Query 040184
Match_columns 699
No_of_seqs 495 out of 4992
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 09:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.7E-70 2.3E-74 624.6 44.4 617 1-623 99-760 (768)
2 3rgz_A Protein brassinosteroid 100.0 8E-65 2.7E-69 582.5 37.7 591 1-604 76-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.3E-60 2.8E-64 536.6 45.4 556 3-622 26-637 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-55 7.2E-60 500.3 48.7 532 1-584 48-627 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-56 4.2E-61 519.9 37.6 526 5-605 7-562 (844)
6 3t6q_A CD180 antigen; protein- 100.0 7.4E-56 2.5E-60 497.3 40.1 541 5-620 15-572 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-55 1.8E-59 490.4 36.2 541 4-622 13-572 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.2E-54 1.1E-58 484.0 38.7 515 2-583 33-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-53 4.7E-58 494.4 37.9 516 2-584 24-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-52 4E-57 471.3 34.4 512 2-584 32-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 4E-49 1.4E-53 439.6 34.8 519 4-616 9-539 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1E-47 3.5E-52 428.2 31.5 493 2-585 28-537 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-47 2.2E-51 419.6 33.3 391 5-430 8-423 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-46 9.7E-51 422.5 36.7 539 6-620 35-592 (635)
15 4eco_A Uncharacterized protein 100.0 4E-47 1.4E-51 425.6 20.3 288 112-431 193-527 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-46 1.8E-50 412.2 29.0 462 79-612 27-514 (549)
17 4eco_A Uncharacterized protein 100.0 9.1E-47 3.1E-51 422.8 18.5 437 79-583 82-604 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-46 7.5E-51 412.1 20.8 463 55-620 3-494 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-46 2E-50 408.8 23.6 454 5-583 3-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 2.2E-45 7.5E-50 417.4 28.2 461 79-604 324-865 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 3E-45 1E-49 416.4 26.2 355 143-580 481-865 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 8.7E-44 3E-48 402.1 34.6 513 2-583 52-584 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-42 5.7E-47 384.3 24.8 459 80-616 33-518 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-42 7.5E-47 383.3 23.0 461 26-584 30-515 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.9E-40 1.3E-44 356.2 31.4 378 154-604 13-409 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.6E-39 5.6E-44 351.3 28.4 367 127-584 30-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1E-37 3.4E-42 334.1 27.3 401 79-604 12-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.1E-37 7.2E-42 331.6 27.8 387 100-604 9-410 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 4.7E-37 1.6E-41 333.8 23.2 347 179-607 14-360 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 1.8E-36 6.2E-41 329.2 23.9 351 153-586 13-363 (477)
31 1o6v_A Internalin A; bacterial 100.0 3.3E-35 1.1E-39 317.7 33.5 345 127-581 46-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 5E-36 1.7E-40 321.2 24.4 375 80-586 20-394 (457)
33 1o6v_A Internalin A; bacterial 100.0 5.2E-35 1.8E-39 316.2 32.3 345 101-556 45-389 (466)
34 3o6n_A APL1; leucine-rich repe 100.0 5.8E-35 2E-39 308.5 25.9 332 176-605 45-376 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-34 4.8E-39 309.9 27.9 353 22-439 37-396 (457)
36 3oja_B Anopheles plasmodium-re 100.0 5.2E-34 1.8E-38 317.7 26.0 333 176-606 51-383 (597)
37 4fmz_A Internalin; leucine ric 100.0 3.3E-32 1.1E-36 282.8 31.3 302 2-333 44-345 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 1.3E-32 4.5E-37 290.5 28.4 333 150-581 44-376 (390)
39 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-33 8.9E-38 285.6 18.9 259 274-612 51-313 (313)
40 4fmz_A Internalin; leucine ric 100.0 3.7E-32 1.3E-36 282.5 27.8 304 175-579 43-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.7E-31 5.7E-36 297.5 28.9 311 150-557 50-360 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 4.4E-34 1.5E-38 309.3 -1.6 185 151-335 3-213 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 4.4E-34 1.5E-38 309.3 -1.6 308 79-431 4-355 (461)
44 1xku_A Decorin; proteoglycan, 100.0 6.7E-30 2.3E-34 263.2 28.0 270 226-577 53-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 3E-30 1E-34 265.9 25.4 288 201-577 34-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 6.5E-30 2.2E-34 263.4 27.6 252 152-438 34-285 (332)
47 1xku_A Decorin; proteoglycan, 100.0 3E-29 1E-33 258.3 30.7 250 152-437 32-283 (330)
48 1ogq_A PGIP-2, polygalacturona 100.0 5.5E-31 1.9E-35 268.4 16.7 251 250-580 51-305 (313)
49 3zyj_A Leucine-rich repeat-con 100.0 2.5E-28 8.7E-33 261.6 19.9 251 251-583 45-296 (440)
50 3ogk_B Coronatine-insensitive 100.0 9.2E-31 3.1E-35 292.7 -0.0 395 125-575 110-547 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 2.8E-28 9.6E-33 253.5 16.6 205 199-431 30-236 (353)
52 3zyi_A Leucine-rich repeat-con 100.0 7.7E-28 2.6E-32 258.9 19.9 250 274-582 55-306 (452)
53 2z66_A Variable lymphocyte rec 100.0 8.4E-28 2.9E-32 244.7 17.3 250 228-581 10-263 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 5.6E-28 1.9E-32 251.2 16.1 280 224-583 30-318 (353)
55 3ogk_B Coronatine-insensitive 100.0 6.9E-30 2.3E-34 285.6 1.7 411 119-581 65-528 (592)
56 2z66_A Variable lymphocyte rec 100.0 5.7E-28 1.9E-32 246.0 15.1 261 276-620 10-273 (306)
57 3zyi_A Leucine-rich repeat-con 99.9 2.7E-26 9.3E-31 246.8 24.5 248 227-556 56-304 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 3.7E-26 1.3E-30 244.8 24.5 249 226-556 44-293 (440)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-26 7.9E-31 231.4 19.5 236 273-586 32-268 (285)
60 2p1m_B Transport inhibitor res 99.9 3.7E-29 1.3E-33 279.9 -1.9 424 97-576 61-541 (594)
61 1ozn_A Reticulon 4 receptor; N 99.9 8.5E-27 2.9E-31 234.6 14.5 226 300-582 14-241 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2E-27 6.9E-32 242.8 7.7 246 272-584 33-281 (317)
63 4fcg_A Uncharacterized protein 99.9 7.8E-26 2.7E-30 231.7 18.6 225 102-334 81-314 (328)
64 4fcg_A Uncharacterized protein 99.9 2.2E-25 7.5E-30 228.3 21.0 225 79-310 82-314 (328)
65 2p1m_B Transport inhibitor res 99.9 2.9E-28 9.8E-33 272.6 -1.6 397 77-554 104-543 (594)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-24 4.6E-29 239.2 27.3 266 3-319 41-306 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-27 6.6E-32 242.9 2.8 262 274-601 11-273 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-24 7.4E-29 237.5 26.0 267 177-565 41-307 (622)
69 1wwl_A Monocyte differentiatio 99.9 2.5E-26 8.6E-31 234.1 8.6 209 196-430 39-266 (312)
70 1wwl_A Monocyte differentiatio 99.9 5E-26 1.7E-30 231.8 9.9 247 79-335 44-310 (312)
71 3oja_A Leucine-rich immune mol 99.9 5.8E-26 2E-30 245.4 10.1 150 272-431 33-183 (487)
72 3oja_A Leucine-rich immune mol 99.9 8.9E-26 3.1E-30 243.9 10.6 147 250-406 35-182 (487)
73 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.9E-28 209.7 21.1 182 370-604 38-219 (270)
74 2z62_A TOLL-like receptor 4, v 99.9 8.5E-24 2.9E-28 211.6 18.7 186 365-604 48-238 (276)
75 1p9a_G Platelet glycoprotein I 99.9 4.2E-24 1.4E-28 214.5 15.7 190 369-620 31-220 (290)
76 2o6q_A Variable lymphocyte rec 99.9 9.7E-23 3.3E-27 202.9 22.3 206 323-584 18-223 (270)
77 2z62_A TOLL-like receptor 4, v 99.9 1E-22 3.6E-27 203.6 20.6 221 156-406 12-237 (276)
78 1p9a_G Platelet glycoprotein I 99.9 2.2E-22 7.5E-27 202.0 20.4 205 318-582 7-211 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.7E-27 201.4 17.7 209 293-589 37-245 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.8E-27 202.6 14.2 182 23-213 37-218 (272)
81 3m19_A Variable lymphocyte rec 99.9 1.6E-22 5.6E-27 198.9 14.0 179 346-581 16-194 (251)
82 3goz_A Leucine-rich repeat-con 99.9 1.4E-22 4.8E-27 211.0 9.3 261 6-288 2-299 (362)
83 3goz_A Leucine-rich repeat-con 99.9 2E-22 6.7E-27 209.8 8.8 226 83-308 3-264 (362)
84 3m19_A Variable lymphocyte rec 99.9 8.3E-21 2.8E-25 186.7 19.3 189 370-619 15-204 (251)
85 4glp_A Monocyte differentiatio 99.9 2.7E-21 9.3E-26 196.7 16.0 227 102-334 64-307 (310)
86 2xwt_C Thyrotropin receptor; s 99.9 3.3E-21 1.1E-25 188.2 14.7 196 79-283 32-236 (239)
87 2ast_B S-phase kinase-associat 99.8 3.4E-22 1.2E-26 206.2 6.6 202 79-283 71-282 (336)
88 2ca6_A RAN GTPase-activating p 99.8 5.1E-22 1.8E-26 208.9 7.3 241 94-335 24-317 (386)
89 2xwt_C Thyrotropin receptor; s 99.8 9E-21 3.1E-25 185.1 14.9 178 128-310 32-218 (239)
90 2ca6_A RAN GTPase-activating p 99.8 5.2E-22 1.8E-26 208.9 6.3 246 46-313 26-319 (386)
91 2ast_B S-phase kinase-associat 99.8 1.2E-21 4.1E-26 202.1 8.8 251 80-341 49-313 (336)
92 1h6u_A Internalin H; cell adhe 99.8 3.2E-20 1.1E-24 188.1 18.6 195 23-239 37-231 (308)
93 4glp_A Monocyte differentiatio 99.8 2.7E-20 9.2E-25 189.3 16.3 225 152-406 65-307 (310)
94 1h6u_A Internalin H; cell adhe 99.8 7.6E-20 2.6E-24 185.4 19.2 191 126-334 40-230 (308)
95 2v9t_B SLIT homolog 2 protein 99.8 1.6E-20 5.4E-25 180.2 10.7 120 495-619 57-176 (220)
96 4ay9_X Follicle-stimulating ho 99.8 1.6E-19 5.6E-24 186.7 18.3 244 154-428 12-257 (350)
97 4ay9_X Follicle-stimulating ho 99.8 3.3E-19 1.1E-23 184.5 18.1 238 105-351 12-253 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 5.3E-20 1.8E-24 176.6 10.5 155 372-582 14-169 (220)
99 2o6s_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 167.9 16.1 162 368-589 27-188 (208)
100 2xot_A Amphoterin-induced prot 99.8 9.1E-20 3.1E-24 189.4 10.4 110 495-604 89-203 (361)
101 3cvr_A Invasion plasmid antige 99.8 2.1E-19 7.2E-24 195.3 13.0 82 495-585 161-249 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 1.4E-18 4.6E-23 166.7 15.0 156 372-583 14-169 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.4E-23 166.9 14.6 164 396-620 14-178 (220)
104 3e6j_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 166.9 15.8 156 371-583 21-176 (229)
105 2o6s_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 164.0 14.7 155 177-339 29-183 (208)
106 3e6j_A Variable lymphocyte rec 99.8 8.5E-18 2.9E-22 162.3 15.8 153 395-604 21-173 (229)
107 3cvr_A Invasion plasmid antige 99.8 9.8E-18 3.4E-22 182.2 17.5 125 177-319 121-252 (571)
108 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5E-22 167.0 15.6 152 365-581 64-215 (291)
109 2xot_A Amphoterin-induced prot 99.7 9.4E-18 3.2E-22 174.2 13.5 176 154-334 21-202 (361)
110 1h6t_A Internalin B; cell adhe 99.7 6.7E-17 2.3E-21 162.1 16.5 171 124-334 43-213 (291)
111 1m9s_A Internalin B; cell inva 99.7 8.9E-17 3.1E-21 176.8 17.5 171 125-311 41-211 (605)
112 4ezg_A Putative uncharacterize 99.7 3.7E-17 1.3E-21 154.0 12.4 154 366-580 41-195 (197)
113 2wfh_A SLIT homolog 2 protein 99.7 1.2E-17 4.3E-22 156.2 8.8 121 494-620 31-151 (193)
114 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4E-21 175.9 17.1 192 299-583 23-214 (605)
115 1w8a_A SLIT protein; signaling 99.7 1.9E-16 6.7E-21 148.2 15.8 129 372-556 11-140 (192)
116 1w8a_A SLIT protein; signaling 99.7 2.2E-17 7.4E-22 154.7 8.8 121 494-619 29-150 (192)
117 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.3E-20 159.3 23.0 270 23-310 109-383 (401)
118 3sb4_A Hypothetical leucine ri 99.7 1.3E-16 4.3E-21 163.5 14.5 289 26-327 24-327 (329)
119 1dce_A Protein (RAB geranylger 99.7 4.6E-19 1.6E-23 193.9 -4.0 204 270-573 346-567 (567)
120 3sb4_A Hypothetical leucine ri 99.7 5.3E-17 1.8E-21 166.3 11.3 63 509-572 264-327 (329)
121 1xeu_A Internalin C; cellular 99.7 7.9E-17 2.7E-21 159.0 11.4 152 365-582 37-188 (263)
122 4fs7_A Uncharacterized protein 99.7 2.2E-15 7.4E-20 158.5 21.2 59 365-425 316-374 (394)
123 4ezg_A Putative uncharacterize 99.7 2.9E-16 1E-20 147.8 13.0 150 176-334 44-194 (197)
124 4fdw_A Leucine rich hypothetic 99.7 4.7E-15 1.6E-19 154.9 21.9 265 249-579 113-383 (401)
125 4fs7_A Uncharacterized protein 99.7 4.5E-15 1.5E-19 156.0 20.7 247 139-425 59-305 (394)
126 1xeu_A Internalin C; cellular 99.6 2.3E-16 8E-21 155.6 9.9 166 79-262 20-185 (263)
127 1dce_A Protein (RAB geranylger 99.6 7.4E-19 2.5E-23 192.2 -9.3 188 99-312 346-548 (567)
128 4b8c_D Glucose-repressible alc 99.6 1.2E-16 4.2E-21 180.4 5.0 223 27-285 173-403 (727)
129 2wfh_A SLIT homolog 2 protein 99.6 3.9E-15 1.3E-19 139.2 13.5 90 494-583 54-143 (193)
130 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.8E-20 138.2 10.7 87 494-580 71-161 (168)
131 2ell_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 137.4 10.0 137 368-560 23-164 (168)
132 2o6r_A Variable lymphocyte rec 99.6 9.2E-15 3.1E-19 135.0 13.3 89 495-583 53-141 (177)
133 2o6r_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 135.4 12.7 111 494-604 28-138 (177)
134 2je0_A Acidic leucine-rich nuc 99.6 3E-15 1E-19 133.9 9.4 128 393-575 17-149 (149)
135 4b8c_D Glucose-repressible alc 99.6 4.6E-16 1.6E-20 175.7 3.8 130 297-437 173-312 (727)
136 2je0_A Acidic leucine-rich nuc 99.5 6E-15 2.1E-19 132.0 7.4 129 368-551 16-149 (149)
137 3g39_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 129.6 10.4 117 495-619 10-127 (170)
138 4gt6_A Cell surface protein; l 99.5 1.5E-12 5E-17 136.8 22.7 323 17-356 53-390 (394)
139 2r9u_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 127.5 10.3 105 497-604 15-119 (174)
140 1a9n_A U2A', U2A'; complex (nu 99.5 7E-14 2.4E-18 128.8 9.2 84 495-580 65-154 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.5E-18 127.7 9.4 134 365-556 15-154 (176)
142 4gt6_A Cell surface protein; l 99.5 2.7E-12 9.3E-17 134.7 21.6 79 495-578 312-390 (394)
143 3g39_A Variable lymphocyte rec 99.5 3.1E-13 1E-17 123.5 11.3 90 494-583 30-119 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 1.7E-15 5.9E-20 142.7 -5.7 152 368-579 17-185 (198)
145 2r9u_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 121.1 11.3 90 494-583 33-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.4 2.4E-15 8.2E-20 141.6 -6.4 155 389-603 14-185 (198)
147 2ifg_A High affinity nerve gro 99.4 2.8E-13 9.6E-18 139.9 6.0 113 498-618 12-126 (347)
148 4h09_A Hypothetical leucine ri 99.3 1.7E-10 5.9E-15 120.4 22.0 300 23-341 42-352 (379)
149 3un9_A NLR family member X1; l 99.3 3.2E-13 1.1E-17 139.6 -0.8 62 79-140 73-139 (372)
150 3un9_A NLR family member X1; l 99.3 4.4E-13 1.5E-17 138.6 -0.8 139 151-289 101-255 (372)
151 2ifg_A High affinity nerve gro 99.2 6.5E-12 2.2E-16 129.5 7.9 113 493-606 30-144 (347)
152 4h09_A Hypothetical leucine ri 99.2 2.1E-09 7.1E-14 112.1 22.8 66 509-575 277-342 (379)
153 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.7E-14 109.7 5.5 182 22-211 134-341 (362)
154 2ra8_A Uncharacterized protein 98.8 6.6E-09 2.3E-13 106.3 8.4 203 79-308 108-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 4.2E-08 1.4E-12 90.4 -0.2 45 386-430 29-78 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 4.7E-07 1.6E-11 83.3 4.6 38 176-213 121-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 8E-07 2.8E-11 85.9 6.0 61 494-556 170-234 (267)
158 3rw6_A Nuclear RNA export fact 98.2 2.2E-07 7.6E-12 89.8 0.2 83 499-583 148-237 (267)
