BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040168
         (309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZAE|A Chain A, Crystal Structure Of Protein Ph1601p In Complex With
           Protein Ph1771p Of Archaeal Ribonuclease P From
           Pyrococcus Horikoshii Ot3
 pdb|2ZAE|C Chain C, Crystal Structure Of Protein Ph1601p In Complex With
           Protein Ph1771p Of Archaeal Ribonuclease P From
           Pyrococcus Horikoshii Ot3
          Length = 127

 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV- 292
           ++  +L G  + +      A  G+ G +I ET     +V   D+   VPK VS+F F   
Sbjct: 43  IIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNM--LVIAGDRIWKVPKDVSIFEFEAD 100

Query: 293 DCWKITLLGDKLTSR 307
           D  KI + G++L  R
Sbjct: 101 DGTKIKIPGERLVGR 115


>pdb|1V76|A Chain A, Crystal Structure Of Archaeal Ribonuclease P Protein
           Ph1771p From Pyrococcus Horikoshii Ot3
 pdb|1V76|B Chain B, Crystal Structure Of Archaeal Ribonuclease P Protein
           Ph1771p From Pyrococcus Horikoshii Ot3
          Length = 96

 Score = 34.7 bits (78), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 238 DLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV-DCWK 296
           +L G  + +      A  G+ G +I ET     +V   D+   VPK VS+F F   D  K
Sbjct: 16  ELIGLRVRIVGSTHPAFVGIEGYVIDETRNM--LVIAGDRIWKVPKDVSIFEFEADDGTK 73

Query: 297 ITLLGDKLTSR 307
           I + G++L  R
Sbjct: 74  IKIPGERLVGR 84


>pdb|1OQK|A Chain A, Structure Of Mth11: A Homologue Of Human Rnase P Protein
           Rpp29
          Length = 97

 Score = 32.0 bits (71), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 238 DLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFR 291
           +L G ++ +A      + G+SG ++ ET  T  +   D +   VPK ++VF FR
Sbjct: 15  ELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFR 68


>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
           Cytidylyltransferase From Salmonella Typhi
 pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
           With Ctp
          Length = 259

 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGAN 243
           M+ K +  +G L      +   K KPM E+            GK  L   +    +HG  
Sbjct: 1   MASKAVILAGGLGTRLSEETIVKPKPMVEI-----------GGKPILWHIMKMYSVHGIK 49

Query: 244 IIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLL 300
             +  C      G  G +I+E    + +   D  FH+   ++ V   RV+ W +TL+
Sbjct: 50  DFIICC------GYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLV 100


>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
          Length = 321

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%)

Query: 131 FQNGDSAQKYLQGSRSMKIDNW---ILLDNYVQGRNVSTGSHIKALQIHSKR--SRKHMS 185
           FQ+G    +  + +  M +D     +LLD+YV+    STG    A + HS R  + K M 
Sbjct: 20  FQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMD 79

Query: 186 MKQLKRSGAL----DLPKDLQKFEKYKPMHEMWKGYIT 219
           +++ +R   L     + +D Q F     + EM+K Y+ 
Sbjct: 80  LRKQQRRELLFNEVVIMRDYQHFN----VVEMYKSYLV 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,490,332
Number of Sequences: 62578
Number of extensions: 325986
Number of successful extensions: 630
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 8
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)