Query 040171
Match_columns 329
No_of_seqs 174 out of 1393
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-104 3E-109 761.1 24.7 304 4-312 7-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2.5E-97 5E-102 708.3 24.4 289 21-311 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 5E-71 1.1E-75 510.6 9.2 224 38-276 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 3.9E-69 8.5E-74 509.7 21.7 231 36-309 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 6.5E-66 1.4E-70 482.1 20.6 227 33-297 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 5.9E-65 1.3E-69 474.3 21.9 232 24-297 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 2.9E-64 6.3E-69 484.2 21.5 241 34-316 16-291 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2.8E-63 6E-68 462.6 21.4 219 37-297 19-248 (251)
9 cd00314 plant_peroxidase_like 100.0 7.4E-59 1.6E-63 434.7 18.9 222 37-293 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.4E-56 3.1E-61 437.8 19.0 257 36-302 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.1E-53 2.3E-58 441.0 20.1 253 36-298 55-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 4.4E-50 9.6E-55 412.2 20.0 253 36-299 57-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2.9E-50 6.3E-55 375.2 13.1 232 22-293 14-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 9.7E-41 2.1E-45 314.9 18.4 221 38-295 15-296 (297)
15 PRK15061 catalase/hydroperoxid 100.0 8.3E-35 1.8E-39 299.6 18.8 221 39-296 441-722 (726)
16 TIGR00198 cat_per_HPI catalase 100.0 1E-34 2.2E-39 300.3 17.9 216 42-297 437-711 (716)
17 COG0376 KatG Catalase (peroxid 100.0 1.5E-30 3.3E-35 257.7 15.0 253 37-295 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 2.5E-13 5.4E-18 136.0 14.8 216 40-296 452-726 (730)
19 PTZ00411 transaldolase-like pr 74.7 13 0.00029 36.7 7.9 147 115-284 161-326 (333)
20 PF11895 DUF3415: Domain of un 68.9 5.6 0.00012 31.3 3.0 33 279-315 2-34 (80)
21 TIGR00874 talAB transaldolase. 55.9 53 0.0011 32.3 7.9 143 115-281 149-310 (317)
22 cd00957 Transaldolase_TalAB Tr 54.9 36 0.00078 33.4 6.5 65 114-178 148-219 (313)
23 PRK12309 transaldolase/EF-hand 53.8 74 0.0016 32.2 8.8 88 114-216 154-258 (391)
24 PRK05269 transaldolase B; Prov 50.9 57 0.0012 32.0 7.2 143 115-282 151-311 (318)
25 PRK12346 transaldolase A; Prov 41.9 27 0.00058 34.3 3.4 89 114-217 149-254 (316)
26 COG3763 Uncharacterized protei 31.8 69 0.0015 24.6 3.5 30 36-65 23-52 (71)
27 KOG0400 40S ribosomal protein 24.7 43 0.00093 28.9 1.4 33 161-193 31-64 (151)
28 PF15656 Tox-HDC: Toxin with a 23.5 83 0.0018 26.6 2.9 24 163-187 14-39 (119)
29 PF06163 DUF977: Bacterial pro 21.7 1.1E+02 0.0024 26.1 3.4 31 282-312 72-103 (127)
30 PRK01844 hypothetical protein; 21.4 1.3E+02 0.0028 23.3 3.3 29 37-65 24-52 (72)
31 COG1105 FruK Fructose-1-phosph 20.6 1.4E+02 0.0031 29.2 4.4 52 155-221 105-158 (310)
32 PLN00017 photosystem I reactio 20.0 57 0.0012 26.0 1.2 22 272-293 37-58 (90)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.3e-104 Score=761.13 Aligned_cols=304 Identities=42% Similarity=0.708 Sum_probs=283.2
Q ss_pred hHHHHHHHHHhhhhhccCCCccccccCCccHHHHHHHHHHHHHhhCCCcHHHHHHHHhhcccCCCCCCcceeccCCCCCC
Q 040171 4 KCSFLLFFIFILPLALAKLTPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQ 83 (329)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~~GcDgSill~~~~~~~ 83 (329)
++.++|++...++++.++|+++||++|||++|+||+++|++.+.+||+++|++|||+||||||+ ||||||||+++ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~-GCDaSvLl~~~---~ 82 (324)
T PLN03030 7 ILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVR-GCDASILIDGS---N 82 (324)
T ss_pred HHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheec-CCceEEeeCCC---c
Confidence 3444444445555566789999999999999999999999999999999999999999999999 99999999964 3
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCC-CCCCCCCC
Q 040171 84 PEKDSGSNLTVRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEV-NLPGTSLS 162 (329)
Q Consensus 84 ~E~~~~~N~~L~g~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~LP~p~~~ 162 (329)
.||++++|.+|+||++|+.||++||+.||++|||||||||||||||+++|||.|+|++||||+++|.+.++ +||.|+.+
T Consensus 83 ~Ek~a~~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~ 162 (324)
T PLN03030 83 TEKTALPNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDS 162 (324)
T ss_pred ccccCCCCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999887777 79999999
Q ss_pred HHHHHHHHHHcCCCcccceeecccceeccccccccCCcC---------CCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCC
Q 040171 163 VPNVLQMFAEKGFNTTETVVILGAHTVGVVHCSFFQDRL---------ADSDMDPAFAQELSKACEASSGSDDPMTNLDR 233 (329)
Q Consensus 163 ~~~l~~~F~~~Gls~~dlVaLsGaHTiG~~hc~~f~~Rl---------~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~ 233 (329)
+++|++.|+++||+.+|||+||||||||++||.+|.+|| +||+||+.|+++|++.||..+... ..+++|+
T Consensus 163 ~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~-~~~~lD~ 241 (324)
T PLN03030 163 IDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGS-RRIALDT 241 (324)
T ss_pred HHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCC-ccccCCC
Confidence 999999999999999999999999999999999999998 389999999999999999643332 4678999
Q ss_pred CCCcccChHHHHHhhhcccCccchhhhccCcchHHHHhhhccCh----hHHHHHHHHHHHHHhcCCCCCCCCcccccccc
Q 040171 234 GTPTSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVAHFANDE----DDFQLSFANVMVKLGSLQVLTDGQGEIRQNCR 309 (329)
Q Consensus 234 ~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~ 309 (329)
.||.+|||+||++|+.++|+|+|||+|++|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||||+|+
T Consensus 242 ~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~ 321 (324)
T PLN03030 242 GSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCS 321 (324)
T ss_pred CCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceecccc
Confidence 99999999999999999999999999999999999999999885 59999999999999999999999999999999
Q ss_pred ccc
Q 040171 310 AFN 312 (329)
Q Consensus 310 ~~n 312 (329)
.+|
T Consensus 322 ~vN 324 (324)
T PLN03030 322 AIN 324 (324)
T ss_pred ccC
Confidence 998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-97 Score=708.28 Aligned_cols=289 Identities=51% Similarity=0.873 Sum_probs=278.3
Q ss_pred CCCccccccCCccHHHHHHHHHHHHHhhCCCcHHHHHHHHhhcccCCCCCCcceeccCCCCCCCCCCCCCCCCCchhHHH
Q 040171 21 KLTPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDSTIRSQPEKDSGSNLTVRGYEII 100 (329)
Q Consensus 21 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~~GcDgSill~~~~~~~~E~~~~~N~~L~g~~~I 100 (329)
||+++||+++||++|+||+++|++.+.++++++|++|||+||||||+ ||||||||+++.+..+|+++++|.+|+||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~-GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVR-GCDASVLLDSTANNTSEKDAPPNLSLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhcc-CcceeEEecCCCCCchhccCCCCCCcchhHHH
Confidence 59999999999999999999999999999999999999999999999 99999999988777899999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHcCCCccc
Q 040171 101 DEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEV-NLPGTSLSVPNVLQMFAEKGFNTTE 179 (329)
Q Consensus 101 d~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~LP~p~~~~~~l~~~F~~~Gls~~d 179 (329)
+.||+++|+.||++||||||||||||+||+++|||.|+|++||+|+.+|.+..+ +||+|+.+++++++.|+++||+++|
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999999999999999999999999999998877665 8999999999999999999999999
Q ss_pred ceeecccceeccccccccCCcC--------CCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhcc
Q 040171 180 TVVILGAHTVGVVHCSFFQDRL--------ADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKR 251 (329)
Q Consensus 180 lVaLsGaHTiG~~hc~~f~~Rl--------~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~ 251 (329)
||+|+||||||++||.+|.+|+ +||+|++.|+..|++.||..+... +.+++|..||.+|||+||++|+.++
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~-~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDD-TLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred heeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCC-ccccCCCCCCCccccHHHHHHHhcc
Confidence 9999999999999999999998 589999999999999999754333 6789999999999999999999999
Q ss_pred cCccchhhhccCcchHHHHhhhccChhHHHHHHHHHHHHHhcCCCCCCCCcccccccccc