159 3e4g_A ATP synthase subunit S, 98.0 1.8E-06 6.3E-11 77.1 3.0 84 78-162 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1E-06 3.5E-11 78.8 1.1 84 494-577 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.9 1.8E-06 6.3E-11 73.8 0.7 49 567-620 32-80 (130)
162 3rfe_A Platelet glycoprotein I 97.2 0.00056 1.9E-08 58.2 6.5 55 498-554 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00044 1.5E-08 63.0 4.3 87 126-212 69-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0005 1.7E-08 62.6 3.9 112 124-236 38-168 (197)
165 2lz0_A Uncharacterized protein 80.8 1.7 5.8E-05 34.3 4.3 49 11-62 5-53 (100)
166 2lz0_A Uncharacterized protein 56.9 26 0.00089 27.3 6.2 47 505-552 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-70 Score=624.61 Aligned_cols=617 Identities=30% Similarity=0.427 Sum_probs=495.1
Q ss_pred CCCCcEEeCCCCCCCCCCCc-ccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccc--------
Q 040184 1 MTSLRVLSLDLNQLTGNISS-SPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESS-------- 71 (699)
Q Consensus 1 l~~L~~L~ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------- 71 (699)
+++|++|+|++|.++|.+|. ..++.+++|++|+|++|.+.+.++...+.++++|++|++++|.+....+..
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 35677777777777655543 136667777777777776665555443355666666666666554322111
Q ss_pred ---------------cCCCCCccccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCC
Q 040184 72 ---------------HSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRN 136 (699)
Q Consensus 72 ---------------~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~ 136 (699)
.....+.+|++|++++|.+++.+|. +.++++|++|++++|.+++.+|..+ .++++|++|++++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISS 256 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCS
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCC
Confidence 1113455889999999988887776 8899999999999999987777764 8899999999999
Q ss_pred CcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCcc
Q 040184 137 NSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEI 216 (699)
Q Consensus 137 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 216 (699)
|.+.+..|.. .+++|++|++++|++++.+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+++.+
T Consensus 257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 9998876654 88999999999999998899988887789999999999999999999999999999999999999899
Q ss_pred chHHhhcCCCCcEEEccCCcCCccCcccccCCC-CCcEEEccCCcCCccCCccCcC--CCCCceEECCCCcCcCcCchhh
Q 040184 217 PEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLR-KLVSLHLDANYFTGEIPKSLSN--CSHLEGLYMSDNNLYGNIPAWL 293 (699)
Q Consensus 217 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~ 293 (699)
|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++..+..+.. +++|+.|++++|++++..|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 988777899999999999999888899888887 9999999999999888887776 8899999999999999999999
Q ss_pred hccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCcc
Q 040184 294 GNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIV 372 (699)
Q Consensus 294 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 372 (699)
.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ .+++|+.|++++|.+.+.++.. +..+++|+
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~ 493 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLN 493 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCC
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCC
Confidence 999999999999999999999999999999999999999998887766 7899999999999998888776 89999999
Q ss_pred EEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL 452 (699)
Q Consensus 373 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (699)
+|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|+.|++++|+++|.+|..+...............
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999877653211100000000
Q ss_pred -cccccc--------------cccccccCCCCcccccceeEEeeccee--eeeCCCCCCcccEEEccCCccCccCCcccc
Q 040184 453 -VPAFNH--------------NVRSTYSAGSSTMEKEESIMFTTKEIS--FSYKGKPLNKMYGVDLSCNKLTGEIPPQIS 515 (699)
Q Consensus 453 -~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 515 (699)
...... ....................+...... .......+++|+.||+++|++++.+|..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 000000 000000000000000000000000000 011223468899999999999999999999
Q ss_pred ccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCC
Q 040184 516 KLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKED 595 (699)
Q Consensus 516 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~ 595 (699)
.+++|+.|+|++|++++.+|..++++++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|+. .++.++...
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~ 732 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPA 732 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGG
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 478899999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 040184 596 SYEGNPLLCGKPLPDCDVAAVPEASNEE 623 (699)
Q Consensus 596 ~~~~Np~~C~~~~~~c~~~~~~~~~~~~ 623 (699)
++.|||.+||.|++.|.......|+...
T Consensus 733 ~~~gN~~Lcg~~l~~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 733 KFLNNPGLCGYPLPRCDPSNADGYAHHQ 760 (768)
T ss_dssp GGCSCTEEESTTSCCCCSCC--------
T ss_pred HhcCCchhcCCCCcCCCCCccCCCCCCC
Confidence 9999999999999899988887887444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8e-65 Score=582.50 Aligned_cols=591 Identities=27% Similarity=0.365 Sum_probs=407.4
Q ss_pred CCCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCc-ccccCCCCCcEEEcccCccccccccccCCCCCcc
Q 040184 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSL-EPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQ 79 (699)
Q Consensus 1 l~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~ 79 (699)
|+.|+.++++.+.+. .++. .|+.+++|++|+|++|.++|.++. ..+.++++|++|++++|.+....+... ...+.+
T Consensus 76 L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~ 152 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG-GLKLNS 152 (768)
T ss_dssp CTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS-CCCCTT
T ss_pred cCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH-hccCCC
Confidence 467788888888776 5566 699999999999999999987764 268999999999999998875543322 244568
Q ss_pred ccEEEccCCcCccccchh---cCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEE
Q 040184 80 LESVALSGSGIHATFPKF---LYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTL 156 (699)
Q Consensus 80 L~~L~ls~~~i~~~~~~~---l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 156 (699)
|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+..|. +..+++|++|
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 228 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEE
Confidence 999999999999888877 88999999999999999876653 6889999999999999887776 8899999999
Q ss_pred EccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc
Q 040184 157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236 (699)
Q Consensus 157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 236 (699)
++++|++++.+|..+.. +++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..++..+++|++|++++|.
T Consensus 229 ~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 229 DISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp ECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred ECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 99999998777776655 788999999988888766654 778888888888888777777766545788888888888
Q ss_pred CCccCcccccCCCCCcEEEccCCcCCccCCcc-CcCCCCCceEECCCCcCcCcCchhhhccC-CCcEEeccCCcccccCC
Q 040184 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKS-LSNCSHLEGLYMSDNNLYGNIPAWLGNLS-SLYDIMMASNHLQGPIP 314 (699)
Q Consensus 237 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~ 314 (699)
+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++.+..|..+.+++ +|+.|++++|.+.+..|
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 87777777888888888888888877666644 77777777777777777766676666655 56666666655554444
Q ss_pred --------------------------ccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccC
Q 040184 315 --------------------------LEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFN 367 (699)
Q Consensus 315 --------------------------~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~ 367 (699)
..+..+++|++|++++|.+.+..|..+ .+++|+.|++++|.+.+.++.. +..
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~ 464 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMY 464 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcC
Confidence 444444444555555444444444333 3445555555555554444433 445
Q ss_pred CCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCc-cC--
Q 040184 368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL-HN-- 444 (699)
Q Consensus 368 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~-~~-- 444 (699)
+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+..+.- ..
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 555555555555555555555555555555555555555555555555555555555555555555544443220 00
Q ss_pred CC-CCCCCCcccccccccccccCCCCcccccceeEEeeccee---------eeeCC------CCCCcccEEEccCCccCc
Q 040184 445 NG-DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS---------FSYKG------KPLNKMYGVDLSCNKLTG 508 (699)
Q Consensus 445 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~------~~l~~L~~L~Ls~n~l~~ 508 (699)
.. ......++......... .................... ..+.+ ..++.+..++++.|.+.+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGK--IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTC--BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred CCCCccCCcCChHHhcccch--hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 00 00000000000000000 00000000000000000000 00000 112333445566677777
Q ss_pred cCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcC
Q 040184 509 EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQ 588 (699)
Q Consensus 509 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 588 (699)
.+|..+..+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|..+..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 77777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCCCC
Q 040184 589 FTTFKEDSYEGNPLLC 604 (699)
Q Consensus 589 ~~~l~~~~~~~Np~~C 604 (699)
++.|+.+++++|++..
T Consensus 703 l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCCCSEEECCSSEEEE
T ss_pred CCCCCEEECcCCcccc
Confidence 9999999999998865
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.3e-60 Score=536.56 Aligned_cols=556 Identities=22% Similarity=0.240 Sum_probs=355.8
Q ss_pred CCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184 3 SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES 82 (699)
Q Consensus 3 ~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~ 82 (699)
++++|++++|.++ .++...|.++++|++|++++|.+++ ++...|.++++|++|++++|.+....... +..+.+|++
T Consensus 26 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~ 101 (680)
T 1ziw_A 26 NITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTE 101 (680)
T ss_dssp TCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTT--TTTCTTCSE
T ss_pred CCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhh--hccCCCCCE
Confidence 5666666666666 3444356666666666666666653 33345666666666666666665433222 234446666
Q ss_pred EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCC--CCCCCCEEEccC
Q 040184 83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQ--PHWHLDTLYVSK 160 (699)
Q Consensus 83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~ 160 (699)
|++++|.+++..+..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 666666666665566666666666666666666443333 35666666666666666554443322 345666666666
Q ss_pred ccCCccCchhhhh--------------------------cCCCCcEEeCcCCcccccCCccccCCCC--CCEEEccCCcC
Q 040184 161 NFFQGNIPLEIGV--------------------------YFPRLVYLNLSRNDFNGSIPSSIGDMNS--LEALDLSHNQL 212 (699)
Q Consensus 161 n~i~~~~~~~~~~--------------------------~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L~~n~l 212 (699)
|++++..|..+.. ..++|+.|++++|.+.+..|..+..++. |++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 6665433322211 0134555556666555555555555433 66666666666
Q ss_pred CCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCc-----cCC----ccCcCCCCCceEECCCC
Q 040184 213 TGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTG-----EIP----KSLSNCSHLEGLYMSDN 283 (699)
Q Consensus 213 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-----~~~----~~~~~l~~L~~L~l~~n 283 (699)
+ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|...+ .+| ..|..+++|+.|++++|
T Consensus 261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 261 N-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp C-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred C-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 5 3333333455666666666666655555556666666666665543321 111 24555666666666666
Q ss_pred cCcCcCchhhhccCCCcEEeccCCcccc--cCCccccCC--CCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccc
Q 040184 284 NLYGNIPAWLGNLSSLYDIMMASNHLQG--PIPLEFCQL--NYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYG 358 (699)
Q Consensus 284 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~ 358 (699)
.+.+..+..|.++++|+.|++++|.+.. .....|..+ ++|+.|++++|++.+..+..+ .+++|+.|++++|.+.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 6665555556666666666666654321 111222222 356666666666665555444 56666666666666655
Q ss_pred cCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCC--CCCCcccCCCCCCCEEECcCCcccccCCCc
Q 040184 359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE--GEVPIQLCRLKQLRLIDLSNNNIFGQIPGC 436 (699)
Q Consensus 359 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~ 436 (699)
.++...|.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 555444666666666666666666666666666666666666666654 345566666666667777666666554444
Q ss_pred cccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC-----
Q 040184 437 LDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP----- 511 (699)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----- 511 (699)
+.. +++|+.|++++|.+++..+
T Consensus 500 ~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 500 LEG-----------------------------------------------------LEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTT-----------------------------------------------------CTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hcc-----------------------------------------------------ccccCEEeCCCCCccccchhhccC
Confidence 433 4589999999999986422
Q ss_pred ---ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCc-
Q 040184 512 ---PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTA- 587 (699)
Q Consensus 512 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~- 587 (699)
..|.++++|++|+|++|+++.+.+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+.
