Query 040173
Match_columns 116
No_of_seqs 108 out of 184
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zv1_A Doublesex protein; UBA 48.9 14 0.00048 24.1 2.8 23 88-110 40-62 (65)
2 2jz1_A Protein doublesex; sex 45.6 31 0.0011 23.3 4.2 22 88-109 40-61 (80)
3 2lse_A Four helix bundle prote 48.0 5.4 0.00019 27.5 0.0 29 88-116 23-51 (101)
4 2lx0_A Membrane fusion protein 41.6 43 0.0015 18.8 3.8 16 66-81 16-31 (32)
5 1lyp_A CAP18; lipopolysacchari 34.0 36 0.0012 19.1 2.6 18 95-112 5-22 (32)
6 1eze_A Cholesteryl ester trans 32.1 28 0.00095 20.4 2.0 26 83-112 2-27 (38)
7 1ory_B Flagellin; flagellar ch 31.8 24 0.00082 21.7 1.8 24 86-109 4-29 (55)
8 4av3_A K(+)-stimulated pyropho 29.3 62 0.0021 29.3 4.7 34 68-101 23-56 (735)
9 3sok_A Fimbrial protein; pilus 28.0 1.5E+02 0.0051 20.4 6.3 26 88-113 32-57 (151)
10 2k6o_A Cathelicidin antimicrob 22.4 83 0.0028 18.4 2.8 26 87-112 4-29 (37)
11 2onk_C Molybdate/tungstate ABC 22.3 2.3E+02 0.008 20.7 7.4 19 37-55 112-130 (284)
12 2hi2_A Fimbrial protein; type 22.1 1.2E+02 0.0042 20.7 4.3 26 88-113 32-57 (158)
13 3kxy_T EXSE; type-three secret 20.7 62 0.0021 20.7 2.2 22 73-98 31-52 (66)
14 3d31_C Sulfate/molybdate ABC t 20.3 2.6E+02 0.0091 20.6 6.8 19 37-55 122-140 (295)
15 1qkr_A Vinculin, tail domain; 20.1 88 0.003 23.7 3.4 40 72-112 52-92 (188)
No 1
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=48.95 E-value=14 Score=24.14 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.8
Q ss_pred chHHHHHhhHhHHHHHhHHHHHh
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEKK 110 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e~ 110 (116)
.+|.|.|||.|...-+.|+.|+.
T Consensus 40 d~eeAsrrI~Eg~~~v~~ysr~h 62 (65)
T 1zv1_A 40 NIEEASRRIEEGQYVVNEYSRQH 62 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999888888888753
No 2
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=45.57 E-value=31 Score=23.26 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=17.9
Q ss_pred chHHHHHhhHhHHHHHhHHHHH
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEK 109 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e 109 (116)
.+|.|.+||.|....+.++.|+
T Consensus 40 d~eeAsrrI~eg~~~vn~~~r~ 61 (80)
T 2jz1_A 40 NIEEASRRIEEGQYVVNEYSRQ 61 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999977777777665
No 3
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.96 E-value=5.4 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=23.5
Q ss_pred chHHHHHhhHhHHHHHhHHHHHhhhhhcC
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEKKQQLNEI 116 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e~g~~~~~ 116 (116)
.-|.||.|+...|+.|++..+|--.+|-|
T Consensus 23 apdearerieklakdvkdeleegdaknmi 51 (101)
T 2lse_A 23 APDEARERIEKLAKDVKDELEEGDAKNMI 51 (101)
Confidence 35889999999999999988876666643
No 4
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=41.58 E-value=43 Score=18.78 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 040173 66 IAGVFTLAWICREVER 81 (116)
Q Consensus 66 ~~~ls~lsW~~~y~~g 81 (116)
++-++.-.|++||++.
T Consensus 16 ltflafgfwlfkylqk 31 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4556777899999853
No 5
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=33.97 E-value=36 Score=19.10 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=7.8
Q ss_pred hhHhHHHHHhHHHHHhhh
Q 040173 95 QSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 95 R~~d~a~~vg~k~~e~g~ 112 (116)
|+..--...+||.++.||
T Consensus 5 rlrkfrnkikeklkkigq 22 (32)
T 1lyp_A 5 RLRKFRNKIKEKLKKIGQ 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334445555554
No 6
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=32.09 E-value=28 Score=20.39 Aligned_cols=26 Identities=0% Similarity=-0.091 Sum_probs=18.0
Q ss_pred cccccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 83 EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 83 p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
|..++++ .|+.|....+.||+|+.-+
T Consensus 2 ptie~~f----dkvke~g~tl~eK~k~~~~ 27 (38)
T 1eze_A 2 PDVSSAL----DKLKEFGNTLEDKAWEVIN 27 (38)
T ss_dssp CGGGGSS----HHHHHHTTHHHHHHHHHHH
T ss_pred ccHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3445556 6777888888888887643
No 7
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIC, chaperone; 2.45A {Aquifex aeolicus}
Probab=31.78 E-value=24 Score=21.71 Aligned_cols=24 Identities=4% Similarity=-0.150 Sum_probs=8.5
Q ss_pred ccchHHHHHhhH--hHHHHHhHHHHH
Q 040173 86 VWVVEVSSQQSL--NLKKYVGKRKEK 109 (116)
Q Consensus 86 ~~~~d~Ar~R~~--d~a~~vg~k~~e 109 (116)
.+.++.++.||. |+|++.-+.+|.