Q 040171 252 GVLQIDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCRAF 311 (329)
Q Consensus 252 gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 311 (329)
|+|+||++|+.|++|+++|++||.||+.|+++|++||+||++++|+||.+||||++|+.+
T Consensus 239 glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=5e-71 Score=510.63 Aligned_cols=224 Identities=47% Similarity=0.787 Sum_probs=206.3
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHhhcccC-CCCCCcceeccCCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHhhhCCCCC
Q 040171 38 IFNVVQRRFNTDRSITGALLRMHFHDCFS-GNVCDASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQKCPSTV 115 (329)
Q Consensus 38 V~~~v~~~~~~~~~~a~~llRL~FHDcfv-~~GcDgSill~~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~le~~cp~~V 115 (329)
||++|++.+..+++++|+||||+|||||+ + |||||||+. ..|+++++|.+|+ ++++|+.||+++|++||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~-GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYG-GCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHT-SSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHcccccccc-ccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 79999999999999999999999999999 8 999999983 4799999999997 99999999999999999999
Q ss_pred CHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHcCCCcccceeecccceeccccc
Q 040171 116 SCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEV-NLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTVGVVHC 194 (329)
Q Consensus 116 ScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTiG~~hc 194 (329)
||||||+||||+||+++|||.|+|++||+|+.++.+.++ +||.|+.++++|++.|+++|||++|||||+||||||++||
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 999999999999999999999999999999999998765 7999999999999999999999999999999999999999
Q ss_pred cccCCcC---CCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhcccCccchhhhccCcchHHHHh
Q 040171 195 SFFQDRL---ADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQIDQALALDASTHDIVA 271 (329)
Q Consensus 195 ~~f~~Rl---~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~~~V~ 271 (329)
.+|. |+ +||+||+.|+.+ .| ..+.+ +.+++| ||.+|||+||++|++++|+|+||++|++|++|+++|+
T Consensus 155 ~~f~-rl~~~~dp~~d~~~~~~---~C-~~~~~--~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~ 225 (230)
T PF00141_consen 155 SSFS-RLYFPPDPTMDPGYAGQ---NC-NSGGD--NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVE 225 (230)
T ss_dssp GCTG-GTSCSSGTTSTHHHHHH---SS-STSGC--TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHH
T ss_pred cccc-cccccccccccccccee---cc-CCCcc--cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHH
Confidence 9999 99 689999999988 99 44432 467888 9999999999999999999999999999999999999
Q ss_pred hhccC
Q 040171 272 HFAND 276 (329)
Q Consensus 272 ~yA~d 276 (329)
+||+|
T Consensus 226 ~yA~d 230 (230)
T PF00141_consen 226 RYAQD 230 (230)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 99976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.9e-69 Score=509.69 Aligned_cols=231 Identities=24% Similarity=0.350 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHhhccc-------CCCCCCcceeccCCCCCCCCCCCCCCCCC-chhHHHHHHHHHH
Q 040171 36 SIIFNVVQRRFNTDRSITGALLRMHFHDCF-------SGNVCDASILIDSTIRSQPEKDSGSNLTV-RGYEIIDEIKNAV 107 (329)
Q Consensus 36 ~iV~~~v~~~~~~~~~~a~~llRL~FHDcf-------v~~GcDgSill~~~~~~~~E~~~~~N~~L-~g~~~Id~iK~~l 107 (329)
+.+++++ ..+.++|+++|.+|||+||||| ++ ||||||+++ +|+++++|.+| +||++|+.||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~g-GcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~ 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTG-GPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCC-CCCeeeecc------cccCCccccchHHHHHHHHHHHHHc
Confidence 4455666 4477899999999999999999 67 999999984 69999999999 5999999999987
Q ss_pred hhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccc
Q 040171 108 EQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAH 187 (329)
Q Consensus 108 e~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaH 187 (329)
++|||||||+||||+||+.+|||.|+|++||+|++++.+.. +||+|+.+++++++.|+++||+++|||+|+|||
T Consensus 87 -----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAH 160 (289)
T PLN02608 87 -----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEG-RLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGH 160 (289)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccC-CCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 48999999999999999999999999999999999987543 799999999999999999999999999999999
Q ss_pred eeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhc--ccC--ccchhhhccC
Q 040171 188 TVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK--RGV--LQIDQALALD 263 (329)
Q Consensus 188 TiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~--~gl--l~SD~~L~~d 263 (329)
|||++||. |+ +..+ +| ..||.+|||+||++|+.+ +|+ |+||++|+.|
T Consensus 161 TiG~ahc~----r~--------------------g~~g-~~----~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d 211 (289)
T PLN02608 161 TLGRAHPE----RS--------------------GFDG-PW----TKEPLKFDNSYFVELLKGESEGLLKLPTDKALLED 211 (289)
T ss_pred cccccccc----CC--------------------CCCC-CC----CCCCCccChHHHHHHHcCCcCCccccccCHhhhcC
Confidence 99999995 31 1111 22 369999999999999999 788 7999999999
Q ss_pred cchHHHHhhhccChhHHHHHHHHHHHHHhcCCCCCCCCcccccccc
Q 040171 264 ASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCR 309 (329)
Q Consensus 264 ~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~ 309 (329)
++|+++|+.||.||+.|+++|+.||+||++|+|+||++||+.+.-+
T Consensus 212 ~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 212 PEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 9999999999999999999999999999999999999999987643
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=6.5e-66 Score=482.08 Aligned_cols=227 Identities=28% Similarity=0.397 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHHHHhhCCCcHHHHHHHHhhcccCCCCCCcceeccC---CCCCCCCCCCCCCCCC-chhHHHHHHHHHHh
Q 040171 33 EAESIIFNVVQRRFNTDRSITGALLRMHFHDCFSGNVCDASILIDS---TIRSQPEKDSGSNLTV-RGYEIIDEIKNAVE 108 (329)
Q Consensus 33 ~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~~GcDgSill~~---~~~~~~E~~~~~N~~L-~g~~~Id~iK~~le 108 (329)
..++||+++|++.+. +++++|++|||+||||| +||+|+++++ +..+.+|+++++|.+| ++|++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~---~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG---TYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh---ccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc-
Confidence 457899999999999 99999999999999999 4555555532 2233479999999999 8999999999987
Q ss_pred hhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHcCCCcccceeeccc
Q 040171 109 QKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEV--NLPGTSLSVPNVLQMFAEKGFNTTETVVILGA 186 (329)
Q Consensus 109 ~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~--~LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGa 186 (329)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....+ +||.|+.+++++++.|+++||+++|||+|+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4 89999999999999999999999999999999999886544 79999999999999999999999999999999
Q ss_pred ceeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhccc--------Cccchh
Q 040171 187 HTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRG--------VLQIDQ 258 (329)
Q Consensus 187 HTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~g--------ll~SD~ 258 (329)
||||++||..+ +..+ ++ ..||.+|||+||++|+.++| +|+||+
T Consensus 162 HTiG~a~c~~~------------------------~~~g-~~----~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~ 212 (253)
T cd00691 162 HTLGRCHKERS------------------------GYDG-PW----TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDK 212 (253)
T ss_pred ceeecccccCC------------------------CCCC-CC----CCCCCcccHHHHHHHhcCCCccCcCcceechhhH
Confidence 99999999531 0111 22 36999999999999999999 999999
Q ss_pred hhccCcchHHHHhhhccChhHHHHHHHHHHHHHhcCCCC
Q 040171 259 ALALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVL 297 (329)
Q Consensus 259 ~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 297 (329)
+|+.|++|+++|+.||+|++.|+++|++||+||+++||.
