BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040169
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 131/469 (27%), Positives = 227/469 (48%), Gaps = 77/469 (16%)
Query: 33 ESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEA 92
E+ +++V + T + G V+ QA+ EG K + AG++ MDLK I +A
Sbjct: 67 ENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAK 126
Query: 93 IKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNE 142
+ +K AR VG +AN + I + E M++VG EG+ + + + + E
Sbjct: 127 VVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETE 186
Query: 143 LKFLRGMKLNWGAVSSFFIDDETQ-------------------------------TCKQP 171
++ + GM+ + G +S +F+ + + ++P
Sbjct: 187 VEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKP 246
Query: 172 LFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESN 231
L I+AEDVE E +L+++++ K VK P F + K ++QD+A+LTGG V++ +
Sbjct: 247 LLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLG 306
Query: 232 SLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLE 288
L + LG K+V I + I+ G+G +A+IE R Q+R I+ +TSDY+ + L+
Sbjct: 307 MKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQ 366
Query: 289 ERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFA 342
ER+ L+ G +++V GG T + R+ +ALNA +AA++ GI+
Sbjct: 367 ERVAKLAGGVAVIRV-GGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGG--------- 416
Query: 343 SFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATG 402
V + A+ L+ L + G+ ++++AL+ P+ IA G
Sbjct: 417 ---------------VALVQGAKV--LEGLSGANSDQDAGIAIIRRALEAPMRQIAENAG 459
Query: 403 VDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDA 451
VDG+ VA K+ E + G++ EY D+ K G+ DP K+V L+DA
Sbjct: 460 VDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDA 508
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 225/467 (48%), Gaps = 84/467 (17%)
Query: 39 FMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLK 98
+++V + T + G V+ QA+ EG K + AG + + LK I A EA +K
Sbjct: 72 LLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIK 131
Query: 99 CRA----------RVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRG 148
A V +AN D + L+ + MEKVGKEG+ + + + + ELKF+ G
Sbjct: 132 ALAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEG 190
Query: 149 MKLNWGAVSSFFIDD-ET-------------------------------QTCKQPLFIIA 176
+ + G +S +F+ + ET QT K PL IIA
Sbjct: 191 YQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGK-PLLIIA 249
Query: 177 EDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAE-----SN 231
EDVE E +L+++++ + VK P F + K +++D+A +TGG V++ E N
Sbjct: 250 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 309
Query: 232 SLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERL 291
+ L+ LG + V I +E I+GG G + DIE R ++ ++ + S+Y + L+ERL
Sbjct: 310 ATLSM--LGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERL 367
Query: 292 LNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFD 345
L+ G +++V G +T K R +ALNA +AA+E GI+P
Sbjct: 368 AKLAGGVAVIRV-GAATETELKEKKHRFEDALNATRAAVEEGIVPGG------------- 413
Query: 346 LFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDG 405
+ ++R + L+ + T G +++++AL+ P IA G +G
Sbjct: 414 ------GVTLLRAISAVEELIKKLEGDEAT------GAKIVRRALEEPARQIAENAGYEG 461
Query: 406 SAVAEKLL-EQDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDA 451
S + +++L E NP G++ A GE+VD+++ GI DP K+ L +A
Sbjct: 462 SVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNA 508
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIY 87
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK I
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 88 MAFEAIKGHLKCR----------ARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
A A LK A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNKDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 221/466 (47%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLK---- 83
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 84 DEIYMAFEAIKG------HLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
+ +A E +K K A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNADQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIY 87
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK I
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 88 MAFEAIKGHLKCR----------ARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
A A LK A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 218/466 (46%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIY 87
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK I
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 88 MAFEAIKGHLKCR----------ARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
A A LK A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEAALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNADQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIY 87
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK I
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 88 MAFEAIKGHLKCR----------ARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
A A LK A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 221/466 (47%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLK---- 83
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 84 DEIYMAFEAIKG------HLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
+ +A E +K K A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 219/466 (46%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIY 87
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK I
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 88 MAFEAIKGHLKCR----------ARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
A A LK A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 221/466 (47%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLK---- 83
