BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040171
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 171/299 (57%), Gaps = 13/299 (4%)
Query: 26 FYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPE 85
FY++SCP AES++ V F + I L+RMHFHDCF CDAS+L+DST + E
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRG-CDASVLLDSTANNTAE 64
Query: 86 KDS-GSNLTVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRL 144
KD+ +N ++RG+E+I K+AVE CP TVSCADI+A A RD+ LAG + Y +P+GR
Sbjct: 65 KDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRR 124
Query: 145 DGLRSNADEVN--LPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRL- 201
DG S A E N +P + ++ FA K E V + GAH++GV HCS F +RL
Sbjct: 125 DGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLY 184
Query: 202 -------ADSDMDPAFAQELSKACEASSGSDDPMT-NLDRGTPTSLDSQYYNQTLFKRGV 253
D + P++A L C A+S P+T +LD TP+ LD+ YY G+
Sbjct: 185 NFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGL 244
Query: 254 LQIDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCRAFN 312
L DQAL +A+ V A + + FA MVK+G ++VLT QGEIR NC N
Sbjct: 245 LTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 166/292 (56%), Gaps = 6/292 (2%)
Query: 25 NFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQP 84
NFY++ CP A S I + V + + +LLR+HFHDCF CDAS+L+D T
Sbjct: 5 NFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQG-CDASVLLDDTSNFTG 63
Query: 85 EKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGR 143
EK +G N ++RG+E+ID IK+ VE CP VSCADI+A+A RD+V GG ++++ GR
Sbjct: 64 EKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGR 123
Query: 144 LDGLRSNADEVN--LPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRL 201
D ++ N LP ++ ++ F+ KGF T E V + GAHT+G C+ F+ R+
Sbjct: 124 RDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRI 183
Query: 202 A-DSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQIDQAL 260
+S++DP +A+ L C S G D ++ D TP D+ YY K+G+L DQ L
Sbjct: 184 YNESNIDPTYAKSLQANCP-SVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQL 242
Query: 261 ALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCRAFN 312
ST V ++N+ F F N M+K+G+L LT G+IR NCR N
Sbjct: 243 FNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 171/300 (57%), Gaps = 15/300 (5%)
Query: 26 FYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPE 85
FYS +CP A +I+ + +Q+ +D I +L+R+HFHDCF N CDASIL+D T Q E
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFV-NGCDASILLDDTGSIQSE 65
Query: 86 KDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRL 144
K++G N+ + RG+ ++D IK A+E CP VSC+D++ALA+ +V+LAGG ++++ GR
Sbjct: 66 KNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRR 125
Query: 145 DGLRSNADEVN--LPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRL- 201
D L +N N +P S+ N+ F+ G NT + V + GAHT G C F +RL
Sbjct: 126 DSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLF 185
Query: 202 -------ADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVL 254
D ++ L + C +GS +TNLD TP + D+ Y+ G+L
Sbjct: 186 NFSGTGNPDPTLNSTLLSTLQQLCP-QNGSASTITNLDLSTPDAFDNNYFANLQSNDGLL 244
Query: 255 QIDQAL--ALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCRAFN 312
Q DQ L +ST IV FA+++ F +FA M+ +G++ LT GEIR +C+ N
Sbjct: 245 QSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVN 304
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 167/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 62
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLPG ++P + F G N + +V L G HT G C F
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRAFN 312
CR N
Sbjct: 302 CRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 167/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 62
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + ++D TPT D++YY +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRAFN 312
CR N
Sbjct: 302 CRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 167/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 61
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFN-TTETVVILGAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N +++ V + G HT G C F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRAFN 312
CR N
Sbjct: 301 CRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 61
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRAFN 312
CR N
Sbjct: 301 CRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 62
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRAFN 312
CR N
Sbjct: 302 CRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 61
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRAFN 312
CR N
Sbjct: 301 CRVVN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 61
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRAFN 312
CR N
Sbjct: 301 CRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 62
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRAFN 312
CR N
Sbjct: 302 CRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 61
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G H+ G C F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRAFN 312
CR N
Sbjct: 301 CRVVN 305
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 169/297 (56%), Gaps = 12/297 (4%)
Query: 25 NFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQP 84
+FY +CP AESI+ VQ D + LLR+HFHDCF CDAS+L+D +
Sbjct: 12 DFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQG-CDASVLLDGSATGPG 70
Query: 85 EKDSGSNLTVR--GYEIIDEIKNAVEQKC-PSTVSCADIIALATRDAVALAGGLNYSLPT 141
E+ + NLT+R ++ +++I++ +E++C + VSC+DI+ALA RD+V ++GG +Y +P
Sbjct: 71 EQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPL 130
Query: 142 GRLDG--LRSNADEV-NLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQ 198
GR D S D + +LPG S +V ++L + G + T+ V I G HT+G+ HCS F+
Sbjct: 131 GRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFE 190
Query: 199 DRL---ADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQ 255
DRL D + P F L + C A D T LD TP D++YY + + G+
Sbjct: 191 DRLFPRPDPTISPTFLSRLKRTCPAKG--TDRRTVLDVRTPNVFDNKYYIDLVNREGLFV 248
Query: 256 IDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCRAFN 312
DQ L +A T IV FA + DF F + K+G ++V T QGE+R+NC N
Sbjct: 249 SDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSVRN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 165/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HF DCF N CDASIL+D+T
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFV-NGCDASILLDNTTSF 62
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRAFN 312
CR N
Sbjct: 302 CRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 165/305 (54%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++LR+HFHDCF N CDASIL+D+T
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFV-NGCDASILLDNTTSF 62
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 308 CRAFN 312
CR N
Sbjct: 302 CRVVN 306
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 170/303 (56%), Gaps = 21/303 (6%)
Query: 26 FYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPE 85
FY+ +CP A +++ +VQ+ F +D I +L+R+HFHDCF CDASIL+D++ E
Sbjct: 8 FYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLG-CDASILLDNSGSIISE 66
Query: 86 KDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRL 144
K++G N + RG+ ++D IK A+E CP VSC D++ALA++ +V+L+GG ++++ GR
Sbjct: 67 KNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRR 126
Query: 145 DGLRSNADEVN--LPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRL- 201
D L +N N +P + + N+ F+ G NT + V + GAHT G C F +RL
