BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040184
(699 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 192/678 (28%), Positives = 292/678 (43%), Gaps = 95/678 (14%)
Query: 2 TSLRVLSLDLNQLTGNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
SL L L N L+G +++ + L + ++ L +S N P + + L+V
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 61 CNEIFVESESSHSMTPKF-QLESVALSGSGIH---------------------ATFPKFL 98
N I + ++ +L+ +A+SG+ I +T FL
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 99 YNQHDLEYVDFSDSNLKGEFXXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYV 158
+ L+++D S + L G+F GP +P P L L +
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GP--IPPLPLKSLQYLSL 273
Query: 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG--------------------- 197
++N F G IP + L L+LS N F G++P G
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 198 ----DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSK--KNYLRKL 251
M L+ LDLS N+ +GE+PE L +L L LS N+ G + +N L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311
L+L N FTG+IP +LSNCS L L++S N L G IP+ LG+LS L D+ + N L+G
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 312 PIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSI 371
IP E + L+ L L N+ L G + G N +++
Sbjct: 454 EIPQELMYVKTLETLILDFND-----------------------LTGEIPSG-LSNCTNL 489
Query: 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG 431
+ LS N +G IP WI RL L L L+NN+ G +P +L + L +DL+ N G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 432 QIPGCL--DNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYK 489
IP + + + N V N ++ + +E + +S
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 490 GKPLNKMYG---------------VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534
+++YG +D+S N L+G IP +I + + LNL HN+++G I
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKE 594
P +L + LD+S N L+G+IP + L L +++NNLSG IPE QF TF
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPP 728
Query: 595 DSYEGNPLLCGKPLPDCD 612
+ NP LCG PLP CD
Sbjct: 729 AKFLNNPGLCGYPLPRCD 746
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 192/678 (28%), Positives = 292/678 (43%), Gaps = 95/678 (14%)
Query: 2 TSLRVLSLDLNQLTGNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
SL L L N L+G +++ + L + ++ L +S N P + + L+V
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 61 CNEIFVESESSHSMTPKF-QLESVALSGSGIH---------------------ATFPKFL 98
N I + ++ +L+ +A+SG+ I +T FL
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 99 YNQHDLEYVDFSDSNLKGEFXXXXXXXXXXXXXXXXXXXXXSGPFRMPIQPHWHLDTLYV 158
+ L+++D S + L G+F GP +P P L L +
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GP--IPPLPLKSLQYLSL 276
Query: 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG--------------------- 197
++N F G IP + L L+LS N F G++P G
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 198 ----DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSK--KNYLRKL 251
M L+ LDLS N+ +GE+PE L +L L LS N+ G + +N L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311
L+L N FTG+IP +LSNCS L L++S N L G IP+ LG+LS L D+ + N L+G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 312 PIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSI 371
IP E + L+ L L N+ L G + G N +++
Sbjct: 457 EIPQELMYVKTLETLILDFND-----------------------LTGEIPSG-LSNCTNL 492
Query: 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG 431
+ LS N +G IP WI RL L L L+NN+ G +P +L + L +DL+ N G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 432 QIPGCL--DNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYK 489
IP + + + N V N ++ + +E + +S
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 490 GKPLNKMYG---------------VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534
+++YG +D+S N L+G IP +I + + LNL HN+++G I
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKE 594
P +L + LD+S N L+G+IP + L L +++NNLSG IPE QF TF
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPP 731
Query: 595 DSYEGNPLLCGKPLPDCD 612
+ NP LCG PLP CD
Sbjct: 732 AKFLNNPGLCGYPLPRCD 749
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 107/259 (41%), Gaps = 59/259 (22%)
Query: 379 NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLD 438
N+ G IP I +LT L YL + + N+ G +P L ++K L +D S N + G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 439 NTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGK--PLNKM 496
S++ I F IS + +K+
Sbjct: 146 ------------------------------SSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 497 Y-GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFS---------------- 539
+ + +S N+LTG+IPP + L + ++LS N L G V F
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 540 -NLNQV------ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTF 592
+L +V LD+ N + G +P L +L L +V+ NNL G+IP+ F
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293
Query: 593 KEDSYEGNPLLCGKPLPDC 611
+Y N LCG PLP C
Sbjct: 294 DVSAYANNKCLCGSPLPAC 312
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 504 NKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV 563
N L G IPP I+KLT++ L ++H N++G IP S + + +LD SYN L+G +PP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 564 ELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP---DCDVAAVPEAS 620
L L + N +SG IP+ F+ L GK P + ++A V +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 621 NEEDGNSLIDMGS 633
N +G++ + GS
Sbjct: 207 NMLEGDASVLFGS 219
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 117/290 (40%), Gaps = 59/290 (20%)
Query: 152 HLDTLYVSK-NFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHN 210
+L+ LY+ N G IP I +L YL ++ + +G+IP + + +L LD S+N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 211 QLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLS 270
L+G +P ++ L LV + D N +G IP S
Sbjct: 136 ALSGTLPPSIS-------------------------SLPNLVGITFDGNRISGAIPDS-- 168
Query: 271 NCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS-NHLQGPIPLEFCQLNYLQILDLS 329
G+ S L+ M S N L G IP F LN L +DLS
Sbjct: 169 ----------------------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 330 ENNIXXXXXXXXXXXXITQ-VHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYW 388
N + TQ +HL+KN L G ++ LDL N G +P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 389 IERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIF--GQIPGC 436
+ +L +L L ++ NNL GE+P Q L++ + +NN +P C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 69/279 (24%)
Query: 265 IPKSLSNCSHLEGLYMSD-NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
IP SL+N +L LY+ NNL G IP + L+ L+ + + ++ G IP Q+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--- 124
Query: 324 QILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG 383
++VTLD SYN+ SG
Sbjct: 125 ---------------------------------------------KTLVTLDFSYNALSG 139
Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQL-RLIDLSNNNIFGQIPGCLDNTSL 442
+P I L L + N + G +P +L + +S N + G+IP N +L
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 443 ------HNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM 496
N + D S++ + N + + A + S+ F ++ S K LN
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLA-------KNSLAFDLGKVGLS---KNLN-- 247
Query: 497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP 535
G+DL N++ G +P +++L + +LN+S NNL G IP
Sbjct: 248 -GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 174/441 (39%), Gaps = 61/441 (13%)
Query: 205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL---HLDANYF 261
+DLS N + E+ E +L+FL + + + L + N R L SL LD N F
Sbjct: 35 VDLSLNSI-AELNETSFSRLQDLQFLKVEQQT--PGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 262 TGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN----LSSLYDIMMASNHLQGPIPLEF 317
+ + ++LE L ++ NL G + + GN L+SL +++ N+++ P F
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 318 -CQLNYLQILDLSENNIXXXXXXXX---XXXXITQVHLSKNMLY-------GPLRYGTFF 366
+ +LDL+ N + T + LS L G + G F
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
+SI TLDLS N F E + + +A ++ + LSN
Sbjct: 210 KNTSITTLDLSGNGFK-------ESMAKRFFDAIAGTKIQSLI--------------LSN 248
Query: 427 NNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486
+ G G H N + D N + ++G T + +S +F + F
Sbjct: 249 SYNMGSSFG-------HTNFKDPD------NFTFKGLEASGVKTCDLSKSKIFALLKSVF 295
Query: 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVES 546
S+ + + L+ N++ LT + LNLS N L + F NL+++E
Sbjct: 296 SH----FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351
