Query 040176
Match_columns 142
No_of_seqs 106 out of 1104
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 9.2E-11 3.1E-15 87.2 8.0 65 41-105 40-105 (137)
2 3b5d_A Multidrug transporter E 98.8 9E-08 3.1E-12 68.0 11.2 65 41-105 40-105 (110)
3 3l1l_A Arginine/agmatine antip 72.4 24 0.00081 28.3 9.0 45 63-107 386-430 (445)
4 2zxe_G FXYD10, phospholemman-l 58.1 5.7 0.00019 26.3 2.1 20 88-107 25-44 (74)
5 2jo1_A Phospholemman; FXYD1, N 48.3 14 0.00046 24.3 2.7 18 88-105 22-39 (72)
6 2jp3_A FXYD domain-containing 46.5 14 0.00048 23.9 2.5 18 88-105 23-40 (67)
7 4dx5_A Acriflavine resistance 26.9 1.4E+02 0.005 27.4 6.9 44 62-105 902-950 (1057)
8 4djk_A Probable glutamate/gamm 25.7 2.6E+02 0.009 22.5 8.7 17 88-104 449-465 (511)
9 2l8s_A Integrin alpha-1; trans 25.3 62 0.0021 20.0 2.9 28 89-116 17-48 (54)
10 2knc_A Integrin alpha-IIB; tra 25.2 75 0.0026 19.5 3.3 15 89-103 20-34 (54)
11 3o7q_A L-fucose-proton symport 24.0 2.2E+02 0.0077 21.7 6.7 19 61-79 159-177 (438)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.16 E-value=9.2e-11 Score=87.24 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhhhccCchhhhhh-hhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMF-KPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~-~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
+.++|.+|.+++++.+++.+..+ ..+.|++++++|+++++|++++.+++|.++|++|+++.++.+
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999887 899999999999999999999999999999999999988754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.78 E-value=9e-08 Score=67.98 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhhccCchhhhhh-hhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcc
Q 040176 41 SHFVFVVYSYGVAALGPVFVAMF-KPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGK 105 (142)
Q Consensus 41 S~la~~l~~~~i~~~gps~~s~~-~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k 105 (142)
..++|.+|.+++++.+.+.+... ..+.|++++++++++++|++++.+++|.++|+.|+++.++.+
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 67788999999999999999666 899999999999999999999999999999999999987654
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=72.37 E-value=24 Score=28.34 Aligned_cols=45 Identities=4% Similarity=-0.208 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHhcccc
Q 040176 63 FKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 63 ~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~Gv~l~~~~k~~ 107 (142)
..+..++++.+...+.+-..-....+.|.++++.|+.+..+.+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455667766665544432221223466788888887776554433
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=58.10 E-value=5.7 Score=26.29 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHhcccc
Q 040176 88 LVGATIISLGFYTVMWGKAK 107 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k~~ 107 (142)
++++++.+.|+++..+.|=+
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 66778888899888776633
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=48.34 E-value=14 Score=24.31 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHhcc
Q 040176 88 LVGATIISLGFYTVMWGK 105 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k 105 (142)
++++++.+.|+++..+.|
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 566677778887766544
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=46.48 E-value=14 Score=23.93 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHhcc
Q 040176 88 LVGATIISLGFYTVMWGK 105 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~k 105 (142)
++++++.+.|+++..+.|
T Consensus 23 ifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 667778888888877655
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=26.90 E-value=1.4e+02 Score=27.42 Aligned_cols=44 Identities=18% Similarity=0.038 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHhccccccchhhhhHHHHH-----HHHHHHhcc
Q 040176 62 MFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISL-----GFYTVMWGK 105 (142)
Q Consensus 62 ~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~-----Gv~l~~~~k 105 (142)
+......++..+.+..+++-++++..++|.++++. +++++.+.+
T Consensus 902 l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~ 950 (1057)
T 4dx5_A 902 MLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAK 950 (1057)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEEehHHh
Confidence 33344445566677778899999999999876543 355565554
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=25.73 E-value=2.6e+02 Score=22.53 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHhc
Q 040176 88 LVGATIISLGFYTVMWG 104 (142)
Q Consensus 88 iiG~~lil~Gv~l~~~~ 104 (142)
+++.++++.+++...+.
T Consensus 449 ~~~~~~~~~~i~~~~~~ 465 (511)
T 4djk_A 449 LVVSFLVVLALPFILYA 465 (511)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666655543
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.28 E-value=62 Score=19.95 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHh----ccccccccCCCCC
Q 040176 89 VGATIISLGFYTVMW----GKAKEEVSEDPGV 116 (142)
Q Consensus 89 iG~~lil~Gv~l~~~----~k~~~~~~~~~~~ 116 (142)
+|++++++=+.+..| .|++.++..++-|
T Consensus 17 l~GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~ 48 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIGFFKRPLKKKMEKLE 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCSCCCCC--
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCcchhhHHh
Confidence 344444443333333 3444443444443
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.23 E-value=75 Score=19.49 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHh
Q 040176 89 VGATIISLGFYTVMW 103 (142)
Q Consensus 89 iG~~lil~Gv~l~~~ 103 (142)
+|++++++-+.+..|
T Consensus 20 l~GLllL~li~~~Lw 34 (54)
T 2knc_A 20 LGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555554444444
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=24.00 E-value=2.2e+02 Score=21.73 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHHHHHh
Q 040176 61 AMFKPLSIAIAVAMGVMFL 79 (142)
Q Consensus 61 s~~~~l~PV~a~ila~l~L 79 (142)
....++-.+++.+++..+.
T Consensus 159 ~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 159 QTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444
Done!