Query 040176
Match_columns 142
No_of_seqs 106 out of 1104
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 09:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040176.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040176hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 35.9 53 0.0039 22.9 6.7 28 69-96 95-122 (222)
2 d1iwga7 f.35.1.1 (A:7-37,A:331 17.3 1.4E+02 0.01 20.0 7.3 40 57-96 65-104 (199)
3 d2axtk1 f.23.36.1 (K:10-46) Ph 13.8 70 0.0051 16.8 2.5 16 63-78 15-30 (37)
4 d2axte1 f.23.38.1 (E:3-84) Cyt 11.9 1.1E+02 0.0077 18.8 3.3 23 111-135 47-69 (82)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 8.5 3E+02 0.022 18.8 9.2 42 64-105 161-205 (447)
6 d1pv7a_ f.38.1.2 (A:) Lactose 4.7 4.5E+02 0.033 17.0 4.5 13 65-77 148-160 (417)
7 d1jb0i_ f.23.17.1 (I:) Subunit 4.4 2.3E+02 0.017 14.7 1.9 15 58-72 4-20 (38)
8 d1ohua_ f.1.4.1 (A:) Apoptosis 4.2 1.6E+02 0.012 19.7 1.5 26 77-103 90-115 (172)
9 d1ppjg_ f.23.13.1 (G:) Ubiquin 4.0 2.6E+02 0.019 16.5 2.2 19 35-53 45-64 (75)
10 d3cx5h1 f.23.13.1 (H:2-94) Ubi 3.5 2.9E+02 0.021 17.0 2.2 13 41-53 62-74 (93)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=35.92 E-value=53 Score=22.87 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccccccchhhhhHHHHH
Q 040176 69 AIAVAMGVMFLGDRLYLGSLVGATIISL 96 (142)
Q Consensus 69 V~a~ila~l~LgE~l~l~~iiG~~lil~ 96 (142)
++.++.+..+++.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 4556677778999999999888876544
No 2
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.26 E-value=1.4e+02 Score=20.01 Aligned_cols=40 Identities=5% Similarity=0.036 Sum_probs=24.7
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhccccccchhhhhHHHHH
Q 040176 57 PVFVAMFKPLSIAIAVAMGVMFLGDRLYLGSLVGATIISL 96 (142)
Q Consensus 57 ps~~s~~~~l~PV~a~ila~l~LgE~l~l~~iiG~~lil~ 96 (142)
+...........++..+....+++.+++.....+.++++.
T Consensus 65 ~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 65 ATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 3333344444445555556677888998888777665554
No 3
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.75 E-value=70 Score=16.80 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHH
Q 040176 63 FKPLSIAIAVAMGVMF 78 (142)
Q Consensus 63 ~~~l~PV~a~ila~l~ 78 (142)
..|++|++-.+++++.
T Consensus 15 vlPiIPv~f~lLafVW 30 (37)
T d2axtk1 15 VLPVIPVLFLALAFVW 30 (37)
T ss_dssp HGGGHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4678899888888764
No 4
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.92 E-value=1.1e+02 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=13.7
Q ss_pred cCCCCCCcccCcccccccccccccc
Q 040176 111 SEDPGVDRQESAAAQKVPLLQSRKN 135 (142)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (142)
.+++-|-- +..+|+.||..++=+
T Consensus 47 tPrPneYf--t~~rq~~pli~~Rf~ 69 (82)
T d2axte1 47 TPRPDSYY--AQEQRSIPLVTDRFE 69 (82)
T ss_dssp CCCTTCSS--CSSCCSCCCCCCSSS
T ss_pred CCCccccc--ccccccCcccccccC
Confidence 34444444 333788998877644
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.54 E-value=3e+02 Score=18.80 Aligned_cols=42 Identities=5% Similarity=-0.063 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHhccccccch---hhhhHHHHHHHHHHHhcc
Q 040176 64 KPLSIAIAVAMGVMFLGDRLYLGS---LVGATIISLGFYTVMWGK 105 (142)
Q Consensus 64 ~~l~PV~a~ila~l~LgE~l~l~~---iiG~~lil~Gv~l~~~~k 105 (142)
.++-.+++.+++.......-++.. +.+.+.++.+++...+.+
T Consensus 161 ~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 161 HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred cchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 334444444444443333333322 334444444454444433
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.72 E-value=4.5e+02 Score=17.04 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 040176 65 PLSIAIAVAMGVM 77 (142)
Q Consensus 65 ~l~PV~a~ila~l 77 (142)
....+++..++.+
T Consensus 148 ~~~~~~~~~~~~~ 160 (417)
T d1pv7a_ 148 CVGWALGASIVGI 160 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 3333444444433
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.38 E-value=2.3e+02 Score=14.67 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=7.8
Q ss_pred hhhhhhhh--HHHHHHH
Q 040176 58 VFVAMFKP--LSIAIAV 72 (142)
Q Consensus 58 s~~s~~~~--l~PV~a~ 72 (142)
++++.|.| ++|+++-
T Consensus 4 ~yAAsyLPwI~iPvv~w 20 (38)
T d1jb0i_ 4 SYAASFLPWIFIPVVCW 20 (38)
T ss_dssp SSTTTTHHHHHHHHHHT
T ss_pred hhHHHhcchhHHHHHHH
Confidence 34555554 5566553
No 8
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=4.20 E-value=1.6e+02 Score=19.74 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=14.0
Q ss_pred HHhccccccchhhhhHHHHHHHHHHHh
Q 040176 77 MFLGDRLYLGSLVGATIISLGFYTVMW 103 (142)
Q Consensus 77 l~LgE~l~l~~iiG~~lil~Gv~l~~~ 103 (142)
-++.+.+||+.++..+ .++|.+....
T Consensus 90 elf~~ginWGRIVal~-aF~g~la~~~ 115 (172)
T d1ohua_ 90 QTDQSPMSYGRLIGLI-SFGGFVAAKM 115 (172)
T ss_dssp -----CCCHHHHHHHH-HHHHHHHHHH
T ss_pred hhccCCCCHHHHHHHH-HHHHHHHHHH
Confidence 3445568999988764 5566654443
No 9
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.96 E-value=2.6e+02 Score=16.48 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=12.9
Q ss_pred HHHhch-hHHHHHHHHHhhh
Q 040176 35 ATSKGM-SHFVFVVYSYGVA 53 (142)
Q Consensus 35 ~l~~Gi-S~la~~l~~~~i~ 53 (142)
++|... -.++|.+|.|+.+
T Consensus 45 ~l~v~PPfi~~Y~iy~W~~~ 64 (75)
T d1ppjg_ 45 ILRVAPPFVAFYLVYTWGTQ 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcCHHHHHHHHHHHHHH
Confidence 344444 5667899999875
No 10
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.52 E-value=2.9e+02 Score=17.00 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhhh
Q 040176 41 SHFVFVVYSYGVA 53 (142)
Q Consensus 41 S~la~~l~~~~i~ 53 (142)
-.++|.+|.|+.+
T Consensus 62 fi~~Y~iy~Wa~~ 74 (93)
T d3cx5h1 62 AGIYWYWWKNGNE 74 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567888988876
Done!