Query 040184
Match_columns 699
No_of_seqs 495 out of 4992
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.2E-63 7E-68 584.9 42.9 542 2-607 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-58 7.1E-63 542.4 40.6 520 26-607 68-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.8E-43 1.9E-47 347.5 6.8 381 178-620 80-464 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-40 2.3E-45 332.6 7.3 388 5-402 55-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.4E-40 2.9E-45 318.0 -15.4 476 27-579 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.8E-40 8.2E-45 314.9 -15.9 495 3-576 46-561 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.5E-36 9.8E-41 315.6 -5.1 497 7-591 3-501 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9.4E-35 2E-39 305.7 -6.1 486 4-576 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.8E-34 1.3E-38 286.5 -2.5 317 79-429 8-328 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.1E-33 4.5E-38 282.5 -3.3 372 149-608 5-380 (1255)
11 KOG4237 Extracellular matrix p 99.9 2.3E-27 5E-32 227.4 -3.8 275 152-429 68-358 (498)
12 KOG4237 Extracellular matrix p 99.9 4.4E-27 9.5E-32 225.5 -4.7 302 156-462 51-373 (498)
13 PLN03210 Resistant to P. syrin 99.9 4.9E-23 1.1E-27 243.4 26.7 309 177-553 590-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4.1E-27 238.4 26.5 341 168-577 550-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 2.5E-20 5.4E-25 204.2 17.3 263 4-317 203-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.4E-20 7.4E-25 203.1 17.8 112 203-334 204-315 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.6E-18 5.6E-23 189.9 12.1 245 4-310 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.5E-18 7.6E-23 188.8 12.2 13 201-213 221-233 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-19 6.6E-24 184.0 -1.7 59 204-262 2-64 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.9E-18 8.4E-23 175.8 2.2 276 6-308 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.5E-23 147.8 -3.6 185 337-604 26-213 (264)
22 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.4E-21 136.6 -4.4 155 126-310 32-186 (264)
23 PLN03150 hypothetical protein; 99.5 2.8E-14 6.1E-19 157.7 10.8 118 495-612 419-538 (623)
24 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.2E-17 128.2 0.1 188 25-213 119-314 (505)
25 KOG0532 Leucine-rich repeat (L 99.2 5.3E-13 1.1E-17 135.3 -4.4 175 343-580 74-248 (722)
26 KOG1259 Nischarin, modulator o 99.2 5.3E-12 1.1E-16 118.0 2.0 87 493-582 328-415 (490)
27 PLN03150 hypothetical protein; 99.2 8.5E-11 1.8E-15 130.2 10.7 114 418-584 419-533 (623)
28 KOG0532 Leucine-rich repeat (L 99.2 1.5E-12 3.2E-17 132.1 -3.1 195 319-576 73-270 (722)
29 KOG3207 Beta-tubulin folding c 99.1 1E-11 2.2E-16 122.4 0.1 163 124-286 118-284 (505)
30 KOG1909 Ran GTPase-activating 99.1 1.8E-11 4E-16 117.4 1.3 112 223-334 183-311 (382)
31 KOG1909 Ran GTPase-activating 99.1 2.1E-11 4.6E-16 116.9 0.5 118 96-213 86-226 (382)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3.1E-15 104.7 5.0 109 149-262 17-126 (175)
33 COG4886 Leucine-rich repeat (L 99.0 3.3E-10 7.2E-15 120.1 7.6 176 151-336 116-292 (394)
34 COG4886 Leucine-rich repeat (L 99.0 5.7E-10 1.2E-14 118.3 7.7 84 248-334 115-199 (394)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.8E-15 104.9 2.1 107 492-603 17-126 (175)
36 PF13855 LRR_8: Leucine rich r 98.9 6.6E-10 1.4E-14 82.3 3.1 59 519-577 2-60 (61)
37 KOG1259 Nischarin, modulator o 98.9 3.2E-10 6.9E-15 106.3 1.5 130 271-407 282-413 (490)
38 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 81.4 3.5 61 494-554 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 2.6E-10 5.7E-15 120.9 -0.7 224 294-583 92-322 (414)
40 KOG0531 Protein phosphatase 1, 98.8 6.8E-10 1.5E-14 117.7 -1.0 243 295-604 70-319 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 6.7E-09 1.4E-13 117.6 5.6 128 177-308 524-653 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.8 1E-08 2.3E-13 116.1 7.0 127 79-210 524-652 (889)
43 KOG1859 Leucine-rich repeat pr 98.6 1.1E-09 2.4E-14 114.5 -7.7 108 493-605 186-294 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.5 3.2E-09 6.9E-14 99.7 -4.5 177 128-307 186-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 5.5E-09 1.2E-13 98.1 -4.2 178 152-331 186-373 (419)
46 KOG2982 Uncharacterized conser 98.4 8.3E-08 1.8E-12 90.4 2.4 83 343-425 198-287 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.4 8.7E-08 1.9E-12 89.1 1.5 243 79-334 31-316 (388)
48 KOG1859 Leucine-rich repeat pr 98.4 5.6E-09 1.2E-13 109.4 -8.1 127 103-237 165-291 (1096)
49 KOG2982 Uncharacterized conser 98.2 5.3E-07 1.1E-11 85.1 1.7 58 224-281 223-287 (418)
50 KOG4341 F-box protein containi 98.1 1.2E-07 2.5E-12 93.7 -5.3 257 76-332 162-437 (483)
51 KOG4579 Leucine-rich repeat (L 98.1 2.8E-07 6E-12 76.8 -2.6 89 494-585 77-165 (177)
52 KOG4579 Leucine-rich repeat (L 98.0 3.1E-07 6.8E-12 76.5 -3.2 106 129-238 29-136 (177)
53 COG5238 RNA1 Ran GTPase-activa 97.9 6.6E-06 1.4E-10 76.9 3.6 142 96-238 86-255 (388)
54 KOG3665 ZYG-1-like serine/thre 97.9 6.8E-06 1.5E-10 91.2 3.9 149 79-230 123-280 (699)
55 PF13306 LRR_5: Leucine rich r 97.9 3.5E-05 7.7E-10 67.2 7.0 123 96-227 6-128 (129)
56 KOG1644 U2-associated snRNP A' 97.9 3E-05 6.5E-10 69.5 6.1 108 172-282 38-149 (233)
57 KOG4341 F-box protein containi 97.9 1.1E-06 2.4E-11 86.9 -3.2 259 1-260 163-437 (483)
58 PF12799 LRR_4: Leucine Rich r 97.8 9.2E-06 2E-10 54.8 2.1 36 519-555 2-37 (44)
59 PF12799 LRR_4: Leucine Rich r 97.8 1.1E-05 2.3E-10 54.5 2.4 38 542-580 1-38 (44)
60 PF13306 LRR_5: Leucine rich r 97.8 7.2E-05 1.6E-09 65.2 7.0 101 175-281 11-111 (129)
61 KOG3665 ZYG-1-like serine/thre 97.7 8.4E-06 1.8E-10 90.4 0.5 136 52-191 122-265 (699)
62 PRK15386 type III secretion pr 97.7 0.00012 2.6E-09 74.8 7.8 32 518-552 156-187 (426)
63 KOG1644 U2-associated snRNP A' 97.6 6.3E-05 1.4E-09 67.5 4.6 82 519-602 43-125 (233)
64 PRK15386 type III secretion pr 97.4 0.00053 1.2E-08 70.2 8.9 137 365-577 48-188 (426)
65 KOG1947 Leucine rich repeat pr 97.1 7.6E-05 1.7E-09 81.7 -1.8 35 371-405 403-439 (482)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00061 1.3E-08 64.2 2.5 107 23-134 39-150 (260)
67 KOG1947 Leucine rich repeat pr 96.8 0.00013 2.8E-09 79.8 -2.6 127 100-236 241-373 (482)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00053 1.1E-08 64.6 1.2 12 126-137 64-75 (260)
69 KOG2123 Uncharacterized conser 96.6 0.00011 2.4E-09 69.1 -4.0 100 102-206 19-123 (388)
70 KOG2123 Uncharacterized conser 96.1 0.00029 6.3E-09 66.4 -4.5 18 365-382 84-101 (388)
71 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.2E-07 33.2 0.4 12 544-555 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3E-07 32.6 0.5 19 520-539 2-20 (22)
73 KOG4308 LRR-containing protein 93.4 0.0013 2.8E-08 70.2 -9.3 187 80-287 89-304 (478)
74 KOG4308 LRR-containing protein 92.8 0.00086 1.9E-08 71.4 -11.7 137 103-239 145-304 (478)
75 KOG0473 Leucine-rich repeat pr 92.6 0.0052 1.1E-07 56.7 -5.1 84 493-579 41-124 (326)
76 KOG3864 Uncharacterized conser 92.6 0.015 3.2E-07 52.8 -2.3 84 27-111 101-185 (221)
77 smart00370 LRR Leucine-rich re 91.8 0.15 3.3E-06 29.7 2.2 21 1-22 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 91.8 0.15 3.3E-06 29.7 2.2 21 1-22 1-21 (26)
79 KOG3864 Uncharacterized conser 91.8 0.024 5.1E-07 51.5 -2.0 83 79-161 102-186 (221)
80 TIGR00864 PCC polycystin catio 91.3 0.042 9.2E-07 68.4 -1.2 36 548-583 1-36 (2740)
81 smart00370 LRR Leucine-rich re 90.6 0.18 3.9E-06 29.3 1.7 13 543-555 3-15 (26)
82 smart00369 LRR_TYP Leucine-ric 90.6 0.18 3.9E-06 29.3 1.7 13 543-555 3-15 (26)
83 PF13504 LRR_7: Leucine rich r 90.5 0.19 4.1E-06 25.9 1.5 11 202-212 3-13 (17)
84 KOG0473 Leucine-rich repeat pr 90.4 0.01 2.2E-07 54.8 -5.6 89 512-603 36-124 (326)
85 PF13516 LRR_6: Leucine Rich r 84.4 0.18 4E-06 28.6 -0.9 15 542-556 2-16 (24)
86 smart00365 LRR_SD22 Leucine-ri 75.6 2.1 4.6E-05 24.9 1.5 13 543-555 3-15 (26)
87 KOG4242 Predicted myosin-I-bin 70.8 24 0.00051 37.1 8.6 16 319-334 438-453 (553)
88 KOG4242 Predicted myosin-I-bin 69.9 28 0.0006 36.6 8.9 59 371-429 415-480 (553)
89 smart00364 LRR_BAC Leucine-ric 69.0 3.4 7.4E-05 24.0 1.4 13 543-555 3-15 (26)
90 smart00368 LRR_RI Leucine rich 65.7 5.2 0.00011 23.7 1.8 14 27-40 2-15 (28)
91 KOG3763 mRNA export factor TAP 65.0 3 6.6E-05 44.3 1.1 37 25-62 216-254 (585)
92 PF15102 TMEM154: TMEM154 prot 55.1 8.7 0.00019 33.2 2.0 23 640-662 66-88 (146)
93 PHA03099 epidermal growth fact 52.0 9.6 0.00021 31.8 1.7 53 611-665 80-132 (139)
94 TIGR00864 PCC polycystin catio 49.8 9.9 0.00022 48.8 2.2 33 524-556 1-33 (2740)
95 smart00367 LRR_CC Leucine-rich 45.0 16 0.00034 21.0 1.5 13 26-38 1-13 (26)
96 smart00082 LRRCT Leucine rich 40.9 5.3 0.00012 27.6 -1.2 18 600-622 1-18 (51)
97 KOG3763 mRNA export factor TAP 38.3 17 0.00037 38.9 1.5 60 79-140 219-283 (585)
98 PF04478 Mid2: Mid2 like cell 23.5 25 0.00054 30.7 -0.2 7 635-641 51-57 (154)
99 PF13908 Shisa: Wnt and FGF in 22.7 98 0.0021 28.3 3.6 10 611-620 52-61 (179)
100 PF08114 PMP1_2: ATPase proteo 21.0 85 0.0018 20.4 1.8 20 635-654 11-30 (43)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-63 Score=584.95 Aligned_cols=542 Identities=32% Similarity=0.472 Sum_probs=500.6
Q ss_pred CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184 2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE 81 (699)
Q Consensus 2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 81 (699)
.+++.|+|++|.++|.++. +|..+++|++|+|++|.+++.+|...+..+++|++|++++|.+.+..+. ..+++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc----cccCCCC
Confidence 3578999999999988877 8999999999999999999889977777999999999999998764432 2345899
Q ss_pred EEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCc
Q 040184 82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN 161 (699)
Q Consensus 82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 161 (699)
+|++++|.+++..|..+.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 99999999999999999999999999999999988888875 89999999999999999999999999999999999999
Q ss_pred cCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC
Q 040184 162 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL 241 (699)
Q Consensus 162 ~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 241 (699)
++++.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..
T Consensus 223 ~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 223 NLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred ccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCC
Confidence 999889988876 78999999999999999999999999999999999999988888775 6999999999999999999
Q ss_pred cccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC
Q 040184 242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN 321 (699)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 321 (699)
|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..++.++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEc
Q 040184 322 YLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLIL 400 (699)
Q Consensus 322 ~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 400 (699)
+|+.|++++|.+.+..|..+ .+++|+.|++++|.+.+..+.. +..++.|+.|++++|.+++..+..+..+++|+.|++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 99999999999998887765 7899999999999998877766 899999999999999999999999999999999999
Q ss_pred ccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEe
Q 040184 401 ANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFT 480 (699)
Q Consensus 401 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (699)
++|++.+..|..+ ..++|+.|++++|++++..|..+..
T Consensus 460 ~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~----------------------------------------- 497 (968)
T PLN00113 460 ARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS----------------------------------------- 497 (968)
T ss_pred cCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-----------------------------------------
Confidence 9999998888765 4589999999999999888876654
Q ss_pred ecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCc
Q 040184 481 TKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPP 560 (699)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 560 (699)
+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|||++|++++.+|.
T Consensus 498 ------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 498 ------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 34899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCC
Q 040184 561 QLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKP 607 (699)
Q Consensus 561 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 607 (699)
.+..+++|+.+++++|++++.+|.. .++.++...++.|||.+|+.+
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 9999999999999999999999975 467788888999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-58 Score=542.45 Aligned_cols=520 Identities=30% Similarity=0.457 Sum_probs=477.5
Q ss_pred CCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCC
Q 040184 26 LTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLE 105 (699)
Q Consensus 26 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~ 105 (699)
..+++.|+|++|.+++.++ ..|..+++|+.|++++|++.+..+... +..+.+|++|++++|++++.+|. ..+++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 4589999999999997765 569999999999999999875433321 23556899999999999888775 4689999
Q ss_pred EEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcC
Q 040184 106 YVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSR 185 (699)
Q Consensus 106 ~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~ 185 (699)
+|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++
T Consensus 144 ~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~ 221 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGY 221 (968)
T ss_pred EEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcC
Confidence 99999999998888875 89999999999999999999999999999999999999999888988876 78999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccC
Q 040184 186 NDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEI 265 (699)
Q Consensus 186 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 265 (699)
|.+.+.+|..++++++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 99999999999999999999999999998888776 47999999999999999889999999999999999999999999
Q ss_pred CccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCC
Q 040184 266 PKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHS 344 (699)
Q Consensus 266 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~ 344 (699)
|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ ...