T Consensus 213 ~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 213 ALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred HHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=5.9e-65 Score=474.29 Aligned_cols=232 Identities=25% Similarity=0.401 Sum_probs=206.4
Q ss_pred cccccc--CCccHHHHHHHHHHHHHhhCCCcHHHHHHHHhh-----cccCC-CCCCcceeccCCCCCCCCCCCCCCCCC-
Q 040171 24 PNFYSS--SCPEAESIIFNVVQRRFNTDRSITGALLRMHFH-----DCFSG-NVCDASILIDSTIRSQPEKDSGSNLTV- 94 (329)
Q Consensus 24 ~~fY~~--sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FH-----Dcfv~-~GcDgSill~~~~~~~~E~~~~~N~~L- 94 (329)
.+||.. -|+.+++.++..+++.+ .+++++|.||||+|| ||+++ +||||||.. .+|+++++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 356663 37888899999999977 789999999999999 66664 399999944 379999999999
Q ss_pred chhHHHHHHHHHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-c
Q 040171 95 RGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAE-K 173 (329)
Q Consensus 95 ~g~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~LP~p~~~~~~l~~~F~~-~ 173 (329)
++|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+.. +||.|+.++++|++.|++ +
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~-~lP~p~~~~~~l~~~F~~~~ 149 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEG-RLPDATKGCDHLRDVFAKQM 149 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccC-CCCCCCcCHHHHHHHHHHhc
Confidence 7999999999998 58999999999999999999999999999999999987654 799999999999999997 6
Q ss_pred CCCcccceeecccceeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhc--c
Q 040171 174 GFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK--R 251 (329)
Q Consensus 174 Gls~~dlVaLsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~--~ 251 (329)
|||++|||+|+||||||++||. |+ +..+ +| ..||.+|||+||++|+.+ +
T Consensus 150 Gl~~~d~VaLsGaHTiG~~hc~----r~--------------------~~~g-~~----~~tp~~fDn~Yy~~ll~~~~~ 200 (250)
T PLN02364 150 GLSDKDIVALSGAHTLGRCHKD----RS--------------------GFEG-AW----TSNPLIFDNSYFKELLSGEKE 200 (250)
T ss_pred CCCHHHheeeecceeeccccCC----CC--------------------CCCC-CC----CCCCCccchHHHHHHhcCCcC
Confidence 9999999999999999999993 31 1111 22 369999999999999999 8
Q ss_pred cCcc--chhhhccCcchHHHHhhhccChhHHHHHHHHHHHHHhcCCCC
Q 040171 252 GVLQ--IDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVL 297 (329)
Q Consensus 252 gll~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 297 (329)
|+|. ||++|+.|++|+.+|+.||.|++.|+++|++||+||++||+-
T Consensus 201 gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 201 GLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred CCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9865 999999999999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.9e-64 Score=484.18 Aligned_cols=241 Identities=27% Similarity=0.335 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHhhCC---CcHHHHHHHHhhcccCC-----------CCCCcceeccCCCCCCCCCCCCCCCCCchhHH
Q 040171 34 AESIIFNVVQRRFNTDR---SITGALLRMHFHDCFSG-----------NVCDASILIDSTIRSQPEKDSGSNLTVRGYEI 99 (329)
Q Consensus 34 ~e~iV~~~v~~~~~~~~---~~a~~llRL~FHDcfv~-----------~GcDgSill~~~~~~~~E~~~~~N~~L~g~~~ 99 (329)
+|..|++.+++.+..+. ..++.+|||+||||+++ +||||||||+++ .|+++++|.+|+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 57889999999998554 46777999999999972 399999999743 699999999998 99
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHhHHHHHHH-hCCCCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCcc
Q 040171 100 IDEIKNAVEQKCPSTVSCADIIALATRDAVAL-AGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEKGFNTT 178 (329)
Q Consensus 100 Id~iK~~le~~cp~~VScADilalAar~av~~-~GGP~~~v~~GR~D~~~s~~~~~~LP~p~~~~~~l~~~F~~~Gls~~ 178 (329)
|+.||..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++.+.. +||.|+.++++|++.|+++||+.+
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g-~LP~p~~sv~~l~~~F~~~Gf~~~ 165 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDG-LVPEPFDSVDKILARFADAGFSPD 165 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCccc-CCCCCCCCHHHHHHHHHHcCCCHH
Confidence 999999999998 99999999999999995 5999999999999999987665 799999999999999999999999
Q ss_pred cceeecccceeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhh-hccc-----
Q 040171 179 ETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTL-FKRG----- 252 (329)
Q Consensus 179 dlVaLsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~-~~~g----- 252 (329)
|||+|+||||||++|. .||+++ .+++| .||.+|||+||++++ .+++
T Consensus 166 E~VaLsGAHTiG~a~~-------~Dps~~--------------------g~p~D-~TP~~FDn~Yf~~ll~~~~~~~g~~ 217 (328)
T cd00692 166 ELVALLAAHSVAAQDF-------VDPSIA--------------------GTPFD-STPGVFDTQFFIETLLKGTAFPGSG 217 (328)
T ss_pred HHhhhcccccccccCC-------CCCCCC--------------------CCCCC-CCcchhcHHHHHHHHHcCCCCCCcc
Confidence 9999999999999982 366663 13467 699999999999987 5555
Q ss_pred --------------CccchhhhccCcchHHHHhhhccChhHHHHHHHHHHHHHhcCCCCCCCCcccccccccccCCCC
Q 040171 253 --------------VLQIDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGSLQVLTDGQGEIRQNCRAFNRDNN 316 (329)
Q Consensus 253 --------------ll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n~~~~ 316 (329)
+|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||. ...+.+|+.|+|...
T Consensus 218 ~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~~~ 291 (328)
T cd00692 218 GNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVIPPPK 291 (328)
T ss_pred ccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccCCCCC
Confidence 499999999999999999999999999999999999999999985 457889999996654
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.8e-63 Score=462.57 Aligned_cols=219 Identities=25% Similarity=0.356 Sum_probs=197.3
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHhhcccCC------CCCCcceeccCCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHhh
Q 040171 37 IIFNVVQRRFNTDRSITGALLRMHFHDCFSG------NVCDASILIDSTIRSQPEKDSGSNLTVR-GYEIIDEIKNAVEQ 109 (329)
Q Consensus 37 iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~------~GcDgSill~~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~le~ 109 (329)
-++..+.+.+ .+...+|.+|||+||||.++ +||||||++. .|+++++|.||+ ++++|+.||+++
T Consensus 19 ~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~-- 89 (251)
T PLN02879 19 RCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF-- 89 (251)
T ss_pred HHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc--
Confidence 3566677765 56799999999999999876 3999999763 699999999997 999999999998
Q ss_pred hCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeeccccee
Q 040171 110 KCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEKGFNTTETVVILGAHTV 189 (329)
Q Consensus 110 ~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTi 189 (329)
++|||||||+||||+||+.+|||.|+|++||+|+.++.+.. +||+|+.++++|++.|+++||+++|||||||||||
T Consensus 90 ---~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTi 165 (251)
T PLN02879 90 ---PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEG-RLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTL 165 (251)
T ss_pred ---CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccc-CCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccc
Confidence 58999999999999999999999999999999999987654 89999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhc--ccC--ccchhhhccCcc
Q 040171 190 GVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFK--RGV--LQIDQALALDAS 265 (329)
Q Consensus 190 G~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~--~gl--l~SD~~L~~d~~ 265 (329)
|++||. | .+..+ .| | .||.+|||+||++|+.+ +|+ |+||++|+.|++
T Consensus 166 G~ah~~----r--------------------~g~~g-~~---d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~ 216 (251)
T PLN02879 166 GRCHKE----R--------------------SGFEG-AW---T-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPL 216 (251)
T ss_pred cccccc----c--------------------ccCCC-CC---C-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCc
Confidence 999995 2 12222 23 3 69999999999999999 888 689999999999
Q ss_pred hHHHHhhhccChhHHHHHHHHHHHHHhcCCCC
Q 040171 266 THDIVAHFANDEDDFQLSFANVMVKLGSLQVL 297 (329)
Q Consensus 266 t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 297 (329)
|+++|++||.||++|+++|+.||+||++||+.
T Consensus 217 t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 217 FLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=7.4e-59 Score=434.69 Aligned_cols=222 Identities=31% Similarity=0.440 Sum_probs=203.9
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHhhcccCC-------CCCCcceeccCCCCCCCCCCCCCCCCC-chhHHHHHHHHHHh
Q 040171 37 IIFNVVQRRFNTDRSITGALLRMHFHDCFSG-------NVCDASILIDSTIRSQPEKDSGSNLTV-RGYEIIDEIKNAVE 108 (329)
Q Consensus 37 iV~~~v~~~~~~~~~~a~~llRL~FHDcfv~-------~GcDgSill~~~~~~~~E~~~~~N~~L-~g~~~Id~iK~~le 108 (329)
.|++.|++.+.+++.+++++|||+||||+++ +||||||+++ +|+++++|.+| +++++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 4889999999999999999999999999996 3999999997 39999999997 89999999999999
Q ss_pred hhCCCCCCHHHHHHHhHHHHHHHh--CCCCcccCCCCCCCCCCC---CCCC-CCCCCCCCHHHHHHHHHHcCCCccccee
Q 040171 109 QKCPSTVSCADIIALATRDAVALA--GGLNYSLPTGRLDGLRSN---ADEV-NLPGTSLSVPNVLQMFAEKGFNTTETVV 182 (329)
Q Consensus 109 ~~cp~~VScADilalAar~av~~~--GGP~~~v~~GR~D~~~s~---~~~~-~LP~p~~~~~~l~~~F~~~Gls~~dlVa 182 (329)
. |++|||||||+||+++||+.+ |||.|+|++||+|+..+. +... ++|.|..+++++++.|.++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999653 2222 6888888999999999999999999999
Q ss_pred ec-cccee-ccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhcc---------
Q 040171 183 IL-GAHTV-GVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKR--------- 251 (329)
Q Consensus 183 Ls-GaHTi-G~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~--------- 251 (329)
|+ ||||| |++||..+..|+ |+ +|+.||.+|||+||++|+.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~----------------~~-----------~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~ 206 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG----------------SG-----------LWTSTPFTFDNAYFKNLLDMNWEWRVGSPD 206 (255)
T ss_pred hccCCeeccCcccCCCCCccc----------------CC-----------CCCCCCCccchHHHHHHhcCCcccccCCcc
Confidence 99 99999 999999876652 21 235799999999999999998
Q ss_pred -------cCccchhhhccCcchHHHHhhhccChhHHHHHHHHHHHHHhc
Q 040171 252 -------GVLQIDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGS 293 (329)
Q Consensus 252 -------gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 293 (329)
++|+||+.|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 207 ~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 207 PDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.4e-56 Score=437.77 Aligned_cols=257 Identities=21% Similarity=0.289 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHhhC--------CCcHHHHHHHHhhcccCC------CCCC-cceeccCCCCCCCCCCCCCCCCC-chhHH
Q 040171 36 SIIFNVVQRRFNTD--------RSITGALLRMHFHDCFSG------NVCD-ASILIDSTIRSQPEKDSGSNLTV-RGYEI 99 (329)
Q Consensus 36 ~iV~~~v~~~~~~~--------~~~a~~llRL~FHDcfv~------~GcD-gSill~~~~~~~~E~~~~~N~~L-~g~~~ 99 (329)
+.|++.+++.+... ...+|.+|||+|||+.++ +|++ |+|.++ +|++++.|.+| ++..+
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~~ 118 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARRL 118 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHHH
Confidence 67889999888764 379999999999999997 3886 788765 79999999999 58999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCC-----------------------------
Q 040171 100 IDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSN----------------------------- 150 (329)
Q Consensus 100 Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~----------------------------- 150 (329)
++.||+++. ..||+||+|+||+..||+.+|||.|++.+||.|.....
