Query 040169
Match_columns 459
No_of_seqs 117 out of 1211
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12852 groEL chaperonin GroE 100.0 9.2E-89 2E-93 732.4 42.6 419 5-458 48-515 (545)
2 PRK12849 groEL chaperonin GroE 100.0 2.3E-88 4.9E-93 727.8 43.1 418 5-458 47-513 (542)
3 PRK00013 groEL chaperonin GroE 100.0 7.1E-88 1.5E-92 724.0 42.5 419 5-458 47-514 (542)
4 PRK14104 chaperonin GroEL; Pro 100.0 6.1E-88 1.3E-92 725.0 41.8 419 5-458 48-515 (546)
5 PTZ00114 Heat shock protein 60 100.0 1E-87 2.2E-92 725.3 42.3 419 5-458 59-530 (555)
6 TIGR02348 GroEL chaperonin Gro 100.0 2.5E-87 5.5E-92 718.2 42.3 418 5-458 46-512 (524)
7 PRK12851 groEL chaperonin GroE 100.0 3.3E-87 7.1E-92 719.1 41.6 418 5-458 48-514 (541)
8 CHL00093 groEL chaperonin GroE 100.0 6.2E-87 1.3E-91 715.9 42.0 417 5-458 47-515 (529)
9 PLN03167 Chaperonin-60 beta su 100.0 2.7E-87 5.8E-92 725.0 39.5 419 5-458 103-571 (600)
10 cd03344 GroEL GroEL_like type 100.0 2.2E-86 4.7E-91 710.1 42.6 418 5-458 45-511 (520)
11 PRK12850 groEL chaperonin GroE 100.0 1.6E-86 3.5E-91 714.2 41.6 418 5-458 48-514 (544)
12 KOG0356 Mitochondrial chaperon 100.0 2.3E-78 4.9E-83 623.5 30.1 425 3-458 41-527 (550)
13 COG0459 GroL Chaperonin GroEL 100.0 3.3E-74 7.2E-79 612.9 26.3 401 5-458 48-504 (524)
14 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6.2E-72 1.3E-76 594.7 33.7 366 5-458 49-473 (484)
15 TIGR02347 chap_CCT_zeta T-comp 100.0 3.5E-70 7.6E-75 586.6 35.1 366 5-458 53-516 (531)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.1E-70 4.5E-75 587.4 32.8 372 5-458 45-506 (515)
17 TIGR02342 chap_CCT_delta T-com 100.0 5E-70 1.1E-74 584.4 32.8 372 5-458 46-507 (517)
18 cd03343 cpn60 cpn60 chaperonin 100.0 2E-69 4.4E-74 580.0 34.2 366 5-458 52-507 (517)
19 TIGR02339 thermosome_arch ther 100.0 2.5E-69 5.3E-74 579.5 34.9 366 5-458 53-510 (519)
20 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.8E-69 3.8E-74 581.5 32.9 368 5-458 45-516 (527)
21 TIGR02345 chap_CCT_eta T-compl 100.0 4.6E-69 1E-73 577.6 33.1 376 5-458 54-510 (522)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6.3E-69 1.4E-73 577.2 33.8 366 5-458 60-518 (526)
23 TIGR02343 chap_CCT_epsi T-comp 100.0 1.2E-68 2.6E-73 575.3 33.7 366 5-458 64-522 (532)
24 TIGR02340 chap_CCT_alpha T-com 100.0 1E-68 2.2E-73 576.6 33.2 368 5-458 49-520 (536)
25 TIGR02346 chap_CCT_theta T-com 100.0 1E-68 2.2E-73 575.7 32.5 367 5-458 55-510 (531)
26 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1E-68 2.2E-73 569.7 31.7 366 5-458 53-471 (480)
27 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.4E-67 5.2E-72 563.8 35.5 365 5-458 52-504 (517)
28 TIGR02344 chap_CCT_gamma T-com 100.0 2E-67 4.4E-72 565.4 33.2 366 5-458 53-512 (525)
29 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2.7E-67 5.8E-72 564.2 33.8 377 5-458 53-510 (522)
30 cd00309 chaperonin_type_I_II c 100.0 6.8E-67 1.5E-71 553.6 35.6 366 5-458 45-456 (464)
31 cd03341 TCP1_theta TCP-1 (CTT 100.0 5.3E-67 1.1E-71 555.4 33.4 365 5-458 45-462 (472)
32 PTZ00212 T-complex protein 1 s 100.0 2.4E-66 5.1E-71 557.8 34.5 365 5-458 64-516 (533)
33 TIGR02341 chap_CCT_beta T-comp 100.0 7.1E-66 1.5E-70 552.3 34.3 365 5-458 53-505 (519)
34 KOG0361 Chaperonin complex com 100.0 7E-66 1.5E-70 510.3 21.8 378 4-458 56-513 (543)
35 KOG0363 Chaperonin complex com 100.0 1.7E-60 3.6E-65 469.5 23.4 370 5-458 57-509 (527)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.7E-59 5.9E-64 496.0 31.8 365 5-458 26-474 (485)
37 KOG0358 Chaperonin complex com 100.0 7E-59 1.5E-63 459.9 19.5 372 5-458 63-524 (534)
38 KOG0360 Chaperonin complex com 100.0 9.9E-54 2.1E-58 433.0 15.9 367 5-458 56-526 (545)
39 KOG0364 Chaperonin complex com 100.0 5.1E-52 1.1E-56 417.2 16.1 366 5-458 56-511 (527)
40 KOG0359 Chaperonin complex com 100.0 1.4E-51 3E-56 413.6 15.7 366 5-458 54-505 (520)
41 KOG0362 Chaperonin complex com 100.0 5.8E-48 1.3E-52 393.3 27.8 366 6-458 64-511 (537)
42 KOG0357 Chaperonin complex com 100.0 2.2E-46 4.8E-51 366.6 12.9 308 22-458 63-386 (400)
43 cd03333 chaperonin_like chaper 99.8 5.5E-20 1.2E-24 175.3 15.8 168 110-326 19-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.7 3.5E-17 7.7E-22 161.7 15.8 170 110-327 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 97.1 0.0018 4E-08 75.7 10.0 125 110-248 333-510 (1598)
46 COG0459 GroL Chaperonin GroEL 91.0 0.28 6E-06 53.6 4.8 79 169-260 270-355 (524)
47 CHL00093 groEL chaperonin GroE 46.0 9.1 0.0002 41.9 1.0 44 2-46 26-75 (529)
48 PF09644 Mg296: Mg296 protein; 27.2 1.5E+02 0.0033 25.6 5.1 61 342-408 50-114 (121)
49 PF00725 3HCDH: 3-hydroxyacyl- 23.2 1.7E+02 0.0037 23.7 4.9 29 61-89 7-36 (97)
50 KOG0357 Chaperonin complex com 23.1 29 0.00063 35.9 0.2 65 5-82 65-130 (400)
51 COG2054 Uncharacterized archae 22.8 1.3E+02 0.0028 28.7 4.4 31 301-336 4-39 (212)
52 KOG3411 40S ribosomal protein 22.7 94 0.002 27.9 3.2 50 72-121 82-138 (143)
53 COG3286 Uncharacterized protei 21.5 2.2E+02 0.0047 27.3 5.5 45 280-325 11-62 (204)
54 PRK12850 groEL chaperonin GroE 20.8 41 0.00089 37.1 0.8 42 2-44 27-74 (544)
55 PF07278 DUF1441: Protein of u 20.0 1.6E+02 0.0034 27.1 4.2 28 381-408 101-128 (152)
No 1
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.2e-89 Score=732.38 Aligned_cols=419 Identities=33% Similarity=0.557 Sum_probs=396.0
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|+++|| ++||+|+|++++|++||+++||||||+++||++||++|.+|+++|+||+.|++
T Consensus 48 ~iTnDG~TIlk~i~~~~~---------~~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~ 118 (545)
T PRK12852 48 RITKDGVTVAKEIELEDK---------FENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKR 118 (545)
T ss_pred eEeccHHHHHHHccCCCc---------ccChHHHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||++|.+.++++|+++++ +|++|++.++.+++++++|+.+++.++.|.++.|++..+++++++|+.|++|
T Consensus 119 G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g 198 (545)
T PRK12852 119 GIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRG 198 (545)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCC
Confidence 999999999999999885 7788888899999999999999998889999998887679999999999999
Q ss_pred ccccccccc-ccccc------------------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD-ETQTC------------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~-~~~~~------------------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|.++ +++.. +.||+|++++|++++++.|+.|++++.++|++||+
T Consensus 199 ~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~ 278 (545)
T PRK12852 199 YLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKA 278 (545)
T ss_pred ccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEec
Confidence 999998776 44322 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|+|+++|+++++|||++|||+++++..+. ++++++||+|+.|+++++++++++++++++.+..|+++|+.+++++.+
T Consensus 279 ~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~ 358 (545)
T PRK12852 279 PGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTS 358 (545)
T ss_pred CCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999953222 234778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
.|++++|+|||+||+|+++||+|||+|+ ++|+++||+|++|+++++|+|||||++|
T Consensus 359 ~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e------------------- 419 (545)
T PRK12852 359 DYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVAL------------------- 419 (545)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
++++ ..|++++..++++|+|+++|++||+.||++||+|||+|+.+++++|++.+++++|||+.+|+++||++.
T Consensus 420 ----~~~s---~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~ 492 (545)
T PRK12852 420 ----LRAK---KAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAK 492 (545)
T ss_pred ----HHHH---HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhC
Confidence 9999 999998766889999999999999999999999999999999999998767889999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||.++|++|+++|+++
T Consensus 493 GI~Dp~~vk~~al~~A~e~a~~i 515 (545)
T PRK12852 493 GIIDPAKVVRTALQDAASVAGLL 515 (545)
T ss_pred cCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-88 Score=727.81 Aligned_cols=418 Identities=35% Similarity=0.541 Sum_probs=394.0
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +||++|+|++++|++||+++||||||+++||++||++|.+|+++|+||..|++
T Consensus 47 ~ITnDGaTIlk~i~~~hp---------~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~ 117 (542)
T PRK12849 47 TITKDGVSIAKEIELEDP---------FENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKR 117 (542)
T ss_pred eEeccHHHHHHHcccCCc---------cHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 579999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||++|++.++++|+++++ +|++|+++++.+++++++|+.+++.++.|.++.|++..|++++++|++|++|
T Consensus 118 G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g 197 (542)
T PRK12849 118 GIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRG 197 (542)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecC
Confidence 999999999999999876 7788888899999999999999998888999999998878999999999999
Q ss_pred ccccccccc--------ccccc-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD--------ETQTC-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~--------~~~~~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|.++ ++.++ ++||+|++++|++++++.|+.|++++.++|++||.
T Consensus 198 ~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~ 277 (542)
T PRK12849 198 YLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKA 277 (542)
T ss_pred cccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeC
Confidence 999998543 22222 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|+|+++|+++++|||.+|||+++++..+. ++++++||+|+.|++++++++++++++++++++.|+++|+++++++++
T Consensus 278 ~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~ 357 (542)
T PRK12849 278 PGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTS 357 (542)
T ss_pred CCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999953222 344788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
+|++++|+||++||+|+++||++||+|+ ++|+++||||++|+++++|+|||||++|
T Consensus 358 ~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e------------------- 418 (542)
T PRK12849 358 DYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVAL------------------- 418 (542)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
+++| ..|++++..++++|+|+++|++||+.||++||+|||+|+.+++.+|++.+ +++|||+.+|+++||++.
T Consensus 419 ----~~ls---~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~ 490 (542)
T PRK12849 419 ----LRAA---KALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAA 490 (542)
T ss_pred ----HHHH---HHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhc
Confidence 9999 99999885589999999999999999999999999999999999998765 589999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||.++|++|+++|+++
T Consensus 491 GV~Dp~~vk~~al~~A~e~A~~i 513 (542)
T PRK12849 491 GIIDPVKVTRSALQNAASVAGLL 513 (542)
T ss_pred cCccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.1e-88 Score=723.99 Aligned_cols=419 Identities=34% Similarity=0.523 Sum_probs=392.4
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| ++|++|+|++++|++||+++||||||+++|+++||+++.+|+++|+||..|++
T Consensus 47 ~ITnDG~tIlk~i~~~hp---------~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~ 117 (542)
T PRK00013 47 TITKDGVTVAKEIELEDP---------FENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKR 117 (542)
T ss_pred eEeccHHHHHHHccCCCc---------hhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 579999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||+.|.+.++++|+++++ +|++|+++++.+++++++|+..++.++.|.++.+.+..+++++++|++|++|
T Consensus 118 G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g 197 (542)
T PRK00013 118 GIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRG 197 (542)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCC
Confidence 999999999999999886 7788888899999999999999998888888866656679999999999999
Q ss_pred ccccccccc--------ccccc-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD--------ETQTC-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~--------~~~~~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|.++ ++.++ +.||+|++++|++++++.|+.|++++++++++||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~ 277 (542)
T PRK00013 198 YLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKA 277 (542)
T ss_pred cccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEec
Confidence 999998543 22222 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|+|+++|+++|+|||++|||+++++..+. ++++++||+|+.|+++++++++++++++++++..|+++|+++++++.+
T Consensus 278 ~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~ 357 (542)
T PRK00013 278 PGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTS 357 (542)
T ss_pred CCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999853221 344778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
+|++++|+||++||+|+++||+|||+|+ ++|+++||||++|+++++|+|||||++|
T Consensus 358 ~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e------------------- 418 (542)
T PRK00013 358 DYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVAL------------------- 418 (542)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
++++ ..|+++...++++|+|+++|++||+.||++||+|||+|+.+++.+|++.+++++|||+.+|+++||++.
T Consensus 419 ----~~~s---~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~ 491 (542)
T PRK00013 419 ----LRAA---PALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEA 491 (542)
T ss_pred ----HHHH---HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhc
Confidence 9999 999988445899999999999999999999999999999999999988666789999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||+++|++|+++|+++
T Consensus 492 gI~Dp~~vk~~al~~A~~~a~~i 514 (542)
T PRK00013 492 GIIDPTKVTRSALQNAASVAGLL 514 (542)
T ss_pred cCeecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 4
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=6.1e-88 Score=725.04 Aligned_cols=419 Identities=32% Similarity=0.546 Sum_probs=395.0
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|++++| +|||+|+|++++|++||+++||||||+||||++||++|.+++++|+||+.|++
T Consensus 48 ~iTnDG~tIlk~i~~~d~---------~~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~ 118 (546)
T PRK14104 48 RITKDGVTVAKEIELEDK---------FENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKR 118 (546)
T ss_pred eEeccHHHHHHHhcCCCc---------ccChHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHH
Confidence 479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||++|.+.+++.|+++++ +|++|+++++.+++++++|+.++|.+|.|.++.+++..+++++++|++|++|
T Consensus 119 G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g 198 (546)
T PRK14104 119 GIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRG 198 (546)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCC
Confidence 999999999999999886 7788888899999999999999999899999988877678999999999999
Q ss_pred ccccccccc-ccccc------------------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD-ETQTC------------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~-~~~~~------------------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|||.++ +++.. +.||+|++++|++++++.|+.|++++.+++++||+
T Consensus 199 ~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~ 278 (546)
T PRK14104 199 YISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKA 278 (546)
T ss_pred CCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEec
Confidence 999999655 33211 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|+|+++|+++++|||++|||+++++..+. ++++++||+|+.|++++++++++++|++++++..|+++|+++++++.+
T Consensus 279 ~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~ 358 (546)
T PRK14104 279 PGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTS 358 (546)
T ss_pred cCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999984332 234778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
+|++++|+||+++|+|+++||+|||+|+ ++|+++||||++++++++|+|||||++|
T Consensus 359 ~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e------------------- 419 (546)
T PRK14104 359 DYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVAL------------------- 419 (546)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
++++ ..|+++...++++++|+++|++||+.||++||+|||+|+.+++.+|++.+++++|||+.+|+++||++.
T Consensus 420 ----~~~s---~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~ 492 (546)
T PRK14104 420 ----LRAS---EQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSK 492 (546)
T ss_pred ----HHHH---HHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhc
Confidence 9999 999988655899999999999999999999999999999999999987667789999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||.++|++|+++|+++
T Consensus 493 GI~Dp~~vk~~al~~A~~~a~~i 515 (546)
T PRK14104 493 GIIDPTKVVRTAIQNAASVAALL 515 (546)
T ss_pred CCEEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1e-87 Score=725.31 Aligned_cols=419 Identities=38% Similarity=0.590 Sum_probs=393.8
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|+++|| +|||+|+|++++|++||+++||||||+||||++||++|.+++++|+||..|++
T Consensus 59 ~ITnDG~TIlk~i~~~~p---------~~~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~ 129 (555)
T PTZ00114 59 KITKDGVTVAKAIEFSDR---------FENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKR 129 (555)
T ss_pred EEeeChHHHHHhcCcCCc---------chhHHHHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||++|.+.++++|+++++ +|++|+++++.+++++++|+.+++.+|.|.+++|+++.+++++++|++|++|
T Consensus 130 G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g 209 (555)
T PTZ00114 130 GIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRG 209 (555)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecc
Confidence 999999999999999876 7788888899999999999999998888999999999877799999999999
Q ss_pred ccccccccc-cc-------ccc-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD-ET-------QTC-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~-~~-------~~~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|.++ ++ .++ ++||+|++++|++++++.|+.|++++.+++++||.
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~ 289 (555)
T PTZ00114 210 YISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKA 289 (555)
T ss_pred ccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEec
Confidence 999998543 22 222 79999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeec-ccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAE-SNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKAST 279 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~-~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~ 279 (459)
|+||+.++++|+|||++|||+++++. .+. ++++++||+|++|++.+++++++++++++++|+.|+.+|+.++++++
T Consensus 290 ~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~ 369 (555)
T PTZ00114 290 PGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTT 369 (555)
T ss_pred CCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999986 221 24477899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHH
Q 040169 280 SDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLA 354 (459)
Q Consensus 280 ~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~ 354 (459)
++|++++|+||+++|+|+++||+|||+|+ ++|+++||||++|+++++|+|||||++|
T Consensus 370 ~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e------------------ 431 (555)
T PTZ00114 370 SEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVAL------------------ 431 (555)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHH------------------
Confidence 99999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhhhhccccccchhhHHhhc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccc
Q 040169 355 VIRVLMYPRARYYDLDKLQT---TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVD 431 (459)
Q Consensus 355 ~~~~~~~~s~~~~~L~~~~~---~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d 431 (459)
+++| ..|++++. .++++|+|+++|++||+.||++||+|||+|+.+++++|++.+++++|||+.+|+++|
T Consensus 432 -----~~~s---~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d 503 (555)
T PTZ00114 432 -----LRAS---KLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVN 503 (555)
T ss_pred -----HHHH---HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEee
Confidence 9999 99998863 479999999999999999999999999999999999998756778999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 432 VIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 432 ~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|++.|||||+.||+++|++|+++|+++
T Consensus 504 ~~~~GI~Dp~~vk~~al~~A~~~A~~i 530 (555)
T PTZ00114 504 MFEAGIIDPTKVVRSALVDAASVASLM 530 (555)
T ss_pred HHhCCCEeCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986
No 6
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.5e-87 Score=718.20 Aligned_cols=418 Identities=33% Similarity=0.540 Sum_probs=391.6
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
.+||||+||+|+|++.|| ++|++|+|++++|++||+++||||||+++||++||++|.+++++|+||..|++
T Consensus 46 ~iTnDG~tIlk~i~~~hp---------~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~ 116 (524)
T TIGR02348 46 TITKDGVTVAKEIELEDK---------FENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKR 116 (524)
T ss_pred eEeccHHHHHHHccCCCh---------hhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 579999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||++|.+.++++|+++++ +|++|+++++++++++++|+.+++.++.|.++.|++..+++++++|+.|++|
T Consensus 117 G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g 196 (524)
T TIGR02348 117 GIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRG 196 (524)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCC
Confidence 999999999999999876 7778888899999999999999998888999888888788999999999999
Q ss_pred ccccccccc-c-------cccc-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD-E-------TQTC-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~-~-------~~~~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|.++ + +.++ ++||+|++++|++++++.|+.|++++++++++||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~ 276 (524)
T TIGR02348 197 YISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKA 276 (524)
T ss_pred CCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEEC
Confidence 999998543 2 2222 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|+|+++|+++++|||++|||++++...++ ++++++||+|+.|++.++++++++++++++++..|+.+|+++++++.+
T Consensus 277 ~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~ 356 (524)
T TIGR02348 277 PGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTS 356 (524)
T ss_pred CCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999943221 244788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
+|++++|+||++||+|++++|++||+|+ ++|+++||+|++|+++++|||||||++|
T Consensus 357 ~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e------------------- 417 (524)
T TIGR02348 357 DYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVAL------------------- 417 (524)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
+++| ..|++....++++++|+++|++||+.||++||+|||+|+.+++++|++. +.++|||+.+|+++||++.
T Consensus 418 ----~~~s---~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~ 489 (524)
T TIGR02348 418 ----LRAA---AALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEA 489 (524)
T ss_pred ----HHHH---HHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhc
Confidence 9999 9998843458899999999999999999999999999999999999876 3459999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||.++|++|+++|+++
T Consensus 490 gI~Dp~~vk~~al~~A~~~a~~i 512 (524)
T TIGR02348 490 GIIDPTKVTRSALQNAASIAGLL 512 (524)
T ss_pred cCEEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 7
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.3e-87 Score=719.07 Aligned_cols=418 Identities=34% Similarity=0.540 Sum_probs=391.3
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| ++|++|+|++++|++||+++||||||+++||++||++|.+||++|+||+.|++
T Consensus 48 ~ITnDG~tIlk~i~~~hp---------~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~ 118 (541)
T PRK12851 48 TITNDGVTIAKEIELEDK---------FENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKR 118 (541)
T ss_pred eEecCHHHHHHHccCCCc---------hhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||+.|++.++++|+++++ +|++|+++++.|++++++|+.+++.++.|.++.+....+++++++|++|++|
T Consensus 119 G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g 198 (541)
T PRK12851 119 GIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRG 198 (541)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCC
Confidence 999999999999999886 7778888899999999999999998888888765555578999999999999
Q ss_pred ccccccccc-cc-------ccc-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD-ET-------QTC-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~-~~-------~~~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|.++ ++ .++ ++||+|++++|++++++.|+.|+++|.+++++||.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~ 278 (541)
T PRK12851 199 YLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKA 278 (541)
T ss_pred ccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEec
Confidence 999986654 33 222 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|+|++.|+++++|||++|||+++++..++ ++++++||+|+.|++.+++|++++++++++++..|+++|++++.++.+
T Consensus 279 p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~ 358 (541)
T PRK12851 279 PGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTS 358 (541)
T ss_pred CccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999953322 234778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
+|++++|+||++||+|++++|++||+|+ ++|+++||||++++++++|+|||||++|
T Consensus 359 ~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e------------------- 419 (541)
T PRK12851 359 DYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL------------------- 419 (541)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
+++| ..|++++..++++|+|+++|++||+.||++||+|||+|+.+++++|++.+ .++|||+.+|+++||++.