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998777665 678
Q ss_pred CccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEEC
Q 040184 345 SITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDL 424 (699)
Q Consensus 345 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 424 (699)
+|+.+++++|.+.+..+.. +..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 9999999999998887766 889999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCC
Q 040184 425 SNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCN 504 (699)
Q Consensus 425 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 504 (699)
++|++.+.+|..+. .++|+.|++++|
T Consensus 460 ~~n~~~~~~p~~~~------------------------------------------------------~~~L~~L~ls~n 485 (968)
T PLN00113 460 ARNKFFGGLPDSFG------------------------------------------------------SKRLENLDLSRN 485 (968)
T ss_pred cCceeeeecCcccc------------------------------------------------------cccceEEECcCC
Confidence 99999887775432 247999999999
Q ss_pred ccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCC
Q 040184 505 KLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584 (699)
Q Consensus 505 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 584 (699)
++++..|..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCccCCCCCCCCCC
Q 040184 585 WTAQFTTFKEDSYEGNPLLCGKP 607 (699)
Q Consensus 585 ~~~~~~~l~~~~~~~Np~~C~~~ 607 (699)
.+..++.++.+++++|++.+..|
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCC
Confidence 99889999999999999987544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-43 Score=347.47 Aligned_cols=381 Identities=23% Similarity=0.273 Sum_probs=271.7
Q ss_pred CcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEcc
Q 040184 178 LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLD 257 (699)
Q Consensus 178 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 257 (699)
-++|++++|.+..+.+..|.++++|+++++..|.++ .||.... ...+|+.|+|.+|.|.....+.+..++.|+.|||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 344555555555444445555555555555555554 4544331 23345555555555544444444455555555555
Q ss_pred CCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc-
Q 040184 258 ANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS- 336 (699)
Q Consensus 258 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~- 336 (699)
.|.|+.+....|..-.++++|+|++|.|+......|.++.+|..|.+++|+++...+..|..+++|+.|++..|+|...
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 5555544444444445555555555555555555555555555555555555555555555555555555555555422
Q ss_pred CCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCC
Q 040184 337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416 (699)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 416 (699)
.-.+.++++|+.+.+..|++. .+..++|..+.++++|+|+.|++...-.+|+.++++|+.|+++.|.|..+.++.+..+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 112225555566666666553 3445568899999999999999998888899999999999999999998888888899
Q ss_pred CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcc
Q 040184 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM 496 (699)
Q Consensus 417 ~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 496 (699)
++|+.|++++|+++...++.|.. +..|
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~-----------------------------------------------------L~~L 343 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRV-----------------------------------------------------LSQL 343 (873)
T ss_pred ccceeEeccccccccCChhHHHH-----------------------------------------------------HHHh
Confidence 99999999999998766665544 3489
Q ss_pred cEEEccCCccCccCCccccccCccCeEEccCCcCcccCC---ccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184 497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP---VTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV 573 (699)
Q Consensus 497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 573 (699)
++|+|++|++...-...|..+++|++|||++|.++..+. ..|..+++|+.|++.+|+|..+....|..+++|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 999999999998888889999999999999999987655 35788999999999999999777789999999999999
Q ss_pred ccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184 574 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 620 (699)
Q Consensus 574 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~ 620 (699)
.+|.+....|..|.++ .|+++-+..-.++| +|+..|++.|.
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC-----DCql~Wl~qWl 464 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLC-----DCQLKWLAQWL 464 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceEE-----eccHHHHHHHH
Confidence 9999999999999888 89999888889999 99999988885
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-40 Score=332.58 Aligned_cols=388 Identities=22% Similarity=0.209 Sum_probs=324.5
Q ss_pred cEEeCCCCCCCCCCCcccccCC--CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184 5 RVLSLDLNQLTGNISSSPLIHL--TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES 82 (699)
Q Consensus 5 ~~L~ls~n~l~~~i~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~ 82 (699)
+.||.+++.+. .++...+..+ +.-+.||+|+|+++ .+....|.++++|+.+.+..|.++.++... ....+|+.
T Consensus 55 ~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~---~~sghl~~ 129 (873)
T KOG4194|consen 55 RLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFG---HESGHLEK 129 (873)
T ss_pred eeeecCccccc-cccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccc---ccccceeE
Confidence 46788888876 5544344432 34566999999998 777788999999999999999987664432 22237999
Q ss_pred EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc
Q 040184 83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF 162 (699)
Q Consensus 83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 162 (699)
|+|.+|.|+.+-.+.+..++.|++||||.|.++ ++|...|..-.++++|+|++|+|+....+.|..+.+|.+|.|++|+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 999999999998899999999999999999998 7887777777899999999999999999999999999999999999
Q ss_pred CCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCc
Q 040184 163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242 (699)
Q Consensus 163 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 242 (699)
++ .+|...|+.+++|+.|+|..|+|.-..-..|.++++|+.|.+..|.+. .+..+.|..+.++++|+|+.|++...-.
T Consensus 209 it-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 209 IT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhc
Confidence 98 899999998999999999999998555678999999999999999998 8888888899999999999999988777
Q ss_pred ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCC
Q 040184 243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY 322 (699)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 322 (699)
.++-++..|+.|+++.|.|..+-+++...+++|+.|+|++|+++...+..|..+..|++|.++.|.+.......|..+.+
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 88889999999999999999888899999999999999999999888889999999999999999998777788899999
Q ss_pred CcEEEcccccCcccCCCC---C-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEE
Q 040184 323 LQILDLSENNISGSLPSC---S-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYL 398 (699)
Q Consensus 323 L~~L~l~~n~i~~~~~~~---~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 398 (699)
|++||++.|.+...+... + ++++|++|.+.+|++. .++..+|.+++.|++|||.+|.|..+-+.+|..+ .|++|
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence 999999999987544322 1 5666666666666663 3444446666666666666666666666666666 66666
Q ss_pred Eccc
Q 040184 399 ILAN 402 (699)
Q Consensus 399 ~L~~ 402 (699)
.+..
T Consensus 445 v~nS 448 (873)
T KOG4194|consen 445 VMNS 448 (873)
T ss_pred hhcc
Confidence 5543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-40 Score=317.98 Aligned_cols=476 Identities=25% Similarity=0.339 Sum_probs=265.6
Q ss_pred CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCCE
Q 040184 27 TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEY 106 (699)
Q Consensus 27 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~ 106 (699)
..|..|.+++|.+. .+. +.+.++..|.+|++.+|.....++.. .....++.++.+.|+++ .+|+.+....+++.
T Consensus 45 v~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~~lp~ai---g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLSQLPAAI---GELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred cchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhhhCCHHH---HHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 45566666666654 222 33555666666666666554433222 12224555555655553 34555555556666
Q ss_pred EEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCC
Q 040184 107 VDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186 (699)
Q Consensus 107 L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n 186 (699)
++.++|.+. ++++.+ ..+..|+.++..+|++.. .|..+..+.++..+++.+|+++ ..|+...+ ++.|++||...|
T Consensus 119 l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N 193 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSN 193 (565)
T ss_pred hhcccccee-ecCchH-HHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchh
Confidence 666666555 444443 455555666655555553 3445555555666666666655 34444433 455666666555
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCC
Q 040184 187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIP 266 (699)
Q Consensus 187 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 266 (699)
-++ .+|..++.+.+|+.|++..|++. .+|+ |.+|..|+++.++.|.+.-...+....++.+..||+..|+++ ..|
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCc
Confidence 554 45555566666666666666665 5552 234556666666666554332233335556666666666665 455
Q ss_pred ccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC--CCcEEE-------ccccc-----
Q 040184 267 KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN--YLQILD-------LSENN----- 332 (699)
Q Consensus 267 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~-------l~~n~----- 332 (699)
+.+..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+..+-.+.+..=+ -|++|. ++...
T Consensus 269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 55555556666666666655 345555555 566666666554321111100000 000000 00000
Q ss_pred ----CcccCCCCCCCCCccEEEccCccccccCCcccccCC--CCccEEECCCCCCCCCcChhhhcCCCCCE-EEcccCcC
Q 040184 333 ----ISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNR--SSIVTLDLSYNSFSGYIPYWIERLTYLRY-LILANNNL 405 (699)
Q Consensus 333 ----i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~-L~L~~n~l 405 (699)
..+..|......+.+.|++++-+++ ..|...|..- .-...++++.|++. .+|..+..+..+.+ +.+++|++
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 0011112223445666666666653 3444434322 23566777777776 45555555554433 44444444
Q ss_pred CCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeeccee
Q 040184 406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS 485 (699)
Q Consensus 406 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (699)
. .+|..++.+++|..|++++|.+- .+|..++.+
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l--------------------------------------------- 457 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL--------------------------------------------- 457 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhhh---------------------------------------------
Confidence 4 66777777777778888777764 445444332
Q ss_pred eeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC
Q 040184 486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL 565 (699)
Q Consensus 486 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 565 (699)
..|+.||+|.|++. ..|..+..+..|+.+-.++|++....|+.+.++.+|.+|||.+|.+. .+|..++++
T Consensus 458 --------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 458 --------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred --------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 25777888888777 66777777777777777777777677776777888888888888887 677777888
Q ss_pred CCCCeeecccCcCc
Q 040184 566 NALAFFSVAHNNLS 579 (699)
Q Consensus 566 ~~L~~L~l~~N~l~ 579 (699)
++|++|.++||++.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 88888888888776
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.8e-40 Score=314.92 Aligned_cols=495 Identities=23% Similarity=0.295 Sum_probs=376.6
Q ss_pred CCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184 3 SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES 82 (699)
Q Consensus 3 ~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~ 82 (699)
.++.|.++.|++. .+.+ .+.++..|++|++++|+.. +.| .+++.+..++.++.++|++...+... ....+++.
T Consensus 46 ~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls~lp~~i---~s~~~l~~ 118 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLSELPEQI---GSLISLVK 118 (565)
T ss_pred chhhhhhccCchh-hccH-hhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHhhccHHH---hhhhhhhh
Confidence 3667889999998 5544 4889999999999999987 666 45888899999999999887654433 33447899
Q ss_pred EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc
Q 040184 83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF 162 (699)
Q Consensus 83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 162 (699)
++.+.|.+. ..++.++.+..++.++-.+|++. ..|..+ ..+.+|..+++.+|++....+..+. ++.|++||...|-
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL 194 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence 999999885 55667888999999999999998 677775 6888999999999998875555444 8899999999998
Q ss_pred CCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCc
Q 040184 163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242 (699)
Q Consensus 163 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 242 (699)
+. .+|.+++. +.+|.-|+|.+|.|. ..| .|.+|..|++|+++.|.+. .+|++....++++..||+..|++. ..|
T Consensus 195 L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 195 LE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred hh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc
Confidence 86 88998887 778999999999998 566 7899999999999999998 899999888999999999999986 668
Q ss_pred ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccC--CCcEEe-------ccCCcc----
Q 040184 243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS--SLYDIM-------MASNHL---- 309 (699)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~-------l~~n~~---- 309 (699)
+.+..+++|..||+++|.|+ ..|..++++ .|+.|.+.+|.+...-.+.+..-+ -|++|. ++...-
T Consensus 269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 88888999999999999999 678889998 899999999987532111111100 011110 111100
Q ss_pred ccc-CCc---cccCCCCCcEEEcccccCcccCCCCCC---CCCccEEEccCccccccCCcccccCCCCcc-EEECCCCCC
Q 040184 310 QGP-IPL---EFCQLNYLQILDLSENNISGSLPSCSS---HSSITQVHLSKNMLYGPLRYGTFFNRSSIV-TLDLSYNSF 381 (699)
Q Consensus 310 ~~~-~~~---~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~Ls~n~i 381 (699)
... .+. ....+.+.++|++++-+++......+. -.-+...++++|++. .+|.. +..+..+. .+.+++|.+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~-L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKR-LVELKELVTDLVLSNNKI 424 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhh-hHHHHHHHHHHHhhcCcc
Confidence 000 111 123455788899988888855544443 234788999999984 45554 44444443 456666555
Q ss_pred CCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccc
Q 040184 382 SGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVR 461 (699)
Q Consensus 382 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (699)
+.+|..++.+++|+.|++++|-+. .+|..+..+..|+.|+++.|+|. ..|.++...
T Consensus 425 -sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l--------------------- 480 (565)
T KOG0472|consen 425 -SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL--------------------- 480 (565)
T ss_pred -ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH---------------------
Confidence 478899999999999999999887 78888889999999999999885 666655432
Q ss_pred ccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCC
Q 040184 462 STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNL 541 (699)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 541 (699)
..++.+-.++|++....|..+.++.+|.+|||.+|.+. .+|..++++
T Consensus 481 --------------------------------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 481 --------------------------------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred --------------------------------HHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 36677777889999777777999999999999999999 778899999
Q ss_pred CCCCEEeCCCCcccccCCcccccCCCCCeeecccC
Q 040184 542 NQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576 (699)
Q Consensus 542 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 576 (699)
++|++|++++|.+. ..+..+--......+..-++
T Consensus 528 tnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred cceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence 99999999999998 55544433334444443333
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-36 Score=315.58 Aligned_cols=497 Identities=25% Similarity=0.265 Sum_probs=326.0
Q ss_pred EeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEcc
Q 040184 7 LSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALS 86 (699)
Q Consensus 7 L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls 86 (699)
+|.|.+++. .||. .+..-..+.+|+++.|-+. +.|.+...+.-+|+.||+++|.+...+... ....+|+.|+++
T Consensus 3 vd~s~~~l~-~ip~-~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i---t~l~~L~~ln~s 76 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPE-QILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQI---TLLSHLRQLNLS 76 (1081)
T ss_pred cccccccCc-ccch-hhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchh---hhHHHHhhcccc
Confidence 567777776 6666 3444445788888887765 455555666666778888777665432211 222367777887
Q ss_pred CCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCcc
Q 040184 87 GSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGN 166 (699)
Q Consensus 87 ~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 166 (699)
.|.|. ..|....++.+|+++.|.+|.+. ..|..+ ..+.+|++|++++|.+.. .|..+..++.+..+..++|.-..
T Consensus 77 ~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~- 151 (1081)
T KOG0618|consen 77 RNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQ- 151 (1081)
T ss_pred hhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-HhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhh-
Confidence 77774 34566677777888888777776 667664 677778888888777753 56666667777777777772111
Q ss_pred CchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCccccc
Q 040184 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN 246 (699)
Q Consensus 167 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 246 (699)
.+++ ..++.+++..|.+.+.++..+..+.+ .|++++|.+. .+.. ..+.+|+.+....|.+.....