T Consensus 119 L~pik~k~~----~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a 194 (409)
T cd00649 119 LWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAA 194 (409)
T ss_pred HHHHHHHcC----CCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhh
Confidence 999999883 47999999999999999999999999999999997543
Q ss_pred ---------CCCC-CCCCCCCCHHHHHHHHHHcCCCcccceee-cccceeccccccccCCcC-CCCCCCHHHHHHHH--h
Q 040171 151 ---------ADEV-NLPGTSLSVPNVLQMFAEKGFNTTETVVI-LGAHTVGVVHCSFFQDRL-ADSDMDPAFAQELS--K 216 (329)
Q Consensus 151 ---------~~~~-~LP~p~~~~~~l~~~F~~~Gls~~dlVaL-sGaHTiG~~hc~~f~~Rl-~dp~~d~~~~~~L~--~ 216 (329)
+.+. .||+|..++.+|++.|.+||||++||||| +||||||++||..|.+|| +||.+++.|++.|+ .
T Consensus 195 ~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~ 274 (409)
T cd00649 195 VQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKN 274 (409)
T ss_pred hhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccc
Confidence 2223 69999999999999999999999999999 599999999999999999 89999999999995 8
Q ss_pred hCCCCCCCCCCCCCCC---CCCCcccChHHHHHhhh------------------------------------cccCccch
Q 040171 217 ACEASSGSDDPMTNLD---RGTPTSLDSQYYNQTLF------------------------------------KRGVLQID 257 (329)
Q Consensus 217 ~Cp~~~~~~~~~~~lD---~~tp~~FDN~Yy~~l~~------------------------------------~~gll~SD 257 (329)
.||...........+| +.||++|||+||++|++ ++++|+||
T Consensus 275 ~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD 354 (409)
T cd00649 275 SYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTD 354 (409)
T ss_pred cCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhh
Confidence 9996422211344577 58999999999999998 56899999
Q ss_pred hhhccCcchHHHHhhhccChhHHHHHHHHHHHHH--hcCCCCCCCCc
Q 040171 258 QALALDASTHDIVAHFANDEDDFQLSFANVMVKL--GSLQVLTDGQG 302 (329)
Q Consensus 258 ~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 302 (329)
++|+.|++|+++|++||+|++.||++|++||+|| +.+|+++-.-|
T Consensus 355 ~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 355 LALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred HhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 9999999999999999999999999999999999 68898876544
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.1e-53 Score=440.98 Aligned_cols=253 Identities=23% Similarity=0.291 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHhhC--------CCcHHHHHHHHhhcccCC------CCC-CcceeccCCCCCCCCCCCCCCCCC-chhHH
Q 040171 36 SIIFNVVQRRFNTD--------RSITGALLRMHFHDCFSG------NVC-DASILIDSTIRSQPEKDSGSNLTV-RGYEI 99 (329)
Q Consensus 36 ~iV~~~v~~~~~~~--------~~~a~~llRL~FHDcfv~------~Gc-DgSill~~~~~~~~E~~~~~N~~L-~g~~~ 99 (329)
+.|++.+++.+... ...+|-+|||+||++.++ +|| .|+|.+. +|++++.|.+| +++.+
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~~Ldka~~l 128 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNVNLDKARRL 128 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhhhHHHHHHH
Confidence 56899999988764 379999999999999997 377 4778665 79999999999 58888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCC-----------------------------
Q 040171 100 IDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSN----------------------------- 150 (329)
Q Consensus 100 Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~----------------------------- 150 (329)
++.||+ +||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 129 L~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~ 204 (716)
T TIGR00198 129 LWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAAT 204 (716)
T ss_pred HHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhh
Confidence 988887 47889999999999999999999999999999999994321
Q ss_pred --------CCCC-CCCCCCCCHHHHHHHHHHcCCCcccceeec-ccceeccccccccCCcC-CCCCCCHHHHHHHHhhCC
Q 040171 151 --------ADEV-NLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQDRL-ADSDMDPAFAQELSKACE 219 (329)
Q Consensus 151 --------~~~~-~LP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~~hc~~f~~Rl-~dp~~d~~~~~~L~~~Cp 219 (329)
+.+. ++|+|..++++|++.|.+||||++|||||+ ||||||++||.+|.+|| +||++++.|++.|+.+||
T Consensus 205 ~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~ 284 (716)
T TIGR00198 205 EMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQ 284 (716)
T ss_pred hccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCC
Confidence 2233 699999999999999999999999999996 99999999999999999 999999999999999998
Q ss_pred CC-CCCCC-CCCCCC---CCCCcccChHHHHHhhhc----------------------------------ccCccchhhh
Q 040171 220 AS-SGSDD-PMTNLD---RGTPTSLDSQYYNQTLFK----------------------------------RGVLQIDQAL 260 (329)
Q Consensus 220 ~~-~~~~~-~~~~lD---~~tp~~FDN~Yy~~l~~~----------------------------------~gll~SD~~L 260 (329)
.. +...+ ..+.+| +.||.+|||+||++|+.+ .++|+||++|
T Consensus 285 ~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL 364 (716)
T TIGR00198 285 YGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLAL 364 (716)
T ss_pred CCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHHh
Confidence 53 21111 235566 689999999999999975 6899999999
Q ss_pred ccCcchHHHHhhhccChhHHHHHHHHHHHHHh--cCCCCC
Q 040171 261 ALDASTHDIVAHFANDEDDFQLSFANVMVKLG--SLQVLT 298 (329)
Q Consensus 261 ~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~t 298 (329)
..|++++++|+.||.|++.|+++|++||+||+ .+|++.
T Consensus 365 ~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 365 RFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred ccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 99999999999999999999999999999999 466543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.4e-50 Score=412.17 Aligned_cols=253 Identities=20% Similarity=0.283 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHhhC--------CCcHHHHHHHHhhcccCC------CCCC-cceeccCCCCCCCCCCCCCCCCC-chhHH
Q 040171 36 SIIFNVVQRRFNTD--------RSITGALLRMHFHDCFSG------NVCD-ASILIDSTIRSQPEKDSGSNLTV-RGYEI 99 (329)
Q Consensus 36 ~iV~~~v~~~~~~~--------~~~a~~llRL~FHDcfv~------~GcD-gSill~~~~~~~~E~~~~~N~~L-~g~~~ 99 (329)
+.|++.+++.+... ...+|-+|||+||++.++ +||+ |+|.+. +|++++.|.+| ++..+
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~N~gL~ka~~~ 130 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPDNVNLDKARRL 130 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchhhhhHHHHHHH
Confidence 56899999888754 379999999999999997 3875 678664 79999999999 58999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCC----------------------------
Q 040171 100 IDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNA---------------------------- 151 (329)
Q Consensus 100 Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~---------------------------- 151 (329)
++.||+++. ..||+||+|+||+..|||.+|||.|++.+||.|......
T Consensus 131 L~pik~ky~----~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~ 206 (726)
T PRK15061 131 LWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLA 206 (726)
T ss_pred HHHHHHHhC----CCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchh
Confidence 999999883 579999999999999999999999999999999864322
Q ss_pred -----------CCC-CCCCCCCCHHHHHHHHHHcCCCcccceeec-ccceeccccccccCCcC-CCCCCCHHHHHHHH--
Q 040171 152 -----------DEV-NLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQDRL-ADSDMDPAFAQELS-- 215 (329)
Q Consensus 152 -----------~~~-~LP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~~hc~~f~~Rl-~dp~~d~~~~~~L~-- 215 (329)
++. .+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+|| +||.+++.|++.|.