Query: 547 LDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 606
LD+SYN++ + L L ++ N L + T+ ++ NP C
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411
Query: 607 PLPDCDVAAVPEASNEEDGNS 627
P D + + S +E G++
Sbjct: 412 PRIDYLSRWLNKNSQKEQGSA 432
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 224 CFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN 283
C L+ +V N L L K R + L+LD N FT +PK LSN HL + +S+N
Sbjct: 8 CTCLDTVVRCSNKGLKVL--PKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNN 64
Query: 284 NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNI 333
+ N++ L ++++ N L+ P F L L++L L N+I
Sbjct: 65 RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 510 IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVE-LNAL 568
+P ++S + ++LS+N ++ + +FSN+ Q+ +L +SYN L IPP+ + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 569 AFFSVAHNNLSGKIPEWT-AQFTTFKEDSYEGNPLLCGKPLPDCDV 613
S+ N++S +PE + + NPL C DC++
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC-----DCNM 144
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
+DLS N+++ S +T++ L LS+N L + P TF L + L + N+++
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 559 PPQLVELNALAFFSVAHNNL 578
+L+AL+ ++ N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 100/243 (41%), Gaps = 17/243 (6%)
Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRK 250
++P I +L LDL +N ++ E+ + +L LVL N + + LRK
Sbjct: 47 AVPKEISPDTTL--LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
L L++ N+ EIP +L S L L + DN + L ++ I M N L+
Sbjct: 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 311 G----PIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFF 366
P + +LNYL+I + I + ++HL N + +
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET-----LNELHLDHNKIQA-IELEDLL 214
Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSN 426
S + L L +N + L LR L L NN L VP L LK L+++ L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHT 273
Query: 427 NNI 429
NNI
Sbjct: 274 NNI 276
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 149 PHWHLDTLYVSKNFFQGNIPLEIGVYFPR-LVYLNLSRNDFNGSIPSSIGDMNSLEALDL 207
P L LY+SKN +EI P LV L + N + ++ +++
Sbjct: 100 PLRKLQKLYISKNHL-----VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
Query: 208 SHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG-------------------QLFSKKNYL 248
N L E A L +L +SE L G Q ++ L
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL 214
Query: 249 R--KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS 306
R KL L L N SLS L L++ DNN +PA L +L L + + +
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL-DNNKLSRVPAGLPDLKLLQVVYLHT 273
Query: 307 NHLQGPIPLEFCQLNY 322
N++ +FC + +
Sbjct: 274 NNITKVGVNDFCPVGF 289
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
D S KLT ++P + T I LNL+HN L + F+ +Q+ SLD+ +N + K+
Sbjct: 14 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 69
Query: 559 PPQLVE-LNALAFFSVAHNNLSGKIPEWTAQFTT 591
P+L + L L ++ HN LS ++ + T F T
Sbjct: 70 EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 102
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 39/265 (14%)
Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
IT ++L+ N L L F S + +LD+ +N+ S P ++L L+ L L +N L
Sbjct: 32 ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 406 E--GEVPIQLC----------------------RLKQLRLIDLSNNNIFGQIPGCLDNTS 441
+ C + K L +DLS+N + G
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 150
Query: 442 LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS---FSYKGKPLNKMYG 498
++ + A + +S+++K E KE S F G +++G
Sbjct: 151 NLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQIKEFSPGCFHAIG----RLFG 204
Query: 499 VDLSCNKLTGEIPPQIS---KLTRIRALNLSHNNLTGVIPVTFSNLN--QVESLDISYNN 553
+ L+ +L + ++ T IR L+LS++ L+ TF L + LD+SYNN
Sbjct: 205 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 264
Query: 554 LNGKIPPQLVELNALAFFSVAHNNL 578
LN L L +F + +NN+
Sbjct: 265 LNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
++ +D+ N ++ P KL ++ LNL HN L+ + TF+ + L + N++
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Query: 555 NGKIPPQLVELNALAFFSVAHNNLSG 580
V+ L ++HN LS
Sbjct: 115 QKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
D S KLT ++P + T I LNL+HN L + F+ +Q+ SLD+ +N + K+
Sbjct: 19 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 74
Query: 559 PPQLVE-LNALAFFSVAHNNLSGKIPEWTAQFTT 591
P+L + L L ++ HN LS ++ + T F T
Sbjct: 75 EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 107
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 39/265 (14%)
Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
IT ++L+ N L L F S + +LD+ +N+ S P ++L L+ L L +N L
Sbjct: 37 ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 406 E--GEVPIQLC----------------------RLKQLRLIDLSNNNIFGQIPGCLDNTS 441
+ C + K L +DLS+N + G
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 155
Query: 442 LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS---FSYKGKPLNKMYG 498
++ + A + +S+++K E KE S F G +++G
Sbjct: 156 NLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQIKEFSPGCFHAIG----RLFG 209
Query: 499 VDLSCNKLTGEIPPQIS---KLTRIRALNLSHNNLTGVIPVTFSNLN--QVESLDISYNN 553
+ L+ +L + ++ T IR L+LS++ L+ TF L + LD+SYNN
Sbjct: 210 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 269
Query: 554 LNGKIPPQLVELNALAFFSVAHNNL 578
LN L L +F + +NN+
Sbjct: 270 LNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
++ +D+ N ++ P KL ++ LNL HN L+ + TF+ + L + N++
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 555 NGKIPPQLVELNALAFFSVAHNNLSG 580
V+ L ++HN LS
Sbjct: 120 QKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
D S KLT ++P + T I LNL+HN L + F+ +Q+ SLD+ +N + K+
Sbjct: 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKL 64
Query: 559 PPQLVE-LNALAFFSVAHNNLSGKIPEWTAQFTT 591
P+L + L L ++ HN LS ++ + T F T
Sbjct: 65 EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 39/265 (14%)
Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
IT ++L+ N L L F S + +LD+ +N+ S P ++L L+ L L +N L
Sbjct: 27 ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 406 E--GEVPIQLC----------------------RLKQLRLIDLSNNNIFGQIPGCLDNTS 441
+ C + K L +DLS+N + G
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145
Query: 442 LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS---FSYKGKPLNKMYG 498
++ + A ++ +S+++K E KE S F G +++G
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFA--NSSLKKLELSSNQIKEFSPGCFHAIG----RLFG 199
Query: 499 VDLSCNKLTGEIPPQIS---KLTRIRALNLSHNNLTGVIPVTFSNLN--QVESLDISYNN 553
+ L+ +L + ++ T IR L+LS++ L+ TF L + LD+SYNN
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 554 LNGKIPPQLVELNALAFFSVAHNNL 578
LN L L +F + +NN+
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554
++ +D+ N ++ P KL ++ LNL HN L+ + TF+ + L + N++
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 555 NGKIPPQLVELNALAFFSVAHNNLSG 580
V+ L ++HN LS
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 128/307 (41%), Gaps = 43/307 (14%)
Query: 265 IPKSLSNCSHLEGLYMSDN------------NLYGNIPAW-LGNLSSLYDIMMASNHLQG 311
+ +++CSHL+ + D+ N +PA S L + + N +
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 312 PIPLEFCQ-LNYLQILDLSENNIXXXXXXXXX-XXXITQVHLSKNMLYGPLRYGTFFNRS 369
P E CQ L L++L+L N + +T++HL N + ++ F +
Sbjct: 64 LEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK 121
Query: 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEG--EVPIQLCRLKQLRLIDLSNN 427
+++TLDLS+N S +L L+ L+L+NN ++ + + L+ ++LS+N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 428 NIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFS 487
I PGC H G L F +NV+ G S EK + T + S
Sbjct: 182 QIKEFSPGCF-----HAIG----RLFGLFLNNVQ----LGPSLTEKLCLELANTSIRNLS 228
Query: 488 YKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL 547
L+ S G K T + L+LS+NNL V +F+ L Q+E
Sbjct: 229 LSNSQLSTT-----SNTTFLG------LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277
Query: 548 DISYNNL 554
+ YNN+
Sbjct: 278 FLEYNNI 284
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 30/252 (11%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
FP L L L+ N + P + ++ +L L L N+L IP + NL L +SE
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N ++ L L L SL + N ++ S + LE L + NL +IP
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPT--- 169
Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKN 354
A +HL G I L LN I D S + ++ N
Sbjct: 170 ---------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-MTPN 219