T Consensus 152 ---~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl---s~~~~l~~l~c~rn~ls~l~~---- 216 (1081)
T KOG0618|consen 152 ---RLGQ--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL---SNLANLEVLHCERNQLSELEI---- 216 (1081)
T ss_pred ---hhcc--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh---hhccchhhhhhhhcccceEEe----
Confidence 1222 13666677777766666666666555 6777777765 3222 246677777777776643221
Q ss_pred CCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326 (699)
Q Consensus 247 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 326 (699)
..++++.|+.++|.++...+.. -..+|++++++.|+++ ..|+++..+.+|+.+....|.+. ..|..+...++|+.|
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred cCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 2467777777777777333322 2246777888887777 45577777888888888887775 566667777778888
Q ss_pred EcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCC-CccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcC
Q 040184 327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRS-SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405 (699)
Q Consensus 327 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 405 (699)
++..|.+....+......+|+.|++..|++.. .|...+.... ++..++.+.|.+.......-..++.|+.|++.+|.+
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 88877777555555567777888887777743 3333243333 366777777776644332333456688888888888
Q ss_pred CCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeeccee
Q 040184 406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS 485 (699)
Q Consensus 406 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (699)
+...-..+.+.+.|+.|+|++|++......++.+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k---------------------------------------------- 405 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK---------------------------------------------- 405 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhc----------------------------------------------
Confidence 8766667778888888888888875332223322
Q ss_pred eeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccC-Cccccc
Q 040184 486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI-PPQLVE 564 (699)
Q Consensus 486 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~ 564 (699)
++.|++|+||+|+++ .+|..+..++.|++|...+|.+. ..| .+..+++|+.+|+|.|+++... |....
T Consensus 406 -------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p- 474 (1081)
T KOG0618|consen 406 -------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP- 474 (1081)
T ss_pred -------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-
Confidence 347888888888888 56788888888888888888888 555 7788888888888888887433 33322
Q ss_pred CCCCCeeecccCcCcccCCCCCcCCCC
Q 040184 565 LNALAFFSVAHNNLSGKIPEWTAQFTT 591 (699)
Q Consensus 565 l~~L~~L~l~~N~l~~~~~~~~~~~~~ 591 (699)
-+.|++||+++|.-.......+..+..
T Consensus 475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred CcccceeeccCCcccccchhhhHHhhh
Confidence 278888888888743333333333333
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.4e-35 Score=305.69 Aligned_cols=486 Identities=23% Similarity=0.282 Sum_probs=381.3
Q ss_pred CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184 4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV 83 (699)
Q Consensus 4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L 83 (699)
++.|+++.|-+- ..|-.+..++-+|+.||+|+|++. +.|. .+..+++|+.|.++.|.+...+ .....+.+|+++
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~vp---~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRSVP---SSCSNMRNLQYL 96 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhhCc---hhhhhhhcchhh
Confidence 567888888876 555545677778999999999997 6773 5788999999999999886654 222455589999
Q ss_pred EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC
Q 040184 84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF 163 (699)
Q Consensus 84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i 163 (699)
.|.+|.+ ...|..+..+++|+.|++++|.+. .+|..+ ..++.++.+..++|..... ++.. .++.+++..|.+
T Consensus 97 nL~~n~l-~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l 168 (1081)
T KOG0618|consen 97 NLKNNRL-QSLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQR----LGQT-SIKKLDLRLNVL 168 (1081)
T ss_pred eeccchh-hcCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhh----hccc-cchhhhhhhhhc
Confidence 9999887 467888999999999999999998 788776 7889999999999932221 2222 278888999988
Q ss_pred CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcc
Q 040184 164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS 243 (699)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 243 (699)
.+.++.++.. +.+ .|+|.+|.+. -..+..++.|+.|....|++. .+. ..-++++.|+.++|.+....+.
T Consensus 169 ~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~ 237 (1081)
T KOG0618|consen 169 GGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH 237 (1081)
T ss_pred ccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc
Confidence 8888877764 333 6999999986 245678889999999999887 443 2467899999999998733322
Q ss_pred cccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCC
Q 040184 244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYL 323 (699)
Q Consensus 244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 323 (699)
....+|+++++++|+++ ..|.++..+.+|+.+...+|.++ ..|..+...++|+.|.+..|.+. -+|....+++.|
T Consensus 238 --p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 238 --PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred --cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence 23578999999999999 56799999999999999999996 67888888899999999999998 567777889999
Q ss_pred cEEEcccccCcccCCCCC--CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcc
Q 040184 324 QILDLSENNISGSLPSCS--SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILA 401 (699)
Q Consensus 324 ~~L~l~~n~i~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 401 (699)
++|++..|.+....+..+ ...++..++.+.|++......+ =...+.|+.|.+.+|.+++..-..+.++++|+.|+|+
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 999999999985444333 2334677777777774433222 2346679999999999998877788899999999999
Q ss_pred cCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEee
Q 040184 402 NNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTT 481 (699)
Q Consensus 402 ~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (699)
+|++.......+.+++.|+.|++|+|+++ .+|.++.++
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~----------------------------------------- 429 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL----------------------------------------- 429 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh-----------------------------------------
Confidence 99998666667889999999999999997 555555543
Q ss_pred cceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040184 482 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ 561 (699)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 561 (699)
..|++|...+|++. ..| .+..++.|+.+|+|.|.++...-..-..-++|++|||++|.=.......
T Consensus 430 ------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~ 495 (1081)
T KOG0618|consen 430 ------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT 495 (1081)
T ss_pred ------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhh
Confidence 47888999999998 566 7999999999999999997543322223389999999999844355566
Q ss_pred cccCCCCCeeecccC
Q 040184 562 LVELNALAFFSVAHN 576 (699)
Q Consensus 562 l~~l~~L~~L~l~~N 576 (699)
|..+..+...++.-|
T Consensus 496 l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 496 LKVLKSLSQMDITLN 510 (1081)
T ss_pred hHHhhhhhheecccC
Confidence 777777777777666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.8e-34 Score=286.46 Aligned_cols=317 Identities=26% Similarity=0.349 Sum_probs=250.6
Q ss_pred cccEEEccCCcCc-cccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEE
Q 040184 79 QLESVALSGSGIH-ATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLY 157 (699)
Q Consensus 79 ~L~~L~ls~~~i~-~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 157 (699)
-.+-+|+++|.++ +..|.....+++++-|.|...++. .+|+.+ +.+.+|++|.+++|++.. +...+..++.|+.++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh
Confidence 4667888888888 568888889999999999998887 888886 889999999999998875 356688889999999
Q ss_pred ccCccCC-ccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc
Q 040184 158 VSKNFFQ-GNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236 (699)
Q Consensus 158 l~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 236 (699)
+..|++. .-+|.++|+ +..|..|||++|+++ ..|..+..-.++-+|+|++|+|. .||..+|.++..|-.||||+|.
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 9999886 348999998 789999999999998 78888888889999999999998 9999999899999999999998
Q ss_pred CCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCc-CcCchhhhccCCCcEEeccCCcccccCCc
Q 040184 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY-GNIPAWLGNLSSLYDIMMASNHLQGPIPL 315 (699)
Q Consensus 237 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 315 (699)
+. .+|..+..+.+|++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 85 56667788889999999998876444445666777788888876543 346667777777777777777776 6777
Q ss_pred cccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCC
Q 040184 316 EFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYL 395 (699)
Q Consensus 316 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 395 (699)
++..+++|+.|++++|.|+.. + .. .....+|++|++|.|+++ .+|+++..+++|
T Consensus 240 cly~l~~LrrLNLS~N~iteL-------------~-----------~~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL 293 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITEL-------------N-----------MT-EGEWENLETLNLSRNQLT-VLPDAVCKLTKL 293 (1255)
T ss_pred HHhhhhhhheeccCcCceeee-------------e-----------cc-HHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence 777777777777777776621 1 11 334567888888888887 678888888888
Q ss_pred CEEEcccCcCCC-CCCcccCCCCCCCEEECcCCcc
Q 040184 396 RYLILANNNLEG-EVPIQLCRLKQLRLIDLSNNNI 429 (699)
Q Consensus 396 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~i 429 (699)
+.|...+|+++- -+|..++.+.+|+.+..++|.+
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 888888888762 3566677777777666666665
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-33 Score=282.48 Aligned_cols=372 Identities=27% Similarity=0.348 Sum_probs=268.3
Q ss_pred CCCCCCEEEccCccCC-ccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCC
Q 040184 149 PHWHLDTLYVSKNFFQ-GNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL 227 (699)
Q Consensus 149 ~l~~L~~L~l~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 227 (699)
-++-.+-.|+++|.++ +..|.++.+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhh
Confidence 3455677888888887 567777766 678888888888887 68888888888888888888887 555555 357888
Q ss_pred cEEEccCCcCC-ccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccC
Q 040184 228 EFLVLSENSLL-GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS 306 (699)
Q Consensus 228 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 306 (699)
+.+++..|++. ..+|..+-.+..|+.|||++|++. ..|..+...+++-.|+||+|+|..+....|.+++.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 88888888763 345566666777888888888777 5677777777777778887777755445566677777777777
Q ss_pred CcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCC-CCc
Q 040184 307 NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS-GYI 385 (699)
Q Consensus 307 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~ 385 (699)
|++. ..|..+..+..|++|++++|.+.... .. .+..+++|++|.+++.+-+ ..+
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-----------------------Lr-QLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ-----------------------LR-QLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHH-----------------------Hh-cCccchhhhhhhcccccchhhcC
Confidence 7776 44555566677777777777654210 00 1334556666777665433 245
Q ss_pred ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184 386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS 465 (699)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (699)
|..+..+.+|..++++.|.+. ..|+++-.+++|+.|++|+|+|+... .+.+.
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~-~~~~~-------------------------- 266 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN-MTEGE-------------------------- 266 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee-ccHHH--------------------------
Confidence 667777788888888888887 77788888888888888888876321 11111
Q ss_pred CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc-cCCccccCCCCC
Q 040184 466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG-VIPVTFSNLNQV 544 (699)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L 544 (699)
-.+|++|++|.|+++ .+|.+++.++.|+.|++.+|+++- =+|..++++.+|
T Consensus 267 ---------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 267 ---------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred ---------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 136777888888887 678888888888888888888752 367788888888
Q ss_pred CEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCC
Q 040184 545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL 608 (699)
Q Consensus 545 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 608 (699)
+++..++|.+. ..|+++..+..|+.|.|++|++. ..|+.+..++.+..+++..||-+-.+|-
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 88888888887 78888888888888888888876 4666666677888888888887775553
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=2.3e-27 Score=227.41 Aligned_cols=275 Identities=20% Similarity=0.180 Sum_probs=166.6
Q ss_pred CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccC-CcCCCccchHHhhcCCCCcEE
Q 040184 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSH-NQLTGEIPEHLAMSCFNLEFL 230 (699)
Q Consensus 152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 230 (699)
.-.+++|..|+|+ .+|...|+.+++|+.|||++|.|+.+.|++|.++++|.+|-+.+ |+|+ .+|...|.++.+++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4556777788887 78888888888888888888888888888888888877776665 7887 8888888888888888
Q ss_pred EccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCc------------CcCchhhhccCC
Q 040184 231 VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY------------GNIPAWLGNLSS 298 (699)
Q Consensus 231 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~ 298 (699)
.+.-|++.-...+.|..++++..|.+..|.+..+...+|..+..++.+.+..|.+- ...|..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 88888887777788888888888888888888554557888888888887777621 112222222222
Q ss_pred CcEEeccCCcccccCCccccC-CCCCcEEEcccccCcccCCC-CC-CCCCccEEEccCccccccCCcccccCCCCccEEE
Q 040184 299 LYDIMMASNHLQGPIPLEFCQ-LNYLQILDLSENNISGSLPS-CS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLD 375 (699)
Q Consensus 299 L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~i~~~~~~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 375 (699)
.....+.+.++..+.+..|.. +..+..--.+.+......|. ++ .+++|++|++++|++++.-+ ++|.+...+++|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-hhhcchhhhhhhh
Confidence 222223333332222211111 01111001111111111111 11 44555555555555543222 2355556666666
Q ss_pred CCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcc
Q 040184 376 LSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429 (699)
Q Consensus 376 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i 429 (699)
|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 666666555555556666666666666666655555666666666666655554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=4.4e-27 Score=225.49 Aligned_cols=302 Identities=21% Similarity=0.165 Sum_probs=231.5
Q ss_pred EEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccC-
Q 040184 156 LYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE- 234 (699)
Q Consensus 156 L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~- 234 (699)
.+.++-.++ ++|..+. +....++|..|+|+.+.+.+|+.+++|+.|||++|.|+ .|....|.++.++.+|.+.+
T Consensus 51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344455555 6787775 47889999999999999999999999999999999998 88888888999988877666
Q ss_pred CcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc---
Q 040184 235 NSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG--- 311 (699)
Q Consensus 235 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--- 311 (699)
|+|+......|+++..++.|.+.-|++.-...++|..++++..|.+.+|.+.......|..+..++.+.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 88988888899999999999999999998788899999999999999999885555588889999999999887431
Q ss_pred ---------cCCccccCCCCCcEEEcccccCcccCCCCCCCC--CccEEEccCccccccCCcccccCCCCccEEECCCCC
Q 040184 312 ---------PIPLEFCQLNYLQILDLSENNISGSLPSCSSHS--SITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380 (699)
Q Consensus 312 ---------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~ 380 (699)
..|..+++.....-..+.+.++....+..+.+. ++..-..+.+......|...|..+++|++|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 122233333333333344444443333333222 232222334445566777779999999999999999
Q ss_pred CCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCC------ccCCCCCCCCCcc
Q 040184 381 FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS------LHNNGDNDDSLVP 454 (699)
Q Consensus 381 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~------~~~~~~~~~~~~~ 454 (699)
++++-+.+|.+...+++|.|..|++.......|.++..|+.|++.+|+|+...|..|..+. +..++....+...
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 9999999999999999999999999977788899999999999999999998888877653 3344444555444
Q ss_pred cccccccc
Q 040184 455 AFNHNVRS 462 (699)
Q Consensus 455 ~~~~~~~~ 462 (699)
++...++.
T Consensus 366 wl~~Wlr~ 373 (498)
T KOG4237|consen 366 WLGEWLRK 373 (498)
T ss_pred HHHHHHhh
Confidence 44444333
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.9e-23 Score=243.38 Aligned_cols=309 Identities=22% Similarity=0.250 Sum_probs=188.2
Q ss_pred CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL 256 (699)
Q Consensus 177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 256 (699)
+|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++... ..+++|+.|+++++.....+|. +..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 4555555555554 344444 3455555555555554 444443 2455555555555443333332 445555566666
Q ss_pred cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc
Q 040184 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS 336 (699)
Q Consensus 257 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 336 (699)
++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......|.. .++|+.|++++|.+. .
