Query 040176
Match_columns 142
No_of_seqs 106 out of 1104
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:51:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.7 4E-17 8.8E-22 138.9 8.6 96 35-135 259-355 (358)
2 PRK10532 threonine and homoser 99.3 1.1E-11 2.3E-16 101.7 8.5 78 35-112 211-290 (293)
3 PRK11689 aromatic amino acid e 99.2 6.3E-11 1.4E-15 97.2 7.5 72 35-106 218-290 (295)
4 PRK11453 O-acetylserine/cystei 99.2 8.9E-11 1.9E-15 96.3 8.1 75 32-106 214-290 (299)
5 PLN00411 nodulin MtN21 family 99.2 2.7E-10 5.9E-15 97.2 10.4 96 11-106 11-159 (358)
6 PRK11272 putative DMT superfam 99.0 6.4E-10 1.4E-14 91.0 7.5 74 34-107 214-289 (292)
7 PF00892 EamA: EamA-like trans 99.0 5.8E-09 1.2E-13 72.7 8.9 92 9-102 14-125 (126)
8 PRK15430 putative chlorampheni 98.9 3.9E-09 8.5E-14 86.6 7.6 69 35-103 216-285 (296)
9 TIGR00817 tpt Tpt phosphate/ph 98.9 2.5E-09 5.3E-14 87.5 5.8 65 47-111 237-301 (302)
10 PRK02971 4-amino-4-deoxy-L-ara 98.9 2.4E-08 5.2E-13 74.5 10.5 73 35-107 50-126 (129)
11 TIGR03340 phn_DUF6 phosphonate 98.8 9.6E-09 2.1E-13 83.5 5.9 60 41-100 221-280 (281)
12 TIGR00950 2A78 Carboxylate/Ami 98.7 3.4E-08 7.5E-13 78.1 6.6 64 35-98 194-259 (260)
13 PTZ00343 triose or hexose phos 98.6 1.4E-07 3E-12 79.9 7.3 65 41-105 282-350 (350)
14 COG0697 RhaT Permeases of the 98.5 5E-07 1.1E-11 71.0 8.0 72 33-104 215-288 (292)
15 PRK15051 4-amino-4-deoxy-L-ara 98.5 3E-06 6.4E-11 61.4 10.7 62 42-103 48-109 (111)
16 PF13536 EmrE: Multidrug resis 98.4 1.5E-06 3.3E-11 62.1 8.1 65 41-106 45-109 (113)
17 PRK10452 multidrug efflux syst 98.3 1.9E-05 4.1E-10 58.5 11.2 66 41-106 40-106 (120)
18 COG2510 Predicted membrane pro 98.2 8.7E-07 1.9E-11 67.0 3.1 66 38-103 73-139 (140)
19 PRK15430 putative chlorampheni 98.1 3.2E-05 6.9E-10 63.5 10.8 63 41-103 83-145 (296)
20 TIGR00688 rarD rarD protein. T 98.1 1.6E-05 3.4E-10 63.6 8.0 62 42-103 81-142 (256)
21 TIGR03340 phn_DUF6 phosphonate 98.0 2E-05 4.3E-10 64.1 7.8 64 41-104 73-136 (281)
22 TIGR00950 2A78 Carboxylate/Ami 98.0 1.7E-05 3.8E-10 62.6 7.2 63 41-103 57-119 (260)
23 TIGR00776 RhaT RhaT L-rhamnose 97.9 3.8E-05 8.3E-10 63.4 7.9 67 38-104 217-289 (290)
24 TIGR00817 tpt Tpt phosphate/ph 97.9 4.5E-05 9.7E-10 62.4 6.8 61 41-101 75-135 (302)
25 PRK11453 O-acetylserine/cystei 97.8 0.00022 4.7E-09 58.6 10.4 94 10-104 28-133 (299)
26 PRK09541 emrE multidrug efflux 97.8 0.00067 1.5E-08 49.4 11.0 66 41-106 40-106 (110)
27 PTZ00343 triose or hexose phos 97.7 0.0001 2.3E-09 62.4 7.1 61 42-102 125-185 (350)
28 PF03151 TPT: Triose-phosphate 97.7 0.00014 3.1E-09 53.1 6.3 63 41-103 91-153 (153)
29 PRK11272 putative DMT superfam 97.6 0.00069 1.5E-08 55.4 10.4 60 44-104 82-142 (292)
30 COG5006 rhtA Threonine/homoser 97.6 0.00021 4.5E-09 59.7 6.7 76 33-108 210-287 (292)
31 COG0697 RhaT Permeases of the 97.6 0.00026 5.7E-09 55.6 7.0 67 41-107 80-147 (292)
32 PF06027 DUF914: Eukaryotic pr 97.4 0.00035 7.5E-09 59.7 6.4 69 43-111 245-313 (334)
33 PF08449 UAA: UAA transporter 97.4 0.0013 2.7E-08 54.3 9.6 72 37-108 231-302 (303)
34 PRK11689 aromatic amino acid e 97.4 0.00058 1.3E-08 56.0 7.2 51 54-104 88-138 (295)
35 COG2076 EmrE Membrane transpor 97.3 0.0011 2.4E-08 48.4 6.8 64 42-105 41-105 (106)
36 PRK10650 multidrug efflux syst 97.2 0.0069 1.5E-07 44.1 10.5 62 41-102 45-107 (109)
37 PRK11431 multidrug efflux syst 97.2 0.0015 3.3E-08 47.2 6.8 63 41-103 39-102 (105)
38 TIGR00688 rarD rarD protein. T 97.1 0.00097 2.1E-08 53.2 5.7 46 33-78 209-255 (256)
39 PF04142 Nuc_sug_transp: Nucle 96.8 0.0073 1.6E-07 49.2 7.8 73 36-108 18-94 (244)
40 PF06027 DUF914: Eukaryotic pr 96.6 0.006 1.3E-07 52.2 6.8 64 44-107 92-155 (334)
41 KOG4510 Permease of the drug/m 96.6 0.0011 2.4E-08 56.0 1.9 63 42-104 108-170 (346)
42 COG2962 RarD Predicted permeas 96.6 0.0081 1.8E-07 50.7 7.0 73 33-105 212-285 (293)
43 PF00893 Multi_Drug_Res: Small 96.5 0.0067 1.4E-07 42.4 5.4 54 41-94 39-93 (93)
44 TIGR00803 nst UDP-galactose tr 96.5 0.001 2.2E-08 52.2 1.1 60 41-100 162-221 (222)
45 TIGR00776 RhaT RhaT L-rhamnose 96.3 0.006 1.3E-07 50.4 4.5 60 46-105 74-138 (290)
46 COG2962 RarD Predicted permeas 96.3 0.016 3.4E-07 49.0 6.9 64 43-106 84-147 (293)
47 PF08449 UAA: UAA transporter 96.2 0.017 3.6E-07 47.6 7.0 71 41-111 74-144 (303)
48 KOG1580 UDP-galactose transpor 96.2 0.02 4.4E-07 47.9 7.1 61 41-101 251-311 (337)
49 PF10639 UPF0546: Uncharacteri 95.4 0.058 1.3E-06 39.7 6.1 68 33-100 43-111 (113)
50 KOG4510 Permease of the drug/m 94.7 0.025 5.4E-07 48.0 2.6 66 37-102 258-324 (346)
51 PF06800 Sugar_transport: Suga 94.7 0.15 3.2E-06 42.7 7.2 71 41-111 55-130 (269)
52 KOG1441 Glucose-6-phosphate/ph 94.5 0.0056 1.2E-07 52.1 -1.5 63 49-111 253-315 (316)
53 KOG2765 Predicted membrane pro 93.9 0.22 4.8E-06 43.8 6.9 78 41-118 328-405 (416)
54 KOG4314 Predicted carbohydrate 93.3 0.041 8.8E-07 45.1 1.4 59 46-104 68-126 (290)
55 PF05653 Mg_trans_NIPA: Magnes 92.8 0.2 4.4E-06 42.0 4.9 49 55-103 74-122 (300)
56 KOG2765 Predicted membrane pro 92.1 0.08 1.7E-06 46.5 1.6 66 43-108 171-236 (416)
57 KOG1581 UDP-galactose transpor 91.5 0.46 1E-05 40.7 5.6 73 35-107 245-317 (327)
58 KOG1582 UDP-galactose transpor 91.4 0.78 1.7E-05 39.3 6.8 54 52-105 281-334 (367)
59 PRK10532 threonine and homoser 90.9 1.8 3.9E-05 35.4 8.4 57 41-103 81-137 (293)
60 KOG2234 Predicted UDP-galactos 90.8 0.84 1.8E-05 39.6 6.5 75 37-111 94-172 (345)
61 COG4975 GlcU Putative glucose 90.1 0.066 1.4E-06 44.8 -0.7 74 43-116 71-149 (288)
62 KOG2234 Predicted UDP-galactos 89.0 1.6 3.4E-05 37.9 6.8 49 62-110 281-329 (345)
63 COG3169 Uncharacterized protei 88.8 3 6.6E-05 30.5 7.1 32 72-103 84-115 (116)
64 PF04342 DUF486: Protein of un 88.4 0.32 6.9E-06 35.6 1.9 30 72-101 77-106 (108)
65 KOG1583 UDP-N-acetylglucosamin 85.9 0.89 1.9E-05 38.8 3.5 52 56-107 267-320 (330)
66 KOG4831 Unnamed protein [Funct 85.3 5.8 0.00013 29.4 7.1 82 18-101 40-123 (125)
67 PF06800 Sugar_transport: Suga 82.9 2.3 4.9E-05 35.6 4.6 49 51-99 215-267 (269)
68 PRK13499 rhamnose-proton sympo 82.8 9.2 0.0002 33.1 8.4 64 41-104 83-154 (345)
69 PF04246 RseC_MucC: Positive r 81.0 2.4 5.2E-05 31.1 3.7 44 57-101 67-113 (135)
70 COG5070 VRG4 Nucleotide-sugar 80.3 2.4 5.2E-05 35.5 3.8 59 47-105 240-298 (309)
71 COG3086 RseC Positive regulato 79.0 3.8 8.3E-05 31.6 4.3 25 54-78 71-95 (150)
72 KOG1443 Predicted integral mem 77.7 13 0.00027 32.3 7.5 49 53-101 265-313 (349)
73 KOG2922 Uncharacterized conser 76.0 0.43 9.4E-06 41.1 -1.8 60 56-116 89-148 (335)
74 KOG3912 Predicted integral mem 75.8 4.4 9.5E-05 35.0 4.2 38 66-103 121-158 (372)
75 KOG1444 Nucleotide-sugar trans 74.9 9.5 0.00021 32.8 6.0 60 49-108 246-305 (314)
76 PF05653 Mg_trans_NIPA: Magnes 74.6 11 0.00024 31.6 6.3 60 48-107 230-296 (300)
77 PF04657 DUF606: Protein of un 73.1 11 0.00024 28.1 5.4 60 41-100 74-138 (138)
78 KOG1443 Predicted integral mem 72.3 0.69 1.5E-05 39.9 -1.4 63 43-105 96-158 (349)
79 KOG1442 GDP-fucose transporter 71.8 1.3 2.7E-05 38.0 0.0 54 47-100 118-171 (347)
80 PRK10862 SoxR reducing system 67.5 11 0.00024 28.7 4.5 22 57-78 74-95 (154)
81 PRK13108 prolipoprotein diacyl 67.0 27 0.00059 31.4 7.4 23 83-105 254-276 (460)
82 KOG1441 Glucose-6-phosphate/ph 66.6 1.3 2.9E-05 37.8 -0.9 47 41-87 93-139 (316)
83 COG3238 Uncharacterized protei 63.8 47 0.001 25.5 7.2 25 81-105 124-148 (150)
84 PF08507 COPI_assoc: COPI asso 61.4 19 0.00041 26.5 4.6 30 72-102 75-104 (136)
85 PRK02237 hypothetical protein; 60.3 38 0.00083 24.9 5.9 66 41-106 39-108 (109)
86 PF05297 Herpes_LMP1: Herpesvi 59.3 2.7 5.9E-05 36.1 -0.3 42 43-87 120-161 (381)
87 KOG2766 Predicted membrane pro 58.5 12 0.00026 32.0 3.4 50 50-101 248-297 (336)
88 PF07857 DUF1632: CEO family ( 56.7 24 0.00053 29.2 4.9 21 88-108 119-139 (254)
89 PF15102 TMEM154: TMEM154 prot 55.9 11 0.00024 29.0 2.5 22 88-109 66-87 (146)
90 COG0682 Lgt Prolipoprotein dia 54.2 39 0.00084 28.6 5.8 27 86-112 255-281 (287)
91 PRK12437 prolipoprotein diacyl 51.1 71 0.0015 26.3 6.8 23 83-105 235-257 (269)
92 PRK15049 L-asparagine permease 50.9 1.8E+02 0.0038 25.8 9.7 10 64-73 422-431 (499)
93 PF15048 OSTbeta: Organic solu 50.3 23 0.0005 26.6 3.4 12 76-87 25-36 (125)
94 PRK00052 prolipoprotein diacyl 49.1 69 0.0015 26.3 6.4 25 83-107 237-261 (269)
95 PF02694 UPF0060: Uncharacteri 45.1 24 0.00051 25.9 2.7 66 41-106 38-106 (107)
96 TIGR00544 lgt prolipoprotein d 44.5 1E+02 0.0022 25.6 6.8 24 83-106 246-269 (278)
97 PF08693 SKG6: Transmembrane a 42.2 18 0.00039 22.0 1.5 19 89-107 21-39 (40)