T Consensus 420 ----~~~s---~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~ 491 (541)
T PRK12851 420 ----LRAV---KALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQ 491 (541)
T ss_pred ----HHHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhc
Confidence 9999 99998876689999999999999999999999999999999999998764 479999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||.++|++|+++|+++
T Consensus 492 GIiDp~~vk~~al~~A~e~A~~i 514 (541)
T PRK12851 492 GVIDPVKVVRTALQNAASVAGLL 514 (541)
T ss_pred cCEecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=6.2e-87 Score=715.92 Aligned_cols=417 Identities=30% Similarity=0.496 Sum_probs=389.8
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
.+||||+||+|+|++.|| ++|++++|++++|.+|++++||||||++|||++||++|.+++++|+||+.|++
T Consensus 47 ~ITnDG~tIlk~i~~~hp---------~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~ 117 (529)
T CHL00093 47 QIVNDGVTIAKEIELEDH---------IENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKR 117 (529)
T ss_pred eEeccHHHHHHHccCcCH---------HHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||++|.+.+++.|+++++ ||++|+++++.|++++++|+.+++.+|.|.++.|+...+++++++|++|++|
T Consensus 118 G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g 197 (529)
T CHL00093 118 GIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKG 197 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCc
Confidence 999999999999999886 7888999999999999999999998888888877766678999999999999
Q ss_pred ccccccccc-ccc-------cc------------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEec
Q 040169 155 AVSSFFIDD-ETQ-------TC------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVK 202 (459)
Q Consensus 155 ~~~~~~~~~-~~~-------~~------------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk 202 (459)
|.+|+|.++ +++ ++ +.||+|++++|+++++++|++|+.++.+++++||
T Consensus 198 ~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr 277 (529)
T CHL00093 198 FISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVR 277 (529)
T ss_pred cCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEe
Confidence 999999655 432 11 7899999999999999999999999999999999
Q ss_pred CCCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcC
Q 040169 203 PPEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKAST 279 (459)
Q Consensus 203 ~~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~ 279 (459)
+|+++++|+++++|||++|||++++++.+. .+++++||+|+.|++.++++++++ .++++++..|+++++++++.++
T Consensus 278 ~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 356 (529)
T CHL00093 278 APGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIAD 356 (529)
T ss_pred cCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999999999999853322 234788999999999999999998 6788999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHH
Q 040169 280 SDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLA 354 (459)
Q Consensus 280 ~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~ 354 (459)
++|++++|+||+++|+|++++|++||+|+ ++|+++||+|++|+++++|+|||||++|
T Consensus 357 ~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e------------------ 418 (529)
T CHL00093 357 SSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATL------------------ 418 (529)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHH------------------
Confidence 99999999999999999999999999998 8999999999999999999999999999
Q ss_pred HhhhhccccccchhhHHhhc--CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCccccc
Q 040169 355 VIRVLMYPRARYYDLDKLQT--TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDV 432 (459)
Q Consensus 355 ~~~~~~~~s~~~~~L~~~~~--~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~ 432 (459)
+++| ..|++++. .++++|+|+++|++||+.||++||+|||+|+.+++++|++. ++++|||+.+|+++||
T Consensus 419 -----~~~s---~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~ 489 (529)
T CHL00093 419 -----VHLS---ENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNM 489 (529)
T ss_pred -----HHHH---HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccch
Confidence 9999 99999864 48999999999999999999999999999999999999865 4589999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHHHhhc
Q 040169 433 IKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 433 ~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
++.|||||+.||.++|++|+++|+++
T Consensus 490 ~~~GI~Dp~~vk~~al~~A~e~a~~i 515 (529)
T CHL00093 490 YEAGIIDPAKVTRSALQNAASIASMI 515 (529)
T ss_pred HhccCEEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986
No 9
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.7e-87 Score=725.03 Aligned_cols=419 Identities=30% Similarity=0.499 Sum_probs=393.6
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|++.|| ++|++|+|++++|++||+++||||||++|||++||++|.+++++|+||+.|++
T Consensus 103 ~ITnDG~TIlk~i~~~hP---------~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~ 173 (600)
T PLN03167 103 KIVNDGVTVAKEVELEDP---------VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173 (600)
T ss_pred eEeccHHHHHHHcccCCc---------hhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 579999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEeccc
Q 040169 85 EIYMAFEAIKGHLKCRAR---------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGA 155 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g~ 155 (459)
||++|.+.+++.|+++++ +|++|+++++.|++++++|+.++|.+|.|.+++|++..|++++++|++|++||
T Consensus 174 G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~ 253 (600)
T PLN03167 174 GIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGY 253 (600)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCc
Confidence 999999999999998875 78889988999999999999999988899999999998888999999999999
Q ss_pred cccccccc-ccccc------------------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCC
Q 040169 156 VSSFFIDD-ETQTC------------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPP 204 (459)
Q Consensus 156 ~~~~~~~~-~~~~~------------------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~ 204 (459)
.||||.++ +++.. +.||+|++++|++++++.|++|++++.+++++||.|
T Consensus 254 ~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p 333 (600)
T PLN03167 254 ISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAP 333 (600)
T ss_pred cCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcc
Confidence 99999876 54322 799999999999999999999999999999999999
Q ss_pred CccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCH
Q 040169 205 EFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSD 281 (459)
Q Consensus 205 ~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~ 281 (459)
+|+++|+++|+|||++|||++++++.+. ++.+++||+|++|++.+++++++++.++++.++.|+.+|+.+++++.++
T Consensus 334 ~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~ 413 (600)
T PLN03167 334 GFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQD 413 (600)
T ss_pred cCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCH
Confidence 9999999999999999999999964322 2347889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHHh
Q 040169 282 YEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAVI 356 (459)
Q Consensus 282 ~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~ 356 (459)
|++++|++||++|+|++++|++||+|+ ++|+++||||++|+|+++|+|||||++|
T Consensus 414 ~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~e-------------------- 473 (600)
T PLN03167 414 YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL-------------------- 473 (600)
T ss_pred HHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHH--------------------
Confidence 999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhccccccchhhHHhhc-CCchhH-HHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCccccccc
Q 040169 357 RVLMYPRARYYDLDKLQT-TSLGGK-IGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIK 434 (459)
Q Consensus 357 ~~~~~~s~~~~~L~~~~~-~~~~e~-~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~ 434 (459)
++++ ..|++++. ..+++| +|+++|++||+.||++||+|||+|+.+++++|++++++++|||+.+|+++||++
T Consensus 474 ---l~ls---~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~ 547 (600)
T PLN03167 474 ---LRLA---SKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMA 547 (600)
T ss_pred ---HHHH---HHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHh
Confidence 9999 99998874 356666 569999999999999999999999999999998666778999999999999999
Q ss_pred cCcccchHHHHHHHHHHHHHHhhc
Q 040169 435 LGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 435 ~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
.|||||+.||+++|++|+++|+++
T Consensus 548 ~GI~Dp~~Vk~~al~~A~~~A~~i 571 (600)
T PLN03167 548 AGIIDPTKVVRCCLEHAASVAKTF 571 (600)
T ss_pred ccCeecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 10
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.2e-86 Score=710.10 Aligned_cols=418 Identities=37% Similarity=0.593 Sum_probs=393.5
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
.+||||+||+|+|++.|| ++|++|+|++++|++||+++||||||+++||++||+++.+++++|+||..|++
T Consensus 45 ~iTnDG~tIlk~i~~~hp---------~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~ 115 (520)
T cd03344 45 KITKDGVTVAKEIELEDP---------FENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKR 115 (520)
T ss_pred EEEecHHHHHHHcccCCc---------chhHHHHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 479999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||+.|.+.++++|+++++ +|++|.++++.+++++++|+..++.++.|.+++|++..|++++++|++|++|
T Consensus 116 G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g 195 (520)
T cd03344 116 GIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRG 195 (520)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCC
Confidence 999999999999999876 7788888899999999999999998888999999998777899999999999
Q ss_pred ccccccccc--------ccccc-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD--------ETQTC-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~--------~~~~~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|..+ ++.++ ++||+|++++|++++++.|+.|++++.+++++||.
T Consensus 196 ~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~ 275 (520)
T cd03344 196 YLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKA 275 (520)
T ss_pred CCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeC
Confidence 999998433 22222 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|++++.++++++|||.+|||+++++..+. .+++++||+|+.|++++++++++++++++++++.|+++|+++++++++
T Consensus 276 ~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~ 355 (520)
T cd03344 276 PGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTS 355 (520)
T ss_pred CCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999954221 244678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
+|++++|+||+++|+|+++||+|||+|+ ++|+++||+|++|+++++|+|||||++|
T Consensus 356 ~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e------------------- 416 (520)
T cd03344 356 DYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVAL------------------- 416 (520)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
++++ ..|++++..++++|+|+++|++||+.||++||+|||+|+.+++++|++.++ ++|||+.+|+++||++.
T Consensus 417 ----~~~s---~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~ 488 (520)
T cd03344 417 ----LRAS---PALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEA 488 (520)
T ss_pred ----HHHH---HHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhc
Confidence 9999 999998777899999999999999999999999999999999999988755 89999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||.++|++|+++|+++
T Consensus 489 gV~Dp~~vk~~~l~~A~~~a~~i 511 (520)
T cd03344 489 GIIDPTKVVRSALQNAASVASLL 511 (520)
T ss_pred cCeecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 11
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-86 Score=714.16 Aligned_cols=418 Identities=33% Similarity=0.542 Sum_probs=390.7
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| .+|++|+|++++|++||+++||||||+++||++||++|.+|+++|+||..|++
T Consensus 48 ~ITnDG~tIlk~i~i~hp---------~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~ 118 (544)
T PRK12850 48 RITKDGVTVAKEIELEDK---------FENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKR 118 (544)
T ss_pred eEeccHHHHHHHhcCCCh---------hhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHH
Confidence 579999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEecc
Q 040169 85 EIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWG 154 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g 154 (459)
||++|++.++++|+++++ +|++|.++++.+++++++|+.+++.++.|.++.+....+++++++|++|++|
T Consensus 119 G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g 198 (544)
T PRK12850 119 GIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRG 198 (544)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCc
Confidence 999999999999999876 6778888899999999999999998888888866656678999999999999
Q ss_pred ccccccccc--------ccccc-----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecC
Q 040169 155 AVSSFFIDD--------ETQTC-----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKP 203 (459)
Q Consensus 155 ~~~~~~~~~--------~~~~~-----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~ 203 (459)
|.+|+|.++ ++.++ +.||+|++++|++++++.|+.|++++.+++++||.
T Consensus 199 ~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~ 278 (544)
T PRK12850 199 YLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKA 278 (544)
T ss_pred cCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeC
Confidence 999998543 22222 89999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHhCCeEeeecccc---ccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCC
Q 040169 204 PEFEENCKGIMQDLAVLTGGWVVTAESNS---LLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKASTS 280 (459)
Q Consensus 204 ~~~~~~r~~~ledla~~tG~~v~~~~~~~---~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~ 280 (459)
|+|+++|+++++|||++|||+++++..++ ++++++||+|+.|++.++++++++++++++++..|+++|+++++++.+
T Consensus 279 p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~ 358 (544)
T PRK12850 279 PGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTS 358 (544)
T ss_pred CCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999853221 244678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcccchhHHHHHHHHHH
Q 040169 281 DYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPFASFDLFVYFLSLAV 355 (459)
Q Consensus 281 ~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~~~~~~~~~~~~~~~ 355 (459)
+|++++|+||++||+|+++||+|||+|+ ++|+++||||++|+++++|||||||++|
T Consensus 359 ~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e------------------- 419 (544)
T PRK12850 359 DYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVAL------------------- 419 (544)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHH-------------------
Confidence 9999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCeeEecCCCcccccccc
Q 040169 356 IRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDVGYDPARGEYVDVIKL 435 (459)
Q Consensus 356 ~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~Gid~~~g~~~d~~~~ 435 (459)
++++ ..|+++...++++|+|+++|++||+.||++||+|||+|+.+++++|++.+ .++|||+.+|+++||++.
T Consensus 420 ----~~~s---~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~ 491 (544)
T PRK12850 420 ----LRAR---SALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEA 491 (544)
T ss_pred ----HHHH---HHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhc
Confidence 9999 99998854589999999999999999999999999999999999998764 479999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHHhhc
Q 040169 436 GIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 436 gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||||+.||.++|++|+++|+++
T Consensus 492 gI~Dp~~vk~~al~~A~~~a~~i 514 (544)
T PRK12850 492 GIIDPAKVTRTALQDAASIAALL 514 (544)
T ss_pred cCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-78 Score=623.50 Aligned_cols=425 Identities=36% Similarity=0.577 Sum_probs=394.0
Q ss_pred CccCCCcHHHHHhhcc-cCCCCCcCCccc-c---------cchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHH
Q 040169 3 PSRLSWSRNYAAKDIE-LKKSPKVKDCSV-I---------EESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRK 71 (459)
Q Consensus 3 ~~~~t~d~~ti~~~i~-~~~p~~~~~~~~-i---------~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~ 71 (459)
-+||.|-|-.++ ++ --.+|||||||+ | ++|++|+++++++..+++++||||||+++|+.+|..++.+
T Consensus 41 ~~TlgpKgrnVi--ieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~ 118 (550)
T KOG0356|consen 41 AVTLGPKGRNVI--IEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFE 118 (550)
T ss_pred hhhccCCcceEE--cccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHH
Confidence 345555554444 33 233456666666 4 9999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhh----------heeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccc
Q 040169 72 VLEAGVDAMDLKDEIYMAFEAIKGHLKCRAR----------VGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKN 141 (459)
Q Consensus 72 li~~Gi~P~~I~~G~~~a~~~~l~~L~~~s~----------vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d 141 (459)
-+.+|.+|..|++|+.+|.+.+.+.|+++++ ||++|+++|..+++++.+|+.++|++|.|.++.|.++.|
T Consensus 119 ~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~d 198 (550)
T KOG0356|consen 119 KVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLED 198 (550)
T ss_pred HHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCcccc
Confidence 9999999999999999999999999999987 888999999999999999999999999999999999999
Q ss_pred eeEEEEeEEEeccccccccccc-ccccc------------------------------CCCEEEEeccchhhHHHHHHHh
Q 040169 142 ELKFLRGMKLNWGAVSSFFIDD-ETQTC------------------------------KQPLFIIAEDVEVEVAGSLILD 190 (459)
Q Consensus 142 ~~~~v~G~~~~~g~~~~~~~~~-~~~~~------------------------------~~~l~ii~~~i~~~al~~l~~n 190 (459)
++++++||.||+||+||||+++ ++.++ .+||+|+++|++.++|.+|++|
T Consensus 199 elev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlN 278 (550)
T KOG0356|consen 199 ELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLN 278 (550)
T ss_pred chhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhh
Confidence 9999999999999999999988 76554 7899999999999999999999
Q ss_pred hhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccc-cccc---cccceeeeEEEEecceEEEEcCCCChhhHHH
Q 040169 191 RICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESN-SLLA---RLKLGSCKEVVILDNEMVILGGSGSQADIEK 266 (459)
Q Consensus 191 ~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~-~~l~---~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ 266 (459)
++++.+++|+||.|+||++|++.+.|++.+||++++..+.+ ++++ +++||.|+++.++++.+.++.+.+++++++.
T Consensus 279 kLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~ 358 (550)
T KOG0356|consen 279 KLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEG 358 (550)
T ss_pred hhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999987654 3443 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCCcccCCCcccccCcc
Q 040169 267 RCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGGIIPENSSQVCWQPF 341 (459)
Q Consensus 267 ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~gvVpGGG~~e~~~~~ 341 (459)
||+|++..++.+.++|++++++||+++|+||+++|.+||.|+ +++|++||||++++|+++|+|||||+++
T Consensus 359 rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~al----- 433 (550)
T KOG0356|consen 359 RIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTAL----- 433 (550)
T ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHH-----
Confidence 999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCCCCe
Q 040169 342 ASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDNPDV 420 (459)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~~~~ 420 (459)
++|+ ..|+.+.. .+-.++.|++++.+||..|..+||.|||.|+..+++|++. .++
T Consensus 434 ------------------l~~~---~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~ 489 (550)
T KOG0356|consen 434 ------------------LRAI---PVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDY 489 (550)
T ss_pred ------------------HHhh---hhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhh
Confidence 9999 99988875 4778999999999999999999999999999999999983 389
Q ss_pred eEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 421 GYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 421 Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||..+|+|+||++.||+||.+|.++++.+|.++|..+
T Consensus 490 gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll 527 (550)
T KOG0356|consen 490 GYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLL 527 (550)
T ss_pred hhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999865
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-74 Score=612.92 Aligned_cols=401 Identities=29% Similarity=0.444 Sum_probs=359.9
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|||++++|.+||+++||||||++|||++||++|.+++++|+||+.|++
T Consensus 48 ~iTnDG~tIlkeielehp-------------~akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~ 114 (524)
T COG0459 48 TITNDGVTILKEIELEHP-------------GAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKR 114 (524)
T ss_pred EEecCcceehhhhhccCc-------------hhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 589999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------------heeccCCCchhHHHHHHHHHHHhcc-----CccEEEEcCCCccceeE
Q 040169 85 EIYMAFEAIKGHLKCRAR---------------VGRTAANEDKRIDVLLTEVMEKVGK-----EGLFIIYDEEKKKNELK 144 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------------vA~~ss~~d~~la~li~~av~~vg~-----~g~I~i~~g~~~~d~~~ 144 (459)
||++|.+.++++|+++++ +++.+.++++.|++++++|+.+++. ++.+.++..++..++++
T Consensus 115 G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~ 194 (524)
T COG0459 115 GYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELE 194 (524)
T ss_pred HHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceE
Confidence 999999999999999876 2334455569999999999999998 77777776666668999
Q ss_pred EEEeEEEecccccccccc-c--ccccc----------------------CCCEEEEeccchhhHHHHHHHhhhcccccEE
Q 040169 145 FLRGMKLNWGAVSSFFID-D--ETQTC----------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFC 199 (459)
Q Consensus 145 ~v~G~~~~~g~~~~~~~~-~--~~~~~----------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~ 199 (459)
+++||+||+||.+|||.+ . ++.++ ..||++++++.+.+++.+++.|.+++.++++
T Consensus 195 vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~v 274 (524)
T COG0459 195 VVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVV 274 (524)
T ss_pred EEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999998877 3 66655 5678888899998999999999999999999
Q ss_pred EecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHHHhc-
Q 040169 200 LVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVILDNEMVILGGSGSQADIEKRCEQLRSAIKAS- 278 (459)
Q Consensus 200 ~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~- 278 (459)
+|+.|+|+++|+.+|+|++++|++++.+++.+ .....+|.|+.+.+.++.+....|.+. ...+...
T Consensus 275 vv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~--~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~ 341 (524)
T COG0459 275 VVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG--ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETK 341 (524)
T ss_pred EEECCCCcHHHHHHHHhhcceecceecchhhH--HHHHHccCceEEeecccCceeecCccc-----------cceEEEee
Confidence 99999999999999999999999999987542 146689999999988888777766431 1223333
Q ss_pred CCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC-cccCCCcccccCcccchhHHHHHHH
Q 040169 279 TSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLS 352 (459)
Q Consensus 279 ~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~ 352 (459)
.++|++.++++|.+. ++++++|++||+|+ ++|++|||||++|+++++| +|||||++|
T Consensus 342 ~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e---------------- 404 (524)
T COG0459 342 TGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAE---------------- 404 (524)
T ss_pred ccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHH----------------
Confidence 578999999999999 99999999999998 9999999999999999999 999999999
Q ss_pred HHHhhhhccccccchhhHHh-hcCCc-hhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhcCC-CCeeEecCCCcc
Q 040169 353 LAVIRVLMYPRARYYDLDKL-QTTSL-GGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQDN-PDVGYDPARGEY 429 (459)
Q Consensus 353 ~~~~~~~~~~s~~~~~L~~~-~~~~~-~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~~~-~~~Gid~~~g~~ 429 (459)
++++ ..|++| ....+ ++|+|+++|++||+.||++||+|||+||.+++.+|++.++ +++|||+.+|++
T Consensus 405 -------~~~a---~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~ 474 (524)
T COG0459 405 -------IEAA---LRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEY 474 (524)
T ss_pred -------HHHH---HHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCcc
Confidence 9999 999998 44455 9999999999999999999999999999999999999764 459999999999
Q ss_pred -ccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 430 -VDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 430 -~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
.||++.|||||++||+++|++|+++|.++
T Consensus 475 ~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 475 EDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred ccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999875
No 14
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.2e-72 Score=594.71 Aligned_cols=366 Identities=17% Similarity=0.222 Sum_probs=327.9
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||++|||++||++|.+++++|+||+.|++
T Consensus 49 ~iTnDG~tIlk~i~~~hP-------------~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~ 115 (484)
T cd03342 49 KLTKDGNVLLSEMQIQHP-------------TASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITE 115 (484)
T ss_pred EEeccHHHHHHhccCcCH-------------HHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh-------------heeccCCC------chhHHHHHHHHHHHhccCc-c-------EEEEcCC
Q 040169 85 EIYMAFEAIKGHLKCRAR-------------VGRTAANE------DKRIDVLLTEVMEKVGKEG-L-------FIIYDEE 137 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~-------------vA~~ss~~------d~~la~li~~av~~vg~~g-~-------I~i~~g~ 137 (459)
||++|.+.++++|+++++ +|++|.+. ++.|++++++|+.+++.++ . +...+|+
T Consensus 116 g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~gg 195 (484)
T cd03342 116 GFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHK 195 (484)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCC
Confidence 999999999999988764 56666543 5899999999999998765 2 2233677
Q ss_pred CccceeEEEEeEEEeccccccccccc-ccccc------------------CCCEEEEeccchhhHHHHHHHhhhcccccE
Q 040169 138 KKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKF 198 (459)
Q Consensus 138 ~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i 198 (459)
+. +++++++|++|+++|.+|+|+.. ++.++ ..+|+|++++|++.+++.|..|+ |
T Consensus 196 s~-~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~lvi~~~~I~~~al~~l~~~~------I 268 (484)
T cd03342 196 SD-SDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYSVVINQKGIDPPSLDMLAKEG------I 268 (484)
T ss_pred Ch-hhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEEEEEEEeCCCccHHHHHHHHHCC------C
Confidence 76 58999999999999999999776 66555 24578889999999999888874 5
Q ss_pred EEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHH
Q 040169 199 CLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEV---VILDNEMVILGGSGSQADIEKRCEQLRSAI 275 (459)
Q Consensus 199 ~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v---~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i 275 (459)
++||+ .++++|+|||++|||+++++... +++++||+|+.| ++++++++++++|+++
T Consensus 269 ~av~~-----~~~~~l~~ia~~tGa~ii~~l~~--~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-------------- 327 (484)
T cd03342 269 LALRR-----AKRRNMERLTLACGGVAMNSVDD--LSPECLGYAGLVYERTLGEEKYTFIEGVKNP-------------- 327 (484)
T ss_pred eEEEe-----CCHHHHHHHHHHhCCEEeccccc--CChhhCcccceEEEEEECCeEEEEEECCCCC--------------
Confidence 78874 35668999999999999998663 557889999999 6788899999988764
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC-cccCCCcccccCcccchhHHHH
Q 040169 276 KASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG-IIPENSSQVCWQPFASFDLFVY 349 (459)
Q Consensus 276 ~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~ 349 (459)
+++||++||+|+ .+|+++|||+++++++++| +|||||++|
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e------------- 373 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFE------------- 373 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHH-------------
Confidence 378999999998 9999999999999999999 999999999
Q ss_pred HHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhc---CCCCeeEecC
Q 040169 350 FLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQ---DNPDVGYDPA 425 (459)
Q Consensus 350 ~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~---~~~~~Gid~~ 425 (459)
++++ ..|++++. .++++|+++++|++||+.||++||+|||+|+.+++.+|++. +++++|||+.