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 84 DEIYMAFEAIKG------HLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
+ +A E +K K A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 221/466 (47%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLK---- 83
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 84 DEIYMAFEAIKG------HLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
+ +A E +K K A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 218/466 (46%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIY 87
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK I
Sbjct: 62 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 121
Query: 88 MAFEAIKGHLKCR----------ARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
A A LK A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 122 KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 181
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 182 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 241
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 242 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 301
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 302 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 361
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 362 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 415
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 416 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 454
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 455 VLNCGEKPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 499
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 218/466 (46%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIY 87
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK I
Sbjct: 62 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 121
Query: 88 MAFEAIKGHLKCR----------ARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
A A LK A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 122 KAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 181
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 182 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 241
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 242 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 301
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 302 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 361
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ AL+A +AA+E G++
Sbjct: 362 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEAALHATRAAVEEGVVAGG----- 415
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 416 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 454
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 455 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 499
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 220/466 (47%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLK---- 83
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 84 DEIYMAFEAIKG------HLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
+ +A E +K K A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E + +++ I K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 220/466 (47%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLK---- 83
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK
Sbjct: 61 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120
Query: 84 DEIYMAFEAIKG------HLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
+ +A E +K K A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E + +++ I K VK P F + K ++QD+A LTGG V+
Sbjct: 241 KAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 361 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 414
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 415 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 453
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 454 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 498
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 220/466 (47%), Gaps = 81/466 (17%)
Query: 31 IEESFLTGFMQQVKNPTCEPDEY---GIKYLPVMHQAMCIEGRKVLEAGVDAMDLK---- 83
+E+ F Q VK + ++ G V+ QA+ EG K + AG++ MDLK
Sbjct: 62 LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 121
Query: 84 DEIYMAFEAIKG------HLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEE 137
+ +A E +K K A+VG +AN D+ + L+ E M+KVGKEG+ + D
Sbjct: 122 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 181
Query: 138 KKKNELKFLRGMKLNWGAVSSFFID-------------------------------DETQ 166
++EL + GM+ + G +S +FI+ +
Sbjct: 182 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 241
Query: 167 TCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVV 226
+PL IIAEDVE E + +++ + K VK P F + K ++QD+A LTGG V+
Sbjct: 242 KAGKPLLIIAEDVEGEALATAVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 301
Query: 227 TAESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283
+ E L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+
Sbjct: 302 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 361
Query: 284 IKLLEERLLNLSCGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVC 337
+ L+ER+ L+ G ++KV G +T K R+ +AL+A +AA+E G++
Sbjct: 362 REKLQERVAKLAGGVAVIKV-GAATEVEMKEKKARVEDALHATRAAVEEGVVAGG----- 415
Query: 338 WQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTI 397
+A+IRV L L+ + +G+++ +A++ P+ I
Sbjct: 416 --------------GVALIRV-------ASKLADLRGQNEDQNVGIKVALRAMEAPLRQI 454
Query: 398 ASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKLGIFDPMKL 443
G + S VA + D + GY+ A EY ++I +GI DP K+
Sbjct: 455 VLNCGEEPSVVANTVKGGDG-NYGYNAATEEYGNMIDMGILDPTKV 499
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 130/463 (28%), Positives = 214/463 (46%), Gaps = 80/463 (17%)
Query: 39 FMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAI----- 93
+++V T + G V+ QA+ EG + + AG + + LK I A E +