Sbjct: 127 DTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLF 186
Query: 202 ---ADSDMDP-------AFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKR 251
+ DP + QEL SGS TNLD TP + D+ Y+
Sbjct: 187 NFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGS----TNLDLSTPDAFDNNYFTNLQSNN 242
Query: 252 GVLQIDQAL--ALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCR 309
G+LQ DQ L ++T IV FA+++ F +FA M+ +G++ LT GEIR +C+
Sbjct: 243 GLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCK 302
Query: 310 AFN 312
N
Sbjct: 303 KTN 305
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 164/305 (53%), Gaps = 17/305 (5%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +SCP +I+ + + +D I ++L +HF DCF N CDASIL+D+T
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFV-NGCDASILLDNTTSF 61
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ EKD+ N + RG+ +ID +K AVE CP TVSCAD++ +A + +V LAGG ++ +P
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRLDGLRSNAD--EVNLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQ 198
GR D L++ D NLP ++P + F G N + +V L G HT G C F
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 199 DR--------LADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK 250
DR L D ++ + Q L C +G+ + + D TPT D++YY +
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 251 RGVLQIDQALALDASTHD---IVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+G++Q DQ L + D +V FAN F +F M ++G++ LT QG+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 308 CRAFN 312
CR N
Sbjct: 301 CRVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 169/303 (55%), Gaps = 15/303 (4%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
TP FY +CP I+F V+ TD I +L+R+HFHDCF CD S+L+++T
Sbjct: 3 TPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQG-CDGSVLLNNTDTI 61
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
+ E+D+ N+ ++RG +++++IK AVE CP TVSCADI+A+A A L GG + +P
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 142 GRLDGLRSNADEV--NLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQD 199
GR D L +N NLP ++ + FA +G NT + V + G HT G CS F +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 200 RL--------ADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKR 251
RL D ++ + + L C ++ D+ +TNLD TP D++YY+ L
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDN-LTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 252 GVLQIDQAL--ALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCR 309
G+LQ DQ L A T IV F+++++ F +F M+K+G++ VLT +GEIR C
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCN 300
Query: 310 AFN 312
N
Sbjct: 301 FVN 303
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 23/305 (7%)
Query: 23 TPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRS 82
+P+ Y+ SCP I+ V + + +L+R+HFHDCF N CDAS+L+D +
Sbjct: 3 SPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFV-NGCDASLLLDG---A 58
Query: 83 QPEKDSGSNL-TVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPT 141
EK + N+ + RG+E+ID IK AVE CP VSCADI+ LA RD+V L+GG + +
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 142 GRLDGLRSNADEV-NLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDR 200
GR DGL +N + NLP + ++ F N T+ V + GAHT G C+ F +R
Sbjct: 119 GRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNR 178
Query: 201 L--------ADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRG 252
L D+ ++ + L C G+ + LDR T + D+ Y+ L +G
Sbjct: 179 LFNFTGAGNPDATLETSLLSNLQTVCPL-GGNSNITAPLDRSTTDTFDNNYFKNLLEGKG 237
Query: 253 VLQIDQA-----LALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQN 307
+L DQ LA++ +T +V ++ + F F M+++G++ GE+R N
Sbjct: 238 LLSSDQILFSSDLAVN-TTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTN 294
Query: 308 CRAFN 312
CR N
Sbjct: 295 CRVIN 299
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 32/251 (12%)
Query: 55 ALLRMHFH-----DCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQ 109
+L+R+ +H DCF + S +++R +PE N +G +I + +++
Sbjct: 29 SLIRLAWHEAASYDCFKKDGSPNS----ASMRFKPECLYAGN---KGLDIPRKALETLKK 81
Query: 110 KCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSN--ADEVNLPGTSLSVPNVL 167
K P +S AD+ LA A+ GG GR+D + + LP S + +V
Sbjct: 82 KYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVR 140
Query: 168 QMFAEKGFNTTETVVILGAHTVGVVHCSF--FQDRLA--DSDMDPAFAQELSKACEASSG 223
++F GFN ETV ++GAHT G H F + + D +F +L +
Sbjct: 141 EVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNP 200
Query: 224 SDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVAHFANDEDDFQLS 283
+ M +DR T K +L D L LD S V +A D D F
Sbjct: 201 KVEQMQLMDRATT-------------KLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKD 247
Query: 284 FANVMVKLGSL 294
FAN KL L
Sbjct: 248 FANAFKKLTEL 258
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 32/251 (12%)
Query: 55 ALLRMHFH-----DCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQ 109
+L+R+ +H DCF + S +++R +PE N +G +I + +++
Sbjct: 28 SLIRLAWHEAASYDCFKKDGSPNS----ASMRFKPECLYAGN---KGLDIPRKALETLKK 80
Query: 110 KCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSN--ADEVNLPGTSLSVPNVL 167
K P +S AD+ LA A+ GG GR+D + + LP S + +V
Sbjct: 81 KYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVR 139
Query: 168 QMFAEKGFNTTETVVILGAHTVGVVHCSF--FQDRLA--DSDMDPAFAQELSKACEASSG 223
++F GFN ETV ++GAHT G H F + + D +F +L +
Sbjct: 140 EVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNP 199
Query: 224 SDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVAHFANDEDDFQLS 283
+ M +DR T K +L D L LD S V +A D D F
Sbjct: 200 KVEQMQLMDRATT-------------KLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKD 246
Query: 284 FANVMVKLGSL 294
FAN KL L
Sbjct: 247 FANAFKKLTEL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 32/251 (12%)
Query: 55 ALLRMHFH-----DCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQ 109
+L+R+ +H DCF + S +++R +PE N +G +I + +++
Sbjct: 29 SLIRLAWHEAASYDCFKKDGSPNS----ASMRFKPECLYAGN---KGLDIPRKALETLKK 81
Query: 110 KCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSN--ADEVNLPGTSLSVPNVL 167
K P +S AD+ LA A+ GG GR+D + + LP S + +V
Sbjct: 82 KYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVR 140
Query: 168 QMFAEKGFNTTETVVILGAHTVGVVHCSF--FQDRLA--DSDMDPAFAQELSKACEASSG 223
++F GFN ETV ++GAHT G H F + + D +F +L +
Sbjct: 141 EVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNP 200
Query: 224 SDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVAHFANDEDDFQLS 283
+ M +DR T K +L D L LD S V +A D D F
Sbjct: 201 KVEQMQLMDRATT-------------KLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKD 247
Query: 284 FANVMVKLGSL 294
FAN KL L
Sbjct: 248 FANAFKKLTEL 258
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 41/275 (14%)
Query: 27 YSSSCPEAESIIFNVVQ--RRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQP 84
Y + P+ + I + R F ++ +LR+ +H + + + TI+ Q
Sbjct: 4 YPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQA 63
Query: 85 EKDSGSNLTVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRL 144
E G+N G +I + ++++ P VS AD LA AV + GG GR
Sbjct: 64 ELAHGAN---NGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVPFHPGRE 119
Query: 145 DGLRSNADEVNLPGTSLSVPNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLAD 203
D E LP + ++ +F + G + + V + G HT+G H
Sbjct: 120 DKPEPPP-EGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAH---------- 168
Query: 204 SDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQA 259
+ SG + P T+ P D+ Y+ + L K G+LQ+ D+A