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence 5554444455555556666666666554333444333 4556666666665443333322 245666666666654 3
Q ss_pred CCCCCCCCCccEEEccCccccc------cCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC
Q 040184 337 LPSCSSHSSITQVHLSKNMLYG------PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP 410 (699)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 410 (699)
+|....+++|+.|.+.++.... ......+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 4444455566666555432110 0111113345688999999887777788888999999999999886544666
Q ss_pred cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCC
Q 040184 411 IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKG 490 (699)
Q Consensus 411 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (699)
... .+++|+.|++++|.....+|.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~------------------------------------------------------- 843 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPD------------------------------------------------------- 843 (1153)
T ss_pred CCC-CccccCEEECCCCCccccccc-------------------------------------------------------
Confidence 555 688899999988865433332
Q ss_pred CCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCc
Q 040184 491 KPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNN 553 (699)
Q Consensus 491 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 553 (699)
...+++.|+|++|.++ .+|..+..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus 844 -~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 -ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 1247888999999988 678888899999999999855444577777888899999988884
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.9e-22 Score=238.44 Aligned_cols=341 Identities=20% Similarity=0.229 Sum_probs=225.6
Q ss_pred chhhhhcCCCCcEEeCcCCc------ccccCCccccCCC-CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCcc
Q 040184 168 PLEIGVYFPRLVYLNLSRND------FNGSIPSSIGDMN-SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ 240 (699)
Q Consensus 168 ~~~~~~~~~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 240 (699)
....+..+++|+.|.+..+. +....|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 34445556777777775443 2223455555553 5777777777776 666654 3667777777777764 3
Q ss_pred CcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCC
Q 040184 241 LFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQL 320 (699)
Q Consensus 241 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 320 (699)
++..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 455566777777777776654334443 6677777777777776555677777777777777777765444555544 56
Q ss_pred CCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCC-------CCcChhhhcCC
Q 040184 321 NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFS-------GYIPYWIERLT 393 (699)
Q Consensus 321 ~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~-------~~~~~~~~~l~ 393 (699)
++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|.. ..+++|..|++.++... ...+......+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccchhhhhccc
Confidence 77777777777654444432 356777777777763 33332 24566777766653321 11222233456
Q ss_pred CCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccc
Q 040184 394 YLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEK 473 (699)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (699)
+|+.|++++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 78888888887666777778888888888888776544444322
Q ss_pred cceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCc
Q 040184 474 EESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNN 553 (699)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 553 (699)
.+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|+
T Consensus 823 ------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 823 ------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 1457888899887655444443 367888999999888 567788888999999998854
Q ss_pred ccccCCcccccCCCCCeeecccCc
Q 040184 554 LNGKIPPQLVELNALAFFSVAHNN 577 (699)
Q Consensus 554 l~~~~p~~l~~l~~L~~L~l~~N~ 577 (699)
-...+|..+..+++|+.+++++|.
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCc
Confidence 333577777888888888888885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.5e-20 Score=204.21 Aligned_cols=263 Identities=21% Similarity=0.201 Sum_probs=160.9
Q ss_pred CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184 4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV 83 (699)
Q Consensus 4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L 83 (699)
-..|+++.+.++ .+|+ .+. ++|+.|++++|+++ .+|. .+++|++|++++|.++..+.. ..+|++|
T Consensus 203 ~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l------p~sL~~L 267 (788)
T PRK15387 203 NAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL------PPGLLEL 267 (788)
T ss_pred CcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc------cccccee
Confidence 457888888888 7887 443 47888899888887 5653 257788888888877654311 1267788
Q ss_pred EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC
Q 040184 84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF 163 (699)
Q Consensus 84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i 163 (699)
++++|.++.. |.. .++|+.|++++|.++ .+|. ..++|+.|++++|.+.+. |.. ..+|+.|++++|++
T Consensus 268 ~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLTHL-PAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchhhh-hhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CCC---cccccccccccCcc
Confidence 8888777543 322 246777778887776 5553 236777777777777653 221 23566677777777
Q ss_pred CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcc
Q 040184 164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS 243 (699)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 243 (699)
+ .+|. ..++|++|+|++|+++. +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.+.+ +|.
T Consensus 335 ~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~ 399 (788)
T PRK15387 335 T-SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPV 399 (788)
T ss_pred c-cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCC
Confidence 6 4553 12367777777777763 4432 245666777777776 55532 2456666666666653 232
Q ss_pred cccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccc
Q 040184 244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEF 317 (699)
Q Consensus 244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 317 (699)
. .++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|.+.+..+..+
T Consensus 400 l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 L---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 2456666666666653 3432 234555666666665 455555666666666666666655444433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.4e-20 Score=203.14 Aligned_cols=112 Identities=28% Similarity=0.396 Sum_probs=52.3
Q ss_pred CEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCC
Q 040184 203 EALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSD 282 (699)
Q Consensus 203 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 282 (699)
..|+++++.++ .+|..+. ++|+.|++++|+++. +|. .+++|++|++++|+++. +|.. .++|+.|++++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 34555555554 4444332 244555555554442 222 13455555555555552 2321 23555555555
Q ss_pred CcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184 283 NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334 (699)
Q Consensus 283 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 334 (699)
|.+.. +|..+ ++|+.|++++|++.. +|. ..++|+.|++++|++.
T Consensus 272 N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 272 NPLTH-LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred Cchhh-hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCccc
Confidence 55542 22211 345555555555552 232 1245666666666555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.6e-18 Score=189.87 Aligned_cols=245 Identities=23% Similarity=0.319 Sum_probs=115.2
Q ss_pred CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184 4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV 83 (699)
Q Consensus 4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L 83 (699)
...|++++++++ .+|. .+ .++|+.|+|++|.++ .+|... .++|+.|++++|.+...
T Consensus 180 ~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~LtsL---------------- 235 (754)
T PRK15370 180 KTELRLKILGLT-TIPA-CI--PEQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLTSI---------------- 235 (754)
T ss_pred ceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccccC----------------
Confidence 445666666555 4544 22 235666666666655 344321 13455555555544322
Q ss_pred EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC
Q 040184 84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF 163 (699)
Q Consensus 84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i 163 (699)
|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|++
T Consensus 236 -----------P~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 236 -----------PATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred -----------Chhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcc
Confidence 22221 23445555555444 4444331 345555555554442 232221 2455555555555
Q ss_pred CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcc
Q 040184 164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFS 243 (699)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 243 (699)
+ .+|..+. +.|+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+ .++|+.|++++|++.. +|.
T Consensus 296 t-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~-LP~ 363 (754)
T PRK15370 296 R-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITV-LPE 363 (754)
T ss_pred c-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCc-CCh
Confidence 4 3443322 245555555555542 33322 135555555555555 455433 2455555555555542 333
Q ss_pred cccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchh----hhccCCCcEEeccCCccc
Q 040184 244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAW----LGNLSSLYDIMMASNHLQ 310 (699)
Q Consensus 244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~~ 310 (699)
.+ .++|++|++++|.++ .+|..+. ..|+.|++++|++. .+|.. +..++.+..+++.+|.+.
T Consensus 364 ~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 364 TL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 22 245666666666655 2333332 24566666666655 23332 223355666666666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.5e-18 Score=188.81 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=5.8
Q ss_pred CCCEEEccCCcCC
Q 040184 201 SLEALDLSHNQLT 213 (699)
Q Consensus 201 ~L~~L~L~~n~l~ 213 (699)
+|+.|++++|.++
T Consensus 221 nL~~L~Ls~N~Lt 233 (754)
T PRK15370 221 NIKTLYANSNQLT 233 (754)
T ss_pred CCCEEECCCCccc
Confidence 4444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=3.1e-19 Score=183.98 Aligned_cols=59 Identities=27% Similarity=0.170 Sum_probs=29.2
Q ss_pred EEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCcc----CcccccCCCCCcEEEccCCcCC
Q 040184 204 ALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ----LFSKKNYLRKLVSLHLDANYFT 262 (699)
Q Consensus 204 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~ 262 (699)
.|+|..+.+++.-....+..+..|+.++++++.+... ++..+...+++++++++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 3555566555333333334455666666666665321 2233334445555555555443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=3.9e-18 Score=175.76 Aligned_cols=276 Identities=22% Similarity=0.220 Sum_probs=132.0
Q ss_pred EEeCCCCCCCC-CCCcccccCCCCCCEEeCCCCccccc----CCcccccCCCCCcEEEcccCcccccccc----ccCCCC
Q 040184 6 VLSLDLNQLTG-NISSSPLIHLTSIERLFLSYNQFQIP----FSLEPFFNNSKLKVFSGECNEIFVESES----SHSMTP 76 (699)
Q Consensus 6 ~L~ls~n~l~~-~i~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~~ 76 (699)
.|+|.++.+++ .... .|..++.|++|+++++.++.. ++ ..+...++|+.++++++.+...... ...+..
T Consensus 2 ~l~L~~~~l~~~~~~~-~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATE-LLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHH-HHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 46788888874 3443 566778888888888887531 11 2344566777777777655420000 001112
Q ss_pred CccccEEEccCCcCccccchhcCCCCC---CCEEEcccCccccccchhh---hhCC-CCCCEEEcCCCcCccc----CCC
Q 040184 77 KFQLESVALSGSGIHATFPKFLYNQHD---LEYVDFSDSNLKGEFLNWL---LENN-TNLNTLVLRNNSLSGP----FRM 145 (699)
Q Consensus 77 ~~~L~~L~ls~~~i~~~~~~~l~~~~~---L~~L~ls~n~~~~~~~~~~---~~~l-~~L~~L~Ls~n~i~~~----~~~ 145 (699)
+.+|++|++++|.+....+..+..+.+ |+.|++++|.+.+.....+ +..+ ++|+.|++++|.+++. ...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 335555555555554333333333222 5555555555442111110 1233 4445555555544421 111
Q ss_pred CCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCCCccchH--
Q 040184 146 PIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEH-- 219 (699)
Q Consensus 146 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 219 (699)
.+..++ +|++|++++|.+++ .++..+..+++|+.|++++|.+++.....
T Consensus 160 ~~~~~~-------------------------~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 160 ALRANR-------------------------DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred HHHhCC-------------------------CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 223333 45555555555442 11222333445555555555544221111
Q ss_pred -HhhcCCCCcEEEccCCcCCccCcccc-----cCCCCCcEEEccCCcCCc----cCCccCcCCCCCceEECCCCcCcCc-
Q 040184 220 -LAMSCFNLEFLVLSENSLLGQLFSKK-----NYLRKLVSLHLDANYFTG----EIPKSLSNCSHLEGLYMSDNNLYGN- 288 (699)
Q Consensus 220 -~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~- 288 (699)
.+..+++|++|++++|.+.+.....+ ...+.|++|++++|.++. .+...+..+++|+.+++++|.+...
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 11234455555555555443111111 123566666666666641 1223445556777777777777643
Q ss_pred ---Cchhhhcc-CCCcEEeccCCc
Q 040184 289 ---IPAWLGNL-SSLYDIMMASNH 308 (699)
Q Consensus 289 ---~~~~~~~l-~~L~~L~l~~n~ 308 (699)
....+... +.|+.+++.+|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCCCC
Confidence 22223333 566777766654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-18 Score=147.77 Aligned_cols=185 Identities=27% Similarity=0.371 Sum_probs=133.6
Q ss_pred CCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCC
Q 040184 337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416 (699)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 416 (699)
++..+.+..++.|.+++|+++.. +.. ++.+.+|+.|++++|+|+ ..|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~v-ppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVV-PPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cccccchhhhhhhhcccCceeec-CCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 34445556666666777766433 333 667777888888888877 46667788888888888888876 677788888
Q ss_pred CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcc
Q 040184 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM 496 (699)
Q Consensus 417 ~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 496 (699)
|.|+.||+++|.+..
T Consensus 102 p~levldltynnl~e----------------------------------------------------------------- 116 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNE----------------------------------------------------------------- 116 (264)
T ss_pred chhhhhhcccccccc-----------------------------------------------------------------
Confidence 888888887777642
Q ss_pred cEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccC
Q 040184 497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576 (699)
Q Consensus 497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 576 (699)
...|..|-.++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..+..++.|++|.+.+|
T Consensus 117 -----------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 117 -----------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred -----------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 135666667778888888888887 67777888888888888888887 77888888888888888888
Q ss_pred cCcccCCCCCcCCC---CCCCCccCCCCCCC
Q 040184 577 NLSGKIPEWTAQFT---TFKEDSYEGNPLLC 604 (699)
Q Consensus 577 ~l~~~~~~~~~~~~---~l~~~~~~~Np~~C 604 (699)
+++...|+ ++.+. .-+....+.|||.-
T Consensus 184 rl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 184 RLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 88876665 33332 22345567777765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-16 Score=136.64 Aligned_cols=155 Identities=30% Similarity=0.478 Sum_probs=72.7
Q ss_pred CCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEE
Q 040184 126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL 205 (699)
Q Consensus 126 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 205 (699)
++..+.|.||+|+++. .|..+..+.+|+.|++++|++. .+|.++.+ +++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444444445544443 2333444444444444444444 34444443 344444444444443 344444444444444
Q ss_pred EccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcC
Q 040184 206 DLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285 (699)
Q Consensus 206 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 285 (699)
|+.+|.+.. ...|..|-.+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+
T Consensus 108 dltynnl~e------------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNE------------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hcccccccc------------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 444444331 123444444445555555555554 4444555555555555555554
Q ss_pred cCcCchhhhccCCCcEEeccCCccc
Q 040184 286 YGNIPAWLGNLSSLYDIMMASNHLQ 310 (699)
Q Consensus 286 ~~~~~~~~~~l~~L~~L~l~~n~~~ 310 (699)
- ..|..++.++.|++|.+.+|+++
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee
Confidence 4 34455555555555555555554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=2.8e-14 Score=157.67 Aligned_cols=118 Identities=35% Similarity=0.587 Sum_probs=107.2
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 574 (699)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCCcCC-CCCCCCccCCCCCCCCCCC-CCCC
Q 040184 575 HNNLSGKIPEWTAQF-TTFKEDSYEGNPLLCGKPL-PDCD 612 (699)
Q Consensus 575 ~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~-~~c~ 612 (699)
+|++++.+|..+... ..+..+++.+|+.+|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 4556788999999998653 3464
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-12 Score=128.17 Aligned_cols=188 Identities=17% Similarity=0.094 Sum_probs=116.6
Q ss_pred CCCCCCEEeCCCCcccccCCc-ccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchh-cCCCC
Q 040184 25 HLTSIERLFLSYNQFQIPFSL-EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKF-LYNQH 102 (699)
Q Consensus 25 ~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~-l~~~~ 102 (699)
++++|+++.|.++.+. ..+. +....|++++.|||+.|-++...........+++|+.|+++.|.+....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5677788888777765 2221 3455677888888887766554433333345557888888877764322211 12567
Q ss_pred CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182 (699)
Q Consensus 103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 182 (699)
+|++|.+++|.++..-..++...+|+|+.|.|..|............+..|++|||++|++...-.......+|.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888886666666678888888888888644444445556677888888887765322112222367777777
Q ss_pred CcCCcccccC-Ccc-----ccCCCCCCEEEccCCcCC
Q 040184 183 LSRNDFNGSI-PSS-----IGDMNSLEALDLSHNQLT 213 (699)
Q Consensus 183 L~~n~i~~~~-~~~-----~~~l~~L~~L~L~~n~l~ 213 (699)
++.+++..+. |+. ...+++|++|++..|++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 7777776431 221 133455666666666554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=5.3e-13 Score=135.27 Aligned_cols=175 Identities=28% Similarity=0.407 Sum_probs=121.5
Q ss_pred CCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEE
Q 040184 343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLI 422 (699)
Q Consensus 343 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 422 (699)
+..-...+++.|++. .++.. +..+..|+.+.+..|.+. .+|..+..+..|++++|+.|++. ..|..++.++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344445566667663 34443 556666777777777776 56677777777777777777776 5666666665 7777
Q ss_pred ECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEcc
Q 040184 423 DLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLS 502 (699)
Q Consensus 423 ~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 502 (699)
.+++|+++ .+|..++. ...|..||.+
T Consensus 149 i~sNNkl~-~lp~~ig~-----------------------------------------------------~~tl~~ld~s 174 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGL-----------------------------------------------------LPTLAHLDVS 174 (722)
T ss_pred EEecCccc-cCCccccc-----------------------------------------------------chhHHHhhhh
Confidence 77777775 44443331 2467778888
Q ss_pred CCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184 503 CNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580 (699)
Q Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 580 (699)
.|.+. .+|..++.+.+|+.|++..|++. -.|..+..|+ |..||+|+|+++ .+|-.|.+|..|++|-|.+|+|..
