Query 040173
Match_columns 116
No_of_seqs 108 out of 184
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01277 Oleosin: Oleosin; In 100.0 4.7E-50 1E-54 293.5 15.0 112 2-113 5-117 (118)
2 PF11990 DUF3487: Protein of u 93.1 0.85 1.8E-05 33.5 7.9 52 22-84 30-82 (121)
3 PF01277 Oleosin: Oleosin; In 92.7 3.1 6.7E-05 30.9 12.3 96 15-114 11-111 (118)
4 PF04156 IncA: IncA protein; 90.1 6.3 0.00014 29.3 11.4 33 18-50 13-47 (191)
5 PRK10801 colicin uptake protei 85.8 13 0.00029 29.5 9.9 67 23-95 139-209 (227)
6 PF12537 DUF3735: Protein of u 85.6 4.2 9E-05 27.0 5.9 54 50-110 15-71 (72)
7 TIGR02797 exbB tonB-system ene 85.3 12 0.00027 29.1 9.4 70 23-104 134-206 (211)
8 PRK09459 pspG phage shock prot 85.2 10 0.00023 26.4 8.1 55 14-81 12-66 (76)
9 COG0811 TolQ Biopolymer transp 85.0 16 0.00035 28.6 9.9 80 9-105 125-207 (216)
10 PRK10414 biopolymer transport 84.6 16 0.00034 29.6 9.9 82 6-98 133-218 (244)
11 TIGR03750 conj_TIGR03750 conju 83.9 12 0.00025 27.5 8.1 52 23-85 28-80 (111)
12 TIGR02796 tolQ TolQ protein. T 81.1 12 0.00025 29.4 7.7 81 5-102 124-208 (215)
13 PRK15083 PTS system mannitol-s 78.4 6.3 0.00014 35.6 6.1 35 67-102 325-359 (639)
14 PF01618 MotA_ExbB: MotA/TolQ/ 78.1 23 0.00049 25.5 7.9 54 23-82 70-126 (139)
15 COG4818 Predicted membrane pro 75.0 19 0.00041 26.5 6.7 49 34-82 36-85 (105)
16 PF06103 DUF948: Bacterial pro 72.3 26 0.00056 23.4 6.6 49 57-105 9-58 (90)
17 PF09583 Phageshock_PspG: Phag 70.8 30 0.00065 23.5 7.7 26 14-39 12-37 (65)
18 PF01484 Col_cuticle_N: Nemato 70.0 16 0.00035 21.8 4.7 14 68-81 17-30 (53)
19 PF08006 DUF1700: Protein of u 68.8 46 0.001 24.8 11.9 18 27-45 107-124 (181)
20 PRK00523 hypothetical protein; 68.2 30 0.00064 23.9 6.1 34 70-109 25-58 (72)
21 PF10112 Halogen_Hydrol: 5-bro 68.0 51 0.0011 25.0 8.9 13 89-101 70-82 (199)
22 PF07178 TraL: TraL protein; 66.8 23 0.00051 24.3 5.5 30 53-82 29-59 (95)
23 PRK15100 amino acid ABC transp 66.5 56 0.0012 24.9 10.0 25 70-94 98-124 (220)
24 PRK01844 hypothetical protein; 64.6 38 0.00083 23.3 6.1 34 70-109 24-57 (72)
25 PF07332 DUF1469: Protein of u 64.2 45 0.00097 23.0 10.2 39 64-105 82-120 (121)
26 TIGR01667 YCCS_YHJK integral m 64.0 77 0.0017 29.3 9.8 18 23-40 434-451 (701)
27 PF12732 YtxH: YtxH-like prote 63.2 17 0.00036 23.7 4.1 12 56-67 3-14 (74)
28 PF05957 DUF883: Bacterial pro 63.0 8.6 0.00019 26.1 2.8 25 87-111 38-62 (94)
29 TIGR01666 YCCS hypothetical me 62.7 95 0.0021 28.9 10.1 20 23-42 432-451 (704)
30 TIGR02976 phageshock_pspB phag 61.9 48 0.001 22.6 6.5 38 71-108 18-59 (75)
31 PF12732 YtxH: YtxH-like prote 61.4 40 0.00086 21.9 5.6 16 87-102 33-48 (74)
32 TIGR02975 phageshock_pspG phag 60.2 51 0.0011 22.3 7.6 26 14-39 11-36 (64)
33 PF05957 DUF883: Bacterial pro 59.6 11 0.00023 25.6 2.7 28 85-112 25-52 (94)
34 PF11286 DUF3087: Protein of u 58.5 88 0.0019 24.5 8.0 42 68-109 59-105 (165)
35 PRK00247 putative inner membra 58.1 1.1E+02 0.0024 27.0 9.4 32 29-60 229-262 (429)
36 PF02987 LEA_4: Late embryogen 55.2 18 0.00038 21.7 2.9 19 90-108 13-31 (44)
37 PF12153 CAP18_C: LPS binding 54.5 20 0.00043 20.7 2.8 24 87-110 2-25 (28)
38 PF04632 FUSC: Fusaric acid re 53.4 1.5E+02 0.0033 25.7 9.8 40 22-61 52-93 (650)
39 TIGR02805 exbB2 tonB-system en 52.3 70 0.0015 24.3 6.3 57 23-82 70-126 (138)
40 PRK10404 hypothetical protein; 52.1 17 0.00037 25.9 2.8 27 86-112 44-70 (101)
41 PRK01345 heat shock protein Ht 49.9 1.5E+02 0.0032 24.6 8.4 27 83-109 60-86 (317)
42 PF03672 UPF0154: Uncharacteri 49.6 61 0.0013 21.8 5.0 33 71-109 18-50 (64)
43 TIGR01097 PhnE phosphonate ABC 48.9 1.2E+02 0.0026 23.3 8.1 26 69-94 135-162 (250)
44 PF06695 Sm_multidrug_ex: Puta 48.1 1E+02 0.0022 22.2 7.7 14 69-82 35-48 (121)
45 PF14017 DUF4233: Protein of u 45.2 75 0.0016 22.8 5.3 41 41-81 55-97 (107)
46 PRK04897 heat shock protein Ht 44.6 1.3E+02 0.0027 24.6 7.2 39 70-108 59-98 (298)
47 PF01970 TctA: Tripartite tric 44.6 46 0.00099 28.8 4.8 31 20-50 93-123 (419)
48 PF12805 FUSC-like: FUSC-like 44.4 1.6E+02 0.0035 23.4 10.8 25 53-77 72-96 (284)
49 TIGR03003 ectoine_ehuD ectoine 44.0 1.3E+02 0.0029 22.3 8.8 29 66-94 90-122 (212)
50 PF06120 Phage_HK97_TLTM: Tail 43.2 51 0.0011 27.8 4.8 43 59-109 21-66 (301)
51 PF14276 DUF4363: Domain of un 42.4 93 0.002 21.7 5.4 30 68-97 10-40 (121)
52 PF01484 Col_cuticle_N: Nemato 41.3 76 0.0017 18.8 4.3 46 60-109 3-48 (53)
53 PF14333 DUF4389: Domain of un 40.2 1.1E+02 0.0025 20.5 7.1 18 65-82 25-42 (80)
54 TIGR01597 PYST-B Plasmodium yo 39.6 1.1E+02 0.0023 25.8 6.0 12 70-81 234-245 (255)
55 PF12259 DUF3609: Protein of u 38.0 11 0.00023 32.3 0.0 13 70-82 314-326 (361)
56 COG2212 MnhF Multisubunit Na+/ 37.0 46 0.001 23.5 3.1 26 63-89 10-35 (89)
57 PF08828 DSX_dimer: Doublesex 36.8 31 0.00067 23.2 2.0 22 88-109 37-58 (62)
58 PRK07948 putative monovalent c 36.7 41 0.00088 23.3 2.7 24 67-91 12-35 (86)
59 COG4537 ComGC Competence prote 36.5 31 0.00067 25.5 2.2 28 19-46 12-39 (107)
60 TIGR03416 ABC_choXWV_perm chol 36.4 2.2E+02 0.0047 22.6 8.0 21 20-40 93-113 (267)
61 COG2148 WcaJ Sugar transferase 36.1 44 0.00096 27.2 3.3 23 31-53 47-69 (226)
62 PRK10631 p-hydroxybenzoic acid 35.7 3.7E+02 0.0079 25.0 9.7 41 14-54 60-102 (652)
63 PF12597 DUF3767: Protein of u 35.7 1.3E+02 0.0028 21.9 5.4 61 24-98 46-107 (118)
64 PF01618 MotA_ExbB: MotA/TolQ/ 35.7 52 0.0011 23.5 3.3 21 20-40 100-120 (139)
65 COG4241 Predicted membrane pro 35.4 62 0.0013 27.8 4.1 33 67-99 104-143 (314)
66 PRK12657 putative monovalent c 35.4 57 0.0012 23.3 3.4 25 66-91 16-40 (100)
67 PF12270 Cyt_c_ox_IV: Cytochro 35.3 81 0.0018 23.9 4.4 44 39-82 83-134 (137)
68 PF07889 DUF1664: Protein of u 34.2 41 0.00088 25.1 2.6 30 83-112 46-75 (126)
69 PRK13707 conjugal transfer pil 34.0 1.4E+02 0.003 21.2 5.2 28 55-82 37-65 (101)
70 PF02397 Bac_transf: Bacterial 33.6 61 0.0013 25.3 3.6 24 30-53 6-29 (187)
71 PF06796 NapE: Periplasmic nit 33.1 1.4E+02 0.0031 19.5 4.8 14 68-81 39-52 (56)
72 COG0811 TolQ Biopolymer transp 32.6 55 0.0012 25.6 3.2 20 20-39 164-183 (216)
73 COG3109 ProQ Activator of osmo 32.4 50 0.0011 26.8 2.9 29 86-114 93-122 (208)
74 PF13829 DUF4191: Domain of un 32.3 1.7E+02 0.0037 23.9 6.1 43 16-60 33-75 (224)
75 TIGR03884 sel_bind_Methan sele 31.2 37 0.00079 23.5 1.8 19 86-104 24-42 (74)
76 PRK09421 modB molybdate ABC tr 31.1 2.3E+02 0.005 21.3 7.8 17 37-53 49-65 (229)
77 PF07332 DUF1469: Protein of u 31.1 1.8E+02 0.0038 20.0 10.4 7 97-103 105-111 (121)
78 COG4736 CcoQ Cbb3-type cytochr 31.0 42 0.00091 22.2 2.0 33 69-106 23-55 (60)
79 cd03513 CrtW_beta-carotene-ket 30.9 2.3E+02 0.005 22.5 6.5 22 20-41 1-22 (225)
80 COG1270 CbiB Cobalamin biosynt 29.9 3.5E+02 0.0077 23.1 8.1 29 71-99 98-128 (320)
81 COG1422 Predicted membrane pro 29.2 3.1E+02 0.0067 22.2 9.7 23 38-60 35-57 (201)
82 PF06295 DUF1043: Protein of u 28.9 1.4E+02 0.0031 21.6 4.6 25 73-97 14-42 (128)
83 PRK03072 heat shock protein Ht 28.7 3.2E+02 0.0069 22.2 8.2 36 73-108 52-88 (288)
84 PRK09731 putative general secr 28.5 2.1E+02 0.0045 22.4 5.8 30 83-112 58-90 (178)
85 COG4425 Predicted membrane pro 28.3 1.4E+02 0.003 27.6 5.3 60 18-82 46-105 (588)
86 PF11460 DUF3007: Protein of u 27.7 2.4E+02 0.0051 20.7 5.6 24 70-95 45-68 (104)
87 PRK12604 putative monovalent c 27.0 64 0.0014 22.3 2.4 23 67-90 11-33 (84)
88 PF08006 DUF1700: Protein of u 26.2 2.7E+02 0.0059 20.6 11.6 15 32-46 118-132 (181)
89 PRK12600 putative monovalent c 26.2 74 0.0016 22.3 2.7 23 68-91 14-36 (94)
90 TIGR02973 nitrate_rd_NapE peri 25.9 1.7E+02 0.0038 18.2 4.8 14 68-81 26-39 (42)
91 PRK06161 putative monovalent c 25.8 76 0.0017 22.0 2.6 22 67-89 13-34 (89)
92 COG4575 ElaB Uncharacterized c 25.5 78 0.0017 23.2 2.7 24 88-111 49-72 (104)
93 TIGR01710 typeII_sec_gspG gene 25.0 2.6E+02 0.0057 20.0 6.4 22 92-113 38-59 (134)
94 TIGR01104 V_PPase vacuolar-typ 25.0 1.8E+02 0.0038 27.7 5.5 38 64-101 10-47 (697)
95 TIGR01998 PTS-II-BC-nag PTS sy 24.8 3.4E+02 0.0074 24.0 7.0 40 27-66 152-191 (476)
96 cd01324 cbb3_Oxidase_CcoQ Cyto 24.5 1.8E+02 0.004 18.0 4.2 25 65-94 20-44 (48)
97 PRK15127 multidrug efflux syst 24.3 1.5E+02 0.0033 28.4 5.1 50 24-76 977-1029(1049)
98 PRK01315 putative inner membra 24.2 3E+02 0.0066 23.4 6.4 31 30-60 217-247 (329)
99 TIGR02797 exbB tonB-system ene 24.1 83 0.0018 24.5 2.9 21 21-41 165-185 (211)
100 KOG3088 Secretory carrier memb 23.8 4.7E+02 0.01 22.6 7.4 21 62-82 253-273 (313)
101 PRK13023 bifunctional preprote 23.8 5.2E+02 0.011 24.6 8.4 34 22-55 379-412 (758)
