Query 040168
Match_columns 309
No_of_seqs 167 out of 316
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4046 RNase MRP and P, subun 100.0 3.2E-41 7E-46 306.2 10.2 189 53-309 15-207 (224)
2 PF01868 UPF0086: Domain of un 99.9 3E-27 6.5E-32 189.0 8.8 78 231-308 4-82 (89)
3 smart00538 POP4 A domain found 99.9 5.3E-27 1.1E-31 189.1 9.9 78 231-308 3-81 (92)
4 PRK03879 ribonuclease P protei 99.9 1.5E-25 3.2E-30 182.3 9.9 77 231-308 5-84 (96)
5 COG1588 POP4 RNase P/RNase MRP 99.8 1E-18 2.2E-23 142.1 7.5 77 231-308 7-84 (95)
6 PF14317 YcxB: YcxB-like prote 46.7 21 0.00046 24.7 2.7 23 262-284 25-47 (62)
7 PF09629 YorP: YorP protein; 41.8 18 0.0004 28.3 1.8 24 241-264 10-36 (71)
8 TIGR02603 CxxCH_TIGR02603 puta 35.3 47 0.001 28.0 3.5 29 257-285 70-98 (133)
9 PF11471 Sugarporin_N: Maltopo 34.9 47 0.001 25.3 3.1 20 15-34 34-53 (60)
10 PF02736 Myosin_N: Myosin N-te 32.2 87 0.0019 21.7 3.8 28 257-284 14-41 (42)
11 PF11623 DUF3252: Protein of u 23.8 1.6E+02 0.0035 22.3 4.2 36 239-275 3-38 (53)
12 KOG3407 Uncharacterized conser 20.1 1.1E+02 0.0023 27.6 3.0 27 13-39 112-138 (151)
No 1
>KOG4046 consensus RNase MRP and P, subunit POP4/p29 [RNA processing and modification]
Probab=100.00 E-value=3.2e-41 Score=306.18 Aligned_cols=189 Identities=35% Similarity=0.569 Sum_probs=163.1
Q ss_pred CCCCCCCCccccccCCCCCcccccCCccccccccccccccccCccccccCccccccccccCcccCCCCchHHHHHHHHhh
Q 040168 53 SSNIASSPHVTDRSAANTPKSLSKKGNFTFSGYTAFQDLEESGLTYSQLPQSIHENLLTTNVEPSSRGSTVDNVLHGLFQ 132 (309)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~l~~~~~~~~~~~~~v~~~l~~l~~ 132 (309)
.+++.+++.+.|+.+.++|.... +..+-.+|..|.+++.+|++.+|++++.+..+
T Consensus 15 ~~~dv~~~~~qq~~s~~~~~~~~---------------~~~d~i~~~~l~~~~d~~~~~kn~k~h~rk~~---------- 69 (224)
T KOG4046|consen 15 SDKDVSISESQQAKSLPNPKVKP---------------KDPDSIAYLKLLHPVDENLLLKNVKQHSRKET---------- 69 (224)
T ss_pred ccccccccccccccccCChhhcc---------------CCcchhhhhhhccchhHHHHHHhHHHHHHHHH----------
Confidence 35677767788888887652222 23367789999999999999999998833322
Q ss_pred CCChhhHhhhccccccccceeehhhhhccccccchhhhHHHHHhcccccCcCCHHHHHHCCCCCCCccccChhchHhHHH
Q 040168 133 NGDSAQKYLQGSRSMKIDNWILLDNYVQGRNVSTGSHIKALQIHSKRSRKHMSMKQLKRSGALDLPKDLQKFEKYKPMHE 212 (309)
Q Consensus 133 ~~~~a~k~~~g~~~~k~dk~i~Ldnyi~~~~~~~~a~aK~i~~~sK~s~k~LS~r~~kklGl~~lp~~~~kYe~f~pLhe 212 (309)
.++++.+.+|.|+++++|+++||+.+++|++|.|||+
T Consensus 70 -------------------------------------------~~~kk~k~lssRe~~~l~l~~ip~k~~ky~~f~Pmh~ 106 (224)
T KOG4046|consen 70 -------------------------------------------ASKKKSKTLSSREYKKLGLNTIPKKLQKYSDFKPMHE 106 (224)
T ss_pred -------------------------------------------HHhhhhccchHHHHHHhcCCCCcHHHHhHHhhchHHH