98 COG1742 Uncharacterized conser 39.2 57 0.0012 23.9 3.9 74 33-106 30-107 (109)
99 PF11118 DUF2627: Protein of u 37.6 87 0.0019 21.6 4.4 42 60-101 5-57 (77)
100 KOG1583 UDP-N-acetylglucosamin 37.1 26 0.00056 30.1 2.2 49 63-111 97-145 (330)
101 KOG2922 Uncharacterized conser 36.3 96 0.0021 27.0 5.5 49 58-106 255-309 (335)
102 cd08764 Cyt_b561_CG1275_like N 35.3 1.1E+02 0.0025 24.7 5.5 31 88-118 178-208 (214)
103 PF05454 DAG1: Dystroglycan (D 34.7 13 0.00028 31.5 0.0 18 88-105 154-171 (290)
104 PF04142 Nuc_sug_transp: Nucle 34.5 81 0.0018 25.5 4.6 42 52-93 202-243 (244)
105 TIGR00803 nst UDP-galactose tr 34.3 33 0.00072 26.6 2.3 44 62-105 9-52 (222)
106 PF15471 TMEM171: Transmembran 32.7 53 0.0012 28.1 3.3 26 87-112 163-188 (319)
107 COG4975 GlcU Putative glucose 32.2 11 0.00025 31.8 -0.7 52 51-102 229-284 (288)
108 TIGR01477 RIFIN variant surfac 31.7 49 0.0011 28.9 3.1 35 66-112 309-343 (353)
109 PF11295 DUF3096: Protein of u 30.2 50 0.0011 20.0 2.0 32 68-99 1-32 (39)
110 PF06379 RhaT: L-rhamnose-prot 30.2 1.4E+02 0.003 26.1 5.5 61 44-104 86-154 (344)
111 PRK13499 rhamnose-proton sympo 29.9 1.5E+02 0.0033 25.6 5.7 59 45-104 274-342 (345)
112 PF12768 Rax2: Cortical protei 29.4 62 0.0014 27.1 3.2 37 92-128 243-280 (281)
113 PF07444 Ycf66_N: Ycf66 protei 28.6 48 0.001 23.2 2.0 30 83-112 5-35 (84)
114 PTZ00046 rifin; Provisional 27.7 64 0.0014 28.3 3.1 38 63-112 311-348 (358)
115 TIGR01167 LPXTG_anchor LPXTG-m 27.3 69 0.0015 17.5 2.2 13 85-97 12-24 (34)
116 PF11755 DUF3311: Protein of u 27.1 1.8E+02 0.0038 19.0 4.5 11 65-75 4-14 (66)
117 PRK10655 potE putrescine trans 27.0 3.9E+02 0.0086 22.7 8.9 39 65-103 388-426 (438)
118 TIGR00966 3a0501s07 protein-ex 26.4 3.4E+02 0.0074 21.8 7.1 37 62-99 128-164 (246)
119 PF12270 Cyt_c_ox_IV: Cytochro 25.2 3.1E+02 0.0067 20.8 6.4 19 35-53 12-30 (137)
120 PF03547 Mem_trans: Membrane t 24.4 4.1E+02 0.0089 22.0 7.4 13 64-76 108-120 (385)
121 KOG1442 GDP-fucose transporter 24.2 17 0.00037 31.3 -1.0 41 71-111 295-335 (347)
122 KOG1580 UDP-galactose transpor 23.7 38 0.00082 28.8 0.9 39 66-104 120-158 (337)
123 KOG1619 Cytochrome b [Energy p 22.5 98 0.0021 25.8 3.1 41 59-102 167-222 (245)
124 KOG3653 Transforming growth fa 22.1 1.1E+02 0.0025 28.1 3.6 44 88-131 164-208 (534)
125 PRK13021 secF preprotein trans 21.7 4.8E+02 0.01 22.0 7.2 31 68-99 162-192 (297)
126 COG3476 Tryptophan-rich sensor 21.5 4E+02 0.0086 20.8 7.5 68 33-101 53-122 (161)
127 PF10856 DUF2678: Protein of u 20.1 78 0.0017 23.5 1.9 49 61-109 35-87 (118)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.70 E-value=4e-17 Score=138.94 Aligned_cols=96 Identities=48% Similarity=0.855 Sum_probs=83.7
Q ss_pred HHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccCC
Q 040176 35 ATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSED 113 (142)
Q Consensus 35 ~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~~ 113 (142)
++|.|+ +.++|.+|+|+++++||+++|++.|++|++++++|++++||++++.+++|+++|+.|++++.|.|++|.+.++
T Consensus 259 i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~ 338 (358)
T PLN00411 259 IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQL 338 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 556666 6789999999999999999999999999999999999999999999999999999999999997766644333
Q ss_pred CCCCcccCcccccccccccccc
Q 040176 114 PGVDRQESAAAQKVPLLQSRKN 135 (142)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~ 135 (142)
..+ +| +||.|++.||+|
T Consensus 339 ~~~----~~-~~~~~~~~~~~~ 355 (358)
T PLN00411 339 LSF----SG-KEKTPLLLNGKN 355 (358)
T ss_pred cCc----cc-cccchhhhhccc
Confidence 332 34 888999999988
No 2
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.29 E-value=1.1e-11 Score=101.67 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=71.0
Q ss_pred HHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccC
Q 040176 35 ATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSE 112 (142)
Q Consensus 35 ~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~ 112 (142)
.+|.|+ |.++|.+|++++++.+|+.+|.+.+++|+++.++|++++||+++..+++|++++++|+++..++++++.|-|
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~ 290 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK 290 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 357777 899999999999999999999999999999999999999999999999999999999999988776654444
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.18 E-value=6.3e-11 Score=97.18 Aligned_cols=72 Identities=11% Similarity=0.183 Sum_probs=65.8
Q ss_pred HHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 35 ATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 35 ~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
.++.|+ +.++|.+|++++++.+|+.++.+.+++|+++.+++++++||+++..+++|+++|+.|+++..+.++
T Consensus 218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 345555 889999999999999999999999999999999999999999999999999999999998876543
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.17 E-value=8.9e-11 Score=96.34 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=69.5
Q ss_pred HHHHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 32 FKAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 32 ~~~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
+...+|.|+ +.++|.+|.+++++.+|+.++.+.+++|+++.++|++++||++++.+++|++++++|+++..|.++
T Consensus 214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 445667777 899999999999999999999999999999999999999999999999999999999999888664
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.15 E-value=2.7e-10 Score=97.21 Aligned_cols=96 Identities=28% Similarity=0.499 Sum_probs=84.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhh-------------------------------------
Q 040176 11 DVLPFTATVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVA------------------------------------- 53 (142)
Q Consensus 11 ~~~~~~~m~~~Q~~~ag~~ll~~~~l~~GiS~la~~l~~~~i~------------------------------------- 53 (142)
+.+||++|+++|+.|+|+++++|.++..|++.+.+..||+++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988887777777775442
Q ss_pred ----------ccCchhhhhhhhHHHHHHHHHHHHH------hccccccchhhhhHHHHHHHHHHHhccc
Q 040176 54 ----------ALGPVFVAMFKPLSIAIAVAMGVMF------LGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 54 ----------~~gps~~s~~~~l~PV~a~ila~l~------LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
+++|+.+++..+..|++++++++++ ++|+++..+++|.++.++|+.++...++
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g 159 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHG 159 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccC
Confidence 2468899999999999999999999 6999999999999999999998776554
No 6
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.04 E-value=6.4e-10 Score=90.97 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=67.8
Q ss_pred HHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176 34 AATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 34 ~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~ 107 (142)
..+|.|+ |.++|.+|++++++.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|+++.++.+++
T Consensus 214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 214 ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666 8899999999999999999999999999999999999999999999999999999999998886553
No 7
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.96 E-value=5.8e-09 Score=72.74 Aligned_cols=92 Identities=21% Similarity=0.423 Sum_probs=74.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH------------------HHhch--hHHHHHHHHHhhhccCchhhhhhhhHHH
Q 040176 9 CKDVLPFTATVAMECINVGLNTLFKAA------------------TSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSI 68 (142)
Q Consensus 9 ~~~~~~~~~m~~~Q~~~ag~~ll~~~~------------------l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~P 68 (142)
.++.+|. .+...++..++. ++.... ++.|. +.+++.+|.+++++.+++.++.+.+++|
T Consensus 14 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p 91 (126)
T PF00892_consen 14 LKKISPL-SITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSP 91 (126)
T ss_pred hccCCHH-HHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3445555 677777777774 322221 13333 6889999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176 69 AIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM 102 (142)
Q Consensus 69 V~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~ 102 (142)
+++.++++++++|++++.+++|.++++.|++++.
