364 GO:GO:0006379 GO:GO:0005655
GO:GO:0000172 GO:GO:0004526 eggNOG:NOG255667
GeneTree:ENSGT00390000010067 KO:K03538 Gene3D:2.30.30.210
InterPro:IPR023534 SUPFAM:SSF101744 CTD:10775 HOGENOM:HOG000007746
HOVERGEN:HBG002676 OrthoDB:EOG4TXBT7 OMA:RSKCPSY EMBL:AK002855
EMBL:AK003293 EMBL:AK150459 EMBL:AK152948 EMBL:BC011465
IPI:IPI00132900 RefSeq:NP_079666.1 UniGene:Mm.22284
ProteinModelPortal:Q9CR08 SMR:Q9CR08 STRING:Q9CR08
PhosphoSite:Q9CR08 PaxDb:Q9CR08 PRIDE:Q9CR08 DNASU:66161
Ensembl:ENSMUST00000032585 GeneID:66161 KEGG:mmu:66161
UCSC:uc009gkv.1 InParanoid:Q9CR08 NextBio:320810 Bgee:Q9CR08
Genevestigator:Q9CR08 GermOnline:ENSMUSG00000030423 Uniprot:Q9CR08
Length = 221
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 47/134 (35%), Positives = 73/134 (54%)
Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
K+ K +S KQ + D+ + Q++ + P+HE+WK YI L LK + Q+ Q
Sbjct: 71 KKKSKGLSAKQRRDMRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAK 130
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
LL ADLHGA I V + K + G++GI+++ET F ++T +D V+PK VF +D
Sbjct: 131 LLKADLHGAIISVTKSKCPSYVGVTGILLQETKHVFKIITREDHLKVIPKLNCVFTIEID 190
Query: 294 CWKITLLGDKLTSR 307
+ + G K R
Sbjct: 191 DFISYIYGSKFQLR 204
>ZFIN|ZDB-GENE-050522-505 [details] [associations]
symbol:pop4 "processing of precursor 4,
ribonuclease P/MRP subunit" species:7955 "Danio rerio" [GO:0030677
"ribonuclease P complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0000172 "ribonuclease MRP complex"
evidence=IEA] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
InterPro:IPR002730 InterPro:IPR016848 Pfam:PF01868
PIRSF:PIRSF027081 SMART:SM00538 ZFIN:ZDB-GENE-050522-505
GO:GO:0003723 GO:GO:0008033 GO:GO:0004540 GO:GO:0006364
GO:GO:0006379 GO:GO:0005655 GO:GO:0000172 eggNOG:NOG255667
KO:K03538 Gene3D:2.30.30.210 InterPro:IPR023534 SUPFAM:SSF101744
CTD:10775 HOGENOM:HOG000007746 HOVERGEN:HBG002676 OrthoDB:EOG4TXBT7
EMBL:BC095328 IPI:IPI00810221 RefSeq:NP_001018585.1
UniGene:Dr.80074 ProteinModelPortal:Q503H3 STRING:Q503H3
GeneID:553787 KEGG:dre:553787 InParanoid:Q503H3 NextBio:20880505
ArrayExpress:Q503H3 Uniprot:Q503H3
Length = 219
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 47/135 (34%), Positives = 71/135 (52%)
Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKST--GKNQ--LAQC 233
K K ++ K+ +R L + QK+E + P+HE+WK YI L G N + Q
Sbjct: 69 KVKAKGLNAKERRRLQIFQLKPEHQKYELFLPLHELWKSYIEDLCNGLKPGSNPQVIQQK 128
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
LL AD HGA + V K + GL+GI+++E F ++T +DK V+PK+ SVF V
Sbjct: 129 LLKADFHGAILTVVRSKCPSYVGLTGILVQELKHIFKLITKEDKLKVIPKRNSVFSVEVG 188
Query: 294 CWKITLLGDKLTSRN 308
+ + G K R+
Sbjct: 189 GFVSHIYGSKFELRS 203
>UNIPROTKB|O95707 [details] [associations]
symbol:POP4 "Ribonuclease P protein subunit p29"
species:9606 "Homo sapiens" [GO:0000172 "ribonuclease MRP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005655
"nucleolar ribonuclease P complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0004526
"ribonuclease P activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR002730 InterPro:IPR016848