T Consensus 207 a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~ 286 (726)
T PRK15061 207 AVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWK 286 (726)
T ss_pred hhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhcccc
Confidence 112 389999999999999999999999999995 99999999999999999 99999999999985
Q ss_pred hhCCCCC-CCCCCCCCCC---CCCCcccChHHHHHhhhc------------------------------------ccCcc
Q 040171 216 KACEASS-GSDDPMTNLD---RGTPTSLDSQYYNQTLFK------------------------------------RGVLQ 255 (329)
Q Consensus 216 ~~Cp~~~-~~~~~~~~lD---~~tp~~FDN~Yy~~l~~~------------------------------------~gll~ 255 (329)
+.||... .+. ....+| +.||++|||+||++|+.+ .++|+
T Consensus 287 ~~c~~g~g~dt-~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLt 365 (726)
T PRK15061 287 NSYGSGKGADT-ITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLT 365 (726)
T ss_pred ccCCCCCCCCC-ccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCccccc
Confidence 9999632 222 234566 689999999999999985 58999
Q ss_pred chhhhccCcchHHHHhhhccChhHHHHHHHHHHHHHhc--CCCCCC
Q 040171 256 IDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGS--LQVLTD 299 (329)
Q Consensus 256 SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~tg 299 (329)
||++|..|++++++|++||+|+++|+++|++||.||++ +|+++-
T Consensus 366 SD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 366 TDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred ccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 99999999999999999999999999999999999955 666543
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.9e-50 Score=375.24 Aligned_cols=232 Identities=22% Similarity=0.317 Sum_probs=186.3
Q ss_pred CCccccccCCccHHHHHHHHHHHHHhhCCCcHHHHHHHHhhccc-------CCCCCCcceeccCCCCCCCCCC-CCCCCC
Q 040171 22 LTPNFYSSSCPEAESIIFNVVQRRFNTDRSITGALLRMHFHDCF-------SGNVCDASILIDSTIRSQPEKD-SGSNLT 93 (329)
Q Consensus 22 L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDcf-------v~~GcDgSill~~~~~~~~E~~-~~~N~~ 93 (329)
++.+||...- .+.|...-..+...+++++++||||+||||| ++ ||||||+++.+ .+|+. .+.|.+
T Consensus 14 ~~~g~~~~~f---~~~v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~g-GcDgSIlle~~---~~En~G~~~n~~ 86 (264)
T cd08201 14 LQSGYSARGF---VAGVTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTG-GLDASIQYELD---RPENIGSGFNTT 86 (264)
T ss_pred hcccceeccc---ccccccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCC-CCCcceeecCC---ChhhccCchhhc
Confidence 3455655321 2233444444556889999999999999999 66 99999999842 36777 566778
Q ss_pred CchhHHHHHHHHHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHc
Q 040171 94 VRGYEIIDEIKNAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNADEVNLPGTSLSVPNVLQMFAEK 173 (329)
Q Consensus 94 L~g~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~LP~p~~~~~~l~~~F~~~ 173 (329)
|++|+.|+.+ +||||||||||||+||+.+|||.|+|++||+|++++.+. .||.|+.++++|++.|+++
T Consensus 87 l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~--glP~P~~~v~~l~~~Fa~~ 154 (264)
T cd08201 87 LNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA--GVPEPQTDLGTTTESFRRQ 154 (264)
T ss_pred cccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc--cCCCCccCHHHHHHHHHHc
Confidence 8888887543 699999999999999999999999999999999998876 5999999999999999999
Q ss_pred CCCcccceeecc-cceeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhhccc
Q 040171 174 GFNTTETVVILG-AHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRG 252 (329)
Q Consensus 174 Gls~~dlVaLsG-aHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~g 252 (329)
||+++|||+||| |||||++||..|.+++..++. .+ ...++| .||.+|||+||.+++.|..
T Consensus 155 Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~-----------------~~-~~~p~d-stp~~FDn~~f~E~l~g~~ 215 (264)
T cd08201 155 GFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSV-----------------PD-TVLQFF-DTTIQFDNKVVTEYLSGTT 215 (264)
T ss_pred CCChHHHheeecCCeeeeecccccchhhcCCccc-----------------cC-CCCCCC-CCccccchHHHHHHhcCCC
Confidence 999999999995 999999999998776411111 00 123566 7999999999999998752
Q ss_pred ----------CccchhhhccCcchHHHHhhhccChhHHHHHHHHHHHHHhc
Q 040171 253 ----------VLQIDQALALDASTHDIVAHFANDEDDFQLSFANVMVKLGS 293 (329)
Q Consensus 253 ----------ll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 293 (329)
.+.||..++....- ..++..| +++.|.+.++..+.||.+
T Consensus 216 ~~~L~~~~~~~~~sd~r~f~~d~n-~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 216 NNPLVVGPNNTTNSDLRIFSSDGN-VTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCceeecCCCCccchhhheecCcc-HHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 35799999876543 4556677 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=9.7e-41 Score=314.94 Aligned_cols=221 Identities=16% Similarity=0.231 Sum_probs=183.9
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHhhcccCC------CCCCcc-eeccCCCCCCCCCCCCCCCC--C-chhHHHHHHHHHH
Q 040171 38 IFNVVQRRFNTDRSITGALLRMHFHDCFSG------NVCDAS-ILIDSTIRSQPEKDSGSNLT--V-RGYEIIDEIKNAV 107 (329)
Q Consensus 38 V~~~v~~~~~~~~~~a~~llRL~FHDcfv~------~GcDgS-ill~~~~~~~~E~~~~~N~~--L-~g~~~Id~iK~~l 107 (329)
--+.+++.+......++.||||+||++.++ +|++|+ |.|. +|++++.|.+ | +.+.+++.||+++
T Consensus 15 di~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~ 88 (297)
T cd08200 15 DIAALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEF 88 (297)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHh
Confidence 346788888888889999999999999997 499988 7664 7999999998 8 5899999999998
Q ss_pred hhhC-C-CCCCHHHHHHHhHHHHHHHhCC-----CCcccCCCCCCCCCCCCCCC----CCCCCCC------------CHH
Q 040171 108 EQKC-P-STVSCADIIALATRDAVALAGG-----LNYSLPTGRLDGLRSNADEV----NLPGTSL------------SVP 164 (329)
Q Consensus 108 e~~c-p-~~VScADilalAar~av~~~GG-----P~~~v~~GR~D~~~s~~~~~----~LP~p~~------------~~~ 164 (329)
...- + ..||+||+|+||+..|||.+|| |.|++.+||.|......... .+|.++. ..+
T Consensus 89 ~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~ 168 (297)
T cd08200 89 NESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEE 168 (297)
T ss_pred cccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHH
Confidence 5321 2 2699999999999999999999 99999999999987543211 3454432 347
Q ss_pred HHHHHHHHcCCCcccceeecccc-eeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHH
Q 040171 165 NVLQMFAEKGFNTTETVVILGAH-TVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQY 243 (329)
Q Consensus 165 ~l~~~F~~~Gls~~dlVaLsGaH-TiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Y 243 (329)
.|++.|.++|||++|||||+||| ++|..|..++ .+ +| +.+|.+|||.|
T Consensus 169 ~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~--------------------------~G-~w----T~~p~~f~N~f 217 (297)
T cd08200 169 MLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK--------------------------HG-VF----TDRPGVLTNDF 217 (297)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCCC--------------------------CC-CC----cCCCCccccHH
Confidence 89999999999999999999997 7998884221 12 45 57899999999
Q ss_pred HHHhhhcc--------------------c-----CccchhhhccCcchHHHHhhhccC--hhHHHHHHHHHHHHHhcCC
Q 040171 244 YNQTLFKR--------------------G-----VLQIDQALALDASTHDIVAHFAND--EDDFQLSFANVMVKLGSLQ 295 (329)
Q Consensus 244 y~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lg 295 (329)
|++|+... | .+.+|.+|..|++.|++|+.||+| ++.||+||++||.||+++.
T Consensus 218 F~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 218 FVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 99999520 1 267899999999999999999998 9999999999999999874
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.3e-35 Score=299.62 Aligned_cols=221 Identities=17% Similarity=0.240 Sum_probs=184.2
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHhhcccCC------CCCCcc-eeccCCCCCCCCCCCCCCC--CC-chhHHHHHHHHHHh
Q 040171 39 FNVVQRRFNTDRSITGALLRMHFHDCFSG------NVCDAS-ILIDSTIRSQPEKDSGSNL--TV-RGYEIIDEIKNAVE 108 (329)
Q Consensus 39 ~~~v~~~~~~~~~~a~~llRL~FHDcfv~------~GcDgS-ill~~~~~~~~E~~~~~N~--~L-~g~~~Id~iK~~le 108 (329)
.+.+++.+....-..+.|||++||++.++ +|++|+ |.|. +|++++.|. +| +.+.+++.||++++
T Consensus 441 i~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~ 514 (726)
T PRK15061 441 IAALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFN 514 (726)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHh
Confidence 36778888888889999999999999997 399988 8775 799999999 88 58999999999996
Q ss_pred hhCC--CCCCHHHHHHHhHHHHHHHh---CC--CCcccCCCCCCCCCCCCCCC----CCCCCC------------CCHHH
Q 040171 109 QKCP--STVSCADIIALATRDAVALA---GG--LNYSLPTGRLDGLRSNADEV----NLPGTS------------LSVPN 165 (329)
Q Consensus 109 ~~cp--~~VScADilalAar~av~~~---GG--P~~~v~~GR~D~~~s~~~~~----~LP~p~------------~~~~~ 165 (329)
..-. ..||.||+|+||+..|||.+ || |.|++.+||.|......... .+|.++ ...+.
T Consensus 515 ~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 515 AAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred hccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHH
Confidence 5322 26999999999999999999 68 99999999999987543321 456543 13478
Q ss_pred HHHHHHHcCCCcccceeecccc-eeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHH
Q 040171 166 VLQMFAEKGFNTTETVVILGAH-TVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYY 244 (329)
Q Consensus 166 l~~~F~~~Gls~~dlVaLsGaH-TiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy 244 (329)
|++.|.++|||++|||||+||| ++|..|-.++ .+ +| +.+|.+|||.||
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~--------------------------~G-~~----T~~p~~fsNdfF 643 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK--------------------------HG-VF----TDRPGVLTNDFF 643 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCCC--------------------------CC-CC----cCCCCccccHHH
Confidence 9999999999999999999997 7898883221 12 44 568999999999
Q ss_pred HHhhhcc--------------------c---C--ccchhhhccCcchHHHHhhhccC--hhHHHHHHHHHHHHHhcCCC
Q 040171 245 NQTLFKR--------------------G---V--LQIDQALALDASTHDIVAHFAND--EDDFQLSFANVMVKLGSLQV 296 (329)
Q Consensus 245 ~~l~~~~--------------------g---l--l~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lgv 296 (329)
++|+... | + +.+|.+|..|++.|++|+.||+| +++||+||++||.|+.+++-
T Consensus 644 vnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 644 VNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred HHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 9999521 1 1 47899999999999999999999 99999999999999999874
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1e-34 Score=300.34 Aligned_cols=216 Identities=18% Similarity=0.262 Sum_probs=176.6
Q ss_pred HHHHHhhCCCcHHHHHHHHhhcccCC------CCCCcc-eeccCCCCCCCCCCCCCC--CCC-chhHHHHHHHHHHhhhC
Q 040171 42 VQRRFNTDRSITGALLRMHFHDCFSG------NVCDAS-ILIDSTIRSQPEKDSGSN--LTV-RGYEIIDEIKNAVEQKC 111 (329)
Q Consensus 42 v~~~~~~~~~~a~~llRL~FHDcfv~------~GcDgS-ill~~~~~~~~E~~~~~N--~~L-~g~~~Id~iK~~le~~c 111 (329)
+++.+....-..+.|||++||++.++ +|++|+ |.|. +|++++.| .+| +.+.+++.||+++..