T Consensus 92 v~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 92 VFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.91 E-value=3.9e-09 Score=86.61 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=62.0
Q ss_pred HHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 35 ATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 35 ~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
.+..|+ +.++|.+|++++++.+|+.+|.+.+++|+++.++|+++++|++++.+++|+++|+.|+.+..-
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334454 889999999999999999999999999999999999999999999999999999888776543
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.90 E-value=2.5e-09 Score=87.53 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=59.1
Q ss_pred HHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176 47 VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 47 l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
++.+++++.||+.++++.++.|++++++|++++||+++..+++|+++++.|++++++.|.+++++
T Consensus 237 ~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 237 VAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 33478999999999999999999999999999999999999999999999999999877655554
No 10
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.89 E-value=2.4e-08 Score=74.50 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=65.3
Q ss_pred HHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHH--HhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176 35 ATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVM--FLGDRLYLGSLVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 35 ~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l--~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~ 107 (142)
.++.|+ ..++|.+|.+++++.+.+.+..+..+.+++..++++. +++|++++.+++|.++|++|++++++.+++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 456666 8899999999999999999999999999888888885 899999999999999999999998875554
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.79 E-value=9.6e-09 Score=83.52 Aligned_cols=60 Identities=28% Similarity=0.467 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHH
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT 100 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l 100 (142)
+.++|.+|.+++++.+++.++.+.+++|++++++|+++++|+++..+++|+++++.|+++
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 889999999999999999999999999999999999999999999999999999999875
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.71 E-value=3.4e-08 Score=78.07 Aligned_cols=64 Identities=19% Similarity=0.448 Sum_probs=59.6
Q ss_pred HHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHH
Q 040176 35 ATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGF 98 (142)
Q Consensus 35 ~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv 98 (142)
.++.|+ +.++|.+|.+++++.+++.++.+.+++|+++.++++++++|+++..+++|.++++.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 345555 7899999999999999999999999999999999999999999999999999999986
No 13
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.59 E-value=1.4e-07 Score=79.87 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=62.0
Q ss_pred hHHHHHHHHH----hhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 41 SHFVFVVYSY----GVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 41 S~la~~l~~~----~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
|.++|.+|++ ++++++|...+.+.++.|++++++|+++++|++++.+++|.++++.|++++++.|
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 8999999995 9999999999999999999999999999999999999999999999999988753
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.51 E-value=5e-07 Score=71.01 Aligned_cols=72 Identities=25% Similarity=0.470 Sum_probs=65.0
Q ss_pred HHHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176 33 KAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 33 ~~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
...++.|+ +.++|.+|.+++++.+++.++.+.++.|+++.++++++++|+++..+++|.++++.|+.+..+.
T Consensus 215 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 215 LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 33445555 5579999999999999999999999999999999999999999999999999999999998876
No 15
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.47 E-value=3e-06 Score=61.44 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
.+++.+|.+++++.+.+.+.....+.++++.++|+++++|++++.+++|.+++++|+.++..
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45788899999999999999888899999999999999999999999999999999987654
No 16
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.42 E-value=1.5e-06 Score=62.10 Aligned_cols=65 Identities=17% Similarity=0.346 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
....+.+|.+++++.++ .++....+.|+++.++++++++|+++..+++|.+++++|+.++.+.+.
T Consensus 45 ~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 45 FGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34779999999999985 888999999999999999999999999999999999999999988654
No 17
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.28 E-value=1.9e-05 Score=58.51 Aligned_cols=66 Identities=17% Similarity=0.340 Sum_probs=55.0
Q ss_pred hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
=.++|.++..++++++.+.+ +.+.-+--+.++++++++++|++++.+++|..+|+.|+...+...+
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 45578888889988876655 4455688889999999999999999999999999999998866543
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.23 E-value=8.7e-07 Score=66.95 Aligned_cols=66 Identities=24% Similarity=0.440 Sum_probs=59.0
Q ss_pred hch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 38 KGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 38 ~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
.|+ +.++..+|..+++.-.++.+.-.--..|+++++++++||+|++++.+++|.++|.+|+.++.+
T Consensus 73 SGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 73 SGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 344 667788999999998899998888899999999999999999999999999999999877543
No 19
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.14 E-value=3.2e-05 Score=63.49 Aligned_cols=63 Identities=13% Similarity=0.285 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
....+.+|.+++++.+++.+++..+..|++++++++++++|+++..+++|.++.+.|+.+..+
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999999999999999999999999999999999999999987654
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.09 E-value=1.6e-05 Score=63.55 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
...+.+|.+++++.++..++...+..|++++++++++++|+++..+++|.++.++|+.+...
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999887654
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.04 E-value=2e-05 Score=64.05 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
....+.++.++.++.+++.++.+.+..|+++.++++++++|+++..+++|.++++.|+++..+.
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 73 NMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 5566778888999999999999999999999999999999999999999999999999987653
No 22
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.04 E-value=1.7e-05 Score=62.60 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
..+.+.++.+++++.+++.++....+.|+++.++++++++|+++..+++|.++.+.|+.+...
T Consensus 57 ~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 57 IGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 346677888999999999999999999999999999999999999999999999999988754
No 23
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.95 E-value=3.8e-05 Score=63.39 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=61.7
Q ss_pred hch-hHHHHHHHHHhhh-ccCchhhhhhhhHHHHHHHHHHHHHhccccccchh----hhhHHHHHHHHHHHhc
Q 040176 38 KGM-SHFVFVVYSYGVA-ALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSL----VGATIISLGFYTVMWG 104 (142)
Q Consensus 38 ~Gi-S~la~~l~~~~i~-~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~i----iG~~lil~Gv~l~~~~ 104 (142)
.|+ ..++|.+|..+.+ +.+++.++....++|+++++.++++++|+.+..++ +|.++++.|+.+....
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 555 7888999999999 99999999999999999999999999999999999 9999999999876543
No 24
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.86 E-value=4.5e-05 Score=62.40 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTV 101 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~ 101 (142)
....+.++++++++.+++++++.....|+++.++++++++|+++..+++|.+++++|+.+.
T Consensus 75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 5566788999999999999999999999999999999999999999999999999999765
No 25
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.83 E-value=0.00022 Score=58.55 Aligned_cols=94 Identities=14% Similarity=0.259 Sum_probs=65.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH---------HHHHhch--hHHHHHHHHHhhhc-cCchhhhhhhhHHHHHHHHHHHH
Q 040176 10 KDVLPFTATVAMECINVGLNTLFK---------AATSKGM--SHFVFVVYSYGVAA-LGPVFVAMFKPLSIAIAVAMGVM 77 (142)
Q Consensus 10 ~~~~~~~~m~~~Q~~~ag~~ll~~---------~~l~~Gi--S~la~~l~~~~i~~-~gps~~s~~~~l~PV~a~ila~l 77 (142)
++..|. .+....+..++.-++.. ..+..|+ ....+.++..++++ .++..++...+..|+++.+++++
T Consensus 28 ~~~~p~-~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~ 106 (299)
T PRK11453 28 HNMPPL-MLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAF 106 (299)
T ss_pred hcCCHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHH
Confidence 344555 66667766554433221 1222233 12233344556665 46788898999999999999999
Q ss_pred HhccccccchhhhhHHHHHHHHHHHhc
Q 040176 78 FLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 78 ~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
+++|+++..+++|.++.++|+++..+.