Query: 355 MLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER-LTYLRYLILANN---NLEGEVP 410
LYG ++ +L +++ + + +PY R L YLR+L L+ N +EG +
Sbjct: 220 CLYG----------LNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 411 IQLCRLKQLRLI 422
+L RL++++L+
Sbjct: 269 HELLRLQEIQLV 280
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
L+ + +D+S NK+ + L +++L + N+L + FS LN +E L +
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 553 NLNGKIPPQLVELNALAFFSVAHNNLSG 580
NL L L+ L + H N++
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINA 190
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558
D S KLT IP + + I LNL+HN L + P F+ +Q+ LD +N++ K+
Sbjct: 9 ADCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKL 64
Query: 559 PPQLVE-LNALAFFSVAHNNLSGKIPEWTAQFTT 591
P+L + L L ++ HN LS +I + T F T
Sbjct: 65 EPELCQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 107/273 (39%), Gaps = 47/273 (17%)
Query: 316 EFCQ-LNYLQILDLSENNIXXXXXXXXX-XXXITQVHLSKNMLYGPLRYGTFFNRSSIVT 373
E CQ L L++L+L N + +T++ L N ++ ++ F N+ +++
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIK 125
Query: 374 LDLSYNSFS------GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNN 427
LDLS+N S G ++ L + ILA L E ++ LR +DLS+N
Sbjct: 126 LDLSHNGLSSTKLGTGVQLENLQELLLAKNKILA---LRSE-ELEFLGNSSLRKLDLSSN 181
Query: 428 NIFGQIPGCLDNTS-----LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTK 482
+ PGC L NN + L + +T S + + T
Sbjct: 182 PLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQ---LLATS 238
Query: 483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN 542
E +FS G+ K T + L+LS+NNL V +FS L
Sbjct: 239 ESTFS----------GL----------------KWTNLTQLDLSYNNLHDVGNGSFSYLP 272
Query: 543 QVESLDISYNNLNGKIPPQLVELNALAFFSVAH 575
+ L + YNN+ P L+ L + S+
Sbjct: 273 SLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 124/317 (39%), Gaps = 57/317 (17%)
Query: 269 LSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDL 328
+++CSHL+ ++ D+ +P S++ + + N L+ P F + + L ILD
Sbjct: 8 VADCSHLKLTHIPDD-----LP------SNITVLNLTHNQLRRLPPTNFTRYSQLAILDA 56
Query: 329 SENNIXX-------------------------XXXXXXXXXXITQVHLSKNMLYGPLRYG 363
N+I +T++ L N ++ ++
Sbjct: 57 GFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK-IKSN 115
Query: 364 TFFNRSSIVTLDLSYNSFS------GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLK 417
F N+ +++ LDLS+N S G ++ L + ILA L E ++
Sbjct: 116 PFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILA---LRSE-ELEFLGNS 171
Query: 418 QLRLIDLSNNNIFGQIPGCLDNTS-----LHNNGDNDDSLVPAFNHNVRSTYSAGSSTME 472
LR +DLS+N + PGC L NN + L + +T S
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 473 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG 532
+ + T E +FS G + +DLS N L S L +R L+L +NN+
Sbjct: 232 NQ---LLATSESTFS--GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 533 VIPVTFSNLNQVESLDI 549
+ P +F L+ + L +
Sbjct: 287 LSPRSFYGLSNLRYLSL 303
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 106/274 (38%), Gaps = 45/274 (16%)
Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
IT ++L+ N L L F S + LD +NS S P + L L+ L L +N L
Sbjct: 27 ITVLNLTHNQLRR-LPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVP-AFNHNVRSTY 464
L +DL +N+I +I N N +L+ +HN S+
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIH-KIKS--------NPFKNQKNLIKLDLSHNGLSST 136
Query: 465 SAGSSTMEKEESIMFTTKEISFSYKGKPL-----NKMYGVDLSCNKLT------------ 507
G+ + + K + + + L + + +DLS N L
Sbjct: 137 KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGK 196
Query: 508 --------GEIPPQISKL-------TRIRALNLSHNNLTGVIPVTFSNLN--QVESLDIS 550
++ P +++ T I+ L+L++N L TFS L + LD+S
Sbjct: 197 LFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLS 256
Query: 551 YNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584
YNNL+ L +L + S+ +NN+ P
Sbjct: 257 YNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428
+++ LDLSYN+ L LRYL L NN++ P L LR + L
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR-- 305
Query: 429 IFGQIPGCLDNTSLHNNGDNDD------SLVPAFNHNVRSTYSAGSSTMEKEESIMFTTK 482
F + + SL ++ + DD + N + + S S+T S+ + +
Sbjct: 306 AFTK-----QSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL 360
Query: 483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN 542
+F+ S LT E ++ + + LNL+ N+++ + TFS L
Sbjct: 361 SKTFT--------------SLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLG 405
Query: 543 QVESLDISYNNLNGKIPPQ 561
Q+ LD+ N + K+ Q
Sbjct: 406 QLRILDLGLNEIEQKLSGQ 424
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQF----QIPFSLEPFFNNSKLKV 56
+ LR+L L LN++ +S L +I ++LSYN++ F+L P L+
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Query: 57 FSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNL 114
+ + +I S P L + LS + I L +LE +DF +NL
Sbjct: 464 VALKNVDI-----SPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 10/227 (4%)
Query: 205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGE 264
LDL +N++T EI + + NL L+L N + L KL L+L N E
Sbjct: 57 LDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 265 IPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ--GPIPLEFCQLNY 322
+P+ + L+ L + +N + + L+ + + + +N L+ G F +
Sbjct: 115 LPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 323 LQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS 382
L + +++ NI +T++HL N + + + +++ L LS+NS S
Sbjct: 173 LSYIRIADTNITTIPQGLPPS--LTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSIS 229
Query: 383 GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
+ +LR L L NN L +VP L K ++++ L NNNI
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%)
Query: 149 PHWHLDTLYVSKNFFQGNIPLEIGVYFPR-LVYLNLSRNDFNGSIPSSIGDMNSLEALDL 207
P L+ LY+SKN + E+ P+ L L + N+ S +N + ++L
Sbjct: 98 PLVKLERLYLSKNQLK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 208 SHNQLTGEIPEHLAMSCFN-LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIP 266
N L E+ A L ++ +++ ++ + L LHLD N T
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDA 209
Query: 267 KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326
SL ++L L +S N++ L N L ++ + +N L +P Y+Q++
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268
Query: 327 DLSENNI 333
L NNI
Sbjct: 269 YLHNNNI 275
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 10/227 (4%)
Query: 205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGE 264
LDL +N++T EI + + NL L+L N + L KL L+L N E
Sbjct: 57 LDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 265 IPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ--GPIPLEFCQLNY 322
+P+ + L+ L + +N + + L+ + + + +N L+ G F +
Sbjct: 115 LPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 323 LQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS 382
L + +++ NI +T++HL N + + + +++ L LS+NS S
Sbjct: 173 LSYIRIADTNITTIPQGLPPS--LTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSIS 229
Query: 383 GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
+ +LR L L NN L +VP L K ++++ L NNNI
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%)
Query: 149 PHWHLDTLYVSKNFFQGNIPLEIGVYFPR-LVYLNLSRNDFNGSIPSSIGDMNSLEALDL 207
P L+ LY+SKN + E+ P+ L L + N+ S +N + ++L
Sbjct: 98 PLVKLERLYLSKNQLK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 208 SHNQLTGEIPEHLAMSCFN-LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIP 266
N L E+ A L ++ +++ ++ + L LHLD N T
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDA 209
Query: 267 KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326
SL ++L L +S N++ L N L ++ + +N L +P Y+Q++
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268
Query: 327 DLSENNI 333
L NNI
Sbjct: 269 YLHNNNI 275
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 180 YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFN-LEFLVLSENSLL 238
+LN ++N F S+ + L+ L L N L L + LE L +S NSL
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 239 GQLFSKK-NYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297
+ + + ++ L+L +N TG + + L + L+ NN +IP + +L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHLQ 473
Query: 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
+L ++ +ASN L+ F +L LQ + L +N
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 11/151 (7%)
Query: 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG--SIPSSIGDMNSLEALDLSHNQLTGEI 216
+ + FQG L+ RL L L RN + +M+SLE LD+S N L
Sbjct: 366 TDSVFQGCSTLK------RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 217 PEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLE 276
+ ++ L LS N L G +F K++ LH N IPK +++ L+
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHLQALQ 476