102 TIGR00930 2a30 K-Cl cotranspor 23.6 5.7E+02 0.012 24.7 8.7 41 40-81 498-538 (953)
103 PRK10782 DL-methionine transpo 23.1 3.2E+02 0.007 20.3 9.0 26 69-94 98-125 (217)
104 PRK12599 putative monovalent c 23.1 88 0.0019 21.7 2.6 22 68-90 16-37 (91)
105 PRK10574 putative major pilin 22.9 3.3E+02 0.0071 20.3 6.4 25 88-112 38-62 (146)
106 PF03773 DUF318: Predicted per 22.8 4.2E+02 0.009 21.5 8.1 21 37-57 89-109 (307)
107 TIGR02972 TMAO_torE trimethyla 22.7 2.2E+02 0.0047 18.1 4.8 14 68-81 31-44 (47)
108 COG4709 Predicted membrane pro 22.4 4.2E+02 0.0091 21.4 10.6 23 56-78 151-173 (195)
109 PF00489 IL6: Interleukin-6/G- 22.4 2.4E+02 0.0051 21.1 4.9 37 76-112 70-107 (154)
110 PRK15357 pathogenicity island 22.2 1.6E+02 0.0036 24.0 4.2 37 76-113 116-152 (229)
111 PF06166 DUF979: Protein of un 21.9 3E+02 0.0065 23.7 5.9 36 60-97 123-158 (308)
112 COG4298 Uncharacterized protei 21.8 1.5E+02 0.0032 21.5 3.5 51 38-94 31-84 (95)
113 PRK13022 secF preprotein trans 21.6 4.5E+02 0.0098 21.4 7.9 32 22-53 231-262 (289)
114 PRK12612 putative monovalent c 21.5 1.6E+02 0.0035 20.2 3.6 24 65-89 11-34 (87)
115 PF12420 DUF3671: Protein of u 21.4 3.1E+02 0.0067 19.5 6.2 20 61-80 80-99 (104)
116 PF03030 H_PPase: Inorganic H+ 21.3 1.4E+02 0.0031 28.1 4.2 35 67-101 3-37 (682)
117 TIGR02805 exbB2 tonB-system en 21.2 1.3E+02 0.0028 22.9 3.3 22 20-41 100-121 (138)
118 PRK02463 OxaA-like protein pre 20.4 4.1E+02 0.009 22.2 6.4 42 30-80 210-251 (307)
119 PF01034 Syndecan: Syndecan do 20.3 20 0.00043 24.2 -1.1 26 69-95 27-52 (64)
120 TIGR02865 spore_II_E stage II 20.2 6E+02 0.013 23.8 8.0 22 25-46 240-261 (764)
121 PF14219 DUF4328: Domain of un 20.1 2.4E+02 0.0051 20.8 4.5 28 54-81 24-51 (171)
No 1
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=100.00 E-value=4.7e-50 Score=293.55 Aligned_cols=112 Identities=24% Similarity=0.417 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040173 2 LCASLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVER 81 (116)
Q Consensus 2 vl~~~tl~~~gg~LL~LaGlTL~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g 81 (116)
+++++++++.+++||.|+|+||+||++||+++||||+||||||||++++++++++||++||+||++++++++|+|||+||
T Consensus 5 vl~~~~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg 84 (118)
T PF01277_consen 5 VLAVVTLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAIGLAVAGFLTSGAFGLTALSSLSWMYNYFRG 84 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccccchHHHHHhhHhHHHHHhHHHHHhhhh
Q 040173 82 L-EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQL 113 (116)
Q Consensus 82 ~-p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~~ 113 (116)
+ |+++||+||||+|++|+++|+|||+||+||+
T Consensus 85 ~~~~~~~q~d~Ak~ri~d~a~~v~~kake~gq~ 117 (118)
T PF01277_consen 85 RHPPGPDQLDYAKRRIADTASYVGQKAKEVGQK 117 (118)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9 9999999999999999999999999999996
No 2
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=93.05 E-value=0.85 Score=33.54 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040173 22 SFLATVTLLLISSPVLLIFSPL-LVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEV 84 (116)
Q Consensus 22 TL~gtvigL~vatPL~vifSPV-lVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~ 84 (116)
...++++|+.++.|+-++++++ .+|....++.+..=+. .-.|+-|+-||+|.
T Consensus 30 a~~~~~~g~~~gl~la~~~g~~a~~pt~~ll~~~~~v~~-----------gg~~l~rlKRGKP~ 82 (121)
T PF11990_consen 30 AGVGFVAGLVVGLPLALLTGWWAMIPTGALLGPILGVFV-----------GGKLLARLKRGKPE 82 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHcCCch
Confidence 3467889999999999999988 6777766555543322 33678888888864
No 3
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=92.74 E-value=3.1 Score=30.88 Aligned_cols=96 Identities=17% Similarity=0.036 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhHHH---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcccccccch
Q 040173 15 LFGMMGFSFLATVTLLLISSPVLLIFSPLLV---SAVFVLVGALTGFTAAI--AMGIAGVFTLAWICREVERLEVLVWVV 89 (116)
Q Consensus 15 LL~LaGlTL~gtvigL~vatPL~vifSPVlV---Paai~~~l~~~Gfl~sg--~~g~~~ls~lsW~~~y~~g~p~g~~~~ 89 (116)
++...|..|.=+-+-|.-+.=-+++.+|+++ |.-+-.+.+ .++..+| ..|.-++..++|+-.-+|- -.+.++
T Consensus 11 ~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~-~~l~~~Gfl~sg~~g~~~ls~lsW~~~y-~rg~~~- 87 (118)
T PF01277_consen 11 LLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIA-IGLAVAGFLTSGAFGLTALSSLSWMYNY-FRGRHP- 87 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH-hccCCC-
Confidence 3334444444333444444444788899876 544444333 3344433 2445567888888776544 222221
Q ss_pred HHHHHhhHhHHHHHhHHHHHhhhhh
Q 040173 90 EVSSQQSLNLKKYVGKRKEKKQQLN 114 (116)
Q Consensus 90 d~Ar~R~~d~a~~vg~k~~e~g~~~ 114 (116)
..-+|+++..++++|++++++||.
T Consensus 88 -~~~~q~d~Ak~ri~d~a~~v~~ka 111 (118)
T PF01277_consen 88 -PGPDQLDYAKRRIADTASYVGQKA 111 (118)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHH
Confidence 112456667778888888888875
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.09 E-value=6.3 Score=29.34 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhh--hHHHHhhHHHHHHHH
Q 040173 18 MMGFSFLATVTLLLISSP--VLLIFSPLLVSAVFV 50 (116)
Q Consensus 18 LaGlTL~gtvigL~vatP--L~vifSPVlVPaai~ 50 (116)
..|+.+..+.|++.+..+ +-.++|+.+....++
T Consensus 13 ilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lA 47 (191)
T PF04156_consen 13 ILGILLIASGIAALVLFISGLGALISFILGIALLA 47 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444443333332 445555555444443
No 5
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=85.79 E-value=13 Score=29.49 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccchHHHHHh
Q 040173 23 FLATVTLLLISSPVLLIF---SPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL-EVLVWVVEVSSQQ 95 (116)
Q Consensus 23 L~gtvigL~vatPL~vif---SPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~-p~g~~~~d~Ar~R 95 (116)
|.|||+|++-+.--+=.- +|-.+-.+|.-+|.+| ++|+..-=.-...|||++++ ..-..++|+...+
T Consensus 139 LlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitT------a~GL~vAIPAli~yN~f~~ri~~i~~~le~~a~~ 209 (227)
T PRK10801 139 LFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIAT------AIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEE 209 (227)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888887654322110 3444444555555443 34444444445789999875 3333344444333
No 6
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=85.65 E-value=4.2 Score=26.99 Aligned_cols=54 Identities=9% Similarity=0.037 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccc-ccchHHHHHhhHhHHHHHhHHHHHh
Q 040173 50 VLVGALTGFTAAIAMGIAGVFTLAWICREVERL--EVL-VWVVEVSSQQSLNLKKYVGKRKEKK 110 (116)
Q Consensus 50 ~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~--p~g-~~~~d~Ar~R~~d~a~~vg~k~~e~ 110 (116)
+++..+.+.|| |.++++--|.|+.=. +.. ..++..+.+|+..+-+...+|-||+
T Consensus 15 ViGVt~mAiLS-------G~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 15 VIGVTLMAILS-------GFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHh-------hhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666 333444444444332 443 5667788888887777788887764
No 7
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=85.32 E-value=12 Score=29.09 Aligned_cols=70 Identities=14% Similarity=-0.000 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHhhHhH
Q 040173 23 FLATVTLLLISSPVLLIF---SPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNL 99 (116)
Q Consensus 23 L~gtvigL~vatPL~vif---SPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~ 99 (116)
|.|||+|++-+.--+=-- +|--+-.+|.-+|.+| ++|+..-=.-...|||+++ |.|.-+++|.+.
T Consensus 134 LLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALitT------A~GL~VAIPAli~yn~f~~------ri~~~~~~le~~ 201 (211)
T TIGR02797 134 LFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLAT------AIGLVAAIPAVVIYNVFAR------SIAGYRALLADA 201 (211)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 467888877654322100 2433333444444333 3344444444578999976 567777777777
Q ss_pred HHHHh
Q 040173 100 KKYVG 104 (116)
Q Consensus 100 a~~vg 104 (116)
+.++-
T Consensus 202 ~~e~~ 206 (211)
T TIGR02797 202 SAGVE 206 (211)
T ss_pred HHHHH
Confidence 66553
No 8
>PRK09459 pspG phage shock protein G; Reviewed
Probab=85.22 E-value=10 Score=26.38 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040173 14 PLFGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVER 81 (116)
Q Consensus 14 ~LL~LaGlTL~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g 81 (116)
..|.++|+|+.|...++.+++-...+..=. |+.--=-=.+--.....|+||..+.