T Consensus 437 lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~-- 508 (716)
T TIGR00198 437 LKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKIQAEFAK-- 508 (716)
T ss_pred HHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHHHHHcCC--
Confidence 34445666778899999999999997 399998 7765 79999999 799 589999999998852
Q ss_pred CCCCCHHHHHHHhHHHHHHHh---CCC--CcccCCCCCCCCCCCCCCC-C---CCCC------------CCCHHHHHHHH
Q 040171 112 PSTVSCADIIALATRDAVALA---GGL--NYSLPTGRLDGLRSNADEV-N---LPGT------------SLSVPNVLQMF 170 (329)
Q Consensus 112 p~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~~~~-~---LP~p------------~~~~~~l~~~F 170 (329)
..||.||+|+||+..|||.+ ||| .+++.+||.|......... . -|.+ ......|++.|
T Consensus 509 -~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a 587 (716)
T TIGR00198 509 -GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKA 587 (716)
T ss_pred -CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHH
Confidence 27999999999999999999 898 5899999999987643211 1 1211 22356789999
Q ss_pred HHcCCCcccceeeccc-ceeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHhhh
Q 040171 171 AEKGFNTTETVVILGA-HTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQTLF 249 (329)
Q Consensus 171 ~~~Gls~~dlVaLsGa-HTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~ 249 (329)
.++|||++|||||+|| |++|+.|..++ .+ +| +.+|.+|||.||++|+.
T Consensus 588 ~~lglt~~EmvaL~Gg~r~lG~~~~~s~--------------------------~G-~~----T~~p~~f~NdfF~~LLd 636 (716)
T TIGR00198 588 QLLTLTAPEMTVLIGGMRVLGANHGGSK--------------------------HG-VF----TDRVGVLSNDFFVNLLD 636 (716)
T ss_pred HhCCCChHHHHheecchhhccccCCCCC--------------------------CC-CC----cCCCCccccHHHHHHhc
Confidence 9999999999999999 59999985321 12 44 56899999999999986
Q ss_pred cc--------------------c---Cc--cchhhhccCcchHHHHhhhccCh--hHHHHHHHHHHHHHhcCCCC
Q 040171 250 KR--------------------G---VL--QIDQALALDASTHDIVAHFANDE--DDFQLSFANVMVKLGSLQVL 297 (329)
Q Consensus 250 ~~--------------------g---ll--~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~Am~Km~~lgv~ 297 (329)
.. | ++ .+|.+|..|++.|++|+.||+|+ ++||+||++||.|+.+++-.
T Consensus 637 ~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldrf 711 (716)
T TIGR00198 637 MAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDRF 711 (716)
T ss_pred CCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCCc
Confidence 21 1 22 67999999999999999999997 89999999999999998753
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=257.73 Aligned_cols=253 Identities=20% Similarity=0.266 Sum_probs=198.9
Q ss_pred HHHHHHHHHHhhCC--------CcHHHHHHHHhhcccCCC---CCCcceeccCCCCCCCCCCCCCCCCC-chhHHHHHHH
Q 040171 37 IIFNVVQRRFNTDR--------SITGALLRMHFHDCFSGN---VCDASILIDSTIRSQPEKDSGSNLTV-RGYEIIDEIK 104 (329)
Q Consensus 37 iV~~~v~~~~~~~~--------~~a~~llRL~FHDcfv~~---GcDgSill~~~~~~~~E~~~~~N~~L-~g~~~Id~iK 104 (329)
.|+..+...+.... ..+|-+|||+||-+.++. |-.|+- .+..++.++.++|.|.+| +++.++..||
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~--~G~qRFaPlnSWPDN~nLDKarRLLWPIK 148 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAG--GGQQRFAPLNSWPDNANLDKARRLLWPIK 148 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCC--CCceecccccCCCcccchHHHHHHhhhHh
Confidence 35555555554332 489999999999999862 332222 233457789999999999 6999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHhHHHHHHHhCCCCcccCCCCCCCCCCCC---------------------------------
Q 040171 105 NAVEQKCPSTVSCADIIALATRDAVALAGGLNYSLPTGRLDGLRSNA--------------------------------- 151 (329)
Q Consensus 105 ~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~--------------------------------- 151 (329)
+++ +..+|+||+|+|++..|++.+|++.+.+..||.|-..+..
T Consensus 149 kKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGL 224 (730)
T COG0376 149 KKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGL 224 (730)
T ss_pred Hhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeee
Confidence 998 3689999999999999999999999999999999877654
Q ss_pred -----CCC-CCCCCCCCHHHHHHHHHHcCCCcccceeec-ccceeccccccccCCcC-CCCCCCHHHHHHH--HhhCCCC
Q 040171 152 -----DEV-NLPGTSLSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVHCSFFQDRL-ADSDMDPAFAQEL--SKACEAS 221 (329)
Q Consensus 152 -----~~~-~LP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~~hc~~f~~Rl-~dp~~d~~~~~~L--~~~Cp~~ 221 (329)
.+. ..|+|..+..++++.|++|++|++|.|||+ ||||+|.+|...-..-+ ++|.-.+--.+.| +..|-..
T Consensus 225 IYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G 304 (730)
T COG0376 225 IYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSG 304 (730)
T ss_pred EEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCC
Confidence 333 589999999999999999999999999999 69999999976633334 6776555555555 3344321
Q ss_pred -CCCC--CCCCCCCCCCCcccChHHHHHhhhcc-----------------------------------cCccchhhhccC
Q 040171 222 -SGSD--DPMTNLDRGTPTSLDSQYYNQTLFKR-----------------------------------GVLQIDQALALD 263 (329)
Q Consensus 222 -~~~~--~~~~~lD~~tp~~FDN~Yy~~l~~~~-----------------------------------gll~SD~~L~~d 263 (329)
|.+. +....-.+.||++|||+||.+|+... .||++|.+|.-|
T Consensus 305 ~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~D 384 (730)
T COG0376 305 KGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFD 384 (730)
T ss_pred cCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcC
Confidence 1110 01111125799999999999998531 379999999999
Q ss_pred cchHHHHhhhccChhHHHHHHHHHHHHHhcCC
Q 040171 264 ASTHDIVAHFANDEDDFQLSFANVMVKLGSLQ 295 (329)
Q Consensus 264 ~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 295 (329)
|..++|.++|.+|++.|.+.|+.||.||.+-+
T Consensus 385 P~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 385 PEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred hHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.51 E-value=2.5e-13 Score=136.03 Aligned_cols=216 Identities=19% Similarity=0.279 Sum_probs=162.2
Q ss_pred HHHHHHHhhCCCcHHHHHHHHhhcccCCC------CCCc-ceeccCCCCCCCCCCCCCCC--CC-chhHHHHHHHHHHhh
Q 040171 40 NVVQRRFNTDRSITGALLRMHFHDCFSGN------VCDA-SILIDSTIRSQPEKDSGSNL--TV-RGYEIIDEIKNAVEQ 109 (329)
Q Consensus 40 ~~v~~~~~~~~~~a~~llRL~FHDcfv~~------GcDg-Sill~~~~~~~~E~~~~~N~--~L-~g~~~Id~iK~~le~ 109 (329)
..++..+....-....|+-.+|..+.++. |.+| -|.|. +.++++.|. .| +-+.+++.|++..+
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 46778888888889999999999998753 6665 46675 689999996 45 46888999988887
Q ss_pred hCCCCCCHHHHHHHhHHHHHHHh---CCCC--cccCCCCCCCCCCCCCCC---CC-CCC------------CCCHHHHHH
Q 040171 110 KCPSTVSCADIIALATRDAVALA---GGLN--YSLPTGRLDGLRSNADEV---NL-PGT------------SLSVPNVLQ 168 (329)
Q Consensus 110 ~cp~~VScADilalAar~av~~~---GGP~--~~v~~GR~D~~~s~~~~~---~L-P~p------------~~~~~~l~~ 168 (329)
..||.||+|+|++..+|+.+ +|-. +|+.+||.|+........ .| |-. ...-.-|++
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvD 601 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVD 601 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHH
Confidence 47999999999999999885 6654 577899999987543221 11 221 122445788
Q ss_pred HHHHcCCCcccceeecccc-eeccccccccCCcCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcccChHHHHHh
Q 040171 169 MFAEKGFNTTETVVILGAH-TVGVVHCSFFQDRLADSDMDPAFAQELSKACEASSGSDDPMTNLDRGTPTSLDSQYYNQT 247 (329)
Q Consensus 169 ~F~~~Gls~~dlVaLsGaH-TiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~lD~~tp~~FDN~Yy~~l 247 (329)
.-+-.+||..||++|+||- -+|.-+. + .. ..|. +..|..+.|.||.||
T Consensus 602 kAqlL~LtapemtVLiGGlRvLg~n~g---------------------------~-s~-~GVf--T~~pg~LtndFFvnL 650 (730)
T COG0376 602 KAQLLTLTAPEMTVLIGGLRVLGANYG---------------------------G-SK-HGVF--TDRPGVLTNDFFVNL 650 (730)
T ss_pred HHHHhccCCccceEEEcceEeeccCCC---------------------------C-Cc-ccee--ccCcccccchhhhhh
Confidence 8889999999999999875 4443321 1 11 1222 357899999999999
Q ss_pred hhc----------ccCc---------------cchhhhccCcchHHHHhhhccC--hhHHHHHHHHHHHHHhcCCC
Q 040171 248 LFK----------RGVL---------------QIDQALALDASTHDIVAHFAND--EDDFQLSFANVMVKLGSLQV 296 (329)
Q Consensus 248 ~~~----------~gll---------------~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~lgv 296 (329)
+.. ++++ ..|..+-.+...|.+.+.||.| ++.|.+||+.||.|..++.-
T Consensus 651 lDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~DR 726 (730)
T COG0376 651 LDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLDR 726 (730)
T ss_pred hhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc
Confidence 863 1121 4677888889999999999975 79999999999999988753
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=74.65 E-value=13 Score=36.69 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=74.6
Q ss_pred CCHHHHHHHhHHHHH--HHhCCCCcccCCCCCCCCCCCCCCC-CCCC-C---CCCHHHHHHHHHHcCCCc----------
Q 040171 115 VSCADIIALATRDAV--ALAGGLNYSLPTGRLDGLRSNADEV-NLPG-T---SLSVPNVLQMFAEKGFNT---------- 177 (329)
Q Consensus 115 VScADilalAar~av--~~~GGP~~~v~~GR~D~~~s~~~~~-~LP~-p---~~~~~~l~~~F~~~Gls~---------- 177 (329)
|.|-=.+.|....|+ ..+|-..+..+.||-+.+.-.+... ..+. . -..+.++.++|++.|+..