Query: 277 GLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307
L ++ N L L+SL I + N
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 467 GSSTMEKEESIMFTTKEISFSYK----GKPLNKMYGVDLSCNKLTGEIPPQISKLTR-IR 521
G ST+++ ++++ + +K K ++ + +D+S N L + I
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431
Query: 522 ALNLSHNNLTGVIPVTFSNLN-QVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580
LNLS N LTG + F L +V+ LD+ +NN IP + L AL +VA N L
Sbjct: 432 VLNLSSNMLTGSV---FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Query: 581 KIPEWT-AQFTTFKEDSYEGNPLLCGKP 607
+P+ + T+ + NP C P
Sbjct: 488 -VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 472 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT 531
E E + ++ + ++ K P + + LS N ++ P IS L+ +R L LSHN +
Sbjct: 31 ELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89
Query: 532 GVIPVTFSNLNQVESLDISYNNL 554
+ F +E LD+S+N L
Sbjct: 90 SLDFHVFLFNQDLEYLDVSHNRL 112
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 175 FPRLVYLNLSRNDF-----NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
+ RL LNL R + +G++P L LDLSHNQL +P L + L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LP-LLGQTLPALTV 104
Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
L +S N L L +L L+L N P L+ LE L +++NNL +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163
Query: 290 PAWLGN-LSSLYDIMMASNHL 309
PA L N L +L +++ N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 175 FPRLVYLNLSRNDF-----NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
+ RL LNL R + +G++P L LDLSHNQL +P L + L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LP-LLGQTLPALTV 104
Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
L +S N L L +L L+L N P L+ LE L +++NNL +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163
Query: 290 PAWLGN-LSSLYDIMMASNHL 309
PA L N L +L +++ N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 175 FPRLVYLNLSRNDF-----NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
+ RL LNL R + +G++P L LDLSHNQL +P L + L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LP-LLGQTLPALTV 104
Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
L +S N L L +L L+L N P L+ LE L +++NNL +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163
Query: 290 PAWLGN-LSSLYDIMMASNHL 309
PA L N L +L +++ N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+++L+VL LDLNQ+T NI SPL LT+++ L + NQ L P N SKL +
Sbjct: 134 LSNLQVLYLDLNQIT-NI--SPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTLRAD 187
Query: 61 CNEI 64
N+I
Sbjct: 188 DNKI 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
+ RL LNL R + G + L LDLSHNQL +P L + L L +S
Sbjct: 55 YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSF 110
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L +L L+L N P L+ LE L +++NNL +PA L
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 169
Query: 295 N-LSSLYDIMMASNHL 309
N L +L +++ N L
Sbjct: 170 NGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
+ RL LNL R + G + L LDLSHNQL +P L + L L +S
Sbjct: 54 YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSF 109
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L +L L+L N P L+ LE L +++NNL +PA L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168
Query: 295 N-LSSLYDIMMASNHL 309
N L +L +++ N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
L + +DLS +L P + L+ ++ LN+SHNN + + LN ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Query: 553 NLNGKIPPQLVEL-NALAFFSVAHNNLS 579
++ +L ++LAF ++ N+ +
Sbjct: 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 6/159 (3%)
Query: 178 LVYLNLSRNDFNGSIP--SSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
L YL+LS FNG I S+ + LE LD H+ L + +S NL +L +S
Sbjct: 399 LKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455
Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGE-IPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L L + N F +P + +L L +S L P
Sbjct: 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515
Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNI 333
+LSSL + M+ N+ + LN LQ+LD S N+I
Sbjct: 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 363 GTFFNRSSIVTLDLSYNSFS-GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRL 421
G F SS+ L ++ NSF ++P L L +L L+ LE P L L++
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 422 IDLSNNNIFG 431
+++S+NN F
Sbjct: 523 LNMSHNNFFS 532
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 29/187 (15%)
Query: 175 FPRLVYLNLSRNDF---NGSIPSSIGDMNSLEALDLSHNQLTGE-IPEHLAMSCFNLEFL 230
FP L +L R F G S D+ SLE LDLS N L+ + +L++L
Sbjct: 343 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402
Query: 231 VLSENSL---------LGQL---------------FSKKNYLRKLVSLHLDANYFTGEIP 266
LS N + L QL FS LR L+ L + +
Sbjct: 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462
Query: 267 KSLSNCSHLEGLYMSDNNLYGN-IPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQI 325
+ S LE L M+ N+ N +P L +L + ++ L+ P F L+ LQ+
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 326 LDLSENN 332
L++S NN
Sbjct: 523 LNMSHNN 529
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNL 554
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
L + +DLS +L P + L+ ++ LN+SHNN + + LN ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 553 NLNGKIPPQLVEL-NALAFFSVAHNNLS 579
++ +L ++LAF ++ N+ +
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 6/159 (3%)
Query: 178 LVYLNLSRNDFNGSIP--SSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
L YL+LS FNG I S+ + LE LD H+ L + +S NL +L +S
Sbjct: 375 LKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGE-IPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L L + N F +P + +L L +S L P
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNI 333
+LSSL + M+ N+ + LN LQ+LD S N+I
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNL 554
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 183 LSRNDFNGS----IPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
L+R NG+ +P+ I ++++L LDLSHN+LT +P L SCF L++ +N
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYFFDN 303
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
L ++Y L+ N LT E+P +I L+ +R L+LSHN LT +P + Q++ ++
Sbjct: 249 LTRLY---LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FD 302
Query: 553 NLNGKIPPQLVELNALAFFSVAHNNLSGK 581
N+ +P + L L F V N L +
Sbjct: 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 493 LNKMYGVDLSCNKLT-GEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN-QVESLDIS 550
+ + +D+S N ++ E S + +LN+S N LT I F L +++ LD+
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLH 429
Query: 551 YNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPD 610
N + IP Q+V+L AL +VA N L + T+ ++ NP C P D
Sbjct: 430 SNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488
Query: 611 CDVAAVPEASNEEDGNS 627
+ + S +E G++
Sbjct: 489 YLSRWLNKNSQKEQGSA 505
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLT--GEIPEHLAMSCFNLEFLVLSENS 236
++L+ S N ++ + G + LE L L NQL +I E + +L+ L +S+NS
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQNS 385
Query: 237 L-LGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
+ + ++ + L+SL++ +N T I + L + L+ +N +IP +
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH---SNKIKSIPKQVVK 442
Query: 296 LSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
L +L ++ +ASN L+ F +L LQ + L N
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552
L + +DLS +L P + L+ ++ LN+SHNN + + LN ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 553 NLNGKIPPQLVEL-NALAFFSVAHNNLS 579
++ +L ++LAF ++ N+ +
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 6/159 (3%)
Query: 178 LVYLNLSRNDFNG--SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
L YL+LS FNG ++ S+ + LE LD H+ L + +S NL +L +S
Sbjct: 80 LKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGE-IPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L L + N F +P + +L L +S L P
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNI 333
+LSSL + M+ N+ + LN LQ+LD S N+I
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 28/285 (9%)
Query: 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXX-XITQVHLSKNM 355
+ L ++ + + HL+G +P LN L+ L LS N+ +T +++ N+
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 356 LYGPLRYGTFFNRSSIVTLDLSYNSF--SGYIPYWIERLTYLRYLILANNNLEGEVPIQL 413
L G ++ TLDLS+N S ++ L++L+ L L++N G
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF 393
Query: 414 CRLKQLRLIDLSNNNIFGQIPG----------CLDNTSLHNNGDNDDSL--VPAFNH-NV 460