T Consensus 12 ~~LlvTGiSllgv~aAl~va~~vM~l~Gm~-------------~lviKLLPWLil~~v~vW~~r~~~~ 66 (76)
T PRK09459 12 VMLLVTGISLLGIIAALGVATLVMFLGGMF-------------ALMIKLLPWLLLAVVVVWVIRAIKA 66 (76)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357889999999998888877655443211 0000011123334667899998765
No 9
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=84.96 E-value=16 Score=28.62 Aligned_cols=80 Identities=16% Similarity=0.064 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 040173 9 VAIGGPLFGMMGFSFLATVTLLLISSPVLLIFS---PLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVL 85 (116)
Q Consensus 9 ~~~gg~LL~LaGlTL~gtvigL~vatPL~vifS---PVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~g 85 (116)
....+.++. |.|||+|+.-+. .=.+ . -=|++++-+++.+ +.+-+.|+.+--.-...|||++++
T Consensus 125 I~s~aP~lG-----L~GTV~GIm~aF---~~i~~~~~-~~~a~vA~GIseA--L~aTA~GL~vAIPAvi~yn~l~r~--- 190 (216)
T COG0811 125 IGSIAPFLG-----LLGTVWGIMPAF---IGIGAGGG-ADLAVVAPGISEA--LIATAIGLFVAIPAVVAYNVLRRK--- 190 (216)
T ss_pred HHHhhhHHH-----HHHHHHHHHHHH---HHHhccCC-CCHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 334444554 457787776442 2222 1 1233333333332 223355666666677899999885
Q ss_pred ccchHHHHHhhHhHHHHHhH
Q 040173 86 VWVVEVSSQQSLNLKKYVGK 105 (116)
Q Consensus 86 ~~~~d~Ar~R~~d~a~~vg~ 105 (116)
.+.=.+++.+.++++-+
T Consensus 191 ---~~~~~~~~e~~~~~l~~ 207 (216)
T COG0811 191 ---VEELLAKLEDFAEELEL 207 (216)
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 33333445555544433
No 10
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=84.62 E-value=16 Score=29.62 Aligned_cols=82 Identities=18% Similarity=0.096 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040173 6 LAGVAIGGPLFGMMGFSFLATVTLLLISSPVLL---IFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL 82 (116)
Q Consensus 6 ~tl~~~gg~LL~LaGlTL~gtvigL~vatPL~v---ifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~ 82 (116)
+........++. |.|||+|++-+.--+= --+|-.+-.+|.-+|..| ++|+..--.-...|||++.+
T Consensus 133 L~ti~~~aPllG-----LlGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALitT------a~GL~vAIPAliayn~f~~r 201 (244)
T PRK10414 133 LATIGAISPFVG-----LFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLAT------AIGLVAAIPAVVIYNVFARQ 201 (244)
T ss_pred HHHHHHHhhHHH-----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 333444445554 4578888876543321 025656655666665544 44555555556899999987
Q ss_pred -cccccchHHHHHhhHh
Q 040173 83 -EVLVWVVEVSSQQSLN 98 (116)
Q Consensus 83 -p~g~~~~d~Ar~R~~d 98 (116)
..-.+++|+...++.+
T Consensus 202 i~~~~~~me~~a~~l~~ 218 (244)
T PRK10414 202 IGGYKAMLGDVAAQVLL 218 (244)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5555666666555543
No 11
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.91 E-value=12 Score=27.49 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 040173 23 FLATVTLLLISSPVLLIFS-PLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERLEVL 85 (116)
Q Consensus 23 L~gtvigL~vatPL~vifS-PVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~p~g 85 (116)
.++.+.|+++..|+.++++ ..++|..+.++.+.. . .-.-.|+-|+=||+|.+
T Consensus 28 ~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~-v----------~~gg~~l~rlKRGrPe~ 80 (111)
T TIGR03750 28 GVGLAAGLVLGLLLALLAGPWALIPTGALLGPILV-V----------LIGGKLLARLKRGKPEG 80 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----------HHhHHHHHHHHcCCCch
Confidence 3566778888888866666 556666555554332 1 12335777777887643
No 12
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=81.07 E-value=12 Score=29.41 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040173 5 SLAGVAIGGPLFGMMGFSFLATVTLLLISSPVLLI----FSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVE 80 (116)
Q Consensus 5 ~~tl~~~gg~LL~LaGlTL~gtvigL~vatPL~vi----fSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~ 80 (116)
++........+|.| .|||+|++-+.--+=. -+|-.+--+|.-+|..| ++|+..-=.-.=.|||++
T Consensus 124 ~L~ti~~~aPllGL-----LGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitT------a~GL~vAIPali~yn~f~ 192 (215)
T TIGR02796 124 FLATIGSTSPFIGL-----FGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIAT------AIGLFAAIPAVIAYNKLS 192 (215)
T ss_pred HHHHHHHHhhHHHH-----HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 33444445555554 5788887765433322 12333444444444433 233333223335799998
Q ss_pred cccccccchHHHHHhhHhHHHH
Q 040173 81 RLEVLVWVVEVSSQQSLNLKKY 102 (116)
Q Consensus 81 g~p~g~~~~d~Ar~R~~d~a~~ 102 (116)
++ +|.-.++|.+.+.+
T Consensus 193 ~~------i~~~~~~me~~~~~ 208 (215)
T TIGR02796 193 TQ------VNKIEQRYENFADE 208 (215)
T ss_pred HH------HHHHHHHHHHHHHH
Confidence 74 44444444444433
No 13
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=78.45 E-value=6.3 Score=35.55 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcccccccchHHHHHhhHhHHHH
Q 040173 67 AGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKY 102 (116)
Q Consensus 67 ~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~~ 102 (116)
..-..++|+.++..++.. .|.+|.|++|+++.+.+
T Consensus 325 ~v~~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 359 (639)
T PRK15083 325 AVSFVVSAILLKTSKVKE-EDDLEAATRRMQDMKAE 359 (639)
T ss_pred HHHHHHHHHHHHhccccc-hhhHHHHHHHHHHhhhc
Confidence 334577788887766521 23699999999886543
No 14
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=78.13 E-value=23 Score=25.47 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040173 23 FLATVTLLLISSPVLLI---FSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL 82 (116)
Q Consensus 23 L~gtvigL~vatPL~vi---fSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~ 82 (116)
|.||++|++.+..=+=. -.|--+-..+..++..+ ..|+..--....+|+|++.+
T Consensus 70 LlGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~tT------~~GL~vai~~~~~~~~l~~~ 126 (139)
T PF01618_consen 70 LLGTVIGMIEAFQALAETGSGDPSQLAGGISVALITT------AYGLVVAIPALPFYNYLKRR 126 (139)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 56888888776544322 12333333333333322 23333333333888988764
No 15
>COG4818 Predicted membrane protein [Function unknown]
Probab=75.00 E-value=19 Score=26.48 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=36.4
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Q 040173 34 SPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGV-FTLAWICREVERL 82 (116)
Q Consensus 34 tPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~l-s~lsW~~~y~~g~ 82 (116)
..-++.|+|+++-..++.+.=..|-+.|+..++++. -++..|||-.||.
T Consensus 36 mQS~ltF~~l~~l~ill~~iP~Ig~lls~~v~l~a~iLwlv~mykAyrGe 85 (105)
T COG4818 36 MQSFLTFLGLWLLIILLAFIPYIGWLLSGLVGLAAFILWLVCMYKAYRGE 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHcCC
Confidence 445678888888777766666668888888887654 5677789988985
No 16
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=72.34 E-value=26 Score=23.37 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cccccchHHHHHhhHhHHHHHhH
Q 040173 57 GFTAAIAMGIAGVFTLAWICREVERL-EVLVWVVEVSSQQSLNLKKYVGK 105 (116)
Q Consensus 57 Gfl~sg~~g~~~ls~lsW~~~y~~g~-p~g~~~~d~Ar~R~~d~a~~vg~ 105 (116)
+|..-..|.+-.+--+.-..+..+.. ....+++|.-.+.+.++-+++.+
T Consensus 9 af~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~ 58 (90)
T PF06103_consen 9 AFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNE 58 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34443444444444444455555543 33445555555544444443333
No 17
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=70.84 E-value=30 Score=23.48 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040173 14 PLFGMMGFSFLATVTLLLISSPVLLI 39 (116)
Q Consensus 14 ~LL~LaGlTL~gtvigL~vatPL~vi 39 (116)
..|.++|+|+.|...++.+++-+..+
T Consensus 12 ~~Ll~TGvsllgv~aA~~va~~vm~l 37 (65)
T PF09583_consen 12 AMLLVTGVSLLGVLAALAVAFAVMFL 37 (65)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999998888855443
No 18
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=70.04 E-value=16 Score=21.81 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhc
Q 040173 68 GVFTLAWICREVER 81 (116)
Q Consensus 68 ~ls~lsW~~~y~~g 81 (116)
.+..+.=+|+|+..
T Consensus 17 ~l~~~p~i~~~i~~ 30 (53)
T PF01484_consen 17 CLITVPSIYNDIQN 30 (53)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455665543
No 19
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=68.76 E-value=46 Score=24.79 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=7.4
Q ss_pred HHHHHHHhhhHHHHhhHHH
Q 040173 27 VTLLLISSPVLLIFSPLLV 45 (116)
Q Consensus 27 vigL~vatPL~vifSPVlV 45 (116)
++++.++.+. ++++|+..
T Consensus 107 ~~~~~i~~~~-~i~~~~~l 124 (181)
T PF08006_consen 107 VLALIIAVIA-FILSGIIL 124 (181)
T ss_pred HHHHHHHHHH-HHHHHHHH
Confidence 4444444333 34444443
No 20
>PRK00523 hypothetical protein; Provisional
Probab=68.23 E-value=30 Score=23.86 Aligned_cols=34 Identities=3% Similarity=0.053 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhcccccccchHHHHHhhHhHHHHHhHHHHH
Q 040173 70 FTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 70 s~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
-+--|+-||++..|+-.+ +-+..+-.++|+|.-|
T Consensus 25 iark~~~k~l~~NPpine------~mir~M~~QMGqKPSe 58 (72)
T PRK00523 25 VSKKMFKKQIRENPPITE------NMIRAMYMQMGRKPSE 58 (72)
T ss_pred HHHHHHHHHHHHCcCCCH------HHHHHHHHHhCCCccH
Confidence 345677888887765544 2345556666666544
No 21
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=67.98 E-value=51 Score=25.00 Aligned_cols=13 Identities=15% Similarity=-0.038 Sum_probs=5.9
Q ss_pred hHHHHHhhHhHHH
Q 040173 89 VEVSSQQSLNLKK 101 (116)
Q Consensus 89 ~d~Ar~R~~d~a~ 101 (116)
.++.|+.+.+..+
T Consensus 70 ~~~~~~~l~ea~~ 82 (199)
T PF10112_consen 70 YEYIREILEEAKE 82 (199)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555544433
No 22
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=66.78 E-value=23 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=19.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 040173 53 GALTGFTAAI-AMGIAGVFTLAWICREVERL 82 (116)
Q Consensus 53 l~~~Gfl~sg-~~g~~~ls~lsW~~~y~~g~ 82 (116)
..+.|++.+. ..|+..-..++|.||+++..
T Consensus 29 ~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~ 59 (95)
T PF07178_consen 29 LFVIGILSGHFLIGLILGIVLWWGYRKFKKG 59 (95)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcc
Confidence 3444555555 35555566788999999876
No 23
>PRK15100 amino acid ABC transporter permease; Provisional
Probab=66.45 E-value=56 Score=24.92 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhcc--cccccchHHHHH
Q 040173 70 FTLAWICREVERL--EVLVWVVEVSSQ 94 (116)
Q Consensus 70 s~lsW~~~y~~g~--p~g~~~~d~Ar~ 94 (116)
.....+++-+|.. ...+++.|.||.