Sbjct: 169 ---------------KERSGFEGPWTS----NPLIFDNSYFTELLTGEKDGLLQLPSDKA 209
Query: 260 LALDASTHDIVAHFANDEDDFQLSFANVMVKLGSL 294
L D+ +V +A DED F +A +KL L
Sbjct: 210 LLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 98/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +PG SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPGPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 98/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +PG SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPGPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 98/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +PG SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPGPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADGVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 39/256 (15%)
Query: 44 RRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEI 103
R F ++ +LR+ +H + + + TI+ E +N G +I +
Sbjct: 35 RGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSAN---NGLDIAVRL 91
Query: 104 KNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSV 163
++ + P +S AD LA AV + GG GR D E LP +
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGS 149
Query: 164 PNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASS 222
++ +F + G + V + G HT+G H + +S
Sbjct: 150 DHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-------------------------KEAS 184
Query: 223 GSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDED 278
G + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V +A DED
Sbjct: 185 GFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 240
Query: 279 DFQLSFANVMVKLGSL 294
F +A KL L
Sbjct: 241 AFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 39/256 (15%)
Query: 44 RRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEI 103
R F ++ +LR+ +H + + + TI+ E +N G +I +
Sbjct: 35 RGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSAN---NGLDIAVRL 91
Query: 104 KNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSV 163
++ + P +S AD LA AV + GG GR D E LP +
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGS 149
Query: 164 PNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASS 222
++ +F + G + V + G HT+G H + S
Sbjct: 150 DHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-------------------------KERS 184
Query: 223 GSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDED 278
G + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V +A DED
Sbjct: 185 GFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 240
Query: 279 DFQLSFANVMVKLGSL 294
F +A KL L
Sbjct: 241 AFFADYAEAHQKLSEL 256
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 98/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
F N++ Q FA M K+ L
Sbjct: 244 WQSFVNNQPKIQNRFAATMSKMALL 268
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 39/256 (15%)
Query: 44 RRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEI 103
R F ++ +LR+ +H + + + TI+ E +N G +I +
Sbjct: 23 RGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSAN---NGLDIAVRL 79
Query: 104 KNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSV 163
++ + P +S AD LA AV + GG GR D E LP +
Sbjct: 80 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGS 137
Query: 164 PNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASS 222
++ +F + G + V + G HT+G H + S
Sbjct: 138 DHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-------------------------KERS 172
Query: 223 GSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDED 278
G + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V +A DED
Sbjct: 173 GFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 228
Query: 279 DFQLSFANVMVKLGSL 294
F +A KL L
Sbjct: 229 AFFADYAEAHQKLSEL 244
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 98/256 (38%), Gaps = 39/256 (15%)
Query: 44 RRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEI 103
R F ++ +LR+ +H + + + TI+ E +N G +I +
Sbjct: 35 RGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSAN---NGLDIAVRL 91
Query: 104 KNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSV 163
++ + P +S AD LA AV + GG GR D E LP +
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGS 149
Query: 164 PNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASS 222
++ +F + G + V + G HT+G H + S
Sbjct: 150 DHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-------------------------KERS 184
Query: 223 GSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDED 278
G + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V +A DED
Sbjct: 185 GFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 240
Query: 279 DFQLSFANVMVKLGSL 294
F +A KL L
Sbjct: 241 AFFADYAEAHQKLSEL 256
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 39/256 (15%)
Query: 44 RRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEI 103
R F ++ +L++ +H + + + TI+ E +N G +I +
Sbjct: 23 RGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSAN---NGLDIAVRL 79
Query: 104 KNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSV 163
++ + P +S AD LA AV + GG GR D E LP +
Sbjct: 80 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGS 137
Query: 164 PNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASS 222
++ +F + G + V + G HT+G H ++R S
Sbjct: 138 DHLRDVFGKAMGLTDQDIVALSGGHTIGAAH----KER---------------------S 172
Query: 223 GSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDED 278
G + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V +A DED
Sbjct: 173 GFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 228
Query: 279 DFQLSFANVMVKLGSL 294
F +A KL L
Sbjct: 229 AFFADYAEAHQKLSEL 244
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPQDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 98/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A + +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AAAKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 39/256 (15%)
Query: 44 RRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEI 103
R F ++ +LR+ H + + + TI+ E +N G +I +
Sbjct: 35 RGFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTIKHPAELAHSAN---NGLDIAVRL 91
Query: 104 KNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSV 163
++ + P +S AD LA AV + GG GR D E LP +
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGS 149
Query: 164 PNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASS 222
++ +F + G + V + G HT+G H + S
Sbjct: 150 DHLRDVFGKAMGLTDQDIVALSGGHTIGAAH-------------------------KERS 184
Query: 223 GSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDED 278
G + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V +A DED
Sbjct: 185 GFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADED 240
Query: 279 DFQLSFANVMVKLGSL 294
F +A KL L
Sbjct: 241 AFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 71/185 (38%), Gaps = 35/185 (18%)
Query: 115 VSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEK- 173
+S AD LA AV + GG GR D E LP + ++ +F +
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGSDHLRDVFGKAM 160
Query: 174 GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDR 233
G + V + G HT+G H + SG + P T+
Sbjct: 161 GLTDQDIVALSGGHTIGAAH-------------------------KERSGFEGPWTS--- 192
Query: 234 GTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMV 289
P D+ Y+ + L K G+LQ+ D+AL D +V +A DED F +A
Sbjct: 193 -NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQ 251
Query: 290 KLGSL 294
KL L
Sbjct: 252 KLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 36/204 (17%)