Sbjct: 30 LVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLL 89
Query: 94 KG--HLKCRARVGRTAA--NEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGM 149
KG ++ + ++ TAA D+ I L+ E M+KVG EG+ + + +L+ GM
Sbjct: 90 KGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGM 149
Query: 150 KLNWGAVSSFFIDD------------------ETQTCK-------------QPLFIIAED 178
+ + G +S +F+ D + T K +PL IIAED
Sbjct: 150 RFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAED 209
Query: 179 VEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLK 238
VE E +L++++I + K VK P F + K ++QD+A+LTGG V++ E L
Sbjct: 210 VEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENAD 269
Query: 239 ---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLS 295
LG ++VV+ +E I+ G+G I R Q+R I+ S SDY+ + L+ERL L+
Sbjct: 270 LSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLA 329
Query: 296 CGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVY 349
G ++K G +T + RI +A+ KAA+E GI+ V
Sbjct: 330 GGVAVIK-AGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGG--------------VT 374
Query: 350 FLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVA 409
L A P L+ + T G +++ AL+ P+ IA +G++ VA
Sbjct: 375 LLQAA-------PTLDELKLEGDEAT------GANIVKVALEAPLKQIAFNSGLEPGVVA 421
Query: 410 EKLLEQDNP-DVGYDPARGEYVDVIKLGIFDPMKLVIKELDDA 451
EK+ ++ P G + G Y D++ G+ DP+K+ L +A
Sbjct: 422 EKV--RNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNA 462
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 130/463 (28%), Positives = 214/463 (46%), Gaps = 80/463 (17%)
Query: 39 FMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAI----- 93
+++V T + G V+ QA+ EG + + AG + + LK I A E +
Sbjct: 72 LVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLL 131
Query: 94 KG--HLKCRARVGRTAA--NEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGM 149
KG ++ + ++ TAA D+ I L+ E M+KVG EG+ + + +L+ GM
Sbjct: 132 KGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGM 191
Query: 150 KLNWGAVSSFFIDD------------------ETQTCK-------------QPLFIIAED 178
+ + G +S +F+ D + T K +PL IIAED
Sbjct: 192 RFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAED 251
Query: 179 VEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLK 238
VE E +L++++I + K VK P F + K ++QD+A+LTGG V++ E L
Sbjct: 252 VEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENAD 311
Query: 239 ---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLS 295
LG ++VV+ +E I+ G+G I R Q+R I+ S SDY+ + L+ERL L+
Sbjct: 312 LSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLA 371
Query: 296 CGALIVKVTGGST------KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVY 349
G ++K G +T + RI +A+ KAA+E GI+ V
Sbjct: 372 GGVAVIK-AGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGG--------------VT 416
Query: 350 FLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVA 409
L A P L+ + T G +++ AL+ P+ IA +G++ VA
Sbjct: 417 LLQAA-------PTLDELKLEGDEAT------GANIVKVALEAPLKQIAFNSGLEPGVVA 463
Query: 410 EKLLEQDNP-DVGYDPARGEYVDVIKLGIFDPMKLVIKELDDA 451
EK+ ++ P G + G Y D++ G+ DP+K+ L +A
Sbjct: 464 EKV--RNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNA 504
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAE 229
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V++ E
Sbjct: 58 KPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE 117
Query: 230 SNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKL 286
L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+ +
Sbjct: 118 IGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREK 177
Query: 287 LEERLLNLSCGALIV 301
L+ER+ L+ G ++
Sbjct: 178 LQERVAKLAGGVAVI 192
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAE 229
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V++ E
Sbjct: 62 KPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE 121
Query: 230 SNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKL 286
L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+ +
Sbjct: 122 LGMKLEKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREK 181
Query: 287 LEERLLNLSCG 297
L+ER+ L+ G
Sbjct: 182 LQERVAKLAGG 192
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAE 229
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V++ E
Sbjct: 62 KPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE 121
Query: 230 SNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKL 286
L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+ +
Sbjct: 122 LGMKLEKATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREK 181
Query: 287 LEERLLNLSCG 297
L+ER+ L+ G
Sbjct: 182 LQERVAKLAGG 192
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
Apical Domain
Length = 194
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 34/194 (17%)
Query: 142 ELKFLRGMKLNWGAVSSFFIDD-------------------------------ETQTCKQ 170
EL+F G+ + G +S++F+ D + +
Sbjct: 1 ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60
Query: 171 PLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAES 230
PL I+AEDVE E +L+++ I + K VK P F + K ++DLAV+TGG VV ++
Sbjct: 61 PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120
Query: 231 NSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLL 287
+L + LGS + VV+ ++ VI+ G G+ + R + LR+ I S SD++ + L
Sbjct: 121 GMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKL 180
Query: 288 EERLLNLSCGALIV 301
ERL L+ G ++
Sbjct: 181 GERLAKLAGGVAVI 194
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising
Residues 191-376, Mutant With Ala 262 Replaced With Leu
And Ile 267 Replaced With Met
Length = 203
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAE 229
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V++ E
Sbjct: 72 KPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE 131
Query: 230 SNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKL 286
L + LG K VVI + I+ G G +A I+ R Q+R I+ +TSDY+ +