Pfam:PF01868 PIRSF:PIRSF027081 SMART:SM00538 GO:GO:0003723
GO:GO:0008033 GO:GO:0006364 GO:GO:0006379 GO:GO:0005655
GO:GO:0000172 GO:GO:0004526 eggNOG:NOG255667 KO:K03538
Gene3D:2.30.30.210 InterPro:IPR023534 SUPFAM:SSF101744 CTD:10775
HOGENOM:HOG000007746 HOVERGEN:HBG002676 OrthoDB:EOG4TXBT7
EMBL:AF001176 EMBL:Y18863 EMBL:CR536569 EMBL:AK314790 EMBL:BC004438
EMBL:BC006098 IPI:IPI00032791 RefSeq:NP_006618.1 UniGene:Hs.412870
ProteinModelPortal:O95707 SMR:O95707 IntAct:O95707 STRING:O95707
PhosphoSite:O95707 PaxDb:O95707 PRIDE:O95707 DNASU:10775
Ensembl:ENST00000221770 GeneID:10775 KEGG:hsa:10775 UCSC:uc002nsf.2
GeneCards:GC19P030097 HGNC:HGNC:30081 HPA:HPA042748 MIM:606114
neXtProt:NX_O95707 PharmGKB:PA134987921 InParanoid:O95707
OMA:RSKCPSY PhylomeDB:O95707 GenomeRNAi:10775 NextBio:40914
ArrayExpress:O95707 Bgee:O95707 CleanEx:HS_POP4
Genevestigator:O95707 GermOnline:ENSG00000105171 Uniprot:O95707
Length = 220
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 46/135 (34%), Positives = 74/135 (54%)
Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
K+ K +S +Q + D+ + Q++ + P+HE+WK YI L LK + Q+ Q
Sbjct: 70 KKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAK 129
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
LL ADLHGA I V + K + G++GI+++ET F ++T +D+ V+PK VF D
Sbjct: 130 LLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETD 189
Query: 294 CWKITLLGDKLTSRN 308
+ + G K R+
Sbjct: 190 GFISYIYGSKFQLRS 204
>WB|WBGene00007603 [details] [associations]
symbol:C15C6.4 species:6239 "Caenorhabditis elegans"
[GO:0000172 "ribonuclease MRP complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0030677 "ribonuclease P complex"
evidence=IEA] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR002730 InterPro:IPR016848 Pfam:PF01868
PIRSF:PIRSF027081 SMART:SM00538 GO:GO:0040010 GO:GO:0003723
GO:GO:0040035 GO:GO:0008033 GO:GO:0004540 GO:GO:0006364
GO:GO:0006379 GO:GO:0005655 GO:GO:0000172 eggNOG:NOG255667
GeneTree:ENSGT00390000010067 KO:K03538 Gene3D:2.30.30.210
InterPro:IPR023534 SUPFAM:SSF101744 EMBL:Z81034 PIR:T19305
RefSeq:NP_493083.1 ProteinModelPortal:Q9XVT1 SMR:Q9XVT1
DIP:DIP-24614N MINT:MINT-1095109 STRING:Q9XVT1 PaxDb:Q9XVT1
EnsemblMetazoa:C15C6.4 GeneID:173100 KEGG:cel:CELE_C15C6.4
UCSC:C15C6.4 CTD:173100 WormBase:C15C6.4 InParanoid:Q9XVT1
OMA:QKYFRER NextBio:878273 Uniprot:Q9XVT1
Length = 198
Score = 185 (70.2 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 46/141 (32%), Positives = 71/141 (50%)
Query: 169 HI-KALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKST-G 226
H+ K + H KR K L R + K KF PM+ W+ Y + L +
Sbjct: 26 HLEKNVTSHFKRKSKKTEKTNLTRGRLTEDDKKAFKFADIVPMNTDWQKYFRERLGNHFS 85
Query: 227 KNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVS 286
++ + +L +D HGA + + + G+SGI++ ET TF MVT +D+F V+PKK S
Sbjct: 86 STKIEKTILKSDYHGALLTIWLAENPTQIGISGIVVLETRHTFQMVTQEDRFVVIPKKGS 145
Query: 287 VFMFRVDCWKITLLGDKLTSR 307
VF F + +L GD + +R
Sbjct: 146 VFRFILGDRLFSLFGDGMRTR 166
>UNIPROTKB|A8MYC1 [details] [associations]
symbol:POP4 "cDNA FLJ57473, highly similar to Ribonuclease