Confidence 2235556789999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCc--hhHhhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEE
Q 040168 213 MWKGYITQLLKSTGK--NQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMF 290 (309)
Q Consensus 213 LW~~Yi~eLL~~~~~--~~~~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f 290 (309)
||++||+|+|+.+.. .....+|++||||||.+.|..|+||.+||+.||||+||+++|.|+|.+|++++|||++|||.|
T Consensus 107 lW~~Yirell~~~~~~~q~~~a~LlkADyhGA~m~V~~Sk~~t~vgl~GI~l~etkh~fklitke~ri~~IPK~~cVf~~ 186 (224)
T KOG4046|consen 107 LWKSYIRELLKGTKGDPQLSLAKLLKADYHGALMFVTKSKNPTLVGLLGIVLLETKHFFKLITKENRIVVIPKKECVFAF 186 (224)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHhhhhccceEEEecccCCceeceeeEEeeecchhhhhhccCCeEEEEeccCcEEEE
Confidence 999999999998765 334567999999999999999999999999999999999999999999999999999999999
Q ss_pred EECC--EEEEEEcCccccCCC
Q 040168 291 RVDC--WKITLLGDKLTSRNL 309 (309)
Q Consensus 291 ~ld~--~~vtI~G~~L~~RP~ 309 (309)
.+++ +.|+|+|++|.+||.
T Consensus 187 ~~g~~~~~f~i~g~~f~~R~~ 207 (224)
T KOG4046|consen 187 ITGVQGLMFSIFGDHFGIRPA 207 (224)
T ss_pred EeCCccEEEEEecccccceeh
Confidence 9988 999999999999984
No 2
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=99.94 E-value=3e-27 Score=188.97 Aligned_cols=78 Identities=42% Similarity=0.628 Sum_probs=72.3
Q ss_pred hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEECCEE-EEEEcCccccCC
Q 040168 231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWK-ITLLGDKLTSRN 308 (309)
Q Consensus 231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld~~~-vtI~G~~L~~RP 308 (309)
.++|++||||||.++|++|+||++||++||||+||+|||.|+|++|++++|||++|+|.|++++.. |+|+|++|.+||
T Consensus 4 ~~~l~~~dl~G~~i~V~~s~~pslvG~~GiVV~ETknt~~I~t~~~~~~~IpK~~~vF~~~~~~~~~~~i~G~~l~~rp 82 (89)
T PF01868_consen 4 PQNLLKADLIGAKIEVVRSKNPSLVGIEGIVVDETKNTFVIVTEDGKVKTIPKAGSVFEFELPGGSKVTIYGSRLVGRP 82 (89)
T ss_dssp HHHHTTS--TT-EEEEEEESSCCCTTEEEEEEEEETTEEEEEETTEEEEEEESTTEEEEEEETTTEEEEEEGGGCSS-H
T ss_pred hhhhhhhhhcCCEEEEEEcCCCCccCCEEEEEEcccceEEEEecCCcEEEEecCCEEEEEEeCCCcEEEEEChhhccCh
Confidence 578999999999999999999999999999999999999999999999999999999999999988 999999999998
No 3
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=99.94 E-value=5.3e-27 Score=189.11 Aligned_cols=78 Identities=31% Similarity=0.508 Sum_probs=76.1
Q ss_pred hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEECC-EEEEEEcCccccCC
Q 040168 231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDC-WKITLLGDKLTSRN 308 (309)
Q Consensus 231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld~-~~vtI~G~~L~~RP 308 (309)
