Query 040168
Match_columns 309
No_of_seqs 167 out of 316
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqk_A Conserved protein MTH11 99.9 7.3E-28 2.5E-32 194.7 8.9 79 231-309 8-87 (97)
2 1ts9_A Ribonuclease P protein 99.9 2.3E-27 7.8E-32 193.6 10.0 78 230-308 6-83 (102)
3 2zae_A Ribonuclease P protein 99.9 5.8E-28 2E-32 204.0 6.0 100 200-308 16-116 (127)
4 1v76_A RNAse P protein PH1771P 99.9 6E-27 2.1E-31 189.1 8.8 76 231-308 9-85 (96)
5 2heq_A YORP protein; SH3-like, 49.4 7.1 0.00024 30.3 1.7 24 241-264 15-41 (84)
6 2e70_A Transcription elongatio 41.6 43 0.0015 25.4 5.0 48 236-286 16-64 (71)
7 3bej_E Nuclear receptor coacti 30.3 20 0.0007 22.4 1.3 15 123-137 11-25 (26)
8 2kss_A Carotenogenesis protein 28.5 29 0.001 27.7 2.2 24 240-263 40-68 (106)
9 3plw_A Recombination enhanceme 26.4 16 0.00055 32.4 0.4 24 3-26 4-27 (186)
10 2jz2_A SSL0352 protein; SH3-li 25.3 1.1E+02 0.0036 23.1 4.6 36 239-275 3-38 (66)
No 1
>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1
Probab=99.95 E-value=7.3e-28 Score=194.68 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=72.6
Q ss_pred hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEEC-CEEEEEEcCccccCCC
Q 040168 231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD-CWKITLLGDKLTSRNL 309 (309)
Q Consensus 231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP~ 309 (309)
.++|++||||||.|+|++|+||++||++||||+||+|||.|+|++|++++|||++|+|.|+++ |..|+|+|++|.+||-
T Consensus 8 ~~~l~~~dl~G~~v~Vv~S~~pslvGi~GiVV~ET~ntf~I~t~~~~~k~VPK~~~vF~f~~~dg~~~~i~G~~l~~Rp~ 87 (97)
T 1oqk_A 8 PRNIFRHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFRTPQGELVEIDGRALVARPE 87 (97)
T ss_dssp -----CCCCSSCEEEEEECSSTTTTTCEEECCEEETTEEEEEETTTEEEEEECTTCEEEEEETTTEEEEECSSSCCCCST
T ss_pred HHHhhHHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEEEEcCCCcEEEEECCCEEEEEEECCCcEEEEECceeccChH
Confidence 468999999999999999999999999999999999999999999999999999999999998 8999999999999993
No 2
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=99.94 E-value=2.3e-27 Score=193.57 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=76.1
Q ss_pred HhhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEECCEEEEEEcCccccCC
Q 040168 230 LAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVDCWKITLLGDKLTSRN 308 (309)
Q Consensus 230 ~~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld~~~vtI~G~~L~~RP 308 (309)
..++|++||||||.|+|++|+||++||++||||+||+|||.|+| +|++++|||++|+|.|++++..|+|+|++|.+||
T Consensus 6 ~~~~L~~adl~G~~v~Vv~S~~pslVGi~GiVV~ETkntf~I~t-~~~~k~VPK~~~vF~f~l~~~~~~I~G~~l~~Rp 83 (102)
T 1ts9_A 6 QGVELIARDWIGLMVEVVESPNHSEVGIKGEVVDETQNTLKIMT-EKGLKVVAKRGRTFRVWYKGKIMRIKGDLINFRP 83 (102)
T ss_dssp HHHHHHHSCCTTCEEEEEECSSGGGTTCEEEEEEECSSEEEEEE-SSSEEEEECTTCEEEEEETTEEEEEEGGGTCSCH
T ss_pred hhhHHhhhhhcCCEEEEEEcCCCCccCcEEEEEEeccceEEEEe-CCcEEEEECCCEEEEEEECCEEEEEECceeccCh
Confidence 46799999999999999999999999999999999999999999 8999999999999999999999999999999998
No 3