Query: 96 GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVN 155
G +I + ++ + P +S AD LA AV + GG GR D E
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGR 141
Query: 156 LPGTSLSVPNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQEL 214
LP + ++ +F + G + V + G HT+G H
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------------- 180
Query: 215 SKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIV 270
+ SG + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V
Sbjct: 181 ----KERSGFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLV 232
Query: 271 AHFANDEDDFQLSFANVMVKLGSL 294
+A DED F +A KL L
Sbjct: 233 DKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 36/204 (17%)
Query: 96 GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVN 155
G +I + ++ + P +S AD LA AV + GG GR D E
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGR 141
Query: 156 LPGTSLSVPNVLQMFAEK-GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQEL 214
LP + ++ +F + G + V + G HT+G H
Sbjct: 142 LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------------- 180
Query: 215 SKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIV 270
+ SG + P T+ P D+ Y+ + L K G+LQ+ D+AL D +V
Sbjct: 181 ----KERSGFEGPWTS----NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLV 232
Query: 271 AHFANDEDDFQLSFANVMVKLGSL 294
+A DED F +A KL L
Sbjct: 233 DKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 99/252 (39%), Gaps = 31/252 (12%)
Query: 56 LLRMHFHDC--FSGNVCDASIL--IDSTIRSQPEKDSGSNLT-VRGYEIIDEIKNAVEQK 110
++R+ +HD ++ N+ + + ++R E G+N V ++ IK+
Sbjct: 28 MVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGANAGLVNALNLLKPIKDKY--- 84
Query: 111 CPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSN--ADEVNLPGTSLSVP--NV 166
S V+ AD+ LA+ A+ AGG + GR+D +E LP P ++
Sbjct: 85 --SGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHL 142
Query: 167 LQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDD 226
+F G N E V + GAHT+G DR + + ++ A S +
Sbjct: 143 RDVFYRMGLNDKEIVALSGAHTLGRSR----PDRSGWGKPETKYTKDGPGAPGGQSWTAQ 198
Query: 227 PMTNLDRGTPTSLDSQYYNQTLFKRG----VLQIDQALALDASTHDIVAHFANDEDDFQL 282
+ D+ Y+ +R VL D AL D S +A D + F
Sbjct: 199 WL---------KFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFK 249
Query: 283 SFANVMVKLGSL 294
+A KL +L
Sbjct: 250 DYAEAHAKLSNL 261
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADGVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPQVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVYLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 35/185 (18%)
Query: 115 VSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEK- 173
+S AD LA AV + GG GR D E LP + ++ +F +
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGSDHLRDVFGKAM 148
Query: 174 GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDR 233
G + V + G HT+G H ++R SG + P T+
Sbjct: 149 GLTDQDIVALSGGHTIGAAH----KER---------------------SGFEGPWTS--- 180
Query: 234 GTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMV 289
P D+ Y+ + L K G+LQ+ D+AL D +V +A DED F +A
Sbjct: 181 -NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQ 239
Query: 290 KLGSL 294
KL L
Sbjct: 240 KLSEL 244
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEGFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVWLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 35/185 (18%)
Query: 115 VSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEK- 173
+S AD LA AV + GG GR D E LP + ++ +F +
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP-EGRLPDATKGSDHLRDVFGKAM 148
Query: 174 GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDR 233
G + V + G HT+G H ++R SG + P T+
Sbjct: 149 GLTDQDIVALSGGHTIGAAH----KER---------------------SGFEGPWTS--- 180
Query: 234 GTPTSLDSQYYNQTLF--KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMV 289
P D+ Y+ + L K G+LQ+ D+AL D +V +A DED F +A
Sbjct: 181 -NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQ 239
Query: 290 KLGSL 294
KL L
Sbjct: 240 KLSEL 244
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 97/265 (36%), Gaps = 65/265 (24%)
Query: 57 LRMHFHDC------FSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEIIDEIKNAVEQK 110
LR+ FHD G D SI+ TI + ++G + EI+ K V +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID------EIVSAQKPFVAKH 95
Query: 111 CPSTVSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQM 169
+S D I A V+ GG+ GR D + ++ D + +P SV ++L
Sbjct: 96 ---NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL-VPEPFDSVDSILAR 151
Query: 170 FAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMT 229
+ GF+ E V +L +H++ A +DP+ P T
Sbjct: 152 MGDAGFSPVEVVSLLASHSIA-----------AADKVDPSI----------------PGT 184
Query: 230 NLDRGTPTSLDSQYYNQTLFKRGV--------------------LQIDQALALDASTHDI 269
D TP DSQ++ +T K + LQ D LA D T
Sbjct: 185 PFDS-TPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACE 243
Query: 270 VAHFANDEDDFQLSFANVMVKLGSL 294
N++ Q FA M K+ L
Sbjct: 244 WQSMVNNQPKIQNRFAATMSKMALL 268
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 89/259 (34%), Gaps = 56/259 (21%)
Query: 55 ALLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCP 112
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 45 VLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEF 99
Query: 113 STVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFA 171
+S D+ +L AV G GR+D + D LP V F
Sbjct: 100 PWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 EKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNL 231
N E V ++GAHT+G H +SG + P T
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLK-------------------------NSGYEGPWT-- 192
Query: 232 DRGTPTSLDSQYY-----------------NQTLFKRGVLQI--DQALALDASTHDIVAH 272
P D+ +Y Q K G + + D +L D IV
Sbjct: 193 --ANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
Query: 273 FANDEDDFQLSFANVMVKL 291
+AND+D F F+ KL
Sbjct: 251 YANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 89/259 (34%), Gaps = 56/259 (21%)
Query: 55 ALLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCP 112
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 45 VLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEF 99
Query: 113 STVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFA 171
+S D+ +L AV G GR+D + D LP V F
Sbjct: 100 PWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 EKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNL 231
N E V ++GAHT+G H +SG + P T
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLK-------------------------NSGYEGPWT-- 192
Query: 232 DRGTPTSLDSQYY-----------------NQTLFKRGVLQI--DQALALDASTHDIVAH 272
D+ +Y Q K G LQ+ D +L D IV
Sbjct: 193 --ANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKE 250
Query: 273 FANDEDDFQLSFANVMVKL 291
+AND+D F F+ KL
Sbjct: 251 YANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 88/258 (34%), Gaps = 56/258 (21%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 46 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 100
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V + GAHT+G H +SG + P T
Sbjct: 161 LNMNDREVVALSGAHTLGKTHLK-------------------------NSGYEGPWT--- 192
Query: 233 RGTPTSLDSQYY-----------------NQTLFKRGVLQI--DQALALDASTHDIVAHF 273
D+ +Y Q K G LQ+ D +L D IV +
Sbjct: 193 -ANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEY 251
Query: 274 ANDEDDFQLSFANVMVKL 291
AND+D F F+ KL
Sbjct: 252 ANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 88/259 (33%), Gaps = 56/259 (21%)