T Consensus 98 ~~~p~~~~~~~~~l~~i~~~~~eAA~~ 124 (220)
T PRK15100 98 NTAAYAAETLRAAISSIDKGQWEAAAS 124 (220)
T ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 3334445555554 344567777774
No 24
>PRK01844 hypothetical protein; Provisional
Probab=64.59 E-value=38 Score=23.30 Aligned_cols=34 Identities=6% Similarity=0.067 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhcccccccchHHHHHhhHhHHHHHhHHHHH
Q 040173 70 FTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 70 s~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
-+--|+-||++..|+-.+ +-+..+-.++|+|.-|
T Consensus 24 ~ark~~~k~lk~NPpine------~mir~Mm~QMGqkPSe 57 (72)
T PRK01844 24 IARKYMMNYLQKNPPINE------QMLKMMMMQMGQKPSQ 57 (72)
T ss_pred HHHHHHHHHHHHCCCCCH------HHHHHHHHHhCCCccH
Confidence 345678888888765554 2344555666666544
No 25
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=64.21 E-value=45 Score=23.03 Aligned_cols=39 Identities=10% Similarity=-0.085 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHhhHhHHHHHhH
Q 040173 64 MGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGK 105 (116)
Q Consensus 64 ~g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~~vg~ 105 (116)
+.+.+.-...|..|..++++ ..+++.++.+++-.+..+|
T Consensus 82 ~l~la~i~~~~~~~~l~~~~---~~~~~t~~~l~~d~~~lk~ 120 (121)
T PF07332_consen 82 YLLLALILLLIGRRRLRRAP---PPFEETIAELKEDIAALKE 120 (121)
T ss_pred HHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhc
Confidence 33444455666777776542 2344444555444444443
No 26
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=64.04 E-value=77 Score=29.32 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 040173 23 FLATVTLLLISSPVLLIF 40 (116)
Q Consensus 23 L~gtvigL~vatPL~vif 40 (116)
+.||++|.+++.+++.++
T Consensus 434 i~GTl~G~llg~~l~~l~ 451 (701)
T TIGR01667 434 IIGTVVGLVIGVALHFLI 451 (701)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 468888888887765443
No 27
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=63.18 E-value=17 Score=23.73 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 040173 56 TGFTAAIAMGIA 67 (116)
Q Consensus 56 ~Gfl~sg~~g~~ 67 (116)
.||+.+++.|.+
T Consensus 3 ~g~l~Ga~~Ga~ 14 (74)
T PF12732_consen 3 LGFLAGAAAGAA 14 (74)
T ss_pred HHHHHHHHHHHH
Confidence 355555555544
No 28
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=63.04 E-value=8.6 Score=26.05 Aligned_cols=25 Identities=0% Similarity=0.013 Sum_probs=13.6
Q ss_pred cchHHHHHhhHhHHHHHhHHHHHhh
Q 040173 87 WVVEVSSQQSLNLKKYVGKRKEKKQ 111 (116)
Q Consensus 87 ~~~d~Ar~R~~d~a~~vg~k~~e~g 111 (116)
+++|++|.|..|..+.+.+++++..
T Consensus 38 ~~~~~a~~~~~~~~~~~~~~~~~~~ 62 (94)
T PF05957_consen 38 EALDDARDRAEDAADQAREQAREAA 62 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555443
No 29
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=62.66 E-value=95 Score=28.89 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhHHHHhh
Q 040173 23 FLATVTLLLISSPVLLIFSP 42 (116)
Q Consensus 23 L~gtvigL~vatPL~vifSP 42 (116)
+.||++|.+++.+++.++-+
T Consensus 432 i~GTllG~~lg~~ll~l~p~ 451 (704)
T TIGR01666 432 IIGTLLGVVIGSPLLYFNPS 451 (704)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45888888888887665533
No 30
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=61.93 E-value=48 Score=22.61 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcc---cccccchHHHH-HhhHhHHHHHhHHHH
Q 040173 71 TLAWICREVERL---EVLVWVVEVSS-QQSLNLKKYVGKRKE 108 (116)
Q Consensus 71 ~lsW~~~y~~g~---p~g~~~~d~Ar-~R~~d~a~~vg~k~~ 108 (116)
+..|++.|.+.+ ..+-++-|+.+ +.+.+.|+.+.||-+
T Consensus 18 ap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~ 59 (75)
T TIGR02976 18 APLWLILHYRSKRKTAASLSTDDQALLQELYAKADRLEERID 59 (75)
T ss_pred HHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888877755 22222233322 345566677777654
No 31
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=61.37 E-value=40 Score=21.93 Aligned_cols=16 Identities=13% Similarity=-0.082 Sum_probs=7.2
Q ss_pred cchHHHHHhhHhHHHH
Q 040173 87 WVVEVSSQQSLNLKKY 102 (116)
Q Consensus 87 ~~~d~Ar~R~~d~a~~ 102 (116)
++.+..+.+..|...+
T Consensus 33 ~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 33 DKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 32
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=60.19 E-value=51 Score=22.31 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040173 14 PLFGMMGFSFLATVTLLLISSPVLLI 39 (116)
Q Consensus 14 ~LL~LaGlTL~gtvigL~vatPL~vi 39 (116)
..|.++|+|+.|...++.+++-...+
T Consensus 11 ~~Ll~TGisllgv~aA~~va~~vm~l 36 (64)
T TIGR02975 11 VMLMVTGISLLGVLAALGVAVLFMAL 36 (64)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34778899999988888887765443
No 33
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=59.58 E-value=11 Score=25.57 Aligned_cols=28 Identities=7% Similarity=-0.049 Sum_probs=20.4
Q ss_pred cccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 85 LVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 85 g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
..+..+.+|+|+.+..++..++.+|..+
T Consensus 25 ~~~~~~~~r~~~~~~~~~a~~~~~~~~~ 52 (94)
T PF05957_consen 25 AGEKADEARDRAEEALDDARDRAEDAAD 52 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888777777777777654
No 34
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=58.46 E-value=88 Score=24.50 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcccc-----cccchHHHHHhhHhHHHHHhHHHHH
Q 040173 68 GVFTLAWICREVERLEV-----LVWVVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 68 ~ls~lsW~~~y~~g~p~-----g~~~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
++...+|+.+.+|.+|= =.+|+.+.-+||..+=+.++..++|
T Consensus 59 ~~~~~~~~l~~~k~~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~ 105 (165)
T PF11286_consen 59 GLLLTSALLRQLKTHPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQ 105 (165)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556777888887642 2367888888998888888887765
No 35
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=58.12 E-value=1.1e+02 Score=27.04 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHhhhHHHHhhHH--HHHHHHHHHHHHHHHH
Q 040173 29 LLLISSPVLLIFSPLL--VSAVFVLVGALTGFTA 60 (116)
Q Consensus 29 gL~vatPL~vifSPVl--VPaai~~~l~~~Gfl~ 60 (116)
-+.+..|++++|+-+. +|+++.+--.+.++.+
T Consensus 229 ~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwt 262 (429)
T PRK00247 229 VMAILAPIFPLSLGLTGPFPTAIALYWVANNLWT 262 (429)
T ss_pred HHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHH
Confidence 3446688777665544 6999998888877766
No 36
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=55.23 E-value=18 Score=21.75 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=7.6
Q ss_pred HHHHHhhHhHHHHHhHHHH
Q 040173 90 EVSSQQSLNLKKYVGKRKE 108 (116)
Q Consensus 90 d~Ar~R~~d~a~~vg~k~~ 108 (116)
|.++.+..|+..++.||++
T Consensus 13 d~a~~ka~e~kd~a~eKa~ 31 (44)
T PF02987_consen 13 DAAKEKAGEAKDAAAEKAE 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 37
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=54.47 E-value=20 Score=20.69 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=19.7
Q ss_pred cchHHHHHhhHhHHHHHhHHHHHh
Q 040173 87 WVVEVSSQQSLNLKKYVGKRKEKK 110 (116)
Q Consensus 87 ~~~d~Ar~R~~d~a~~vg~k~~e~ 110 (116)
|-+..+++++.+..+..|||-||.
T Consensus 2 ~~lrk~~eKigeklkkIGQkIKDf 25 (28)
T PF12153_consen 2 DFLRKGGEKIGEKLKKIGQKIKDF 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999998875
No 38
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=53.43 E-value=1.5e+02 Score=25.74 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhHHHH--hhHHHHHHHHHHHHHHHHHHH
Q 040173 22 SFLATVTLLLISSPVLLIF--SPLLVSAVFVLVGALTGFTAA 61 (116)
Q Consensus 22 TL~gtvigL~vatPL~vif--SPVlVPaai~~~l~~~Gfl~s 61 (116)
=+.||++|-+++.=+...| +|.+.-..+.+.+....+++.
T Consensus 52 R~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~ 93 (650)
T PF04632_consen 52 RLIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSL 93 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655554444 777766666555555555443
No 39
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=52.30 E-value=70 Score=24.32 Aligned_cols=57 Identities=16% Similarity=0.037 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040173 23 FLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL 82 (116)
Q Consensus 23 L~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~ 82 (116)
|.|||+|++.+.--+=.. .--=|..+.-++..+=..+ ++|+..--.-.-.|||++++
T Consensus 70 LLGTV~GmI~~F~~lg~~-g~~~~~~la~GIs~ALitT--a~GL~VAIpali~yn~l~~r 126 (138)
T TIGR02805 70 LLGTVIGIMVTFYQMGHG-GGIDPSVIMLGLSLALKAT--ALGLLVAIPSLVFYNALLRK 126 (138)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 467888887765443221 0112444444443332222 33443333334578998775
No 40
>PRK10404 hypothetical protein; Provisional
Probab=52.09 E-value=17 Score=25.87 Aligned_cols=27 Identities=4% Similarity=-0.124 Sum_probs=17.9
Q ss_pred ccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 86 VWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 86 ~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
.++++.+|.|+.|..+.+.+|+|+..+
T Consensus 44 ~~~L~~ar~~l~~~~~~~~~~~k~aa~ 70 (101)
T PRK10404 44 EKALDDVKKRVSQASDSYYYRAKQAVY 70 (101)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356777777777766666666666543
No 41
>PRK01345 heat shock protein HtpX; Provisional
Probab=49.91 E-value=1.5e+02 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.017 Sum_probs=15.7
Q ss_pred cccccchHHHHHhhHhHHHHHhHHHHH
Q 040173 83 EVLVWVVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 83 p~g~~~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
+..+++-++-++++.+.++..+-+..+
T Consensus 60 ~v~~~~~p~L~~~v~~La~~agi~~p~ 86 (317)
T PRK01345 60 EVDERSAPELYRMVRDLARRAGLPMPK 86 (317)
T ss_pred ECCcccCHHHHHHHHHHHHHcCCCCCc
Confidence 455555556666677777666554433
No 42
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=49.65 E-value=61 Score=21.76 Aligned_cols=33 Identities=3% Similarity=0.096 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcccccccchHHHHHhhHhHHHHHhHHHHH
Q 040173 71 TLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 71 ~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
+--++-||++..|+-.+ +-+..+..++|+|.-|
T Consensus 18 ar~~~~k~l~~NPpine------~mir~M~~QMG~kpSe 50 (64)
T PF03672_consen 18 ARKYMEKQLKENPPINE------KMIRAMMMQMGRKPSE 50 (64)
T ss_pred HHHHHHHHHHHCCCCCH------HHHHHHHHHhCCCccH
Confidence 44566778776665444 3355666667776654
No 43
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=48.95 E-value=1.2e+02 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcc--cccccchHHHHH
Q 040173 69 VFTLAWICREVERL--EVLVWVVEVSSQ 94 (116)
Q Consensus 69 ls~lsW~~~y~~g~--p~g~~~~d~Ar~ 94 (116)
+....+++|.++.. ...+|..|.||.
T Consensus 135 i~~~~~~~~~~~~~l~~i~~~~~eaa~~ 162 (250)
T TIGR01097 135 FHTVGFLGKLFAEAIEEVDPGPVEALRA 162 (250)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 44556667766654 455566666663
No 44
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=48.10 E-value=1e+02 Score=22.16 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhcc
Q 040173 69 VFTLAWICREVERL 82 (116)
Q Consensus 69 ls~lsW~~~y~~g~ 82 (116)
+-.+-|+.++++..
T Consensus 35 ~~~~~~i~~~l~~~ 48 (121)
T PF06695_consen 35 LLFLDKILKWLKRK 48 (121)
T ss_pred HHHHHHHHHHHHHh
Confidence 44556666666554
No 45
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=45.23 E-value=75 Score=22.85 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=28.5
Q ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040173 41 SPLLVSAVFV--LVGALTGFTAAIAMGIAGVFTLAWICREVER 81 (116)
Q Consensus 41 SPVlVPaai~--~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g 81 (116)
.|-=+++..+ +.+...||..-.-+.+..+....|.|-..-|
T Consensus 55 rpwa~~~g~~lQv~~i~~g~v~p~m~vvG~iF~~~W~~~l~lg 97 (107)
T PF14017_consen 55 RPWAYWLGWVLQVLLIAGGFVHPAMFVVGVIFAAVWWYALYLG 97 (107)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454443 3466677777777888888999999987655
No 46
>PRK04897 heat shock protein HtpX; Provisional
Probab=44.58 E-value=1.3e+02 Score=24.63 Aligned_cols=39 Identities=8% Similarity=-0.107 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcc-cccccchHHHHHhhHhHHHHHhHHHH
Q 040173 70 FTLAWICREVERL-EVLVWVVEVSSQQSLNLKKYVGKRKE 108 (116)
Q Consensus 70 s~lsW~~~y~~g~-p~g~~~~d~Ar~R~~d~a~~vg~k~~ 108 (116)
..-.|+.....+. |..++|-.+-++++.|.++..|-...