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 88877 56777888888888888888887 3445555554 777888888887 777788888888888888888763
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=5.3e-12 Score=118.03 Aligned_cols=87 Identities=26% Similarity=0.329 Sum_probs=62.9
Q ss_pred CCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccC-CcccccCCCCCee
Q 040184 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI-PPQLVELNALAFF 571 (699)
Q Consensus 493 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 571 (699)
+++|+.||||+|.++ .+.++-..+.+.++|.|++|.+.+. ..++++-+|..||+++|+|.... -..+.++|-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 346666666666665 3444455677888888888888744 56778888888899988887422 2467888889999
Q ss_pred ecccCcCcccC
Q 040184 572 SVAHNNLSGKI 582 (699)
Q Consensus 572 ~l~~N~l~~~~ 582 (699)
.+.+|++.+..
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 99999887643
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=8.5e-11 Score=130.20 Aligned_cols=114 Identities=29% Similarity=0.493 Sum_probs=101.0
Q ss_pred CCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCccc
Q 040184 418 QLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMY 497 (699)
Q Consensus 418 ~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 497 (699)
.++.|+|++|.+.+.+|..+.. +++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-----------------------------------------------------L~~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-----------------------------------------------------LRHLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-----------------------------------------------------CCCCC
Confidence 3778999999999888876654 35899
Q ss_pred EEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC-CCCCeeecccC
Q 040184 498 GVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL-NALAFFSVAHN 576 (699)
Q Consensus 498 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N 576 (699)
.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+... ..+..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 46788999999
Q ss_pred cCcccCCC
Q 040184 577 NLSGKIPE 584 (699)
Q Consensus 577 ~l~~~~~~ 584 (699)
+..|..|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 87665543
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.5e-12 Score=132.13 Aligned_cols=195 Identities=26% Similarity=0.420 Sum_probs=137.6
Q ss_pred CCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEE
Q 040184 319 QLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYL 398 (699)
Q Consensus 319 ~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 398 (699)
.+..-...|++.|++......+-.+..|+.+.+..|.+. .++.. ...+..|+.++++.|++. ..|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 445556778888888744333346677777778777773 34433 677788888888888887 4566666554 8888
Q ss_pred EcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeE
Q 040184 399 ILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIM 478 (699)
Q Consensus 399 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (699)
.+++|+++ .+|+.++..+.|..||.+.|.+.. +|..+..
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~--------------------------------------- 187 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY--------------------------------------- 187 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhh---------------------------------------
Confidence 88888887 677777788888888888888753 3333332
Q ss_pred EeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 040184 479 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKI 558 (699)
Q Consensus 479 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (699)
+.+|+.|++..|.+.. .|+.+..|+ |..||+|.|+++ .+|-.|.+|+.|++|-|.+|.+. ..
T Consensus 188 --------------l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP 249 (722)
T KOG0532|consen 188 --------------LTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP 249 (722)
T ss_pred --------------HHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence 3477778888888874 556666554 788888888888 67888888888888888888887 56
Q ss_pred Cccccc---CCCCCeeecccC
Q 040184 559 PPQLVE---LNALAFFSVAHN 576 (699)
Q Consensus 559 p~~l~~---l~~L~~L~l~~N 576 (699)
|..+.. ..-.++|+..-+
T Consensus 250 PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 250 PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hHHHHhccceeeeeeecchhc
Confidence 655542 334566666666
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-11 Score=122.40 Aligned_cols=163 Identities=22% Similarity=0.201 Sum_probs=78.5
Q ss_pred hCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCEEEccCccCCccC-chhhhhcCCCCcEEeCcCCcccccCCcc-ccCCC
Q 040184 124 ENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLYVSKNFFQGNI-PLEIGVYFPRLVYLNLSRNDFNGSIPSS-IGDMN 200 (699)
Q Consensus 124 ~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~ 200 (699)
.++.+|+...|.++.+..... .....|++++.|||++|-+..-. -..+...+|+|+.|+|+.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345566666666665543221 23455666666666666554211 1234444666666666666654211111 11345
Q ss_pred CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccC-CccCcCCCCCceEE
Q 040184 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEI-PKSLSNCSHLEGLY 279 (699)
Q Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~ 279 (699)
+|+.|.++.|.++..--......+|+|+.|++..|............+..|++|||++|.+.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 56666666665553222223334566666666655322222222333455555555555544211 02234445555555
Q ss_pred CCCCcCc
Q 040184 280 MSDNNLY 286 (699)
Q Consensus 280 l~~n~l~ 286 (699)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 5555443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1.8e-11 Score=117.35 Aligned_cols=112 Identities=27% Similarity=0.248 Sum_probs=58.9
Q ss_pred cCCCCcEEEccCCcCCc----cCcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcCcCchhh-
Q 040184 223 SCFNLEFLVLSENSLLG----QLFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYGNIPAWL- 293 (699)
Q Consensus 223 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 293 (699)
..+.|+.+.++.|.|.. .....+..++.|+.|||..|.++.. +..+++.+++|+.|++++|.+.......|
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 34445555555444421 1223445556666666666655421 23445556666666666666654433322
Q ss_pred ----hccCCCcEEeccCCccccc----CCccccCCCCCcEEEcccccCc
Q 040184 294 ----GNLSSLYDIMMASNHLQGP----IPLEFCQLNYLQILDLSENNIS 334 (699)
Q Consensus 294 ----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~ 334 (699)
...++|+.|.+.+|.++.. +..+....+.|..|++++|++.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1245667777777665532 1122334667777777777763
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=2.1e-11 Score=116.92 Aligned_cols=118 Identities=25% Similarity=0.254 Sum_probs=65.9
Q ss_pred hhcCCCCCCCEEEcccCccccccch---hhhhCCCCCCEEEcCCCcCcccCC-------------CCCCCCCCCCEEEcc
Q 040184 96 KFLYNQHDLEYVDFSDSNLKGEFLN---WLLENNTNLNTLVLRNNSLSGPFR-------------MPIQPHWHLDTLYVS 159 (699)
Q Consensus 96 ~~l~~~~~L~~L~ls~n~~~~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~-------------~~~~~l~~L~~L~l~ 159 (699)
.++..+++|++|+||.|.+....+. .++..+..|++|.|.+|.+.-..- .....-+.|+++..+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3455677888888888877644433 234667788888888876642111 112233456666666
Q ss_pred CccCCccC---chhhhhcCCCCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCC
Q 040184 160 KNFFQGNI---PLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLT 213 (699)
Q Consensus 160 ~n~i~~~~---~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~ 213 (699)
+|++...- -+..++..+.|+.+.++.|.|.. .....+..+++|++|||.+|.++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 66654211 12233444566666666666542 12234555666666666666554
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.4e-10 Score=104.69 Aligned_cols=109 Identities=28% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCc
Q 040184 149 PHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLE 228 (699)
Q Consensus 149 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 228 (699)
+..++++|+|++|.|+ .+ ..+...+.+|+.|++++|.|+.. +.+..++.|++|++++|.++ .+++.+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3445566666666654 22 23333345677777777777643 24566777777777777776 55544433466777
Q ss_pred EEEccCCcCCcc-CcccccCCCCCcEEEccCCcCC
Q 040184 229 FLVLSENSLLGQ-LFSKKNYLRKLVSLHLDANYFT 262 (699)
Q Consensus 229 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~ 262 (699)
+|++++|.+... ....+..+++|+.|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777766431 1133344555555555555554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.3e-10 Score=120.10 Aligned_cols=176 Identities=35% Similarity=0.496 Sum_probs=82.6
Q ss_pred CCCCEEEccCccCCccCchhhhhcCC-CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184 151 WHLDTLYVSKNFFQGNIPLEIGVYFP-RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229 (699)
Q Consensus 151 ~~L~~L~l~~n~i~~~~~~~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 229 (699)
+.++.|++.+|.++ .++..... .. +|+.|++++|.+. .+|..++.++.|+.|++++|++. .+|.... ..++|+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred cceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 44444444444444 33333322 21 4555555555554 23334445555555555555554 4444331 2445555
Q ss_pred EEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309 (699)
Q Consensus 230 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 309 (699)
|++++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..++.+++++.|++++|.+
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccc
Confidence 555555543 22222223334555555555322 233445555555555555555442 234445555555555555555
Q ss_pred cccCCccccCCCCCcEEEcccccCccc
Q 040184 310 QGPIPLEFCQLNYLQILDLSENNISGS 336 (699)
Q Consensus 310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~ 336 (699)
..... +..+.+++.+++++|.+...
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccc--ccccCccCEEeccCcccccc
Confidence 53222 45555556666665555533
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=5.7e-10 Score=118.29 Aligned_cols=84 Identities=38% Similarity=0.524 Sum_probs=39.1
Q ss_pred CCCCcEEEccCCcCCccCCccCcCCC-CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184 248 LRKLVSLHLDANYFTGEIPKSLSNCS-HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326 (699)
Q Consensus 248 l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 326 (699)
++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|++. .+|......+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 345555555555555 2333333332 5555555555554 23233444555555555555554 222222244444445
Q ss_pred EcccccCc
Q 040184 327 DLSENNIS 334 (699)
Q Consensus 327 ~l~~n~i~ 334 (699)
++++|++.
T Consensus 192 ~ls~N~i~ 199 (394)
T COG4886 192 DLSGNKIS 199 (394)
T ss_pred eccCCccc
Confidence 55544444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=1.3e-10 Score=104.94 Aligned_cols=107 Identities=24% Similarity=0.368 Sum_probs=41.0
Q ss_pred CCCcccEEEccCCccCccCCcccc-ccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCccc-ccCCCCC
Q 040184 492 PLNKMYGVDLSCNKLTGEIPPQIS-KLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQL-VELNALA 569 (699)
Q Consensus 492 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~ 569 (699)
.+.++++|+|++|.|+.. +.++ .+.+|+.|+|++|.|+.+ +.+..++.|++|++++|+|+. +++.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 345789999999999843 3455 588999999999999965 468889999999999999994 44444 4689999
Q ss_pred eeecccCcCcccCC-CCCcCCCCCCCCccCCCCCC
Q 040184 570 FFSVAHNNLSGKIP-EWTAQFTTFKEDSYEGNPLL 603 (699)
Q Consensus 570 ~L~l~~N~l~~~~~-~~~~~~~~l~~~~~~~Np~~ 603 (699)
.|++++|++..... ..+..++.|+.+++.|||..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999999975422 23345788899999999983
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=6.6e-10 Score=82.34 Aligned_cols=59 Identities=39% Similarity=0.639 Sum_probs=29.9
Q ss_pred ccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCc
Q 040184 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNN 577 (699)
Q Consensus 519 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 577 (699)
+|++|++++|+++.+.++.|.++++|++|++++|+++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44455555555554444455555555555555555554444455555555555555554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=3.2e-10 Score=106.31 Aligned_cols=130 Identities=26% Similarity=0.294 Sum_probs=85.9
Q ss_pred CCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEE
Q 040184 271 NCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQV 349 (699)
Q Consensus 271 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L 349 (699)
..+.|+++|+++|.|+ .+.++..-.+.++.|+++.|.+... ..+..+++|+.||+++|.++. ...+. .+-+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence 3456677777777766 4455556667777777777776632 236667777777777777663 22322 56677777
Q ss_pred EccCccccccCCcccccCCCCccEEECCCCCCCCCc-ChhhhcCCCCCEEEcccCcCCC
Q 040184 350 HLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI-PYWIERLTYLRYLILANNNLEG 407 (699)
Q Consensus 350 ~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~ 407 (699)
.+++|.+.... + +..+-+|..||+++|+|.... ...++++|.|+.+.|.+|.+.+
T Consensus 358 ~La~N~iE~LS--G-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETLS--G-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhhh--h-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 77777764321 1 556677888888888886432 3456778888888888888874
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1e-09 Score=81.37 Aligned_cols=61 Identities=46% Similarity=0.617 Sum_probs=57.8
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 554 (699)
++|+.|++++|+++...+..|..+++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988888999999999999999999999999999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=2.6e-10 Score=120.93 Aligned_cols=224 Identities=24% Similarity=0.249 Sum_probs=122.0
Q ss_pred hccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccE
Q 040184 294 GNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVT 373 (699)
Q Consensus 294 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 373 (699)
..+++|+.|++.+|.+... ...+..+++|++|++++|.|+ .+.....+..|+.|++.+|.+..... +..+..|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNLISDISG---LESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccchhhccchhhheeccCcchhccC---Cccchhhhc
Confidence 3344444444444444422 111344555555555555554 22222233335555555555533221 444666777
Q ss_pred EECCCCCCCCCcC-hhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184 374 LDLSYNSFSGYIP-YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL 452 (699)
Q Consensus 374 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (699)
+++++|++....+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..-+-
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l----------------- 226 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL----------------- 226 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc-----------------
Confidence 7777777765443 2 45666777777777776522 2233344444446666665422110
Q ss_pred cccccccccccccCCCCcccccceeEEeecceeeeeCCCCCC--cccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184 453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLN--KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL 530 (699)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 530 (699)
..+. .|+.+++++|++. ..+..+..+..+..|++++|++
T Consensus 227 --------------------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 227 --------------------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred --------------------------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhccc
Confidence 0011 2677777777776 3335567777788888888877
Q ss_pred cccCCccccCCCCCCEEeCCCCcccc---cCCc-ccccCCCCCeeecccCcCcccCC
Q 040184 531 TGVIPVTFSNLNQVESLDISYNNLNG---KIPP-QLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~p~-~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
... ..+...+.+..+....|.+.. .... .....+.++.+++.+|+.....+
T Consensus 268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 644 345556667777777777652 1111 14556777777787777765444
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=6.8e-10 Score=117.75 Aligned_cols=243 Identities=27% Similarity=0.257 Sum_probs=148.9
Q ss_pred ccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEE
Q 040184 295 NLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTL 374 (699)
Q Consensus 295 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 374 (699)
.+..++.+.+..|.+.. +-..+..+++|+.+++..|.|.........+++|+.|++++|.|....+ +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhh
Confidence 44556666677777663 3344677888999999999888544334467777778888777755433 4455567777
Q ss_pred ECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCc
Q 040184 375 DLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLV 453 (699)
Q Consensus 375 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~ 453 (699)
++++|.|... ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+..... +
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~---------------- 204 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--L---------------- 204 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--h----------------
Confidence 7777777643 234446777777777777764333 1 3556677777777777642111 0
Q ss_pred ccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCc--cCeEEccCCcCc
Q 040184 454 PAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTR--IRALNLSHNNLT 531 (699)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~ 531 (699)
..+..+..+++..|.++... .+..+.. |+.+++++|++.