T Consensus 4 ~eNl~aa~SrI~DaD~A~E~~~~tk~ 29 (55)
T 1ory_B 4 KDNTDNAESIIRNVDFAKEMTEFTKY 29 (55)
T ss_dssp ------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhchhHHHHHHHHHHH
Confidence 467888999995 578877777664
No 8
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=29.31 E-value=62 Score=29.34 Aligned_cols=34 Identities=12% Similarity=-0.274 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcccccccchHHHHHhhHhHHH
Q 040173 68 GVFTLAWICREVERLEVLVWVVEVSSQQSLNLKK 101 (116)
Q Consensus 68 ~ls~lsW~~~y~~g~p~g~~~~d~Ar~R~~d~a~ 101 (116)
++..-.|.|+++..+|.|.++|++-.+.++|.|+
T Consensus 23 ~l~~a~~~~~~v~~~~~G~~~M~eIa~~I~eGA~ 56 (735)
T 4av3_A 23 ALGFAAANFAAVVRKPEGTERMKEISSYIRSGAD 56 (735)
T ss_dssp HHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3445567777777668888888777777777654
No 9
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=28.00 E-value=1.5e+02 Score=20.42 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=17.2
Q ss_pred chHHHHHhhHhHHHHHhHHHHHhhhh
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEKKQQL 113 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e~g~~ 113 (116)
|.+++++++.+....+.++..+.|.|
T Consensus 32 ~~~~~~~~~~~~~~a~~~~~~~~g~~ 57 (151)
T 3sok_A 32 QAAEGLTLADGLKVRISDHLESGECK 57 (151)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45666667776666677777666654
No 10
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=22.37 E-value=83 Score=18.38 Aligned_cols=26 Identities=12% Similarity=-0.109 Sum_probs=20.3
Q ss_pred cchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 87 WVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 87 ~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
|-+..+++++.+.-+..|||.|+.=|
T Consensus 4 ~~lrk~geKig~~~kkIgQkIKdFf~ 29 (37)
T 2k6o_A 4 DFFRKSKEKIGKEFKRIVQRIKDFLR 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888998888889999888644
No 11
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=22.34 E-value=2.3e+02 Score=20.73 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 040173 37 LLIFSPLLVSAVFVLVGAL 55 (116)
Q Consensus 37 ~vifSPVlVPaai~~~l~~ 55 (116)
.+++.|..+|..+......
T Consensus 112 ~~~~~~~~iP~~v~~~~~~ 130 (284)
T 2onk_C 112 GIVDLPVVIPHTVAGIALL 130 (284)
T ss_dssp HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566778888766554443
No 12
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=22.09 E-value=1.2e+02 Score=20.65 Aligned_cols=26 Identities=12% Similarity=-0.093 Sum_probs=13.8
Q ss_pred chHHHHHhhHhHHHHHhHHHHHhhhh
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEKKQQL 113 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e~g~~ 113 (116)
|.+++++.+.+....+.++..+.|.|
T Consensus 32 ~~~~~~~~~~~~~~a~~~~~~~~g~~ 57 (158)
T 2hi2_A 32 QVSEAILLAEGQKSAVTEYYLNHGKW 57 (158)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHSSC
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 44455555555555555555555543
No 13
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=20.71 E-value=62 Score=20.70 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.6
Q ss_pred HHHHHHhhcccccccchHHHHHhhHh
Q 040173 73 AWICREVERLEVLVWVVEVSSQQSLN 98 (116)
Q Consensus 73 sW~~~y~~g~p~g~~~~d~Ar~R~~d 98 (116)
-|+.|.+.|.| +-|+|-+|++|
T Consensus 31 rwlarnvagdp----rseqalqrlad 52 (66)
T 3kxy_T 31 RWLARNVAGDP----RSEQALQRLAD 52 (66)
T ss_dssp HHHHHHTCCCT----THHHHHHHHHH
T ss_pred HHHHHhccCCc----cHHHHHHHHhc
Confidence 58888776643 56889999987
No 14
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=20.31 E-value=2.6e+02 Score=20.57 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=12.1
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 040173 37 LLIFSPLLVSAVFVLVGAL 55 (116)
Q Consensus 37 ~vifSPVlVPaai~~~l~~ 55 (116)
.+++.|..+|..+......
T Consensus 122 ~~~~~~~~iP~~v~~~~~~ 140 (295)
T 3d31_C 122 SIIDVPVVVPHTVAGIALL 140 (295)
T ss_dssp HHHHGGGTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888766544433
No 15
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=20.11 E-value=88 Score=23.68 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=26.1
Q ss_pred HHHHHHHhhcc-cccccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 72 LAWICREVERL-EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 72 lsW~~~y~~g~-p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
..=||.|.||. ....|-+..||. +++.+..+.+.+|+.+.
T Consensus 52 m~~M~~ftrG~g~t~~dlI~~Ak~-iAe~~~~l~k~ar~iA~ 92 (188)
T 1qkr_A 52 MAEMSRLVRGGSGNKRALIQCAKD-IAKASDEVTRLAKEVAK 92 (188)
T ss_dssp HHHHHHHTTSCGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34577888877 555566666664 77777777766666553
Done!