T Consensus 107 ~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 107 TFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 999999999999999999999887753
No 26
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.77 E-value=0.00067 Score=49.38 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
=.++|.++..++++++.+.+ +.+.-+--+.++++++++++|++++.+++|..+|+.|+...+..++
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34568888888888876655 4556678888999999999999999999999999999999876543
No 27
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.72 E-value=0.0001 Score=62.38 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176 42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM 102 (142)
Q Consensus 42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~ 102 (142)
...+...+.++++.+++++++...+.|++++++++++++|+++..+++|.++++.|+.+..
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 3345556688899999999999999999999999999999999999999999999988764
No 28
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.66 E-value=0.00014 Score=53.14 Aligned_cols=63 Identities=10% Similarity=0.238 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
+.+.-....+++++.+|...++..++-.++..++++++++|+++..+++|.++.+.|.++++|
T Consensus 91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 444445556789999999999999999999999999999999999999999999999987654
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.63 E-value=0.00069 Score=55.41 Aligned_cols=60 Identities=12% Similarity=0.019 Sum_probs=52.9
Q ss_pred HHHHHHHhh-hccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176 44 VFVVYSYGV-AALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 44 a~~l~~~~i-~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
.+.++.++. +..++..++...++.|+++.+++++ ++|+++..+++|.++.++|+++..+.
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 456677777 7888889999999999999999986 69999999999999999999987654
No 30
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00021 Score=59.68 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=64.9
Q ss_pred HHHHHhch--hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176 33 KAATSKGM--SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE 108 (142)
Q Consensus 33 ~~~l~~Gi--S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~ 108 (142)
..++..|+ |.+-|.+=.-+++++++..-+....++|.++.+.++++|+|.+++.|++|.+.++.+..=.++.-+|+
T Consensus 210 ~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 210 PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 34444555 88999999999999999999999999999999999999999999999999999998877555544443
No 31
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.58 E-value=0.00026 Score=55.55 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHH-HHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGV-MFLGDRLYLGSLVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~-l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~ 107 (142)
.......|..++++.++..++...+..|+++.++++ ++++|+++..+++|.++.+.|++++.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 556677888899999999999999999999999997 7779999999999999999999998875544
No 32
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.44 E-value=0.00035 Score=59.73 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176 43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
.-|.+....++..+|++..........++.++++++.++++++..++|.++|+.|+++++...+++.++
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 334555667788899999999999999999999999999999999999999999999988766555444
No 33
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.43 E-value=0.0013 Score=54.30 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=63.3
Q ss_pred HhchhHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176 37 SKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE 108 (142)
Q Consensus 37 ~~GiS~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~ 108 (142)
+...+.++.....+++++.||...++...+--+++.++++++.++++++.+++|.++++.|+.+..+.|+|+
T Consensus 231 ~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 231 FSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 333366666677788999999999999999999999999999999999999999999999999988877664
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.40 E-value=0.00058 Score=56.01 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=46.2
Q ss_pred ccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176 54 ALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 54 ~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
..++..++...++.|+++.++++++++|+++..+++|.++.++|+++....
T Consensus 88 ~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 88 RRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred cccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 456778889999999999999999999999999999999999999887653
No 35
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.0011 Score=48.36 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 42 HFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 42 ~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
.++|.+...+++++.-..+ +.|.-+-.+.+++.++++++|++++.+++|..++++|+...++..
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 3557778888888764443 677778888999999999999999999999999999999877643
No 36
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.25 E-value=0.0069 Score=44.13 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176 41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM 102 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~ 102 (142)
-.++|.+...++++++...+ +.+.-+-.+.+++.++++++|++++.+++|..+++.|+...+
T Consensus 45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34567788888888775544 667778888999999999999999999999999999998764
No 37
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.21 E-value=0.0015 Score=47.19 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
=.++|.+...++++++...+ +.|.-+-.+.+++.++++.+|++++.+++|..+++.|+...+.
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34567778888887765544 6677788899999999999999999999999999999988654
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.15 E-value=0.00097 Score=53.20 Aligned_cols=46 Identities=7% Similarity=0.105 Sum_probs=40.5
Q ss_pred HHHHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHH
Q 040176 33 KAATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMF 78 (142)
Q Consensus 33 ~~~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~ 78 (142)
..+++.|+ +.++|.+|++++++.+|+.++.+.|++|++++++|++.
T Consensus 209 ~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 209 LLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555 88999999999999999999999999999999999864
No 39
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.76 E-value=0.0073 Score=49.19 Aligned_cols=73 Identities=12% Similarity=0.232 Sum_probs=58.9
Q ss_pred HHhchhHHHHHHHH----HhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176 36 TSKGMSHFVFVVYS----YGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE 108 (142)
Q Consensus 36 l~~GiS~la~~l~~----~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~ 108 (142)
+..++..+.|.++| .+++++.|+.--+....-.++|.++++++|+.+++..|+++..+.++|+.++.......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 33344444454444 45677899999999999999999999999999999999999999999999887765544
No 40
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.65 E-value=0.006 Score=52.21 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176 44 VFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 44 a~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~ 107 (142)
+-.++..+.++++.+.+.+..-..-+++.++++++|+++.++.|++|.+++++|+.++.+....
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 3445566677788888888888899999999999999999999999999999999988776533
No 41
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.59 E-value=0.0011 Score=56.01 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176 42 HFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 42 ~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
..+-.+..++..+++-+-++..+...|+|+.++||++|+|+.+....+|.++.+.|+.++.|.
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 344455566667777777788888999999999999999999999999999999999887653
No 42
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.58 E-value=0.0081 Score=50.72 Aligned_cols=73 Identities=11% Similarity=0.172 Sum_probs=66.0
Q ss_pred HHHHHhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 33 KAATSKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 33 ~~~l~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
....-.|+ |.+...+|..+-+++.=+..+...|+.|..-+++|+++.+|+++..+.+.-++|-+|+.++.+..
T Consensus 212 ~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 212 LLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566 99999999999999999999999999999999999999999999999999999999998877654
No 43
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.55 E-value=0.0067 Score=42.41 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHH
Q 040176 41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATII 94 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~li 94 (142)
-.++|.++.+++++...+.+ +.+.-+-.+.++++++++.+|++++.+++|..+|
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 45668899999999877766 5666788899999999999999999999998775
No 44
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.50 E-value=0.001 Score=52.23 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHH
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT 100 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l 100 (142)
+.....+-.+++++.+++..+....+.++++.++++++++|+++..+++|+.+++.|+++
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 334444556778889999999999999999999999999999999999999999998764
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.29 E-value=0.006 Score=50.35 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=52.6
Q ss_pred HHHHHhhhccCchhhhhhhh-HHHHHHHHHHHHHhccccccch----hhhhHHHHHHHHHHHhcc
Q 040176 46 VVYSYGVAALGPVFVAMFKP-LSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFYTVMWGK 105 (142)
Q Consensus 46 ~l~~~~i~~~gps~~s~~~~-l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~l~~~~k 105 (142)
..|..++++.|.+.+-...+ +++++.++.+.++++|+.+..+ ++|.++++.|+++....+
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 77788899999988876666 8889999999999999999999 999999999998875543
No 46
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.26 E-value=0.016 Score=49.03 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
.-..+|.|+++.--...+|.=++++|.+-+++|.+|++|+++..|++..++-.+|+..-.|..+
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 3467888999988888999999999999999999999999999999999999999988777554
No 47
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.25 E-value=0.017 Score=47.65 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
..++-.+-++++++++...-.++....|+.+.++++++++++.+..++++.+++.+|+.+....+.+..+.
T Consensus 74 ~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 74 FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 44455667788888888888899999999999999999999999999999999999999988765444443
No 48
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.20 E-value=0.02 Score=47.93 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTV 101 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~ 101 (142)
|.++..+...-+...||...|+.+----.||++.++++.+++++.+||+|+++++.++..=
T Consensus 251 s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 251 SCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 6666666666777889999999999999999999999999999999999999999998763
No 49
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.41 E-value=0.058 Score=39.68 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=52.0
Q ss_pred HHHHHhchhHHHHHHHHHhhhccCchhhhhh-hhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHH
Q 040176 33 KAATSKGMSHFVFVVYSYGVAALGPVFVAMF-KPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT 100 (142)
Q Consensus 33 ~~~l~~GiS~la~~l~~~~i~~~gps~~s~~-~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l 100 (142)
+.++-..++..+-++|.+.+++..-+.+.-. +.+.-++|++.++++..|..+...++|++++++|+.+
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4444444577788899999998876665544 4677888999998766666677889999999999865
No 50
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.67 E-value=0.025 Score=48.05 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=55.6
Q ss_pred Hhch-hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176 37 SKGM-SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM 102 (142)
Q Consensus 37 ~~Gi-S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~ 102 (142)
++|+ +.+...+...+++.--+-..|++.+..-+++++.-++|.+|.+|+++++|++++++......
T Consensus 258 ~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 258 NLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred EehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 5566 55666777778877677778999999999999999999999999999999999988766543
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.65 E-value=0.15 Score=42.66 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhhhccCchhhh-hhhhHHHHHHHHHHHHHhccccccch----hhhhHHHHHHHHHHHhcccccccc
Q 040176 41 SHFVFVVYSYGVAALGPVFVA-MFKPLSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s-~~~~l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
=.++-..+..+.++.|.+++. +.+-++=+.++++++++++|.-+..+ +++.++++.|+++..+.++++.+.