QL L+DL+ + P L+ T + N L +P H N+
Sbjct: 394 KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNL 453
Query: 461 RSTYSAGSSTMEK---------EESIMFTTKEISFSYKG-KPLNKMYGVDLSCNKLTGEI 510
+ + + + E I+ + +S + L KM VDLS N LT +
Sbjct: 454 KGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDS 513
Query: 511 PPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN 555
+S L I LNL+ N++ + P L+Q ++++S+N L+
Sbjct: 514 IDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPLD 557
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 491 KPLNKMYGVDLSCNKLTGE--IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLD 548
+ L + +DLS N + Q+ L+ ++ LNLSHN G+ F Q+E LD
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Query: 549 ISYNNLNGKIP 559
+++ L+ P
Sbjct: 404 LAFTRLHINAP 414
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 324 QILDLSENNIXXXXX-XXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS 382
QIL L +N I + +++L N L G L G F + + + LDL N +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 383 GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS 441
+RL +L+ L + N L E+P + RL L + L N + G D S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 27/130 (20%)
Query: 278 LYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE-FCQLNYLQILDLSENNIXXX 336
LY+ DN + P +L +L ++ + SN L G +P+ F L L +LDL N +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 337 XXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLR 396
VHL + L + N + +P IERLT+L
Sbjct: 104 PSAVFDRL----VHLKE--------------------LFMCCNKLT-ELPRGIERLTHLT 138
Query: 397 YLILANNNLE 406
+L L N L+
Sbjct: 139 HLALDQNQLK 148
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 501 LSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544
+ CNKLT E+P I +LT + L L N L + F L+ +
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 2/127 (1%)
Query: 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240
L L N P + +L+ L L NQL G +P + S L L L N L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLY 300
+ + L L L + N T E+P+ + +HL L + N L LSSL
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 301 DIMMASN 307
+ N
Sbjct: 163 HAYLFGN 169
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 175 FPRLVYLNLSRNDF-----NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229
+ RL LNL R + +G++P L LDLSHNQL +P L + L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LP-LLGQTLPALTV 104
Query: 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI 289
L +S N L L +L L+L N P L+ LE L +++N+L +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-EL 163
Query: 290 PAWLGN-LSSLYDIMMASNHL 309
PA L N L +L +++ N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN 555
+ +DLS N++T + + ++AL L+ N + + +FS+L +E LD+SYN L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 556 GKIPPQLVELNALAFFSVAHN 576
L++L F ++ N
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN 134
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
+ RL LNL R + G + L LDLSHNQL +P L + L L +S
Sbjct: 54 YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSF 109
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L +L L+L N P L+ LE L +++N L +PA L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL 168
Query: 295 N-LSSLYDIMMASNHL 309
N L +L +++ N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
+ RL LNL R + G + L LDLSHNQL +P L + L L +S
Sbjct: 54 YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSF 109
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L +L L+L N P L+ LE L +++N L +PA L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL 168
Query: 295 N-LSSLYDIMMASNHL 309
N L +L +++ N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
+ RL LNL R + G + L LDLSHNQL +P L + L L +S
Sbjct: 54 YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSF 109
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L +L L+L N P L+ LE L +++N L +PA L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL 168
Query: 295 N-LSSLYDIMMASNHL 309
N L +L +++ N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
+ RL LNL R + G + L LDLSHNQL +P L + L L +S
Sbjct: 54 YTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSF 109
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L +L L+L N P L+ LE L +++N L +PA L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLL 168
Query: 295 N-LSSLYDIMMASNHL 309
N L +L +++ N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+++L+VL LDLNQ+T NI SPL LT+++ +LS Q+ L P N SKL +
Sbjct: 128 LSNLQVLYLDLNQIT-NI--SPLAGLTNLQ--YLSIGNAQV-SDLTPLANLSKLTTLKAD 181
Query: 61 CNEI 64
N+I
Sbjct: 182 DNKI 185
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPS-SIGDMNSLEALDLSHNQLTGEIPEHLAMSCF 225
IP VY +L L L RN+ SIPS + + SL LDL + I E
Sbjct: 127 IPNGAFVYLSKLKELWL-RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285
NL +L L+ +L + L KL L L N+ + P S HL+ L+M + +
Sbjct: 186 NLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 286 YGNIPAWLGNLSSLYDIMMASNHL 309
NL SL +I +A N+L
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNL 267
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN 555
+ +DLS N++T + + ++AL L+ N + + +FS+L +E LD+SYN L+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 556 GKIPPQLVELNALAFFSVAHN 576
L++L F ++ N
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGN 108
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 30/189 (15%)
Query: 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL-GNLSSLYDIMMASNHLQG 311
L L +N + K+ + L LY++DN L +PA + L +L + + N LQ
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 312 -PIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG-PLRYGTFFNRS 369
PI + + Q+++L+E + L +N L P R F + +
Sbjct: 100 LPIGV------FDQLVNLAE------------------LRLDRNQLKSLPPR--VFDSLT 133
Query: 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429
+ L L YN ++LT L+ L L NN L+ +L +L+ + L NN +
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 430 FGQIPGCLD 438
G D
Sbjct: 194 KRVPEGAFD 202
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 152 HLDTLYVSKNFFQGNIPLEIGVY--FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSH 209
+L+TL+V+ N Q L IGV+ L L L RN P + L L L +
Sbjct: 86 NLETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 210 NQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL 269
N+L +P+ + +L+ L L N L + L +L +L LD N +
Sbjct: 143 NELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201
Query: 270 SNCSHLEGLYMSDN 283
+ L+ L + +N
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 181 LNLSRNDFNGSIPS-SIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239
L+L N + S+PS + + L L L+ N+L +P + NLE L +++N L
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSL 299
+ L L L LD N P+ + + L L + N L L+SL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 300 YDIMMASNHLQGPIPLEFCQLNYLQILDLSENNI 333
++ + +N L+ F +L L+ L L N +
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 152 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208
Query: 61 C 61
C
Sbjct: 209 C 209
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 2/144 (1%)
Query: 293 LGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXX-XXXXXITQVHL 351
L L++L +++ N LQ F +L L+ L L EN + +T ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI 411
+ N L L G F +++ LDLSYN ++LT L+ L L N L+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 412 QLCRLKQLRLIDLSNNNIFGQIPG 435
RL L+ I L +N PG
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 516 KLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH 575
KLT + LNL+HN L + F L + LD+SYN L +L L +
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 576 NNLSGKIPEWT-AQFTTFKEDSYEGNPLLCGKP 607
N L +P+ + T+ + NP C P
Sbjct: 191 NQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHN 210
+L L + +N Q ++P + L YLNL+ N S+P + D + +L LDLS+N
Sbjct: 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167
Query: 211 QLTGEIPEHLAMSCFNLEFLVLSENSL 237
QL +PE + L+ L L +N L
Sbjct: 168 QLQS-LPEGVFDKLTQLKDLRLYQNQL 193
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 155 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211
Query: 61 C 61
C
Sbjct: 212 C 212
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 173 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
Query: 61 C 61
C
Sbjct: 230 C 230
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 173 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
Query: 61 C 61
C
Sbjct: 230 C 230