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 240 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNT 240 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCH
Confidence 444333344444443 3347788999999986653322211 2221 1 235778888998888854
Q ss_pred ccceeecccceeccccccccCCcCCCCCCCHHHHHHHHhhC-CCCCC-CCCCCCCCCCCCCcccChHHHHHhhhcccCcc
Q 040171 178 TETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKAC-EASSG-SDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQ 255 (329)
Q Consensus 178 ~dlVaLsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~C-p~~~~-~~~~~~~lD~~tp~~FDN~Yy~~l~~~~gll~ 255 (329)
+|+..|.|+|.+ ++.|...++|...- ..-.. -.+....-....+..+|-..|+-.++..++
T Consensus 241 ~qi~~laG~D~l---------------Ti~p~ll~~L~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~fr~~~~~d~m-- 303 (333)
T PTZ00411 241 GEILELAGCDKL---------------TISPKLLEELANTEDGPVERKLDPEKLTEDTEKLPELTEKEFRWELNEDAM-- 303 (333)
T ss_pred HHHHHHHCCCEE---------------eCCHHHHHHHHhCCCcccCcccCcccccccccccCCCCHHHHHHHhCCCcc--
Confidence 344445555543 46777788886532 11000 000001111123456788888753332111
Q ss_pred chhhhccCcchHHHHhhhccChhHHHHHH
Q 040171 256 IDQALALDASTHDIVAHFANDEDDFQLSF 284 (329)
Q Consensus 256 SD~~L~~d~~t~~~V~~yA~d~~~F~~~F 284 (329)
.-.++..-++.|+.|+....+-.
T Consensus 304 ------a~ekl~~gir~F~~d~~~Le~~i 326 (333)
T PTZ00411 304 ------ATEKLAEGIRNFAKDLEKLENVI 326 (333)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234456677777766554433
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=68.93 E-value=5.6 Score=31.29 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcccccccccccCCC
Q 040171 279 DFQLSFANVMVKLGSLQVLTDGQGEIRQNCRAFNRDN 315 (329)
Q Consensus 279 ~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n~~~ 315 (329)
...+.|..||.||+.||. +-.-.-+||.|.|.-
T Consensus 2 ~m~~~F~~am~KlavLG~----d~~~LiDCSdVIP~p 34 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH----DRSDLIDCSDVIPVP 34 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-----GGGSEE-GGGS---
T ss_pred hHHHHHHHHHHHHHHhcC----ChhhcccchhhccCC
Confidence 356899999999999865 334456999998543
No 21
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=55.88 E-value=53 Score=32.27 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=71.8
Q ss_pred CCHHHHHHHhHHHHH--HHhCCCCcccCCCCCCCCCCCCCC-CCC----CCCCCCHHHHHHHHHHcCCCcccc-------
Q 040171 115 VSCADIIALATRDAV--ALAGGLNYSLPTGRLDGLRSNADE-VNL----PGTSLSVPNVLQMFAEKGFNTTET------- 180 (329)
Q Consensus 115 VScADilalAar~av--~~~GGP~~~v~~GR~D~~~s~~~~-~~L----P~p~~~~~~l~~~F~~~Gls~~dl------- 180 (329)
|+|-=.+.|....|+ ..+|-..+..+.||-|-......+ ... -++-..+.++.++|++.|+..+=|
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 228 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNK 228 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCH
Confidence 444333344444333 335888899999998764222111 011 123346788888999999865433
Q ss_pred ---eeecccceeccccccccCCcCCCCCCCHHHHHHHHhhCCCCC-C-CCCCCCCCCCCCCcccChHHHHHhhhcccCcc
Q 040171 181 ---VVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEASS-G-SDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQ 255 (329)
Q Consensus 181 ---VaLsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~~-~-~~~~~~~lD~~tp~~FDN~Yy~~l~~~~gll~ 255 (329)
.+|.|+|.+ ++.|...++|...-..-. . ..+.....+ ..|..+|...|+-.++..++
T Consensus 229 ~qv~~laG~d~~---------------Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-- 290 (317)
T TIGR00874 229 EEILALAGCDRL---------------TISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-- 290 (317)
T ss_pred HHHHHHHCCCeE---------------eCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc--
Confidence 223333322 577888888865322110 0 000000011 23456788888744332211
Q ss_pred chhhhccCcchHHHHhhhccChhHHH
Q 040171 256 IDQALALDASTHDIVAHFANDEDDFQ 281 (329)
Q Consensus 256 SD~~L~~d~~t~~~V~~yA~d~~~F~ 281 (329)
.-.++..-++.|+.|+....
T Consensus 291 ------a~ekl~~gir~F~~d~~~Le 310 (317)
T TIGR00874 291 ------ATEKLAEGIRKFAADQEKLE 310 (317)
T ss_pred ------hHHHHHHHHHHHHHHHHHHH
Confidence 01234556666776665544
No 22
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=54.87 E-value=36 Score=33.36 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=38.1
Q ss_pred CCCHHHHHHHhHHHHHH--HhCCCCcccCCCCCCCCCCCCCCC-CCCC----CCCCHHHHHHHHHHcCCCcc
Q 040171 114 TVSCADIIALATRDAVA--LAGGLNYSLPTGRLDGLRSNADEV-NLPG----TSLSVPNVLQMFAEKGFNTT 178 (329)
Q Consensus 114 ~VScADilalAar~av~--~~GGP~~~v~~GR~D~~~s~~~~~-~LP~----p~~~~~~l~~~F~~~Gls~~ 178 (329)
.|+|-=-+.|....|+. .+|-..+..+.||-|-..-...+. ..+. +-..+.++.++|++.|+..+
T Consensus 148 GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~ 219 (313)
T cd00957 148 GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTK 219 (313)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcE
Confidence 45554444555554443 347778899999988653221110 1111 22358888889999998754
No 23
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=53.81 E-value=74 Score=32.16 Aligned_cols=88 Identities=20% Similarity=0.355 Sum_probs=51.9
Q ss_pred CCCHHHHHHHhHHHHH--HHhCCCCcccCCCCCCCCCCCCCCC-CCCCCC----CCHHHHHHHHHHcCCCcc--------
Q 040171 114 TVSCADIIALATRDAV--ALAGGLNYSLPTGRLDGLRSNADEV-NLPGTS----LSVPNVLQMFAEKGFNTT-------- 178 (329)
Q Consensus 114 ~VScADilalAar~av--~~~GGP~~~v~~GR~D~~~s~~~~~-~LP~p~----~~~~~l~~~F~~~Gls~~-------- 178 (329)
.|.|-=.+.+....|+ ..+|-..+..+.||.|.......+. .+|... ..+.++.++|++.|+..+
T Consensus 154 GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn 233 (391)
T PRK12309 154 GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRN 233 (391)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCC
Confidence 3444444445444444 3357788999999988754322221 244332 247888888988887543
Q ss_pred --cceeecccceeccccccccCCcCCCCCCCHHHHHHHHh
Q 040171 179 --ETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSK 216 (329)
Q Consensus 179 --dlVaLsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~ 216 (329)
++..|.|+|.+ +++|...++|..