T Consensus 374 ----------~~ls---~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~ 440 (484)
T cd03342 374 ----------VALY---AHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLD 440 (484)
T ss_pred ----------HHHH---HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCC
Confidence 9999 99999875 48999999999999999999999999999999999999854 4668999999
Q ss_pred CCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 426 RGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 426 ~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+|+++||++.|||||+.||+++|++|+++|+++
T Consensus 441 ~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 473 (484)
T cd03342 441 TGEPMDPESEGIWDNYSVKRQILHSATVIASQL 473 (484)
T ss_pred CCcccchhhcCcEEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 15
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-70 Score=586.62 Aligned_cols=366 Identities=17% Similarity=0.228 Sum_probs=323.8
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|++.|| +|+|++++|++||+++||||||++|||++||++|.+||++|+||+.|++
T Consensus 53 ~ITnDG~TIlk~i~i~hP-------------~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~ 119 (531)
T TIGR02347 53 KLTKDGNVLLNEMQIQHP-------------TASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTE 119 (531)
T ss_pred EEeccHHHHHHhccccCh-------------HHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh-------------heeccC------CCchhHHHHHHHHHHHhccCcc------EEE--EcCC
Q 040169 85 EIYMAFEAIKGHLKCRAR-------------VGRTAA------NEDKRIDVLLTEVMEKVGKEGL------FII--YDEE 137 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~-------------vA~~ss------~~d~~la~li~~av~~vg~~g~------I~i--~~g~ 137 (459)
||+.|.+.++++|+++++ +|+++. ++++.|++++++|+.+++.++. |.+ ..|+
T Consensus 120 g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~ 199 (531)
T TIGR02347 120 GFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHK 199 (531)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCC
Confidence 999999999999998873 555543 3588999999999999987642 333 3566
Q ss_pred CccceeEEEEeEEEeccccccccccc-ccccc-----------------------------------------------C
Q 040169 138 KKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-----------------------------------------------K 169 (459)
Q Consensus 138 ~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-----------------------------------------------~ 169 (459)
+. +++++++|+.|+++|.+|+|+.. ++.++ +
T Consensus 200 s~-~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~ 278 (531)
T TIGR02347 200 SA-TDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELK 278 (531)
T ss_pred Cc-cccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 65 68999999999999999999766 55443 1
Q ss_pred ---C----C---EEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccc
Q 040169 170 ---Q----P---LFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKL 239 (459)
Q Consensus 170 ---~----~---l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~L 239 (459)
. + |++++++|++.+++.|..+ +|+++++. ++.+|+|||++|||+++++... +++++|
T Consensus 279 ~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~l~~--~~~~~L 345 (531)
T TIGR02347 279 KKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNSVED--LTPECL 345 (531)
T ss_pred ccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEeccccc--CCcccc
Confidence 0 3 7778899999999877764 45677643 3568999999999999988653 457899
Q ss_pred eeeeEE---EEecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chh
Q 040169 240 GSCKEV---VILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNK 311 (459)
Q Consensus 240 G~a~~v---~i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r 311 (459)
|+|+.| ++++++++++++|++++ ++||++||+|+ .+|
T Consensus 346 G~~~~v~~~~ig~~~~~~i~~~~~~~-----------------------------------~~TI~lrG~t~~~l~E~er 390 (531)
T TIGR02347 346 GWAGLVYETSIGEEKYTFIEEVKNPK-----------------------------------SCTILIKGPNDHTIKQIKD 390 (531)
T ss_pred ccceEEEEEEECCeEEEEEEcCCCCC-----------------------------------eEEEEEeCCCHHHHHHHHH
Confidence 999999 68899999999887643 78999999998 999
Q ss_pred hhhHHHHHHHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHH
Q 040169 312 RIVNALNAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQA 389 (459)
Q Consensus 312 ~i~DAl~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~A 389 (459)
+++||+|++++++++| +|||||++| +++| ..|++++. .++++|+|+++|++|
T Consensus 391 ~l~DAl~v~~~~~~~~~vvpGGGa~E-----------------------~~ls---~~l~~~~~~~~~~~~~~i~~fa~A 444 (531)
T TIGR02347 391 AVRDGLRAVKNAIEDKCVVPGAGAFE-----------------------IAAY---CHLKEEKKSVKGKAKLGVEAFANA 444 (531)
T ss_pred HHHHHHHHHHHHhhCCcEEeCCCHHH-----------------------HHHH---HHHHHHhhcCCCHHHHHHHHHHHH
Confidence 9999999999999998 999999999 9999 99999865 489999999999999
Q ss_pred HhhHHHHHHHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 390 LKMPVCTIASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 390 L~~ip~~La~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|+.||++||+|||+|+.+++.+|++. ++.++|||+.+|+++||++.|||||+.||+++|++|+++|+++
T Consensus 445 Le~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~i 516 (531)
T TIGR02347 445 LLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQL 516 (531)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864 3467999999999999999999999999999999999999986
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-70 Score=587.39 Aligned_cols=372 Identities=13% Similarity=0.180 Sum_probs=328.2
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|++.|| +|+|++++|++||+++||||||+++|+++||++|.+++++|+||+.|++
T Consensus 45 ~iTnDG~tIlk~l~~~hp-------------~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~ 111 (515)
T cd03338 45 IITNDGATILKQMSVLHP-------------AAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISE 111 (515)
T ss_pred EEECcHHHHHHhCcCcCH-------------HHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------heeccCC------CchhHHHHHHHHHHHhccCcc----------EEEEcC
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGRTAAN------EDKRIDVLLTEVMEKVGKEGL----------FIIYDE 136 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~~ss~------~d~~la~li~~av~~vg~~g~----------I~i~~g 136 (459)
||++|.+.++++|+++++ +|++|.+ +++.|++++++|+.+++.++. |...+|
T Consensus 112 g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~G 191 (515)
T cd03338 112 SFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLG 191 (515)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecC
Confidence 999999999999998875 6666655 678999999999999987653 555688
Q ss_pred CCccceeEEEEeEEEeccccccc----cccc-ccc---------cc----------------------------------
Q 040169 137 EKKKNELKFLRGMKLNWGAVSSF----FIDD-ETQ---------TC---------------------------------- 168 (459)
Q Consensus 137 ~~~~d~~~~v~G~~~~~g~~~~~----~~~~-~~~---------~~---------------------------------- 168 (459)
+++. ++++++|+.|+++|.+|+ +.++ +.. +.
T Consensus 192 gs~~-ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~ 270 (515)
T cd03338 192 GTIE-DTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKK 270 (515)
T ss_pred CChh-hceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8885 569999999999999865 3332 110 00
Q ss_pred -CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEE
Q 040169 169 -KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVI 247 (459)
Q Consensus 169 -~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i 247 (459)
+.||+|++++|+.++++.++.|.+.+ .+|++|+ +.++++|+|||++|||+++++... +++++||+|+.|++
T Consensus 271 ~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~~~~~~LerIa~~tGa~ii~sl~~--l~~~~LG~~~~v~~ 342 (515)
T cd03338 271 SGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----DIEREEIEFICKTIGCKPVASIDH--FTEDKLGSADLVEE 342 (515)
T ss_pred cCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----cCCHHHHHHHHHHHCCEEeccccc--CCHhhCCCCceEEE
Confidence 88999999999888888788777765 7888986 456778999999999999998653 45778999999985
Q ss_pred e---cceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHH
Q 040169 248 L---DNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNA 319 (459)
Q Consensus 248 ~---~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~ 319 (459)
. +++++++.++.. +++++||++||+|+ .+|+++||||+
T Consensus 343 ~~~g~~~~~~i~~~~~----------------------------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~ 388 (515)
T cd03338 343 VSLGDGKIVKITGVKN----------------------------------PGKTVTILVRGSNKLVLDEAERSLHDALCV 388 (515)
T ss_pred EEECCeEEEEEEecCC----------------------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 4 556888887643 24589999999998 99999999999
Q ss_pred HHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHH
Q 040169 320 VKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTI 397 (459)
Q Consensus 320 ~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~L 397 (459)
+++++++| +|||||++| ++++ ..|++++. .++++|+++++|++||+.||++|
T Consensus 389 ~~~~~~~~~vvpGGG~~e-----------------------~~ls---~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L 442 (515)
T cd03338 389 IRCLVKKRALIPGGGAPE-----------------------IEIA---LQLSEWARTLTGVEQYCVRAFADALEVIPYTL 442 (515)
T ss_pred HHHHhhCCCEEECCCHHH-----------------------HHHH---HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999 9999 99999865 48999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 398 ASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 398 a~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|+|||+|+.+++.+|++. ++.++|||+.+|+++||++.|||||+.||++++++|+++|+++
T Consensus 443 ~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~i 506 (515)
T cd03338 443 AENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMI 506 (515)
T ss_pred HHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 4678999999999999999999999999999999999999875
No 17
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5e-70 Score=584.42 Aligned_cols=372 Identities=14% Similarity=0.166 Sum_probs=323.2
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|++.|| +|+|++++|++||+++||||||+++|+++||++|.+|+++|+||+.|++
T Consensus 46 ~ITnDG~tIlk~i~~~hP-------------~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~ 112 (517)
T TIGR02342 46 IITNDGATILKQMGVIHP-------------AAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISE 112 (517)
T ss_pred EEeCCHHHHHHhccccCh-------------HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------heeccCC------CchhHHHHHHHHHHHhcc---Ccc-----EEEE--cC
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGRTAAN------EDKRIDVLLTEVMEKVGK---EGL-----FIIY--DE 136 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~~ss~------~d~~la~li~~av~~vg~---~g~-----I~i~--~g 136 (459)
||+.|.+.++++|+++++ +|++|.+ +.+.|++++++|+.+++. ++. |.+. .|
T Consensus 113 g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~G 192 (517)
T TIGR02342 113 SFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLG 192 (517)
T ss_pred HHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccC
Confidence 999999999999998875 5555432 467789999999999975 232 3333 56
Q ss_pred CCccceeEEEEeEEEecccccc-ccccc-ccccc----------------------------------------------
Q 040169 137 EKKKNELKFLRGMKLNWGAVSS-FFIDD-ETQTC---------------------------------------------- 168 (459)
Q Consensus 137 ~~~~d~~~~v~G~~~~~g~~~~-~~~~~-~~~~~---------------------------------------------- 168 (459)
++. +++++++|++|+++|.++ .|+.. ++.++
T Consensus 193 gs~-~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~ 271 (517)
T TIGR02342 193 GTI-DDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKK 271 (517)
T ss_pred CCh-hhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666 578999999999999982 33322 22211
Q ss_pred -CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE-
Q 040169 169 -KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV- 246 (459)
Q Consensus 169 -~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~- 246 (459)
+.||++++++|+.++++.++.|.+.+ .+|++|+ +.++++|+|||++|||+++++... +++++||+|+.|+
T Consensus 272 ~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~v~~~~LerIa~~tGa~ii~~~~~--l~~~~LG~~~~v~~ 343 (517)
T TIGR02342 272 TGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----DIEREEVEFICKTIGCKPIASIDH--FTADKLGSAELVEE 343 (517)
T ss_pred cCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----cCCHHHHHHHHHHHCCEEEcchhh--cCcccCcCCceEEE
Confidence 88999999999888888888887766 7889987 446778999999999999998653 5578899999998
Q ss_pred --EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHH
Q 040169 247 --ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNA 319 (459)
Q Consensus 247 --i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~ 319 (459)
++++.++++.+++. +++++||++||+|+ .+|+++||+++
T Consensus 344 ~~~~~~~~~~i~~~~~----------------------------------~~~~~tIllrG~t~~~l~E~er~i~DAl~~ 389 (517)
T TIGR02342 344 VTTDGGKIIKITGIQN----------------------------------AGKTVTVLLRGSNKLVIDEAERSLHDALCV 389 (517)
T ss_pred EEECCeEEEEEEccCC----------------------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 34556777776544 24689999999998 99999999999
Q ss_pred HHHHHhC-CcccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHH
Q 040169 320 VKAAMEG-GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTI 397 (459)
Q Consensus 320 ~k~a~~~-gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~L 397 (459)
+++++++ ++|||||++| +++| ..|++++. .++++|+++++|++||+.||++|
T Consensus 390 v~~~~~~~~~VpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~L 443 (517)
T TIGR02342 390 IRSLVKKRGLIPGGGAPE-----------------------IEIA---IKLSKLARTMKGVESYCVRAFADALEVIPYTL 443 (517)
T ss_pred HHHHhhCCCEEECcCHHH-----------------------HHHH---HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 6999999999 9999 99999865 48999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 398 ASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 398 a~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|+|||+|+.+++.+|++. +++++|||+.+|+++||++.|||||+.||++++++|+++|+++
T Consensus 444 a~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~i 507 (517)
T TIGR02342 444 AENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMI 507 (517)
T ss_pred HHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 4678999999999999999999999999999999999999875
No 18
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2e-69 Score=580.01 Aligned_cols=366 Identities=17% Similarity=0.231 Sum_probs=326.2
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||+++|+++|++++.+++++|+||+.|++
T Consensus 52 ~iTnDG~tIlk~l~~~hP-------------~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~ 118 (517)
T cd03343 52 TITNDGATILKEMDIEHP-------------AAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIE 118 (517)
T ss_pred EEEccHHHHHHHccCcCH-------------HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------heeccCC------CchhHHHHHHHHHHHhccCcc---------EEE--Ec
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGRTAAN------EDKRIDVLLTEVMEKVGKEGL---------FII--YD 135 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~~ss~------~d~~la~li~~av~~vg~~g~---------I~i--~~ 135 (459)
||++|.+.+++.|+++++ +|++|.+ +++.|++++++|+.+++.++. |.+ .+
T Consensus 119 g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~ 198 (517)
T cd03343 119 GYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKT 198 (517)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeec
Confidence 999999999999998875 6666654 348999999999999976532 666 47
Q ss_pred CCCccceeEEEEeEEEeccccccccccc-ccccc----------------------------------------------
Q 040169 136 EEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC---------------------------------------------- 168 (459)
Q Consensus 136 g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~---------------------------------------------- 168 (459)
|+++. ++++++|++|+++|.+|+|+.. ++.++
T Consensus 199 Ggs~~-ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~ 277 (517)
T cd03343 199 GGSVD-DTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIAD 277 (517)
T ss_pred CcCHH-HcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88885 7899999999999999998755 54433
Q ss_pred -CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEE
Q 040169 169 -KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVI 247 (459)
Q Consensus 169 -~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i 247 (459)
+.||+|++++|++++++.|..+ ++.+|+ +.++++|+|||++|||+++++.. ++++++||+|+.|++
T Consensus 278 ~g~~lvi~~~~I~~~al~~l~~~------gI~~v~-----~v~~~~l~~Ia~~tGa~ii~~~~--~l~~~~LG~~~~v~~ 344 (517)
T cd03343 278 TGANVVFCQKGIDDLAQHYLAKA------GILAVR-----RVKKSDMEKLARATGAKIVTNID--DLTPEDLGEAELVEE 344 (517)
T ss_pred cCCCEEEeCCCccHHHHHHHhHC------CcEEEE-----eCCHHHHHHHHHHhCCEEecchh--hCChhhCCccceEEE
Confidence 7899999999999999988643 335665 44577899999999999998765 345778999999986
Q ss_pred e---cceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHH
Q 040169 248 L---DNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNA 319 (459)
Q Consensus 248 ~---~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~ 319 (459)
. +++|+++++|++++ .+||++||+|+ .+|+++||||+
T Consensus 345 ~~ig~~~~~~~~~~~~~~-----------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~ 389 (517)
T cd03343 345 RKVGDDKMVFVEGCKNPK-----------------------------------AVTILLRGGTEHVVDELERALEDALRV 389 (517)
T ss_pred EEECCeEEEEEEcCCCCc-----------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHH
Confidence 5 88899999887643 57899999998 89999999999
Q ss_pred HHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHH
Q 040169 320 VKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTI 397 (459)
Q Consensus 320 ~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~L 397 (459)
+|+++++| +|||||++| ++++ ..|++++. .++++++++++|++||+.||++|
T Consensus 390 ~~~~~~~~~vvpGGG~~e-----------------------~~ls---~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L 443 (517)
T cd03343 390 VADALEDGKVVAGGGAVE-----------------------IELA---KRLREYARSVGGREQLAVEAFADALEEIPRTL 443 (517)
T ss_pred HHHHHhCCCeeeCCCHHH-----------------------HHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999 9999 99998864 48999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 398 ASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 398 a~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|+|||+|+.+++.+|++. ++.++|||+.+|++.||++.|||||+.||++++++|+++|+++
T Consensus 444 ~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 507 (517)
T cd03343 444 AENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMI 507 (517)
T ss_pred HHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999853 4678999999999999999999999999999999999999975
No 19
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.5e-69 Score=579.54 Aligned_cols=366 Identities=16% Similarity=0.233 Sum_probs=323.6
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++
T Consensus 53 ~iTnDG~tIlk~l~~~hP-------------~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~ 119 (519)
T TIGR02339 53 TITNDGATILKEMDIEHP-------------AAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIE 119 (519)
T ss_pred EEEccHHHHHHhccCCCH-------------HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------heeccCC-------CchhHHHHHHHHHHHhcc---Ccc-------EEE--
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGRTAAN-------EDKRIDVLLTEVMEKVGK---EGL-------FII-- 133 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~~ss~-------~d~~la~li~~av~~vg~---~g~-------I~i-- 133 (459)
||+.|.+.++++|+++++ +|+++.+ +++.|++++++|+.+++. +|. |.+
T Consensus 120 g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k 199 (519)
T TIGR02339 120 GYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEK 199 (519)
T ss_pred HHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEE
Confidence 999999999999998775 6665543 348899999999999974 453 334
Q ss_pred EcCCCccceeEEEEeEEEeccccccccccc-ccccc--------------------------------------------
Q 040169 134 YDEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-------------------------------------------- 168 (459)
Q Consensus 134 ~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-------------------------------------------- 168 (459)
.+|++.. ++++++|+.|+++|.+|.|+.. ++.++
T Consensus 200 ~~Ggs~~-ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i 278 (519)
T TIGR02339 200 KTGGSID-DTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKI 278 (519)
T ss_pred ccCcChh-cceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788885 7899999999999999887655 44433
Q ss_pred ---CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEE
Q 040169 169 ---KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEV 245 (459)
Q Consensus 169 ---~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v 245 (459)
+.||++++++|++.+++.|..++ +.+|+ +.++++|+|||++|||+++++... +.+++||+|+.|
T Consensus 279 ~~~g~~lvi~~~~I~~~al~~L~~~g------I~~v~-----~v~~~~L~rIa~~tGa~ii~~~~~--l~~~~LG~~~~v 345 (519)
T TIGR02339 279 ADAGANVVFCQKGIDDLAQHYLAKAG------ILAVR-----RVKKSDIEKLARATGAKIVSSIKE--ITESDLGYAGLV 345 (519)
T ss_pred HhcCCcEEEECCCccHHHHHHHHHCC------CEEEe-----cCCHHHHHHHHHHhCCEEeCchhh--CChhhccCCceE
Confidence 78999999999999999886433 34565 345678999999999999998653 457789999999
Q ss_pred EEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHH
Q 040169 246 VIL---DNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNAL 317 (459)
Q Consensus 246 ~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl 317 (459)
++. +++|+++++|+.+. .+||++||+|+ .+|+++|||
T Consensus 346 ~~~~ig~~~~~~~~~~~~~~-----------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl 390 (519)
T TIGR02339 346 EERKVGDDKMTFVEGCKNPK-----------------------------------AVTILLRGGTEHVVDELERSIQDAL 390 (519)
T ss_pred EEEEECCeEEEEEEcCCCCC-----------------------------------EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 865 48899999876543 67899999998 899999999
Q ss_pred HHHHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHH
Q 040169 318 NAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVC 395 (459)
Q Consensus 318 ~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~ 395 (459)
|++++++++| +|||||++| +++| ..|++++. .++++++++++|++||+.||+
T Consensus 391 ~~~~~~~~~~~vvpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~ 444 (519)
T TIGR02339 391 HVVASALEDGKVVAGGGAVE-----------------------IELA---LRLRSYARKIGGREQLAIEAFADALEEIPR 444 (519)
T ss_pred HHHHHHhcCCCEeeCCCHHH-----------------------HHHH---HHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999 9999 99998865 489999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 396 TIASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 396 ~La~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+||+|||+|+.+++.+|++. ++.++|||+.+|+++||++.|||||+.||+++++.|+++|+++
T Consensus 445 ~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 510 (519)
T TIGR02339 445 ILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMI 510 (519)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853 4568999999999999999999999999999999999999875
No 20
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-69 Score=581.53 Aligned_cols=368 Identities=15% Similarity=0.192 Sum_probs=323.7
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|++.|| +|+|++++|++||+++||||||++|||++||+++.+|+++|+||+.|++
T Consensus 45 ~iTnDG~tIlk~i~~~hP-------------~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~ 111 (527)
T cd03335 45 TITNDGATILKLLEVEHP-------------AAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIIS 111 (527)
T ss_pred EEeCcHHHHHHhccccCh-------------HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-hhh------------heeccCC------CchhHHHHHHHHHHHhcc---Ccc-------E--EE
Q 040169 85 EIYMAFEAIKGHLKC-RAR------------VGRTAAN------EDKRIDVLLTEVMEKVGK---EGL-------F--II 133 (459)
Q Consensus 85 G~~~a~~~~l~~L~~-~s~------------vA~~ss~------~d~~la~li~~av~~vg~---~g~-------I--~i 133 (459)
||+.|.+.++++|++ +++ +|+++.+ +.+.|++++++|+.+++. +|. | ..