Query: 55 ALLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCP 112
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 45 VLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEF 99
Query: 113 STVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFA 171
+S D+ +L AV G GR+D + D LP V F
Sbjct: 100 PWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 EKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNL 231
N E V ++GAHT+G H +SG + P T
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLK-------------------------NSGYEGPWT-- 192
Query: 232 DRGTPTSLDSQYY-----------------NQTLFKRGVLQI--DQALALDASTHDIVAH 272
D+ +Y Q K G + + D +L D IV
Sbjct: 193 --ANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
Query: 273 FANDEDDFQLSFANVMVKL 291
+AND+D F F+ KL
Sbjct: 251 YANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 88/259 (33%), Gaps = 56/259 (21%)
Query: 55 ALLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCP 112
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 45 VLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEF 99
Query: 113 STVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFA 171
+S D+ +L AV G GR+D + D LP V F
Sbjct: 100 PWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 172 EKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNL 231
N E V ++GAHT+G H +SG + P
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLK-------------------------NSGYEGPWD-- 192
Query: 232 DRGTPTSLDSQYY-----------------NQTLFKRGVLQI--DQALALDASTHDIVAH 272
T D+ +Y Q K G + + D +L D IV
Sbjct: 193 --ATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
Query: 273 FANDEDDFQLSFANVMVKL 291
+AND+D F F+ KL
Sbjct: 251 YANDQDKFFKDFSKAFEKL 269
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 79/223 (35%), Gaps = 35/223 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTN------LDRGTPTSLDSQYYNQTLFK 250
L + G+++ TN L+ + Q K
Sbjct: 179 -----------------LKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSK 221
Query: 251 RGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
G + + D +L D IV +AND+D F F+ KL
Sbjct: 222 SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 79/223 (35%), Gaps = 35/223 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 122
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 123 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 179
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTN------LDRGTPTSLDSQYYNQTLFK 250
L + G+++ TN L+ + Q K
Sbjct: 180 -----------------LKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSK 222
Query: 251 RGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
G + + D +L D IV +AND+D F F+ KL
Sbjct: 223 SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 82/219 (37%), Gaps = 25/219 (11%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRAGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLF--KRGVL 254
L +S E C + +++ NL L+ N + K G +
Sbjct: 184 ----LKNS------GYEGPWGCANNVFTNEFYLNL-LNEDWKLEKNDANNEQWDSKSGYM 232
Query: 255 QI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
+ D +L D IV +AND+D F F+ KL
Sbjct: 233 MLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 79/223 (35%), Gaps = 35/223 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 128 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 184
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTN------LDRGTPTSLDSQYYNQTLFK 250
L + G+++ TN L+ + Q K
Sbjct: 185 -----------------LKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSK 227
Query: 251 RGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
G + + D +L D IV +AND+D F F+ KL
Sbjct: 228 SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + F A ++ + L+ + Q K G + +
Sbjct: 184 ----LKNSGYEGPFG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 95/259 (36%), Gaps = 23/259 (8%)
Query: 38 IFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR- 95
++N + + ++ L+R+ +H + + D T R + E + SN ++
Sbjct: 22 VYNAIALKI-AEKKCGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQN 80
Query: 96 GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEV 154
G++ ++ I K +S D+ +L AV G GR+D + D
Sbjct: 81 GFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNG 135
Query: 155 NLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQEL 214
LP V F N E V ++GAH +G H L S + F
Sbjct: 136 RLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTH-------LKRSGYEGPFG--- 185
Query: 215 SKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAH 272
A ++ + L+ + Q K G + + D +L D IV
Sbjct: 186 --AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 243
Query: 273 FANDEDDFQLSFANVMVKL 291
+AND+D F F+ KL
Sbjct: 244 YANDQDKFFKDFSKAFEKL 262
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPWG-----AANNVFTNEKYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 46 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 100
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 161 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNCFTNEFYLNLLN 208
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 209 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 291 L 291
L
Sbjct: 269 L 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 28/265 (10%)
Query: 38 IFNVVQRRFNTDRSITGA------LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGS 90
++N + + D A L+R+ +H + + D T R + E + S
Sbjct: 24 VYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 83
Query: 91 NLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR- 148
N ++ G++ ++ I K +S D+ +L AV G GR+D
Sbjct: 84 NAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPED 138
Query: 149 SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDP 208
+ D LP V F N E V ++GAH +G H L +S +
Sbjct: 139 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTH-------LKNSGYEG 191
Query: 209 AFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI--DQALALDAST 266
+ A ++ + L+ + Q K G + + D +L D
Sbjct: 192 PWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 246
Query: 267 HDIVAHFANDEDDFQLSFANVMVKL 291
IV +AND+D F F+ KL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ FH + + D T R + E + SN ++ G++ ++ I K
Sbjct: 48 LVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 102
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 163 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNVFTNEFYLNLLN 210
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 211 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 291 L 291
L
Sbjct: 271 L 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 46 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 100
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 161 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNVFTNEFYLNLLN 208
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 209 ENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 291 L 291
L
Sbjct: 269 L 269
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 182 ----LKNSGYEGPWG-----AANNVFTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMHL 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 91/265 (34%), Gaps = 28/265 (10%)
Query: 38 IFNVVQRRFNTDRSITGA------LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGS 90
++N + + D A L+R+ +H + + D T R + E + S
Sbjct: 22 VYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 81
Query: 91 NLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR- 148
N ++ G++ ++ I K +S D+ +L AV G GR+D
Sbjct: 82 NAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 149 SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDP 208