T Consensus 55 W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~ 130 (269)
T PF06800_consen 55 WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKS 130 (269)
T ss_pred HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 445666777888888887763 55667888899999999999888766 557789999999988876665544
No 52
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.54 E-value=0.0056 Score=52.14 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=54.2
Q ss_pred HHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176 49 SYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 49 ~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
.+++++++|..-+....+=-++..+.+++++++++++.+++|.++.+.|++++++.|.+++++
T Consensus 253 f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 253 FLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 367788888877777777777778889999999999999999999999999999998877665
No 53
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.91 E-value=0.22 Score=43.80 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccCCCCCCc
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGVDR 118 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~~~~~~~ 118 (142)
+.++-.+|-|+.-..+|..++.-..++-=.+++...++-+...++..++|.+.|+.|.++++......++.+.+...+
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~~~~~~~r 405 (416)
T KOG2765|consen 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKDPLMAIER 405 (416)
T ss_pred HHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccccccchheee
Confidence 778888999999889998887777777667899999999999999999999999999999998877766665555444
No 54
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.32 E-value=0.041 Score=45.13 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176 46 VVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 46 ~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
+.|-.++++++|+.+|+..-....|..+++++.|+++.....++.+++-+.|+..+.+.
T Consensus 68 Y~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 68 YLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred cHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 47888999999999999999999999999999999999999999999999998766543
No 55
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=92.83 E-value=0.2 Score=42.03 Aligned_cols=49 Identities=27% Similarity=0.447 Sum_probs=39.4
Q ss_pred cCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 55 LGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 55 ~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
.+++.++-+.-+.-++..++|..+++|+++...++|.++++.|..+...
T Consensus 74 ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 74 APASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred hhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3444555555566678899999999999999999999999999876543
No 56
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=92.07 E-value=0.08 Score=46.51 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176 43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE 108 (142)
Q Consensus 43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~ 108 (142)
++-..++-++++...+...+...-.-+|+.++|.+|.+|++++...++.++.++|+++++.++.+.
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 345678888888888888888889999999999999999999999999999999999887765443
No 57
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.53 E-value=0.46 Score=40.73 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=57.3
Q ss_pred HHHhchhHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176 35 ATSKGMSHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 35 ~l~~GiS~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~ 107 (142)
++|.-.+.++-.+-.+-+++-||..-++.+-.=-+++.+++.+..+.++++.+++|..+++.|+++-..-|.+
T Consensus 245 ~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 245 LLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 3344445555556666677788888888888888999999999999999999999999999999875544433
No 58
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.43 E-value=0.78 Score=39.30 Aligned_cols=54 Identities=15% Similarity=0.347 Sum_probs=47.2
Q ss_pred hhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 52 VAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 52 i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
++--|+..++..+-.--.+|.++++++...+++..+.-|+++++.|+++-...|
T Consensus 281 I~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 281 IKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 344588888888888889999999999999999999999999999999977666
No 59
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=90.90 E-value=1.8 Score=35.36 Aligned_cols=57 Identities=7% Similarity=0.030 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
....+.++.+++++.+++.++......|+++.+++. |+.. ...+..+.++|+++..+
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheeee
Confidence 344566778899999999999999999999998873 5543 45567778888887653
No 60
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=90.82 E-value=0.84 Score=39.56 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=59.3
Q ss_pred HhchhHHHHHHHHH----hhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176 37 SKGMSHFVFVVYSY----GVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 37 ~~GiS~la~~l~~~----~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
-.++..+.|.++|+ +..++.|+.-.....+=-..|.++..++|+++++..||...++...|+.++++...+.+..
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a 172 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA 172 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 33445566777775 3356788888888889999999999999999999999999999999999999554443333
No 61
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.15 E-value=0.066 Score=44.84 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhccCchhhh-hhhhHHHHHHHHHHHHHhccccccch----hhhhHHHHHHHHHHHhccccccccCCCCC
Q 040176 43 FVFVVYSYGVAALGPVFVA-MFKPLSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFYTVMWGKAKEEVSEDPGV 116 (142)
Q Consensus 43 la~~l~~~~i~~~gps~~s-~~~~l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~l~~~~k~~~~~~~~~~~ 116 (142)
++...+.++++..|.+++. ..+-.+-+-+.+++++.++|.-+..+ .+..++++.|+++..|.++.++++++.-+
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n 149 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSN 149 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHh
Confidence 4455566777788887774 44456778889999999999999988 45668899999998887776666554443
No 62
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=89.04 E-value=1.6 Score=37.87 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccc
Q 040176 62 MFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEV 110 (142)
Q Consensus 62 ~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~ 110 (142)
....+..+++.+.++.+.+-+++....+|+.+++..++++...+.++++
T Consensus 281 f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~~~ 329 (345)
T KOG2234|consen 281 FSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARDAQ 329 (345)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccccc
Confidence 3444777889999999999999999999999999999998866655533
No 63
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.79 E-value=3 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=28.6
Q ss_pred HHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 72 VAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 72 ~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
+.++++.++|++.|.++.|.+++..|++++.+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45699999999999999999999999998754
No 64
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=88.41 E-value=0.32 Score=35.63 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=26.9
Q ss_pred HHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176 72 VAMGVMFLGDRLYLGSLVGATIISLGFYTV 101 (142)
Q Consensus 72 ~ila~l~LgE~l~l~~iiG~~lil~Gv~l~ 101 (142)
+.+++++++|++++.++.|.++++.+++++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 566889999999999999999999998865
No 65
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=85.94 E-value=0.89 Score=38.83 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=43.1
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHH--hcccc
Q 040176 56 GPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVM--WGKAK 107 (142)
Q Consensus 56 gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~--~~k~~ 107 (142)
.+-.+++...+=-.+..+++.+...++.++.+++|+++++.|.++.. |.+.+
T Consensus 267 ~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 267 SSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred cceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 45566777778888999999999999999999999999999987654 55443
No 66
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=85.35 E-value=5.8 Score=29.42 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhhccCchhhhh-hhhHHHHHHHHHHHHHhccccccch-hhhhHHHH
Q 040176 18 TVAMECINVGLNTLFKAATSKGMSHFVFVVYSYGVAALGPVFVAM-FKPLSIAIAVAMGVMFLGDRLYLGS-LVGATIIS 95 (142)
Q Consensus 18 m~~~Q~~~ag~~ll~~~~l~~GiS~la~~l~~~~i~~~gps~~s~-~~~l~PV~a~ila~l~LgE~l~l~~-iiG~~lil 95 (142)
|.++|=. -.+.+.+...+=-+++..+-.+|.+-+++.+-+.+.= -+.+..+|+.+.+. .|||++..+. ++|+.+++
T Consensus 40 ~~~lqe~-~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~-~LGE~~~g~~a~lGt~liv 117 (125)
T KOG4831|consen 40 MIALQEM-KTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGK-ALGEETQGGLALLGTSLIV 117 (125)
T ss_pred HHHHHHH-HHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHH-HhccccccceeehhhhHHh
Confidence 4444422 2344444444444556666778888888877555443 33466778888888 4888887755 89999999
Q ss_pred HHHHHH
Q 040176 96 LGFYTV 101 (142)
Q Consensus 96 ~Gv~l~ 101 (142)
+|+.++
T Consensus 118 ~Gi~Lc 123 (125)
T KOG4831|consen 118 FGIWLC 123 (125)
T ss_pred hhhhhe
Confidence 999875
No 67
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=82.85 E-value=2.3 Score=35.63 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=39.6
Q ss_pred hhhccCchhhhhhhhHHHHHHHHHHHHHhccccccch----hhhhHHHHHHHH
Q 040176 51 GVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFY 99 (142)
Q Consensus 51 ~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~ 99 (142)
+.++.|.+.+-.+.-+..+++++-+.++++|+-+.++ ++|.++++.|..
T Consensus 215 s~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 215 SAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 3345677777778889999999999999999998776 678888877754
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=82.78 E-value=9.2 Score=33.07 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhcccc---ccc----hhhhhHHHHHHHHHHHhc
Q 040176 41 SHFVFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDRL---YLG----SLVGATIISLGFYTVMWG 104 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~l---~l~----~iiG~~lil~Gv~l~~~~ 104 (142)
=.++-..|..++++.|-+.. .+.+=++-+++++++.++++|-- +-. .++|.++++.|+.+..+.
T Consensus 83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677778886655 45666888899999999999765 222 388999999999998873
No 69
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=81.00 E-value=2.4 Score=31.13 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=27.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhcccc---ccchhhhhHHHHHHHHHH
Q 040176 57 PVFVAMFKPLSIAIAVAMGVMFLGDRL---YLGSLVGATIISLGFYTV 101 (142)
Q Consensus 57 ps~~s~~~~l~PV~a~ila~l~LgE~l---~l~~iiG~~lil~Gv~l~ 101 (142)
...++.+.|+.|+++++++.++. ..+ .+..++++++.+..-|+.
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l~~~~~~ 113 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGLALGFLI 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999998877543 332 334455554444433333
No 70
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=80.31 E-value=2.4 Score=35.49 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=45.5
Q ss_pred HHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 47 VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 47 l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
.-.||++-++.+.-|+.--+.-.-..+.|.++++|+.+..++...++-+..-.+....|
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44689998999888888888888889999999999999999877766544333333333
No 71
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=79.00 E-value=3.8 Score=31.63 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=20.5
Q ss_pred ccCchhhhhhhhHHHHHHHHHHHHH
Q 040176 54 ALGPVFVAMFKPLSIAIAVAMGVMF 78 (142)
Q Consensus 54 ~~gps~~s~~~~l~PV~a~ila~l~ 78 (142)
..+..+++...|+.|.++++++.+.