T Consensus 112 g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~ 191 (527)
T cd03335 112 GYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILK 191 (527)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEE
Confidence 999999999999986 664 5555432 358999999999999852 231 2 23
Q ss_pred EcCCCccceeEEEEeEEEeccccccccccc-ccccc--------------------------------------------
Q 040169 134 YDEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-------------------------------------------- 168 (459)
Q Consensus 134 ~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-------------------------------------------- 168 (459)
.+|++.. ++++++|++|+++|.+|.|+.. ++.++
T Consensus 192 ~~Ggs~~-~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i 270 (527)
T cd03335 192 AHGKSAK-ESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKI 270 (527)
T ss_pred ecCcChh-hcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788875 7899999999999999887655 54433
Q ss_pred ---CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeecccc----cccccccee
Q 040169 169 ---KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNS----LLARLKLGS 241 (459)
Q Consensus 169 ---~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~----~l~~~~LG~ 241 (459)
+.||+|++++|++.+++.|..+ ++++++ +.++++|+|||++|||+++++..++ .+++++||+
T Consensus 271 ~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~ 339 (527)
T cd03335 271 LAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGE 339 (527)
T ss_pred HHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCcc
Confidence 7889999999999999988875 346665 4456789999999999999886432 233668999
Q ss_pred eeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhh
Q 040169 242 CKEVV---ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRI 313 (459)
Q Consensus 242 a~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i 313 (459)
|+.|+ +++++++++++|++ ++++||++||+|+ .+|++
T Consensus 340 ~~~v~~~~ig~~~~~~i~g~~~-----------------------------------~~~~TIllrG~t~~~l~e~er~i 384 (527)
T cd03335 340 AEEVVQERIGDDELILIKGTKK-----------------------------------RSSASIILRGANDFMLDEMERSL 384 (527)
T ss_pred CceEEEEEECCeEEEEEEcCCC-----------------------------------CCEEEEEEeCCcHHHHHHHHHHH
Confidence 99998 78889999998765 3489999999998 99999
Q ss_pred hHHHHHHHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHh
Q 040169 314 VNALNAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALK 391 (459)
Q Consensus 314 ~DAl~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~ 391 (459)
+||||++++++++| +|||||++| ++++ ..|++++. .++++++++++|++||+
T Consensus 385 ~Dal~~~~~~~~~~~vvpGGGa~e-----------------------~~ls---~~L~~~~~~~~~~~~~~i~~~a~aL~ 438 (527)
T cd03335 385 HDALCVVKRTLESNSVVPGGGAVE-----------------------TALS---IYLENFATTLGSREQLAIAEFAEALL 438 (527)
T ss_pred HHHHHHHHHHhhCCCEeeCCCHHH-----------------------HHHH---HHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99999999999999 999999999 9999 99999865 48999999999999999
Q ss_pred hHHHHHHHhcCCChHHHHHHHHhc---C--------CCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 392 MPVCTIASATGVDGSAVAEKLLEQ---D--------NPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 392 ~ip~~La~NaG~d~~~vl~kl~~~---~--------~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
.||++||+|||+|+.+++.+|++. + ++++|||+.+|+++||++.|||||+.+|.++|+.|+++|++|
T Consensus 439 ~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~i 516 (527)
T cd03335 439 VIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITI 516 (527)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999863 2 357999999999999999999999999999999999999986
No 21
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.6e-69 Score=577.59 Aligned_cols=376 Identities=14% Similarity=0.151 Sum_probs=328.4
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|+++|| +|+|++++|++||+++||||||+|||+++||++|.+++++|+||+.|++
T Consensus 54 ~iTnDG~TIlk~i~~~hP-------------~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~ 120 (522)
T TIGR02345 54 TVSNDGATILKLLDIVHP-------------AAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIR 120 (522)
T ss_pred EEeCcHHHHHHHhcccCh-------------HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHH
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------------heeccC------CCchhHHHHHHHHHHHhccCc------cEEEEcCC
Q 040169 85 EIYMAFEAIKGHLKCRAR---------------VGRTAA------NEDKRIDVLLTEVMEKVGKEG------LFIIYDEE 137 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------------vA~~ss------~~d~~la~li~~av~~vg~~g------~I~i~~g~ 137 (459)
||+.|.+.++++|+++++ +|+++. .++++|++++++|+.+++.++ .+...+|+
T Consensus 121 g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Gg 200 (522)
T TIGR02345 121 CYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGG 200 (522)
T ss_pred HHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCC
Confidence 999999999999988764 555543 368999999999999997642 23333788
Q ss_pred CccceeEEEEeEEEecccccccc---ccc-ccccc------------CCCEEEEeccchh-----hHHHHHHHhhhcccc
Q 040169 138 KKKNELKFLRGMKLNWGAVSSFF---IDD-ETQTC------------KQPLFIIAEDVEV-----EVAGSLILDRICVST 196 (459)
Q Consensus 138 ~~~d~~~~v~G~~~~~g~~~~~~---~~~-~~~~~------------~~~l~ii~~~i~~-----~al~~l~~n~~~~~~ 196 (459)
++. ++++++|++|+++|.+|+| +.. ++.++ +.|+.|..+++++ ++++.++.|+++++.
T Consensus 201 s~~-ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~ 279 (522)
T TIGR02345 201 SLQ-DSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIV 279 (522)
T ss_pred CHH-hcceecceEEecccCccccccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 885 5779999999999999987 444 44444 5578888888888 788888999887754
Q ss_pred ----cEEEecCCCccccc----------------cchHHHHHHHhCCeEeeeccccccccccceeeeEEEE---ecceEE
Q 040169 197 ----KFCLVKPPEFEENC----------------KGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVI---LDNEMV 253 (459)
Q Consensus 197 ----~i~~vk~~~~~~~r----------------~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i---~~~~~~ 253 (459)
++++++.| +++.+ ++++++++++|||+++++... +++++||+|+.|+. ++++++
T Consensus 280 ~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~--l~~~~LG~~~~ie~~~~~~~r~~ 356 (522)
T TIGR02345 280 ESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSD--LEADVLGTCALFEERQIGSERYN 356 (522)
T ss_pred hcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhh--CChhhccCCceEEEEEECCeEEE
Confidence 78888887 66553 477999999999999988653 45788999999874 567788
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhC-C
Q 040169 254 ILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEG-G 327 (459)
Q Consensus 254 ~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~-g 327 (459)
++.||+.++ ++||++||+|+ .+|+++||||++|+++++ +
T Consensus 357 ~~~g~~~~~-----------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~ 401 (522)
T TIGR02345 357 YFTGCPHAK-----------------------------------TCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARK 401 (522)
T ss_pred EEEcCCCCc-----------------------------------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 888765532 78999999998 999999999999999997 6
Q ss_pred cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChH
Q 040169 328 IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGS 406 (459)
Q Consensus 328 vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~ 406 (459)
+|||||++| ++++ ..|++++. .++++++++++|++||+.||++||+|||+|+.
T Consensus 402 vvpGGG~~e-----------------------~~ls---~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~ 455 (522)
T TIGR02345 402 IVAGGGAIE-----------------------MELS---KILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSI 455 (522)
T ss_pred EEeCCCHHH-----------------------HHHH---HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999999999 9999 99998865 48999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 407 AVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 407 ~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+++.+|++. ++.++|||+.+|++.||++.|||||+.||+++|++|+++|+++
T Consensus 456 ~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 510 (522)
T TIGR02345 456 EILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTI 510 (522)
T ss_pred HHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 999999874 4567999999999999999999999999999999999999875
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.3e-69 Score=577.17 Aligned_cols=366 Identities=14% Similarity=0.190 Sum_probs=321.8
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||+++||++||+++.+++++|+||+.|++
T Consensus 60 ~iTnDG~tIlk~l~~~hP-------------~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~ 126 (526)
T cd03339 60 TVTNDGATILEKMDVDHQ-------------IAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIAD 126 (526)
T ss_pred EEeCcHHHHHHHhcccCH-------------HHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh--------------heeccCC------CchhHHHHHHHHHHHhccC-------ccEEEE--c
Q 040169 85 EIYMAFEAIKGHLKCRAR--------------VGRTAAN------EDKRIDVLLTEVMEKVGKE-------GLFIIY--D 135 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~--------------vA~~ss~------~d~~la~li~~av~~vg~~-------g~I~i~--~ 135 (459)
||+.|.+.+++.|+++++ +|++|.+ ..+.|++++++|+..+... ..|.+. +
T Consensus 127 g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~ 206 (526)
T cd03339 127 GYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKV 206 (526)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEec
Confidence 999999999999988875 4544432 3578999999999887421 123333 7
Q ss_pred CCCccceeEEEEeEEEeccccccccccc-ccccc----------------------------------------------
Q 040169 136 EEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC---------------------------------------------- 168 (459)
Q Consensus 136 g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~---------------------------------------------- 168 (459)
|+++. ++++++|+.|+++|.+|+|+++ ++.++
T Consensus 207 Ggs~~-dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~ 285 (526)
T cd03339 207 GGRLE-DTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKD 285 (526)
T ss_pred CcCHH-HcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88885 7899999999999999999877 66433
Q ss_pred -CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEE
Q 040169 169 -KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVI 247 (459)
Q Consensus 169 -~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i 247 (459)
+.||++++++|++.+++.|..|++ .+|++++ +.+|+|||++|||+++++... +++++||+|+.|+.
T Consensus 286 ~g~~lvi~~~~I~~~al~~L~~~~I------~av~~v~-----~~~LerIa~~tGa~ii~~l~~--l~~~~LG~~~~v~~ 352 (526)
T cd03339 286 AGANLVICQWGFDDEANHLLLQNGL------PAVRWVG-----GVEIELIAIATGGRIVPRFED--LSPEKLGKAGLVRE 352 (526)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCC------EEEEeCC-----HHHHHHHHHHhCCEEecchhh--CChhhcccCceEEE
Confidence 789999999999999999987764 4777642 346999999999999988653 55778999999873
Q ss_pred ---e--cceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHH
Q 040169 248 ---L--DNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNAL 317 (459)
Q Consensus 248 ---~--~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl 317 (459)
+ +++++++++|+++ +.+||++||+|+ .+|+++|||
T Consensus 353 ~~ig~~~~~~~~i~g~~~~-----------------------------------~~~TIllrG~t~~~l~E~er~l~DAl 397 (526)
T cd03339 353 ISFGTTKDKMLVIEGCPNS-----------------------------------KAVTIFIRGGNKMIIEEAKRSLHDAL 397 (526)
T ss_pred EEecCCCcEEEEEECCCCC-----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3 4678999988764 378999999998 999999999
Q ss_pred HHHHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHH
Q 040169 318 NAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVC 395 (459)
Q Consensus 318 ~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~ 395 (459)
|++++++++| +|||||++| ++++ ..|++++. .++++++++++|++||+.||+
T Consensus 398 ~~~~~~~~~~~vvpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~ 451 (526)
T cd03339 398 CVVRNLIRDNRIVYGGGAAE-----------------------ISCS---LAVEKAADKCSGIEQYAMRAFADALESIPL 451 (526)
T ss_pred HHHHHHhhCCCEEeCCCHHH-----------------------HHHH---HHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999 9999 99999865 488999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHhc----CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 396 TIASATGVDGSAVAEKLLEQ----DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 396 ~La~NaG~d~~~vl~kl~~~----~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+||+|||+|+.+++.+|++. ++.++|||+.+|+++||++.|||||+.||+++|++|+++|+++
T Consensus 452 ~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~i 518 (526)
T cd03339 452 ALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMI 518 (526)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999843 2557999999999999999999999999999999999999986
No 23
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-68 Score=575.29 Aligned_cols=366 Identities=15% Similarity=0.206 Sum_probs=321.1
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||+++|+++||++|.+|+++|+||+.|++
T Consensus 64 ~ITnDG~tIlk~l~~~hP-------------~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~ 130 (532)
T TIGR02343 64 TVTNDGATILSQMDVDNP-------------IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAE 130 (532)
T ss_pred EEeCcHHHHHHHccCCCH-------------HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh--------------heeccCC------CchhHHHHHHHHHHHhcc-C-c-----cEEE--Ec
Q 040169 85 EIYMAFEAIKGHLKCRAR--------------VGRTAAN------EDKRIDVLLTEVMEKVGK-E-G-----LFII--YD 135 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~--------------vA~~ss~------~d~~la~li~~av~~vg~-~-g-----~I~i--~~ 135 (459)
||+.|.+.++++|+++++ +|+++.+ +.+.|++++++|+..+.. + + .|.+ .+
T Consensus 131 g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~ 210 (532)
T TIGR02343 131 GFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKV 210 (532)
T ss_pred HHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEec
Confidence 999999999999998875 4444322 357799999999988743 1 1 2333 37
Q ss_pred CCCccceeEEEEeEEEeccccccccccc-ccccc----------------------------------------------
Q 040169 136 EEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC---------------------------------------------- 168 (459)
Q Consensus 136 g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~---------------------------------------------- 168 (459)
|+++. ++++++|+.|+++|.+|+|+++ ++.++
T Consensus 211 Ggs~~-ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~ 289 (532)
T TIGR02343 211 GGSLE-DTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKK 289 (532)
T ss_pred CCCcc-cceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 5699999999999999999877 66433
Q ss_pred -CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE-
Q 040169 169 -KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV- 246 (459)
Q Consensus 169 -~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~- 246 (459)
+.||+|++++|++.+++.|..|++ .+||.++ +.+|+|||++|||+++++... +++++||+|+.|+
T Consensus 290 ~g~~lvi~~~~I~~~al~~L~~~~i------~~v~~~~-----~~~l~~Ia~~tGa~~i~~l~~--~~~~~LG~a~~v~~ 356 (532)
T TIGR02343 290 SGANIVICQWGFDDEANHLLLQNDL------PAVRWVG-----GHELELIAIATGGRIVPRFEE--LSEDKLGKAGLVRE 356 (532)
T ss_pred cCCCEEEeCCCccHHHHHHHHHCCc------EEEEcCC-----HHHHHHHHHHhCCEEeccccc--CCHhHCcccceEEE
Confidence 889999999999999999988764 4677543 345999999999999998653 4578899999987
Q ss_pred --Eec--ceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHH
Q 040169 247 --ILD--NEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNAL 317 (459)
Q Consensus 247 --i~~--~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl 317 (459)
++. ++++++++|++++ ++||++||+|+ .+|+++|||
T Consensus 357 ~~ig~~~~~~~~i~~~~~~~-----------------------------------~~TIllrG~t~~~l~E~er~l~DAl 401 (532)
T TIGR02343 357 ISFGTTKDRMLVIEQCKNSK-----------------------------------AVTIFIRGGNKMIIEEAKRSIHDAL 401 (532)
T ss_pred EEecCCcceEEEEECCCCCC-----------------------------------EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 333 5789999887643 78999999998 999999999
Q ss_pred HHHHHHHhC-CcccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHH
Q 040169 318 NAVKAAMEG-GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVC 395 (459)
Q Consensus 318 ~~~k~a~~~-gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~ 395 (459)
+++++++++ ++|||||++| ++++ ..|++++. .++++|+++++|++||+.||+
T Consensus 402 ~~v~~~i~~~~vvpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~ 455 (532)
T TIGR02343 402 CVVRNLIKNSRIVYGGGAAE-----------------------ISCS---LAVSQEADKYSGVEQYAIRAFADALEEIPM 455 (532)
T ss_pred HHHHHHHhCCCEEeCcCHHH-----------------------HHHH---HHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 999999998 5999999999 9999 99999865 488999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHhc----CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 396 TIASATGVDGSAVAEKLLEQ----DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 396 ~La~NaG~d~~~vl~kl~~~----~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+||+|||+|+.+++.+|++. ++.++|+|+.+|+++||++.|||||+.||+++|+.|+++|+++
T Consensus 456 ~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~i 522 (532)
T TIGR02343 456 ALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMI 522 (532)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853 2567999999999999999999999999999999999999875
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-68 Score=576.64 Aligned_cols=368 Identities=15% Similarity=0.193 Sum_probs=322.3
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| .|+|++++|++||+++||||||++||+++||++|.+++++|+||+.|++
T Consensus 49 ~iTnDG~tIlk~i~~~hP-------------~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~ 115 (536)
T TIGR02340 49 TITNDGATILKLLEVEHP-------------AAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIIS 115 (536)
T ss_pred EEeccHHHHHHHhcccCh-------------HHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hh------------heeccCC------CchhHHHHHHHHHHHhc---cCcc-------EEE--
Q 040169 85 EIYMAFEAIKGHLKCR-AR------------VGRTAAN------EDKRIDVLLTEVMEKVG---KEGL-------FII-- 133 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~-s~------------vA~~ss~------~d~~la~li~~av~~vg---~~g~-------I~i-- 133 (459)
||+.|.+.++++|+++ ++ +|+++.+ +++.|++++++|+..++ .+|. |.+
T Consensus 116 g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k 195 (536)
T TIGR02340 116 GYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILK 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEE
Confidence 9999999999999874 53 5655543 67899999999999985 2332 233
Q ss_pred EcCCCccceeEEEEeEEEeccccccccccc-ccccc--------------------------------------------
Q 040169 134 YDEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-------------------------------------------- 168 (459)
Q Consensus 134 ~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-------------------------------------------- 168 (459)
.+|++. +++++++|+.|+++|.+|.|+.. ++.++
T Consensus 196 ~~G~s~-~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I 274 (536)
T TIGR02340 196 AHGGSA-RESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKI 274 (536)
T ss_pred ecCCCc-cccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888 68999999999999999987655 54433
Q ss_pred ---CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeecccc----cccccccee
Q 040169 169 ---KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNS----LLARLKLGS 241 (459)
Q Consensus 169 ---~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~----~l~~~~LG~ 241 (459)
+.+|+++.++|++.+++.|..+. +++++. .++++|+|||++|||+++++..++ ++++++||+
T Consensus 275 ~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~r-----v~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~ 343 (536)
T TIGR02340 275 LKAGANVVLTTGGIDDMCLKYFVEAG------AMGVRR-----CKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGF 343 (536)
T ss_pred HHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEec-----CCHHHHHHHHHHhCCEEecchhhcCcccccccccccc
Confidence 67788888899999998777654 356543 346789999999999999886432 234667999
Q ss_pred eeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhh
Q 040169 242 CKEVV---ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRI 313 (459)
Q Consensus 242 a~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i 313 (459)
|+.|+ +++++|++++++++++ ++||++||+|+ ++|++
T Consensus 344 ~~~v~~~~ig~~~~~~i~~~~~~~-----------------------------------~~TIlirG~t~~~l~E~~r~i 388 (536)
T TIGR02340 344 ADEVVEERIADDECILIKGTKGRK-----------------------------------SASIILRGANDFMLDEMERSL 388 (536)
T ss_pred CceEEEEEECCeEEEEEEcCCCCC-----------------------------------EEEEEEeCCcHHHHHHHHHHH
Confidence 99998 8899999999876643 78999999998 99999
Q ss_pred hHHHHHHHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHh
Q 040169 314 VNALNAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALK 391 (459)
Q Consensus 314 ~DAl~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~ 391 (459)
+||||++|+++++| +|||||++| ++++ ..|++++. .++++++++++|++||+
T Consensus 389 ~DAl~~~~~~~~~~~vVpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~~~~fa~AL~ 442 (536)
T TIGR02340 389 HDALCVVKRTLESNSVVPGGGAVE-----------------------TALS---IYLENFATTLGSREQLAIAEFAEALL 442 (536)
T ss_pred HHHHHHHHHHhcCCCEEECCCHHH-----------------------HHHH---HHHHHHhhhCCChhHHHHHHHHHHHH
Confidence 99999999999999 999999999 9999 99998865 48999999999999999
Q ss_pred hHHHHHHHhcCCChHHHHHHHHhc---C--------CCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 392 MPVCTIASATGVDGSAVAEKLLEQ---D--------NPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 392 ~ip~~La~NaG~d~~~vl~kl~~~---~--------~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
.||++||+|||+|+.+++.+|++. + +.++|||+.+|++.||++.|||||+.+|+++|+.|+++|+++
T Consensus 443 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~i 520 (536)
T TIGR02340 443 IIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITI 520 (536)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999863 1 347999999999999999999999999999999999999985
No 25
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-68 Score=575.67 Aligned_cols=367 Identities=13% Similarity=0.132 Sum_probs=322.0
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
.+||||+||+|+|+++|| .|+|++++|++||+++||||||+|||+++||+++.+++++|+||+.|++
T Consensus 55 ~ITnDG~tIlk~i~~~hP-------------~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~ 121 (531)
T TIGR02346 55 FVTNDAATILRELEVQHP-------------AAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIK 121 (531)
T ss_pred EEECcHHHHHHhccccCH-------------HHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 589999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh--------------he--eccC---CCchhHHHHHHHHHHHhccCc--cEEE-----E--cC
Q 040169 85 EIYMAFEAIKGHLKCRAR--------------VG--RTAA---NEDKRIDVLLTEVMEKVGKEG--LFII-----Y--DE 136 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~--------------vA--~~ss---~~d~~la~li~~av~~vg~~g--~I~i-----~--~g 136 (459)
||+.|.+.+++.|+++++ +| ++++ ++++.|++++++|+.+++.++ .+.+ . +|
T Consensus 122 g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G 201 (531)
T TIGR02346 122 GYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMG 201 (531)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecC
Confidence 999999999999988763 32 2333 348999999999999998654 2222 2 78
Q ss_pred CCccceeEEEEeEEEecc---------------ccccccccc-c-cccc-----------------------------CC
Q 040169 137 EKKKNELKFLRGMKLNWG---------------AVSSFFIDD-E-TQTC-----------------------------KQ 170 (459)
Q Consensus 137 ~~~~d~~~~v~G~~~~~g---------------~~~~~~~~~-~-~~~~-----------------------------~~ 170 (459)
++.. ++++++|++|+++ |.+|++.++ + +..+ +.
T Consensus 202 ~s~~-ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~ 280 (531)
T TIGR02346 202 GSIS-NSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGV 280 (531)
T ss_pred CChh-hceeEeeeEEeccCCCCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8875 8999999999999 778887766 4 2222 88
Q ss_pred CEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEE---
Q 040169 171 PLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVI--- 247 (459)
Q Consensus 171 ~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i--- 247 (459)
||+|++++|++.+++.|.. .+|++||+|+++ +|+|||.+|||+++++... +++++||+|+.|++
T Consensus 281 ~lvi~~~~I~d~~~~~l~~------~~I~av~~~~~~-----~l~~Ia~~tGa~ii~~l~~--~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 281 NVIVTGGSVGDMALHYCEK------YNIMVLKIPSKF-----ELRRLCKTVGATPLARLGA--PQPEEIGYVDSVYVSEI 347 (531)
T ss_pred cEEEECCCcCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHHCCEEeccccc--CCHhHccccceEEEEEE
Confidence 9999999999999986653 467899999766 6899999999999988653 45778999999975
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHH
Q 040169 248 LDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKA 322 (459)
Q Consensus 248 ~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~ 322 (459)
++++++++.++.. .++++||++||+|+ .+|+++||||++|+
T Consensus 348 g~~~~~~i~~~~~----------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ 393 (531)
T TIGR02346 348 GGQKVTVFKQENG----------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKA 393 (531)
T ss_pred CCEEEEEEEccCC----------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567888876432 25689999999998 99999999999999
Q ss_pred HHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHh
Q 040169 323 AMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASA 400 (459)
Q Consensus 323 a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~N 400 (459)
++++| +|||||++| ++++ ..|++++. .++++++++++|++||+.||++||+|
T Consensus 394 ai~~~~vVpGGG~~e-----------------------~~ls---~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~N 447 (531)
T TIGR02346 394 LVKDNRFLPGAGATE-----------------------IELA---LRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAEN 447 (531)
T ss_pred HhcCCCEEECcCHHH-----------------------HHHH---HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 999999999 9999 99999865 48899999999999999999999999
Q ss_pred cCCChHHHHHHHHhc---CCCCeeEecCCCc--cccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 401 TGVDGSAVAEKLLEQ---DNPDVGYDPARGE--YVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 401 aG~d~~~vl~kl~~~---~~~~~Gid~~~g~--~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
||+|+.+++.+|++. ++.++|||+.+|+ ++||++.|||||+.||+++|++|+++|+++
T Consensus 448 aG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 510 (531)
T TIGR02346 448 AGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTV 510 (531)
T ss_pred CCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 4668999999999 599999999999999999999999999975
No 26
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-68 Score=569.67 Aligned_cols=366 Identities=16% Similarity=0.170 Sum_probs=321.7
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||++||+++||+++.+++++|+||+.|++
T Consensus 53 ~iTnDG~tIlk~l~~~hP-------------~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~ 119 (480)
T cd03337 53 VLTNDGNAILREIDVAHP-------------AAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIK 119 (480)
T ss_pred EEeccHHHHHHhccccCh-------------HHHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHH
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------heeccCC------CchhHHHHHHHHHHHhccC--c---------cEEEE-
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGRTAAN------EDKRIDVLLTEVMEKVGKE--G---------LFIIY- 134 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~~ss~------~d~~la~li~~av~~vg~~--g---------~I~i~- 134 (459)
||+.|.+.++++|+++++ +|+++.+ +++.|++++++|+..++.+ + .|.++
T Consensus 120 g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~k 199 (480)
T cd03337 120 AYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEK 199 (480)
T ss_pred HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEE
Confidence 999999999999998875 5544432 5678999999999999753 2 13444
Q ss_pred -cCCCccceeEEEEeEEEeccccccccccc-ccccc---CCC---EEEEeccchhhHHHHHHHhhhcccccEEEecCCCc
Q 040169 135 -DEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC---KQP---LFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEF 206 (459)
Q Consensus 135 -~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~---~~~---l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~ 206 (459)
+|++.. ++++++|++|++++.+|.|+.. ++.++ +.| |++++++|++++++.|..| +|++|+.