P protein subunit p29 (EC 3.1.26.5)" species:9606 "Homo sapiens"
[GO:0000172 "ribonuclease MRP complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0030677 "ribonuclease P complex"
evidence=IEA] InterPro:IPR002730 Pfam:PF01868 SMART:SM00538
GO:GO:0003723 GO:GO:0008033 GO:GO:0004540 GO:GO:0006364
GO:GO:0006379 GO:GO:0000172 Gene3D:2.30.30.210 InterPro:IPR023534
SUPFAM:SSF101744 HOGENOM:HOG000007746 HOVERGEN:HBG002676
UniGene:Hs.412870 HGNC:HGNC:30081 EMBL:AC010505 EMBL:AK303791
IPI:IPI00908894 SMR:A8MYC1 STRING:A8MYC1 Ensembl:ENST00000392279
UCSC:uc002nsg.2 GO:GO:0030677 Uniprot:A8MYC1
Length = 139
Score = 183 (69.5 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 201 LQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADLHGANIIVAECKTSALTG 256
+ ++ + P+HE+WK YI L LK + Q+ Q LL ADLHGA I V + K + G
Sbjct: 12 MSRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISVTKSKCPSYVG 71
Query: 257 LSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN 308
++GI+++ET F ++T +D+ V+PK VF D + + G K R+
Sbjct: 72 ITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRS 123
>UNIPROTKB|K7ERD7 [details] [associations]
symbol:POP4 "Ribonuclease P protein subunit p29"
species:9606 "Homo sapiens" [GO:0000172 "ribonuclease MRP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030677 "ribonuclease P
complex" evidence=IEA] InterPro:IPR002730 Pfam:PF01868
Gene3D:2.30.30.210 InterPro:IPR023534 SUPFAM:SSF101744
HGNC:HGNC:30081 EMBL:AC010505 Ensembl:ENST00000586420
Uniprot:K7ERD7
Length = 181
Score = 180 (68.4 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 40/110 (36%), Positives = 63/110 (57%)
Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
K+ K +S +Q + D+ + Q + P+HE+WK YI L LK + Q+ Q
Sbjct: 70 KKKAKGLSARQRRELRLFDIKPEQQSL--FLPLHELWKQYIRDLCSGLKPDTQPQMIQAK 127
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPK 283
LL ADLHGA I V + K + G++GI+++ET F ++T +D+ V+PK
Sbjct: 128 LLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPK 177
>FB|FBgn0035831 [details] [associations]
symbol:CG8038 species:7227 "Drosophila melanogaster"
[GO:0004526 "ribonuclease P activity" evidence=ISS] [GO:0030677
"ribonuclease P complex" evidence=ISS] [GO:0005655 "nucleolar
ribonuclease P complex" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000172 "ribonuclease MRP
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002730 InterPro:IPR016848 Pfam:PF01868
PIRSF:PIRSF027081 SMART:SM00538 EMBL:AE014296 GO:GO:0003723
GO:GO:0008033 GO:GO:0006364 GO:GO:0006379 GO:GO:0005655
GO:GO:0000172 GO:GO:0004526 GeneTree:ENSGT00390000010067 KO:K03538
Gene3D:2.30.30.210 InterPro:IPR023534 SUPFAM:SSF101744
FlyBase:FBgn0035831 RefSeq:NP_648168.1 UniGene:Dm.31180
ProteinModelPortal:Q9VSC6 SMR:Q9VSC6 IntAct:Q9VSC6
MINT:MINT-1705635 PRIDE:Q9VSC6 EnsemblMetazoa:FBtr0076763
GeneID:38889 KEGG:dme:Dmel_CG8038 UCSC:CG8038-RA InParanoid:Q9VSC6
OMA:KSECVFG PhylomeDB:Q9VSC6 GenomeRNAi:38889 NextBio:810873
Bgee:Q9VSC6 Uniprot:Q9VSC6
Length = 206
Score = 173 (66.0 bits), Expect = 7.6e-13, P = 7.6e-13
Identities = 46/156 (29%), Positives = 74/156 (47%)