T Consensus 59 ~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~la~~~gip~p 98 (298)
T PRK04897 59 FQSTNVVMSMNHAREVTEEEAPELWHIVEDMAMVAQIPMP 98 (298)
T ss_pred HhhHHHHHHhCCCEECChhhhHHHHHHHHHHHHHcCCCCC
Confidence 3344555554444 66666666667777777766654433
No 47
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=44.57 E-value=46 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhHHHHHHHH
Q 040173 20 GFSFLATVTLLLISSPVLLIFSPLLVSAVFV 50 (116)
Q Consensus 20 GlTL~gtvigL~vatPL~vifSPVlVPaai~ 50 (116)
++...++++|-.++.+++++++|.+-|.+..
T Consensus 93 ~~a~~~S~~G~~is~~~l~~~a~~la~~a~~ 123 (419)
T PF01970_consen 93 RLAAIGSFIGGLISAILLILFAPPLAPFALK 123 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999887643
No 48
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=44.41 E-value=1.6e+02 Score=23.41 Aligned_cols=25 Identities=16% Similarity=-0.100 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040173 53 GALTGFTAAIAMGIAGVFTLAWICR 77 (116)
Q Consensus 53 l~~~Gfl~sg~~g~~~ls~lsW~~~ 77 (116)
+.-.+.+..|+.+-..+|.+.|-.+
T Consensus 72 ~~~~~l~~~Gglwy~~lsl~~~~l~ 96 (284)
T PF12805_consen 72 LEHALLFLAGGLWYLLLSLLWWPLR 96 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444566677777777777777654
No 49
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Probab=44.01 E-value=1.3e+02 Score=22.34 Aligned_cols=29 Identities=10% Similarity=-0.161 Sum_probs=17.2
Q ss_pred HHHHHHHHH--HHHHhhcc--cccccchHHHHH
Q 040173 66 IAGVFTLAW--ICREVERL--EVLVWVVEVSSQ 94 (116)
Q Consensus 66 ~~~ls~lsW--~~~y~~g~--p~g~~~~d~Ar~ 94 (116)
+-+++...+ +.+.+|+. ...+|+.|.||.
T Consensus 90 iial~l~~~~~~~~~~r~~l~~v~~~~~eaA~a 122 (212)
T TIGR03003 90 VLGLGLHYATYAAEVYRAGIEAVPRGQWEAATA 122 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 344444443 44566665 556788888874
No 50
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=43.19 E-value=51 Score=27.85 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHhh---HhHHHHHhHHHHH
Q 040173 59 TAAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQS---LNLKKYVGKRKEK 109 (116)
Q Consensus 59 l~sg~~g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~---~d~a~~vg~k~~e 109 (116)
+-+|-.|+.-+++-.|.|=| ++.++||+.- +|.-+++.+|.++
T Consensus 21 LvGGp~Gl~ml~AgA~Y~~y--------Q~~EQAr~~A~~fA~~ld~~~~kl~~ 66 (301)
T PF06120_consen 21 LVGGPPGLVMLGAGAWYYFY--------QNAEQARQEAIEFADSLDELKEKLKE 66 (301)
T ss_pred hhcchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 34555666667777786655 3455555432 3333444455444
No 51
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=42.41 E-value=93 Score=21.67 Aligned_cols=30 Identities=3% Similarity=-0.146 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhcc-cccccchHHHHHhhH
Q 040173 68 GVFTLAWICREVERL-EVLVWVVEVSSQQSL 97 (116)
Q Consensus 68 ~ls~lsW~~~y~~g~-p~g~~~~d~Ar~R~~ 97 (116)
.+.+..|.++|+++. ....+++|.+.+.+.
T Consensus 10 ii~~~~~~~~~l~~~~~~i~~~l~~i~~~i~ 40 (121)
T PF14276_consen 10 IIALSIFSNNYLNNSTDSIEEQLEQIEEAIE 40 (121)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 456778899999886 556677777777665
No 52
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=41.32 E-value=76 Score=18.78 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHhhHhHHHHHhHHHHH
Q 040173 60 AAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 60 ~sg~~g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
+.++..+.+++.++.++-- |.--+++++-++.+.+--++-++++++
T Consensus 3 a~~a~~~s~~ai~~~l~~~----p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 3 AYGAIVVSTVAILSCLITV----PSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665543 566677888888887766667777765
No 53
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=40.23 E-value=1.1e+02 Score=20.48 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 040173 65 GIAGVFTLAWICREVERL 82 (116)
Q Consensus 65 g~~~ls~lsW~~~y~~g~ 82 (116)
.+..++.+.|+..-++|+
T Consensus 25 ~~~~~~~~q~~~~L~tg~ 42 (80)
T PF14333_consen 25 VLGVLVLIQWFAILFTGR 42 (80)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 445678899999999998
No 54
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=39.55 E-value=1.1e+02 Score=25.76 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhc
Q 040173 70 FTLAWICREVER 81 (116)
Q Consensus 70 s~lsW~~~y~~g 81 (116)
-...|.|+|++-
T Consensus 234 ~~~~~~~qy~~~ 245 (255)
T TIGR01597 234 YWSIWRFQYVKL 245 (255)
T ss_pred HHHHHHHHHHHH
Confidence 455788888753
No 55
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=37.95 E-value=11 Score=32.31 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhcc
Q 040173 70 FTLAWICREVERL 82 (116)
Q Consensus 70 s~lsW~~~y~~g~ 82 (116)
-++.|+|||++.+
T Consensus 314 ~~~~~~~~~~~~~ 326 (361)
T PF12259_consen 314 ISLAWLYRTFRRR 326 (361)
T ss_pred HHHHhheeehHHH
Confidence 3667999999875
No 56
>COG2212 MnhF Multisubunit Na+/H+ antiporter, MnhF subunit [Inorganic ion transport and metabolism]
Probab=37.02 E-value=46 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccch
Q 040173 63 AMGIAGVFTLAWICREVERLEVLVWVV 89 (116)
Q Consensus 63 ~~g~~~ls~lsW~~~y~~g~p~g~~~~ 89 (116)
++.+-+++.+.-+||-++| |..+||+
T Consensus 10 al~i~~la~~l~~yRvi~G-Pt~~DRv 35 (89)
T COG2212 10 ALIILGLALLLALYRVIRG-PTLPDRV 35 (89)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCccchh
Confidence 3445567888889999999 7777765
No 57
>PF08828 DSX_dimer: Doublesex dimerisation domain; InterPro: IPR014932 Doublesex (DSX) is a transcription factor that regulates somatic sexual differences in Drosophila. The structure has revealed a novel dimeric arrangement of ubiquitin-associated folds that has not previously been identified in a transcription factor []. ; PDB: 1ZV1_B 2JZ0_A 2JZ1_B.
Probab=36.76 E-value=31 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=9.4
Q ss_pred chHHHHHhhHhHHHHHhHHHHH
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
.+|.|.|||.|....+.++.++
T Consensus 37 D~eeA~rrI~E~~~~v~~~~~~ 58 (62)
T PF08828_consen 37 DVEEASRRIDEAKNVVNEYSRQ 58 (62)
T ss_dssp -HHHHHHHHHH-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988888877764
No 58
>PRK07948 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=36.67 E-value=41 Score=23.33 Aligned_cols=24 Identities=4% Similarity=-0.151 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhcccccccchHH
Q 040173 67 AGVFTLAWICREVERLEVLVWVVEV 91 (116)
Q Consensus 67 ~~ls~lsW~~~y~~g~p~g~~~~d~ 91 (116)
-.++.+.-+||-+|| |..+||+=.
T Consensus 12 l~~a~~l~~~Rli~G-Pt~~DRvvA 35 (86)
T PRK07948 12 LSLAAILTTYRILAG-PNSLDRLVA 35 (86)
T ss_pred HHHHHHHHHHHHhcC-cChhhHHHH
Confidence 345666678999999 887887643
No 59
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=36.50 E-value=31 Score=25.47 Aligned_cols=28 Identities=39% Similarity=0.669 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhHHHH
Q 040173 19 MGFSFLATVTLLLISSPVLLIFSPLLVS 46 (116)
Q Consensus 19 aGlTL~gtvigL~vatPL~vifSPVlVP 46 (116)
-|+||.--+|-|.+-+-|+++|-|=+.-
T Consensus 12 kgFTLvEMLiVLlIISiLlLl~iPNltK 39 (107)
T COG4537 12 KGFTLVEMLIVLLIISILLLLFIPNLTK 39 (107)
T ss_pred ccccHHHHHHHHHHHHHHHHHHccchhh
Confidence 4889999999999999999999997764
No 60
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=36.41 E-value=2.2e+02 Score=22.61 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 040173 20 GFSFLATVTLLLISSPVLLIF 40 (116)
Q Consensus 20 GlTL~gtvigL~vatPL~vif 40 (116)
++++.++.+++.++.|+=+..
T Consensus 93 ~~~~~a~~ia~~lgi~lgi~~ 113 (267)
T TIGR03416 93 ALVLSATVVCMVIGVPLGIAA 113 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666655443
No 61
>COG2148 WcaJ Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]
Probab=36.12 E-value=44 Score=27.23 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=16.2
Q ss_pred HHHhhhHHHHhhHHHHHHHHHHH
Q 040173 31 LISSPVLLIFSPLLVSAVFVLVG 53 (116)
Q Consensus 31 ~vatPL~vifSPVlVPaai~~~l 53 (116)
+++.-.+++|||++.+.++++-+
T Consensus 47 ~~s~~~L~v~sP~~l~iai~ikl 69 (226)
T COG2148 47 VLALIGLLLLSPVMLIIALAIKL 69 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555668888888887776644
No 62
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=35.75 E-value=3.7e+02 Score=25.03 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH--hhHHHHHHHHHHHH
Q 040173 14 PLFGMMGFSFLATVTLLLISSPVLLIF--SPLLVSAVFVLVGA 54 (116)
Q Consensus 14 ~LL~LaGlTL~gtvigL~vatPL~vif--SPVlVPaai~~~l~ 54 (116)
..+-=+---+.||++|-+++.=+...| .|++.=.++.+.+.
T Consensus 60 ~v~~K~~~Ri~GTliGa~~~l~l~~~f~~~p~l~~l~l~lWig 102 (652)
T PRK10631 60 AIRYRGMLRIIGTFIGCIAALVIIIATIRAPLLMILLCCIWAG 102 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 333334445677777777776666666 47776555444433
No 63
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=35.75 E-value=1.3e+02 Score=21.92 Aligned_cols=61 Identities=15% Similarity=-0.032 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccchHHHHHhhHh
Q 040173 24 LATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWIC-REVERLEVLVWVVEVSSQQSLN 98 (116)
Q Consensus 24 ~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~-~y~~g~p~g~~~~d~Ar~R~~d 98 (116)
.|...|+.+..==|++-|++.--+= -++.+|+ ..|..+|-| ||-|... -++++.+++.+++
T Consensus 46 ~Gi~~G~~vG~~~fl~~~~~~~A~n----wavgsF~--------l~s~~~we~Cr~~r~~~--~~~~~~~~e~~~~ 107 (118)
T PF12597_consen 46 YGIAGGFGVGGLRFLFTSNPRKAAN----WAVGSFF--------LGSLGSWEYCRYNRRKE--RQQMKRAVEAMQE 107 (118)
T ss_pred HHHHHHHHHHhhhhcccCCCccchh----hhhHHHH--------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3444444444445666666554322 2222222 246667765 4443321 2345555555544
No 64
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=35.66 E-value=52 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 040173 20 GFSFLATVTLLLISSPVLLIF 40 (116)
Q Consensus 20 GlTL~gtvigL~vatPL~vif 40 (116)
+..|..|+.||+++.|.+++.
