BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040168
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M882|RPP29_RAT Ribonuclease P protein subunit p29 OS=Rattus norvegicus GN=Pop4
PE=2 SV=1
Length = 221
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
+S KQ + D+ + Q++ + P+HE+WK YI L LK + Q+ Q LL ADL
Sbjct: 77 LSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 136
Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
HGA I V + K + G++GI+++ET F ++T +D V+PK+ VF +D + +
Sbjct: 137 HGAVISVTKSKCPSYVGVTGILLQETKHVFKIITKEDHLKVIPKQNCVFTIEIDDFISYI 196
Query: 300 LGDKLTSR 307
G K R
Sbjct: 197 YGSKFQLR 204
>sp|Q5R7B0|RPP29_PONAB Ribonuclease P protein subunit p29 OS=Pongo abelii GN=POP4 PE=2
SV=1
Length = 220
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
+S +Q + D+ + Q++ + P+HE+WK YI L LK + Q+ Q LL ADL
Sbjct: 76 LSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 135
Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
HGA I V + K + G++GI+++ET F ++T +D+ V+PK VF +D + +
Sbjct: 136 HGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVEIDGFISYI 195
Query: 300 LGDKLTSRN 308
G K R+
Sbjct: 196 YGSKFQLRS 204
>sp|Q2KIB9|RPP29_BOVIN Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1
Length = 220
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
+S KQ + D+ + Q++ + P+HE+WK YI L LK + Q+ Q LL ADL
Sbjct: 76 LSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADL 135
Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
HGA + V + K + G++GI+++ET F ++T +D+ V+PK VF +D + +
Sbjct: 136 HGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYI 195
Query: 300 LGDKLTSRN 308
G K R+
Sbjct: 196 YGSKFQLRS 204
>sp|Q9CR08|RPP29_MOUSE Ribonuclease P protein subunit p29 OS=Mus musculus GN=Pop4 PE=2
SV=1
Length = 221
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 178 KRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC- 233
K+ K +S KQ + D+ + Q++ + P+HE+WK YI L LK + Q+ Q
Sbjct: 71 KKKSKGLSAKQRRDMRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPDTQPQMIQAK 130
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
LL ADLHGA I V + K + G++GI+++ET F ++T +D V+PK VF +D
Sbjct: 131 LLKADLHGAIISVTKSKCPSYVGVTGILLQETKHVFKIITREDHLKVIPKLNCVFTIEID 190
Query: 294 CWKITLLGDKLTSR 307
+ + G K R
Sbjct: 191 DFISYIYGSKFQLR 204
>sp|O95707|RPP29_HUMAN Ribonuclease P protein subunit p29 OS=Homo sapiens GN=POP4 PE=1
SV=2
Length = 220
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 184 MSMKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQL---LKSTGKNQLAQC-LLSADL 239
+S +Q + D+ + Q++ + P+HE+WK YI L LK + Q+ Q LL ADL
Sbjct: 76 LSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADL 135
Query: 240 HGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITL 299
HGA I V + K + G++GI+++ET F ++T +D+ V+PK VF D + +
Sbjct: 136 HGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYI 195
Query: 300 LGDKLTSRN 308
G K R+
Sbjct: 196 YGSKFQLRS 204
>sp|P38336|POP4_YEAST RNases MRP/P 32.9 kDa subunit OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=POP4 PE=1 SV=1
Length = 279
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 201 LQKFEKYKPMH-EMWKGYITQLLK-----STGKNQLAQCLLS-ADLHGANIIVAECKTSA 253
L ++ + PM+ E+W YI +LL T LA LS AD +GA + V + K
Sbjct: 133 LPQYVDFVPMYKELWINYIKELLNITKNLKTFNGSLALLKLSMADYNGALLRVTKSKNKT 192
Query: 254 LTGLSGIMIRETTETFGMVTPD---DKFHVVPKKVSVFMFRV-------DCWKITLLGDK 303
L GL GI+I ++ + F M+ D+ +PKK +VF F + + ++LGD+
Sbjct: 193 LIGLQGIVIWDSQKFFIMIVKGNIIDEIKCIPKKGTVFQFEIPISDDDDSALRYSILGDR 252
Query: 304 LTSRNL 309
R++
Sbjct: 253 FKYRSV 258
>sp|Q9P7W9|RNP1_SCHPO Probable ribonuclease P protein subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC1703.01c PE=3
SV=2
Length = 217
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 195 LDLPKDLQKFEKYKPMHEMWKGYITQLLK-STGKNQLAQCLLSADLHGANIIVAECKTSA 253
L++ + + ++K +H MW YI +++ TG++ +A+ L A+ GA + V K++
Sbjct: 84 LNVVPKIADYSQFKHLHSMWCSYILEVIAGCTGESLMAK-LAKAEYQGAYMQVLRSKSTT 142
Query: 254 LTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
GL GI I E+ ++T +++ VPK+ SV VD
Sbjct: 143 RVGLEGICIHESKHMLSLITKENRVVRVPKQDSVMKVIVD 182
>sp|Q57903|RNP1_METJA Ribonuclease P protein component 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rnp1 PE=3 SV=1
Length = 95
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD 293
+L +L G + + E K A+ G+ G ++ ET T + D + V+PK ++VF+F++
Sbjct: 7 ILRHELIGLKVEIVEAKNKAMIGIKGKVVDETRNTLVIEKEDGREVVIPKDIAVFLFQLK 66
Query: 294 CWKITLLGDKLTSR 307
K+ + G L R
Sbjct: 67 GCKVKVDGRLLIGR 80
>sp|A6UWU6|RNP1_META3 Ribonuclease P protein component 1 OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rnp1 PE=3 SV=1
Length = 96
Score = 37.4 bits (85), Expect = 0.13, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 234 LLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHV-VPKKVSVFMFRV 292
+L +L G ++ + + +L GL G ++ ET T + D+ V +PK ++VF F++