.++|++||||||.++|++|+||++||++||||+||+|||.|+|++|++++|||++|+|.|++++ ..|+|+|++|.+||
T Consensus 3 ~~~l~~~el~G~~v~Vv~s~~ps~vGi~GiVv~ET~nt~~I~t~~~~~~~IpK~~~vF~f~l~~~~~~~i~G~~l~~rp 81 (92)
T smart00538 3 PRKLLRHELIGLKVRVVASKNPSLVGIEGIVVDETRNTLKIETKEGRVKTVPKDGAVFEFELPGGEIVRIDGDRLVGRP 81 (92)
T ss_pred hhhhhhhhhcCCEEEEEEcCCCCccCcEEEEEEeeeeEEEEEeCCCcEEEEECCCeEEEEEECCCeEEEEECceeeeCc
Confidence 4689999999999999999999999999999999999999999999999999999999999987 99999999999999
No 4
>PRK03879 ribonuclease P protein component 1; Validated
Probab=99.93 E-value=1.5e-25 Score=182.27 Aligned_cols=77 Identities=29% Similarity=0.456 Sum_probs=74.1
Q ss_pred hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEE---CCEEEEEEcCccccC
Q 040168 231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRV---DCWKITLLGDKLTSR 307 (309)
Q Consensus 231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~l---d~~~vtI~G~~L~~R 307 (309)
.++|++||||||.++|++|+||++||++||||+||+|||.|+ .++++++|||++|+|.|++ ++..|+|+|++|.+|
T Consensus 5 ~~nl~~~eliGl~v~Vv~S~npslvGi~GiVv~ETknt~~I~-~~~~~~~VPK~~~iF~f~~~~~~~~~v~I~G~~l~~R 83 (96)
T PRK03879 5 PSNILRHELIGLKVEVVDSTNPSLVGIKGRVVDETRNTLVIE-TDGKEWMVPKDGATFEFELGRDDVVKVKVDGRLLVGR 83 (96)
T ss_pred HHHHHHHHhcCCEEEEEEcCCCCcccceEEEEEeceeEEEEE-cCCcEEEEeCCCeEEEEEEcCCCCeEEEEECceeecC
Confidence 468999999999999999999999999999999999999999 6788999999999999999 889999999999999
Q ss_pred C
Q 040168 308 N 308 (309)
Q Consensus 308 P 308 (309)
|
T Consensus 84 P 84 (96)
T PRK03879 84 P 84 (96)
T ss_pred c
Confidence 8
No 5
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1e-18 Score=142.07 Aligned_cols=77 Identities=26% Similarity=0.373 Sum_probs=73.1
Q ss_pred hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEEC-CEEEEEEcCccccCC
Q 040168 231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD-CWKITLLGDKLTSRN 308 (309)
Q Consensus 231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP 308 (309)
..+|+.+||+|..++|++|.||+++|++|-||+||+|||.|.+.+ +.++|||.+++|+|+.+ |..|.|.|+.|.+||
T Consensus 7 p~~i~~hEliGl~vrVv~s~~~s~vGI~G~VVdETkNtLvi~t~~-~~~~VpK~~~vfef~~~~G~~vkVdG~lL~~rP 84 (95)
T COG1588 7 PRNIIRHELIGLEVRVVRSTNPSYVGIEGRVVDETKNTLVIDTGS-REKVVPKDGAVFEFEGPDGEKVKVDGRLLLGRP 84 (95)
T ss_pred CCCcChHHhcCcEEEEEecCCCCccceeEEEEeeeccEEEEECCC-ceEEEecCcEEEEEEcCCCcEEEEcchhhhcCH
Confidence 357899999999999999999999999999999999999999976 88899999999999996 899999999999998
No 6
>PF14317 YcxB: YcxB-like protein
Probab=46.75 E-value=21 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.3
Q ss_pred EecccceeEEEcCCCceEEeeec
Q 040168 262 IRETTETFGMVTPDDKFHVVPKK 284 (309)
Q Consensus 262 V~ETknTF~Ivt~~n~vk~IPK~ 284 (309)
|.||++.|.|.+.++....|||.