T Consensus 71 EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 71 EKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999998887653
No 72
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=77.70 E-value=13 Score=32.32 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=43.2
Q ss_pred hccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176 53 AALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTV 101 (142)
Q Consensus 53 ~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~ 101 (142)
.+++....|++--.-=+.+.++|.+.++|.++...++|.+++..|+..-
T Consensus 265 ~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 265 SRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 4566777777777888889999999999999999999999999999876
No 73
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.01 E-value=0.43 Score=41.10 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=43.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccCCCCC
Q 040176 56 GPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSEDPGV 116 (142)
Q Consensus 56 gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~~~~~ 116 (142)
.++.++..--+.-++.+++|..+|.|++++...+|.++++.|-.+.-- +.++.++.+..|
T Consensus 89 PasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~-haP~e~~i~t~~ 148 (335)
T KOG2922|consen 89 PASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI-HAPKEQEIESVE 148 (335)
T ss_pred hHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE-ecCcccccccHH
Confidence 445555555577788899999999999999999999999999765433 333333433333
No 74
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=75.82 E-value=4.4 Score=34.97 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 66 LSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 66 l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
-.-+|+-+++.-+|+.+++..+|+|...+.+|+..+-.
T Consensus 121 aviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 121 AVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred chhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 45689999999999999999999999999999887643
No 75
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.93 E-value=9.5 Score=32.76 Aligned_cols=60 Identities=7% Similarity=0.043 Sum_probs=46.7
Q ss_pred HHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccc
Q 040176 49 SYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKE 108 (142)
Q Consensus 49 ~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~ 108 (142)
.||....+++..++.--..-..+.+-..++.+++.++..++|..+.++|-.+++..+.++
T Consensus 246 ~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~ 305 (314)
T KOG1444|consen 246 FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK 305 (314)
T ss_pred HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence 477777777766666656666677778888999999999999999999887777766443
No 76
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=74.60 E-value=11 Score=31.62 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHhhhccCchhhhhhh-hHHHHHHHHHHHHHhccccccch------hhhhHHHHHHHHHHHhcccc
Q 040176 48 YSYGVAALGPVFVAMFK-PLSIAIAVAMGVMFLGDRLYLGS------LVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 48 ~~~~i~~~gps~~s~~~-~l~PV~a~ila~l~LgE~l~l~~------iiG~~lil~Gv~l~~~~k~~ 107 (142)
.|+++++-+++.+.-.+ -+-..++++-+.++.+|.-+... ..|.++++.|+++.+..|..
T Consensus 230 LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~ 296 (300)
T PF05653_consen 230 LNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDK 296 (300)
T ss_pred HHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCch
Confidence 34566666666554333 34445566667778887655432 78889999999987765543
No 77
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=73.10 E-value=11 Score=28.09 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhH-HHHHHHHHHHH----HhccccccchhhhhHHHHHHHHH
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPL-SIAIAVAMGVM----FLGDRLYLGSLVGATIISLGFYT 100 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l-~PV~a~ila~l----~LgE~l~l~~iiG~~lil~Gv~l 100 (142)
+.+......+.+.++|++.+....-. +-+.+.+++.+ .-.+++++.+++|.++++.|+++
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44445555667777887766555443 33444555553 34578888999999999999864
No 78
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=72.25 E-value=0.69 Score=39.88 Aligned_cols=63 Identities=11% Similarity=0.228 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
+...+=||.+.++.-++-++...=.++|..+++.+|.-|+.+|.-..-..+|.+|++++.+..
T Consensus 96 ~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 96 LDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred cccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 333344555555555566666777899999999999999999998888888888887766643
No 79
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.77 E-value=1.3 Score=38.01 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHH
Q 040176 47 VYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYT 100 (142)
Q Consensus 47 l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l 100 (142)
.-+.|+++.|.+|--.--.+..+|++++.+++|+++=+..-..+..+|+.|..+
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 456788888887777777799999999999999999999888888888887644
No 80
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=67.52 E-value=11 Score=28.67 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=17.6
Q ss_pred chhhhhhhhHHHHHHHHHHHHH
Q 040176 57 PVFVAMFKPLSIAIAVAMGVMF 78 (142)
Q Consensus 57 ps~~s~~~~l~PV~a~ila~l~ 78 (142)
..+++.+.|+.|+++.+++.++
T Consensus 74 llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 74 LLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999998887653
No 81
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=67.01 E-value=27 Score=31.38 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=18.8
Q ss_pred cccchhhhhHHHHHHHHHHHhcc
Q 040176 83 LYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 83 l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
++..|++..++++.|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 68889999999999988765543
No 82
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=66.64 E-value=1.3 Score=37.77 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccch
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGS 87 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~ 87 (142)
-.++.++=+-.+++...++.-+..-+.|.+++++++++.+|+.+...
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~ 139 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT 139 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE
Confidence 44556666677788889999999999999999999999999987755
No 83
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.83 E-value=47 Score=25.54 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.6
Q ss_pred cccccchhhhhHHHHHHHHHHHhcc
Q 040176 81 DRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 81 E~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
.++++..++|.+++++|+++..+.+
T Consensus 124 ~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 124 RPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccc
Confidence 6778888999999999977766654
No 84
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=61.45 E-value=19 Score=26.50 Aligned_cols=30 Identities=20% Similarity=0.520 Sum_probs=19.2
Q ss_pred HHHHHHHhccccccchhhhhHHHHHHHHHHH
Q 040176 72 VAMGVMFLGDRLYLGSLVGATIISLGFYTVM 102 (142)
Q Consensus 72 ~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~ 102 (142)
+++|.+.+++ --+..++|..+++.|++...
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 5567777777 22334778888888866443
No 85
>PRK02237 hypothetical protein; Provisional
Probab=60.34 E-value=38 Score=24.87 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhhccC---chhhhhhhhHHHH-HHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 41 SHFVFVVYSYGVAALG---PVFVAMFKPLSIA-IAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 41 S~la~~l~~~~i~~~g---ps~~s~~~~l~PV-~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
..++..+|-|....-. ..++=+-+-.+-+ .+.+-.+..=+.+++...++|+++++.|+.++.+..+
T Consensus 39 g~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 39 GALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 5556666666666333 1222222223333 3346678888888999999999999999988766543
No 86
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=59.35 E-value=2.7 Score=36.12 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccch
Q 040176 43 FVFVVYSYGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGS 87 (142)
Q Consensus 43 la~~l~~~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~ 87 (142)
++..+|.|.+.+.|+++-.+ +..-.|++++.++|--.+.+.+
T Consensus 120 L~vW~Ym~lLr~~GAs~Wti---LaFcLAF~LaivlLIIAv~L~q 161 (381)
T PF05297_consen 120 LGVWFYMWLLRELGASFWTI---LAFCLAFLLAIVLLIIAVLLHQ 161 (381)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677888889876554 4444556666665554444433
No 87
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=58.48 E-value=12 Score=31.95 Aligned_cols=50 Identities=8% Similarity=-0.009 Sum_probs=37.6
Q ss_pred HhhhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHH
Q 040176 50 YGVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTV 101 (142)
Q Consensus 50 ~~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~ 101 (142)
-.++.-|+++......-.-.++.++ ..+|=.++|.-.+.-+.+..|.++.
T Consensus 248 il~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 3456678887777776666777666 4456669999999999999998875
No 88
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=56.74 E-value=24 Score=29.23 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHhccccc
Q 040176 88 LVGATIISLGFYTVMWGKAKE 108 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k~~~ 108 (142)
.+|.++++.|..+..+-|.++
T Consensus 119 ~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 119 YIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHheeeecCCC
Confidence 899999999988877766544
No 89
>PF15102 TMEM154: TMEM154 protein family
Probab=55.91 E-value=11 Score=29.04 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHhcccccc
Q 040176 88 LVGATIISLGFYTVMWGKAKEE 109 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k~~~~ 109 (142)
+++.+|++..++++.+.|+|..
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 4455666677777766554433
No 90
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=54.24 E-value=39 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=20.4
Q ss_pred chhhhhHHHHHHHHHHHhccccccccC
Q 040176 86 GSLVGATIISLGFYTVMWGKAKEEVSE 112 (142)
Q Consensus 86 ~~iiG~~lil~Gv~l~~~~k~~~~~~~ 112 (142)
.|++...+++.|+.++.+.++|.++.+
T Consensus 255 gqilSi~mIl~Gi~~~~~~~~k~~~~~ 281 (287)
T COG0682 255 GQILSIPMILLGLWLIIYLYKKAKKKP 281 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 688899999999988877665544443
No 91
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=51.05 E-value=71 Score=26.27 Aligned_cols=23 Identities=13% Similarity=0.509 Sum_probs=18.2
Q ss_pred cccchhhhhHHHHHHHHHHHhcc
Q 040176 83 LYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 83 l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
++..|+++..+++.|+.+..+.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999988765443
No 92
>PRK15049 L-asparagine permease; Provisional
Probab=50.88 E-value=1.8e+02 Score=25.76 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=5.1
Q ss_pred hhHHHHHHHH
Q 040176 64 KPLSIAIAVA 73 (142)
Q Consensus 64 ~~l~PV~a~i 73 (142)
.|..++++.+
T Consensus 422 ~p~~~~~~l~ 431 (499)
T PRK15049 422 APFTSWLTLL 431 (499)
T ss_pred ccHHHHHHHH
Confidence 4555555543
No 93
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=50.27 E-value=23 Score=26.58 Aligned_cols=12 Identities=8% Similarity=-0.153 Sum_probs=7.3
Q ss_pred HHHhccccccch
Q 040176 76 VMFLGDRLYLGS 87 (142)
Q Consensus 76 ~l~LgE~l~l~~ 87 (142)
|+|..|..+.+.