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 606 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc
Confidence 2478999999999999999977777899999999999999999987777889999999999999999998887665
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCC-CCCCCCCCc
Q 040184 588 QFTTFKEDSYEGNPLLCGKPLPDCDV-AAVPEASNE 622 (699)
Q Consensus 588 ~~~~l~~~~~~~Np~~C~~~~~~c~~-~~~~~~~~~ 622 (699)
.+++++.+++++|||.| +|+. .|+..|...
T Consensus 607 ~~~~L~~l~l~~N~~~c-----~c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 607 AFRNLTELDMRFNPFDC-----TCESIAWFVNWINE 637 (680)
T ss_dssp HHTTCSEEECTTCCCCB-----CCCCCSSEECCSSC
T ss_pred cccccCEEEccCCCccc-----CCccHHHHHHHHHh
Confidence 67899999999999999 8986 888888743
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-55 Score=500.26 Aligned_cols=532 Identities=20% Similarity=0.173 Sum_probs=446.5
Q ss_pred CCCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccc
Q 040184 1 MTSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQL 80 (699)
Q Consensus 1 l~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L 80 (699)
+++|++|++++|.+++..+. +|+++++|++|+|++|.++ .++...|.++++|++|++++|.+....+.. +..+.+|
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L 123 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKNL 123 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCT--TTTCTTC
T ss_pred CCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhH--ccccCCC
Confidence 47899999999999955555 8999999999999999998 678778999999999999999987654433 3566699
Q ss_pred cEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhh-hhCCCCCCEEEcCCCcCcccCCCCCCCC---------
Q 040184 81 ESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWL-LENNTNLNTLVLRNNSLSGPFRMPIQPH--------- 150 (699)
Q Consensus 81 ~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--------- 150 (699)
++|++++|.+++..+..+.++++|++|++++|.+++..+..+ +..+++|++|++++|.+.+..+..+..+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 999999999999999999999999999999999985554432 1356899999999999998877766544
Q ss_pred ------------------CCCCEEEccCccCCccCchhhhhcC--CCCcEEeCcCCcccccCCccccCCCCCCEEEccCC
Q 040184 151 ------------------WHLDTLYVSKNFFQGNIPLEIGVYF--PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHN 210 (699)
Q Consensus 151 ------------------~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 210 (699)
++|+.|++++|.+++..|..+.. + ++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence 56788888888888665655544 4 35999999999999888899999999999999999
Q ss_pred cCCCccchHHhhcCCCCcEEEccCCcCCc-----cCc----ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECC
Q 040184 211 QLTGEIPEHLAMSCFNLEFLVLSENSLLG-----QLF----SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMS 281 (699)
Q Consensus 211 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 281 (699)
.+++ ++...+.++++|++|++++|...+ .+| ..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 283 ~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 283 NIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred ccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 9984 444445689999999999875432 222 267889999999999999999888999999999999999
Q ss_pred CCcCcC--cCchhhhcc--CCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCC--CCCCCCccEEEccCcc
Q 040184 282 DNNLYG--NIPAWLGNL--SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPS--CSSHSSITQVHLSKNM 355 (699)
Q Consensus 282 ~n~l~~--~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~~~L~~L~l~~n~ 355 (699)
+|.+.. ..+..|..+ ++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.++. +..+++|++|++++|.
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 997542 223334433 5899999999999999999999999999999999999876653 3388999999999999
Q ss_pred ccccCCcccccCCCCccEEECCCCCCC--CCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC
Q 040184 356 LYGPLRYGTFFNRSSIVTLDLSYNSFS--GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI 433 (699)
Q Consensus 356 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~ 433 (699)
+.+..+.. |..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..
T Consensus 442 l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 442 YLQLTRNS-FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp EEECCTTT-TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred cceeChhh-hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence 87655544 889999999999999987 467889999999999999999999888888999999999999999998654
Q ss_pred CCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCcc
Q 040184 434 PGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ 513 (699)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 513 (699)
+..+..... .....+++|+.|++++|+++...+..
T Consensus 521 ~~~~~~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 521 KHANPGGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp STTSTTSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hhhccCCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 332211000 00023579999999999999666667
Q ss_pred ccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccc-cCCCCCeeecccCcCcccCCC
Q 040184 514 ISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV-ELNALAFFSVAHNNLSGKIPE 584 (699)
Q Consensus 514 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~~~ 584 (699)
|.++++|++|+|++|+++++.+..|..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999999999988888899999999999999999988887777 789999999999999998874
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-56 Score=519.89 Aligned_cols=526 Identities=19% Similarity=0.175 Sum_probs=413.5
Q ss_pred cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184 5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA 84 (699)
Q Consensus 5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 84 (699)
+..+.++++++ .+|. ..++|++|||++|.++ .+....|.++++|++|++++|...... ....+..+.+|++|+
T Consensus 7 ~~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSS-CCCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCC-CCCC----CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEE
Confidence 46788888888 7775 4578999999999998 455567899999999999998553322 122345666899999
Q ss_pred ccCCcCccccchhcCCCCCCCEEEcccCccccccchh-hhhCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCEEEccCcc
Q 040184 85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNW-LLENNTNLNTLVLRNNSLSGPFR-MPIQPHWHLDTLYVSKNF 162 (699)
Q Consensus 85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~ 162 (699)
|++|.+.+..|.+|.++++|++|++++|.+++.+|.. .+.++++|++|++++|.+.+..+ ..++++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 9999998888999999999999999999998755543 35789999999999999887654 468899999999999999
Q ss_pred CCccCchhhhhcC--CCCcEEeCcCCcccccCCccccCCCC------CCEEEccCCcCCCccchHHhhc--CCCCcEEEc
Q 040184 163 FQGNIPLEIGVYF--PRLVYLNLSRNDFNGSIPSSIGDMNS------LEALDLSHNQLTGEIPEHLAMS--CFNLEFLVL 232 (699)
Q Consensus 163 i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L 232 (699)
+++..+..+.. + ++|+.|++++|.+.+..|..+..+++ |+.|++++|.+++.++..+... ..+++.+.+
T Consensus 160 i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 160 IFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred CCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 98766666654 3 68999999999998888877776665 9999999998887776665432 256788887
Q ss_pred cCC---------cCCccCcccccCC--CCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcE
Q 040184 233 SEN---------SLLGQLFSKKNYL--RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYD 301 (699)
Q Consensus 233 ~~n---------~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 301 (699)
+.+ .+.......|.++ ++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..|.++++|+.
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 633 2222333444443 67899999999988888888888999999999999988887888888899999
Q ss_pred EeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCC
Q 040184 302 IMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNS 380 (699)
Q Consensus 302 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~ 380 (699)
|++++|.+.+..+..|..+++|+.|++++|.+....+..+ .+++|+.|++++|.+.+ +..+++|+.|++++|+
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNK 392 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCC
Confidence 9999999888888888899999999999998876666544 68889999999988854 3337788999999998
Q ss_pred CCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccc
Q 040184 381 FSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHN 459 (699)
Q Consensus 381 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (699)
++.. |.. ..+++.|++++|++.+... ..+..+++|+.|++++|++++..+....
T Consensus 393 l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------- 447 (844)
T 3j0a_A 393 LVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP--------------------- 447 (844)
T ss_dssp CCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------------
T ss_pred cccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------------
Confidence 8743 332 4678899999998885432 3356788999999999988754332110
Q ss_pred ccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccC-----ccCCccccccCccCeEEccCCcCcccC
Q 040184 460 VRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-----GEIPPQISKLTRIRALNLSHNNLTGVI 534 (699)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 534 (699)
..+++|+.|++++|.++ +..+..|.++++|++|+|++|++++.+
T Consensus 448 -------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 448 -------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp -------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred -------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 12457888999999886 344566888899999999999999888
Q ss_pred CccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCC
Q 040184 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCG 605 (699)
Q Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~ 605 (699)
|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++..|..+ ..++.+++++|||.|.
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 88889999999999999999877666665 789999999999998888754 5778888999999993
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-56 Score=497.31 Aligned_cols=541 Identities=19% Similarity=0.216 Sum_probs=448.3
Q ss_pred cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184 5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA 84 (699)
Q Consensus 5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 84 (699)
+.++.++..++ .+|. .+. +++++|++++|.++ .+++..|.++++|++|++++|.+....+.. +..+.+|++|+
T Consensus 15 ~~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~ 87 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLV 87 (606)
T ss_dssp TEEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTT--TTTCTTCCEEE
T ss_pred ceEECCCCCcc-cCcC-CCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhh--ccCccccCeee
Confidence 56888888888 7887 443 48999999999998 566678999999999999999987765444 35566999999
Q ss_pred ccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCC
Q 040184 85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQ 164 (699)
Q Consensus 85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~ 164 (699)
+++|.+++..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+.....+..+++|++|++++|+++
T Consensus 88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 9999999999999999999999999999998533333 589999999999999999865555666999999999999998
Q ss_pred ccCchhhhhcCCCCc--EEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC----
Q 040184 165 GNIPLEIGVYFPRLV--YLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL---- 238 (699)
Q Consensus 165 ~~~~~~~~~~~~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---- 238 (699)
+..+..+. .+++|+ +|++++|.+.+..|..+.. .+|+.|++++|. .++... ..+.+++...+....+.
T Consensus 167 ~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 167 YLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp EECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCTTSCC
T ss_pred ccChhhhh-hhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHh-hhccccchhheechhhccccc
Confidence 54444444 478999 8999999999877777654 689999999986 233332 34555544444332221
Q ss_pred -ccCcccccCCC--CCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCc
Q 040184 239 -GQLFSKKNYLR--KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPL 315 (699)
Q Consensus 239 -~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 315 (699)
...+..+..+. +|++|++++|.+++..+..|+.+++|+.|++++|+++ .+|..+.++++|+.|++++|.+.+..|.
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh
Confidence 12223333333 7899999999999888888999999999999999988 6777888899999999999999888888
Q ss_pred cccCCCCCcEEEcccccCcccCCCC--CCCCCccEEEccCccccccC--CcccccCCCCccEEECCCCCCCCCcChhhhc
Q 040184 316 EFCQLNYLQILDLSENNISGSLPSC--SSHSSITQVHLSKNMLYGPL--RYGTFFNRSSIVTLDLSYNSFSGYIPYWIER 391 (699)
Q Consensus 316 ~~~~l~~L~~L~l~~n~i~~~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 391 (699)
.+..+++|++|++++|.+.+..+.. ..+++|++|++++|.+.+.. +. .+..+++|++|++++|.+.+..+..+..
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 8999999999999999888655542 37899999999999986654 33 3888999999999999999888999999
Q ss_pred CCCCCEEEcccCcCCCCCCc-ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCc
Q 040184 392 LTYLRYLILANNNLEGEVPI-QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSST 470 (699)
Q Consensus 392 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (699)
+++|++|++++|++.+..+. .+..+++|+.|++++|.+.+..|..+..
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------- 447 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG------------------------------- 447 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-------------------------------
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-------------------------------
Confidence 99999999999999876554 4889999999999999998777766544
Q ss_pred ccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc---CCccccccCccCeEEccCCcCcccCCccccCCCCCCEE
Q 040184 471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE---IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL 547 (699)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 547 (699)
+++|+.|++++|++++. .+..+..+++|++|++++|++++..|..|+.+++|++|
T Consensus 448 ----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 448 ----------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp ----------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ----------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 45899999999999863 33668999999999999999999999999999999999
Q ss_pred eCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184 548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 620 (699)
Q Consensus 548 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~ 620 (699)
+|++|++++..|..+..+++| .|++++|++++..|..+..+++++.+++++||+.| +|+..|+..|.
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-----~c~~~~~~~w~ 572 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEWY 572 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC-----SGGGHHHHHHH
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc-----cCCcHHHHHHH
Confidence 999999999999999999999 99999999999988888888999999999999999 88876666655
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-55 Score=490.36 Aligned_cols=541 Identities=18% Similarity=0.162 Sum_probs=451.5
Q ss_pred CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184 4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV 83 (699)
Q Consensus 4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L 83 (699)
-++++.++++++ .+|. .+. ++|++|++++|.++ .++...|.++++|++|++++|.+....+.. +..+.+|++|
T Consensus 13 ~~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~--~~~l~~L~~L 85 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKA--WHGLHHLSNL 85 (606)
T ss_dssp TTEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEE
T ss_pred CCceEccCCCcc-cCCC-CCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHH--hhchhhcCEe
Confidence 357899999998 8887 343 89999999999998 566677999999999999999988765443 3556699999
Q ss_pred EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcc-cCCCCCCCCCCCCEEEccCcc
Q 040184 84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNF 162 (699)
Q Consensus 84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~ 162 (699)
++++|.+++..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+ .+|..++++++|++|++++|+
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99999999999999999999999999999998433344 6899999999999999986 468889999999999999999
Q ss_pred CCccCchhhhhcCCC----CcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184 163 FQGNIPLEIGVYFPR----LVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238 (699)
Q Consensus 163 i~~~~~~~~~~~~~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 238 (699)
+++..+..+.. +++ +++|++++|.+++..+..+... +|++|++++|.+.+......+.+++.++.+++..+.+.