T Consensus 200 i~Ggs~~-ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~lvi~~k~I~d~al~~L~~~------~I~~v~~--- 269 (480)
T cd03337 200 IPGGEIE-DSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYLVITEKGVSDLAQHYLVKA------GITALRR--- 269 (480)
T ss_pred ecCCCHH-hcccccceEEeccCCCCCCCcEecCCCEEEEecCcceEEEeCCCccHHHHHHHHHC------CcEEEEe---
Confidence 588875 5899999999999999988887 77766 555 4778899999999988876 4577764
Q ss_pred cccccchHHHHHHHhCCeEeeeccccccccccceee-eEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHH
Q 040169 207 EENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSC-KEVV---ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDY 282 (459)
Q Consensus 207 ~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a-~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~ 282 (459)
.++++|+|||++|||+++++.. ++++++||+| +.++ +++++++++++|+++
T Consensus 270 --v~~~~L~rIa~~tGa~ii~~~~--~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~--------------------- 324 (480)
T cd03337 270 --VRKTDNNRIARACGATIVNRPE--ELTESDVGTGAGLFEVKKIGDEYFTFITECKDP--------------------- 324 (480)
T ss_pred --CCHHHHHHHHHHHCCEEecchh--hCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC---------------------
Confidence 4567899999999999998865 3557889995 4444 356778999887664
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhC-CcccCCCcccccCcccchhHHHHHHHHHHh
Q 040169 283 EIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEG-GIIPENSSQVCWQPFASFDLFVYFLSLAVI 356 (459)
Q Consensus 283 ~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~-gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~ 356 (459)
+.+||++||+|+ .+|+++||++++++++++ ++|||||++|
T Consensus 325 --------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E-------------------- 370 (480)
T cd03337 325 --------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATE-------------------- 370 (480)
T ss_pred --------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHH--------------------
Confidence 378999999998 999999999999999999 5999999999
Q ss_pred hhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhc---C-CCCeeEecCCCcccc
Q 040169 357 RVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQ---D-NPDVGYDPARGEYVD 431 (459)
Q Consensus 357 ~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~---~-~~~~Gid~~~g~~~d 431 (459)
+++| ..|++++. .++++|+++++|++||+.||++||+|||+|+.+++.+|++. + +.++|+|+.+|+++|
T Consensus 371 ---~~ls---~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d 444 (480)
T cd03337 371 ---MAVS---HALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVD 444 (480)
T ss_pred ---HHHH---HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCccc
Confidence 9999 99998875 48999999999999999999999999999999999999874 3 567999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 432 VIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 432 ~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|++.|||||+.+|+++|++|+++|+++
T Consensus 445 ~~~~gV~dp~~vk~~~l~~A~e~a~~i 471 (480)
T cd03337 445 MKELGIWDPLAVKAQTYKTAIEAACML 471 (480)
T ss_pred chhccCeEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 27
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-67 Score=563.76 Aligned_cols=365 Identities=16% Similarity=0.204 Sum_probs=315.0
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
.+||||+||+|+|++.|| +|+|++++|++||+++||||||+||||++||++|.+|+++|+||+.|++
T Consensus 52 ~iTnDG~tIlk~l~~~hP-------------~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~ 118 (517)
T cd03336 52 TVTNDGATILKSIGVDNP-------------AAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIE 118 (517)
T ss_pred EEeccHHHHHHHccCcCh-------------HHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------------hee--ccCC----CchhHHHHHHHHHHHhccC---ccEEEE--cCCC
Q 040169 85 EIYMAFEAIKGHLKCRAR---------------VGR--TAAN----EDKRIDVLLTEVMEKVGKE---GLFIIY--DEEK 138 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------------vA~--~ss~----~d~~la~li~~av~~vg~~---g~I~i~--~g~~ 138 (459)
||++|.+.++++|+++++ +|+ ++++ +++.|++++++|+.+++.. ..|.+. +|++
T Consensus 119 g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s 198 (517)
T cd03336 119 GYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGS 198 (517)
T ss_pred HHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCC
Confidence 999999999999988765 444 4555 6899999999999998532 233443 6888
Q ss_pred ccceeEEEEeEEEeccccccccccc-ccccc------------------------------------------------C
Q 040169 139 KKNELKFLRGMKLNWGAVSSFFIDD-ETQTC------------------------------------------------K 169 (459)
Q Consensus 139 ~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~------------------------------------------------~ 169 (459)
+. ++++++|+++++++.++ ++.. ++.++ +
T Consensus 199 ~~-ds~l~~G~v~~~~~~~~-~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~g 276 (517)
T cd03336 199 LK-DSYLDEGFLLDKKIGVN-QPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHG 276 (517)
T ss_pred cc-ceEEEeeEEEecccCCC-CCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 85 68899999999876432 1111 11111 5
Q ss_pred CCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE---
Q 040169 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV--- 246 (459)
Q Consensus 170 ~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~--- 246 (459)
.+++++++.|++.+++.|..+ +|++|++|++. +|+|||++|||+++++... +++++||+|+.|+
T Consensus 277 v~~v~~~~~I~~~~~~~l~~~------~I~av~~v~~~-----~L~rIa~~tGa~ii~~l~~--~~~~~LG~~~~v~~~~ 343 (517)
T cd03336 277 INCFINRQLIYNYPEQLFADA------GIMAIEHADFD-----GVERLALVTGGEIASTFDH--PELVKLGTCKLIEEIM 343 (517)
T ss_pred CeEEEeCCCccHHHHHHHHHC------CcEEEecCCHH-----HHHHHHHHhCCEEecccCC--CCcccccccceEEEEE
Confidence 667777888888888766544 56899988654 5999999999999998653 4577899999986
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHH
Q 040169 247 ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVK 321 (459)
Q Consensus 247 i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k 321 (459)
+++++++++.+|+. ++.+||++||+|+ .+|+++||||+++
T Consensus 344 ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~ 388 (517)
T cd03336 344 IGEDKLIRFSGVAA-----------------------------------GEACTIVLRGASQQILDEAERSLHDALCVLA 388 (517)
T ss_pred ECCeEEEEEEccCC-----------------------------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 46778999987754 3488999999998 9999999999999
Q ss_pred HHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHH
Q 040169 322 AAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIAS 399 (459)
Q Consensus 322 ~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~ 399 (459)
+++++| +|||||++| ++++ ..|++++. .++++|+++++|++||+.||++||+
T Consensus 389 ~~i~~~~vvpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~ 442 (517)
T cd03336 389 QTVKDTRVVLGGGCSE-----------------------MLMA---KAVEELAKKTPGKKSLAIEAFAKALRQLPTIIAD 442 (517)
T ss_pred HHHhCCCEEeCCCHHH-----------------------HHHH---HHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 999999999 9999 99999865 4899999999999999999999999
Q ss_pred hcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 400 ATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 400 NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||+|+.+++.+|++. ++.++|||+.+|+++||++.|||||+.||+++|+.|+++|+++
T Consensus 443 NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 504 (517)
T cd03336 443 NAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMI 504 (517)
T ss_pred hCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 4678999999999999999999999999999999999999875
No 28
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-67 Score=565.41 Aligned_cols=366 Identities=15% Similarity=0.162 Sum_probs=316.5
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
.+||||+||+++|++.|| +|+|++++|++||+++||||||+++|+++||++|.+|+++|+||+.|++
T Consensus 53 ~iTnDG~tIl~~l~~~hP-------------~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~ 119 (525)
T TIGR02344 53 VMTNDGNAILREIDVAHP-------------AAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIR 119 (525)
T ss_pred EEEccHHHHHHhccCCCH-------------HHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------hee--ccCC----CchhHHHHHHHHHHHhccCc-----------cEEEE-
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGR--TAAN----EDKRIDVLLTEVMEKVGKEG-----------LFIIY- 134 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~--~ss~----~d~~la~li~~av~~vg~~g-----------~I~i~- 134 (459)
||+.|.+.++++|+++++ +|+ ++++ +++.|++++++|+..++.++ .|.++
T Consensus 120 g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~k 199 (525)
T TIGR02344 120 AYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEK 199 (525)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEE
Confidence 999999999999998875 443 3343 37899999999999997543 13444
Q ss_pred -cCCCccceeEEEEeEEEeccccccccccc-ccccc--------------------------------------------
Q 040169 135 -DEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-------------------------------------------- 168 (459)
Q Consensus 135 -~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-------------------------------------------- 168 (459)
+|+++. ++++++|+.|++++.++.|+.. ++.++
T Consensus 200 i~Gg~~~-dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i 278 (525)
T TIGR02344 200 IPGGDIE-DSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDI 278 (525)
T ss_pred ecCCChH-hcCcccceEEecccCCCCCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 688885 5899999999999888766554 44333
Q ss_pred --CCC-EEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeecccccccccccee-eeE
Q 040169 169 --KQP-LFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGS-CKE 244 (459)
Q Consensus 169 --~~~-l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~-a~~ 244 (459)
..| ++++.+.+++.+++.|.. .+|++++ +.++++|+|||++|||+++++... +++++||+ |+.
T Consensus 279 ~~~~~~vIi~~k~I~dla~~~l~~------~~I~av~-----~v~~~~LerIa~~tGa~ii~~l~~--l~~~~lG~~~~~ 345 (525)
T TIGR02344 279 IAVKPDLVITEKGVSDLAQHYLLK------ANISAIR-----RVRKTDNNRIARACGATIVNRPEE--LRESDVGTGCGL 345 (525)
T ss_pred HhcCCCEEEeCCCccHHHHHHHhH------CCceEEe-----cCCHHHHHHHHHHhCCeEecchhh--CCHhhcCCcCCE
Confidence 334 445556788877765554 3556764 556789999999999999998653 55788999 998
Q ss_pred EEE---ecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHH
Q 040169 245 VVI---LDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNA 316 (459)
Q Consensus 245 v~i---~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DA 316 (459)
|++ ++++++++++|++++ .+||++||+|+ .+|+++||
T Consensus 346 v~~~~ig~~~~~~~~g~~~~~-----------------------------------~~TIlLrG~t~~~l~E~er~l~DA 390 (525)
T TIGR02344 346 FEVKKIGDEYFTFFTECKDPK-----------------------------------ACTILLRGASKDVLNEIERNLQDA 390 (525)
T ss_pred EEEEEECCeEEEEEEcCCCCC-----------------------------------EEEEEEEcCCHHHHHHHHHHHHHH
Confidence 876 668899999876643 78999999998 99999999
Q ss_pred HHHHHHHHhC-CcccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHH
Q 040169 317 LNAVKAAMEG-GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPV 394 (459)
Q Consensus 317 l~~~k~a~~~-gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip 394 (459)
|+++++++++ ++|||||++| +++| ..|++++. .++++|+++++|++||+.||
T Consensus 391 l~~vk~~~~~~~vvpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~~~~~a~al~~ip 444 (525)
T TIGR02344 391 MAVARNVLLEPKLLPGGGATE-----------------------MAVS---VYLAKKASKLEGVQQWPYRAVADALEIIP 444 (525)
T ss_pred HHHHHHHHhCCCcccCCCHHH-----------------------HHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999988 5999999999 9999 99999865 48999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHhc---C-CCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 395 CTIASATGVDGSAVAEKLLEQ---D-NPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 395 ~~La~NaG~d~~~vl~kl~~~---~-~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
++||+|||+|+.+++.+|++. + ++++|+|+.+|+++||++.|||||+.||+++|++|+++|+++
T Consensus 445 ~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~i 512 (525)
T TIGR02344 445 RTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACML 512 (525)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 3 567999999999999999999999999999999999999875
No 29
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-67 Score=564.17 Aligned_cols=377 Identities=15% Similarity=0.175 Sum_probs=310.4
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|++.|| +|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++
T Consensus 53 ~iTnDG~tIlk~l~~~hP-------------~akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~ 119 (522)
T cd03340 53 TISNDGATILKLLDIVHP-------------AAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIR 119 (522)
T ss_pred EEeccHHHHHHHccccCH-------------HHHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh----------------heeccC------CCchhHHHHHHHHHHHhccCc---cEEEE--cCC
Q 040169 85 EIYMAFEAIKGHLKCRAR----------------VGRTAA------NEDKRIDVLLTEVMEKVGKEG---LFIIY--DEE 137 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~----------------vA~~ss------~~d~~la~li~~av~~vg~~g---~I~i~--~g~ 137 (459)
||+.|.+.+++.|+++++ +|+++. .++++|++++++|+.+++.++ .|.+. +|+
T Consensus 120 g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Gg 199 (522)
T cd03340 120 GYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGG 199 (522)
T ss_pred HHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCC
Confidence 999999999999988764 444442 368999999999999998654 33333 788
Q ss_pred CccceeEEEEeEEEecccccccc---ccc-ccccc------------CCCEEEEeccchh-----hHHHHHHHhhhccc-
Q 040169 138 KKKNELKFLRGMKLNWGAVSSFF---IDD-ETQTC------------KQPLFIIAEDVEV-----EVAGSLILDRICVS- 195 (459)
Q Consensus 138 ~~~d~~~~v~G~~~~~g~~~~~~---~~~-~~~~~------------~~~l~ii~~~i~~-----~al~~l~~n~~~~~- 195 (459)
+.. ++++++|++|+++|.+|+| +.+ ++.++ +.+..+...+++. +....++.++++.+
T Consensus 200 s~~-ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~ 278 (522)
T cd03340 200 SLE-DSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIV 278 (522)
T ss_pred Chh-hceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 6889999999999999876 333 44333 1122222222221 22233344443322
Q ss_pred ---ccEEEecCC------------C---ccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE---EecceEEE
Q 040169 196 ---TKFCLVKPP------------E---FEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV---ILDNEMVI 254 (459)
Q Consensus 196 ---~~i~~vk~~------------~---~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~---i~~~~~~~ 254 (459)
.++++++.+ + +.+.++++|++||++|||+++++... +++++||+|+.|+ ++++++++
T Consensus 279 ~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~--l~~~~LG~~~~v~~~~ig~~~~~~ 356 (522)
T cd03340 279 KSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSN--ITDDVLGTCGLFEERQVGGERYNI 356 (522)
T ss_pred hcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeecccc--CCccccccceEEEEEEECCEEEEE
Confidence 333333333 0 12334678999999999999988653 5578899999998 67888999
Q ss_pred EcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC-c
Q 040169 255 LGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG-I 328 (459)
Q Consensus 255 i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g-v 328 (459)
+.+|..++ .+||++||+|+ .+|+++|||++++++++++ +
T Consensus 357 ~~~~~~~~-----------------------------------~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 401 (522)
T cd03340 357 FTGCPKAK-----------------------------------TCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSV 401 (522)
T ss_pred EECCCCCc-----------------------------------eEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99876533 67888888887 9999999999999999997 9
Q ss_pred ccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHH
Q 040169 329 IPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGSA 407 (459)
Q Consensus 329 VpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~ 407 (459)
|||||++| ++++ ..|++++. .++++++++++|++||+.||++||+|||+|+.+
T Consensus 402 vpGGG~~E-----------------------~~ls---~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~ 455 (522)
T cd03340 402 VAGGGAIE-----------------------MELS---KYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATD 455 (522)
T ss_pred EECcCHHH-----------------------HHHH---HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999 9999 99999865 489999999999999999999999999999999
Q ss_pred HHHHHHhc---CC-CCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 408 VAEKLLEQ---DN-PDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 408 vl~kl~~~---~~-~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
++.+|++. ++ .++|||+.+|+++||++.|||||+.||+++++.|+++|+++
T Consensus 456 ~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~i 510 (522)
T cd03340 456 ILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLI 510 (522)
T ss_pred HHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHH
Confidence 99999875 34 67999999999999999999999999999999999999875
No 30
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.8e-67 Score=553.61 Aligned_cols=366 Identities=23% Similarity=0.295 Sum_probs=324.8
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
..||||+||+|+|++.|| +|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++
T Consensus 45 ~iTnDG~tIlk~i~~~hp-------------~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~ 111 (464)
T cd00309 45 TITNDGATILKEIEVEHP-------------AAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIR 111 (464)
T ss_pred EEEccHHHHHHhccCcCH-------------HHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------heeccCC------CchhHHHHHHHHHHHhcc------CccEEEE--cCCC
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGRTAAN------EDKRIDVLLTEVMEKVGK------EGLFIIY--DEEK 138 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~~ss~------~d~~la~li~~av~~vg~------~g~I~i~--~g~~ 138 (459)
||+.|.+.++++|+++++ +|+++.+ +++.|++++++|+.+++. .+.|.++ +|++
T Consensus 112 g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~ 191 (464)
T cd00309 112 GYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGS 191 (464)
T ss_pred HHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCC
Confidence 999999999999998775 6666654 789999999999999987 4667666 6777
Q ss_pred ccceeEEEEeEEEeccccccccccc-ccccc---CCCE--EEEecc-chhhHHHHHHHhhhcccccEEEecCCCcccccc
Q 040169 139 KKNELKFLRGMKLNWGAVSSFFIDD-ETQTC---KQPL--FIIAED-VEVEVAGSLILDRICVSTKFCLVKPPEFEENCK 211 (459)
Q Consensus 139 ~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~---~~~l--~ii~~~-i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~ 211 (459)
+. ++++++|+.|+++|.+|+|+.. ++.++ +.|| +|++++ |++++++.|.. .+|++|+. .++
T Consensus 192 ~~-ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~lIi~~~~I~~~al~~L~~------~~I~~v~~-----~~~ 259 (464)
T cd00309 192 LE-DSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEYVVIAEKGIDDEALHYLAK------LGIMAVRR-----VRK 259 (464)
T ss_pred cc-cceeeeeEEEecCCCCCCCceeecCceEEEEecCcceEEecCCCcCHHHHHHHHH------CCeEEEEe-----CCH
Confidence 64 6789999999999999999776 77666 6666 667665 99999997775 45678865 457
Q ss_pred chHHHHHHHhCCeEeeeccccccccccceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040169 212 GIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVIL---DNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLE 288 (459)
Q Consensus 212 ~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~ 288 (459)
++|+|||++|||+++++.. .+++++||+|+.|++. +++++++.+++.
T Consensus 260 ~~L~~Ia~~tGa~ii~~~~--~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~---------------------------- 309 (464)
T cd00309 260 EDLERIAKATGATIVSRLE--DLTPEDLGTAGLVEETKIGDEKYTFIEGCKG---------------------------- 309 (464)
T ss_pred HHHHHHHHHhCCEEecccc--cCCcccCccccEEEEEEEcCeeEEEEEecCC----------------------------
Confidence 7899999999999998765 3557889999999754 557888877544
Q ss_pred HHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhC-CcccCCCcccccCcccchhHHHHHHHHHHhhhhccc
Q 040169 289 ERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEG-GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYP 362 (459)
Q Consensus 289 eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~-gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (459)
++.+||++||+|+ .+|+++|||+++++++++ ++|||||++| +++
T Consensus 310 -------~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E-----------------------~~l 359 (464)
T cd00309 310 -------GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAE-----------------------IEL 359 (464)
T ss_pred -------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHH-----------------------HHH
Confidence 3478999999998 999999999999999999 6999999999 999
Q ss_pred cccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcc
Q 040169 363 RARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIF 438 (459)
Q Consensus 363 s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~ 438 (459)
+ ..|++++. .++++++++++|++||+.||++|++|||+|+.+++.+|++. +..++|+|..+|++.||++.|||
T Consensus 360 s---~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~ 436 (464)
T cd00309 360 S---KALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGII 436 (464)
T ss_pred H---HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCe
Confidence 9 99999875 58999999999999999999999999999999999999875 34579999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhc
Q 040169 439 DPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 439 DP~~vk~~al~~A~~~a~~~ 458 (459)
||+.||+++++.|+++|+++
T Consensus 437 dp~~vk~~~l~~A~e~a~~i 456 (464)
T cd00309 437 DPLKVKRQALKSATEAASLI 456 (464)
T ss_pred ecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.3e-67 Score=555.43 Aligned_cols=365 Identities=15% Similarity=0.172 Sum_probs=317.1
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||+|+|+++|| .|+|++++|++||+++||||||+++|+++||+++.+++++|+||+.|++
T Consensus 45 ~iTnDG~tIlk~l~~~hP-------------~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~ 111 (472)
T cd03341 45 FVTSDAATILRELEVQHP-------------AAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIE 111 (472)
T ss_pred EEeCcHHHHHHhccccCH-------------HHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh--------------heec-----cCCCchhHHHHHHHHHHHhccC--ccE-----E--EEcC
Q 040169 85 EIYMAFEAIKGHLKCRAR--------------VGRT-----AANEDKRIDVLLTEVMEKVGKE--GLF-----I--IYDE 136 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~--------------vA~~-----ss~~d~~la~li~~av~~vg~~--g~I-----~--i~~g 136 (459)
||+.|.+.+++.|+++++ ++++ +.++++.|++++++|+.+++.+ +.+ . ..+|
T Consensus 112 g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~G 191 (472)
T cd03341 112 GYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILG 191 (472)
T ss_pred HHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecC
Confidence 999999999999988763 2222 2246889999999999999864 432 2 2278
Q ss_pred CCccceeEEEEeEEEeccccccccccc-ccccc---------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCc
Q 040169 137 EKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC---------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEF 206 (459)
Q Consensus 137 ~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~---------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~ 206 (459)
++.. ++++++|++|++.+.. ++.. ++.++ +.||+|++++|++++++.|.. .+|+++|+|+
T Consensus 192 g~~~-ds~lv~Giv~~~~~~~--~~~~~~n~~Ili~~~~Le~g~~lvi~~~~I~d~al~~l~~------~~I~av~~~~- 261 (472)
T cd03341 192 GSLE-DSKVVRGMVFKREPEG--SVKRVKKAKVAVFSCPFDIGVNVIVAGGSVGDLALHYCNK------YGIMVIKINS- 261 (472)
T ss_pred CCcc-cceEEeeEEEccccCC--CceeccCCcEEEEeccccCCCeEEEECCCCCHHHHHHHHH------CCeEEEEeCC-
Confidence 8885 5799999999876532 2233 44443 788899999999999986442 5678999886
Q ss_pred cccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHH
Q 040169 207 EENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVIL---DNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYE 283 (459)
Q Consensus 207 ~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i~---~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~ 283 (459)
+.+|+|||++|||+++++... +++++||+|+.|++. +++++++.++++.