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=99.94 E-value=5.8e-28 Score=203.98 Aligned_cols=100 Identities=23% Similarity=0.390 Sum_probs=88.1
Q ss_pred cccChhchHhHHHHHHHHHHHHhccCCchhHhhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceE
Q 040168 200 DLQKFEKYKPMHEMWKGYITQLLKSTGKNQLAQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFH 279 (309)
Q Consensus 200 ~~~kYe~f~pLheLW~~Yi~eLL~~~~~~~~~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk 279 (309)
.+++|+.+ ++.+|..|-...=. -..++|++||||||.|+|++|+||++||++||||+||+|||.|+| |+++
T Consensus 16 ~~~~~~~~--~~~~w~~~~~~~~~-----~t~~~L~~aDl~Ga~v~Vv~S~~pslVGi~GiVV~ETknTf~I~t--~~~k 86 (127)
T 2zae_A 16 SQGSYQEI--IGRTWIFRGAHRGR-----VTRRNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG--DRIW 86 (127)
T ss_dssp --CTTGGG--TTCGGGGTTTCCSC-----CCTTTTTTSCCTTCEEEEEEESSGGGTTCEEEEEEEETTEEEEES--SSEE
T ss_pred CCCchhhh--hhhhhhhhhccccc-----cCHHHHHHHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEEEEc--CCEE
Confidence 45689998 59999987332212 125689999999999999999999999999999999999999999 6999
Q ss_pred EeeecceEEEEEEC-CEEEEEEcCccccCC
Q 040168 280 VVPKKVSVFMFRVD-CWKITLLGDKLTSRN 308 (309)
Q Consensus 280 ~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP 308 (309)
+|||++|+|.|+++ +..|+|+|++|.+||
T Consensus 87 ~VPK~~~vF~f~l~dg~~v~I~G~~l~~RP 116 (127)
T 2zae_A 87 KVPKDVSIFEFEADDGTKIKIPGERLVGRP 116 (127)
T ss_dssp EEESTTEEEEEECTTSCEEEEEGGGGCSCT
T ss_pred EEECCCeEEEEEeCCCeEEEEECceeccCH
Confidence 99999999999998 899999999999999
No 4
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=99.94 E-value=6e-27 Score=189.12 Aligned_cols=76 Identities=29% Similarity=0.504 Sum_probs=73.9
Q ss_pred hhhhhhhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCCCceEEeeecceEEEEEEC-CEEEEEEcCccccCC
Q 040168 231 AQCLLSADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPDDKFHVVPKKVSVFMFRVD-CWKITLLGDKLTSRN 308 (309)
Q Consensus 231 ~~kLlkaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~n~vk~IPK~gsVF~f~ld-~~~vtI~G~~L~~RP 308 (309)
.++|++||||||.|+|++|+||++||++||||+||+|||.|+| |++++|||++|+|.|+++ +..|+|+|++|.+||
T Consensus 9 ~~~l~~~dl~G~~v~Vv~S~~pslVGi~GiVV~ET~ntf~I~t--~~~~~VPK~~~vF~f~~~~~~~v~i~G~~l~~Rp 85 (96)
T 1v76_A 9 RRNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLVIAG--DRIWKVPKDVSIFEFEADDGTKIKIPGERLVGRP 85 (96)
T ss_dssp TTGGGTSCCTTCEEEEEEESSGGGTTCEEEEEEECSSEEEEES--SSEEEEESTTEEEEEECTTSCEEEEEGGGGCSCH
T ss_pred HHHhhhhhhcCCEEEEEEcCCCCccCcEEEEEEeccceEEEEc--CCEEEEECCCEEEEEEECCCcEEEEECceeccCh
Confidence 5799999999999999999999999999999999999999999 699999999999999998 899999999999998
No 5
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=49.43 E-value=7.1 Score=30.30 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=18.4
Q ss_pred CCeEEE---EeeCCCCcccceeEEEec
Q 040168 241 GANIIV---AECKTSALTGLSGIMIRE 264 (309)
Q Consensus 241 GA~I~V---v~SknpslVGi~GIVV~E 264 (309)
|..|++ .++-||+.||++|.||.-
T Consensus 15 gl~VeIN~NAkygcPhhVGrkGkIie~ 41 (84)
T 2heq_A 15 GLAVEINNNARYGCPHHVGRKGKIIEH 41 (84)