T Consensus 165 l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 165 IQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred ceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 98655544433 334 4589999999997766666555 89999999999875555555678999999988765443
Q ss_pred c------cCcccccCCC--CCcEEEc-cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184 239 G------QLFSKKNYLR--KLVSLHL-DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309 (699)
Q Consensus 239 ~------~~~~~~~~l~--~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 309 (699)
. ..+..+..+. .++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC
Confidence 2 1112222222 4666777 67778877776 8999999999999999974 55 788899999999999999
Q ss_pred cccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccC--CcccccCCCCccEEECCCCCCCCCcCh
Q 040184 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPL--RYGTFFNRSSIVTLDLSYNSFSGYIPY 387 (699)
Q Consensus 310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 387 (699)
+.+| .+ .+++|+.|++++|...+.. ....+++|+.|++++|.+.+.. +.. +..+++|++|++++|.+++ .|.
T Consensus 320 -~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 320 -KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYS-DLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp -SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHH-HHCCSCCCEEECCSCSEEE-ECC
T ss_pred -cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhh-hccCCcccEeECCCCcccc-chh
Confidence 5677 45 8999999999999766544 4448899999999999987652 443 7899999999999999885 557
Q ss_pred hhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccC
Q 040184 388 WIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSA 466 (699)
Q Consensus 388 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (699)
.+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------- 446 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------------------------- 446 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC---------------------------
Confidence 88999999999999999998777 68899999999999999999888776654
Q ss_pred CCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCc-cCCccccccCccCeEEccCCcCcccCCccccCCCCCC
Q 040184 467 GSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE 545 (699)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 545 (699)
+++|+.|++++|.+++ .+|..+..+++|++|+|++|++++..|..|+.+++|+
T Consensus 447 --------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 447 --------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp --------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred --------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 3589999999999997 4788999999999999999999999999999999999
Q ss_pred EEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCC-CCCCCccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 040184 546 SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFT-TFKEDSYEGNPLLCGKPLPDCDVAAVPEASNE 622 (699)
Q Consensus 546 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~~~ 622 (699)
+|++++|++++..|..+..+++|++|++++|+++. +|..+..++ +++.+++++||+.| +|+..|+..|...
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c-----~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVAC-----ICEHQKFLQWVKE 572 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCC-----SSTTHHHHTTTTT
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCccc-----CCccHHHHHHHHc
Confidence 99999999999889999999999999999999994 565577776 59999999999999 8988887777643
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-54 Score=483.97 Aligned_cols=515 Identities=19% Similarity=0.180 Sum_probs=436.4
Q ss_pred CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184 2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE 81 (699)
Q Consensus 2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 81 (699)
+++++|++++|.++ .+++.+|+++++|++|+|++|.+.+ +.+..|.++++|++|++++|.+....+.. +..+.+|+
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~ 108 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKALK 108 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTT--TSSCTTCC
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhh--hccccccc
Confidence 46899999999999 5544489999999999999999984 55577999999999999999998765444 35566999
Q ss_pred EEEccCCcCccccchhcCCCCCCCEEEcccCccccc-cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCC--EEEc
Q 040184 82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD--TLYV 158 (699)
Q Consensus 82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~L~l 158 (699)
+|++++|.+++..+..+.++++|++|++++|.+++. .|.. ..+++|++|++++|.+.+..+..+..+++|+ .|++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG--FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT--CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc--cCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 999999999988888899999999999999999852 2433 4699999999999999988888889999999 8999
Q ss_pred cCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCC----CccchHHhhcCC--CCcEEEc
Q 040184 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLT----GEIPEHLAMSCF--NLEFLVL 232 (699)
Q Consensus 159 ~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~--~L~~L~L 232 (699)
++|.+++..| ..+. ..+|+.|++++|.. .+..+..+..++...+....+. ..++...+..+. +|++|++
T Consensus 187 ~~n~l~~~~~-~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 187 NGNDIAGIEP-GAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp TTCCCCEECT-TTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred CCCccCccCh-hHhh-hccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 9999985444 4454 35899999999872 3444555555544433322221 134444444443 7999999
Q ss_pred cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccccc
Q 040184 233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP 312 (699)
Q Consensus 233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 312 (699)
++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 999999888888999999999999999999 6788899999999999999999988888999999999999999998865
Q ss_pred CCc-cccCCCCCcEEEcccccCcccC--CC-CCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcC-h
Q 040184 313 IPL-EFCQLNYLQILDLSENNISGSL--PS-CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIP-Y 387 (699)
Q Consensus 313 ~~~-~~~~l~~L~~L~l~~n~i~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~ 387 (699)
++. .+..+++|++|++++|.+.+.. +. ...+++|+.|++++|.+.+..+.. +..+++|++|++++|.+++..+ .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCC
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccch
Confidence 554 5889999999999999998764 43 348899999999999997765554 8899999999999999987654 4
Q ss_pred hhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC-C--CccccCCccCCCCCCCCCcccccccccccc
Q 040184 388 WIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI-P--GCLDNTSLHNNGDNDDSLVPAFNHNVRSTY 464 (699)
Q Consensus 388 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (699)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.. + ..+.
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------------------------- 473 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ-------------------------- 473 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG--------------------------
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc--------------------------
Confidence 5889999999999999999888999999999999999999997632 1 2222
Q ss_pred cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184 465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544 (699)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 544 (699)
.+++|+.|++++|++++..|..|..+++|++|+|++|++++..|..+..+++|
T Consensus 474 ---------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 474 ---------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp ---------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred ---------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 25699999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184 545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 545 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
+|++++|++++..|..+..+++|+.|++++|++.|.++
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999888899999999999999999998776
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-53 Score=494.36 Aligned_cols=516 Identities=21% Similarity=0.194 Sum_probs=433.3
Q ss_pred CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184 2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE 81 (699)
Q Consensus 2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 81 (699)
+++++|+|++|.+++..+. .|.++++|++|+|++|...+.+++.+|.++++|++|+|++|.+....+..+ ..+.+|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~ 100 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF--QGLFHLF 100 (844)
T ss_dssp TTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS--CSCSSCC
T ss_pred CCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc--cCCcccC
Confidence 6899999999999954455 899999999999999977678877889999999999999999987655443 5666999
Q ss_pred EEEccCCcCccccchh--cCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCC--CCCCEEE
Q 040184 82 SVALSGSGIHATFPKF--LYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPH--WHLDTLY 157 (699)
Q Consensus 82 ~L~ls~~~i~~~~~~~--l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~ 157 (699)
+|++++|.+++..+.. +.++++|++|++++|.+++..+...|.++++|++|++++|.+.+..+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 9999999998866654 89999999999999999866554556999999999999999998888888877 8999999
Q ss_pred ccCccCCccCchhhhhcCC------CCcEEeCcCCcccccCCccccCC---CCCCEEEccCCc---------CCCccchH
Q 040184 158 VSKNFFQGNIPLEIGVYFP------RLVYLNLSRNDFNGSIPSSIGDM---NSLEALDLSHNQ---------LTGEIPEH 219 (699)
Q Consensus 158 l~~n~i~~~~~~~~~~~~~------~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~---------l~~~~~~~ 219 (699)
+++|.+.+..|..+.. ++ .|++|++++|.+.+..+..+... ..++.|.++.+. +. .....
T Consensus 181 L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~ 258 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQN 258 (844)
T ss_dssp ECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST-TGGGT
T ss_pred CCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC-CCChh
Confidence 9999998777765443 23 49999999999887777766543 578888887433 22 22233
Q ss_pred HhhcC--CCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccC
Q 040184 220 LAMSC--FNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS 297 (699)
Q Consensus 220 ~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 297 (699)
.+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+.+|..+++|+.|++++|.+++..+..|.+++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 33333 7899999999999988899999999999999999999988899999999999999999999988889999999
Q ss_pred CCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECC
Q 040184 298 SLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLS 377 (699)
Q Consensus 298 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls 377 (699)
+|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.. .+++|+.+++++|++.. ++. ...+++.++++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~~-l~~----~~~~l~~L~ls 409 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVT-LPK----INLTANLIHLS 409 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCCC-CCC----CCTTCCEEECC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCccc-ccc----cccccceeecc
Confidence 9999999999999888888999999999999999998432 27889999999999963 332 25679999999
Q ss_pred CCCCCCCc-ChhhhcCCCCCEEEcccCcCCCCCCc-ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccc
Q 040184 378 YNSFSGYI-PYWIERLTYLRYLILANNNLEGEVPI-QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPA 455 (699)
Q Consensus 378 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (699)
+|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-.
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~-------------- 475 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV-------------- 475 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC--------------
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh--------------
Confidence 99998754 33456899999999999999865443 466789999999999999744332111000
Q ss_pred ccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCC
Q 040184 456 FNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP 535 (699)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 535 (699)
...+++|+.|+|++|.+++..|..|..+++|++|+|++|++++.++
T Consensus 476 ----------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 476 ----------------------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp ----------------------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred ----------------------------------hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccCh
Confidence 0235689999999999999999999999999999999999998888
Q ss_pred ccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCC
Q 040184 536 VTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584 (699)
Q Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 584 (699)
..+. ++|+.|+|++|++++..|..+ ++|+.+++++|++.|.++-
T Consensus 522 ~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 522 NDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred hhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 7776 899999999999999888765 4799999999999998773
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-52 Score=471.31 Aligned_cols=512 Identities=18% Similarity=0.172 Sum_probs=434.8
Q ss_pred CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184 2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE 81 (699)
Q Consensus 2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 81 (699)
+++++|++++|.++ .++..+|.++++|++|++++|.++ .+++..|.++++|++|++++|.+....+..+ ..+.+|+
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSS--TTCTTCC
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhc--CCcccCC
Confidence 57999999999999 454448999999999999999998 5655779999999999999999987655443 5566999
Q ss_pred EEEccCCcCccccchhcCCCCCCCEEEcccCcccc-ccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCC----EE
Q 040184 82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG-EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLD----TL 156 (699)
Q Consensus 82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L 156 (699)
+|++++|.+++..+..++++++|++|++++|.+++ .+|.. +.++++|++|++++|.+.+..+..++.+++|+ +|
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 99999999998888889999999999999999985 56776 48999999999999999998888888777665 89
Q ss_pred EccCccCCccCchhhhhcCCCCcEEeCcCCccc-ccCCccccCCCCCCEEEccCCcCCC-----ccchHHhhcCC--CCc
Q 040184 157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFN-GSIPSSIGDMNSLEALDLSHNQLTG-----EIPEHLAMSCF--NLE 228 (699)
Q Consensus 157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~--~L~ 228 (699)
++++|+++ .++...+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+ .++...+..+. .++
T Consensus 187 ~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 187 DMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp ECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 99999998 6677777644 8999999999986 4677889999999998886554331 22233322222 466
Q ss_pred EEEc-cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCC
Q 040184 229 FLVL-SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307 (699)
Q Consensus 229 ~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 307 (699)
.+++ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|
T Consensus 265 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC
T ss_pred heeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC
Confidence 7777 66777777776 889999999999999997 455 789999999999999999 4677 45 8999999999999
Q ss_pred cccccCCccccCCCCCcEEEcccccCcccC--CCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCC
Q 040184 308 HLQGPIPLEFCQLNYLQILDLSENNISGSL--PSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY 384 (699)
Q Consensus 308 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 384 (699)
...+.. .+..+++|++|++++|.+.+.. +..+ .+++|+.|++++|.+.+ ++ ..+..+++|+.|++++|.+.+.
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEEST
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCc
Confidence 655433 5778999999999999998652 3333 78999999999999865 33 3488999999999999999988
Q ss_pred cC-hhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc-cCCCccccCCccCCCCCCCCCcccccccccc
Q 040184 385 IP-YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG-QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS 462 (699)
Q Consensus 385 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (699)
.+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|++++ .+|..+..
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------- 471 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN----------------------- 471 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------------------
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-----------------------
Confidence 77 688999999999999999998899999999999999999999987 36665544
Q ss_pred cccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCC
Q 040184 463 TYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN 542 (699)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 542 (699)
+++|+.|++++|++++..|..|..+++|++|+|++|++++..|..|..++
T Consensus 472 ------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 472 ------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp ------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred ------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 45999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeCCCCcccccCCcccccCC-CCCeeecccCcCcccCCC
Q 040184 543 QVESLDISYNNLNGKIPPQLVELN-ALAFFSVAHNNLSGKIPE 584 (699)
Q Consensus 543 ~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~~~ 584 (699)
+|++|++++|+++ .+|..+..++ +|++|++++|++.|.++.
T Consensus 522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999 6777788987 599999999999987774
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-49 Score=439.61 Aligned_cols=519 Identities=19% Similarity=0.185 Sum_probs=371.7
Q ss_pred CcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEE
Q 040184 4 LRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESV 83 (699)
Q Consensus 4 L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L 83 (699)
.++++.++.+++ .+|. .+ .+++++|++++|.++ .++...|.++++|++|++++|.+....+.. +..+.+|++|
T Consensus 9 ~~~~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~--~~~l~~L~~L 81 (570)
T 2z63_A 9 NITYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTL 81 (570)
T ss_dssp TTEEECCSSCCS-SCCS-SS--CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTT--TTTCTTCCEE
T ss_pred CcEEEeCCCCcc-ccCC-Cc--cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCccc--ccCchhCCEE
Confidence 356788888887 7776 33 368999999999987 455567888888999988888876654333 3455578888
Q ss_pred EccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCcc
Q 040184 84 ALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNF 162 (699)
Q Consensus 84 ~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~ 162 (699)
++++|.+++..+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+.+. .|..+.++++|++|++++|+
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred eCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 88888887777778888888888888888877 44443357788888888888877763 56777778888888888888
Q ss_pred CCccCchhhhhcCCCC----cEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184 163 FQGNIPLEIGVYFPRL----VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238 (699)
Q Consensus 163 i~~~~~~~~~~~~~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 238 (699)
+++..+..+.. +++| ++|++++|.+.+..|..+... +|+.|++++|.............++.++...+....+.
T Consensus 161 l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 238 (570)
T 2z63_A 161 IQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238 (570)
T ss_dssp CCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC
T ss_pred cceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc
Confidence 77444443433 5566 778888888777766666655 67888887775443222233345666666655433221
Q ss_pred ccCcccccCCCCCcEEEccCCcCCccCCccCcCCC--CCceEECCCC-cCcCcCchhhhccCCCcEEeccCCcccccCCc
Q 040184 239 GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCS--HLEGLYMSDN-NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPL 315 (699)
Q Consensus 239 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 315 (699)
. ..+++. .....+..++ .++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|.