T Consensus 262 ----~~~Le~Ia~~tGa~ii~~~~~--l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------------------- 313 (472)
T cd03341 262 ----KFELRRLCRTVGATPLPRLGA--PTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------------------- 313 (472)
T ss_pred ----HHHHHHHHHHhCCEEeccccc--CCHhHCCCceEEEEEEECCeeEEEEEccCCC----------------------
Confidence 346999999999999987653 457889999999865 4889999876431
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhh
Q 040169 284 IKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIR 357 (459)
Q Consensus 284 ~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~ 357 (459)
++++||++||+|+ .+|+++||||++++++++| +|||||++|
T Consensus 314 ------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e--------------------- 360 (472)
T cd03341 314 ------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATE--------------------- 360 (472)
T ss_pred ------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHH---------------------
Confidence 4589999999998 9999999999999999999 999999999
Q ss_pred hhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHh---cCCCCeeEecCCC--cccc
Q 040169 358 VLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVAEKLLE---QDNPDVGYDPARG--EYVD 431 (459)
Q Consensus 358 ~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl~kl~~---~~~~~~Gid~~~g--~~~d 431 (459)
++++ ..|++++. .++++++++++|++||+.||++||+|||+|+.+++.+|+. .++.++|||+.+| +++|
T Consensus 361 --~~ls---~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d 435 (472)
T cd03341 361 --IELA---KKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKD 435 (472)
T ss_pred --HHHH---HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccC
Confidence 9999 99998864 4889999999999999999999999999999999999976 3466899999999 9999
Q ss_pred ccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 432 VIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 432 ~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|++.|||||+.||+++|++|+++|+++
T Consensus 436 ~~~~gI~dp~~vk~~~l~~A~e~a~~i 462 (472)
T cd03341 436 AKEAGIFDHLATKKWAIKLATEAAVTV 462 (472)
T ss_pred hhhccceecHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 32
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2.4e-66 Score=557.77 Aligned_cols=365 Identities=16% Similarity=0.200 Sum_probs=312.4
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||+|+||++||++|.+|+++|+||+.|++
T Consensus 64 ~iTnDG~TIlk~i~~~hP-------------~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~ 130 (533)
T PTZ00212 64 TVTNDGATILKSVWLDNP-------------AAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIE 130 (533)
T ss_pred EEeccHHHHHHhccCcCH-------------HHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 579999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------------hee--ccCC----CchhHHHHHHHHHHHhccC---cc--EEEEcCCC
Q 040169 85 EIYMAFEAIKGHLKCRAR---------------VGR--TAAN----EDKRIDVLLTEVMEKVGKE---GL--FIIYDEEK 138 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------------vA~--~ss~----~d~~la~li~~av~~vg~~---g~--I~i~~g~~ 138 (459)
||++|.+.+++.|+++++ +|+ ++++ ..+.|++++++|+..+... .. +...+|++
T Consensus 131 g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggs 210 (533)
T PTZ00212 131 GWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGT 210 (533)
T ss_pred HHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcC
Confidence 999999999999998875 443 3443 4678999999999888432 12 33447998
Q ss_pred ccceeEEEEeEEEeccccccccccc-ccccc------------------------------------------------C
Q 040169 139 KKNELKFLRGMKLNWGAVSSFFIDD-ETQTC------------------------------------------------K 169 (459)
Q Consensus 139 ~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~------------------------------------------------~ 169 (459)
+. ++++++|+++++++.++ ++.. ++.++ +
T Consensus 211 i~-ds~lv~G~v~~~~~~~~-~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~g 288 (533)
T PTZ00212 211 LR-DSYLEDGFILEKKIGVG-QPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHG 288 (533)
T ss_pred cc-ccEEEEeEEEecccCCC-CCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 85 68899999999976442 2222 22211 5
Q ss_pred CCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE---
Q 040169 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV--- 246 (459)
Q Consensus 170 ~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~--- 246 (459)
..++++.+.|++.+++.|..+ +|++||++. +.+++|||++|||+++++... +++++||+|+.|+
T Consensus 289 v~vvv~~~~I~d~a~~~L~~~------~I~avr~v~-----~~~l~rIa~~tGa~iis~l~~--~~~~~LG~~~~v~~~~ 355 (533)
T PTZ00212 289 CNVFINRQLIYNYPEQLFAEA------GIMAIEHAD-----FDGMERLAAALGAEIVSTFDT--PEKVKLGHCDLIEEIM 355 (533)
T ss_pred CeEEEeCCCccHHHHHHHHHC------CCEEEecCC-----HHHHHHHHHHhCCEEeecCCC--CCHHHccCCceEEEEE
Confidence 556667777777777766543 457887443 346999999999999998653 4577899999998
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHH
Q 040169 247 ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVK 321 (459)
Q Consensus 247 i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k 321 (459)
+++++++++++|.. ++.+||++||+|+ .+|+++||||++|
T Consensus 356 ig~~~~~~~~~~~~-----------------------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~ 400 (533)
T PTZ00212 356 IGEDKLIRFSGCAK-----------------------------------GEACTIVLRGASTHILDEAERSLHDALCVLS 400 (533)
T ss_pred ECCeEEEEEEccCC-----------------------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHH
Confidence 78889999988643 3589999999998 9999999999999
Q ss_pred HHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHH
Q 040169 322 AAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIAS 399 (459)
Q Consensus 322 ~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~ 399 (459)
+++++| +|||||++| ++++ ..|++++. .++++++++++|++||+.||++||+
T Consensus 401 ~~i~~~~vVpGGGa~e-----------------------~~ls---~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~ 454 (533)
T PTZ00212 401 QTVKDTRVVLGGGCSE-----------------------MLMA---NAVEELAKKVEGKKSLAIEAFAKALRQIPTIIAD 454 (533)
T ss_pred HHhhCCCEeeCCCHHH-----------------------HHHH---HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 999999999 9999 99999865 4899999999999999999999999
Q ss_pred hcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 400 ATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 400 NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||+|+.+++.+|++. +++++|||+.+|++.||++.|||||+.||+++|+.|+++|+++
T Consensus 455 NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~i 516 (533)
T PTZ00212 455 NGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMI 516 (533)
T ss_pred hCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 4678999999999999999999999999999999999999975
No 33
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.1e-66 Score=552.33 Aligned_cols=365 Identities=16% Similarity=0.183 Sum_probs=310.0
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++||||+||+|+|++.|| +|+|++++|++||+++||||||+|||+++||++|.+++++|+||+.|++
T Consensus 53 ~iTnDG~tIlk~l~i~hP-------------~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~ 119 (519)
T TIGR02341 53 MVTNDGATILKSIGVDNP-------------AAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIIS 119 (519)
T ss_pred EEeccHHHHHHHccCcCh-------------HHHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------------heeccC------CCchhHHHHHHHHHHHhccC---ccEEEE--cCCC
Q 040169 85 EIYMAFEAIKGHLKCRAR---------------VGRTAA------NEDKRIDVLLTEVMEKVGKE---GLFIIY--DEEK 138 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------------vA~~ss------~~d~~la~li~~av~~vg~~---g~I~i~--~g~~ 138 (459)
||+.|.+.++++|+++++ +|+++. .+.+.|++++++|+..+... ..|.+. +|++
T Consensus 120 g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s 199 (519)
T TIGR02341 120 GYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGS 199 (519)
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCC
Confidence 999999999999988775 343332 23577899999999887321 235554 6888
Q ss_pred ccceeEEEEeEEEeccccccccccc-ccccc------------------------------------------------C
Q 040169 139 KKNELKFLRGMKLNWGAVSSFFIDD-ETQTC------------------------------------------------K 169 (459)
Q Consensus 139 ~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~------------------------------------------------~ 169 (459)
+. ++++++|+++++.+.++ ++.. ++.++ +
T Consensus 200 ~~-~s~l~~G~v~~~~~~~~-~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g 277 (519)
T TIGR02341 200 LN-DSYLDEGFLLEKKIGVN-QPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHN 277 (519)
T ss_pred cc-cceEEeeEEEeccCCCC-CceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 85 78899999999875432 2211 11111 5
Q ss_pred CCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE---
Q 040169 170 QPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV--- 246 (459)
Q Consensus 170 ~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~--- 246 (459)
..++++++.|++.+++.|.. .+|+++++|+++ +|+|||++|||+++++... +++++||+|+.|+
T Consensus 278 ~~~v~~~~~I~~~~~~~l~~------~~I~~v~~~~~~-----~l~~ia~~tGa~ii~~~~~--~~~~~lG~~~~v~~~~ 344 (519)
T TIGR02341 278 INCFINRQLIYNYPEQLFAD------AGVMAIEHADFE-----GIERLALVTGGEIVSTFDH--PELVKLGSCDLIEEIM 344 (519)
T ss_pred CcEEEECCcCCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHhCCEEeccccc--CCccccccCceEEEEE
Confidence 55666677777777765544 356789888643 7999999999999998653 4578899999886
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHH
Q 040169 247 ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVK 321 (459)
Q Consensus 247 i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k 321 (459)
+++++++++.+|+. ++.+||++||+|+ .+|+++|||+++|
T Consensus 345 ig~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~ 389 (519)
T TIGR02341 345 IGEDKLLKFSGVKL-----------------------------------GEACTIVLRGATQQILDESERSLHDALCVLS 389 (519)
T ss_pred ECCEEEEEEEcCCC-----------------------------------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 46778999988754 3489999999998 9999999999999
Q ss_pred HHHhC-CcccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHH
Q 040169 322 AAMEG-GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIAS 399 (459)
Q Consensus 322 ~a~~~-gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~ 399 (459)
+++++ ++|||||++| ++++ ..|++++. .++++++++++|++||+.||++||+
T Consensus 390 ~~~~~~~vvpGGGa~e-----------------------~~ls---~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~ 443 (519)
T TIGR02341 390 QTVKESRTVLGGGCSE-----------------------MLMS---KAVAVEAQKVPGKEALAVEAFARALRQLPTIIAD 443 (519)
T ss_pred HHHhCCCEEeCCCHHH-----------------------HHHH---HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 5999999999 9999 99998865 4899999999999999999999999
Q ss_pred hcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 400 ATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 400 NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|||+|+.+++.+|++. ++.++|||+.+|+++||++.|||||+.||++++++|+++|+++
T Consensus 444 NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 505 (519)
T TIGR02341 444 NAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVI 505 (519)
T ss_pred HCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 4567999999999999999999999999999999999999986
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-66 Score=510.31 Aligned_cols=378 Identities=14% Similarity=0.163 Sum_probs=317.4
Q ss_pred ccCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 040169 4 SRLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLK 83 (459)
Q Consensus 4 ~~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~ 83 (459)
.+.||||+||+|.+++.|| +||.|+++|++||.|+||||||||+||+|+|+++.++|+.|+||+.|+
T Consensus 56 ~tIsNDGATIlKlldivhP-------------aaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~ii 122 (543)
T KOG0361|consen 56 TTISNDGATILKLLDIVHP-------------AAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLII 122 (543)
T ss_pred EEEecCcHHHHHHHhhcCh-------------hHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHH
Confidence 3689999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh----------------heec--cC----CCchhHHHHHHHHHHHhccC---ccEEEE--cC
Q 040169 84 DEIYMAFEAIKGHLKCRAR----------------VGRT--AA----NEDKRIDVLLTEVMEKVGKE---GLFIIY--DE 136 (459)
Q Consensus 84 ~G~~~a~~~~l~~L~~~s~----------------vA~~--ss----~~d~~la~li~~av~~vg~~---g~I~i~--~g 136 (459)
++|++|...+++.|+++++ +|.| || ++.++|+++++||+..++.+ ..|-++ +|
T Consensus 123 r~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~G 202 (543)
T KOG0361|consen 123 RAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPG 202 (543)
T ss_pred HHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCC
Confidence 9999999999999999876 4433 33 36899999999999998743 234444 89
Q ss_pred CCccceeEEEEeEEEeccccccccccc----ccccc---CCCEEEEec---------cchh-----hHHHHHHHhhhccc
Q 040169 137 EKKKNELKFLRGMKLNWGAVSSFFIDD----ETQTC---KQPLFIIAE---------DVEV-----EVAGSLILDRICVS 195 (459)
Q Consensus 137 ~~~~d~~~~v~G~~~~~g~~~~~~~~~----~~~~~---~~~l~ii~~---------~i~~-----~al~~l~~n~~~~~ 195 (459)
|+++ ++.+++|+.|++.|....|... .+.++ +..|.+.++ ++++ +|.+.++.++++.+
T Consensus 203 G~~~-dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki 281 (543)
T KOG0361|consen 203 GAME-DSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKI 281 (543)
T ss_pred Cccc-hhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 9997 4679999999998765444222 22222 333333332 2222 46677777776544
Q ss_pred ----ccEEEecCCC-------c--------cccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE---EecceEE
Q 040169 196 ----TKFCLVKPPE-------F--------EENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV---ILDNEMV 253 (459)
Q Consensus 196 ----~~i~~vk~~~-------~--------~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~---i~~~~~~ 253 (459)
.+++.-|.|. | |+..+++|.++..+|||.+.++.. ++.++.||.|..++ ++.++|.
T Consensus 282 ~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~--~i~~~~LG~C~~FeE~QvG~eRyN 359 (543)
T KOG0361|consen 282 HESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVS--DIKEEVLGTCALFEERQVGGERYN 359 (543)
T ss_pred HhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhh--hcchhhcchhhhHHHHhhcchhhh
Confidence 4666656552 1 333478999999999999998765 35688999999997 6899999
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC-
Q 040169 254 ILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG- 327 (459)
Q Consensus 254 ~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g- 327 (459)
+|+||+..+ +||+++||+.+ .+|++|||++++|.|+++.
T Consensus 360 ~Fegcp~ak-----------------------------------tcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 360 LFEGCPKAK-----------------------------------TCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhcCCCccc-----------------------------------eeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999987743 56666655554 9999999999999999986
Q ss_pred cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhcC-CchhHHHHHHHHHHHhhHHHHHHHhcCCChH
Q 040169 328 IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTT-SLGGKIGVQLLQQALKMPVCTIASATGVDGS 406 (459)
Q Consensus 328 vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~ 406 (459)
+|+|||+.| |++| +.|++|+.. .|++|+-+.+|++||+.||++||+|||+|..
T Consensus 405 vVaGGGaiE-----------------------MElS---k~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~ 458 (543)
T KOG0361|consen 405 VVAGGGAIE-----------------------MELS---KYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDAT 458 (543)
T ss_pred EeeCCceee-----------------------ehHH---HHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHH
Confidence 999999999 9999 999999965 9999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 407 AVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 407 ~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
++++|||.. |..|+|+|.+++.+.|+++.+||||..||++++..|+++|++|
T Consensus 459 ~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lI 513 (543)
T KOG0361|consen 459 NILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLI 513 (543)
T ss_pred HHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhhe
Confidence 999999975 6889999999999999999999999999999999999999976
No 35
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-60 Score=469.51 Aligned_cols=370 Identities=17% Similarity=0.224 Sum_probs=303.6
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
.+||||+||||.|.+.+| +||+|+++|+-||+|+|||||||+|||++||++|.+|+++.+||+.|++
T Consensus 57 ~VTNDGAtILksi~vDnp-------------aAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~ 123 (527)
T KOG0363|consen 57 MVTNDGATILKSIGVDNP-------------AAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIIS 123 (527)
T ss_pred EEecchHHHHHhcCCCCc-------------hhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 469999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------------heec--cC----CCchhHHHHHHHHHHHhccCc-----cEEEEcCCC
Q 040169 85 EIYMAFEAIKGHLKCRAR---------------VGRT--AA----NEDKRIDVLLTEVMEKVGKEG-----LFIIYDEEK 138 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------------vA~~--ss----~~d~~la~li~~av~~vg~~g-----~I~i~~g~~ 138 (459)
|||+|...+++.|.+.++ +|+| +| ...++|+++.++|+.++...+ .|..+.||+
T Consensus 124 GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~ 203 (527)
T KOG0363|consen 124 GYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGK 203 (527)
T ss_pred HHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCc
Confidence 999999999999998876 5543 33 357899999999999985433 345558999
Q ss_pred ccceeEEEEeEEEeccc--ccccccccccccc---CCCE-----EEEec--cchh-------------------------
Q 040169 139 KKNELKFLRGMKLNWGA--VSSFFIDDETQTC---KQPL-----FIIAE--DVEV------------------------- 181 (459)
Q Consensus 139 ~~d~~~~v~G~~~~~g~--~~~~~~~~~~~~~---~~~l-----~ii~~--~i~~------------------------- 181 (459)
+. ++++-+|+.+++.+ -.|..+ ++.++ +.|+ -|+.. .++.
T Consensus 204 l~-dSfLDeGFlL~K~igv~qpkri--ena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~h 280 (527)
T KOG0363|consen 204 LE-DSFLDEGFLLDKKIGVNQPKRI--ENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKH 280 (527)
T ss_pred cc-cccccccceeccccCCCCcccc--cccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 96 57799999999854 344333 33322 1111 11111 0110
Q ss_pred ----hHHHHHHHhhhcc---cccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE---Eecce
Q 040169 182 ----EVAGSLILDRICV---STKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV---ILDNE 251 (459)
Q Consensus 182 ----~al~~l~~n~~~~---~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~---i~~~~ 251 (459)
.....|++|-.+. -..|.++++.+|. .+|+|+..|||.++|++++ ++..+||+|+.++ |++++
T Consensus 281 giN~FiNRQLiYnyPeqLf~dagi~aIEHADFd-----GiERLalvtGGeI~STFd~--p~~~klG~C~~IeeimiGed~ 353 (527)
T KOG0363|consen 281 GINVFINRQLIYNYPEQLFADAGIMAIEHADFD-----GIERLALVTGGEIVSTFDN--PELVKLGECDLIEEIMIGEDK 353 (527)
T ss_pred CCcEEeehhHhhcCHHHHHhhcCcceeecccch-----hHHHHhhcccceeeeccCC--cchhccccchhhHHHhcCccc
Confidence 0001122221111 1256677777765 6899999999999999875 4467899998875 78999
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhC
Q 040169 252 MVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEG 326 (459)
Q Consensus 252 ~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~ 326 (459)
++-|.|+.- |-.|+|+++|+|+ .+|++|||||++....++
T Consensus 354 li~FSGv~~-----------------------------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~e 398 (527)
T KOG0363|consen 354 LIKFSGVKL-----------------------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKE 398 (527)
T ss_pred eeeeccccc-----------------------------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 988888633 4588999999997 999999999999888876
Q ss_pred -CcccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCC
Q 040169 327 -GIIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVD 404 (459)
Q Consensus 327 -gvVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d 404 (459)
.+|.|||++| |.++ ..+.+++. ..|++..++++|++||.++|.+||.|+|||
T Consensus 399 srvv~GgG~sE-----------------------m~Ma---~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~d 452 (527)
T KOG0363|consen 399 SRVVLGGGCSE-----------------------MLMA---KAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYD 452 (527)
T ss_pred ceeeecCCcHH-----------------------HHHH---HHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCC
Confidence 5999999999 9998 99999986 499999999999999999999999999999
Q ss_pred hHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 405 GSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 405 ~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+.+++.+||+. |+.++|+|+++|++.||.+.||+|++++|.+.+.+|.+.|.+|
T Consensus 453 saelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~i 509 (527)
T KOG0363|consen 453 SAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMI 509 (527)
T ss_pred HHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999986 6789999999999999999999999999999999999999875
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=2.7e-59 Score=495.95 Aligned_cols=365 Identities=19% Similarity=0.303 Sum_probs=316.6
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
..||||+||+|.+++.|| .|+++++++++||+++||||||+++|+++||+++.+++++|+||+.|++
T Consensus 26 ~iTndg~tIl~~l~~~~P-------------~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~ 92 (485)
T PF00118_consen 26 IITNDGATILKSLKINHP-------------IAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIR 92 (485)
T ss_dssp EEESSHHHHHHHSTBSSH-------------HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred EEEechhHHHHHhhhccc-------------hhhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhh
Confidence 589999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh-----------heeccCCC------chhHHHHHHHHHHHhc------cCccEEEEcCCCccc
Q 040169 85 EIYMAFEAIKGHLKCRAR-----------VGRTAANE------DKRIDVLLTEVMEKVG------KEGLFIIYDEEKKKN 141 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~-----------vA~~ss~~------d~~la~li~~av~~vg------~~g~I~i~~g~~~~d 141 (459)
||+.|.+.+++.|+++++ +|.++.+. .+.|++++++|+..+. ..+ +....|++. .
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~-i~~i~g~~~-~ 170 (485)
T PF00118_consen 93 GLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIK-IIKIPGGSI-S 170 (485)
T ss_dssp HHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEE-EEEEESSSS-G
T ss_pred hhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchh-hhhhccccc-c
Confidence 999999999999998744 56555443 3899999999994332 212 223356777 5
Q ss_pred eeEEEEeEEEeccccccccccc-ccccc----------------------------------------------CCCEEE
Q 040169 142 ELKFLRGMKLNWGAVSSFFIDD-ETQTC----------------------------------------------KQPLFI 174 (459)
Q Consensus 142 ~~~~v~G~~~~~g~~~~~~~~~-~~~~~----------------------------------------------~~~l~i 174 (459)
++++++|+.|+++|.++.|+.+ ++.++ +.++++
T Consensus 171 dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi 250 (485)
T PF00118_consen 171 DSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLII 250 (485)
T ss_dssp GEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred ccccccceeeeccccccccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceee
Confidence 7889999999999998866544 33322 789999
Q ss_pred EeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEE---EEecce
Q 040169 175 IAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEV---VILDNE 251 (459)
Q Consensus 175 i~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v---~i~~~~ 251 (459)
++++|++.+++.|..|++ .+++ ..+++.|++|+.+|||+++++..+ ++++++|+|+.+ ++++++
T Consensus 251 ~~~~i~~~~l~~l~~~~I------~~i~-----~v~~~~l~~i~~~tg~~ii~~~~~--l~~~~lG~~~~v~~~~i~~~~ 317 (485)
T PF00118_consen 251 SQKSIDDEALQYLNKNGI------LVIR-----RVSKEDLERIARATGASIISSLDD--LSDEDLGFCKSVEEREIGNKK 317 (485)
T ss_dssp ESSEBTHHHHHHHHHCTH------EEES-----SEHHHHHHHHHHHHTSBEBSSCGG--STGGGSEEEEEEEEEEETSSE
T ss_pred eecccccccchhhhhhhh------hccc-----cchHHHHHhhhcccCCcEeccccc--ccchhhhhhhhhhhccccccc
Confidence 999999999998887765 3443 336678999999999999988753 556789999999 678999
Q ss_pred EEEEcC--CCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHH
Q 040169 252 MVILGG--SGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAM 324 (459)
Q Consensus 252 ~~~i~~--~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~ 324 (459)
++++++ + ..+..+||++||+++ .+|+++||++++++++
T Consensus 318 ~~~~~~~~~-----------------------------------~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~ 362 (485)
T PF00118_consen 318 YIFIEGIGC-----------------------------------LSSKICTILLRGPTEFELEERERSIHDALKVLRSAL 362 (485)
T ss_dssp EEEEEEHSE-----------------------------------SSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc-----------------------------------cccCceEEEeccccchhHHHHHHHHHHHHHHHHHhc
Confidence 999884 2 245689999999998 8999999999999999
Q ss_pred hCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcC
Q 040169 325 EGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATG 402 (459)
Q Consensus 325 ~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG 402 (459)
+++ +|||||++| ++++ ..|++++. .++++++++++|++||+.||++|++|||
T Consensus 363 ~~~~vvpGGG~~e-----------------------~~l~---~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 363 KDGGVVPGGGATE-----------------------LHLS---KALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp HSSEEEETTTHHH-----------------------HHHH---HHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred cCCceeecCcchh-----------------------hhhh---hhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccC
Confidence 965 999999999 9999 99988875 4889999999999999999999999999
Q ss_pred CChHHHHHHHHh--cCCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 403 VDGSAVAEKLLE--QDNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 403 ~d~~~vl~kl~~--~~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+|+.+++++|++ ..++++|||..+|+++||++.|||||+.+|+++++.|+++|+++
T Consensus 417 ~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~i 474 (485)
T PF00118_consen 417 LDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLI 474 (485)
T ss_dssp STHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999988 34569999999999999999999999999999999999999875
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-59 Score=459.85 Aligned_cols=372 Identities=13% Similarity=0.158 Sum_probs=319.0
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
..||||+||||.|.+.|| +|+||+++|.+||.++||||||||+|||+||..+.+|+++|+||+.|..