+ D LP V F N E V ++GAH +G H +
Sbjct: 137 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANN 196
Query: 209 AFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI--DQALALDAST 266
F E + L+ + Q K G + + D +L D
Sbjct: 197 VFTNEFY------------LNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 244
Query: 267 HDIVAHFANDEDDFQLSFANVMVKL 291
IV +AND+D F F+ KL
Sbjct: 245 LSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 91/265 (34%), Gaps = 28/265 (10%)
Query: 38 IFNVVQRRFNTDRSITGA------LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGS 90
++N + + D A L+R+ +H + + D T R + E + S
Sbjct: 24 VYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 83
Query: 91 NLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR- 148
N ++ G++ ++ I K +S D+ +L AV G GR+D
Sbjct: 84 NAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 149 SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDP 208
+ D LP V F N E V ++GAH +G H +
Sbjct: 139 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANN 198
Query: 209 AFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI--DQALALDAST 266
F E + L+ + Q K G + + D +L D
Sbjct: 199 VFTNEFY------------LNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 246
Query: 267 HDIVAHFANDEDDFQLSFANVMVKL 291
IV +AND+D F F+ KL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 45 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 99
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 100 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 160 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNVFTNEFYLNLLN 207
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 208 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 267
Query: 291 L 291
L
Sbjct: 268 L 268
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 46 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 100
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 161 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNVFTNEFYLNLLN 208
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 209 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 291 L 291
L
Sbjct: 269 L 269
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 88/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 45 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 99
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 100 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L S + F A ++ + L+
Sbjct: 160 LNMNDREVVALMGAHALGKTH-------LKRSGYEGPFG-----AANNVFTNEFYLNLLN 207
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 208 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEK 267
Query: 291 L 291
L
Sbjct: 268 L 268
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 46 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 100
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 161 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNVFTNEFYLNLLN 208
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 209 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 291 L 291
L
Sbjct: 269 L 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 46 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 100
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 161 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNVFTNEFYLNLLN 208
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 209 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 268
Query: 291 L 291
L
Sbjct: 269 L 269
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPWG-----AANNVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPYG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 182 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 91/265 (34%), Gaps = 28/265 (10%)
Query: 38 IFNVVQRRFNTDRSITGA------LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGS 90
++N + + D A L+R+ +H + + D T R + E + S
Sbjct: 24 VYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPS 83
Query: 91 NLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR- 148
N ++ G++ ++ I K +S D+ +L AV G GR+D
Sbjct: 84 NAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 149 SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDP 208
+ D LP V F N E V ++GAH +G H +
Sbjct: 139 TTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANN 198
Query: 209 AFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI--DQALALDAST 266
F E + L+ + Q K G + + D +L D
Sbjct: 199 VFTNEFY------------LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 246
Query: 267 HDIVAHFANDEDDFQLSFANVMVKL 291
IV +AND+D F F+ KL
Sbjct: 247 LSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 182 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 182 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 28/265 (10%)
Query: 38 IFNVVQRRFNTDRSITGA------LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGS 90
++N + + D A L+R+ +H + + D T R + E + S
Sbjct: 19 VYNAIALKLREDDEYDNAIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPS 78
Query: 91 NLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR- 148
N ++ G++ ++ I K +S D+ +L AV G GR+D
Sbjct: 79 NAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 149 SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDP 208
+ D LP V F N E V ++GAH +G H L +S +
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH-------LKNSGYEG 186
Query: 209 AFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI--DQALALDAST 266
+ A ++ + L+ + Q K G + + D +L D
Sbjct: 187 PWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKY 241
Query: 267 HDIVAHFANDEDDFQLSFANVMVKL 291
IV +AND+D F F+ KL
Sbjct: 242 LSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 184 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTH--- 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 182 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 43 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 97
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 157
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H R A + + ++D +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK----RSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKN 213
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
DS K G + + D +L D IV +AND+D F F+ K
Sbjct: 214 DANNEQWDS--------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 265
Query: 291 L 291
L
Sbjct: 266 L 266
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 182 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 232
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 233 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 77/217 (35%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
+ F E + ++D + DS K G + +
Sbjct: 187 SGYEGPQGAANNVFTNEFY----LNLLNEDWKLEKNDANNEQWDS--------KSGYMML 234
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 128 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 184
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 185 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 235
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 236 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRG--VL 254
L +S + + A ++ + L+ + Q K G +L
Sbjct: 184 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIML 234
Query: 255 QIDQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 128 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 184