T Consensus 234 ~~~v~~laG~d~~---------------Ti~p~ll~~L~~ 258 (391)
T PRK12309 234 IGEIIELAGCDLL---------------TISPKLLEQLRS 258 (391)
T ss_pred HHHHHHHHCCCee---------------eCCHHHHHHHHh
Confidence 22233333322 577888888876
No 24
>PRK05269 transaldolase B; Provisional
Probab=50.92 E-value=57 Score=32.02 Aligned_cols=143 Identities=17% Similarity=0.268 Sum_probs=71.9
Q ss_pred CCHHHHHHHhHHHHH--HHhCCCCcccCCCCCCCCCCCCCCC-CC----CCCCCCHHHHHHHHHHcCCCccccee-----
Q 040171 115 VSCADIIALATRDAV--ALAGGLNYSLPTGRLDGLRSNADEV-NL----PGTSLSVPNVLQMFAEKGFNTTETVV----- 182 (329)
Q Consensus 115 VScADilalAar~av--~~~GGP~~~v~~GR~D~~~s~~~~~-~L----P~p~~~~~~l~~~F~~~Gls~~dlVa----- 182 (329)
|+|-=-+.|....|+ ..+|-..+..+.||-|...-...+. .. -++-..+.++.+.|++.|+..+-|.|
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~ 230 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNT 230 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCH
Confidence 444333344444333 3347788999999998653211110 11 11234688888999999987653332
Q ss_pred -----ecccceeccccccccCCcCCCCCCCHHHHHHHHhhC-CCCCCCCCCCCCCCCCCCcccChHHHHHhhhcccCccc
Q 040171 183 -----ILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKAC-EASSGSDDPMTNLDRGTPTSLDSQYYNQTLFKRGVLQI 256 (329)
Q Consensus 183 -----LsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~C-p~~~~~~~~~~~lD~~tp~~FDN~Yy~~l~~~~gll~S 256 (329)
|.|+|++ ++.|...++|...- +....-. ....- ...+..+|-..|+-.++.
T Consensus 231 ~~v~~laG~d~v---------------Ti~p~ll~~l~~~~~~~~~~l~-~~~~~-~~~~~~~~e~~f~~~~~~------ 287 (318)
T PRK05269 231 GQILELAGCDRL---------------TISPALLEELAASEGELERKLS-PPGEA-KARPVPLTEAEFRWQHNE------ 287 (318)
T ss_pred HHHHHHhCCCeE---------------ECCHHHHHHHHhcCCCccccCC-Ccccc-ccccccCCHHHHHHHhCc------
Confidence 2233322 57788888887432 1110000 00000 113556677777654332
Q ss_pred hhhhccCcchHHHHhhhccChhHHHH
Q 040171 257 DQALALDASTHDIVAHFANDEDDFQL 282 (329)
Q Consensus 257 D~~L~~d~~t~~~V~~yA~d~~~F~~ 282 (329)
|. ........-++.|+.|+....+
T Consensus 288 d~--ma~ekl~egi~~F~~~~~~L~~ 311 (318)
T PRK05269 288 DA--MATEKLAEGIRKFAKDQEKLEK 311 (318)
T ss_pred cc--chHHHHHHHHHHHHHHHHHHHH
Confidence 21 1223345556666666554443
No 25
>PRK12346 transaldolase A; Provisional
Probab=41.88 E-value=27 Score=34.30 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=53.4
Q ss_pred CCCHHHHHHHhHHHHH--HHhCCCCcccCCCCCCCCCCCCCCC-CCCC----CCCCHHHHHHHHHHcCCCc---------
Q 040171 114 TVSCADIIALATRDAV--ALAGGLNYSLPTGRLDGLRSNADEV-NLPG----TSLSVPNVLQMFAEKGFNT--------- 177 (329)
Q Consensus 114 ~VScADilalAar~av--~~~GGP~~~v~~GR~D~~~s~~~~~-~LP~----p~~~~~~l~~~F~~~Gls~--------- 177 (329)
.|+|-=.+.|....++ ..+|-..+..+.||-|......... .++. +-..+.++.++|++.|+..
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn 228 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRR 228 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCC
Confidence 4555544555555544 3358888999999998753221111 1211 1235788888998888754
Q ss_pred -ccceeecccceeccccccccCCcCCCCCCCHHHHHHHHhh
Q 040171 178 -TETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKA 217 (329)
Q Consensus 178 -~dlVaLsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~ 217 (329)
+|+.+|.|+|.+ +++|...++|...
T Consensus 229 ~~qi~alaG~d~l---------------Ti~p~ll~~L~~~ 254 (316)
T PRK12346 229 TEQILALAGCDRL---------------TISPNLLKELQES 254 (316)
T ss_pred HHHHHHHhCCCEE---------------eCCHHHHHHHHhc
Confidence 344444554433 5778888888653
No 26
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.76 E-value=69 Score=24.64 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHhhccc
Q 040171 36 SIIFNVVQRRFNTDRSITGALLRMHFHDCF 65 (329)
Q Consensus 36 ~iV~~~v~~~~~~~~~~a~~llRL~FHDcf 65 (329)
-|.|+.+++.++++|.+-...||+.+---.
T Consensus 23 fiark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 23 FIARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 478999999999999999999999886554
No 27
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=24.74 E-value=43 Score=28.92 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHcCCCcccceeec-ccceecccc
Q 040171 161 LSVPNVLQMFAEKGFNTTETVVIL-GAHTVGVVH 193 (329)
Q Consensus 161 ~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~~h 193 (329)
+++.+.+-.|+++||++.++=+++ -+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 346666778999999999975554 899999876
No 28
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=23.52 E-value=83 Score=26.62 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCC--cccceeecccc
Q 040171 163 VPNVLQMFAEKGFN--TTETVVILGAH 187 (329)
Q Consensus 163 ~~~l~~~F~~~Gls--~~dlVaLsGaH 187 (329)
+.+-++.+ +++++ ..++++|||.|
T Consensus 14 i~~pl~~I-ar~~s~~~~~I~IlSGtH 39 (119)
T PF15656_consen 14 INAPLETI-ARRPSGDNGDIHILSGTH 39 (119)
T ss_pred hHHHHHHH-HhCcCCCCCCEEEEeCCC
Confidence 33444444 45565 89999999998
No 29
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.72 E-value=1.1e+02 Score=26.12 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCCC-CCCCccccccccccc
Q 040171 282 LSFANVMVKLGSLQVL-TDGQGEIRQNCRAFN 312 (329)
Q Consensus 282 ~~Fa~Am~Km~~lgv~-tg~~GeiR~~C~~~n 312 (329)
.||-+|=.||..-+.. .-++||||+.=+..|
T Consensus 72 ~dw~~~~~~~~~~~~~~~~pdg~~rry~~~~n 103 (127)
T PF06163_consen 72 KDWDKARKKLVDPDLIWKLPDGEIRRYDRRQN 103 (127)
T ss_pred HHHHHhHHhhccchhhhhCCCccccccccccc
Confidence 4555555555322221 125899998655555
No 30
>PRK01844 hypothetical protein; Provisional
Probab=21.35 E-value=1.3e+02 Score=23.27 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHhhccc
Q 040171 37 IIFNVVQRRFNTDRSITGALLRMHFHDCF 65 (329)
Q Consensus 37 iV~~~v~~~~~~~~~~a~~llRL~FHDcf 65 (329)
+-|..+++.++++|.+-...||..|---.
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999999876543
No 31
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.61 E-value=1.4e+02 Score=29.23 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=36.9
Q ss_pred CCCCCCCCHHHHHHHHHH--cCCCcccceeecccceeccccccccCCcCCCCCCCHHHHHHHHhhCCCC
Q 040171 155 NLPGTSLSVPNVLQMFAE--KGFNTTETVVILGAHTVGVVHCSFFQDRLADSDMDPAFAQELSKACEAS 221 (329)
Q Consensus 155 ~LP~p~~~~~~l~~~F~~--~Gls~~dlVaLsGaHTiG~~hc~~f~~Rl~dp~~d~~~~~~L~~~Cp~~ 221 (329)
+.|.|.-+.+++.++-.. +=+...|+|+|+|.- -|.+.++|..+|-+.|-..
T Consensus 105 n~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSl---------------P~g~~~d~y~~li~~~~~~ 158 (310)
T COG1105 105 NFPGPEISEAELEQFLEQLKALLESDDIVVLSGSL---------------PPGVPPDAYAELIRILRQQ 158 (310)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCC---------------CCCCCHHHHHHHHHHHHhc
Confidence 788888877766665443 348899999999832 2457777777777777543
No 32
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=20.04 E-value=57 Score=25.99 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.4
Q ss_pred hhccChhHHHHHHHHHHHHHhc
Q 040171 272 HFANDEDDFQLSFANVMVKLGS 293 (329)
Q Consensus 272 ~yA~d~~~F~~~Fa~Am~Km~~ 293 (329)
.|-..|+.||+.|+..+.|=+.
T Consensus 37 rY~~~QskFFe~~A~~~tkR~~ 58 (90)
T PLN00017 37 RYNPLQSKFFETFAAPFTKRGL 58 (90)
T ss_pred CCChHHHHHHHHHhhhhhHHHH
Confidence 4666799999999998877543
Done!