T Consensus 100 ~~Al~tT~~GL~vai~~~~~~ 120 (139)
T PF01618_consen 100 SVALITTAYGLVVAIPALPFY 120 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887544
No 65
>COG4241 Predicted membrane protein [Function unknown]
Probab=35.37 E-value=62 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHh-------hcccccccchHHHHHhhHhH
Q 040173 67 AGVFTLAWICREV-------ERLEVLVWVVEVSSQQSLNL 99 (116)
Q Consensus 67 ~~ls~lsW~~~y~-------~g~p~g~~~~d~Ar~R~~d~ 99 (116)
+..++.+|.+|+. |+-++.+|-+.|.|++++|.
T Consensus 104 ~s~~amiwi~~~yF~ls~~~~~inpv~~a~~~~Rqsl~~a 143 (314)
T COG4241 104 ASTAAMIWIINFYFPLSIVIRIINPVDDAVVYLRQSLNAA 143 (314)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCCcHHHHHHHHhhhHHH
Confidence 3678999999753 22267788899999999764
No 66
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=35.35 E-value=57 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhcccccccchHH
Q 040173 66 IAGVFTLAWICREVERLEVLVWVVEV 91 (116)
Q Consensus 66 ~~~ls~lsW~~~y~~g~p~g~~~~d~ 91 (116)
+-.++.+..+||-+|| |..+||+=.
T Consensus 16 ~l~~a~~l~l~Rlv~G-Pt~~DRivA 40 (100)
T PRK12657 16 IFGIALIICLFRLIKG-PTTADRVVT 40 (100)
T ss_pred HHHHHHHHHHHHHHcC-ccHHHHHHH
Confidence 3456667778999999 777787643
No 67
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=35.31 E-value=81 Score=23.93 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=29.5
Q ss_pred HHhh-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Q 040173 39 IFSP-LLVSAVFVLVGALTGF-------TAAIAMGIAGVFTLAWICREVERL 82 (116)
Q Consensus 39 ifSP-VlVPaai~~~l~~~Gf-------l~sg~~g~~~ls~lsW~~~y~~g~ 82 (116)
.||| =+=|..+..+.+..++ +..-+.++...+..-|.+.|.||.
T Consensus 83 fFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~~~~i~~~~G~vfEy~rg~ 134 (137)
T PF12270_consen 83 FFSPHSWWPLVLAAAAALVFLGLAFGWWLILIGAVLLIVAVVGWVFEYYRGP 134 (137)
T ss_pred cCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCc
Confidence 5787 5667666555544433 334455667778889999999884
No 68
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.18 E-value=41 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=22.8
Q ss_pred cccccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 83 EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 83 p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
.....|+|+.-..++++.+|+.+|-..++.
T Consensus 46 ~~v~kql~~vs~~l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888888888888776654
No 69
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=33.99 E-value=1.4e+02 Score=21.19 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=16.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 040173 55 LTGFTAAIAM-GIAGVFTLAWICREVERL 82 (116)
Q Consensus 55 ~~Gfl~sg~~-g~~~ls~lsW~~~y~~g~ 82 (116)
+.|++++-.+ |+..-..+.|.+|+++..
T Consensus 37 ~~Gi~~~~~l~g~i~g~~~~~~~r~lK~g 65 (101)
T PRK13707 37 GWGITTSKYLFGIIAAVLVWFGIRKLKKG 65 (101)
T ss_pred HHHHHHchHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555333 333334567789998865
No 70
>PF02397 Bac_transf: Bacterial sugar transferase; InterPro: IPR003362 This entry represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways. Examples include galactosyl-P-P-undecaprenol synthetase (2.7.8.6 from EC), which transfers galatose-1-phosphate to the lipid precursor undecaprenol phosphate in the first steps of O-polysaccharide biosynthesis; UDP-galactose-lipid carrier transferase, which is involved in the biosynthesis of amylovoran; and galactosyl transferase CpsD, which is essential for assembly of the group B Streptococci (GBS) type III capsular polysaccharide.
Probab=33.60 E-value=61 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHH
Q 040173 30 LLISSPVLLIFSPLLVSAVFVLVG 53 (116)
Q Consensus 30 L~vatPL~vifSPVlVPaai~~~l 53 (116)
.+++..+++++||++...++.+-+
T Consensus 6 i~~a~~~li~~~Pl~l~iai~i~l 29 (187)
T PF02397_consen 6 IVLALLLLILLSPLFLIIAILIKL 29 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888877666655
No 71
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=33.08 E-value=1.4e+02 Score=19.51 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhc
Q 040173 68 GVFTLAWICREVER 81 (116)
Q Consensus 68 ~ls~lsW~~~y~~g 81 (116)
+-....|+|.-+-|
T Consensus 39 ~YGF~VWm~Q~~~G 52 (56)
T PF06796_consen 39 GYGFIVWMYQIFFG 52 (56)
T ss_pred HHHHHHHHHHHHcC
Confidence 34556799999877
No 72
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=32.64 E-value=55 Score=25.62 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 040173 20 GFSFLATVTLLLISSPVLLI 39 (116)
Q Consensus 20 GlTL~gtvigL~vatPL~vi 39 (116)
+..|..|++||++|.|-.++
T Consensus 164 seAL~aTA~GL~vAIPAvi~ 183 (216)
T COG0811 164 SEALIATAIGLFVAIPAVVA 183 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999887554
No 73
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=32.43 E-value=50 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=21.0
Q ss_pred ccchHHHHHhhHh-HHHHHhHHHHHhhhhh
Q 040173 86 VWVVEVSSQQSLN-LKKYVGKRKEKKQQLN 114 (116)
Q Consensus 86 ~~~~d~Ar~R~~d-~a~~vg~k~~e~g~~~ 114 (116)
.++++|||+++.+ .++..-+|..+..++.
T Consensus 93 ~ehvehAr~Qlaeakarv~a~r~~q~a~k~ 122 (208)
T COG3109 93 EEHVEHARKQLAEAKARVQAQRAEQQAKKR 122 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788999999987 4556667776666654
No 74
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.30 E-value=1.7e+02 Score=23.87 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 040173 16 FGMMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60 (116)
Q Consensus 16 L~LaGlTL~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~ 60 (116)
+.+.+....+.++|+++-.+ +.+.|+=+++++++++.+.+--+
T Consensus 33 ~a~l~~~~v~v~ig~l~~~~--~~~~i~gi~~g~l~am~vl~rra 75 (224)
T PF13829_consen 33 GAFLGPIAVFVLIGLLFGSW--WYWLIIGILLGLLAAMIVLSRRA 75 (224)
T ss_pred HHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777766643 55666666666666666555444
No 75
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=31.19 E-value=37 Score=23.54 Aligned_cols=19 Identities=16% Similarity=-0.100 Sum_probs=14.3
Q ss_pred ccchHHHHHhhHhHHHHHh
Q 040173 86 VWVVEVSSQQSLNLKKYVG 104 (116)
Q Consensus 86 ~~~~d~Ar~R~~d~a~~vg 104 (116)
.|.+|+|-+||.+.|++.|
T Consensus 24 ~~d~d~Al~eM~e~A~~lG 42 (74)
T TIGR03884 24 SDNVDEIVENLREKVKAKG 42 (74)
T ss_pred cCCHHHHHHHHHHHHHHcC
Confidence 4679999999977665544
No 76
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=31.12 E-value=2.3e+02 Score=21.31 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=10.9
Q ss_pred HHHHhhHHHHHHHHHHH
Q 040173 37 LLIFSPLLVSAVFVLVG 53 (116)
Q Consensus 37 ~vifSPVlVPaai~~~l 53 (116)
.+++.|..+|..+....
T Consensus 49 ~~~~ip~~iP~~v~~~~ 65 (229)
T PRK09421 49 SLLHLPLVLPPVVTGYL 65 (229)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 45677888887665433
No 77
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=31.08 E-value=1.8e+02 Score=19.99 Aligned_cols=7 Identities=0% Similarity=-0.311 Sum_probs=2.6
Q ss_pred HhHHHHH
Q 040173 97 LNLKKYV 103 (116)
Q Consensus 97 ~d~a~~v 103 (116)
+++.+++
T Consensus 105 ~~t~~~l 111 (121)
T PF07332_consen 105 EETIAEL 111 (121)
T ss_pred HHHHHHH
Confidence 3333333
No 78
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.99 E-value=42 Score=22.23 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhcccccccchHHHHHhhHhHHHHHhHH
Q 040173 69 VFTLAWICREVERLEVLVWVVEVSSQQSLNLKKYVGKR 106 (116)
Q Consensus 69 ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~~vg~k 106 (116)
++...|+|| |....+.|+|++-+-+..++..++
T Consensus 23 iavi~~ayr-----~~~K~~~d~aa~~~l~l~Dd~q~~ 55 (60)
T COG4736 23 IAVIYFAYR-----PGKKGEFDEAARGILPLNDDAQDA 55 (60)
T ss_pred HHHHHHHhc-----ccchhhHHHHhccCCCCCcchhhh
Confidence 455566666 344467888887444333333333
No 79
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=30.89 E-value=2.3e+02 Score=22.52 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHh
Q 040173 20 GFSFLATVTLLLISSPVLLIFS 41 (116)
Q Consensus 20 GlTL~gtvigL~vatPL~vifS 41 (116)
|+++++.+++.-+++=+..++-
T Consensus 1 gl~~a~~i~~~w~~~~~~~~~~ 22 (225)
T cd03513 1 GLTLAGLIIAAWLASHVHALFF 22 (225)
T ss_pred ChhHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555544443
No 80
>COG1270 CbiB Cobalamin biosynthesis protein CobD/CbiB [Coenzyme metabolism]
Probab=29.94 E-value=3.5e+02 Score=23.10 Aligned_cols=29 Identities=3% Similarity=-0.006 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcc--cccccchHHHHHhhHhH
Q 040173 71 TLAWICREVERL--EVLVWVVEVSSQQSLNL 99 (116)
Q Consensus 71 ~lsW~~~y~~g~--p~g~~~~d~Ar~R~~d~ 99 (116)
+..-++++.+.. +--.+++|.||++++..
T Consensus 98 a~rsL~~~~~~v~~~L~~gdl~~aR~~ls~i 128 (320)
T COG1270 98 AIRSLADHARKVARALRRGDLEGARRALSMI 128 (320)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567777765 44456799999988743
No 81
>COG1422 Predicted membrane protein [Function unknown]
Probab=29.21 E-value=3.1e+02 Score=22.19 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=10.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 040173 38 LIFSPLLVSAVFVLVGALTGFTA 60 (116)
Q Consensus 38 vifSPVlVPaai~~~l~~~Gfl~ 60 (116)
.+|-|++=|---.+.+.++|.++
T Consensus 35 ~~f~P~i~~~~p~lvilV~avi~ 57 (201)
T COG1422 35 VVFGPLLSPLPPHLVILVAAVIT 57 (201)
T ss_pred HHHhhhccccccHHHHHHHHHHH
Confidence 44555554433334444444443
No 82
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.86 E-value=1.4e+02 Score=21.62 Aligned_cols=25 Identities=20% Similarity=-0.020 Sum_probs=13.8
Q ss_pred HHHHHHhhcc----cccccchHHHHHhhH
Q 040173 73 AWICREVERL----EVLVWVVEVSSQQSL 97 (116)
Q Consensus 73 sW~~~y~~g~----p~g~~~~d~Ar~R~~ 97 (116)
.++.|+..+. ....+++|++|+.+.
T Consensus 14 ~~~~r~~~~~~~~q~~l~~eL~~~k~el~ 42 (128)
T PF06295_consen 14 FLIGRLTSSNQQKQAKLEQELEQAKQELE 42 (128)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 3455555443 233466777777664
No 83
>PRK03072 heat shock protein HtpX; Provisional
Probab=28.71 E-value=3.2e+02 Score=22.20 Aligned_cols=36 Identities=6% Similarity=-0.150 Sum_probs=18.7
Q ss_pred HHHHHHhhcc-cccccchHHHHHhhHhHHHHHhHHHH
Q 040173 73 AWICREVERL-EVLVWVVEVSSQQSLNLKKYVGKRKE 108 (116)
Q Consensus 73 sW~~~y~~g~-p~g~~~~d~Ar~R~~d~a~~vg~k~~ 108 (116)
.|+.+..-|. +..+++-.+-++.+.+.+++.|-+..