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 185 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 235
Query: 257 DQALAL--DASTHDIVAHFANDEDDFQLSFANVMVKL 291
A +L D IV +AND+D F F+ KL
Sbjct: 236 PTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 76/217 (35%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
+ F E ++D + DS K G + +
Sbjct: 182 SGYEGPQGAANNVFTNEFYLNLL----NEDWKLEKNDANNEQWDS--------KSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK- 180
Query: 197 FQDRLADSDMDPAFAQELSKACEASSG-SDDPMTN------LDRGTPTSLDSQYYNQTLF 249
+ E G +++ TN L+ + Q
Sbjct: 181 ------------------NSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDS 222
Query: 250 KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
K G + + D +L D IV +AND+D F F+ KL
Sbjct: 223 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 184 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSG-SDDPMTN------LDRGTPTSLDSQYYNQTLF 249
+ E G +++ TN L+ + Q
Sbjct: 184 ------------------NSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 250 KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
K G + + D +L D IV +AND+D F F+ KL
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 122
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 123 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK- 181
Query: 197 FQDRLADSDMDPAFAQELSKACEASSG-SDDPMTN------LDRGTPTSLDSQYYNQTLF 249
+ E G +++ TN L+ + Q
Sbjct: 182 ------------------NSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDS 223
Query: 250 KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
K G + + D +L D IV +AND+D F F+ KL
Sbjct: 224 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 184 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSG-SDDPMTN------LDRGTPTSLDSQYYNQTLF 249
+ E G +++ TN L+ + Q
Sbjct: 184 ------------------NSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 250 KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
K G + + D +L D IV +AND+D F F+ KL
Sbjct: 226 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK- 185
Query: 197 FQDRLADSDMDPAFAQELSKACEASSG-SDDPMTN------LDRGTPTSLDSQYYNQTLF 249
+ E G +++ TN L+ + Q
Sbjct: 186 ------------------NSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDS 227
Query: 250 KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
K G + + D +L D IV +AND+D F F+ KL
Sbjct: 228 KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 184 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 235 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 88/241 (36%), Gaps = 22/241 (9%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + N ++ G++ ++ I K
Sbjct: 48 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLEPI-----HKEFP 102
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
N E V ++GAH +G H L +S + + A ++ + L+
Sbjct: 163 LNMNDREVVALMGAHALGKTH-------LKNSGYEGPWG-----AANNVFTNEFYLNLLN 210
Query: 233 RGTPTSLDSQYYNQTLFKRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVK 290
+ Q K G + + D +L D IV +AND+D F F+ K
Sbjct: 211 EDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEK 270
Query: 291 L 291
L
Sbjct: 271 L 271
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V + GAH +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 128 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 184
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 185 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 235
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
+ +L D IV +AND+D F F+ KL
Sbjct: 236 PTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 56 LLRMHFHDCFSGNVCD-ASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPS 113
L+R+ +H + + D T R + E + SN ++ G++ ++ I K
Sbjct: 46 LVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFP 100
Query: 114 TVSCADIIALATRDAVALAGGLNYSLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAE 172
+S D+ +L AV G GR+D + D LP V F
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 173 KGFNTTETVVILGAHTVGVVHCS 195
N E V ++GAH +G H
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK 183
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 127 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTH--- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 184 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 234
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
+ +L D IV +AND+D F F+ KL
Sbjct: 235 PTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 79/224 (35%), Gaps = 35/224 (15%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G H
Sbjct: 125 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK- 183
Query: 197 FQDRLADSDMDPAFAQELSKACEASSG-SDDPMTN------LDRGTPTSLDSQYYNQTLF 249
+ E G +++ TN L+ + Q
Sbjct: 184 ------------------NSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDS 225
Query: 250 KRGVLQI--DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
K G + + + +L D IV +AND+D F F+ KL
Sbjct: 226 KSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GAH +G
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG------ 175
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
+ L +S + + A ++ + L+ + Q K G + +
Sbjct: 176 -KTELKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GA +G H
Sbjct: 122 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTH--- 178
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 179 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 229
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 230 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + E + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 122
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GA +G H
Sbjct: 123 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTH--- 179
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 180 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 230
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 231 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|2HRO|A Chain A, Structure Of The Full-Lenght Enzyme I Of The Pts System
From Staphylococcus Carnosus
Length = 573
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 86 KDSGSNLTVRGYEIIDEIKNAVEQKCPSTVSCADIIA 122
++ +NL GYE+ D+I+ + + PST + ADI A
Sbjct: 408 EEERANLKNEGYEVADDIELGIMVEIPSTAALADIFA 444
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 21/217 (9%)
Query: 79 TIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNY 137
T R + + + SN ++ G++ ++ I K +S D+ +L AV G
Sbjct: 68 TYRFKKQFNDPSNAGLQNGFKFLEPI-----HKEFPWISSGDLFSLGGVTAVQEMQGPKI 122
Query: 138 SLPTGRLDGLR-SNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSF 196
GR+D + D LP V F N E V ++GA +G H
Sbjct: 123 PWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTH--- 179
Query: 197 FQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256
L +S + + A ++ + L+ + Q K G + +
Sbjct: 180 ----LKNSGYEGPWG-----AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMML 230
Query: 257 --DQALALDASTHDIVAHFANDEDDFQLSFANVMVKL 291
D +L D IV +AND+D F F+ KL
Sbjct: 231 PTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 51/202 (25%)
Query: 115 VSCADIIALATRDAVA-LAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVL-QMFAE 172
V+ D IA A V+ G GR + ++ D + +P ++ VL +M
Sbjct: 104 VTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEATQAAPDGL-VPEPFHTIDQVLARMLDA 162
Query: 173 KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLD 232
GF+ ETV +L AH++ A +D+DP S P +
Sbjct: 163 GGFDEIETVXLLSAHSIA-----------AANDVDPTI-------------SGLPFDS-- 196