T Consensus 25 W~fR~ED~tpWN 36 (125)
T PF15048_consen 25 WFFRVEDATPWN 36 (125)
T ss_pred HheecCCCCCcc
Confidence 566666666544
No 94
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=49.11 E-value=69 Score=26.33 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=19.7
Q ss_pred cccchhhhhHHHHHHHHHHHhcccc
Q 040176 83 LYLGSLVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 83 l~l~~iiG~~lil~Gv~l~~~~k~~ 107 (142)
++..|+++.++++.|+.+..+.+++
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~~~~ 261 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWAYRK 261 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888999999999998877655433
No 95
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=45.12 E-value=24 Score=25.86 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhhccCch--hh-hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 41 SHFVFVVYSYGVAALGPV--FV-AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps--~~-s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
..++..+|-+....-.+. ++ ++|--+--+.+.+-++.+=+++++...++|+.+++.|+.++.+..+
T Consensus 38 G~~~L~lfg~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 38 GALSLALFGWLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHHHHHHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 445555555555433221 11 1222222344455577777888888999999999999988776543
No 96
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=44.53 E-value=1e+02 Score=25.57 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=19.1
Q ss_pred cccchhhhhHHHHHHHHHHHhccc
Q 040176 83 LYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 83 l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
++..|++...+++.|+.+..+.++
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 688899999999999887655443
No 97
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=42.25 E-value=18 Score=21.98 Aligned_cols=19 Identities=42% Similarity=0.803 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHhcccc
Q 040176 89 VGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 89 iG~~lil~Gv~l~~~~k~~ 107 (142)
+|.++++.|++++.|++++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 3556666777777666553
No 98
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=39.24 E-value=57 Score=23.93 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=42.6
Q ss_pred HHHHHhchhHHHHHHHHHhhhccCchhh----hhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccc
Q 040176 33 KAATSKGMSHFVFVVYSYGVAALGPVFV----AMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 33 ~~~l~~GiS~la~~l~~~~i~~~gps~~----s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~ 106 (142)
++........++..+|-|......+... +++--+--+.+.+-.++.=+-+++...++|++++++|+.++.+..+
T Consensus 30 ks~~~~l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 30 KSALWLLPGALSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred CchHhHHHHHHHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 3444444466666777777665544311 1222222223333355555666777779999999999877766543
No 99
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=37.60 E-value=87 Score=21.63 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhccccc----------cch-hhhhHHHHHHHHHH
Q 040176 60 VAMFKPLSIAIAVAMGVMFLGDRLY----------LGS-LVGATIISLGFYTV 101 (142)
Q Consensus 60 ~s~~~~l~PV~a~ila~l~LgE~l~----------l~~-iiG~~lil~Gv~l~ 101 (142)
.+....++|......++-...+.+- |.+ +.|.++...|+.+.
T Consensus 5 iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi 57 (77)
T PF11118_consen 5 IALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFI 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4556667777766665554433321 222 67778888888764
No 100
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=37.13 E-value=26 Score=30.15 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176 63 FKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 63 ~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
+-...++-+.++++++++.+-+..|+...+++-+|+++.+..+.++-+.
T Consensus 97 fRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 97 FRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred EecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 3346788899999999999999999999999999999988876554443
No 101
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.31 E-value=96 Score=26.99 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=35.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhccccccch------hhhhHHHHHHHHHHHhccc
Q 040176 58 VFVAMFKPLSIAIAVAMGVMFLGDRLYLGS------LVGATIISLGFYTVMWGKA 106 (142)
Q Consensus 58 s~~s~~~~l~PV~a~ila~l~LgE~l~l~~------iiG~~lil~Gv~l~~~~k~ 106 (142)
..+.+|+-+-..++.+.+.++..|--.... +.|...++.|+++....|.
T Consensus 255 lV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd 309 (335)
T KOG2922|consen 255 IVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKD 309 (335)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecc
Confidence 344555656667778888899988776654 7888999999988755443
No 102
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.34 E-value=1.1e+02 Score=24.67 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHhccccccccCCCCCCc
Q 040176 88 LVGATIISLGFYTVMWGKAKEEVSEDPGVDR 118 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k~~~~~~~~~~~~~ 118 (142)
.+|.++++.|++...-...++=||++.+||+
T Consensus 178 ~~gl~~~~fg~~V~~~~~~~~~kr~~~~~~~ 208 (214)
T cd08764 178 FIGIVLVIFGGLVVYLVTEPDYKRIELPEEE 208 (214)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCCCCchhh
Confidence 8899999999887666666666676666655
No 103
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=34.74 E-value=13 Score=31.52 Aligned_cols=18 Identities=11% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhcc
Q 040176 88 LVGATIISLGFYTVMWGK 105 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k 105 (142)
++.++|+++|++.+.+++
T Consensus 154 VI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 154 VIAAILLIAGIIACICYR 171 (290)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 455666677777665544
No 104
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=34.49 E-value=81 Score=25.53 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=31.3
Q ss_pred hhccCchhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHH
Q 040176 52 VAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATI 93 (142)
Q Consensus 52 i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~l 93 (142)
+++.+...=+.-.-+.-+++.++++++++.+++...++|+++
T Consensus 202 ~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 202 LKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 344444444445557778889999999999999999999865
No 105
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=34.31 E-value=33 Score=26.57 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 62 MFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 62 ~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
.+.+..+++..+.++.+.+++.+..+++..+++..|+....+.+
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~ 52 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGD 52 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhH
Confidence 45567788999999999999999999999999999988755544
No 106
>PF15471 TMEM171: Transmembrane protein family 171
Probab=32.65 E-value=53 Score=28.06 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHhccccccccC
Q 040176 87 SLVGATIISLGFYTVMWGKAKEEVSE 112 (142)
Q Consensus 87 ~iiG~~lil~Gv~l~~~~k~~~~~~~ 112 (142)
|++|-++++.|+.++.-.+-|+++..
T Consensus 163 QImGPlIVl~GLCFFVVAHvKKr~nl 188 (319)
T PF15471_consen 163 QIMGPLIVLVGLCFFVVAHVKKRNNL 188 (319)
T ss_pred hhhhhHHHHHhhhhhheeeeeeccCC
Confidence 39999999999998776665544443
No 107
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=32.15 E-value=11 Score=31.75 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=37.3
Q ss_pred hhhccCchhhhhhhhHHHHHHHHHHHHHhccccccch----hhhhHHHHHHHHHHH
Q 040176 51 GVAALGPVFVAMFKPLSIAIAVAMGVMFLGDRLYLGS----LVGATIISLGFYTVM 102 (142)
Q Consensus 51 ~i~~~gps~~s~~~~l~PV~a~ila~l~LgE~l~l~~----iiG~~lil~Gv~l~~ 102 (142)
+.++.|-...-.+.-+..+++++=+.++|+|+-+-++ ++|.++++.|..+.-
T Consensus 229 a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 229 AAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred hhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 3344554444444456778889999999999999988 778888888766543
No 108
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=31.75 E-value=49 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccC
Q 040176 66 LSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSE 112 (142)
Q Consensus 66 l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~ 112 (142)
-.|+.+.++|++ =.+||..=+||++|+++|.+.++
T Consensus 309 ~t~IiaSiIAIv------------vIVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 309 YTPIIASIIAIL------------IIVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhcchhHH
Confidence 456666666665 34566667899998887766654
No 109
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=30.22 E-value=50 Score=19.97 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccccccchhhhhHHHHHHHH
Q 040176 68 IAIAVAMGVMFLGDRLYLGSLVGATIISLGFY 99 (142)
Q Consensus 68 PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~ 99 (142)
|+.+.+.+.+.+--+--+.-+++.-+++.|+.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLL 32 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766666667888888888875
No 110
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=30.22 E-value=1.4e+02 Score=26.07 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHHhhhccCchhh-hhhhhHHHHHHHHHHHHHhccc---c----ccchhhhhHHHHHHHHHHHhc
Q 040176 44 VFVVYSYGVAALGPVFV-AMFKPLSIAIAVAMGVMFLGDR---L----YLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 44 a~~l~~~~i~~~gps~~-s~~~~l~PV~a~ila~l~LgE~---l----~l~~iiG~~lil~Gv~l~~~~ 104 (142)
+=..|-..++++|-+.- ++..=+.-++.+++--++.++- + ....++|.++++.|+.+.-+.
T Consensus 86 GgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 86 GGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred chhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 34455567777775543 5555667777777766665432 1 223489999999999987765
No 111
>PRK13499 rhamnose-proton symporter; Provisional
Probab=29.89 E-value=1.5e+02 Score=25.65 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=37.0
Q ss_pred HHHHHHhhhccCchhhhh---hh-hHHHHHHHHHHHHHhcccccc------chhhhhHHHHHHHHHHHhc
Q 040176 45 FVVYSYGVAALGPVFVAM---FK-PLSIAIAVAMGVMFLGDRLYL------GSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 45 ~~l~~~~i~~~gps~~s~---~~-~l~PV~a~ila~l~LgE~l~l------~~iiG~~lil~Gv~l~~~~ 104 (142)
+.+|.++-++.|...... .. -+.-+++.+=+. +++|.-+- .-++|.++++.|..+....