Query: 167 GSHIKALQIHSKRSRKHMSMKQLKRS----GALDLPKDLQKFEKYKPMHEMWKGYITQLL 222
G+ IK + HS++ R H S +R G LP K+E+ P+H +WKGY+ + L
Sbjct: 36 GTKIK--KQHSRKRRAHKSSTLSRREYAALGLNTLPTKQMKYEEALPLHHLWKGYVREHL 93
Query: 223 KSTGKNQLAQC-----------LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGM 271
+ +++ Q L+ DLHGA + V + K S L L+GI + +T +
Sbjct: 94 ELREGDEVPQVHDARYDEFSRKLVKLDLHGAKMKVLQSKCSTLENLAGICVMDTKNVLKL 153
Query: 272 VTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSR 307
+ D + +PK VF +V + T+ G L R
Sbjct: 154 LGKDHRLRTIPKSECVFGMKVGNMEFTIFGQHLNIR 189
>DICTYBASE|DDB_G0288543 [details] [associations]
symbol:pop4 "RNase MRP protein subunit" species:44689
"Dictyostelium discoideum" [GO:0033204 "ribonuclease P RNA binding"
evidence=IDA] [GO:0030677 "ribonuclease P complex" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA;ISS] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=IEA;ISS] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000172 "ribonuclease
MRP complex" evidence=IEA;ISS] [GO:0000171 "ribonuclease MRP
activity" evidence=ISS] [GO:0004526 "ribonuclease P activity"
evidence=ISS] InterPro:IPR002730 InterPro:IPR016848 Pfam:PF01868
PIRSF:PIRSF027081 dictyBase:DDB_G0288543 GenomeReviews:CM000154_GR
GO:GO:0008033 GO:GO:0006364 GO:GO:0006379 GO:GO:0005655
GO:GO:0000172 GO:GO:0004526 eggNOG:NOG255667 KO:K03538
Gene3D:2.30.30.210 InterPro:IPR023534 SUPFAM:SSF101744 OMA:QETENTF
EMBL:AAFI02000116 EMBL:HM452383 RefSeq:XP_636667.1
ProteinModelPortal:Q54IT0 EnsemblProtists:DDB0237625 GeneID:8626680
KEGG:ddi:DDB_G0288543 GO:GO:0033204 Uniprot:Q54IT0
Length = 252
Score = 177 (67.4 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 34/124 (27%), Positives = 64/124 (51%)
Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSA 237
K K + K+ + + + +++Y P+H++W YI +++ L +L A
Sbjct: 106 KLKTKKLGSKKKRELSFFSISSENCIYDQYLPLHQLWTQYIQDVMQQQKGPALVNKILKA 165
Query: 238 DLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKI 297
DLHGA +IV + K G GI+++ET TF ++T ++K +++PK+ F +
Sbjct: 166 DLHGAIVIVTKSKCPTFVGQKGIIVQETENTFKIITKENKLNIIPKEQCQFYLECCNQVV 225
Query: 298 TLLG 301
T+ G
Sbjct: 226 TIFG 229
>POMBASE|SPBC1703.01c [details] [associations]
symbol:SPBC1703.01c "RNase P and RNase MRP subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000172
"ribonuclease MRP complex" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=ISO]
[GO:0000171 "ribonuclease MRP activity" evidence=ISO] [GO:0004526
"ribonuclease P activity" evidence=ISO] InterPro:IPR002730
InterPro:IPR016848 Pfam:PF01868 PIRSF:PIRSF027081 SMART:SM00538
PomBase:SPBC1703.01c EMBL:CU329671 GO:GO:0003723 GO:GO:0008033
GO:GO:0006364 GO:GO:0006379 GO:GO:0005655 GO:GO:0000172
GO:GO:0004526 eggNOG:NOG255667 KO:K03538 Gene3D:2.30.30.210
InterPro:IPR023534 SUPFAM:SSF101744 PIR:T50314
RefSeq:XP_001713139.1 ProteinModelPortal:Q9P7W9
EnsemblFungi:SPBC1703.01c.1 GeneID:2539947 KEGG:spo:SPBC1703.01c
OMA:QETENTF OrthoDB:EOG44J5T9 NextBio:20801090 Uniprot:Q9P7W9
Length = 217
Score = 151 (58.2 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 177 SKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKS-TGKNQLAQCLL 235