T Consensus 205 -------------------------------------~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 205 -------------------------------------DLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred -------------------------------------HHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc
Confidence 01224444567777776322 2222333 788888888887
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc---CCCC-CcCCCCCCCCccCCCCCCC
Q 040184 532 GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK---IPEW-TAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 532 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~---~~~~-~~~~~~l~~~~~~~Np~~C 604 (699)
..+..+..+..+..|+++.|++... ..+...+.+..+....|++... .+.. ......++...+.+||..-
T Consensus 246 -~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 246 -RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred -cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 3335667778888888888888743 3345566677777777776532 1110 1234455666666666543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=6.7e-09 Score=117.64 Aligned_cols=128 Identities=28% Similarity=0.258 Sum_probs=81.9
Q ss_pred CCcEEeCcCCcccccCCccccCCCCCCEEEccCCc--CCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEE
Q 040184 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ--LTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL 254 (699)
Q Consensus 177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 254 (699)
..+.+.+.+|.+. .++... .++.|++|-+..|. +. .++..+|..++.|++||+++|.-.+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4566666666654 233322 33467777777765 44 6666666667777777777766656677777777777777
Q ss_pred EccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCc
Q 040184 255 HLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH 308 (699)
Q Consensus 255 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 308 (699)
+++++.+. .+|..+.++..|.+|++..+......+.....+++|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777776 567777777777777777665443445555557777777765543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=1e-08 Score=116.11 Aligned_cols=127 Identities=23% Similarity=0.267 Sum_probs=68.8
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCc--cccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEE
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN--LKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 156 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~--~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 156 (699)
..+.+.+-+|.+... +.. .+++.|++|-+..|. +. .++..+|..++.|++|||++|.--+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 345555555544322 111 133456666666554 22 4444445566666666666654444556666666666666
Q ss_pred EccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCC
Q 040184 157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHN 210 (699)
Q Consensus 157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 210 (699)
+++++.+. .+|.++.. +..|.+|++..+.-...+|.....+++|++|.+...
T Consensus 601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 66666665 56666655 456666666655543344444555666666666543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=1.1e-09 Score=114.53 Aligned_cols=108 Identities=25% Similarity=0.314 Sum_probs=70.8
Q ss_pred CCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS 572 (699)
Q Consensus 493 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 572 (699)
++.++.|||++|+++.. ..+..++.|++|||++|.+..+.--....+. |+.|.+++|.++.. ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 45677777777777743 2677777888888888877744333334444 77888888877632 3567777788888
Q ss_pred cccCcCcccCCCCC-cCCCCCCCCccCCCCCCCC
Q 040184 573 VAHNNLSGKIPEWT-AQFTTFKEDSYEGNPLLCG 605 (699)
Q Consensus 573 l~~N~l~~~~~~~~-~~~~~l~~~~~~~Np~~C~ 605 (699)
+++|-|++.-.-.+ ..+..|+.+.++|||.-|.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 88887765433211 1245566777888887774
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.2e-09 Score=99.74 Aligned_cols=177 Identities=22% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCCEEEcCCCcCcc-cCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCc-ccc-cCCccccCCCCCCE
Q 040184 128 NLNTLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRND-FNG-SIPSSIGDMNSLEA 204 (699)
Q Consensus 128 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~-~~~~~~~~l~~L~~ 204 (699)
.||++|||+..++. .....++.|.+|+.|.+.++++.+.+...+.+ -.+|+.|+|+.+. ++. ...-.+..|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35555555544431 12222344455555555555555444444444 2355555555443 211 01112344555555
Q ss_pred EEccCCcCCCccchH-HhhcCCCCcEEEccCCcC---CccCcccccCCCCCcEEEccCCc-CCccCCccCcCCCCCceEE
Q 040184 205 LDLSHNQLTGEIPEH-LAMSCFNLEFLVLSENSL---LGQLFSKKNYLRKLVSLHLDANY-FTGEIPKSLSNCSHLEGLY 279 (699)
Q Consensus 205 L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~ 279 (699)
|++++|.+....-.. +..--++|+.|+++++.- ...+..-...+++|.+|||+++. ++......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 555555443222111 111123455555555421 01111122345566666665543 2222223345556666666
Q ss_pred CCCCcCcCcCchh---hhccCCCcEEeccCC
Q 040184 280 MSDNNLYGNIPAW---LGNLSSLYDIMMASN 307 (699)
Q Consensus 280 l~~n~l~~~~~~~---~~~l~~L~~L~l~~n 307 (699)
++.|.. ..|.. +...++|..|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 666532 33332 344556666666554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5.5e-09 Score=98.14 Aligned_cols=178 Identities=21% Similarity=0.171 Sum_probs=116.5
Q ss_pred CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCc-CCCccchHHhhcCCCCcEE
Q 040184 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQ-LTGEIPEHLAMSCFNLEFL 230 (699)
Q Consensus 152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L 230 (699)
.|+.+||++..++..--..+.+.|.+|+.|.|.++++.+.+...++.-..|+.|+++.+. ++..--..++.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588899998888755556666778889999999999888777788888899999998764 4423344556788899999
Q ss_pred EccCCcCCccCccc-c-cCCCCCcEEEccCCcCC---ccCCccCcCCCCCceEECCCCc-CcCcCchhhhccCCCcEEec
Q 040184 231 VLSENSLLGQLFSK-K-NYLRKLVSLHLDANYFT---GEIPKSLSNCSHLEGLYMSDNN-LYGNIPAWLGNLSSLYDIMM 304 (699)
Q Consensus 231 ~L~~n~l~~~~~~~-~-~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 304 (699)
++++|.+....... + .--++|+.|+++++.-. ..+..-.+.+++|..|||++|. ++......|.+++-|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 99998765322111 1 11356777777775421 1111223567778888887764 33323334556677777777
Q ss_pred cCCcccccCCcc---ccCCCCCcEEEcccc
Q 040184 305 ASNHLQGPIPLE---FCQLNYLQILDLSEN 331 (699)
Q Consensus 305 ~~n~~~~~~~~~---~~~l~~L~~L~l~~n 331 (699)
+.|.. ++|.. +...|.|.+||+.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77643 33433 345566777776654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=8.3e-08 Score=90.39 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=57.7
Q ss_pred CCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc-ChhhhcCCCCCEEEcccCcCCCCCCc------ccCC
Q 040184 343 HSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI-PYWIERLTYLRYLILANNNLEGEVPI------QLCR 415 (699)
Q Consensus 343 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~ 415 (699)
++++..+.+..|.+........+..++.+..|+|+.++|.+.. .+++.+++.|..|.++++.+....-. .+++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 4566777777777766555555667778888889988887643 45678888999999998887633221 2456
Q ss_pred CCCCCEEECc
Q 040184 416 LKQLRLIDLS 425 (699)
Q Consensus 416 l~~L~~L~ls 425 (699)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7777777544
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=8.7e-08 Score=89.07 Aligned_cols=243 Identities=25% Similarity=0.229 Sum_probs=111.6
Q ss_pred cccEEEccCCcCccccc----hhcCCCCCCCEEEcccCcc---ccccchh------hhhCCCCCCEEEcCCCcCcccCCC
Q 040184 79 QLESVALSGSGIHATFP----KFLYNQHDLEYVDFSDSNL---KGEFLNW------LLENNTNLNTLVLRNNSLSGPFRM 145 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~----~~l~~~~~L~~L~ls~n~~---~~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~ 145 (699)
.++.++||+|.|...-. ..+.+-.+|+..+++.-.. .+++++. .+.+||+|+..+||.|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 45555555555543322 2233445566655554221 1222221 124566666666666665544333
Q ss_pred C----CCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchH--
Q 040184 146 P----IQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEH-- 219 (699)
Q Consensus 146 ~----~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 219 (699)
. ++..+.|.+|.+++|.+....-..+++.+.+ |..|+ -.++-|.|++.....|++. ..+..
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~-----la~nK-------Kaa~kp~Le~vicgrNRle-ngs~~~~ 177 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH-----LAYNK-------KAADKPKLEVVICGRNRLE-NGSKELS 177 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH-----HHHHh-------hhccCCCceEEEeccchhc-cCcHHHH
Confidence 2 3444556666666665431111112211000 00111 1123345555555555554 22221
Q ss_pred --HhhcCCCCcEEEccCCcCCcc-----CcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcCc
Q 040184 220 --LAMSCFNLEFLVLSENSLLGQ-----LFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYGN 288 (699)
Q Consensus 220 --~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 288 (699)
.+..-..|+++.+..|.|... ....+..+++|+.||++.|.++.. +..++...+.|+.|.+.+|-++..
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 112223555666655554321 112234456677777777766532 224455666677777777766543
Q ss_pred Cchhh----h--ccCCCcEEeccCCcccccCCcc-------ccCCCCCcEEEcccccCc
Q 040184 289 IPAWL----G--NLSSLYDIMMASNHLQGPIPLE-------FCQLNYLQILDLSENNIS 334 (699)
Q Consensus 289 ~~~~~----~--~l~~L~~L~l~~n~~~~~~~~~-------~~~l~~L~~L~l~~n~i~ 334 (699)
....+ . ..++|..|...+|...+.+... -..+|-|..+.+.+|++.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 33222 1 1356666666666554322111 123455555666666655
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=5.6e-09 Score=109.39 Aligned_cols=127 Identities=28% Similarity=0.232 Sum_probs=83.4
Q ss_pred CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182 (699)
Q Consensus 103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 182 (699)
.|.+.+++.|.+. .+-.+ +.-++.|+.|+|++|++... +.+..+++|++|||+.|.+. .+|.--...+ +|+.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 4667777777765 23233 35667788888888877753 25777778888888888776 4553332324 588888
Q ss_pred CcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcC
Q 040184 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL 237 (699)
Q Consensus 183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 237 (699)
+++|.++.. ..+.++.+|+.||+++|-+.+.-.-.....+..|+.|+|.+|.+
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888877632 35667778888888888776433222233466778888888766
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=5.3e-07 Score=85.10 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCCCcEEEccCCcCCcc-CcccccCCCCCcEEEccCCcCCccCC------ccCcCCCCCceEECC
Q 040184 224 CFNLEFLVLSENSLLGQ-LFSKKNYLRKLVSLHLDANYFTGEIP------KSLSNCSHLEGLYMS 281 (699)
Q Consensus 224 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~l~ 281 (699)
.+.+..|+|+.+++.+. ..+.+.+++.|.-|.++++.+..... --++.+++++.|+-+
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 33444444444444221 12334445555555555555442211 124566777777644
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.08 E-value=1.2e-07 Score=93.73 Aligned_cols=257 Identities=19% Similarity=0.153 Sum_probs=123.1
Q ss_pred CCccccEEEccCCc-Cccccc-hhcCCCCCCCEEEcccC-ccccccchhhhhCCCCCCEEEcCCCc-CcccCC-CCCCCC
Q 040184 76 PKFQLESVALSGSG-IHATFP-KFLYNQHDLEYVDFSDS-NLKGEFLNWLLENNTNLNTLVLRNNS-LSGPFR-MPIQPH 150 (699)
Q Consensus 76 ~~~~L~~L~ls~~~-i~~~~~-~~l~~~~~L~~L~ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l 150 (699)
.++++++|++.+|. ++...- ..-..|++|+.|++..| .+++.....+...+++|++++++.+. +.+... .....+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 34456666666653 322211 22235666777776663 35544445455666777777776652 332111 113344
Q ss_pred CCCCEEEccCccCC-ccCchhhhhcCCCCcEEeCcCCc-ccccCC-ccccCCCCCCEEEccCCc-CCCccchHHhhcCCC
Q 040184 151 WHLDTLYVSKNFFQ-GNIPLEIGVYFPRLVYLNLSRND-FNGSIP-SSIGDMNSLEALDLSHNQ-LTGEIPEHLAMSCFN 226 (699)
Q Consensus 151 ~~L~~L~l~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~ 226 (699)
+.++.+.+.+|.=. .+.-..+...++.+..+++..|. +++..- ..-..+..|+.|+.+++. ++..+-..+..++.+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 45555555544311 01111222233445556655543 222110 111235666777776653 222223334456677
Q ss_pred CcEEEccCCcC-CccCcccc-cCCCCCcEEEccCCcCCc--cCCccCcCCCCCceEECCCCcCc-CcC----chhhhccC
Q 040184 227 LEFLVLSENSL-LGQLFSKK-NYLRKLVSLHLDANYFTG--EIPKSLSNCSHLEGLYMSDNNLY-GNI----PAWLGNLS 297 (699)
Q Consensus 227 L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~-~~~----~~~~~~l~ 297 (699)
|+.+.++.++- +......+ .+.+.|+.+++..+.... .+...-.+++.|+.|.+++|... +.. ...-..+.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 77777776653 11111111 345566666666654321 11222245667777777766432 111 11123345
Q ss_pred CCcEEeccCCccc-ccCCccccCCCCCcEEEccccc
Q 040184 298 SLYDIMMASNHLQ-GPIPLEFCQLNYLQILDLSENN 332 (699)
Q Consensus 298 ~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~ 332 (699)
.|..+.++++... ...-+.+..+++|+.+++-.++
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6777777776543 2223345566677777766654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=2.8e-07 Score=76.78 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=59.0
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV 573 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 573 (699)
+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.||.-+|.+. .+|-.+-.-+.....++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 45667777777777 46666888888888888888887 55666666888888888888776 44433322223333445
Q ss_pred ccCcCcccCCCC
Q 040184 574 AHNNLSGKIPEW 585 (699)
Q Consensus 574 ~~N~l~~~~~~~ 585 (699)
.++++.+..+..