T Consensus 63 ~iTNDGaTILk~m~vlhP-------------~akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsd 129 (534)
T KOG0358|consen 63 IITNDGATILKQMNVLHP-------------AAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISD 129 (534)
T ss_pred EEecChHHHHHHHhhhCh-------------HHHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhH
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh------------heecc------CCCchhHHHHHHHHHHHhccCc--------c--EEEEcC
Q 040169 85 EIYMAFEAIKGHLKCRAR------------VGRTA------ANEDKRIDVLLTEVMEKVGKEG--------L--FIIYDE 136 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~------------vA~~s------s~~d~~la~li~~av~~vg~~g--------~--I~i~~g 136 (459)
.|+.|.++++++|.+|+. -|+|| |.++..++.+.++|+.++-... . |..+.|
T Consensus 130 sfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklG 209 (534)
T KOG0358|consen 130 SFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLG 209 (534)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhC
Confidence 999999999999999876 34444 4578899999999999874311 2 333478
Q ss_pred CCccceeEEEEeEEEeccccccccccc-ccccc-----------------------------------------------
Q 040169 137 EKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC----------------------------------------------- 168 (459)
Q Consensus 137 ~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~----------------------------------------------- 168 (459)
|.+ |++++++|++|++......-+++ |+.++
T Consensus 210 gtv-dDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~ 288 (534)
T KOG0358|consen 210 GTV-DDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKA 288 (534)
T ss_pred Ccc-chhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 67999999999875432223444 44433
Q ss_pred CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEE-
Q 040169 169 KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVI- 247 (459)
Q Consensus 169 ~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i- 247 (459)
+.+++++++.|=.++++.|+++-+. .++|++||.. -++++|.+++.+|++++.+.+- +.++.||+++.++.
T Consensus 289 gcnvLliQKSILRdavsDLAlHfL~-klkimvikdi-----eRediefick~l~c~Pia~id~--f~~d~Lg~adlveE~ 360 (534)
T KOG0358|consen 289 GCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIKDI-----EREDIEFICKTLGCKPIADIDH--FTADKLGSADLVEET 360 (534)
T ss_pred CCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEccc-----cHhhHHHHHhhcCCeecchhhh--cChhhcCcchhhhhc
Confidence 7899999999998888877766543 2688888754 3457999999999999988653 45889999999874
Q ss_pred ---ecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHH
Q 040169 248 ---LDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNA 319 (459)
Q Consensus 248 ---~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~ 319 (459)
++.+++-+.|..+ .|..++|++||++. .+|++|||||+
T Consensus 361 ~~~G~gkivk~tg~~n----------------------------------~g~tvsil~RGsn~lvleEaeRSlhDALCV 406 (534)
T KOG0358|consen 361 DSSGEGKIVKITGIQN----------------------------------AGRTVSILLRGSNKLVLEEAERSLHDALCV 406 (534)
T ss_pred ccCCCccEEEEEEeec----------------------------------CCCceEEEEecCchhhhHHHhhhhhhhhHH
Confidence 4557777776543 25678999999987 99999999999
Q ss_pred HHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhcC-CchhHHHHHHHHHHHhhHHHHH
Q 040169 320 VKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTT-SLGGKIGVQLLQQALKMPVCTI 397 (459)
Q Consensus 320 ~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~~-~~~e~~gi~~~a~AL~~ip~~L 397 (459)
+|.-.+.. .+||||+.| |+++ ..|..++.. .|.+.|++++|++||+.||.+|
T Consensus 407 irCLvk~r~li~GGGapE-----------------------ieia---~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tL 460 (534)
T KOG0358|consen 407 IRCLVKKRALIAGGGAPE-----------------------IEIA---LRLSALARTLEGVEAYCWRAFADALEVIPYTL 460 (534)
T ss_pred HHhhhhccceecCCCCcc-----------------------hHHH---HHHHHHHhhhccchhHHHHHHHHHHhcccHhH
Confidence 99998875 899999999 9999 999998854 8899999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 398 ASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 398 a~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|+|||++|..++.+||+. |+.+.|+|+++|.+.||++..|+.|+.|-.+++..|+|...+|
T Consensus 461 AeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~I 524 (534)
T KOG0358|consen 461 AENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSI 524 (534)
T ss_pred HhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHH
Confidence 999999999999999975 6789999999999999999999999999999999999998775
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-54 Score=432.95 Aligned_cols=367 Identities=15% Similarity=0.195 Sum_probs=316.3
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
+.||||+||++.+++.|| ++|+|++.++.||+++|||||+|+++|++||+.+.+|+..++||+.|+.
T Consensus 56 t~TndgAtiL~~l~V~HP-------------a~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~ 122 (545)
T KOG0360|consen 56 TITNDGATILSLLEVEHP-------------AAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIIS 122 (545)
T ss_pred EEeccHHHHHHhhhhcch-------------HHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhh
Confidence 469999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hh------------heecc------CCCchhHHHHHHHHHHHhcc---Cc---------cEEE
Q 040169 85 EIYMAFEAIKGHLKCR-AR------------VGRTA------ANEDKRIDVLLTEVMEKVGK---EG---------LFII 133 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~-s~------------vA~~s------s~~d~~la~li~~av~~vg~---~g---------~I~i 133 (459)
||+.|...+++++.+- ++ +|+++ .+..++|++++++|+..+.. +| +|..
T Consensus 123 gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILk 202 (545)
T KOG0360|consen 123 GYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILK 202 (545)
T ss_pred hHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEe
Confidence 9999999999998853 22 44332 34579999999999987631 22 2333
Q ss_pred EcCCCccceeEEEEeEEEeccccccccccc-ccccc--------------------------------------------
Q 040169 134 YDEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-------------------------------------------- 168 (459)
Q Consensus 134 ~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-------------------------------------------- 168 (459)
-+|.+.. |+.++.|+.+++..++..|+.+ .+.++
T Consensus 203 ahG~s~~-eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kI 281 (545)
T KOG0360|consen 203 AHGKSQI-ESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKI 281 (545)
T ss_pred cCCccch-hheeecceeeeccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHH
Confidence 3677764 6789999999999988888776 55544
Q ss_pred ---CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeecccc----cccccccee
Q 040169 169 ---KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNS----LLARLKLGS 241 (459)
Q Consensus 169 ---~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~----~l~~~~LG~ 241 (459)
+.+++++.++||+..+..|+..+ +++|| +.++++|+.||++||++++++..++ .+++..+|+
T Consensus 282 l~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~ 350 (545)
T KOG0360|consen 282 LATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGS 350 (545)
T ss_pred HhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HHHHHHHHHHHHhhCCeeeehhhccccccccChhhccc
Confidence 78899999999999999888654 24553 4568899999999999999987532 345889999
Q ss_pred eeEEE---EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhh
Q 040169 242 CKEVV---ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRI 313 (459)
Q Consensus 242 a~~v~---i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i 313 (459)
|++|. |++|+++.+.+.+. ..+.|+++|+++ ++|++
T Consensus 351 a~evvqeri~dde~ilikg~ka------------------------------------~~aSiILrgaNd~~~DEmers~ 394 (545)
T KOG0360|consen 351 ADEVVQERIGDDELILIKGTKA------------------------------------TSASIILRGANDFMLDEMERSL 394 (545)
T ss_pred hhHHHHHhcccceeEEeccCcc------------------------------------ceeeEEEecCCcccHhhhccch
Confidence 99985 78999999887432 156788888887 99999
Q ss_pred hHHHHHHHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhcC-CchhHHHHHHHHHHHh
Q 040169 314 VNALNAVKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQTT-SLGGKIGVQLLQQALK 391 (459)
Q Consensus 314 ~DAl~~~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~~-~~~e~~gi~~~a~AL~ 391 (459)
|||||++|..++++ +|||||++| .+++ .+|+.|+.. ..+||.++..|++||.
T Consensus 395 hdaL~VlkrtLes~~vvpGGG~vE-----------------------~aLs---~yle~~a~s~~srE~laiaefa~all 448 (545)
T KOG0360|consen 395 HDALCVLKRTLESKSVVPGGGAVE-----------------------TALS---IYLENFATSVGSREQLAIAEFAAALL 448 (545)
T ss_pred hhHHHHHHHHhccCccccCccHHH-----------------------HHHH---HHHHhhcccCccHHHHHHHHHHHHHh
Confidence 99999999999998 999999999 9999 999999865 7899999999999999
Q ss_pred hHHHHHHHhcCCChHHHHHHHHhc-----C------CCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 392 MPVCTIASATGVDGSAVAEKLLEQ-----D------NPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 392 ~ip~~La~NaG~d~~~vl~kl~~~-----~------~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
.||++|+-|++.|+.|.+.++|.. . ..++|+|+.+|++.|.++.|+++|..+|...|+.|++.|..+
T Consensus 449 ~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaiti 526 (545)
T KOG0360|consen 449 SIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITI 526 (545)
T ss_pred cchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhh
Confidence 999999999999999999999864 1 348999999999999999999999999999999999998764
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-52 Score=417.22 Aligned_cols=366 Identities=17% Similarity=0.166 Sum_probs=313.4
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
-|||||+.|+|+|++.|| +|+.+.++|.+||+|+|||||||++||+|+|..+..++++|+||+.|++
T Consensus 56 ~~tndg~ailrei~Vahp-------------aaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~k 122 (527)
T KOG0364|consen 56 VLTNDGNAILREIDVAHP-------------AAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIK 122 (527)
T ss_pred EEecCcHHHHHHHhhcCc-------------chhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHH
Confidence 379999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh-----------------hee-ccCCCchhHHHHHHHHHHHhccC-cc-EEEE--------cC
Q 040169 85 EIYMAFEAIKGHLKCRAR-----------------VGR-TAANEDKRIDVLLTEVMEKVGKE-GL-FIIY--------DE 136 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~-----------------vA~-~ss~~d~~la~li~~av~~vg~~-g~-I~i~--------~g 136 (459)
.|.+|++.++..|++++. |.+ .-+.+++.++++..+|+++++.+ |. |.++ +|
T Consensus 123 a~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpg 202 (527)
T KOG0364|consen 123 AYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPG 202 (527)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCc
Confidence 999999999999997765 111 12346778899999999999865 32 3222 78
Q ss_pred CCccceeEEEEeEEEeccccccccccc-ccccc----------------------------------------------C
Q 040169 137 EKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC----------------------------------------------K 169 (459)
Q Consensus 137 ~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~----------------------------------------------~ 169 (459)
+.++ ++++++|+.+++...||.|... ++..+ -
T Consensus 203 g~l~-~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v 281 (527)
T KOG0364|consen 203 GLLE-DSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAV 281 (527)
T ss_pred cccc-ccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHee
Confidence 8886 5789999999999999977544 44333 2
Q ss_pred CC-EEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeecccccccccccee-eeEEEE
Q 040169 170 QP-LFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGS-CKEVVI 247 (459)
Q Consensus 170 ~~-l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~-a~~v~i 247 (459)
+| |++..+++++.+.+.|..+++. + .++.||.+..+++++||++++++.+ +|.+.+.|. |+.+++
T Consensus 282 ~pDlVitekG~sdla~hyl~k~~iT------~-----~rr~rKtDn~ria~acga~iv~rpe--dl~e~dvGt~agLf~~ 348 (527)
T KOG0364|consen 282 KPDLVITEKGVSDLAQHYLLKANIT------A-----IRRLRKTDNNRIARACGARIVNRPE--DLPERDVGTGAGLFEV 348 (527)
T ss_pred cccEEEeccchhHHHHHHHHhcCch------h-----hhhhhccccchhhhhcCceeccChh--hCchhccCcccceeee
Confidence 44 5555568888888877766542 2 3567899999999999999998765 355677995 778874
Q ss_pred ---ecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHH
Q 040169 248 ---LDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNA 319 (459)
Q Consensus 248 ---~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~ 319 (459)
+++.|+||..|.+|+ +|+|++||+|. .+|.+.||+.+
T Consensus 349 kK~gdeyf~f~~~Ck~pk-----------------------------------aCtillrg~skdil~e~ernlqda~~v 393 (527)
T KOG0364|consen 349 KKIGDEYFTFFTDCKEPK-----------------------------------ACTILLRGPSKDILNEVERNLQDAMGV 393 (527)
T ss_pred eccCchhhhhhhhcCCCc-----------------------------------ceEEEeccCchhHHHHHHHHhhhHHHH
Confidence 677899999999987 68899999886 89999999999
Q ss_pred HHHHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHH
Q 040169 320 VKAAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTI 397 (459)
Q Consensus 320 ~k~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~L 397 (459)
+|+.+-+. ++||||++| |..| +.|.+-+. ..|-+++.+.+.+.||+.+|++|
T Consensus 394 arn~ii~PklvPGGGAtE-----------------------MAvs---~~L~qksa~~~GVekwPY~Ava~AlEviPrtl 447 (527)
T KOG0364|consen 394 ARNVIINPKLVPGGGATE-----------------------MAVS---HELRQKSALMTGVEKWPYGAVAGALEVIPRTL 447 (527)
T ss_pred HHHhccCCcccCCccHHH-----------------------HHHH---HHHHHHHhhccchhccchhhhhcCceeccHHH
Confidence 99999986 999999999 9999 88977554 48899999999999999999999
Q ss_pred HHhcCCChHHHHHHHHhc---CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 398 ASATGVDGSAVAEKLLEQ---DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 398 a~NaG~d~~~vl~kl~~~---~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
++|+|.++...+..+++. +...+|+|.++|.++||.+.|+|+|..+|.+..++|++.|+++
T Consensus 448 iqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~L 511 (527)
T KOG0364|consen 448 IQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLL 511 (527)
T ss_pred HhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHH
Confidence 999999999999999865 4567899999999999999999999999999999999999875
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-51 Score=413.56 Aligned_cols=366 Identities=17% Similarity=0.221 Sum_probs=306.4
Q ss_pred cCCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 040169 5 RLSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKD 84 (459)
Q Consensus 5 ~~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~ 84 (459)
++|-|||+-+++|++.|| .|.++..+|.+||+..||||||+|+|.+||+++|..+|.+|+||..|..
T Consensus 54 klakdgnvLl~emQiqhP-------------Ta~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~ 120 (520)
T KOG0359|consen 54 KLAKDGNVLLKEMQIQHP-------------TASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITE 120 (520)
T ss_pred EEEecchhhHHHHhhcCc-------------hHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhh
Confidence 578899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh---------heeccCC--Cc----hhHHHHHHHHHHHhcc-Cc---cEEEE----cCCCccc
Q 040169 85 EIYMAFEAIKGHLKCRAR---------VGRTAAN--ED----KRIDVLLTEVMEKVGK-EG---LFIIY----DEEKKKN 141 (459)
Q Consensus 85 G~~~a~~~~l~~L~~~s~---------vA~~ss~--~d----~~la~li~~av~~vg~-~g---~I~i~----~g~~~~d 141 (459)
||+.|.++++++|+..+. +|.+|.+ -+ +.+..++++++..+.. ++ .+.++ ...+. .
T Consensus 121 gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~-~ 199 (520)
T KOG0359|consen 121 GFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSL-H 199 (520)
T ss_pred HHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCch-h
Confidence 999999999999997655 6665533 22 4456667777766652 22 12222 22333 4
Q ss_pred eeEEEEeEEEeccccccccccc-ccccc--------------------------------------------------CC
Q 040169 142 ELKFLRGMKLNWGAVSSFFIDD-ETQTC--------------------------------------------------KQ 170 (459)
Q Consensus 142 ~~~~v~G~~~~~g~~~~~~~~~-~~~~~--------------------------------------------------~~ 170 (459)
+..+++|+++|||..||.|++. ++..+ -+
T Consensus 200 dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc 279 (520)
T KOG0359|consen 200 DTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVC 279 (520)
T ss_pred hhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5779999999999999999986 65443 12
Q ss_pred CEEEE-eccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE---
Q 040169 171 PLFII-AEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV--- 246 (459)
Q Consensus 171 ~l~ii-~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~--- 246 (459)
.+++| +++||+..+..|+.+.+ +++|+ -++..||+|.++|||..+++.+ +|+|+.||+|+.|.
T Consensus 280 ~fvvinqkGidp~sld~~a~~gI------laLRR-----AKRRNmERL~lacGG~a~nsvd--dLtp~~LG~aglVye~t 346 (520)
T KOG0359|consen 280 EFVVINQKGIDPTSLDSLAKSGI------LALRR-----AKRRNMERLVLACGGEAVNSVD--DLTPDYLGYAGLVYEYT 346 (520)
T ss_pred eEEEecccCCCCCcchhhhhcch------HHHHH-----HhhhhHHHHHHhhccceecccc--cCChhhccccceeEEee
Confidence 24444 45777777666654432 34432 1245799999999999998876 57799999999995
Q ss_pred EecceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHH
Q 040169 247 ILDNEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVK 321 (459)
Q Consensus 247 i~~~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k 321 (459)
+++++|+|+++|.+|. .+||++.|++. .++.++|+|++++
T Consensus 347 lGEEkfTFIE~~~~p~-----------------------------------S~TiLikgpnkht~tQikdairdglrav~ 391 (520)
T KOG0359|consen 347 LGEEKFTFIEKCNNPS-----------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVK 391 (520)
T ss_pred ccceeeEeeecCCCCc-----------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHH
Confidence 6899999999999986 57899999987 9999999999999
Q ss_pred HHHhCC-cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHH
Q 040169 322 AAMEGG-IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIAS 399 (459)
Q Consensus 322 ~a~~~g-vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~ 399 (459)
++++++ ++||+|+.| .+++ .+|+.... .+|+.++|+++|++||..+|++|+.
T Consensus 392 ntl~d~~~i~Gaga~~-----------------------va~~---~~lr~~k~~vkgra~~g~~afa~all~ipk~La~ 445 (520)
T KOG0359|consen 392 NTLEDKCGIPGAGAFE-----------------------VALG---RHLRESKKSVKGRAYLGVKAFANALLVIPKTLAK 445 (520)
T ss_pred HHhhhcccccCchHHH-----------------------HHHH---HHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHH
Confidence 999998 999999999 9998 89987765 4999999999999999999999999
Q ss_pred hcCCChHHHHHHHHhcC-CCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 400 ATGVDGSAVAEKLLEQD-NPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 400 NaG~d~~~vl~kl~~~~-~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|+|+|+.+.+.+|.++. ...+|+|+.+|+..|-...||||.+.||++.|.+++-+|+++
T Consensus 446 nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nl 505 (520)
T KOG0359|consen 446 NSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNL 505 (520)
T ss_pred hcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHH
Confidence 99999999999998763 335799999999999999999999999999999999999875
No 41
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-48 Score=393.27 Aligned_cols=366 Identities=14% Similarity=0.164 Sum_probs=307.7
Q ss_pred CCCcHHHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 040169 6 LSWSRNYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDE 85 (459)
Q Consensus 6 ~t~d~~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~G 85 (459)
+|||.+||+|++++.|| +||||+++++.|+++.||||+.+|+|++|||++|.++|..|++|..|++|
T Consensus 64 ~TndaatIlrelev~HP-------------aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~g 130 (537)
T KOG0362|consen 64 VTNDAATILRELEVEHP-------------AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEG 130 (537)
T ss_pred EcCChHHHHHHhhccCc-------------HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 69999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh-----------heec--cC---CCchhHHHHHHHHHHHhccCcc-------EEEEcCCCccce
Q 040169 86 IYMAFEAIKGHLKCRAR-----------VGRT--AA---NEDKRIDVLLTEVMEKVGKEGL-------FIIYDEEKKKNE 142 (459)
Q Consensus 86 ~~~a~~~~l~~L~~~s~-----------vA~~--ss---~~d~~la~li~~av~~vg~~g~-------I~i~~g~~~~d~ 142 (459)
|++|.+++++.|+++.. ++++ ++ .+++++++++++|+.++.+.+. +....|+++++
T Consensus 131 y~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~- 209 (537)
T KOG0362|consen 131 YETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLED- 209 (537)
T ss_pred HHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCccc-
Confidence 99999999999999865 2222 22 2478999999999999877632 33347888874
Q ss_pred eEEEEeEEEeccc---------------cccccccc-c-cccc-----------------------------CCCEEEEe
Q 040169 143 LKFLRGMKLNWGA---------------VSSFFIDD-E-TQTC-----------------------------KQPLFIIA 176 (459)
Q Consensus 143 ~~~v~G~~~~~g~---------------~~~~~~~~-~-~~~~-----------------------------~~~l~ii~ 176 (459)
+.++.||+|++.. .+|.=+.. + +.++ +..+++..
T Consensus 210 S~Vv~GmVfkr~~eG~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~ 289 (537)
T KOG0362|consen 210 SCVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSG 289 (537)
T ss_pred ceeeEEEEeccccCCcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEec
Confidence 6799999999753 23322222 1 1111 66778888
Q ss_pred ccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEE---EEecceEE
Q 040169 177 EDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEV---VILDNEMV 253 (459)
Q Consensus 177 ~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v---~i~~~~~~ 253 (459)
..+++.+|. ++|+ ++|++++.++ |-+|.++++..||++.++.. .+.++.+|+|+.| |++++.++
T Consensus 290 g~V~em~Lh--flnk----y~ImVlqi~S-----k~eLrrlcrtvGA~~l~rl~--~P~~~~lG~~d~V~~~EiG~~~v~ 356 (537)
T KOG0362|consen 290 GKVDEMTLH--FLNK----YKIMVLQINS-----KFDLRRLCRTVGATALPRLF--PPAPEELGYCDSVSTQEIGDTLVV 356 (537)
T ss_pred Cccchhhhh--hhcc----ccEEEEEecc-----HhhHHHHHHHcCCccchhcc--CCCCccccccceeeeeecCCceEE
Confidence 899999985 6666 7889998876 33578899999999998865 3457789999988 46788877
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC-
Q 040169 254 ILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG- 327 (459)
Q Consensus 254 ~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g- 327 (459)
+|..... .+.++||++||+|+ .||.+.|++++.+.-.+++
T Consensus 357 vF~~e~~----------------------------------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~r 402 (537)
T KOG0362|consen 357 VFRWEST----------------------------------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSR 402 (537)
T ss_pred EEeeccC----------------------------------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCc
Confidence 7654211 13478999999998 8999999999999999986
Q ss_pred cccCCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChH
Q 040169 328 IIPENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGS 406 (459)
Q Consensus 328 vVpGGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~ 406 (459)
++||+|++| ++++ ..|.+|.. .+|..|+++..|++||+.+|++||+|||++..