Query: 233 RGTPTSLDSQYYNQTLF-------KRGV-------------LQIDQALALDASTHDIVAH 272
TP DSQ++ +T K G+ LQ D A D+ T
Sbjct: 197 --TPGQFDSQFFVETQLRGTAFPGKTGIQGTVMSPLKGEMRLQTDHLFARDSRTACEWQS 254
Query: 273 FANDEDDFQLSFANVMVKLGSL 294
F N++ Q F + L +L
Sbjct: 255 FVNNQTKLQEDFQFIFTALSTL 276
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 157 PGTSLSVPNVLQMFAEKGFNTTETV-VILGAHTVGVVHCS 195
P + S ++ + F G N TETV +I G H G H +
Sbjct: 261 PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGA 300
>pdb|4AXQ|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution
Length = 163
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 237 TSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVAHFANDEDD 279
T+ DS+ Y + + K V +I L L +++ V F+N D
Sbjct: 103 TTADSELYRERVVKEAVHEIGHVLGLKHCSNNCVMRFSNSVQD 145
>pdb|3ZVS|B Chain B, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
Length = 160
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 237 TSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVAHFANDEDD 279
T+ DS+ Y + + K V +I L L +++ V F+N D
Sbjct: 100 TTADSELYRERVVKEAVHEIGHVLGLKHCSNNCVMRFSNSVQD 142
>pdb|1A9B|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9B|D Chain D, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
pdb|1A9E|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To Hla-
B3501 Due To Nonstandard Positioning Of The C-Terminus
Length = 277
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 40 NVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYE- 98
+++QR + D G LLR H + G I ++ + S D+ + +T R +E
Sbjct: 93 HIIQRMYGCDLGPDGRLLRGHDQSAYDGK---DYIALNEDLSSWTAADTAAQITQRKWEA 149
Query: 99 --IIDEIKNAVEQKC 111
+ ++++ +E C
Sbjct: 150 ARVAEQLRAYLEGLC 164
>pdb|3ZVS|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|3ZVS|C Chain C, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|4A3W|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 2.16 A Resolution Complexed
With Citrate
Length = 160
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 237 TSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVAHFANDEDD 279
T+ DS+ Y + + K V +I L L +++ V F+N D
Sbjct: 100 TTADSELYRERVVKEAVHEIGHVLGLKHCSNNCVMRFSNSVQD 142
>pdb|1CG9|A Chain A, Complex Recognition Of The Supertypic Bw6-Determinant On
Hla-B And-C Molecules By The Monoclonal Antibody Sfr8-B6
Length = 277
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 40 NVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYE- 98
+++QR + D G LLR H + G I ++ + S D+ + +T R +E
Sbjct: 93 HIIQRMYGCDLGPDGRLLRGHDQSAYDGK---DYIALNEDLSSWTAADTAAQITQRKWEA 149
Query: 99 --IIDEIKNAVEQKC 111
+ ++++ +E C
Sbjct: 150 ARVAEQLRAYLEGLC 164
>pdb|1A1N|A Chain A, Mhc Class I Molecule B3501 Complexed With Peptide Vplrpmty
From The Nef Protein (75-82) Of Hiv1
Length = 276
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 40 NVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYE- 98
+++QR + D G LLR H + G I ++ + S D+ + +T R +E
Sbjct: 93 HIIQRMYGCDLGPDGRLLRGHDQSAYDGK---DYIALNEDLSSWTAADTAAQITQRKWEA 149
Query: 99 --IIDEIKNAVEQKC 111
+ ++++ +E C
Sbjct: 150 ARVAEQLRAYLEGLC 164
>pdb|1XH3|A Chain A, Conformational Restraints And Flexibility Of 14-Meric
Peptides In Complex With Hla-B3501
pdb|1ZHK|A Chain A, Crystal Structure Of Hla-B3501 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|1ZSD|A Chain A, Crystal Structure Of Hla-B3501 Presenting An 11-Mer Ebv
Antigen Eplpqgqltay
pdb|2AXG|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope Is
Controlled By Its Mhc-Bound Conformation
pdb|2H6P|A Chain A, Crystal Structure Of Hla-B3501 Presenting The Human
Cytochrome P450 Derived Peptide, Kpivvlhgy
pdb|2CIK|A Chain A, Insights Into Crossreactivity In Human Allorecognition:
The Structure Of Hla-B35011 Presenting An Epitope
Derived From Cytochrome P450.
pdb|2FYY|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing Human
Mhc Restriction
pdb|2NX5|A Chain A, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|F Chain F, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|K Chain K, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|Q Chain Q, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|3MV7|A Chain A, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
pdb|3MV8|A Chain A, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
pdb|3MV9|A Chain A, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
pdb|3LKN|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1918 Strain
pdb|3LKO|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1934 Strain
pdb|3LKP|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1972 Strain
pdb|3LKQ|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1977 Strain
pdb|3LKR|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 2009 H1n1 Swine Origin Strain
pdb|3LKS|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1980 Strain
Length = 276
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 40 NVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYE- 98
+++QR + D G LLR H + G I ++ + S D+ + +T R +E
Sbjct: 93 HIIQRMYGCDLGPDGRLLRGHDQSAYDGK---DYIALNEDLSSWTAADTAAQITQRKWEA 149
Query: 99 --IIDEIKNAVEQKC 111
+ ++++ +E C
Sbjct: 150 ARVAEQLRAYLEGLC 164
>pdb|1A1O|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide Ls6
(Kpivqydnf) From The Malaria Parasite P. Falciparum
Length = 276
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 40 NVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYE- 98
+++QR + D G LLR H + G I ++ + S D+ + +T R +E
Sbjct: 93 HIIQRMYGCDLGPDGRLLRGHDQSAYDGK---DYIALNEDLSSWTAADTAAQITQRKWEA 149
Query: 99 --IIDEIKNAVEQKC 111
+ ++++ +E C
Sbjct: 150 ARVAEQLRAYLEGLC 164
>pdb|1A1M|A Chain A, Mhc Class I Molecule B5301 Complexed With Peptide
Tpydinqml From Gag Protein Of Hiv2
Length = 278
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 40 NVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYE- 98
+++QR + D G LLR H + G I ++ + S D+ + +T R +E
Sbjct: 93 HIIQRMYGCDLGPDGRLLRGHDQSAYDGK---DYIALNEDLSSWTAADTAAQITQRKWEA 149
Query: 99 --IIDEIKNAVEQKC 111
+ ++++ +E C
Sbjct: 150 ARVAEQLRAYLEGLC 164
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 29/107 (27%)
Query: 156 LPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELS 215
+PG +V +L F + GF+ E V +L AH++ A + L+
Sbjct: 152 IPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSL-------------------ASQEGLN 192
Query: 216 KACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQIDQALAL 262
A S LD TP D+Q+Y +TL K G Q +L
Sbjct: 193 SAIFRSP--------LDS-TPQVFDTQFYIETLLK-GTTQPGPSLGF 229
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 203 DSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQIDQALA 261
D+ M+ AQ LS+ G LDR SLD+ + Q L K G++ +DQA A
Sbjct: 18 DATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLV-LDQAEA 75
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 62 HDCFSGNVCDASILID----STIRSQPEKDSGSN-LTVRGYE-IIDEIKN-AVEQKCPST 114
D G V A+ + ++ PE+D +N L YE I IK+ AVE+ ST
Sbjct: 207 KDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSST 266
Query: 115 VSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEK 173
D++ L R+ LNY G L L S+ D + + +P+ ++F K
Sbjct: 267 PLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWK 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,993,280
Number of Sequences: 62578
Number of extensions: 352929
Number of successful extensions: 1247
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 196
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)