T Consensus 52 ~~~~~~~~~~~~v~~~~~p~L~~~v~~la~~~g~p~p 88 (288)
T PRK03072 52 DKLALRAMHAQPVSEVQAPAMYRIVRELSTAARQPMP 88 (288)
T ss_pred HHHHHHhcCCEECChhhhHHHHHHHHHHHHHcCCCCC
Confidence 4444433333 55555544555666666666654433
No 84
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=28.52 E-value=2.1e+02 Score=22.43 Aligned_cols=30 Identities=7% Similarity=-0.045 Sum_probs=21.9
Q ss_pred cccccchHHHHHhhHh---HHHHHhHHHHHhhh
Q 040173 83 EVLVWVVEVSSQQSLN---LKKYVGKRKEKKQQ 112 (116)
Q Consensus 83 p~g~~~~d~Ar~R~~d---~a~~vg~k~~e~g~ 112 (116)
.|-.++.|++++++++ +-.+|+|++.+.-+
T Consensus 58 qPl~~~~~~a~~~l~~~~qll~wvq~~a~~i~~ 90 (178)
T PRK09731 58 QPLSERIEQQETMLQQLVAMNTRLKSAAPDIIA 90 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999988864 44588998877743
No 85
>COG4425 Predicted membrane protein [Function unknown]
Probab=28.34 E-value=1.4e+02 Score=27.62 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040173 18 MMGFSFLATVTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL 82 (116)
Q Consensus 18 LaGlTL~gtvigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~ 82 (116)
+-+++.+|++.|.+..- .=.+|-|.|=.-.+--+..||. .++|-++--.+-|+.+|++..
T Consensus 46 ~~~~s~tG~~~g~vff~---~sLTPSLLPr~~l~qgv~sgf~--~A~Gy~~gv~~~wl~~y~elp 105 (588)
T COG4425 46 LRSLSATGLLMGTVFFW---ASLTPSLLPRPWLFQGVLSGFS--LAAGYGAGVFLHWLWRYLELP 105 (588)
T ss_pred HHhhccchHHHHHHHHH---HhcCccccCchHHHHHHHHHHH--HHhhhHHHHHHHHHHHHhhCC
Confidence 45566677776665432 2346778887776666666764 455555566789999999886
No 86
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=27.74 E-value=2.4e+02 Score=20.65 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcccccccchHHHHHh
Q 040173 70 FTLAWICREVERLEVLVWVVEVSSQQ 95 (116)
Q Consensus 70 s~lsW~~~y~~g~p~g~~~~d~Ar~R 95 (116)
..+.|+..|+-+.. ..+|-|.++|
T Consensus 45 glvgW~~sYlfRV~--t~~MTy~~Q~ 68 (104)
T PF11460_consen 45 GLVGWVSSYLFRVV--TGKMTYMQQR 68 (104)
T ss_pred HHHHHHhHHHhhhc--cCCCcHHHHH
Confidence 44889999987642 2345555543
No 87
>PRK12604 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=27.04 E-value=64 Score=22.25 Aligned_cols=23 Identities=17% Similarity=0.018 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhcccccccchH
Q 040173 67 AGVFTLAWICREVERLEVLVWVVE 90 (116)
Q Consensus 67 ~~ls~lsW~~~y~~g~p~g~~~~d 90 (116)
-+++.+.-+||-+|| |..+||+=
T Consensus 11 l~~~~~l~~~R~i~G-Pt~~DRvv 33 (84)
T PRK12604 11 IAIATLLSMYRVFRG-PTTVDRLV 33 (84)
T ss_pred HHHHHHHHHHHhhcC-ccHHHHHH
Confidence 345666668999999 77777653
No 88
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.21 E-value=2.7e+02 Score=20.59 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=8.3
Q ss_pred HHhhhHHHHhhHHHH
Q 040173 32 ISSPVLLIFSPLLVS 46 (116)
Q Consensus 32 vatPL~vifSPVlVP 46 (116)
+.+|++++++.+...
T Consensus 118 i~~~~~l~~~~~~~~ 132 (181)
T PF08006_consen 118 ILSGIILLISGIFGG 132 (181)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455666666555443
No 89
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.16 E-value=74 Score=22.34 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhcccccccchHH
Q 040173 68 GVFTLAWICREVERLEVLVWVVEV 91 (116)
Q Consensus 68 ~ls~lsW~~~y~~g~p~g~~~~d~ 91 (116)
+++.+.-+||-++| |..+||+=.
T Consensus 14 ~~~~~~~l~Rli~G-Pt~~DRvvA 36 (94)
T PRK12600 14 AISMLLMLIRVIKG-PTLADRVVA 36 (94)
T ss_pred HHHHHHHHHHhhcC-ccHHHHHHH
Confidence 45666678999999 777787643
No 90
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=25.86 E-value=1.7e+02 Score=18.17 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhc
Q 040173 68 GVFTLAWICREVER 81 (116)
Q Consensus 68 ~ls~lsW~~~y~~g 81 (116)
+-....|+|.-+.|
T Consensus 26 ~YGF~vWm~Q~~~G 39 (42)
T TIGR02973 26 GYGFAVWMYQILAG 39 (42)
T ss_pred HHHHHHHHHHHhcC
Confidence 34556799998876
No 91
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=25.77 E-value=76 Score=21.98 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcccccccch
Q 040173 67 AGVFTLAWICREVERLEVLVWVV 89 (116)
Q Consensus 67 ~~ls~lsW~~~y~~g~p~g~~~~ 89 (116)
-.++.+.-+||-+|| |..+||+
T Consensus 13 l~~a~~l~l~R~v~G-Pt~~DRv 34 (89)
T PRK06161 13 LALAMLLALWRLLRG-PRAQDRI 34 (89)
T ss_pred HHHHHHHHHHHHHcC-ccHHHHH
Confidence 345556667899999 7777765
No 92
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=78 Score=23.18 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=14.3
Q ss_pred chHHHHHhhHhHHHHHhHHHHHhh
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEKKQ 111 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e~g 111 (116)
.++++|.|+.|+.+.+-+++|+.-
T Consensus 49 ~Lk~~r~rl~~~~d~v~~~sk~a~ 72 (104)
T COG4575 49 ALKEARDRLGDTGDAVVQRSKAAA 72 (104)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 355666666666666666665543
No 93
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=25.04 E-value=2.6e+02 Score=19.97 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=9.5
Q ss_pred HHHhhHhHHHHHhHHHHHhhhh
Q 040173 92 SSQQSLNLKKYVGKRKEKKQQL 113 (116)
Q Consensus 92 Ar~R~~d~a~~vg~k~~e~g~~ 113 (116)
+++++.+....+.++..+.|.|
T Consensus 38 ~~~~l~~i~~al~~y~~d~g~y 59 (134)
T TIGR01710 38 AKAQIKALKNALDMYRLDNGRY 59 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3344444444444444444443
No 94
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=24.99 E-value=1.8e+02 Score=27.65 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHhhHhHHH
Q 040173 64 MGIAGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKK 101 (116)
Q Consensus 64 ~g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~ 101 (116)
.++-++..-.|.++++..+++|.++|.+--+.++|.|+
T Consensus 10 ~~~~gl~~a~~~~~~v~~~~~G~~~M~~Ia~~I~eGA~ 47 (697)
T TIGR01104 10 CAVIGIAYAVLQWVWVSRVKLGTAKMAEIQQAISEGAT 47 (697)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 34555666778888887777777666666666666553
No 95
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=24.82 E-value=3.4e+02 Score=23.97 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=24.9
Q ss_pred HHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040173 27 VTLLLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGI 66 (116)
Q Consensus 27 vigL~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~ 66 (116)
.+.+.++.|+=+++.|+|-+..-.+.-....+-.+|.+|.
T Consensus 152 iit~li~~~l~~~~~~iwp~i~~~I~~~~~~i~~~g~~g~ 191 (476)
T TIGR01998 152 IMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGA 191 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3456677888888899997766666544443333444443
No 96
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=24.45 E-value=1.8e+02 Score=17.97 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhcccccccchHHHHH
Q 040173 65 GIAGVFTLAWICREVERLEVLVWVVEVSSQ 94 (116)
Q Consensus 65 g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~ 94 (116)
.+.-++.+.|.|+ |...++.|+|.+
T Consensus 20 ~~~Figiv~wa~~-----p~~k~~f~eaa~ 44 (48)
T cd01324 20 ALFFLGVVVWAFR-----PGRKKAFDEAAN 44 (48)
T ss_pred HHHHHHHHHHHhC-----CCcchhHHHHHc
Confidence 4555677888887 433445565544
No 97
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=24.30 E-value=1.5e+02 Score=28.40 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040173 24 LATVTLLLISSPVLLIF---SPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWIC 76 (116)
Q Consensus 24 ~gtvigL~vatPL~vif---SPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~ 76 (116)
..|+...+-..|+.+-. ++.+-|.++++ +.|.++|-.+-+.-+=++.|+.
T Consensus 977 mTtlTti~gllPl~l~~G~g~~~~~plai~i---i~GL~~St~ltL~~vP~ly~~~ 1029 (1049)
T PRK15127 977 MTSLAFILGVMPLVISSGAGSGAQNAVGTGV---MGGMVTATVLAIFFVPVFFVVV 1029 (1049)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHhcCchhhh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667887754 56888876654 4456666666665555444443
No 98
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=24.18 E-value=3e+02 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 040173 30 LLISSPVLLIFSPLLVSAVFVLVGALTGFTA 60 (116)
Q Consensus 30 L~vatPL~vifSPVlVPaai~~~l~~~Gfl~ 60 (116)
+....|++++|+=.-.|+++.+--++.++.+
T Consensus 217 M~~imPim~~~~~~~fPaGL~LYW~~snl~s 247 (329)
T PRK01315 217 LLYLFPLMFLVSGIAFPVGVLFYWLTSNVWT 247 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999988876665
No 99
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=24.12 E-value=83 Score=24.49 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHh
Q 040173 21 FSFLATVTLLLISSPVLLIFS 41 (116)
Q Consensus 21 lTL~gtvigL~vatPL~vifS 41 (116)
-.|..|+.||.++.|-.+.++
T Consensus 165 eALitTA~GL~VAIPAli~yn 185 (211)
T TIGR02797 165 EALLATAIGLVAAIPAVVIYN 185 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999866543
No 100
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.82 E-value=4.7e+02 Score=22.61 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 040173 62 IAMGIAGVFTLAWICREVERL 82 (116)
Q Consensus 62 g~~g~~~ls~lsW~~~y~~g~ 82 (116)
+...+..+-.+.-+|+|+||.
T Consensus 253 t~~av~~i~~i~kVh~~yRgs 273 (313)
T KOG3088|consen 253 TLEAVLSIWVLQKVHSYYRGS 273 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334444556677889999996
No 101
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=23.78 E-value=5.2e+02 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHH
Q 040173 22 SFLATVTLLLISSPVLLIFSPLLVSAVFVLVGAL 55 (116)
Q Consensus 22 TL~gtvigL~vatPL~vifSPVlVPaai~~~l~~ 55 (116)
.+.+++..++.+.||+..-++.+-|.++++.+.+
T Consensus 379 Il~s~lTTlia~lpL~~~g~g~ik~FAitliiGi 412 (758)
T PRK13023 379 IVDANLTTLIAALVLFLLGSGTVHGFALTVAIGI 412 (758)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 4556667778888998888888888777665544
No 102
>TIGR00930 2a30 K-Cl cotransporter.
Probab=23.62 E-value=5.7e+02 Score=24.69 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=19.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040173 40 FSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVER 81 (116)
Q Consensus 40 fSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g 81 (116)
+.| ++|..-.+.....-|..+.-..+.++....=+|.|++-
T Consensus 498 ~~~-~~sllG~l~c~~lmf~i~w~~ali~~~i~~~ly~~~~~ 538 (953)
T TIGR00930 498 YHW-WLSLLGASLCCAIMFLISWWAALVAMVIALFLYKYVTY 538 (953)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344 34444444444444555544444444444445555543
No 103
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=23.12 E-value=3.2e+02 Score=20.33 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhcc--cccccchHHHHH
Q 040173 69 VFTLAWICREVERL--EVLVWVVEVSSQ 94 (116)
Q Consensus 69 ls~lsW~~~y~~g~--p~g~~~~d~Ar~ 94 (116)
+....++++.+|+. ...+|+.|.||.