Sbjct: 7 ILRHELIGLDVEITQSTNKSLVGLKGKIVYETRNTINIERFDNSKEVMIPKDIAVFKFKL 66
Query: 293 DCWKITLLGDKLTSR 307
+ I ++G+ L R
Sbjct: 67 NEEYIEVIGELLMGR 81
>sp|P22527|RNP1_HALMA Ribonuclease P protein component 1 OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rnp1 PE=3 SV=1
Length = 94
Score = 34.7 bits (78), Expect = 0.98, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 238 DLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKI 297
+L G + V + G+SG ++ ETT+ + D +H VPK + F F + +
Sbjct: 12 ELVGLDCEVVAASNPDVIGISGTVVMETTQMLTLEGADRVWH-VPKDSATFAFDLSTETV 70
Query: 298 TLLGDKLTSR 307
+ GD+L +R
Sbjct: 71 LVDGDRLVAR 80
>sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tor1 PE=1 SV=1
Length = 2335
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 30 LQQVKHGKKRSLNDDEMETPATNSSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQ 89
+ Q+ GK + ++ TP+ + A P +S + +L G F F+GY+
Sbjct: 419 VSQILTGKNFEIRTNDTYTPSFTNIYSAREPDQRSKSTESIILALETLGTFNFTGYSLIS 478
Query: 90 DLEESGLTY 98
++ES L+Y
Sbjct: 479 FIQESVLSY 487
>sp|Q8CSB6|Y1287_STAES UPF0271 protein SE_1287 OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=SE_1287 PE=3 SV=1
Length = 252
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 44 DEMETPATNSSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESG 95
D+ P S+NIA H D N L+KK N + + DL+ G
Sbjct: 23 DQHILPLITSANIACGYHAGDEDVMNETVQLAKKNNISIGAHPGLPDLKGFG 74
>sp|Q5HNU6|Y1168_STAEQ UPF0271 protein SERP1168 OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=SERP1168 PE=3 SV=1
Length = 252
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 44 DEMETPATNSSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESG 95
D+ P S+NIA H D N L+KK N + + DL+ G
Sbjct: 23 DQHILPLITSANIACGYHAGDEDVMNETVQLAKKNNISIGAHPGLPDLKGFG 74
>sp|Q8Z5I4|RFBF_SALTI Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhi
GN=rfbF PE=1 SV=1
Length = 257
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 186 MKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANII 245
MK + +G L + K KPM E+ GK L + +HG
Sbjct: 1 MKAVILAGGLGTRLSEETIVKPKPMVEI-----------GGKPILWHIMKMYSVHGIKDF 49
Query: 246 VAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLL 300
+ C G G +I+E + + D FH+ ++ V RV+ W +TL+
Sbjct: 50 IICC------GYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLV 98
>sp|P26396|RFBF_SALTY Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=rfbF PE=3 SV=1
Length = 257
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 186 MKQLKRSGALDLPKDLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANII 245
MK + +G L + K KPM E+ GK L + +HG
Sbjct: 1 MKAVILAGGLGTRLSEETIVKPKPMVEI-----------GGKPILWHIMKMYSVHGIKDF 49
Query: 246 VAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLL 300
+ C G G +I+E + + D FH+ ++ V RV+ W +TL+
Sbjct: 50 IICC------GYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLV 98
>sp|P32950|CARP2_CANPA Candidapepsin-2 OS=Candida parapsilosis GN=SAPP2 PE=1 SV=1
Length = 412
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 50 ATNSSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENL 109
A S + P V+DR A KSL+ G+ + +G+ D SG T S LP SI +L
Sbjct: 233 AKYSGKLIEEPLVSDRYLAVNLKSLNYNGDNSNAGFGVVVD---SGTTISYLPDSIVNDL 289
Query: 110 ---LTTNVEPSSRGSTVDNVLHGLFQNGDSAQKYLQGSRSMKIDN 151
+ +EP G N L+ + N + QGS S DN
Sbjct: 290 ANKVGAYLEPVGLG----NELYFIDCNANP-----QGSASFTFDN 325
>sp|O26119|RNP1_METTH Ribonuclease P protein component 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rnp1 PE=1 SV=1
Length = 93
Score = 32.0 bits (71), Expect = 5.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 238 DLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFR 291
+L G ++ +A + G+SG ++ ET T + D + VPK ++VF FR
Sbjct: 11 ELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFR 64
>sp|Q2FSF9|DP2L_METHJ DNA polymerase II large subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=polC PE=3 SV=1
Length = 1286
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 137 AQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSK 178
A K L+ R MK+D W L+ +Q S+ S K + IH K
Sbjct: 255 APKVLKNVRKMKMDGWDWLEEMIQATAGSSSSEEKEVGIHPK 296
>sp|P60834|RNP1_SULTO Ribonuclease P protein component 1 OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rnp1 PE=3
SV=1
Length = 77
Score = 31.6 bits (70), Expect = 8.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 238 DLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKI 297
DL G+ I V +L G GI++ ET +TF ++ +K V K +F + K+
Sbjct: 3 DLIGSKIKVLGHSDPSLIGREGIILFETKKTF-LIQTQNKIIRVLKSNGIFEIYSENRKV 61
Query: 298 TLLGDKLTSR 307
L G KL R
Sbjct: 62 ILPGSKLVGR 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,738,962
Number of Sequences: 539616
Number of extensions: 4196362
Number of successful extensions: 10504
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 10477
Number of HSP's gapped (non-prelim): 41
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)