T Consensus 239 ~--------~~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~ 299 (570)
T 2z63_A 239 N--------EGNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD 299 (570)
T ss_dssp C--------CSSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB
T ss_pred C--------chhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh
Confidence 1 111111 1111122222 2455566655 555566666777777777777777766 4566
Q ss_pred cccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc--ChhhhcCC
Q 040184 316 EFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI--PYWIERLT 393 (699)
Q Consensus 316 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~l~ 393 (699)
.+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..++
T Consensus 300 ~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 373 (570)
T 2z63_A 300 FSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373 (570)
T ss_dssp CCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred hhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccC
Confidence 66666 7777777777776 3333 3566777777777776554432 56788888888888887654 67788888
Q ss_pred CCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCC-CccccCCccCCCCCCCCCcccccccccccccCCCCccc
Q 040184 394 YLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIP-GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTME 472 (699)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (699)
+|++|++++|++.+..+. +..+++|+.|++++|.+.+..| ..+.
T Consensus 374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 418 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL---------------------------------- 418 (570)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT----------------------------------
T ss_pred ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh----------------------------------
Confidence 999999999888754444 8888899999999988876544 2222
Q ss_pred ccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCc-ccCCccccCCCCCCEEeCCC
Q 040184 473 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT-GVIPVTFSNLNQVESLDISY 551 (699)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~ 551 (699)
.+++|+.|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++
T Consensus 419 -------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 419 -------------------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp -------------------TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred -------------------cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 2458888999999988888888888999999999999887 56788888899999999999
Q ss_pred CcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 040184 552 NNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAV 616 (699)
Q Consensus 552 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~ 616 (699)
|++++..|..+..+++|++|++++|++++..|..+..+++++.+++++||+.| +|+..|.
T Consensus 480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~~~~ 539 (570)
T 2z63_A 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-----SCPRIDY 539 (570)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----CTTTTHH
T ss_pred CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC-----CCcchHH
Confidence 99988888888889999999999999988888888888888999999999998 6765544
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-47 Score=428.25 Aligned_cols=493 Identities=18% Similarity=0.185 Sum_probs=367.0
Q ss_pred CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184 2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE 81 (699)
Q Consensus 2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 81 (699)
+++++|++++|.++ .++..+|..+++|++|++++|.++ .++...|.++++|++|++++|.+....+.. +..+.+|+
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQ 103 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCC
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhh--hcCccccc
Confidence 46899999999999 555448999999999999999998 566678999999999999999987765443 35566999
Q ss_pred EEEccCCcCccccchhcCCCCCCCEEEcccCcccc-ccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCC----CEE
Q 040184 82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKG-EFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHL----DTL 156 (699)
Q Consensus 82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L----~~L 156 (699)
+|++++|.+++..+..++++++|++|++++|.+++ .+|..+ .++++|++|++++|.+.+..+..+..+++| +.+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 99999999988877789999999999999999985 467764 899999999999999998878888888888 899
Q ss_pred EccCccCCccCchhhhhcCCCCcEEeCcCCcccc-cCCccccCCCCCCEEEccCCcCCC-----ccchHHhhcCC--CCc
Q 040184 157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTG-----EIPEHLAMSCF--NLE 228 (699)
Q Consensus 157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~--~L~ 228 (699)
++++|.+++ ++...+... +|+.|++++|.... ..+..+..++.++.+.+....+.. .++...+..+. .++
T Consensus 183 ~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 183 DLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp ECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred ccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 999999984 444555534 89999999985432 455667788888877665432220 22222222222 234
Q ss_pred EEEccCC-cCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCC
Q 040184 229 FLVLSEN-SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307 (699)
Q Consensus 229 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 307 (699)
.++++++ .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---------------- 321 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---------------- 321 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB----------------
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc----------------
Confidence 4444444 333444444555555555555555554 344444444 5555555555544 2222
Q ss_pred cccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCC-cccccCCCCccEEECCCCCCCCCcC
Q 040184 308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLR-YGTFFNRSSIVTLDLSYNSFSGYIP 386 (699)
Q Consensus 308 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~ 386 (699)
..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... ...+..+++|++|++++|.+.+..+
T Consensus 322 ----------~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (570)
T 2z63_A 322 ----------LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390 (570)
T ss_dssp ----------CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred ----------ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence 2344455555555544433322 344555555555555543220 1236778899999999998886555
Q ss_pred hhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184 387 YWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS 465 (699)
Q Consensus 387 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (699)
. +..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 391 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------- 443 (570)
T 2z63_A 391 N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------- 443 (570)
T ss_dssp E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------
T ss_pred c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------------------------
Confidence 5 8889999999999999886655 56888999999999999998777766544
Q ss_pred CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccC-ccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184 466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT-GEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544 (699)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 544 (699)
+++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|
T Consensus 444 ---------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 444 ---------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp ---------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ---------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 358999999999997 5688899999999999999999999989999999999
Q ss_pred CEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCC
Q 040184 545 ESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEW 585 (699)
Q Consensus 545 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 585 (699)
++|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999888888999999999999999999998863
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.3e-47 Score=419.63 Aligned_cols=391 Identities=18% Similarity=0.162 Sum_probs=218.0
Q ss_pred cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184 5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA 84 (699)
Q Consensus 5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 84 (699)
.+.+.+++.++ .+|. .+. ++|++|++++|.+++ ++...|.+++ +|++|+
T Consensus 8 ~~c~~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~-~~~~~~~~l~--------------------------~L~~L~ 56 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPS-GLT--AAMKSLDLSFNKITY-IGHGDLRACA--------------------------NLQVLI 56 (549)
T ss_dssp SEEECTTSCCS-SCCS-CCC--TTCCEEECCSSCCCE-ECSSTTSSCT--------------------------TCCEEE
T ss_pred ceEECCCCccc-cccc-cCC--CCccEEECcCCccCc-cChhhhhcCC--------------------------cccEEE
Confidence 34555666665 5555 222 566666666666652 3323444444 455555
Q ss_pred ccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCccC
Q 040184 85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNFF 163 (699)
Q Consensus 85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i 163 (699)
+++|.+++..|.+|.++++|++|++++|.+++ ++...+.++++|++|++++|.+.+. .+..+..+++|++|++++|.+
T Consensus 57 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred CCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence 55555555556667777777777777777774 3333346777777777777777653 455677777888888877774
Q ss_pred CccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC--
Q 040184 164 QGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL-- 241 (699)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-- 241 (699)
.+.+|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|...+..+++|++|++++|.+.+..
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc
Confidence 44666544455778888888888888777888888888888888888776 677766666788888888888776532
Q ss_pred -cccccCCCCCcEEEccCCcCCccCC----ccCcCCCCCceEECCCCcCcCcC------chhhhccCCCcEEeccCCccc
Q 040184 242 -FSKKNYLRKLVSLHLDANYFTGEIP----KSLSNCSHLEGLYMSDNNLYGNI------PAWLGNLSSLYDIMMASNHLQ 310 (699)
Q Consensus 242 -~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~ 310 (699)
......+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+..+++|+.|.+.++.+.
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 294 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS
T ss_pred ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence 1222345667777777776654322 23345566666666666654321 112233445555555554433
Q ss_pred cc-----CCccccCCCCCcEEEcccccCcccCCCCC--CCCCccEEEccCccccccCC--cccccCCCCccEEECCCCCC
Q 040184 311 GP-----IPLEFCQLNYLQILDLSENNISGSLPSCS--SHSSITQVHLSKNMLYGPLR--YGTFFNRSSIVTLDLSYNSF 381 (699)
Q Consensus 311 ~~-----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~--~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~Ls~n~i 381 (699)
.. .+..+...++|+.|++++|.+. .+|... .+++|+.|++++|.+.+..+ ...+..+++|++|++++|++
T Consensus 295 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 373 (549)
T 2z81_A 295 QFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373 (549)
T ss_dssp CGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred hhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence 11 0111122234455555555443 222111 23444444444444433221 11133444555555555555
Q ss_pred CCCcC--hhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCccc
Q 040184 382 SGYIP--YWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIF 430 (699)
Q Consensus 382 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~ 430 (699)
++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred cccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 43321 23444555555555555554 34444444555555555555543
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-46 Score=422.46 Aligned_cols=539 Identities=18% Similarity=0.158 Sum_probs=424.0
Q ss_pred EEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEc
Q 040184 6 VLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVAL 85 (699)
Q Consensus 6 ~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l 85 (699)
+.+-++.+++ .+|. .+ -+++++|||++|+|+ .++..+|.++++|++|+|++|.+....+.. +..+.+|++|+|
T Consensus 35 ~~~c~~~~l~-~vP~-~l--p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--f~~L~~L~~L~L 107 (635)
T 4g8a_A 35 TYQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLIL 107 (635)
T ss_dssp EEECTTSCCS-SCCS-SS--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEEC
T ss_pred EEECCCCCcC-ccCC-CC--CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhH--hcCCCCCCEEEc
Confidence 4566777787 7776 23 258999999999998 677778999999999999999987765443 356668999999
Q ss_pred cCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCccCC
Q 040184 86 SGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNFFQ 164 (699)
Q Consensus 86 s~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~ 164 (699)
++|++++..+.+|.++++|++|++++|.++ .++...|.++++|++|++++|.+.+. .|..+..+++|++|++++|+++
T Consensus 108 s~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 108 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999998888889999999999999999998 56665578999999999999998764 5667888999999999999998
Q ss_pred ccCchhhhhcCC----CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcC---
Q 040184 165 GNIPLEIGVYFP----RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSL--- 237 (699)
Q Consensus 165 ~~~~~~~~~~~~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l--- 237 (699)
+..+..+.. ++ ....++++.|.+....+..+ ....++.+++.+|.....++...+..+..++...+..+..
T Consensus 187 ~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 187 SIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp EECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ccccccccc-hhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 555544432 33 34578899999886555544 4456778899888776566666667788888777654332
Q ss_pred ---CccCcccccCCCCCcEEEccCCcCCc---cCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc
Q 040184 238 ---LGQLFSKKNYLRKLVSLHLDANYFTG---EIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311 (699)
Q Consensus 238 ---~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 311 (699)
.......+.....+...++..+.... .....+..+.+++.+.+.++.+... ..+....+++.|++.+|.+..
T Consensus 265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 342 (635)
T 4g8a_A 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ 342 (635)
T ss_dssp CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESS
T ss_pred cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccC
Confidence 22233444555666666665443321 2334566678899999988887643 235667889999999998875
Q ss_pred cCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCcccccc--CCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184 312 PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGP--LRYGTFFNRSSIVTLDLSYNSFSGYIPYWI 389 (699)
Q Consensus 312 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 389 (699)
..+ ..++.|+.+++..|.+.. .+....+++|+.+++++|.+... .+. .+..+.+|+.+++..+.+.. .+..+
T Consensus 343 ~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~ 416 (635)
T 4g8a_A 343 FPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNF 416 (635)
T ss_dssp CCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCC
T ss_pred cCc---ccchhhhhcccccccCCC-Ccccccccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccc
Confidence 544 346788899999888763 34445788999999999987532 232 25678899999999988764 45567
Q ss_pred hcCCCCCEEEcccCcCCCCC-CcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCC
Q 040184 390 ERLTYLRYLILANNNLEGEV-PIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGS 468 (699)
Q Consensus 390 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (699)
..+++|+.++++.++..... ...+..+++++.+++++|.+.+..+..+..
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~----------------------------- 467 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------------------- 467 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------
T ss_pred cccccccchhhhhcccccccccccccccccccccccccccccccccccccc-----------------------------
Confidence 78999999999998876544 456788999999999999998777665543
Q ss_pred CcccccceeEEeecceeeeeCCCCCCcccEEEccCCcc-CccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEE
Q 040184 469 STMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKL-TGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESL 547 (699)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 547 (699)
++.++.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|+++++|++|
T Consensus 468 ------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 468 ------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp ------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 35899999999985 44678889999999999999999999999999999999999
Q ss_pred eCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC-CCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184 548 DISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF-TTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 620 (699)
Q Consensus 548 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~ 620 (699)
+|++|+|++..|..|..+++|++|++++|++++..|+.+..+ ++++.+++++|||.| +|+..|+..|.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C-----~C~~~~~~~wl 592 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC-----TCEHQSFLQWI 592 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC-----SGGGHHHHHHH
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc-----cCCcHHHHHHH
Confidence 999999999889999999999999999999999999998877 689999999999999 99988887775
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-47 Score=425.64 Aligned_cols=288 Identities=21% Similarity=0.213 Sum_probs=153.4
Q ss_pred CccccccchhhhhCCCCCCEEEcCCCcCccc-----------------CCCCCC--CCCCCCEEEccCccCCccCchhhh
Q 040184 112 SNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-----------------FRMPIQ--PHWHLDTLYVSKNFFQGNIPLEIG 172 (699)
Q Consensus 112 n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~ 172 (699)
|.+++ +|..+ .++++|++|+|++|.+++. +|..+. ++++|++|++++|++.+.+|..+.
T Consensus 193 n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 34443 44442 4555555555555555543 455555 555555555555555555554444
Q ss_pred hcCCCCcEEeCcCCc-ccc-cCCccccCC------CCCCEEEccCCcCCCccch-HHhhcCCCCcEEEccCCcCCccCcc
Q 040184 173 VYFPRLVYLNLSRND-FNG-SIPSSIGDM------NSLEALDLSHNQLTGEIPE-HLAMSCFNLEFLVLSENSLLGQLFS 243 (699)
Q Consensus 173 ~~~~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 243 (699)
. +++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. ..+..+++|++|++++|.+.+.+|
T Consensus 271 ~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 A-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp T-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred c-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 3 4555555555555 554 455544443 55555666555555 5554 122345556666666665555555
Q ss_pred cccCCCCCcEEEccCCcCCccCCccCcCCCC-CceEECCCCcCcCcCchhhhccC--CCcEEeccCCcccccCCcccc--
Q 040184 244 KKNYLRKLVSLHLDANYFTGEIPKSLSNCSH-LEGLYMSDNNLYGNIPAWLGNLS--SLYDIMMASNHLQGPIPLEFC-- 318 (699)
Q Consensus 244 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~-- 318 (699)
.+..+++|++|++++|.++ .+|..+..+++ |+.|++++|+++ .+|..+...+ +|+.|++++|.+.+..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 5555566666666666665 45555666666 666666666665 4455444433 566666666666665555555
Q ss_pred -----CCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc--
Q 040184 319 -----QLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER-- 391 (699)
Q Consensus 319 -----~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~-- 391 (699)
.+++|+.|++++|.+.+ +| ...+..+++|++|++++|+++...+..+..