T Consensus 274 ~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 274 FFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 344444555555443333 22 344466666677 59999983 2389999999998876554
No 112
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.37 E-value=62 Score=27.06 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhccccccccCCCCCCcccCcc-ccccc
Q 040176 92 TIISLGFYTVMWGKAKEEVSEDPGVDRQESAA-AQKVP 128 (142)
Q Consensus 92 ~lil~Gv~l~~~~k~~~~~~~~~~~~~~~~~~-~~~~~ 128 (142)
+++++|+++...+++++...+++...+.+++. =+++|
T Consensus 243 ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~~~~~~vp 280 (281)
T PF12768_consen 243 LLVLIGIILAYIRRRRQGYVPAPTSPRIDEDEMMQRVP 280 (281)
T ss_pred HHHHHHHHHHHHHhhhccCcCCCcccccCcccccccCC
Confidence 44556776665555555555554443333332 34444
No 113
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=28.64 E-value=48 Score=23.16 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=18.7
Q ss_pred cccchhhhhHHHHHHHHHHHhcc-ccccccC
Q 040176 83 LYLGSLVGATIISLGFYTVMWGK-AKEEVSE 112 (142)
Q Consensus 83 l~l~~iiG~~lil~Gv~l~~~~k-~~~~~~~ 112 (142)
.++..++|.+++++|+.++..++ +++-.++
T Consensus 5 ~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~Rd 35 (84)
T PF07444_consen 5 FGPSYILGIILILGGLALYFLRFFRPEVSRD 35 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHCcchhhh
Confidence 45667888888888877665433 4444443
No 114
>PTZ00046 rifin; Provisional
Probab=27.69 E-value=64 Score=28.27 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhccccccccC
Q 040176 63 FKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVSE 112 (142)
Q Consensus 63 ~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~~ 112 (142)
..+-.|+.+.++|++. .+||..=+||++|+++|.+.++
T Consensus 311 ~~~~taIiaSiiAIvV------------IVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 311 TILQTAIIASIVAIVV------------IVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhcchhHH
Confidence 3334566666666652 3556666799998887776654
No 115
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=27.26 E-value=69 Score=17.52 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=6.1
Q ss_pred cchhhhhHHHHHH
Q 040176 85 LGSLVGATIISLG 97 (142)
Q Consensus 85 l~~iiG~~lil~G 97 (142)
+..++|.+++..+
T Consensus 12 ~~~~~G~~l~~~~ 24 (34)
T TIGR01167 12 LLLLLGLLLLGLG 24 (34)
T ss_pred HHHHHHHHHHHHH
Confidence 3345666444443
No 116
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=27.15 E-value=1.8e+02 Score=19.03 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=6.2
Q ss_pred hHHHHHHHHHH
Q 040176 65 PLSIAIAVAMG 75 (142)
Q Consensus 65 ~l~PV~a~ila 75 (142)
.+.|++..+..
T Consensus 4 l~iP~l~~l~~ 14 (66)
T PF11755_consen 4 LLIPFLALLWG 14 (66)
T ss_pred HHHHHHHHHHh
Confidence 35566665555
No 117
>PRK10655 potE putrescine transporter; Provisional
Probab=27.00 E-value=3.9e+02 Score=22.69 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHh
Q 040176 65 PLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 65 ~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
++.|+++.+.....+-.........|.++++.|+.++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 426 (438)
T PRK10655 388 NFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGL 426 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 356666665554433222222235677888888766543
No 118
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=26.40 E-value=3.4e+02 Score=21.77 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHH
Q 040176 62 MFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFY 99 (142)
Q Consensus 62 ~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~ 99 (142)
+......++.++....++|-+++...+.|.+++ .|+.
T Consensus 128 ~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~-iGi~ 164 (246)
T TIGR00966 128 IVALVHDVIITVGVYSLFGIEVNLTTVAALLTI-IGYS 164 (246)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHH-HHHh
Confidence 333344455555666678999999888877655 5654
No 119
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=25.22 E-value=3.1e+02 Score=20.83 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=9.3
Q ss_pred HHHhchhHHHHHHHHHhhh
Q 040176 35 ATSKGMSHFVFVVYSYGVA 53 (142)
Q Consensus 35 ~l~~GiS~la~~l~~~~i~ 53 (142)
.++..+..+.|.++++..+
T Consensus 12 ~~Ff~~~~~vY~~~t~~~~ 30 (137)
T PF12270_consen 12 AVFFLVVAVVYGFWTKWSG 30 (137)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 3333444555666555443
No 120
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=24.40 E-value=4.1e+02 Score=22.02 Aligned_cols=13 Identities=8% Similarity=-0.194 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHH
Q 040176 64 KPLSIAIAVAMGV 76 (142)
Q Consensus 64 ~~l~PV~a~ila~ 76 (142)
....|++..+++-
T Consensus 108 ~lglpi~~~l~g~ 120 (385)
T PF03547_consen 108 FLGLPILQALFGE 120 (385)
T ss_pred hhHHHHHHHHhcc
Confidence 3345655555544
No 121
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.22 E-value=17 Score=31.28 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=35.6
Q ss_pred HHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccccccc
Q 040176 71 AVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAKEEVS 111 (142)
Q Consensus 71 a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~~~~~ 111 (142)
-+++|+.+.+|..+..-+-|-++++.|-..++|.|+.+.++
T Consensus 295 QTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 295 QTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 37788999999999999999999999999999988766555
No 122
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=23.70 E-value=38 Score=28.76 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhc
Q 040176 66 LSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWG 104 (142)
Q Consensus 66 l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~ 104 (142)
.-|+=..++++++.+.+-+|....-.++|+.|+.++.+.
T Consensus 120 cKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 120 CKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred CCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 446666899999999999999999999999999987764
No 123
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=22.47 E-value=98 Score=25.78 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=26.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHhccccccch---------------hhhhHHHHHHHHHHH
Q 040176 59 FVAMFKPLSIAIAVAMGVMFLGDRLYLGS---------------LVGATIISLGFYTVM 102 (142)
Q Consensus 59 ~~s~~~~l~PV~a~ila~l~LgE~l~l~~---------------iiG~~lil~Gv~l~~ 102 (142)
+.+.+.+..-+.++.+|. .|+.+..+ .+|..+++.|+....
T Consensus 167 ~~Gl~~f~lai~ta~~Gl---~ek~~f~~~~~~s~~~~e~~l~n~~gv~~il~g~~Vl~ 222 (245)
T KOG1619|consen 167 FLGLAIFILAIVTALTGL---LEKLTFLCFGDLSTKNPEGYLVNFLGVFIILFGVLVLT 222 (245)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHheE
Confidence 445666777777777776 44444332 778888888855443
No 124
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=22.14 E-value=1.1e+02 Score=28.10 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHHhccccccccCCCCCCcccCc-ccccccccc
Q 040176 88 LVGATIISLGFYTVMWGKAKEEVSEDPGVDRQESA-AAQKVPLLQ 131 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~ 131 (142)
+.+.+++++++|+..+.++..+.+.++.+..++.+ .+-.+||+.
T Consensus 164 v~~l~~lvi~~~~~~r~~k~~~~~~e~~~~p~~d~~~~~sspl~~ 208 (534)
T KOG3653|consen 164 VSLLAALVILAFLGYRQRKNAREEIEPVLIPLEDSGPAPSSPLLE 208 (534)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCccCcccCCCCCCCCCccccc
Confidence 34555566667777776666666666666443333 266677765
No 125
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=21.70 E-value=4.8e+02 Score=21.97 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhccccccchhhhhHHHHHHHH
Q 040176 68 IAIAVAMGVMFLGDRLYLGSLVGATIISLGFY 99 (142)
Q Consensus 68 PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~ 99 (142)
-++.++.+..+++.+++...+.|.+.+ .|+.
T Consensus 162 dv~~~l~~l~l~g~~l~~~~iaglLtl-iG~s 192 (297)
T PRK13021 162 DVIFVLAFFALTQMEFNLTVLAAVLAI-LGYS 192 (297)
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHH-HHHe
Confidence 355566666678999999888877654 5643
No 126
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=21.48 E-value=4e+02 Score=20.78 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=44.6
Q ss_pred HHHHHhchhHHHHHHHHHhhhccCchhhhhhhh-HHHHHHHHHHHHHhcc-ccccchhhhhHHHHHHHHHH
Q 040176 33 KAATSKGMSHFVFVVYSYGVAALGPVFVAMFKP-LSIAIAVAMGVMFLGD-RLYLGSLVGATIISLGFYTV 101 (142)
Q Consensus 33 ~~~l~~GiS~la~~l~~~~i~~~gps~~s~~~~-l~PV~a~ila~l~LgE-~l~l~~iiG~~lil~Gv~l~ 101 (142)
-.++|.-+..-+|.+|.+.-.... +...++.+ ++=+..+.-+.+|.++ ++....+++.++-++.+.+.
T Consensus 53 WtvLy~l~~iSa~lvW~~~~~~~~-~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~ 122 (161)
T COG3476 53 WTVLYALIGISAYLVWEKGPGQGT-SWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLT 122 (161)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 345566666667777776655433 44555555 6667777788888888 77777777776666555443
No 127
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=20.12 E-value=78 Score=23.55 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHHHHHHhccccccch---hhhhHHHHH-HHHHHHhcccccc
Q 040176 61 AMFKPLSIAIAVAMGVMFLGDRLYLGS---LVGATIISL-GFYTVMWGKAKEE 109 (142)
Q Consensus 61 s~~~~l~PV~a~ila~l~LgE~l~l~~---iiG~~lil~-Gv~l~~~~k~~~~ 109 (142)
+..+.+...++.+.+++|-..+++..+ .+..+++.. ...++.|++....
T Consensus 35 G~vT~l~VLvtii~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~gdl 87 (118)
T PF10856_consen 35 GAVTSLFVLVTIISAFVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQGDL 87 (118)
T ss_pred HHHHHHHHHHHHhheEEecCCCCCceEEehHHHHHHHHHHHHhheeehhcCCC
Confidence 445556666777778877766555444 444433332 2445667765543
Done!