T Consensus 403 LlpGagatE-----------------------ieLa---k~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~ 456 (537)
T KOG0362|consen 403 LLPGAGATE-----------------------IELA---KQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVT 456 (537)
T ss_pred cccCCchhH-----------------------HHHH---HHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHH
Confidence 999999999 9999 99999975 59999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCCCeeEecCCC-ccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 407 AVAEKLLEQ--DNPDVGYDPARG-EYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 407 ~vl~kl~~~--~~~~~Gid~~~g-~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
|++.+|... +..+.|+|+... ...|+.++||||-+.+|.++++.|+++|.++
T Consensus 457 evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tv 511 (537)
T KOG0362|consen 457 EVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTV 511 (537)
T ss_pred HHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhhee
Confidence 999999865 245688888766 5899999999999999999999999999875
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=366.57 Aligned_cols=308 Identities=14% Similarity=0.169 Sum_probs=265.6
Q ss_pred CCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 040169 22 SPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDLKDEIYMAFEAIKGHLKCRA 101 (459)
Q Consensus 22 p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I~~G~~~a~~~~l~~L~~~s 101 (459)
+..|||||. +..++++...+.+||.++|||||.+++|++++++++.+++..|+||..|.+||+.|...+.++|.+++
T Consensus 63 ditvtndgd---~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~ 139 (400)
T KOG0357|consen 63 DITVTNDGV---HQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEIS 139 (400)
T ss_pred Cceeeeccc---hHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhc
Confidence 346888884 24599999999999999999999999999999999999999999999999999999999999998865
Q ss_pred hheeccCCCchhHHHHHHHHHHHhccCccEEEEcCCCccceeEEEEeEEEeccccccccccccccccCCCEEEEeccchh
Q 040169 102 RVGRTAANEDKRIDVLLTEVMEKVGKEGLFIIYDEEKKKNELKFLRGMKLNWGAVSSFFIDDETQTCKQPLFIIAEDVEV 181 (459)
Q Consensus 102 ~vA~~ss~~d~~la~li~~av~~vg~~g~I~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~l~ii~~~i~~ 181 (459)
. -.. |.+++.+. + ..+..|.||+++||+
T Consensus 140 ~---~~e-----f~emi~~v-K-------------------------------------------~~ga~l~icqwgfdd 167 (400)
T KOG0357|consen 140 D---PFE-----FEEMIQQI-K-------------------------------------------ETGANLAICQWGFDD 167 (400)
T ss_pred c---ccc-----HHHHHHHH-H-------------------------------------------hhCCcEEEEecccCc
Confidence 2 111 33332221 0 014567899999999
Q ss_pred hHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEE-E----ecceEEEEc
Q 040169 182 EVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVV-I----LDNEMVILG 256 (459)
Q Consensus 182 ~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~-i----~~~~~~~i~ 256 (459)
||.+.|..|.+. +||+.+-. .+|-||++|||+++.++. +|++++||+|+.|. + .+|++.+++
T Consensus 168 eanhll~~n~lp------avrwVGGp-----EiEliAiaT~grIVprF~--eL~~~kLG~aglVrE~sfgttkdkmlviE 234 (400)
T KOG0357|consen 168 EANHLLLQNNLP------AVRWVGGP-----EIELIAIATGGRIVPRFS--ELTAEKLGFAGLVREISFGTTKDKMLVIE 234 (400)
T ss_pred hhhhHHhhcCCC------ceeecCCc-----ceEEEEeecCCeeeccHh--hhCHhhccccceEEEEecccccceEEEEE
Confidence 999988888764 67776633 378899999999999987 46789999999885 2 488999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC-ccc
Q 040169 257 GSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG-IIP 330 (459)
Q Consensus 257 ~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g-vVp 330 (459)
.|++.+ +.||.+||++. .+|++|||||++|+.+++. +|.
T Consensus 235 qc~nsk-----------------------------------aVTifvRg~Nkmii~EakrslhdalCvirnlird~rivY 279 (400)
T KOG0357|consen 235 QCKNSK-----------------------------------AVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY 279 (400)
T ss_pred ecCCCc-----------------------------------eEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEe
Confidence 998865 56788888886 9999999999999999986 999
Q ss_pred CCCcccccCcccchhHHHHHHHHHHhhhhccccccchhhHHhhc-CCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHHH
Q 040169 331 ENSSQVCWQPFASFDLFVYFLSLAVIRVLMYPRARYYDLDKLQT-TSLGGKIGVQLLQQALKMPVCTIASATGVDGSAVA 409 (459)
Q Consensus 331 GGG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~~~~~-~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~vl 409 (459)
|||++| +.|| ..+.+-+. .+|-+||++++|++||+.||..||+|+|++|.+.+
T Consensus 280 gGGaaE-----------------------iscs---lav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~l 333 (400)
T KOG0357|consen 280 GGGAAE-----------------------ISCA---LAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETL 333 (400)
T ss_pred cCchHH-----------------------hhhh---hHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhh
Confidence 999999 9999 88877665 48999999999999999999999999999999999
Q ss_pred HHHHhc----CCCCeeEecCCCccccccccCcccchHHHHHHHHHHHHHHhhc
Q 040169 410 EKLLEQ----DNPDVGYDPARGEYVDVIKLGIFDPMKLVIKELDDAIRLLVQT 458 (459)
Q Consensus 410 ~kl~~~----~~~~~Gid~~~g~~~d~~~~gI~DP~~vk~~al~~A~~~a~~~ 458 (459)
+++++. .++++|+|+.-..-.||.+.+|+||+..|++.+..|+.++.++
T Consensus 334 s~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMi 386 (400)
T KOG0357|consen 334 SDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMI 386 (400)
T ss_pred hHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHh
Confidence 999875 5889999998888899999999999999999999999998875
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.84 E-value=5.5e-20 Score=175.34 Aligned_cols=168 Identities=21% Similarity=0.277 Sum_probs=136.1
Q ss_pred CchhHHHHHHHHHHHhcc------CccEEEE--cCCCccceeEEEEeEEEeccccccccccc-ccccc---CCCE--EEE
Q 040169 110 EDKRIDVLLTEVMEKVGK------EGLFIIY--DEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC---KQPL--FII 175 (459)
Q Consensus 110 ~d~~la~li~~av~~vg~------~g~I~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~---~~~l--~ii 175 (459)
+++.+++++++|+..++. .+.|.++ +|++.. ++++++|+.|+++|.+|+|+.. ++.++ +.|| +|+
T Consensus 19 ~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~le~vii 97 (209)
T cd03333 19 WDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEYVVI 97 (209)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCeeEEEE
Confidence 789999999999999987 3456555 677774 6789999999999999999877 77766 6666 556
Q ss_pred ec-cchhhHHHHHHHhhhcccccEEEecCCCccccccchHHHHHHHhCCeEeeeccccccccccceeeeEEEEe---cce
Q 040169 176 AE-DVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQDLAVLTGGWVVTAESNSLLARLKLGSCKEVVIL---DNE 251 (459)
Q Consensus 176 ~~-~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~ledla~~tG~~v~~~~~~~~l~~~~LG~a~~v~i~---~~~ 251 (459)
++ +|++.+++.|..+ +|++|+. .++.+|+|||++|||+++++.. .+++++||+|+.|++. ++.
T Consensus 98 ~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~l~~ia~~tga~ii~~~~--~~~~~~lG~~~~v~~~~~~~~~ 164 (209)
T cd03333 98 AEKGIDDLALHYLAKA------GIMAVRR-----VKKEDLERIARATGATIVSSLE--DLTPEDLGTAELVEETKIGEEK 164 (209)
T ss_pred ecCcccHHHHHHHHHC------CCEEEEe-----CCHHHHHHHHHHHCCEEecccc--cCChhhceeeeEEEEEEECCeE
Confidence 55 5999999877763 4577765 3566899999999999998755 3457889999999864 445
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhC
Q 040169 252 MVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLEERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEG 326 (459)
Q Consensus 252 ~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~ 326 (459)
++++.+|.. ++.+||++||+|+ .+|+++||++++++++++
T Consensus 165 ~~~~~~~~~-----------------------------------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 165 LTFIEGCKG-----------------------------------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred EEEEEcCCC-----------------------------------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 888887644 2478999999998 999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.74 E-value=3.5e-17 Score=161.72 Aligned_cols=170 Identities=12% Similarity=0.170 Sum_probs=134.9
Q ss_pred CchhHHHHHHHHHHHhccC----------ccEEEE--cCCCccceeEEEEeEEEeccccccccccc-ccccc--------
Q 040169 110 EDKRIDVLLTEVMEKVGKE----------GLFIIY--DEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-------- 168 (459)
Q Consensus 110 ~d~~la~li~~av~~vg~~----------g~I~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-------- 168 (459)
+.+.|++++++|+..+..+ ..|.+. +|+++. ++++++|+++++.+.++.|++. ++.++
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le 97 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLE 97 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeec
Confidence 4788999999999987422 124444 788885 7899999999999999888776 66554
Q ss_pred --------------------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHH
Q 040169 169 --------------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQD 216 (459)
Q Consensus 169 --------------------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~led 216 (459)
+..++++.++|++.+++.|..++ |.+++.+ .+.+|++
T Consensus 98 ~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~g------I~~v~~v-----~~~dl~r 166 (261)
T cd03334 98 YQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAG------ITLVLNV-----KPSVLER 166 (261)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCC------CEEEEec-----CHHHHHH
Confidence 77889999999999998777643 4677654 4568999
Q ss_pred HHHHhCCeEeeeccccccccccceeeeEEEE---ec-----ceEEEEcCCCChhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040169 217 LAVLTGGWVVTAESNSLLARLKLGSCKEVVI---LD-----NEMVILGGSGSQADIEKRCEQLRSAIKASTSDYEIKLLE 288 (459)
Q Consensus 217 la~~tG~~v~~~~~~~~l~~~~LG~a~~v~i---~~-----~~~~~i~~~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~ 288 (459)
||++|||+++++... .++++.||+|+.|++ ++ ++++++++|+.++
T Consensus 167 Ia~~tGa~ii~~i~~-~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~-------------------------- 219 (261)
T cd03334 167 ISRCTGADIISSMDD-LLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKEL-------------------------- 219 (261)
T ss_pred HHHHhCCEEecChhh-hcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCc--------------------------
Confidence 999999999998321 356788999999975 33 5799999886533
Q ss_pred HHHHhhcCCeEEEEecCCcc-----chhhhhHHHHHHHHHHhCC
Q 040169 289 ERLLNLSCGALIVKVTGGST-----KNKRIVNALNAVKAAMEGG 327 (459)
Q Consensus 289 eRl~~lsg~~~~I~vgg~t~-----~~r~i~DAl~~~k~a~~~g 327 (459)
.+||++||+|+ .+|.++||+++++++..++
T Consensus 220 ---------~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 220 ---------GCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred ---------eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 68899999997 9999999999999987664
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=97.14 E-value=0.0018 Score=75.67 Aligned_cols=125 Identities=12% Similarity=0.132 Sum_probs=84.5
Q ss_pred CchhHHHHHHHHHHHhccC----------ccEEEE--cCCCccceeEEEEeEEEeccccccccccc-ccccc--------
Q 040169 110 EDKRIDVLLTEVMEKVGKE----------GLFIIY--DEEKKKNELKFLRGMKLNWGAVSSFFIDD-ETQTC-------- 168 (459)
Q Consensus 110 ~d~~la~li~~av~~vg~~----------g~I~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-~~~~~-------- 168 (459)
+.+.+..++.+|...+.++ +.+.++ .+|+ ..+++++.|+++.+-..+-.|.++ ++.++
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~-~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~le 411 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGS-RVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLE 411 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCC-cccceeeeEEEeecchhhhhhhhhccCCceEEEecchh
Confidence 3567788888888877543 235555 6666 467999999999998887777776 55443
Q ss_pred --------------------------------CCCEEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchHHH
Q 040169 169 --------------------------------KQPLFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIMQD 216 (459)
Q Consensus 169 --------------------------------~~~l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~led 216 (459)
+..++++.+.|...|...|-. .++.-++ +.+...|++
T Consensus 412 yqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~---k~I~lvl--------nvK~s~leR 480 (1598)
T KOG0230|consen 412 YQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD---KGISLVL--------NVKRSLLER 480 (1598)
T ss_pred hhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc---cCeEEEE--------eccHHHHHH
Confidence 233455555666666554432 1111111 334457999
Q ss_pred HHHHhCCeEeeeccccccccccceeeeEEEEe
Q 040169 217 LAVLTGGWVVTAESNSLLARLKLGSCKEVVIL 248 (459)
Q Consensus 217 la~~tG~~v~~~~~~~~l~~~~LG~a~~v~i~ 248 (459)
|++.||+.|+.+.+. +....||+|+.+++.
T Consensus 481 IsR~tga~I~~siDs--lt~~klg~C~~F~v~ 510 (1598)
T KOG0230|consen 481 ISRCTGADIVPSVDS--LTSQKLGYCELFRVE 510 (1598)
T ss_pred HHHHhcCceecchhh--hhccccCCCccHhhh
Confidence 999999999987764 567789999998754
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=91.05 E-value=0.28 Score=53.62 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=59.3
Q ss_pred CCC-EEEEeccchhhHHHHHHHhhhcccccEEEecCCCccccccchH-HHHHHHhCCeEeeecccccccccccee--eeE
Q 040169 169 KQP-LFIIAEDVEVEVAGSLILDRICVSTKFCLVKPPEFEENCKGIM-QDLAVLTGGWVVTAESNSLLARLKLGS--CKE 244 (459)
Q Consensus 169 ~~~-l~ii~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~r~~~l-edla~~tG~~v~~~~~~~~l~~~~LG~--a~~ 244 (459)
+.+ +++++++|++.+.+.|..+ .|++++.+ .++++ ++|+.+|||+.++...+ +++..+|. |+.
T Consensus 270 g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v-----~~~dl~~~l~~~~ga~~v~~~~d--~t~~~~G~~~~~~ 336 (524)
T COG0459 270 GANVVVVKAPGIDDLAKAYLEDI------AILTGRRV-----KKEDLGERLAKLGGAKIVSVLKD--LTTIVLGEGAAGL 336 (524)
T ss_pred CCCEEEEECCCCcHHHHHHHHhh------cceeccee-----cchhhHHHHHHccCceEEeeccc--CceeecCccccce
Confidence 677 7888999999999877754 34566544 34567 79999999999987653 45788999 999
Q ss_pred EEE---ecceEEEEcCCCC
Q 040169 245 VVI---LDNEMVILGGSGS 260 (459)
Q Consensus 245 v~i---~~~~~~~i~~~~~ 260 (459)
|+. ++++++++.++..
T Consensus 337 ve~~~~~~~~~~~~~~~~~ 355 (524)
T COG0459 337 VEETKTGDYDMEKLQERKA 355 (524)
T ss_pred EEEeeccchhhhhhhhhhh
Confidence 874 4666777776653
No 47
>CHL00093 groEL chaperonin GroEL
Probab=46.04 E-value=9.1 Score=41.94 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=30.3
Q ss_pred CCccCCCcHHHHHhhcccCCCCCcCCccc-c-----cchHHHHHHHHHhch
Q 040169 2 VPSRLSWSRNYAAKDIELKKSPKVKDCSV-I-----EESFLTGFMQQVKNP 46 (459)
Q Consensus 2 ~~~~~t~d~~ti~~~i~~~~p~~~~~~~~-i-----~en~~akll~~~a~~ 46 (459)
|-++|.|-|-..+= .+-...|+|||||+ | ++||+|++..++...
T Consensus 26 v~tTlGP~G~~kmi-~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~ 75 (529)
T CHL00093 26 VSVTLGPKGRNVVL-EKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQ 75 (529)
T ss_pred HhcccCCCCCcEEE-ECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHH
Confidence 34667777765541 11123478999999 7 999999998876554
No 48
>PF09644 Mg296: Mg296 protein; InterPro: IPR019097 This protein of 129 residues is expressed in bacteria. It consists of three identical chains of five alpha helices. Two copies of each chain associate into a complex of six units of possible biological significance but of unknown function. ; PDB: 2I15_A.
Probab=27.19 E-value=1.5e+02 Score=25.62 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=34.0
Q ss_pred cchhHHH----HHHHHHHhhhhccccccchhhHHhhcCCchhHHHHHHHHHHHhhHHHHHHHhcCCChHHH
Q 040169 342 ASFDLFV----YFLSLAVIRVLMYPRARYYDLDKLQTTSLGGKIGVQLLQQALKMPVCTIASATGVDGSAV 408 (459)
Q Consensus 342 ~~~~~~~----~~~~~~~~~~~~~~s~~~~~L~~~~~~~~~e~~gi~~~a~AL~~ip~~La~NaG~d~~~v 408 (459)
.||-|=| .|+++.|++|+=+++ ..++. ..+..+-+.+-|=+||-.....||-.-|.|+...
T Consensus 50 ~FF~Kpm~sd~~fi~~evikqlD~la---~lv~n---~~dddk~~~q~FYeal~~fisAlAiTK~i~~~R~ 114 (121)
T PF09644_consen 50 DFFEKPMLSDLFFIKNEVIKQLDHLA---DLVKN---PKDDDKKCCQQFYEALIVFISALAITKGISIKRL 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHSHHHHHHHHHHTT--TTHH
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHH---HHHcC---CcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3555554 499999999986665 44432 2455556669999999999999999999987654
No 49
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=23.19 E-value=1.7e+02 Score=23.73 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 040169 61 MHQAMCIEGRKVLEAG-VDAMDLKDEIYMA 89 (459)
Q Consensus 61 La~~Ll~~~~~li~~G-i~P~~I~~G~~~a 89 (459)
+...++.++.+++++| .+|.+|=++++..
T Consensus 7 l~~~~~~ea~~l~~egvas~~~ID~~~~~~ 36 (97)
T PF00725_consen 7 LLAALLNEAARLVEEGVASPEDIDRAMRYG 36 (97)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3467889999999999 8998887766663
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=29 Score=35.88 Aligned_cols=65 Identities=9% Similarity=-0.190 Sum_probs=51.1
Q ss_pred cCCCcH-HHHHhhcccCCCCCcCCcccccchHHHHHHHHHhchhccccCCCcChHHHHHHHHHHHHHHHHHcCCCHHHH
Q 040169 5 RLSWSR-NYAAKDIELKKSPKVKDCSVIEESFLTGFMQQVKNPTCEPDEYGIKYLPVMHQAMCIEGRKVLEAGVDAMDL 82 (459)
Q Consensus 5 ~~t~d~-~ti~~~i~~~~p~~~~~~~~i~en~~akll~~~a~~qd~evGDGTTtvvvLa~~Ll~~~~~li~~Gi~P~~I 82 (459)
+.|||| .+|+|.|.+.|. .++..+...++++.+.+|+++-.+.........-.+..+..-++..+
T Consensus 65 tvtndgd~~IakLmv~LS~-------------sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~ 130 (400)
T KOG0357|consen 65 TVTNDGVHQIAKLIVILSK-------------SQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVV 130 (400)
T ss_pred eeeeccchHHHHHHHHhcc-------------cchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHh
Confidence 467766 699999988888 69999999999999999999999888877766666644444444433
No 51
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=22.85 E-value=1.3e+02 Score=28.71 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=18.8
Q ss_pred EEecCCccchhhhhHHHHHHHHHHhC--C---cccCCCccc
Q 040169 301 VKVTGGSTKNKRIVNALNAVKAAMEG--G---IIPENSSQV 336 (459)
Q Consensus 301 I~vgg~t~~~r~i~DAl~~~k~a~~~--g---vVpGGG~~e 336 (459)
++.||+. .-+...+++.|+++ + +|||||..-
T Consensus 4 Vk~~Gs~-----~~~~~~~~~~ale~~~~~i~iVpGGg~FA 39 (212)
T COG2054 4 VKKGGSG-----VAERAAAVKEALENLQRSILIVPGGGIFA 39 (212)
T ss_pred EEecCCC-----hHHHHHHHHHHHHhhcceEEEecCchHHH
Confidence 4555542 33455566666654 2 799999854
No 52
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=22.74 E-value=94 Score=27.88 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhe-------eccCCCchhHHHHHHHH
Q 040169 72 VLEAGVDAMDLKDEIYMAFEAIKGHLKCRARVG-------RTAANEDKRIDVLLTEV 121 (459)
Q Consensus 72 li~~Gi~P~~I~~G~~~a~~~~l~~L~~~s~vA-------~~ss~~d~~la~li~~a 121 (459)
.-..|++|...+.++.-..+++++.|+.+-+|- +++.++...+-+++.+.
T Consensus 82 ~krrGvrPsh~~~as~~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i 138 (143)
T KOG3411|consen 82 SKRRGVRPSHFCDASGGIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQI 138 (143)
T ss_pred cccCCCCChhhhccccHHHHHHHHHHHhCCceeeCCCCcceeCcccchhHHHHHHHH
Confidence 356899999999999999999999999987622 46666666666665544
No 53
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.46 E-value=2.2e+02 Score=27.34 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEEecCCcc-------chhhhhHHHHHHHHHHh
Q 040169 280 SDYEIKLLEERLLNLSCGALIVKVTGGST-------KNKRIVNALNAVKAAME 325 (459)
Q Consensus 280 ~~~~~~~l~eRl~~lsg~~~~I~vgg~t~-------~~r~i~DAl~~~k~a~~ 325 (459)
++++++++-||+.|.. ..+.+.++|-|. -++++.+|+..++.+++
T Consensus 11 ~D~E~e~flE~lqr~~-~~~~v~~~g~n~vkV~v~G~~~eireair~irel~~ 62 (204)
T COG3286 11 DDVEKEEFLERLQRMV-KDTYVEIRGKNRVKVNVFGTKDEIREAIRAIRELHR 62 (204)
T ss_pred CcHHHHHHHHHHHHhC-cceEEEEccCceEEEEEecchHHHHHHHHHHHHHHH
Confidence 4566677888888874 456777787554 68889999999998875
No 54
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=20.84 E-value=41 Score=37.06 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=27.1
Q ss_pred CCccCCCcHHHHHhhcccCCCCCcCCccc-c-----cchHHHHHHHHHh
Q 040169 2 VPSRLSWSRNYAAKDIELKKSPKVKDCSV-I-----EESFLTGFMQQVK 44 (459)
Q Consensus 2 ~~~~~t~d~~ti~~~i~~~~p~~~~~~~~-i-----~en~~akll~~~a 44 (459)
|-++|.|-|-..+=.=.. ..|+|||||+ | ++||++++..++.
T Consensus 27 v~tTLGP~G~~kmi~~~~-G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll 74 (544)
T PRK12850 27 VKVTLGPKGRNVVLEKSF-GAPRITKDGVTVAKEIELEDKFENMGAQMV 74 (544)
T ss_pred HhCCcCCCCCCEEEECCC-CCeeEeccHHHHHHHhcCCChhhhHHHHHH
Confidence 346677777544311111 3479999999 7 8899988866553
No 55
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=20.03 E-value=1.6e+02 Score=27.11 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCChHHH
Q 040169 381 IGVQLLQQALKMPVCTIASATGVDGSAV 408 (459)
Q Consensus 381 ~gi~~~a~AL~~ip~~La~NaG~d~~~v 408 (459)
.-++++.+.|+..|-+|.+.+|+.|..+
T Consensus 101 ~~~Kav~q~LetlPD~LERd~gL~p~~v 128 (152)
T PF07278_consen 101 EMAKAVVQVLETLPDILERDAGLPPEQV 128 (152)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCCHHHH
Confidence 4578899999999999999999999754
Done!