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~-lp-----------------------~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISK-FP-----------------------KELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCS-CC-----------------------THHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred ccccccCCCCCEEECcCCccCc-CC-----------------------HHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 55566666666666552 11 111233444444444444444222222222
Q ss_pred -----CCCCCEEEcccCcCCCCCCcccC--CCCCCCEEECcCCcccc
Q 040184 392 -----LTYLRYLILANNNLEGEVPIQLC--RLKQLRLIDLSNNNIFG 431 (699)
Q Consensus 392 -----l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~i~~ 431 (699)
+++|++|++++|+++ .+|..+. .+++|+.|++++|++++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 226666666666666 4555554 56666666666666654
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-46 Score=412.19 Aligned_cols=462 Identities=19% Similarity=0.161 Sum_probs=374.5
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEc
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYV 158 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 158 (699)
+|++|++++|.+++..|..|.++++|++|++++|.+++..|.. |.++++|++|++++|.+.+..+..++.+++|++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 6888999999988888889999999999999999999544444 589999999999999999887777999999999999
Q ss_pred cCccCCc-cCchhhhhcCCCCcEEeCcCCc-ccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc
Q 040184 159 SKNFFQG-NIPLEIGVYFPRLVYLNLSRND-FNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS 236 (699)
Q Consensus 159 ~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 236 (699)
++|++++ ..|..+ ..+++|++|++++|. +....+..+..+++|++|++++|.+++.+|..+ ..+++|++|++++|.
T Consensus 106 s~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 106 MGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSB
T ss_pred CCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEecccCc
Confidence 9999985 234444 448899999999998 554445789999999999999999996667665 479999999999998
Q ss_pred CCccCcccccCCCCCcEEEccCCcCCccC--C-ccCcCCCCCceEECCCCcCcCcCch----hhhccCCCcEEeccCCcc
Q 040184 237 LLGQLFSKKNYLRKLVSLHLDANYFTGEI--P-KSLSNCSHLEGLYMSDNNLYGNIPA----WLGNLSSLYDIMMASNHL 309 (699)
Q Consensus 237 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~ 309 (699)
+.......+..+++|++|++++|.+++.. + .....+++|+.|++++|.+.+..+. .+..+++|+.+++++|.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 86444344467899999999999998642 1 2334578999999999988765443 345678999999999988
Q ss_pred cccC------CccccCCCCCcEEEcccccCcccCCC--C----CCCCCccEEEccCccccccCCcccccCCCCccEEECC
Q 040184 310 QGPI------PLEFCQLNYLQILDLSENNISGSLPS--C----SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLS 377 (699)
Q Consensus 310 ~~~~------~~~~~~l~~L~~L~l~~n~i~~~~~~--~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls 377 (699)
.+.. ...+..+++|+.+++.++.+...... . ....+|+.+++++|.+. .++...+..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 7532 23356788999999999887642110 0 02468999999999985 5666645689999999999
Q ss_pred CCCCCCCcCh---hhhcCCCCCEEEcccCcCCCCCC--cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184 378 YNSFSGYIPY---WIERLTYLRYLILANNNLEGEVP--IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL 452 (699)
Q Consensus 378 ~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (699)
+|++++..+. .+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------- 408 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW------------- 408 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-------------
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-------------
Confidence 9999876543 36788999999999999985432 45888999999999999997 45544332
Q ss_pred cccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc
Q 040184 453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG 532 (699)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 532 (699)
+++|+.|++++|++++ +|..+ .++|++|+|++|++++
T Consensus 409 ----------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 409 ----------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDS 445 (549)
T ss_dssp ----------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSC
T ss_pred ----------------------------------------cccccEEECCCCCccc-ccchh--cCCceEEECCCCChhh
Confidence 4589999999999984 44433 3689999999999996
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCC
Q 040184 533 VIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 612 (699)
Q Consensus 533 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~ 612 (699)
.+ ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|..+..++.++.+++++||+.| +|.
T Consensus 446 ~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~ 514 (549)
T 2z81_A 446 FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-----SCP 514 (549)
T ss_dssp CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC-----CHH
T ss_pred hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC-----CCc
Confidence 53 57899999999999999 6665 4679999999999999999999888899999999999999999 675
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.1e-47 Score=422.79 Aligned_cols=437 Identities=17% Similarity=0.233 Sum_probs=251.8
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCcc------cc------ccchhhhhCCCCCCEEEcCCCcCcccCCCC
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNL------KG------EFLNWLLENNTNLNTLVLRNNSLSGPFRMP 146 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~------~~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 146 (699)
+++.|+|+++.+.+.+|..++++++|++|++++|.+ .+ .+|... +..|+ ++++.+.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 688999999999888888999999999999998865 12 233222 12233 333333333322222
Q ss_pred CCC-------------------CCCCCEEEcc--CccCCccCchhhhhcCCCCcEEeCcCCccccc--------------
Q 040184 147 IQP-------------------HWHLDTLYVS--KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-------------- 191 (699)
Q Consensus 147 ~~~-------------------l~~L~~L~l~--~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-------------- 191 (699)
+.. ...++.+.+. .|++++ +|..+.. +++|++|+|++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence 210 0111111111 344554 5555444 45566666666555543
Q ss_pred ---CCcccc--CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc-CCc-cCcccccCC------CCCcEEEccC
Q 040184 192 ---IPSSIG--DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS-LLG-QLFSKKNYL------RKLVSLHLDA 258 (699)
Q Consensus 192 ---~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~ 258 (699)
+|..++ ++++|++|++++|.+.+.+|..+. ++++|++|++++|. +.+ .+|..+..+ ++|++|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 555555 566666666666655555554442 45566666666665 554 455544443 5666666666
Q ss_pred CcCCccCCc--cCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCC-CcEEEcccccCcc
Q 040184 259 NYFTGEIPK--SLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY-LQILDLSENNISG 335 (699)
Q Consensus 259 n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~ 335 (699)
|.++ .+|. .++.+++|+.|++++|++++.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 6666 4555 56666666666666666665555 5556666666666666665 45555666666 666666666665
Q ss_pred cCCCCC-C--CCCccEEEccCccccccCCccccc-------CCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcC
Q 040184 336 SLPSCS-S--HSSITQVHLSKNMLYGPLRYGTFF-------NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNL 405 (699)
Q Consensus 336 ~~~~~~-~--~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 405 (699)
.+|..+ . +++|+.|++++|.+.+..+.. +. .+++|++|++++|+++...+..+..+++|++|++++|++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 334333 1 225555666655555444433 33 455677777777777755455555677777777777777
Q ss_pred CCCCCcccCCC-------CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeE
Q 040184 406 EGEVPIQLCRL-------KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIM 478 (699)
Q Consensus 406 ~~~~~~~~~~l-------~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (699)
+...+..+... ++|+.|++++|+++ .+|..+..
T Consensus 470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------------------- 509 (636)
T 4eco_A 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------------------------- 509 (636)
T ss_dssp SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST---------------------------------------
T ss_pred CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh---------------------------------------
Confidence 63322233222 26777777777766 44433320
Q ss_pred EeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEc------cCCcCcccCCccccCCCCCCEEeCCCC
Q 040184 479 FTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL------SHNNLTGVIPVTFSNLNQVESLDISYN 552 (699)
Q Consensus 479 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N 552 (699)
..+++|+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|
T Consensus 510 ------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 510 ------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp ------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 013466677777777765 6666666777777777 345566666666666777777777777
Q ss_pred cccccCCcccccCCCCCeeecccCcCcccCC
Q 040184 553 NLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 553 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
++. .+|..+. ++|+.|++++|++.+...
T Consensus 577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 577 DIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 773 5555544 567777777776665443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-46 Score=412.10 Aligned_cols=463 Identities=19% Similarity=0.200 Sum_probs=246.6
Q ss_pred cEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEc
Q 040184 55 KVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVL 134 (699)
Q Consensus 55 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~L 134 (699)
++|++++|.++..+... + .+|++|++++|.+++..|..|.++++|++|++++|.+++..|.. |.++++|++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~----~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL----S-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSC----C-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEEC
T ss_pred ceEecCCCCcccccccc----c-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEec
Confidence 35666666665433211 1 35666666666666666666666666666666666666433433 356666666666
Q ss_pred CCCcCcccCCCCCCCCCCCCEEEccCccCCc-cCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCC--CEEEccCCc
Q 040184 135 RNNSLSGPFRMPIQPHWHLDTLYVSKNFFQG-NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSL--EALDLSHNQ 211 (699)
Q Consensus 135 s~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~n~ 211 (699)
++|++... |.. .+++|++|++++|++++ .+|..+.. +++|++|++++|.+.+ ..+..+++| +.|++++|.
T Consensus 77 s~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 77 SHNKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred CCCceeec-Ccc--ccCCccEEeccCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 66666542 222 45566666666666553 23344433 4555556555555543 234444444 555555555
Q ss_pred C--CCccchHHhhcCC-CCcEEEccCCcCCccCc-ccccCCCCCcEEEccCCc-------CCccCCccCcCCCCCceEEC
Q 040184 212 L--TGEIPEHLAMSCF-NLEFLVLSENSLLGQLF-SKKNYLRKLVSLHLDANY-------FTGEIPKSLSNCSHLEGLYM 280 (699)
Q Consensus 212 l--~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~l 280 (699)
+ .+..|..+. .+. +...+++++|.+.+..+ ..+..+++|+.+++++|. +.+..+ .+..+++|+.|++
T Consensus 150 l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l 227 (520)
T 2z7x_B 150 TYGEKEDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL 227 (520)
T ss_dssp TTTSSCCTTTTT-TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred cccccccccccc-ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccc
Confidence 5 333333221 111 12234444444433222 233445555555555543 332222 3444555555555
Q ss_pred CCCcCcCcCchhhh---ccCCCcEEeccCCcccccCCccc-----cCCCCCcEEEcccccCcccCCCCCCCCCccEEEcc
Q 040184 281 SDNNLYGNIPAWLG---NLSSLYDIMMASNHLQGPIPLEF-----CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLS 352 (699)
Q Consensus 281 ~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~ 352 (699)
++|.+.+..+..+. ..++|+.|++++|.+.+.+|..+ ..+++|+.+++++|
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n--------------------- 286 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD--------------------- 286 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC---------------------
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc---------------------
Confidence 55444322111110 12345555555555544444444 44444444444444
Q ss_pred CccccccCCcccccCC---CCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcc
Q 040184 353 KNMLYGPLRYGTFFNR---SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429 (699)
Q Consensus 353 ~n~~~~~~~~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i 429 (699)
.+ .++...+..+ .+|+.|++++|.+..... ...+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 287 --~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 287 --VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp --CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred --ce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 44 2221112221 446666666666543221 13556666666666666655666666666666666666666
Q ss_pred cc--cCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccC
Q 040184 430 FG--QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLT 507 (699)
Q Consensus 430 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 507 (699)
++ .+|..+.. +++|+.|++++|.++
T Consensus 361 ~~l~~~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 361 KELSKIAEMTTQ-----------------------------------------------------MKSLQQLDISQNSVS 387 (520)
T ss_dssp CBHHHHHHHHTT-----------------------------------------------------CTTCCEEECCSSCCB
T ss_pred CccccchHHHhh-----------------------------------------------------CCCCCEEECCCCcCC
Confidence 53 22222221 346666666666666
Q ss_pred ccCCc-cccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCC
Q 040184 508 GEIPP-QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWT 586 (699)
Q Consensus 508 ~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 586 (699)
+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 53443 366677777777777777666555543 56777777777777 566666677777777777777774333336
Q ss_pred cCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCC
Q 040184 587 AQFTTFKEDSYEGNPLLCGKPLPDCDVAAV-PEAS 620 (699)
Q Consensus 587 ~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~-~~~~ 620 (699)
..+++++.+++++||+.| +|+..|+ ..|.
T Consensus 465 ~~l~~L~~L~l~~N~~~c-----~c~~~~~~~~~~ 494 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDC-----SCPRIDYLSRWL 494 (520)
T ss_dssp TTCTTCCEEECCSSCBCC-----CHHHHHHHHHHH
T ss_pred ccCCcccEEECcCCCCcc-----cCCchHHHHHHH
Confidence 666777777777777777 6665555 4443
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-46 Score=408.80 Aligned_cols=454 Identities=20% Similarity=0.188 Sum_probs=278.3
Q ss_pred cEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEE
Q 040184 5 RVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVA 84 (699)
Q Consensus 5 ~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 84 (699)
++||+++|+++ .+|. .+. ++|++|++++|.++ .++...|.++++|++|++++|.+..