T Consensus 98 l~~~~~~~~~~~~~l~~v~~~~~eaA~~ 125 (217)
T PRK10782 98 VGAAPFIARMVENALLEIPTGLIEASRA 125 (217)
T ss_pred HHHHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 44455667777765 555677888874
No 104
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.12 E-value=88 Score=21.74 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhcccccccchH
Q 040173 68 GVFTLAWICREVERLEVLVWVVE 90 (116)
Q Consensus 68 ~ls~lsW~~~y~~g~p~g~~~~d 90 (116)
.++.+.-+||-+|| |..+||+=
T Consensus 16 ~~~~~l~~~R~i~G-Pt~~DRvv 37 (91)
T PRK12599 16 VLALILSLYRVILG-PTLPDRVV 37 (91)
T ss_pred HHHHHHHHHHHhcC-ccHhHHHH
Confidence 44556668899999 77777653
No 105
>PRK10574 putative major pilin subunit; Provisional
Probab=22.86 E-value=3.3e+02 Score=20.34 Aligned_cols=25 Identities=12% Similarity=-0.101 Sum_probs=14.0
Q ss_pred chHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
+..++.+.+......+.++..+.|.
T Consensus 38 ~~~~~~~~~~~~~~av~~~~~~~g~ 62 (146)
T PRK10574 38 ALTDMLQTFVPYKTAVELCALEHGG 62 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455555555555566666665554
No 106
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=22.75 E-value=4.2e+02 Score=21.47 Aligned_cols=21 Identities=43% Similarity=0.562 Sum_probs=13.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 040173 37 LLIFSPLLVSAVFVLVGALTG 57 (116)
Q Consensus 37 ~vifSPVlVPaai~~~l~~~G 57 (116)
|++.||.+-|..+......-|
T Consensus 89 Fl~a~p~~n~~~~~~~~~~lg 109 (307)
T PF03773_consen 89 FLLASPLLNPIVLLLTWAALG 109 (307)
T ss_pred HHHhhHHhhHHHHHHHHHHhC
Confidence 566667777766666655444
No 107
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=22.71 E-value=2.2e+02 Score=18.15 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhc
Q 040173 68 GVFTLAWICREVER 81 (116)
Q Consensus 68 ~ls~lsW~~~y~~g 81 (116)
+-....|++.-+-|
T Consensus 31 ~YGF~vWm~Q~~~G 44 (47)
T TIGR02972 31 GYGFIIWMIQAFGG 44 (47)
T ss_pred HHHHHHHHHHHHcC
Confidence 34556799998866
No 108
>COG4709 Predicted membrane protein [Function unknown]
Probab=22.44 E-value=4.2e+02 Score=21.42 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040173 56 TGFTAAIAMGIAGVFTLAWICRE 78 (116)
Q Consensus 56 ~Gfl~sg~~g~~~ls~lsW~~~y 78 (116)
..+..|.++|++......-+.+|
T Consensus 151 f~~IGs~lLgl~~~~~if~iv~~ 173 (195)
T COG4709 151 FIGIGSLLLGLGLGIVIFAIVKY 173 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666665444333343
No 109
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=22.39 E-value=2.4e+02 Score=21.13 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=28.4
Q ss_pred HHHhhcc-cccccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 76 CREVERL-EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 76 ~~y~~g~-p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
.+|+++. |.-++.+|.-+.-+.|.+..++++-++.++
T Consensus 70 L~~l~~~~~~~~~~v~~Lq~~~~~L~~~i~~~~~~~~~ 107 (154)
T PF00489_consen 70 LKYLQGEFPGLKENVESLQLDTKDLAQTIKQKMKNPDE 107 (154)
T ss_dssp HHHTTTSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3577777 655677888888889999999998887543
No 110
>PRK15357 pathogenicity island 2 effector protein SseG; Provisional
Probab=22.21 E-value=1.6e+02 Score=23.99 Aligned_cols=37 Identities=5% Similarity=-0.161 Sum_probs=25.1
Q ss_pred HHHhhcccccccchHHHHHhhHhHHHHHhHHHHHhhhh
Q 040173 76 CREVERLEVLVWVVEVSSQQSLNLKKYVGKRKEKKQQL 113 (116)
Q Consensus 76 ~~y~~g~p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~~ 113 (116)
|++-++.|.++|.+..|-..+.+ -..=.||+++.+.+
T Consensus 116 yh~k~~L~MgsDsI~NAv~~l~k-cg~sd~ra~~~aka 152 (229)
T PRK15357 116 YHHKHHLPMAHDSIGNAVFYIAN-CFANQRKSMAIAKA 152 (229)
T ss_pred HhcccCCCccchHHHHHHHHHHH-hcccHHHHHHHHHh
Confidence 55444449999999999887774 33346677766654
No 111
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=21.92 E-value=3e+02 Score=23.68 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHhhH
Q 040173 60 AAIAMGIAGVFTLAWICREVERLEVLVWVVEVSSQQSL 97 (116)
Q Consensus 60 ~sg~~g~~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~ 97 (116)
+--++|++++-++.-.+...|.+| .+.+|+.||-++
T Consensus 123 tlv~lgig~i~Ali~a~~itk~~~--~~~~~e~~Rll~ 158 (308)
T PF06166_consen 123 TLVGLGIGAIVALIVALIITKPKP--KQPLKESRRLLD 158 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCh--hhhhHHHHHHHH
Confidence 444556665555544444444433 345666665443
No 112
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.84 E-value=1.5e+02 Score=21.46 Aligned_cols=51 Identities=14% Similarity=0.026 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccccchHHHHH
Q 040173 38 LIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVERL---EVLVWVVEVSSQ 94 (116)
Q Consensus 38 vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~g~---p~g~~~~d~Ar~ 94 (116)
..|+-++.| +=+-+=|+.+.|.+.+++ +..=+.||.|.. ...+.|+|.||.
T Consensus 31 ~~~gi~~lP----VD~w~KGy~~MG~lfltg--St~tL~K~~rD~he~~rl~ari~~Ar~ 84 (95)
T COG4298 31 LGLGIWLLP----VDLWTKGYWAMGILFLTG--STVTLVKYRRDEHESARLSARIEKARN 84 (95)
T ss_pred HHHHhheec----hHHHHHHHHHHHHHHHhc--chhhhhHHhhhHHHHHHHHHHHHHHHH
Confidence 456666666 556677888887777665 444567887764 344455555553
No 113
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.64 E-value=4.5e+02 Score=21.45 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHH
Q 040173 22 SFLATVTLLLISSPVLLIFSPLLVSAVFVLVG 53 (116)
Q Consensus 22 TL~gtvigL~vatPL~vifSPVlVPaai~~~l 53 (116)
++..++..++...|+++.-+|.+-|.+++...
T Consensus 231 ~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~~ 262 (289)
T PRK13022 231 TIITSLTTLLVVLALYLFGGGTLHDFALALLI 262 (289)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34456666677788888777888887766554
No 114
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=21.47 E-value=1.6e+02 Score=20.16 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhcccccccch
Q 040173 65 GIAGVFTLAWICREVERLEVLVWVV 89 (116)
Q Consensus 65 g~~~ls~lsW~~~y~~g~p~g~~~~ 89 (116)
.+..++.+.-+||-++| |..+||+
T Consensus 11 ~~~~~~~~l~~~Rl~~G-Pt~~DRv 34 (87)
T PRK12612 11 IIILLVILLALVLIIRT-KDILTRL 34 (87)
T ss_pred HHHHHHHHHHHHHHHcC-cChhhHH
Confidence 34456667778899988 6666755
No 115
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=21.36 E-value=3.1e+02 Score=19.45 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 040173 61 AIAMGIAGVFTLAWICREVE 80 (116)
Q Consensus 61 sg~~g~~~ls~lsW~~~y~~ 80 (116)
.-.+-..++..++++|-+.+
T Consensus 80 ~f~~i~~~i~ll~iiYi~~K 99 (104)
T PF12420_consen 80 IFFIIFITIILLVIIYIFIK 99 (104)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 44456667788888887653
No 116
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=21.30 E-value=1.4e+02 Score=28.07 Aligned_cols=35 Identities=9% Similarity=-0.069 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhcccccccchHHHHHhhHhHHH
Q 040173 67 AGVFTLAWICREVERLEVLVWVVEVSSQQSLNLKK 101 (116)
Q Consensus 67 ~~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~ 101 (116)
-++..-.|+++++.++|.++++|++--+.++|-|+
T Consensus 3 ~~l~~a~~~~~~v~~~~~G~~~m~~Ia~~I~eGA~ 37 (682)
T PF03030_consen 3 LGLIFALFLARWVLKQDEGNEKMQEIAAAIQEGAM 37 (682)
T ss_dssp HHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34555567788888778888777666666766553
No 117
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=21.22 E-value=1.3e+02 Score=22.86 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHh
Q 040173 20 GFSFLATVTLLLISSPVLLIFS 41 (116)
Q Consensus 20 GlTL~gtvigL~vatPL~vifS 41 (116)
+..|..|+.||.++.|-.+..+
T Consensus 100 s~ALitTa~GL~VAIpali~yn 121 (138)
T TIGR02805 100 SLALKATALGLLVAIPSLVFYN 121 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999876654
No 118
>PRK02463 OxaA-like protein precursor; Provisional
Probab=20.36 E-value=4.1e+02 Score=22.24 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040173 30 LLISSPVLLIFSPLLVSAVFVLVGALTGFTAAIAMGIAGVFTLAWICREVE 80 (116)
Q Consensus 30 L~vatPL~vifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~y~~ 80 (116)
.....|++++|.=.-+|+++.+--++.++.+ -.-.|+.||+.
T Consensus 210 m~~~~Pim~~~~~~~~PagL~lYW~~snlfs---------i~Q~~i~~~~~ 251 (307)
T PRK02463 210 MMYMMPIMMVVFSFSSPAGVGLYWLVGGFFS---------IIQQLITTYIL 251 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHh
Confidence 4566899999888999999999988887776 44567777653
No 119
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=20.26 E-value=20 Score=24.20 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=2.9
Q ss_pred HHHHHHHHHHhhcccccccchHHHHHh
Q 040173 69 VFTLAWICREVERLEVLVWVVEVSSQQ 95 (116)
Q Consensus 69 ls~lsW~~~y~~g~p~g~~~~d~Ar~R 95 (116)
+-.+.++||+ |.+..||-++|.-|+.
T Consensus 27 lLIlf~iyR~-rkkdEGSY~l~e~K~s 52 (64)
T PF01034_consen 27 LLILFLIYRM-RKKDEGSYDLDEPKPS 52 (64)
T ss_dssp -----------S------SS--S----
T ss_pred HHHHHHHHHH-HhcCCCCccCCCCCcc
Confidence 3456788887 4446677888887753
No 120
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.22 E-value=6e+02 Score=23.78 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhHHHHhhHHHH
Q 040173 25 ATVTLLLISSPVLLIFSPLLVS 46 (116)
Q Consensus 25 gtvigL~vatPL~vifSPVlVP 46 (116)
|+.+|+++++=++.+.+.-..+
T Consensus 240 g~~~g~~l~~~il~~y~~~~~~ 261 (764)
T TIGR02865 240 GTGIGYLVGFLILAFYTQGSVA 261 (764)
T ss_pred eeeHHHHHHHHHHHHHhccchh
Confidence 4556667777666666554444
No 121
>PF14219 DUF4328: Domain of unknown function (DUF4328)
Probab=20.06 E-value=2.4e+02 Score=20.75 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040173 54 ALTGFTAAIAMGIAGVFTLAWICREVER 81 (116)
Q Consensus 54 ~~~Gfl~sg~~g~~~ls~lsW~~~y~~g 81 (116)
...+.+....+-.+++..+.|+||--+-
T Consensus 24 ~~~~~~~~~~~v~~~V~~l~Wl~rar~n 51 (171)
T PF14219_consen 24 ALLGLLALLLFVAAAVVFLVWLYRARAN 51 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677778889999999996544
Done!