T Consensus 154 gnepl~~~~~~k 165 (177)
T KOG4579|consen 154 GNEPLGDETKKK 165 (177)
T ss_pred cCCcccccCccc
Confidence 566666655543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=3.1e-07 Score=76.46 Aligned_cols=106 Identities=26% Similarity=0.386 Sum_probs=63.4
Q ss_pred CCEEEcCCCcCccc--CCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEE
Q 040184 129 LNTLVLRNNSLSGP--FRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALD 206 (699)
Q Consensus 129 L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 206 (699)
+..++|++|.+... .+..+.....|+..++++|.+. ..|..+...+|.++.+++++|.|. .+|..++.++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 44455555544311 1112333445566666666666 566666666667777777777776 4566677777777777
Q ss_pred ccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184 207 LSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238 (699)
Q Consensus 207 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 238 (699)
++.|.+. ..|..++. +.++-.|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAP-LIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence 7777776 56655553 666666666666543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=6.6e-06 Score=76.86 Aligned_cols=142 Identities=25% Similarity=0.177 Sum_probs=80.5
Q ss_pred hhcCCCCCCCEEEcccCccccccchhh---hhCCCCCCEEEcCCCcCcccCCCC-------------CCCCCCCCEEEcc
Q 040184 96 KFLYNQHDLEYVDFSDSNLKGEFLNWL---LENNTNLNTLVLRNNSLSGPFRMP-------------IQPHWHLDTLYVS 159 (699)
Q Consensus 96 ~~l~~~~~L~~L~ls~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~~~-------------~~~l~~L~~L~l~ 159 (699)
.++.+||+|+..+||.|.+....|+.+ +++-+.|.+|.+++|.+.-..-.. ..+-+.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 456789999999999998876666543 456678999999988764221111 2234567777777
Q ss_pred CccCCccCchhh----hhcCCCCcEEeCcCCcccccC-----CccccCCCCCCEEEccCCcCCCccchH---HhhcCCCC
Q 040184 160 KNFFQGNIPLEI----GVYFPRLVYLNLSRNDFNGSI-----PSSIGDMNSLEALDLSHNQLTGEIPEH---LAMSCFNL 227 (699)
Q Consensus 160 ~n~i~~~~~~~~----~~~~~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L 227 (699)
.|++. ..++.. ++.-..|+++.+..|.|.... -..+..+.+|+.||+..|.++..-... +...++.|
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 77765 333222 221235677777777664221 112234566777777776665211111 11123445
Q ss_pred cEEEccCCcCC
Q 040184 228 EFLVLSENSLL 238 (699)
Q Consensus 228 ~~L~L~~n~l~ 238 (699)
+.|.+..|-++
T Consensus 245 rEL~lnDClls 255 (388)
T COG5238 245 RELRLNDCLLS 255 (388)
T ss_pred hhccccchhhc
Confidence 55555555443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=6.8e-06 Score=91.17 Aligned_cols=149 Identities=22% Similarity=0.221 Sum_probs=91.1
Q ss_pred cccEEEccCCc-CccccchhcC-CCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEE
Q 040184 79 QLESVALSGSG-IHATFPKFLY-NQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 156 (699)
Q Consensus 79 ~L~~L~ls~~~-i~~~~~~~l~-~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 156 (699)
+|++|+++|.. +....|..++ .+|+|++|.+++-.+...--..++.++++|..||+|+.+++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 68888888763 3333344443 4688888888887765333344567888888888888887754 457778888888
Q ss_pred EccCccCCc-cCchhhhhcCCCCcEEeCcCCcccccC------CccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184 157 YVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSI------PSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229 (699)
Q Consensus 157 ~l~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 229 (699)
.+.+-.+.. ..-.++|. +++|++||+|........ -+.-..+|.|+.||.|++.+...+-+.+...-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 777766642 22245665 677888888766543211 0112235666677776666654444444333344444
Q ss_pred E
Q 040184 230 L 230 (699)
Q Consensus 230 L 230 (699)
+
T Consensus 280 i 280 (699)
T KOG3665|consen 280 I 280 (699)
T ss_pred h
Confidence 3
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.87 E-value=3.5e-05 Score=67.17 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=43.2
Q ss_pred hhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcC
Q 040184 96 KFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYF 175 (699)
Q Consensus 96 ~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 175 (699)
.+|.++++|+.+.+.. .+. .+....|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+. .++...+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 3444555555555543 233 344444455555555555442 4433444455554555555543 222 2334444444
Q ss_pred CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCC
Q 040184 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL 227 (699)
Q Consensus 176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 227 (699)
++++.+++..+ +..+....|.++ .|+.+.+.. .+. .++...|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 55555555443 333344445554 555555544 233 4444444444444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=3e-05 Score=69.54 Aligned_cols=108 Identities=23% Similarity=0.229 Sum_probs=60.4
Q ss_pred hhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCcc-CcccccCCCC
Q 040184 172 GVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQ-LFSKKNYLRK 250 (699)
Q Consensus 172 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 250 (699)
+....+...+||++|.+.. -..|..++.|.+|.+.+|+|+ .|...+...+++|+.|.+.+|++... ....+..++.
T Consensus 38 g~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 38 GATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred cccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 3334466677777777652 234666677777777777776 66666555566677777777665321 1122344555
Q ss_pred CcEEEccCCcCCccCC---ccCcCCCCCceEECCC
Q 040184 251 LVSLHLDANYFTGEIP---KSLSNCSHLEGLYMSD 282 (699)
Q Consensus 251 L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~ 282 (699)
|++|.+-+|.++.... ..+..+++|+.||.++
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 5666555555542211 2234455555555544
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.85 E-value=1.1e-06 Score=86.95 Aligned_cols=259 Identities=19% Similarity=0.086 Sum_probs=142.6
Q ss_pred CCCCcEEeCCCCCCCCCCC-cccccCCCCCCEEeCCCCc-ccccCCcc-cccCCCCCcEEEcccCccccccccccCCCCC
Q 040184 1 MTSLRVLSLDLNQLTGNIS-SSPLIHLTSIERLFLSYNQ-FQIPFSLE-PFFNNSKLKVFSGECNEIFVESESSHSMTPK 77 (699)
Q Consensus 1 l~~L~~L~ls~n~l~~~i~-~~~~~~l~~L~~L~Ls~n~-~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 77 (699)
+++++.|++.++....+.. .+.-..|++|++|++-.|. ++ ..... --..+++|++|+++.+.-...........++
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT-~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT-DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH-HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 4677777777665221111 1112358888888888853 33 22222 2235788888888877543322222223444
Q ss_pred ccccEEEccCCcCccc--cchhcCCCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCCCcC-cccCCCC-CCCCCC
Q 040184 78 FQLESVALSGSGIHAT--FPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRNNSL-SGPFRMP-IQPHWH 152 (699)
Q Consensus 78 ~~L~~L~ls~~~i~~~--~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~-~~~l~~ 152 (699)
..++.+.+.||.=.+. +...=+.+..+..+++..+. +++...-.+-..+..|++|+.+++.- .+..... -.++.+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 4566776666532111 11111345556666665654 44333223335677888888877633 2221112 245577
Q ss_pred CCEEEccCcc-CCccCchhhhhcCCCCcEEeCcCCcccc--cCCccccCCCCCCEEEccCCcCCCccc----hHHhhcCC
Q 040184 153 LDTLYVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNG--SIPSSIGDMNSLEALDLSHNQLTGEIP----EHLAMSCF 225 (699)
Q Consensus 153 L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~l~ 225 (699)
|+.+.+++++ +++.--..+...++.|+.+++.++.... .+...-.+++.|++|.++++.....-. ........
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 8888888776 3333334556667788888888776432 122223467788888888775431110 11112356
Q ss_pred CCcEEEccCCcCC-ccCcccccCCCCCcEEEccCCc
Q 040184 226 NLEFLVLSENSLL-GQLFSKKNYLRKLVSLHLDANY 260 (699)
Q Consensus 226 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 260 (699)
.|+.+.++++... ......+..+++|+.+++-++.
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7888888887653 3334455667788887776654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=9.2e-06 Score=54.81 Aligned_cols=36 Identities=36% Similarity=0.654 Sum_probs=14.4
Q ss_pred ccCeEEccCCcCcccCCccccCCCCCCEEeCCCCccc
Q 040184 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN 555 (699)
Q Consensus 519 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 555 (699)
+|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2223444444444444444443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.1e-05 Score=54.52 Aligned_cols=38 Identities=32% Similarity=0.622 Sum_probs=32.4
Q ss_pred CCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184 542 NQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580 (699)
Q Consensus 542 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 580 (699)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 567679999999999999999974
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.76 E-value=7.2e-05 Score=65.18 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEE
Q 040184 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL 254 (699)
Q Consensus 175 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 254 (699)
+++|+.+.+.. .+..+...+|..+++|+.+.+.++ +. .++...|..+++++.+.+.. .+.......|..+++++.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 33444444432 233333334444444444444442 33 34444444444444444432 2222222333334444444
Q ss_pred EccCCcCCccCCccCcCCCCCceEECC
Q 040184 255 HLDANYFTGEIPKSLSNCSHLEGLYMS 281 (699)
Q Consensus 255 ~L~~n~i~~~~~~~~~~l~~L~~L~l~ 281 (699)
++..+ +......+|.++ +|+.+.+.
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 44332 222333334443 44444443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=8.4e-06 Score=90.42 Aligned_cols=136 Identities=22% Similarity=0.277 Sum_probs=77.3
Q ss_pred CCCcEEEcccCccccccccccCCCCCccccEEEccCCcCcc-ccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCC
Q 040184 52 SKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHA-TFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLN 130 (699)
Q Consensus 52 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~ 130 (699)
.+|++||+++.......-......-+|+|++|.+++-.+.. .......++++|..||+|+++++ .+ .. .+++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HH-HhccccHH
Confidence 56777777665443211111111224477777777655432 22334456777777777777776 23 23 36777777
Q ss_pred EEEcCCCcCcc-cCCCCCCCCCCCCEEEccCccCCccCc------hhhhhcCCCCcEEeCcCCccccc
Q 040184 131 TLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNFFQGNIP------LEIGVYFPRLVYLNLSRNDFNGS 191 (699)
Q Consensus 131 ~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~------~~~~~~~~~L~~L~L~~n~i~~~ 191 (699)
+|.+.+=.+.. ..-..+.++++|+.||+|..+... .+ .+.+..+|+|+.||.+++.+...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 77776544442 112235567778888887765431 12 12233477888888888777643
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00012 Score=74.83 Aligned_cols=32 Identities=13% Similarity=0.387 Sum_probs=16.9
Q ss_pred CccCeEEccCCcCcccCCccccCCCCCCEEeCCCC
Q 040184 518 TRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552 (699)
Q Consensus 518 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 552 (699)
++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35666666666554 2333333 45666666554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=6.3e-05 Score=67.54 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=35.9
Q ss_pred ccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC-CCCcCCCCCCCCcc
Q 040184 519 RIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP-EWTAQFTTFKEDSY 597 (699)
Q Consensus 519 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~~~~ 597 (699)
+...+||++|.+... +.|..++.|.+|.|++|+|+.+.|.--.-++.|+.|.+.+|++...-. ..+..+++|+.+++
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344455555554422 344444555555555555554444333344445555555554432111 11122344455555
Q ss_pred CCCCC
Q 040184 598 EGNPL 602 (699)
Q Consensus 598 ~~Np~ 602 (699)
.|||.
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 55544
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00053 Score=70.18 Aligned_cols=137 Identities=12% Similarity=0.159 Sum_probs=86.2
Q ss_pred ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184 365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN 444 (699)
Q Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~ 444 (699)
+..+..++.|++++|.++.. |. -..+|+.|.+++|.-....|+.+ .++|++|++++|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP---------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP---------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----------
Confidence 44567888999999887743 41 22468999998865434556544 2578899998884222222
Q ss_pred CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCc--cCCccccccCccCe
Q 040184 445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG--EIPPQISKLTRIRA 522 (699)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~ 522 (699)
++|+.|+++++.... .+| ++|+.
T Consensus 112 -------------------------------------------------~sLe~L~L~~n~~~~L~~LP------ssLk~ 136 (426)
T PRK15386 112 -------------------------------------------------ESVRSLEIKGSATDSIKNVP------NGLTS 136 (426)
T ss_pred -------------------------------------------------cccceEEeCCCCCcccccCc------chHhh
Confidence 357777777665431 223 35777
Q ss_pred EEccCCc-Cc-ccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCc
Q 040184 523 LNLSHNN-LT-GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNN 577 (699)
Q Consensus 523 L~Ls~N~-l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 577 (699)
|.+.+++ .. ..+|..+ .++|++|++++|... ..|+.+. .+|+.|+++.|.
T Consensus 137 L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 137 LSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 7775433 21 1112111 268999999999876 4555444 589999998874
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=7.6e-05 Score=81.67 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=16.9
Q ss_pred ccEEECCCCCCCCCc-Chhhhc-CCCCCEEEcccCcC
Q 040184 371 IVTLDLSYNSFSGYI-PYWIER-LTYLRYLILANNNL 405 (699)
Q Consensus 371 L~~L~Ls~n~i~~~~-~~~~~~-l~~L~~L~L~~n~l 405 (699)
++.|+++.+...... -..... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 666666665533211 111111 45566666666544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00061 Score=64.17 Aligned_cols=107 Identities=18% Similarity=0.115 Sum_probs=63.1
Q ss_pred ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccC--ccccccccccCCCCCccccEEEccCCcCccc-cchhcC
Q 040184 23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECN--EIFVESESSHSMTPKFQLESVALSGSGIHAT-FPKFLY 99 (699)
Q Consensus 23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~-~~~~l~ 99 (699)
...+..|+.|++.+..++ +...|..|++|+.|.++.| ++........ ..+++|+++++++|++... --.-+.
T Consensus 39 ~d~~~~le~ls~~n~glt---t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~--e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT---TLTNFPKLPKLKKLELSDNYRRVSGGLEVLA--EKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccchhhhhhhcccee---ecccCCCcchhhhhcccCCcccccccceehh--hhCCceeEEeecCCccccccccchhh
Confidence 445667777777777665 2234677888888888888 4433322222 3335788888888877521 112244
Q ss_pred CCCCCCEEEcccCcccc--ccchhhhhCCCCCCEEEc
Q 040184 100 NQHDLEYVDFSDSNLKG--EFLNWLLENNTNLNTLVL 134 (699)
Q Consensus 100 ~~~~L~~L~ls~n~~~~--~~~~~~~~~l~~L~~L~L 134 (699)
.+++|..|++.+|..+. ..-..+|.-+++|++|+-
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 56667777777776552 112334566667776653
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00013 Score=79.83 Aligned_cols=127 Identities=25% Similarity=0.100 Sum_probs=57.7
Q ss_pred CCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCCCc-CcccCC-CCCCCCCCCCEEEccCccCC-ccCchhhhhcC
Q 040184 100 NQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRNNS-LSGPFR-MPIQPHWHLDTLYVSKNFFQ-GNIPLEIGVYF 175 (699)
Q Consensus 100 ~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~~~ 175 (699)
.+++|+.|+++.+. +++.....+...+++|++|.+.++. +++..- .....++.|++|+++++... ...-..+...+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 44556666666555 4444444443445666666655554 332211 11234455666666655432 11112223345
Q ss_pred CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCC--ccchHHhhcCCCCcEEEccCCc
Q 040184 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTG--EIPEHLAMSCFNLEFLVLSENS 236 (699)
Q Consensus 176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~ 236 (699)
++++.|.+....- +..++.+.+....... .........+++++.+.+..+.
T Consensus 321 ~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 321 PNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 6666654432221 3333444433322211 2233334456666666666655
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00053 Score=64.56 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=5.4
Q ss_pred CCCCCEEEcCCC
Q 040184 126 NTNLNTLVLRNN 137 (699)
Q Consensus 126 l~~L~~L~Ls~n 137 (699)
+++|++|.++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 344444444444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00011 Score=69.15 Aligned_cols=100 Identities=25% Similarity=0.282 Sum_probs=58.2
Q ss_pred CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEE
Q 040184 102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181 (699)
Q Consensus 102 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L 181 (699)
.+.+.|++.+|.+++ + +++.+++.|++|.||-|+|+.. ..+..|++|++|.|..|.|.+.-.....+.+|+|++|
T Consensus 19 ~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 355667777777763 2 2356777777777777777653 3366667777777777766532223334446666666
Q ss_pred eCcCCcccccCCc-----cccCCCCCCEEE
Q 040184 182 NLSRNDFNGSIPS-----SIGDMNSLEALD 206 (699)
Q Consensus 182 ~L~~n~i~~~~~~-----~~~~l~~L~~L~ 206 (699)
.|..|.-.+..+. .+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666654433222 233455555554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.00029 Score=66.41 Aligned_cols=18 Identities=33% Similarity=0.193 Sum_probs=8.8
Q ss_pred ccCCCCccEEECCCCCCC
Q 040184 365 FFNRSSIVTLDLSYNSFS 382 (699)
Q Consensus 365 ~~~~~~L~~L~Ls~n~i~ 382 (699)
+.++++|+.|.|..|.-.