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 153 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 209
Query: 61 C 61
C
Sbjct: 210 C 210
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 173 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
Query: 61 C 61
C
Sbjct: 230 C 230
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE 234
P LV L L RN G P++ + ++ L L N++ EI + + L+ L L +
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYD 111
Query: 235 NSLLGQLFSKKNYLRKLVSLHLDANYF 261
N + + +L L SL+L +N F
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 230 LVLSENSLLGQLFSKKNYLR--KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYG 287
L+L++N L G++ S + R LV L L N TG P + SH++ L + +N +
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 288 NIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
L L + + N + +P F LN L L+L+ N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 347 TQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406
T++ L+ N L G F +V L+L N +G P E ++++ L L N ++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 407 GEVPIQLCRLKQLRLIDLSNNNIFGQIPG 435
L QL+ ++L +N I +PG
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPG 120
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 27/105 (25%)
Query: 517 LTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576
L +++ LNL N ++ V+P +F +LN + SL+++ N N LA+F+
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC--------HLAWFA---- 148
Query: 577 NLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP--LPDCDVAAVPEA 619
EW ++ S G CG P + D + +P +
Sbjct: 149 -------EW------LRKKSLNGGAARCGAPSKVRDVQIKDLPHS 180
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 80/207 (38%), Gaps = 33/207 (15%)
Query: 349 VHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGE 408
+ LSKN++ + G F S+ TL+L N + E L+ LR L L NN +E
Sbjct: 64 LQLSKNLVRK-IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Query: 409 VPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY-SAG 467
R+ LR +DL I AF V Y + G
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISE------------------AAFEGLVNLRYLNLG 164
Query: 468 SSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH 527
M K+I L ++ ++LS N+L P LT +R L L H
Sbjct: 165 ----------MCNLKDIP---NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 528 NNLTGVIPVTFSNLNQVESLDISYNNL 554
+ + F +L +E L++S+NNL
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 150 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 206
Query: 61 C 61
C
Sbjct: 207 C 207
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 155 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211
Query: 61 C 61
C
Sbjct: 212 C 212
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ++ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 175 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 231
Query: 61 C 61
C
Sbjct: 232 C 232
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 135/343 (39%), Gaps = 56/343 (16%)
Query: 267 KSLSNCSHLEGLYM---SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE------- 316
KS+ +L L S+N L P L NL+ L DI+M +N + PL
Sbjct: 54 KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 317 -------------FCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG--PLR 361
L L L+LS N I + Q++ S N + PL
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLNFSSNQVTDLKPLA 170
Query: 362 YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLR 420
T R LD+S N S + +LT L LI NN + P+ L L +L
Sbjct: 171 NLTTLER-----LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480
L N N I G L SL N D D + N + + A S + K +
Sbjct: 224 L----NGNQLKDI-GTL--ASLTNLTDLDLA-------NNQISNLAPLSGLTKLTELKLG 269
Query: 481 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSN 540
+IS L + ++L+ N+L +I P IS L + L L NN++ + PV S+
Sbjct: 270 ANQISNISPLAGLTALTNLELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPV--SS 325
Query: 541 LNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
L +++ L YNN + L L + + S HN +S P
Sbjct: 326 LTKLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 366
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV--LSENSLLGQLFSKKNYLRKLVSLHL 256
+N+L ++ S+NQLT P NL LV L N+ + + N L L L L
Sbjct: 62 LNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTL 114
Query: 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE 316
N T P L N ++L L +S N + +I A G L+SL + +SN + PL
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKPL- 169
Query: 317 FCQLNYLQILDLSEN------------NIXXXXXXXXXXXXITQVHLSKNMLYGPLR--- 361
L L+ LD+S N N+ IT + + N+ L
Sbjct: 170 -ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 362 ---YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLK 417
GT + +++ LDL+ N S P + LT L L L N + P+ L L
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 418 QLRL 421
L L
Sbjct: 287 NLEL 290
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 134/343 (39%), Gaps = 56/343 (16%)
Query: 267 KSLSNCSHLEGLYM---SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE------- 316
KS+ +L L S+N L P L NL+ L DI+M +N + PL
Sbjct: 54 KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 317 -------------FCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG--PLR 361
L L L+LS N I + Q+ S N + PL
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFSSNQVTDLKPLA 170
Query: 362 YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLR 420
T R LD+S N S + +LT L LI NN + P+ L L +L
Sbjct: 171 NLTTLER-----LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480
L N N I G L SL N D D + N + + A S + K +
Sbjct: 224 L----NGNQLKDI-GTL--ASLTNLTDLDLA-------NNQISNLAPLSGLTKLTELKLG 269
Query: 481 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSN 540
+IS L + ++L+ N+L +I P IS L + L L NN++ + PV S+
Sbjct: 270 ANQISNISPLAGLTALTNLELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPV--SS 325
Query: 541 LNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
L +++ L S N ++ L L + + S HN +S P
Sbjct: 326 LTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV--LSENSLLGQLFSKKNYLRKLVSLHL 256
+N+L ++ S+NQLT P NL LV L N+ + + N L L L L
Sbjct: 62 LNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTL 114
Query: 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE 316
N T P L N ++L L +S N + +I A G L+SL + +SN + PL
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKPL- 169
Query: 317 FCQLNYLQILDLSEN------------NIXXXXXXXXXXXXITQVHLSKNMLYGPLR--- 361
L L+ LD+S N N+ IT + + N+ L
Sbjct: 170 -ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 362 ---YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLK 417
GT + +++ LDL+ N S P + LT L L L N + P+ L L
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 418 QLRL 421
L L
Sbjct: 287 NLEL 290
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 134/343 (39%), Gaps = 56/343 (16%)
Query: 267 KSLSNCSHLEGLYM---SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE------- 316
KS+ +L L S+N L P L NL+ L DI+M +N + PL
Sbjct: 54 KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 317 -------------FCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG--PLR 361
L L L+LS N I + Q+ S N + PL
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFSSNQVTDLKPLA 170
Query: 362 YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLR 420
T R LD+S N S + +LT L LI NN + P+ L L +L
Sbjct: 171 NLTTLER-----LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480
L N N I G L SL N D D + N + + A S + K +
Sbjct: 224 L----NGNQLKDI-GTL--ASLTNLTDLDLA-------NNQISNLAPLSGLTKLTELKLG 269
Query: 481 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSN 540
+IS L + ++L+ N+L +I P IS L + L L NN++ + PV S+
Sbjct: 270 ANQISNISPLAGLTALTNLELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPV--SS 325
Query: 541 LNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
L +++ L YNN + L L + + S HN +S P
Sbjct: 326 LTKLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 366
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV--LSENSLLGQLFSKKNYLRKLVSLHL 256
+N+L ++ S+NQLT P NL LV L N+ + + N L L L L
Sbjct: 62 LNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTL 114
Query: 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLE 316
N T P L N ++L L +S N + +I A G L+SL + +SN + PL
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKPL- 169
Query: 317 FCQLNYLQILDLSEN------------NIXXXXXXXXXXXXITQVHLSKNMLYGPLR--- 361
L L+ LD+S N N+ IT + + N+ L
Sbjct: 170 -ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 228