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 59 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY------------------ 59 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCE------------------
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCC------------------
Confidence 57889999888 7776 344 88899999998887 4555667777777777666665543
Q ss_pred ccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcc-cCCCCCCCCCCCCEEEccCccC
Q 040184 85 LSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSG-PFRMPIQPHWHLDTLYVSKNFF 163 (699)
Q Consensus 85 ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i 163 (699)
..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+.+ ..|..++.+++|++|++++|++
T Consensus 60 --------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 60 --------LDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp --------EEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred --------cChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 34444555555555555555555 34432 45555555555555554 2344555555555555555555
Q ss_pred CccCchhhhhcCCCC--cEEeCcCCcc--cccCCccccCCC-CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc--
Q 040184 164 QGNIPLEIGVYFPRL--VYLNLSRNDF--NGSIPSSIGDMN-SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS-- 236 (699)
Q Consensus 164 ~~~~~~~~~~~~~~L--~~L~L~~n~i--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-- 236 (699)
++. . +..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 128 ~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 128 EKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp CGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred chh---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 431 1 1223444 6666666665 445555554443 122445566665555555555556666666666664
Q ss_pred -----CCccCcccccCCCCCcEEEccCCcCCccCCccC---cCCCCCceEECCCCcCcCcCchhh-----hccCCCcEEe
Q 040184 237 -----LLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSL---SNCSHLEGLYMSDNNLYGNIPAWL-----GNLSSLYDIM 303 (699)
Q Consensus 237 -----l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~ 303 (699)
+.+.++ .+..+++|+.|++++|.+.+..+..+ ...++|+.|++++|++.+.+|..+ ..+++|+.++
T Consensus 204 ~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~ 282 (520)
T 2z7x_B 204 NKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282 (520)
T ss_dssp TTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred cccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence 333333 55666677777776666553221111 013467777777777776666666 6777777777
Q ss_pred ccCCcccccCC-ccccCC---CCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCC
Q 040184 304 MASNHLQGPIP-LEFCQL---NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN 379 (699)
Q Consensus 304 l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n 379 (699)
+++|.+ .+| ..+..+ ++|+.|++++|.+.... . +..+++|++|++++|
T Consensus 283 l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~-------------------------~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 283 VVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-C-------------------------PSKISPFLHLDFSNN 334 (520)
T ss_dssp EEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-C-------------------------CSSCCCCCEEECCSS
T ss_pred ccccce--ecchhhhhcccccCceeEEEcCCCcccccc-c-------------------------hhhCCcccEEEeECC
Confidence 777776 333 333333 56777777777664211 0 134455666666666
Q ss_pred CCCCCcChhhhcCCCCCEEEcccCcCCC--CCCcccCCCCCCCEEECcCCcccccCCCc-cccCCccCCCCCCCCCcccc
Q 040184 380 SFSGYIPYWIERLTYLRYLILANNNLEG--EVPIQLCRLKQLRLIDLSNNNIFGQIPGC-LDNTSLHNNGDNDDSLVPAF 456 (699)
Q Consensus 380 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 456 (699)
++++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++.+|.. +.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~------------------ 396 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS------------------ 396 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC------------------
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc------------------
Confidence 6665555666666666666666666664 33455666666667777666666533321 11
Q ss_pred cccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCc
Q 040184 457 NHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPV 536 (699)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 536 (699)
.+++|+.|++++|++++..|..+. ++|++|++++|+++ .+|.
T Consensus 397 -----------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~ 438 (520)
T 2z7x_B 397 -----------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK 438 (520)
T ss_dssp -----------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred -----------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence 134667777777777665555543 67888888888888 6666
Q ss_pred cccCCCCCCEEeCCCCcccccCCc-ccccCCCCCeeecccCcCcccCC
Q 040184 537 TFSNLNQVESLDISYNNLNGKIPP-QLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 537 ~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
.+..+++|++|++++|+++. +|. .+..+++|++|++++|+++|.++
T Consensus 439 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 439 QVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 66788888888888888884 444 47888888888888888887665
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-45 Score=417.44 Aligned_cols=461 Identities=18% Similarity=0.228 Sum_probs=280.4
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEc-ccCccccccchhhhhCCCCCCE-----EE---------c-CCCcCc--
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDF-SDSNLKGEFLNWLLENNTNLNT-----LV---------L-RNNSLS-- 140 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~l-s~n~~~~~~~~~~~~~l~~L~~-----L~---------L-s~n~i~-- 140 (699)
+++.|+|+++++.+.+|..++++++|++|+| ++|.+.|..|.........+.. +. . ....+.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 6889999999999888989999999999999 7777665422110000000000 00 0 000000
Q ss_pred ---------ccCCCCCCCCCCCCEEEccC--ccCCccCchhhhhcCCCCcEEeCcCCcccc-----------------cC
Q 040184 141 ---------GPFRMPIQPHWHLDTLYVSK--NFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-----------------SI 192 (699)
Q Consensus 141 ---------~~~~~~~~~l~~L~~L~l~~--n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-----------------~~ 192 (699)
...+........++.+.+.. |++++ +|..+.. +++|++|+|++|.+++ .+
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00000001111122222221 33443 4444333 4444444444444443 24
Q ss_pred Ccccc--CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCc-CCc-cCcccccC-------CCCCcEEEccCCcC
Q 040184 193 PSSIG--DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENS-LLG-QLFSKKNY-------LRKLVSLHLDANYF 261 (699)
Q Consensus 193 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~i 261 (699)
|..++ ++++|++|++++|.+.+.+|..+ ..+++|++|++++|. +.+ .+|..+.. +++|++|++++|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 44444 55555555555555544555433 245555555555554 444 34433322 23556666666555
Q ss_pred CccCCc--cCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCC-CcEEEcccccCcccCC
Q 040184 262 TGEIPK--SLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNY-LQILDLSENNISGSLP 338 (699)
Q Consensus 262 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~ 338 (699)
+ .+|. .+..+++|+.|++++|+++ .+| .|+.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 5 4454 5555556666666665555 444 5555555666666666555 45555555555 666666666655 333
Q ss_pred CCC-CC--CCccEEEccCccccccCCcc--cc--cCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCc
Q 040184 339 SCS-SH--SSITQVHLSKNMLYGPLRYG--TF--FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI 411 (699)
Q Consensus 339 ~~~-~~--~~L~~L~l~~n~~~~~~~~~--~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 411 (699)
..+ .. ++|+.|++++|.+.+.++.- .+ ..+++|+.|++++|.++...+..+..+++|+.|++++|++. .+|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 333 11 23666666666655433211 01 13458999999999998554455568899999999999998 4444
Q ss_pred c-cCC-------CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecc
Q 040184 412 Q-LCR-------LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKE 483 (699)
Q Consensus 412 ~-~~~-------l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (699)
. +.. +++|+.|++++|+++ .+|..+..
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------------------------------------------- 749 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------------------------------------------- 749 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------------------------
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------------------------------
Confidence 3 332 238999999999987 55554430
Q ss_pred eeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccC------CcCcccCCccccCCCCCCEEeCCCCccccc
Q 040184 484 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH------NNLTGVIPVTFSNLNQVESLDISYNNLNGK 557 (699)
Q Consensus 484 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (699)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.
T Consensus 750 -------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~ 820 (876)
T 4ecn_A 750 -------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820 (876)
T ss_dssp -------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred -------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence 124689999999999996 788899999999999976 788889999999999999999999999 57
Q ss_pred CCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184 558 IPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 558 ~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
+|..+. ++|+.|++++|++....+..+..........+.+|+..+
T Consensus 821 Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 821 VDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred cCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 887765 699999999999988777666555556667777787765
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-45 Score=416.38 Aligned_cols=355 Identities=19% Similarity=0.203 Sum_probs=196.0
Q ss_pred CCCCCC--CCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCc-ccc-cCCccccCC-------CCCCEEEccCCc
Q 040184 143 FRMPIQ--PHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRND-FNG-SIPSSIGDM-------NSLEALDLSHNQ 211 (699)
Q Consensus 143 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~-~~~~~~~~l-------~~L~~L~L~~n~ 211 (699)
+|..++ ++++|++|++++|++.+.+|..+.. +++|++|+|++|+ +++ .+|..+..+ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 444444 5555555555555555555544443 4555555555554 444 444433332 255555555555
Q ss_pred CCCccch-HHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCC-CceEECCCCcCcCcC
Q 040184 212 LTGEIPE-HLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSH-LEGLYMSDNNLYGNI 289 (699)
Q Consensus 212 l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~ 289 (699)
++ .+|. ..+..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 55 5554 12234555566666555555 444 5555566666666666655 45555555555 666666666655 44
Q ss_pred chhhhccCC--CcEEeccCCcccccCCccc---c--CCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCC
Q 040184 290 PAWLGNLSS--LYDIMMASNHLQGPIPLEF---C--QLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLR 361 (699)
Q Consensus 290 ~~~~~~l~~--L~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~ 361 (699)
|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+....+..+ .+++|+.|++++|.+. .++
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 544444432 6666666666554433221 1 22355555555555542111111 2223333333333322 122
Q ss_pred ccccc-------CCCCccEEECCCCCCCCCcChhhh--cCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCccccc
Q 040184 362 YGTFF-------NRSSIVTLDLSYNSFSGYIPYWIE--RLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQ 432 (699)
Q Consensus 362 ~~~~~-------~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~ 432 (699)
...+. ++++|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---- 787 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---- 787 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----
Confidence 11111 1224555555555554 3344443 45555555555555553 34444455555555554443
Q ss_pred CCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCc
Q 040184 433 IPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP 512 (699)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 512 (699)
++++|.+.+.+|.
T Consensus 788 -------------------------------------------------------------------~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 788 -------------------------------------------------------------------DAEGNRILRQWPT 800 (876)
T ss_dssp -------------------------------------------------------------------CTTCCBCCCCCCT
T ss_pred -------------------------------------------------------------------CcccccccccChH
Confidence 1234778888999
Q ss_pred cccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184 513 QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580 (699)
Q Consensus 513 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 580 (699)
.+..+++|++|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++..
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 999999999999999999 57777765 699999999999987777777776677888888887654
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.7e-44 Score=402.10 Aligned_cols=513 Identities=19% Similarity=0.172 Sum_probs=408.1
Q ss_pred CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184 2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE 81 (699)
Q Consensus 2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 81 (699)
+++++|||++|.|+ .+++.+|.++++|++|+|++|+|+ .++..+|.++++|++|+|++|++....... +..+.+|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~--f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGG--GTTCTTCC
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHH--hcCCCCCC
Confidence 37899999999999 777668999999999999999998 677788999999999999999998765543 35566999
Q ss_pred EEEccCCcCccccchhcCCCCCCCEEEcccCccccc-cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCC----CCEE
Q 040184 82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWH----LDTL 156 (699)
Q Consensus 82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~----L~~L 156 (699)
+|++++|.+++..+..|+++++|++|++++|.+++. .|.. +..+++|++|++++|.+++..+..+..+.+ ...+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 999999999998888999999999999999999753 4444 588999999999999999887777765544 4478
Q ss_pred EccCccCCccCchhhhhcCCCCcEEeCcCCcccc-cCCccccCCCCCCEEEccCCcCCC-----ccchHHhhcCCCCcEE
Q 040184 157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG-SIPSSIGDMNSLEALDLSHNQLTG-----EIPEHLAMSCFNLEFL 230 (699)
Q Consensus 157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L 230 (699)
+++.|.+. .++...+.. ..++.+++.+|.... ..+..+..+..++...+..+.... ......+.....+...
T Consensus 207 ~ls~n~l~-~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 207 DLSLNPMN-FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp ECTTCCCC-EECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hcccCccc-ccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 89999987 556566553 367888888886542 344567778888777664332211 2222223345566666
Q ss_pred EccCCcCC---ccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCC
Q 040184 231 VLSENSLL---GQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASN 307 (699)
Q Consensus 231 ~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 307 (699)
++..+... ...+..+....+++.+++.++.+... ..+....+++.|++.+|.+....+ ..+..|+.+++..|
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN 359 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence 66554332 23344566678899999998887744 346667889999999998875443 34578889999988
Q ss_pred cccccCCccccCCCCCcEEEcccccCcccCCCC---CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCC
Q 040184 308 HLQGPIPLEFCQLNYLQILDLSENNISGSLPSC---SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY 384 (699)
Q Consensus 308 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 384 (699)
..... .....+++|+.+++++|.+....... ....+++.+++..+....... . +..+++|+.++++.+.....
T Consensus 360 ~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~-~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 360 KGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-N-FLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-C-CTTCTTCCEEECTTSEEEST
T ss_pred cCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-c-ccccccccchhhhhcccccc
Confidence 77643 33457899999999999886432221 267889999999988755332 2 77899999999998877654
Q ss_pred c-ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc-cCCCccccCCccCCCCCCCCCcccccccccc
Q 040184 385 I-PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG-QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS 462 (699)
Q Consensus 385 ~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (699)
. ...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------------------- 492 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------- 492 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------------------
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-----------------------
Confidence 4 4567889999999999999998888899999999999999998543 45555443
Q ss_pred cccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCC
Q 040184 463 TYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN 542 (699)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 542 (699)
+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+.++
T Consensus 493 ------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 493 ------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp ------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred ------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 45899999999999999999999999999999999999999999999999
Q ss_pred CCCEEeCCCCcccccCCcccccC-CCCCeeecccCcCcccCC
Q 040184 543 QVESLDISYNNLNGKIPPQLVEL-NALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 543 ~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~~ 583 (699)
+|++|||++|+|++..|..+..+ ++|++|++++|++.|.+.
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999999988 689999999999999776
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-42 Score=384.26 Aligned_cols=459 Identities=19% Similarity=0.175 Sum_probs=268.5
Q ss_pred ccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEcc
Q 040184 80 LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVS 159 (699)
Q Consensus 80 L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 159 (699)
.++++++++++++ +|..+. ++|++|++++|.+++ ++...|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3566666666654 333322 566666666666663 333234666666666666666666666666666666666666
Q ss_pred CccCCccCchhhhhcCCCCcEEeCcCCccccc-CCccccCCCCCCEEEccCCcCCCccchHHhhcCCCC--cEEEccCCc
Q 040184 160 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGS-IPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNL--EFLVLSENS 236 (699)
Q Consensus 160 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~ 236 (699)
+|+++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ .. +..+++| ++|++++|.
T Consensus 109 ~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 109 HNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESS
T ss_pred CCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeeccc
Confidence 66665 45544 356667777776666642 34566666777777777766652 11 1233444 777777766
Q ss_pred C--CccCcccccCCC-CCcEEEccCCcCCccCC-ccCcCCCCCceEECCCCcCc----CcCchhhhccCCCcEEeccCCc
Q 040184 237 L--LGQLFSKKNYLR-KLVSLHLDANYFTGEIP-KSLSNCSHLEGLYMSDNNLY----GNIPAWLGNLSSLYDIMMASNH 308 (699)
Q Consensus 237 l--~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~ 308 (699)
+ .+..|..+..+. ..-.+++++|.+.+..+ ..+..+++|+.|++++|+.. ......+..+++|+.+++.++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 6 555555554433 11144556666554333 23455666777777666311 0122345566666666666655
Q ss_pred ccccC----CccccCCCCCcEEEcccccCcccCCCCC------CCCCccEEEccCccccccCCccccc---CCCCccEEE
Q 040184 309 LQGPI----PLEFCQLNYLQILDLSENNISGSLPSCS------SHSSITQVHLSKNMLYGPLRYGTFF---NRSSIVTLD 375 (699)
Q Consensus 309 ~~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~ 375 (699)
+.+.. +.. ...++|++|++++|.+.+.+|... .+..|+.+++..+.+ .++...+. ...+|+.|+
T Consensus 261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 44221 111 122367777777777665554432 223333333333333 22211111 124577777
Q ss_pred CCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC--CCccccCCccCCCCCCCCCc
Q 040184 376 LSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI--PGCLDNTSLHNNGDNDDSLV 453 (699)
Q Consensus 376 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~--~~~~~~~~~~~~~~~~~~~~ 453 (699)
+++|.+..... ...+++|++|++++|++++..|..+..+++|+.|++++|++++.. |..+.