T Consensus 84 LknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcCchhhhHhhccCCcc
Confidence 444555555555554433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.82 E-value=0.01 Score=33.16 Aligned_cols=12 Identities=58% Similarity=0.703 Sum_probs=4.9
Q ss_pred CCEEeCCCCccc
Q 040184 544 VESLDISYNNLN 555 (699)
Q Consensus 544 L~~L~Ls~N~l~ 555 (699)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.46 E-value=0.014 Score=32.56 Aligned_cols=19 Identities=58% Similarity=0.814 Sum_probs=9.7
Q ss_pred cCeEEccCCcCcccCCcccc
Q 040184 520 IRALNLSHNNLTGVIPVTFS 539 (699)
Q Consensus 520 L~~L~Ls~N~l~~~~~~~~~ 539 (699)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555566666555 3333343
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.44 E-value=0.0013 Score=70.16 Aligned_cols=187 Identities=27% Similarity=0.213 Sum_probs=92.1
Q ss_pred ccEEEccCCcCccccc----hhcCCCCCCCEEEcccCccccccchhhhhCC----CCCCEEEcCCCcCcccC----CCCC
Q 040184 80 LESVALSGSGIHATFP----KFLYNQHDLEYVDFSDSNLKGEFLNWLLENN----TNLNTLVLRNNSLSGPF----RMPI 147 (699)
Q Consensus 80 L~~L~ls~~~i~~~~~----~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l----~~L~~L~Ls~n~i~~~~----~~~~ 147 (699)
+.++.|.+|.+..... .++...++|+.|++++|.+.+.....+...+ ..+++|++..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777776654422 3445667777777777777644333332222 23455555555554321 1223
Q ss_pred CCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCc----cccCCCCCCEEEccCCcCCCccchH---H
Q 040184 148 QPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPS----SIGDMNSLEALDLSHNQLTGEIPEH---L 220 (699)
Q Consensus 148 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~---~ 220 (699)
.....++.++++.|.+... +. -.++. .+....++++|++.+|.++...... .
T Consensus 169 ~~~~~l~~l~l~~n~l~~~---g~------------------~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIEL---GL------------------LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred hcccchhHHHHHhcccchh---hh------------------HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 3344455555554443200 00 01111 1223445566666666554211111 1
Q ss_pred hhcCCC-CcEEEccCCcCCcc----CcccccCC-CCCcEEEccCCcCCccCC----ccCcCCCCCceEECCCCcCcC
Q 040184 221 AMSCFN-LEFLVLSENSLLGQ----LFSKKNYL-RKLVSLHLDANYFTGEIP----KSLSNCSHLEGLYMSDNNLYG 287 (699)
Q Consensus 221 ~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~ 287 (699)
....+. +..+++..|.+.+. ....+..+ ..+++++++.|.++.... ..+..++.++.+.+++|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 112222 44466666655422 12223333 566777777777764332 345566788888888887754
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.78 E-value=0.00086 Score=71.43 Aligned_cols=137 Identities=28% Similarity=0.287 Sum_probs=69.2
Q ss_pred CCCEEEcccCccccccchhh---hhCCCCCCEEEcCCCcCcc----cCCC----CCCCCCCCCEEEccCccCCccCch--
Q 040184 103 DLEYVDFSDSNLKGEFLNWL---LENNTNLNTLVLRNNSLSG----PFRM----PIQPHWHLDTLYVSKNFFQGNIPL-- 169 (699)
Q Consensus 103 ~L~~L~ls~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~i~~----~~~~----~~~~l~~L~~L~l~~n~i~~~~~~-- 169 (699)
.+++|++..|.+++.....+ +.....++.++++.|.+.. ..+. .+....++++|.+++|.++.....
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34455555555543222111 1224455555555554421 0111 223455677777777766522111
Q ss_pred -hhhhcCCC-CcEEeCcCCccccc----CCccccCC-CCCCEEEccCCcCCCccchHH---hhcCCCCcEEEccCCcCCc
Q 040184 170 -EIGVYFPR-LVYLNLSRNDFNGS----IPSSIGDM-NSLEALDLSHNQLTGEIPEHL---AMSCFNLEFLVLSENSLLG 239 (699)
Q Consensus 170 -~~~~~~~~-L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~ 239 (699)
......+. +..+++..|.+.+. ....+..+ ..++.++++.|.++..-...+ ...++.++++.++.|.+..
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11111233 55577777776532 22233444 567788888888774332222 1246678888888887653
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.64 E-value=0.0052 Score=56.68 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=73.8
Q ss_pred CCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184 493 LNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS 572 (699)
Q Consensus 493 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 572 (699)
+...+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 467888999999987 45677888999999999999998 78888999999999999999998 7888999999999999
Q ss_pred cccCcCc
Q 040184 573 VAHNNLS 579 (699)
Q Consensus 573 l~~N~l~ 579 (699)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999864
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=0.015 Score=52.82 Aligned_cols=84 Identities=19% Similarity=0.074 Sum_probs=48.5
Q ss_pred CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCC-cCccccchhcCCCCCCC
Q 040184 27 TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGS-GIHATFPKFLYNQHDLE 105 (699)
Q Consensus 27 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~~~~~~l~~~~~L~ 105 (699)
..++.+|-++..|. ....+.+.+++.++.|.+.++.......-.......++|+.|++++| .|+......+..+++|+
T Consensus 101 ~~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 45678888888876 45666777777777777777654322111110112235666666665 45555445555556666
Q ss_pred EEEccc
Q 040184 106 YVDFSD 111 (699)
Q Consensus 106 ~L~ls~ 111 (699)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 655543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.84 E-value=0.15 Score=29.68 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=10.7
Q ss_pred CCCCcEEeCCCCCCCCCCCccc
Q 040184 1 MTSLRVLSLDLNQLTGNISSSP 22 (699)
Q Consensus 1 l~~L~~L~ls~n~l~~~i~~~~ 22 (699)
|++|++|+|++|.|+ .+|..+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 345555555555555 444433
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.84 E-value=0.15 Score=29.68 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=10.7
Q ss_pred CCCCcEEeCCCCCCCCCCCccc
Q 040184 1 MTSLRVLSLDLNQLTGNISSSP 22 (699)
Q Consensus 1 l~~L~~L~ls~n~l~~~i~~~~ 22 (699)
|++|++|+|++|.|+ .+|..+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHH
Confidence 345555555555555 444433
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=0.024 Score=51.50 Aligned_cols=83 Identities=16% Similarity=0.084 Sum_probs=53.5
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCCC-cCcccCCCCCCCCCCCCEE
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRNN-SLSGPFRMPIQPHWHLDTL 156 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 156 (699)
.++.+|-+++.|..+.-+.+.+++.++.|.+.+|. +.+.-.+.+-.-.++|+.|++++| +|++-....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 68888888888877777778888888888888776 332222222223467777777766 4554444445556666666
Q ss_pred EccCc
Q 040184 157 YVSKN 161 (699)
Q Consensus 157 ~l~~n 161 (699)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 65543
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.33 E-value=0.042 Score=68.41 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=23.2
Q ss_pred eCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184 548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 548 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
||++|+|+...+..|..+++|+.|+|++|++.|-+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 466677765555666666666666666666666554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.64 E-value=0.18 Score=29.35 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=6.2
Q ss_pred CCCEEeCCCCccc
Q 040184 543 QVESLDISYNNLN 555 (699)
Q Consensus 543 ~L~~L~Ls~N~l~ 555 (699)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.64 E-value=0.18 Score=29.35 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=6.2
Q ss_pred CCCEEeCCCCccc
Q 040184 543 QVESLDISYNNLN 555 (699)
Q Consensus 543 ~L~~L~Ls~N~l~ 555 (699)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.54 E-value=0.19 Score=25.91 Aligned_cols=11 Identities=64% Similarity=0.921 Sum_probs=3.6
Q ss_pred CCEEEccCCcC
Q 040184 202 LEALDLSHNQL 212 (699)
Q Consensus 202 L~~L~L~~n~l 212 (699)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.43 E-value=0.01 Score=54.79 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=76.8
Q ss_pred ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCC
Q 040184 512 PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTT 591 (699)
Q Consensus 512 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 591 (699)
..+......+.||++.|++. -....|+.++.|..||++.|++. ..|..+.+...++.+++.+|..+ ..|..+.+.+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34677889999999999997 45567888999999999999998 78888899899999999989887 57777888999
Q ss_pred CCCCccCCCCCC
Q 040184 592 FKEDSYEGNPLL 603 (699)
Q Consensus 592 l~~~~~~~Np~~ 603 (699)
++....-+||+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999865
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.40 E-value=0.18 Score=28.65 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=6.7
Q ss_pred CCCCEEeCCCCcccc
Q 040184 542 NQVESLDISYNNLNG 556 (699)
Q Consensus 542 ~~L~~L~Ls~N~l~~ 556 (699)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.64 E-value=2.1 Score=24.92 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=6.2
Q ss_pred CCCEEeCCCCccc
Q 040184 543 QVESLDISYNNLN 555 (699)
Q Consensus 543 ~L~~L~Ls~N~l~ 555 (699)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444455555443
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.82 E-value=24 Score=37.09 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=9.1
Q ss_pred CCCCCcEEEcccccCc
Q 040184 319 QLNYLQILDLSENNIS 334 (699)
Q Consensus 319 ~l~~L~~L~l~~n~i~ 334 (699)
.-+.+..|++++|...
T Consensus 438 stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 438 STQTLAKLDISGNGMG 453 (553)
T ss_pred cCcccccccccCCCcc
Confidence 3345666666666544
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.86 E-value=28 Score=36.60 Aligned_cols=59 Identities=22% Similarity=0.128 Sum_probs=29.8
Q ss_pred ccEEECCCCCCCCCcCh---hhhcCCCCCEEEcccCcCCC----CCCcccCCCCCCCEEECcCCcc
Q 040184 371 IVTLDLSYNSFSGYIPY---WIERLTYLRYLILANNNLEG----EVPIQLCRLKQLRLIDLSNNNI 429 (699)
Q Consensus 371 L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ls~n~i 429 (699)
+..+.++.|........ .+..-+.+.+|++++|.... .+|.....-..++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 45566666665533222 22334566777777776542 2233333344455555555544
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.05 E-value=3.4 Score=23.98 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=7.5
Q ss_pred CCCEEeCCCCccc
Q 040184 543 QVESLDISYNNLN 555 (699)
Q Consensus 543 ~L~~L~Ls~N~l~ 555 (699)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555566666555
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.74 E-value=5.2 Score=23.71 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=10.1
Q ss_pred CCCCEEeCCCCccc
Q 040184 27 TSIERLFLSYNQFQ 40 (699)
Q Consensus 27 ~~L~~L~Ls~n~~~ 40 (699)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777777777775
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.99 E-value=3 Score=44.26 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=18.3
Q ss_pred CCCCCCEEeCCCCcccccCC-cccc-cCCCCCcEEEcccC
Q 040184 25 HLTSIERLFLSYNQFQIPFS-LEPF-FNNSKLKVFSGECN 62 (699)
Q Consensus 25 ~l~~L~~L~Ls~n~~~~~~~-~~~~-~~l~~L~~L~L~~n 62 (699)
+.+.+..++|++|++.. +. ...+ ..-|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhc-hhhhhHHHHhcchhheeecccc
Confidence 45666666666666541 11 1111 12355556666655
No 92
>PF15102 TMEM154: TMEM154 protein family
Probab=55.09 E-value=8.7 Score=33.20 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=12.0
Q ss_pred hhhHHHHHhhhhhhhccccchhh
Q 040184 640 SSYVIVILAIIGVLYVNPYWHRR 662 (699)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~ 662 (699)
+.++++++++++++++++|||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 34444445555555555666554
No 93
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=52.02 E-value=9.6 Score=31.79 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCccCCCCccccceeeeehhhhhHHHHHhhhhhhhccccchhhHHH
Q 040184 611 CDVAAVPEASNEEDGNSLIDMGSFYITFTSSYVIVILAIIGVLYVNPYWHRRWFY 665 (699)
Q Consensus 611 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (699)
|+......+...+.++.... .+.+.+++++.+++++..+.+++.+|.|+++..
T Consensus 80 CEh~dLl~~~~~~k~n~~t~--Yia~~~il~il~~i~is~~~~~~yr~~r~~~~~ 132 (139)
T PHA03099 80 CQHVVLVDYQRSEKPNTTTS--YIPSPGIVLVLVGIIITCCLLSVYRFTRRTKLP 132 (139)
T ss_pred ccceeeeeeeccccccchhh--hhhhhHHHHHHHHHHHHHHHHhhheeeecccCc
Confidence 66555444443333332211 122233344444444445555665666665543
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=49.75 E-value=9.9 Score=48.77 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=29.9
Q ss_pred EccCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 040184 524 NLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG 556 (699)
Q Consensus 524 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 556 (699)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888999999999999999998874
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.96 E-value=16 Score=21.05 Aligned_cols=13 Identities=23% Similarity=0.079 Sum_probs=9.4
Q ss_pred CCCCCEEeCCCCc
Q 040184 26 LTSIERLFLSYNQ 38 (699)
Q Consensus 26 l~~L~~L~Ls~n~ 38 (699)
|++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677777777774
No 96
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=40.95 E-value=5.3 Score=27.57 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc
Q 040184 600 NPLLCGKPLPDCDVAAVPEASNE 622 (699)
Q Consensus 600 Np~~C~~~~~~c~~~~~~~~~~~ 622 (699)
|||.| +|+..|+..|...
T Consensus 1 NP~~C-----dC~l~~~~~w~~~ 18 (51)
T smart00082 1 NPFIC-----DCELRWLLRWLQA 18 (51)
T ss_pred CCccC-----cCCchHHHHHHHh
Confidence 89999 9999988877644
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.25 E-value=17 Score=38.88 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=29.4
Q ss_pred cccEEEccCCcCccc--cchhcCCCCCCCEEEcccC--ccccccchhh-hhCCCCCCEEEcCCCcCc
Q 040184 79 QLESVALSGSGIHAT--FPKFLYNQHDLEYVDFSDS--NLKGEFLNWL-LENNTNLNTLVLRNNSLS 140 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~--~~~~l~~~~~L~~L~ls~n--~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~ 140 (699)
.+..++|++|++... +...-...|+|+.|+|++| .+.. .+ ++ =-+...|++|.+.+|.+.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hh-hhhhhcCCCHHHeeecCCccc
Confidence 456666666655322 1111224466777777776 3321 11 11 013345666777776654
No 98
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.51 E-value=25 Score=30.72 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.7
Q ss_pred eeehhhh
Q 040184 635 YITFTSS 641 (699)
Q Consensus 635 ~~~~~~~ 641 (699)
.|+++++
T Consensus 51 VIGvVVG 57 (154)
T PF04478_consen 51 VIGVVVG 57 (154)
T ss_pred EEEEEec
Confidence 3343333
No 99
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.66 E-value=98 Score=28.34 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q 040184 611 CDVAAVPEAS 620 (699)
Q Consensus 611 c~~~~~~~~~ 620 (699)
|.....+.|.
T Consensus 52 C~~~~~~~~~ 61 (179)
T PF13908_consen 52 CDNYDTPDWT 61 (179)
T ss_pred cccccccccc
Confidence 5544444443
No 100
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.97 E-value=85 Score=20.42 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=8.8
Q ss_pred eeehhhhhHHHHHhhhhhhh
Q 040184 635 YITFTSSYVIVILAIIGVLY 654 (699)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~ 654 (699)
+..+.+++++.+.+++.++|
T Consensus 11 IlVF~lVglv~i~iva~~iY 30 (43)
T PF08114_consen 11 ILVFCLVGLVGIGIVALFIY 30 (43)
T ss_pred eeehHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
Done!