Query: 362 ---YGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLK 417
GT + +++ LDL+ N S P + LT L L L N + P+ L L
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 418 QLRL 421
L L
Sbjct: 287 NLEL 290
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 80/207 (38%), Gaps = 33/207 (15%)
Query: 349 VHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGE 408
+ LSKN++ + G F S+ TL+L N + E L+ LR L L NN +E
Sbjct: 64 LQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Query: 409 VPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY-SAG 467
R+ LR +DL I AF V Y + G
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISE------------------AAFEGLVNLRYLNLG 164
Query: 468 SSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH 527
M K+I L ++ ++LS N+L P LT +R L L H
Sbjct: 165 ----------MCNLKDIP---NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 528 NNLTGVIPVTFSNLNQVESLDISYNNL 554
+ + F +L +E L++S+NNL
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRK 250
SIPS G ++++LDLS N++T I +C NL+ L+L + +
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS--------------R 87
Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
+ ++ DA Y G LE L +SDN+L +W G LSSL + + N Q
Sbjct: 88 INTIEGDAFYSLGS----------LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 313 IPLEFCQ-LNYLQILDLSENNIXXXXXXXXXXX----XITQVHLSKNMLYGPLRYG-TFF 366
+P F Q L L+ LDLSEN + + + LS+N L + G
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 367 NRSSIVTLDLSYNSFSGYIP---YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLID 423
++ +LD+S N+F +P W E++ +L N + G ++ C + L ++D
Sbjct: 411 TLKNLTSLDISRNTFHP-MPDSCQWPEKMRFL------NLSSTGIRVVKTCIPQTLEVLD 463
Query: 424 LSNNNI 429
+SNNN+
Sbjct: 464 VSNNNL 469
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 191 SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRK 250
SIPS G ++++LDLS N++T I +C NL+ L+L + +
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS--------------R 61
Query: 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310
+ ++ DA Y G LE L +SDN+L +W G LSSL + + N Q
Sbjct: 62 INTIEGDAFYSLGS----------LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 313 IPLEFCQ-LNYLQILDLSENNIXXXXXXXXXXX----XITQVHLSKNMLYGPLRYG-TFF 366
+P F Q L L+ LDLSEN + + + LS+N L + G
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 367 NRSSIVTLDLSYNSFSGYIP---YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLID 423
++ +LD+S N+F +P W E++ +L N + G ++ C + L ++D
Sbjct: 385 TLKNLTSLDISRNTFHP-MPDSCQWPEKMRFL------NLSSTGIRVVKTCIPQTLEVLD 437
Query: 424 LSNNNI 429
+SNNN+
Sbjct: 438 VSNNNL 443
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL---HLDANYF 261
+DLS N + E+ E +L+FL + + + L + N R L SL LD N F
Sbjct: 35 VDLSLNSI-AELNETSFSRLQDLQFLKVEQQT--PGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 262 TGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN----LSSLYDIMMASNHLQGPIPLEF 317
+ + ++LE L ++ NL G + + GN L+SL +++ N+++ P F
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 318 -CQLNYLQILDLSENNIXXXXXXXX---XXXXITQVHLSKNMLY-------GPLRYGTFF 366
+ +LDL+ N + T + LS L G + G F
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 367 NRSSIVTLDLSYNSF 381
+SI TLDLS N F
Sbjct: 210 KNTSITTLDLSGNGF 224
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 178 LVYLNLSRNDFNGSIP--SSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
L YL+LS FNG I S+ + LE LD H+ L + +S NL +L +S
Sbjct: 375 LKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGE-IPKSLSNCSHLEGLYMSDNNLYGNIPAWLG 294
N L L L + N F +P + +L L +S L P
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331
+LSSL + MASN L+ F +L LQ + L N
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNL 554
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 15/164 (9%)
Query: 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLA--------MSCFN 226
F L L L+RN ++P+SI +N L L + E+PE LA N
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 227 LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY 286
L+ L L + S N L+ L SL + + + P ++ + LE L +
Sbjct: 185 LQSLRLEWTGIRSLPASIAN-LQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTAL 242
Query: 287 GNIPAWLGNLSSLYDIMM--ASNHLQGPIPLEFCQLNYLQILDL 328
N P G + L +++ SN L +PL+ +L L+ LDL
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDL 284
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 22/210 (10%)
Query: 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
P+L L++S N+ + SL+ L LS N+LT H+ +S F
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-----HVDLSLIPSLFHANVSY 195
Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
+LL L + LDA++ + + + N L L + NNL AWL N
Sbjct: 196 NLLSTLAI------PIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLTDT--AWLLN 246
Query: 296 LSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNM 355
L ++ ++ N L+ + F ++ L+ L +S N + + + LS N
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306
Query: 356 LYGPLRYGTFFNR--------SSIVTLDLS 377
L R F+R +SIVTL LS
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTLKLS 336
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 517 LTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576
L R++ LN+SHNNL + ++ L + +LD S+N + +LAFF++ +N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 577 NLS-----GKIPEWTAQFTTF 592
+++ K +W + F
Sbjct: 556 SVACICEHQKFLQWVKEQKQF 576
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFF 571
I +L ++ LN++HN + +P FSNL + +D+SYN + Q + +N L F
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI------QTITVNDLQFL 176
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM--NSLEALDLSHN 210
+G+I + V P L YL+LSRN + S S D+ NSL LDLS N
Sbjct: 339 KGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 517 LTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576
L R++ LN+SHNNL + ++ L + +LD S+N + +LAFF++ +N
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550
Query: 577 NLS-----GKIPEWTAQFTTF 592
+++ K +W + F
Sbjct: 551 SVACICEHQKFLQWVKEQKQF 571
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDM--NSLEALDLSHN 210
+G+I + V P L YL+LSRN + S S D+ NSL LDLS N
Sbjct: 334 KGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 381
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFF 571
I +L ++ LN++HN + +P FSNL + +D+SYN + Q + +N L F
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI------QTITVNDLQFL 171
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 76/189 (40%), Gaps = 44/189 (23%)
Query: 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIP-------------------- 217
L YLNLS N+ G + + LE LD++ L + P
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 218 ----EHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLH-----------LDANYFT 262
+HL +L L L NS SK N L+ + SL +D F
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 263 GEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY 322
G L N +HL+ +S N+L G+ L +L LY + MASN+++ P L+
Sbjct: 497 G-----LRNVNHLD---LSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQ 547
Query: 323 LQILDLSEN 331
I++LS N
Sbjct: 548 QSIINLSHN 556
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 513 QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559
Q+ L ++ LNLS+N G+ F Q+E LD+++ +L+ K P
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 22/210 (10%)
Query: 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235
P+L L++S N+ + SL+ L LS N+LT H+ +S F
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-----HVDLSLIPSLFHANVSY 201
Query: 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGN 295
+LL L + LDA++ + + + N L L + NNL AWL N
Sbjct: 202 NLLSTLAI------PIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLTDT--AWLLN 252
Query: 296 LSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIXXXXXXXXXXXXITQVHLSKNM 355
L ++ ++ N L+ + F ++ L+ L +S N + + + LS N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312
Query: 356 LYGPLRYGTFFNR--------SSIVTLDLS 377
L R F+R +SIVTL LS
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIVTLKLS 342
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAW 292
SEN L QLF +N L+ L + F G SHL+ LY++ N L P
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGV 499
Query: 293 LGNLSSLYDIMMASNHL----QGPIPLEFCQLNYLQILDLSENNI 333
+L++L + + SN L +P L+ILD+S N +
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQL 538
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 99/242 (40%), Gaps = 23/242 (9%)
Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERL--TYLRYLILANN 403