Sbjct: 132 IGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREK 191
Query: 287 LEERLLNLSCG 297
L+ER+ L+ G
Sbjct: 192 LQERVAKLAGG 202
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel
From Xenorhapdus Nematophila
Length = 201
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 168 CKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVT 227
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LT G V++
Sbjct: 65 ASKPLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVIS 124
Query: 228 AESNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEI 284
E L + LG K VVI + I+ G G + I R Q+R I+ STSDY+
Sbjct: 125 EEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQIEESTSDYDR 184
Query: 285 KLLEERLLNLSCG 297
+ L+ER+ L+ G
Sbjct: 185 EKLQERVAKLAGG 197
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345
Length = 155
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAE 229
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V++ E
Sbjct: 55 KPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE 114
Query: 230 SNSLLARLK---LGSCKEVVILDNEMVILGGSGSQADIEKR 267
L + LG K VVI + I+ G G +A I+ R
Sbjct: 115 IGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 155
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
Length = 146
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAE 229
+PL IIAEDVE E +L+++ + K VK P F + K ++QD+A LTGG V++ E
Sbjct: 55 KPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE 114
Query: 230 SNSLLARLK---LGSCKEVVILDNEMVILGG 257
L + LG K VVI + I+ G
Sbjct: 115 IGMELEKATLEDLGQAKRVVINKDTTTIIDG 145
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical
Domain) Comprising Residues 192-336
Length = 145
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 166 QTCKQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWV 225
QT K PL IIAEDVE E +L+++++ + VK P F + K +++D+A +TGG V
Sbjct: 51 QTGK-PLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTV 109
Query: 226 VTAE-----SNSLLARLKLGSCKEVVILDNEMVILGG 257
++ E N+ L+ LG + V I +E I+GG
Sbjct: 110 ISEELGFKLENATLSM--LGRAERVRITKDETTIVGG 144
>pdb|3KQ4|A Chain A, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|C Chain C, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|E Chain E, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 393
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 24/168 (14%)
Query: 15 KDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPD--EYGIKYLPVM----------H 62
KDI K S K+KD +I + + TG Q + T EP E+ K M H
Sbjct: 180 KDIVEKISMKIKDNGIIGDIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILNEIKQGKFH 239
Query: 63 QAMCI-------EGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRAR---VGRTAANEDK 112
M I +G+ L+ E+ + G A V T N+ +
Sbjct: 240 NPMSIAQILPSLKGKTYLDVPQVTCSPDHEVQPTLPSNPGPGPTSASNITVIYTINNQLR 299
Query: 113 RIDVLLTEVMEKVGKEG--LFIIYDEEKKKNELKFLRGMKLNWGAVSS 158
+++L E + K G L ++ +E ++KN + +WG V S
Sbjct: 300 GVELLFNETINVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVS 347
>pdb|2PMV|A Chain A, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|B Chain B, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|C Chain C, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|D Chain D, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
Length = 399
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 24/168 (14%)
Query: 15 KDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPD--EYGIKYLPVM----------H 62
KDI K S K+KD +I + + TG Q + T EP E+ K M H
Sbjct: 186 KDIVEKISMKIKDNGIIGDIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILNEIKQGKFH 245
Query: 63 QAMCI-------EGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRAR---VGRTAANEDK 112
M I +G+ L+ E+ + G A V T N+ +
Sbjct: 246 NPMSIAQILPSLKGKTYLDVPQVTCSPDHEVQPTLPSNPGPGPTSASNITVIYTINNQLR 305
Query: 113 RIDVLLTEVMEKVGKEG--LFIIYDEEKKKNELKFLRGMKLNWGAVSS 158
+++L E + K G L ++ +E ++KN + +WG V S
Sbjct: 306 GVELLFNETINVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVS 353
>pdb|1APA|A Chain A, X-Ray Structure Of A Pokeweed Antiviral Protein, Coded By
A New Genomic Clone, At 0.23 Nm Resolution. A Model
Structure Provides A Suitable Electrostatic Field For
Substrate Binding
Length = 266
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 34 SFLTGFMQQVKNPTCEPDEYGIKYLP---VMHQAMCIEGRKVLEAGVDAMDLKDEIYMAF 90
+F+ Q K+PT + YGI LP + + + + + + M ++ +Y+
Sbjct: 23 TFMKSIHNQAKDPTLKC--YGIPMLPNTNLTPKYLLVTLQDSSLKTITLMLKRNNLYVMG 80
Query: 91 EAIKGHLKCRARVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLR--- 147
A + KCR + + +N +R DV+ T + G I YD E K R
Sbjct: 81 YADTYNGKCRYHIFKDISNTTERNDVMTTLCPNPSSRVGKNINYDSSYPALEKKVGRPRS 140
Query: 148 ----GMK-LNWGAVSSFFIDDETQTCKQPLFIIAEDVEVEVA 184
G++ LN G + +D T+ + ++A + E A
Sbjct: 141 QVQLGIQILNSGIGKIYGVDSFTEKTEAEFLLVAIQMVSEAA 182
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 50 PDEYGIKYLPVMHQAMCIEGRKVLEAGV---DAMDLKDEIYMAFE 91
PD G+K+ V+ ++ R +AGV DA+D++D ++ A+E
Sbjct: 367 PDITGLKHXVVLGESASRVKRAAQKAGVTYSDALDVRDAVHKAYE 411
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 381 IGVQL-LQQALKMP-VCTIASATGVDGSAVAEKLLEQDNPDVG 421
IG+ L +++ ++P + T+ GVDG AVA +LL + N +VG
Sbjct: 314 IGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVG 356
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 280 SDYEIKLLE-ERLLNLSCGALIVKVTGGSTKNKRIVNALNAVKAAME------------- 325
+D+EI+ E E+L + S ALIV T + NALNA+K A+E
Sbjct: 228 NDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLXIISDEVY 287
Query: 326 GGIIPENSSQVCWQPFASFDLFVY 349
G +P S P+ + ++ Y
Sbjct: 288 GAFVPNFKSIYSVVPYNTXLVYSY 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,870,649
Number of Sequences: 62578
Number of extensions: 510298
Number of successful extensions: 1422
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 55
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)