T Consensus 25 v~e~~~~~~l~~~~~~~~~iPk~ 47 (62)
T PF14317_consen 25 VVETKDYFYLYLGKNQAFIIPKR 47 (62)
T ss_pred EEEeCCEEEEEECCCeEEEEEHH
Confidence 67899999998888889999996
No 7
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=41.76 E-value=18 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=14.6
Q ss_pred CCeEEEE---eeCCCCcccceeEEEec
Q 040168 241 GANIIVA---ECKTSALTGLSGIMIRE 264 (309)
Q Consensus 241 GA~I~Vv---~SknpslVGi~GIVV~E 264 (309)
|..|++- +.-||+.||++|.||.-
T Consensus 10 ~~~VeIN~NAkyg~P~~VG~kG~IIe~ 36 (71)
T PF09629_consen 10 GLEVEINSNAKYGCPHHVGRKGKIIEK 36 (71)
T ss_dssp T-EEEE-TT-TTTSTT--SSEEEEEEE
T ss_pred CCEEEEcCcccccCccccccccchhhh
Confidence 4455553 34689999999999863
No 8
>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type. This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).
Probab=35.33 E-value=47 Score=28.00 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=25.7
Q ss_pred ceeEEEecccceeEEEcCCCceEEeeecc
Q 040168 257 LSGIMIRETTETFGMVTPDDKFHVVPKKV 285 (309)
Q Consensus 257 i~GIVV~ETknTF~Ivt~~n~vk~IPK~g 285 (309)
+.|+++.|+...+.|...++..+.|++..
T Consensus 70 ~~G~~~~e~~~~~~l~~~~g~~~~i~~~~ 98 (133)
T TIGR02603 70 LSGIVASETADGVTVKMPGGVEQSVPREE 98 (133)
T ss_pred EEEEEEecCCCeEEEEcCCCcEEEEEHHH
Confidence 67899999999999999888888888864
No 9
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.95 E-value=47 Score=25.28 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 040168 15 MEALERRFATAKAEALQQVK 34 (309)
Q Consensus 15 ~~a~~~~~~~~~~~~~~~~~ 34 (309)
|++||+|++.|+.+.-+.+.
T Consensus 34 La~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 34 LAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999876555443
No 10
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=32.23 E-value=87 Score=21.73 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.6
Q ss_pred ceeEEEecccceeEEEcCCCceEEeeec
Q 040168 257 LSGIMIRETTETFGMVTPDDKFHVVPKK 284 (309)
Q Consensus 257 i~GIVV~ETknTF~Ivt~~n~vk~IPK~ 284 (309)
+.|-|+.+..+.+.+.+.+++.++|++.
T Consensus 14 v~g~I~~~~g~~vtV~~~~G~~~tv~~d 41 (42)
T PF02736_consen 14 VKGEIIEEEGDKVTVKTEDGKEVTVKKD 41 (42)
T ss_dssp EEEEEEEEESSEEEEEETTTEEEEEEGG
T ss_pred EEEEEEEEcCCEEEEEECCCCEEEeCCC
Confidence 5788999999999999999988888875
No 11
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=23.78 E-value=1.6e+02 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=24.1
Q ss_pred ccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCC
Q 040168 239 LHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPD 275 (309)
Q Consensus 239 LhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~ 275 (309)
|-|..|.|...+++ +-|.+|+|=+-|...-.++-++
T Consensus 3 lPG~~V~V~n~~~~-Y~~y~G~VQRvsdgkaaVLFEG 38 (53)
T PF11623_consen 3 LPGSTVRVKNPNDI-YYGYEGFVQRVSDGKAAVLFEG 38 (53)
T ss_dssp -TT-EEEE--TTST-TTT-EEEEEEEETTEEEEEEEE
T ss_pred cCCCEEEEeCCCCc-cchheEEEEEeeCCeEEEEecC
Confidence 45888888776665 5599999998888877777655
No 12
>KOG3407 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.08 E-value=1.1e+02 Score=27.63 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccc
Q 040168 13 RTMEALERRFATAKAEALQQVKHGKKR 39 (309)
Q Consensus 13 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ 39 (309)
.-|+-||||-+-|=|+++++.-+.++|
T Consensus 112 kKL~kLErrtQkAia~lIrerlke~~~ 138 (151)
T KOG3407|consen 112 KKLEKLERRTQKAIAELIRERLKEQKR 138 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 358999999999999999999777764
Done!