+T++ LSKN + + +F +S+ ++D S N + +E L L + LA N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 404 NLEGEVPIQLCRLKQ------LRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFN 457
+L V + + L ++D+S N I G N + SL+ A
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF---SLILA-- 239
Query: 458 HNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKL 517
H++ + + +++ ++ G + + +DLS + L
Sbjct: 240 HHIMGAGFGFHNIKDPDQN----------TFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 518 TRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNN 577
++ LNL++N + + F L+ ++ L++SYN L L +A+ + N+
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 578 LS 579
++
Sbjct: 350 IA 351
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 106/250 (42%), Gaps = 52/250 (20%)
Query: 265 IPKSLSNCSHLEGLYMSDNNLYGNIPAWL-GNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
+P+SL + + L L +S NNL W L++L+ ++++ NHL F + L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 324 QILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSG 383
+ LDLS N++ +V L N + IV +D N+F
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYN--------------NHIVVVD--RNAF-- 132
Query: 384 YIPYWIERLTYLRYLILANNNLEGEVPIQLC----RLKQLRLIDLSNNNI-------FGQ 432
E + L+ L L+ N + P++L +L +L L+DLS+N + +
Sbjct: 133 ------EDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Query: 433 IPGCLDN-TSLHNNG-DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKG 490
+P + N LHNN + D L F+H Y SS M+ +E + +
Sbjct: 186 LPAWVKNGLYLHNNPLECDCKLYQLFSH---WQYRQLSSVMDFQEDL--------YCMHS 234
Query: 491 KPLNKMYGVD 500
K L+ ++ +D
Sbjct: 235 KKLHNIFSLD 244
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGE 60
+T L LSL+ NQ+ + PL LT ++ L+LS N +L N L++FS E
Sbjct: 153 LTKLDTLSLEDNQIRRIV---PLARLTKLQNLYLSKNHISDLRALRGLKNLDVLELFSQE 209
Query: 61 C 61
Sbjct: 210 A 210
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 80/220 (36%), Gaps = 30/220 (13%)
Query: 209 HNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKS 268
H +P SC NL L L N+L G +DA FTG
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAG----------------IDAAAFTG----- 77
Query: 269 LSNCSHLEGLYMSDN-NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD 327
+ LE L +SDN L P L L+ + + LQ P F L LQ L
Sbjct: 78 ---LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 328 LSENNIXXXXXXX-XXXXXITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIP 386
L +NN+ +T + L N + + F S+ L L N + P
Sbjct: 135 LQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHA-FRGLHSLDRLLLHQNHVARVHP 193
Query: 387 YWIERLTYLRYLILANNNLE---GEVPIQLCRLKQLRLID 423
+ L L L L NNL EV + L L+ LRL D
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL---EGEVPIQ-LCRLKQLRL- 421
N S + +L+LSYN + L L LA L + + P Q L LK L L
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433
Query: 422 ---IDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIM 478
+D+S+ +F +P L + +L N P N++ T S T+ + E ++
Sbjct: 434 HSLLDISSEQLFDGLPA-LQHLNLQGNH------FPK--GNIQKTNSL--QTLGRLEILV 482
Query: 479 FTTKEISF--SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPV 536
+ ++S + L M VDLS N+LT +S L I LNL+ N+++ ++P
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541
Query: 537 TFSNLNQVESLDISYNNLN 555
L+Q ++++ N L+
Sbjct: 542 LLPILSQQRTINLRQNPLD 560
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 136/339 (40%), Gaps = 49/339 (14%)
Query: 267 KSLSNCSHLEGLYM---SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
KS+ +L L S+N L P L NL+ L DI+M +N + PL L L
Sbjct: 54 KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNL 109
Query: 324 QILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG-----------PLRYGT-------F 365
L L N I + ++ LS N + L +G
Sbjct: 110 TGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL 168
Query: 366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDL 424
N +++ LD+S N S + +LT L LI NN + P+ L L +L L
Sbjct: 169 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSL--- 223
Query: 425 SNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEI 484
N N I G L SL N D D + N + + A S + K + +I
Sbjct: 224 -NGNQLKDI-GTL--ASLTNLTDLDLA-------NNQISNLAPLSGLTKLTELKLGANQI 272
Query: 485 SFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544
S L + ++L+ N+L +I P IS L + L L NN++ + PV S+L ++
Sbjct: 273 SNISPLAGLTALTNLELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPV--SSLTKL 328
Query: 545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
+ L S N ++ L L + + S HN +S P
Sbjct: 329 QRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405
+TQ++L N L L G F +S+ L+LS N ++LT L+ L L N L
Sbjct: 54 LTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
Query: 406 EG---EVPIQLCRLKQLRL 421
+ V +L +LK LRL
Sbjct: 113 QSLPDGVFDKLTQLKDLRL 131
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 136/339 (40%), Gaps = 49/339 (14%)
Query: 267 KSLSNCSHLEGLYM---SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
KS+ +L L S+N L P L NL+ L DI+M +N + PL L L
Sbjct: 59 KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNL 114
Query: 324 QILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG-----------PLRYGT-------F 365
L L N I + ++ LS N + L +G
Sbjct: 115 TGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 173
Query: 366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDL 424
N +++ LD+S N S + +LT L LI NN + P+ L L +L L
Sbjct: 174 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSL--- 228
Query: 425 SNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEI 484
N N I G L SL N D D + N + + A S + K + +I
Sbjct: 229 -NGNQLKDI-GTL--ASLTNLTDLDLA-------NNQISNLAPLSGLTKLTELKLGANQI 277
Query: 485 SFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544
S L + ++L+ N+L +I P IS L + L L NN++ + PV S+L ++
Sbjct: 278 SNISPLAGLTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISPV--SSLTKL 333
Query: 545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
+ L YNN + L L + + S HN +S P
Sbjct: 334 QRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 370
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 136/339 (40%), Gaps = 49/339 (14%)
Query: 267 KSLSNCSHLEGLYM---SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323
KS+ +L L S+N L P L NL+ L DI+M +N + PL L L
Sbjct: 54 KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNL 109
Query: 324 QILDLSENNIXXXXXXXXXXXXITQVHLSKNMLYG-----------PLRYGT-------F 365
L L N I + ++ LS N + L +G
Sbjct: 110 TGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPL 168
Query: 366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQ-LCRLKQLRLIDL 424
N +++ LD+S N S + +LT L LI NN + P+ L L +L L
Sbjct: 169 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSL--- 223
Query: 425 SNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEI 484
N N I G L SL N D D + N + + A S + K + +I
Sbjct: 224 -NGNQLKDI-GTL--ASLTNLTDLDLA-------NNQISNLAPLSGLTKLTELKLGANQI 272
Query: 485 SFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544
S L + ++L+ N+L +I P IS L + L L NN++ + PV S+L ++
Sbjct: 273 SNISPLAGLTALTNLELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPV--SSLTKL 328
Query: 545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583
+ L YNN + L L + + S HN +S P
Sbjct: 329 QRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 365
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 501 LSC--NKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNL-NQVESLDISYNNLNGK 557
L C N+L G++P S++ ++ +LNL++N +T IP F QVE+L ++N L K
Sbjct: 335 LECLYNQLEGKLPAFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL--K 390
Query: 558 IPPQLVELNALAFFSV 573
P + + +++ S
Sbjct: 391 YIPNIFDAKSVSVXSA 406
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNG 556
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNG 556
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNG 556
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNG 556
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 514 ISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNG 556
I L ++ LN++HN + +P FSNL +E LD+S N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,220,918
Number of Sequences: 62578
Number of extensions: 832564
Number of successful extensions: 2225
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 487
length of query: 699
length of database: 14,973,337
effective HSP length: 106
effective length of query: 593
effective length of database: 8,340,069
effective search space: 4945660917
effective search space used: 4945660917
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)