Query 040173
Match_columns 116
No_of_seqs 108 out of 184
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 08:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040173.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040173hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 58.6 6.7 0.00049 21.2 3.6 22 11-32 5-26 (34)
2 d1ijwc_ a.4.1.2 (C:) HIN recom 36.6 7.1 0.00052 21.9 1.4 26 85-111 7-32 (47)
3 d2o7ta2 a.121.1.1 (A:79-188) T 34.4 15 0.0011 23.2 3.0 28 85-112 34-61 (110)
4 d1pv7a_ f.38.1.2 (A:) Lactose 32.6 59 0.0043 21.0 6.7 15 86-100 403-417 (417)
5 d1qkra_ a.24.9.1 (A:) Vinculin 29.0 23 0.0017 24.7 3.4 42 70-112 48-90 (181)
6 d1di0a_ c.16.1.1 (A:) Lumazine 27.3 11 0.0008 25.6 1.4 28 85-112 107-134 (148)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 26.3 60 0.0044 19.1 6.8 25 88-112 32-56 (158)
8 d2ctfa1 d.51.1.1 (A:7-96) Vigi 22.3 24 0.0017 21.3 2.2 21 86-106 70-90 (90)
9 d1t33a1 a.4.1.9 (A:1-88) Putat 19.1 36 0.0026 19.8 2.5 10 73-82 46-55 (88)
10 d2ctka1 d.51.1.1 (A:8-98) Vigi 18.6 39 0.0028 20.0 2.6 21 86-106 61-81 (91)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=58.60 E-value=6.7 Score=21.15 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040173 11 IGGPLFGMMGFSFLATVTLLLI 32 (116)
Q Consensus 11 ~gg~LL~LaGlTL~gtvigL~v 32 (116)
+.|+-+...|+||.|..+|+++
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4567788899999999998864
No 2
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=36.65 E-value=7.1 Score=21.92 Aligned_cols=26 Identities=8% Similarity=-0.390 Sum_probs=19.0
Q ss_pred cccchHHHHHhhHhHHHHHhHHHHHhh
Q 040173 85 LVWVVEVSSQQSLNLKKYVGKRKEKKQ 111 (116)
Q Consensus 85 g~~~~d~Ar~R~~d~a~~vg~k~~e~g 111 (116)
.+||+++||+++++- .-+.|=++++|
T Consensus 7 t~~q~~~a~~l~~~G-~s~~~iA~~~g 32 (47)
T d1ijwc_ 7 NKHEQEQISRLLEKG-HPRQQLAIIFG 32 (47)
T ss_dssp CHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHC
Confidence 468999999988753 45666666665
No 3
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=34.41 E-value=15 Score=23.20 Aligned_cols=28 Identities=7% Similarity=-0.128 Sum_probs=24.8
Q ss_pred cccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 85 LVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 85 g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
.+++++.+|.|+.+..+.+=+++|+.|-
T Consensus 34 ~~~~~~~~r~~l~~~~~~ll~rA~~aG~ 61 (110)
T d2o7ta2 34 LPDEVSALRRTTEKNTTTLINLAKQHGL 61 (110)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4577899999999999999999999885
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=32.60 E-value=59 Score=21.00 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=9.9
Q ss_pred ccchHHHHHhhHhHH
Q 040173 86 VWVVEVSSQQSLNLK 100 (116)
Q Consensus 86 ~~~~d~Ar~R~~d~a 100 (116)
+++.+..|||+.|.|
T Consensus 403 ~~~~~~~r~~~~e~a 417 (417)
T d1pv7a_ 403 PGPLSLLRRQVNEVA 417 (417)
T ss_dssp SSCTTHHHHHHHHHC
T ss_pred CCccchhHhhhccCC
Confidence 345677778887754
No 5
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.96 E-value=23 Score=24.69 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcc-cccccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 70 FTLAWICREVERL-EVLVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 70 s~lsW~~~y~~g~-p~g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
+...=||.|.||. |.-.|=+..||. +++.+..+-+.+|+...
T Consensus 48 ~~m~~m~~f~rg~g~~k~dLI~aAK~-iA~a~~~L~~~Ar~iA~ 90 (181)
T d1qkra_ 48 LLMAEMSRLVRGGSGNKRALIQCAKD-IAKASDEVTRLAKEVAK 90 (181)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 3455688888988 554554555554 77777777777776543
No 6
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=27.33 E-value=11 Score=25.56 Aligned_cols=28 Identities=4% Similarity=-0.123 Sum_probs=22.8
Q ss_pred cccchHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 85 LVWVVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 85 g~~~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
.+|..+||+.|.....++.++|-+|..+
T Consensus 107 t~~n~~QA~~R~~~~~~~~~nKG~EaA~ 134 (148)
T d1di0a_ 107 TPHHFHESKEHHDFFHAHFKVKGVEAAH 134 (148)
T ss_dssp CBSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhccccccccccHHHHHH
Confidence 4688999999998877777888887765
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=26.35 E-value=60 Score=19.12 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=15.3
Q ss_pred chHHHHHhhHhHHHHHhHHHHHhhh
Q 040173 88 VVEVSSQQSLNLKKYVGKRKEKKQQ 112 (116)
Q Consensus 88 ~~d~Ar~R~~d~a~~vg~k~~e~g~ 112 (116)
+...++..+.+....+.++..+.|.
T Consensus 32 ~~~~~~~~l~~i~~~~~~~~~~~~~ 56 (158)
T d2pila_ 32 QVSEAILLAEGQKSAVTEYYLNHGK 56 (158)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556666666666666666666554
No 8
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.29 E-value=24 Score=21.33 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=17.0
Q ss_pred ccchHHHHHhhHhHHHHHhHH
Q 040173 86 VWVVEVSSQQSLNLKKYVGKR 106 (116)
Q Consensus 86 ~~~~d~Ar~R~~d~a~~vg~k 106 (116)
++.+|.||+++.+..+++.+|
T Consensus 70 ~~~ve~Ak~~I~~iv~el~~r 90 (90)
T d2ctfa1 70 TEDVSVAQEQIEGMVKDLINR 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999888776654
No 9
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=19.07 E-value=36 Score=19.78 Aligned_cols=10 Identities=20% Similarity=-0.170 Sum_probs=7.7
Q ss_pred HHHHHHhhcc
Q 040173 73 AWICREVERL 82 (116)
Q Consensus 73 sW~~~y~~g~ 82 (116)
.=+|+||..+
T Consensus 46 ~~~Y~~F~sK 55 (88)
T d1t33a1 46 AAITYYFGSK 55 (88)
T ss_dssp HHHHHHHSSH
T ss_pred hhhhccCCCH
Confidence 4579999776
No 10
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.62 E-value=39 Score=19.99 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=16.0
Q ss_pred ccchHHHHHhhHhHHHHHhHH
Q 040173 86 VWVVEVSSQQSLNLKKYVGKR 106 (116)
Q Consensus 86 ~~~~d~Ar~R~~d~a~~vg~k 106 (116)
++++|.|++++.+..++..+.
T Consensus 61 ~~~V~~A~~~I~~~v~e~~~~ 81 (91)
T d2ctka1 61 AANLDRAKAGLLERVKELQAE 81 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999998877655443
Done!