+ + RK +S K+ K+ +PK + + ++K +H MW YI +++ TG++ +A+ L
Sbjct: 67 ASKKRKKLSSKEKKKLQLNVVPK-IADYSQFKHLHSMWCSYILEVIAGCTGESLMAK-LA 124
Query: 236 SADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
A+ GA + V K++ GL GI I E+ ++T +++ VPK+ SV VD
Sbjct: 125 KAEYQGAYMQVLRSKSTTRVGLEGICIHESKHMLSLITKENRVVRVPKQDSVMKVIVD 182
>SGD|S000000461 [details] [associations]
symbol:POP4 "Subunit of both RNase MRP and nuclear RNase P"
species:4932 "Saccharomyces cerevisiae" [GO:0006364 "rRNA
processing" evidence=IEA;IMP;TAS] [GO:0000171 "ribonuclease MRP
activity" evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005655
"nucleolar ribonuclease P complex" evidence=IEA;IDA] [GO:0006379
"mRNA cleavage" evidence=IEA;IPI] [GO:0008033 "tRNA processing"
evidence=IEA;IMP;TAS] [GO:0030677 "ribonuclease P complex"
evidence=IEA] [GO:0000172 "ribonuclease MRP complex"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0034965 "intronic box C/D snoRNA processing" evidence=IDA]
[GO:0004526 "ribonuclease P activity" evidence=IMP;IDA]
InterPro:IPR002730 InterPro:IPR016848 Pfam:PF01868
PIRSF:PIRSF027081 SMART:SM00538 SGD:S000000461 EMBL:BK006936
GO:GO:0003723 GO:GO:0008033 EMBL:X70529 GO:GO:0004540 GO:GO:0006364
GO:GO:0006379 GO:GO:0005655 GO:GO:0000172 GO:GO:0034965 EMBL:Z36126
PIR:S32959 RefSeq:NP_009816.1 ProteinModelPortal:P38336 SMR:P38336
DIP:DIP-6772N IntAct:P38336 MINT:MINT-669334 STRING:P38336
PeptideAtlas:P38336 EnsemblFungi:YBR257W GeneID:852560
KEGG:sce:YBR257W CYGD:YBR257w eggNOG:NOG255667
GeneTree:ENSGT00390000010067 HOGENOM:HOG000000736 KO:K03538
OMA:DSKEWNE OrthoDB:EOG4RBTTV NextBio:971667 Genevestigator:P38336
GermOnline:YBR257W Gene3D:2.30.30.210 InterPro:IPR023534
SUPFAM:SSF101744 Uniprot:P38336
Length = 279
Score = 139 (54.0 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 62/222 (27%), Positives = 106/222 (47%)
Query: 110 LTTNVEPSSRGS--TVDNVLHGLFQNGDSAQKYLQGSRSMKID--NWILLDNYVQGRNVS 165
LT+ ++ R S +DN L + Q +SA K L+ +I+ + I L Y+ +
Sbjct: 42 LTSRLQRQQRKSKLNLDN-LQKVSQL-ESADKQLEKRDYQRINKNSKIALREYINNCKKN 99
Query: 166 TGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMH-EMWKGYITQLLKS 224
T +K L +K + K + ++ + + L ++ + PM+ E+W YI +LL
Sbjct: 100 TKKCLK-LAYENKITDKEDLLHYIEEKHPT-IYESLPQYVDFVPMYKELWINYIKELLNI 157
Query: 225 TGKN------QLAQCLLS-ADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPD-- 275
T KN LA LS AD +GA + V + K L GL GI+I ++ + F M+
Sbjct: 158 T-KNLKTFNGSLALLKLSMADYNGALLRVTKSKNKTLIGLQGIVIWDSQKFFIMIVKGNI 216
Query: 276 -DKFHVVPKKVSVFMFRV-------DCWKITLLGDKLTSRNL 309
D+ +PKK +VF F + + ++LGD+ R++
Sbjct: 217 IDEIKCIPKKGTVFQFEIPISDDDDSALRYSILGDRFKYRSV 258
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.127 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 309 0.00079 116 3 11 23 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 606 (64 KB)
Total size of DFA: 205 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 29.44u 0.08s 29.52t Elapsed: 00:00:03
Total cpu time: 29.45u 0.08s 29.53t Elapsed: 00:00:04
Start: Fri May 10 05:45:52 2013 End: Fri May 10 05:45:56 2013