T ss_dssp TCEEEECTTCTTTSTTCCSSEEEEEEE
T ss_pred CCEEEEcCCcccCCccccccccchhhh
Confidence 555555 357899999999999864
No 6
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.61 E-value=43 Score=25.43 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred hhhccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCC-CceEEeeecce
Q 040168 236 SADLHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPD-DKFHVVPKKVS 286 (309)
Q Consensus 236 kaDLhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~-n~vk~IPK~gs 286 (309)
...|+|-.|.|.+-+ +-|..|||.+-|..+..|.-.. ++..+|||..-
T Consensus 16 rd~liGktV~I~kGp---yKG~~GiVkd~t~~~~RVELhs~~K~VtV~r~~l 64 (71)
T 2e70_A 16 DNELIGQTVRISQGP---YKGYIGVVKDATESTARVELHSTCQTISVDRQRL 64 (71)
T ss_dssp TTSSTTSEEEECSST---TTTCEEEEEEECSSCEEEEESSSCCEEEECTTTE
T ss_pred ccccCCCEEEEeccC---CCCeEEEEEECCCCeEEEEecCCceEEEEEhhhc
Confidence 456889888887654 6899999999999999987543 67778888754
No 7
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=30.31 E-value=20 Score=22.43 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=12.0
Q ss_pred HHHHHHHHhhCCChh
Q 040168 123 VDNVLHGLFQNGDSA 137 (309)
Q Consensus 123 v~~~l~~l~~~~~~a 137 (309)
-++|||.|+|+|.-+
T Consensus 11 kHkILHrLLQ~~sP~ 25 (26)
T 3bej_E 11 RHKILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHHHHcCCCC
Confidence 468999999998644
No 8
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=28.48 E-value=29 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.5
Q ss_pred cCCeEEEEeeC-----CCCcccceeEEEe
Q 040168 240 HGANIIVAECK-----TSALTGLSGIMIR 263 (309)
Q Consensus 240 hGA~I~Vv~Sk-----npslVGi~GIVV~ 263 (309)
+|+.++|+.+. +|.+.|..||||-
T Consensus 40 ig~~v~iv~~s~~~si~~rflg~sgivv~ 68 (106)
T 2kss_A 40 IGAKVKVVPHSEDGTISQRFLGQTGIVVG 68 (106)
T ss_dssp TTCEEECCSSCSSSCCCTTTTTCEEEEEE
T ss_pred ecceEEEeccccCCccChhhcCccceEEE
Confidence 57778888753 4677899999984
No 9
>3plw_A Recombination enhancement function protein; HNH nuclease, DNAse, hydrolase; 1.40A {Enterobacteria phage P1}
Probab=26.43 E-value=16 Score=32.42 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHH
Q 040168 3 TNTSTEDQRKRTMEALERRFATAK 26 (309)
Q Consensus 3 ~~~~~~~~~~~~~~a~~~~~~~~~ 26 (309)
|+--|+.||+|..+|-+|.+|.++
T Consensus 4 ~~~~~e~~r~~~~~~~~r~~~~~~ 27 (186)
T 3plw_A 4 IEQKIEQCRKWQKAARERAIARQR 27 (186)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999998886
No 10
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=25.29 E-value=1.1e+02 Score=23.13 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=28.4
Q ss_pred ccCCeEEEEeeCCCCcccceeEEEecccceeEEEcCC
Q 040168 239 LHGANIIVAECKTSALTGLSGIMIRETTETFGMVTPD 275 (309)
Q Consensus 239 LhGA~I~Vv~SknpslVGi~GIVV~ETknTF~Ivt~~ 275 (309)
|=|..|.|...+++ |-|.+|+|=+-|...-.++-++
T Consensus 3 lPG~~V~V~np~~~-Yy~y~G~VQRvsdgkaaVLFEG 38 (66)
T 2jz2_A 3 FPGATVRVTNVDDT-YYRFEGLVQRVSDGKAAVLFEN 38 (66)
T ss_dssp CTTCEEEECCTTST-TBTCEEEEEEEETTEEEEEEES
T ss_pred cCCCEEEEeCCCCc-ccceeEEEEEecCCcEEEEecC
Confidence 45888888776665 5599999999888888877766
Done!