T Consensus 338 l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--------------- 400 (562)
T 3a79_B 338 ISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--------------- 400 (562)
T ss_dssp EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT---------------
T ss_pred ccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc---------------
Confidence 77777653321 146677777777777777666777777777777777777776421 22222
Q ss_pred ccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC-ccccccCccCeEEccCCcCcc
Q 040184 454 PAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP-PQISKLTRIRALNLSHNNLTG 532 (699)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 532 (699)
.+++|+.|++++|.+++.+| ..+..+++|++|++++|++++
T Consensus 401 --------------------------------------~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 401 --------------------------------------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp --------------------------------------TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred --------------------------------------CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 23477777777777776333 347777777777887777776
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCC
Q 040184 533 VIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD 612 (699)
Q Consensus 533 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~ 612 (699)
..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..++.++.+++++|||.| +|+
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-----~c~ 514 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCP 514 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC-----CHH
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC-----Ccc
Confidence 6555443 57777888888777 566655677778888888887775433336667777777788888877 665
Q ss_pred CCCC
Q 040184 613 VAAV 616 (699)
Q Consensus 613 ~~~~ 616 (699)
..|+
T Consensus 515 ~~~~ 518 (562)
T 3a79_B 515 GIRY 518 (562)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5444
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-42 Score=383.33 Aligned_cols=461 Identities=18% Similarity=0.145 Sum_probs=272.2
Q ss_pred CCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCC
Q 040184 26 LTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLE 105 (699)
Q Consensus 26 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~ 105 (699)
|...+++++++|.++ .+|.. +. ++|+.|++++|.+....+..+ ..+++|++|++++|.+++..|.+|.++++|+
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKD-LP--PRTKALSLSQNSISELRMPDI--SFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTT-SC--TTCCEEECCSSCCCCCCGGGT--TTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cCCCcEEEcCCCCCc-cCCCC-CC--CCcCEEECCCCCccccChhhh--ccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 334456666666665 34432 21 455555555555544332222 2333555555555555555555555555666
Q ss_pred EEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCC--cEEe
Q 040184 106 YVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL--VYLN 182 (699)
Q Consensus 106 ~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L--~~L~ 182 (699)
+|++++|.++ .+|.. .+++|++|++++|.+.+. .|..++++++|++|++++|++++.. + ..+++| ++|+
T Consensus 104 ~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~-~~l~~L~L~~L~ 175 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---L-LPVAHLHLSCIL 175 (562)
T ss_dssp EEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---T-GGGTTSCEEEEE
T ss_pred EEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---h-hhhhhceeeEEE
Confidence 6666665555 44432 455566666665555542 2345555555555555555554211 1 112333 5555
Q ss_pred CcCCcc--cccCCccccCCC--CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccC
Q 040184 183 LSRNDF--NGSIPSSIGDMN--SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA 258 (699)
Q Consensus 183 L~~n~i--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 258 (699)
+++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|.....
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------------------ 236 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ------------------ 236 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH------------------
T ss_pred eecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc------------------
Confidence 555555 444455444432 11 3344555544444433333444455555544421000
Q ss_pred CcCCccCCccCcCCCCCceEECCCCcCcCc----CchhhhccCCCcEEeccCCcccccCCccc-----cCCCCCcEEEcc
Q 040184 259 NYFTGEIPKSLSNCSHLEGLYMSDNNLYGN----IPAWLGNLSSLYDIMMASNHLQGPIPLEF-----CQLNYLQILDLS 329 (699)
Q Consensus 259 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~ 329 (699)
.+. .....+..+++|+.|+++++.+.+. .+..+ ..++|+.|++++|.+.+.+|..+ ..++.|+.++++
T Consensus 237 -~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~ 313 (562)
T 3a79_B 237 -RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313 (562)
T ss_dssp -HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred -hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence 011 0112234444555555544443321 11111 12356666666666665555554 444555555555
Q ss_pred cccCcccCCCC-----CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCc
Q 040184 330 ENNISGSLPSC-----SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNN 404 (699)
Q Consensus 330 ~n~i~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 404 (699)
.+.+ .+|.. +...+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred ccee--ecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 5444 11110 01245777777777663221 12567889999999999998888888899999999999999
Q ss_pred CCCCC--CcccCCCCCCCEEECcCCcccccCCCc-cccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEee
Q 040184 405 LEGEV--PIQLCRLKQLRLIDLSNNNIFGQIPGC-LDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTT 481 (699)
Q Consensus 405 l~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (699)
+++.. |..+..+++|+.|++++|++++.+|.. +.
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------------------------------------------- 425 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA------------------------------------------- 425 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-------------------------------------------
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-------------------------------------------
Confidence 98633 456888999999999999998745532 22
Q ss_pred cceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040184 482 KEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQ 561 (699)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 561 (699)
.+++|+.|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|..
T Consensus 426 ----------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~ 491 (562)
T 3a79_B 426 ----------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG 491 (562)
T ss_dssp ----------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTT
T ss_pred ----------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHH
Confidence 245899999999999876666554 79999999999999 566666699999999999999994 5554
Q ss_pred -cccCCCCCeeecccCcCcccCCC
Q 040184 562 -LVELNALAFFSVAHNNLSGKIPE 584 (699)
Q Consensus 562 -l~~l~~L~~L~l~~N~l~~~~~~ 584 (699)
+..+++|+.|++++|++.|.++.
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHhcCCCCCEEEecCCCcCCCcch
Confidence 89999999999999999987763
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-40 Score=356.15 Aligned_cols=378 Identities=21% Similarity=0.223 Sum_probs=240.0
Q ss_pred CEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEcc
Q 040184 154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLS 233 (699)
Q Consensus 154 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 233 (699)
+.++.+++.++ .+|. + .+++++|+|++|.+++..|..|.++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45666666666 5665 2 35888888888888887788888888899999988888767777666778888888888
Q ss_pred CCcCCccCcccccCCCCCcEEEccCCcCCccCCc--cCcCCCCCceEECCCCcCcCcCchh-hhccCCCcEEeccCCccc
Q 040184 234 ENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPK--SLSNCSHLEGLYMSDNNLYGNIPAW-LGNLSSLYDIMMASNHLQ 310 (699)
Q Consensus 234 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~ 310 (699)
+|.+.+..|..+.++++|++|++++|.+++..+. .+..+++|++|++++|++.+..|.. +.++++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 8888877788888888899999988888764443 4888888899999888888776665 788888888888888888
Q ss_pred ccCCccccCC--CCCcEEEcccccCcccCCCCC---------CCCCccEEEccCccccccCCccccc---CCCCccEEEC
Q 040184 311 GPIPLEFCQL--NYLQILDLSENNISGSLPSCS---------SHSSITQVHLSKNMLYGPLRYGTFF---NRSSIVTLDL 376 (699)
Q Consensus 311 ~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~L 376 (699)
+..+..+..+ .+|+.+++++|.+.+..+... ..++|+.|++++|.+.+..+.. +. ..++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEee
Confidence 7777777665 678888888888775443221 2344555555555444333222 11 1244555555
Q ss_pred CCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC--CCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcc
Q 040184 377 SYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC--RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVP 454 (699)
Q Consensus 377 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (699)
++|...+.... .+.+.+..+..+. ..++|+.|++++|.+++..|..+..
T Consensus 247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH--------------- 297 (455)
T ss_dssp TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT---------------
T ss_pred ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhccc---------------
Confidence 54433221000 0001101111111 1245555666666555554444332
Q ss_pred cccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccC
Q 040184 455 AFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI 534 (699)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 534 (699)
+++|+.|++++|.+++..|..|..+++|++|+|++|++++..
T Consensus 298 --------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 298 --------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp --------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 235555666666665555555556666666666666665555
Q ss_pred CccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
|..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++++.+++++||+.|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 5555666666666666666655555555666666666666666655555555555566666666666666
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-39 Score=351.28 Aligned_cols=367 Identities=19% Similarity=0.175 Sum_probs=221.5
Q ss_pred CCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEE
Q 040184 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALD 206 (699)
Q Consensus 127 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 206 (699)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 44555555555555544555555555555555555554444444444455566666666665555555666666666666
Q ss_pred ccCCcCCCccchH-HhhcCCCCcEEEccCCcCCccCccc-ccCCCCCcEEEccCCcCCccCCccCcCC--CCCceEECCC
Q 040184 207 LSHNQLTGEIPEH-LAMSCFNLEFLVLSENSLLGQLFSK-KNYLRKLVSLHLDANYFTGEIPKSLSNC--SHLEGLYMSD 282 (699)
Q Consensus 207 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~l~~ 282 (699)
+++|.+++.++.. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 6666655333221 2334555566666655555544443 4555666666666666555555555443 4556666666
Q ss_pred CcCcCcCchh--------hhccCCCcEEeccCCcccccCCccccCC---CCCcEEEcccccCcccCCCCCCCCCccEEEc
Q 040184 283 NNLYGNIPAW--------LGNLSSLYDIMMASNHLQGPIPLEFCQL---NYLQILDLSENNISGSLPSCSSHSSITQVHL 351 (699)
Q Consensus 283 n~l~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l 351 (699)
|.+.+..+.. +..+++|+.|++++|.+.+..|..+... ++|+.|++++|...+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 257 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------ 257 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence 6555433222 1233455555555555554444433322 4555555555544321110
Q ss_pred cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhh--cCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcc
Q 040184 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE--RLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNI 429 (699)
Q Consensus 352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i 429 (699)
.+.+.+..+..+. ..++|++|++++|++.+..+..+..+++|+.|++++|++
T Consensus 258 --------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 258 --------------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp --------------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred --------------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 0111111111111 135667777777777666666677777777777777777
Q ss_pred cccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc
Q 040184 430 FGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE 509 (699)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 509 (699)
++..|..+.. +++|+.|++++|.+++.
T Consensus 312 ~~~~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 312 NKIDDNAFWG-----------------------------------------------------LTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp CEECTTTTTT-----------------------------------------------------CTTCCEEECCSSCCCEE
T ss_pred cccChhHhcC-----------------------------------------------------cccCCEEECCCCccCCc
Confidence 6665555433 24677777777777777
Q ss_pred CCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCC
Q 040184 510 IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPE 584 (699)
Q Consensus 510 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 584 (699)
.|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 778888899999999999999988888899999999999999999977777788899999999999999988885
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1e-37 Score=334.06 Aligned_cols=401 Identities=24% Similarity=0.281 Sum_probs=191.0
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCC-------------CCCEEEcCCCcCcccCCC
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNT-------------NLNTLVLRNNSLSGPFRM 145 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~-------------~L~~L~Ls~n~i~~~~~~ 145 (699)
+|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..+ .+++ ++++|++++|.+++. |.
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~ 88 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-CC
Confidence 455555555555 4445555555555555555555554444442 3333 346666666666652 22
Q ss_pred CCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCC
Q 040184 146 PIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF 225 (699)
Q Consensus 146 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 225 (699)
-.++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.++ .+|. +..++
T Consensus 89 ---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~ 153 (454)
T 1jl5_A 89 ---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNSS 153 (454)
T ss_dssp ---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTCT
T ss_pred ---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCCC
Confidence 12566666666666663 4432 2466677776666653 2211 146667777776666 4552 34566
Q ss_pred CCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEecc
Q 040184 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA 305 (699)
Q Consensus 226 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 305 (699)
+|++|++++|.+.+ +|.. ..+|++|++++|.+++ +| .++.+++|+.|++++|++++ +|.. .++|+.|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 67777777666654 3332 2467777777777664 34 46667777777777776664 2322 2466777777
Q ss_pred CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc
Q 040184 306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI 385 (699)
Q Consensus 306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 385 (699)
+|.+. .+| .+..+++|++|++++|++.+ +|. ..++|+.|++++|.+.+ ++. .+++|+.|++++|.+++..
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCccc
Confidence 77666 444 36667777777777776664 222 23566666666666543 222 1356677777777666421
Q ss_pred ChhhhcCCCCCEEEcccCcCCCCCCcccCCC-CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccc
Q 040184 386 PYWIERLTYLRYLILANNNLEGEVPIQLCRL-KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY 464 (699)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (699)
. ..++|++|++++|++++. ..+ ++|+.|++++|++++ +|..
T Consensus 294 -~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---------------------------- 335 (454)
T 1jl5_A 294 -E---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---------------------------- 335 (454)
T ss_dssp -C---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred -C---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc----------------------------
Confidence 1 114667777777766631 122 467777777777653 3321
Q ss_pred cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc--cCCccccCCC
Q 040184 465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG--VIPVTFSNLN 542 (699)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~ 542 (699)
+++|+.|++++|.+++ +|. .+++|++|++++|++++ .+|..+..
T Consensus 336 ----------------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-- 381 (454)
T 1jl5_A 336 ----------------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED-- 381 (454)
T ss_dssp ----------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--
T ss_pred ----------------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--
Confidence 2366677777777763 444 35677777777777766 44444332
Q ss_pred CCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc--cCCCCCcCCCCCCCCccCCCCCCC
Q 040184 543 QVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG--KIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 543 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
++.|...+.+|.. +++|+.|++++|++++ .+|. +++.+.+.+|.+.|
T Consensus 382 ------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 382 ------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVD 430 (454)
T ss_dssp ------EECCC-----------------------------------------------------
T ss_pred ------hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCC
Confidence 2334555555542 3788999999999887 4554 34555667766666
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-37 Score=331.58 Aligned_cols=387 Identities=23% Similarity=0.229 Sum_probs=183.6
Q ss_pred CCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCC-------------CEEEccCccCCcc
Q 040184 100 NQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHL-------------DTLYVSKNFFQGN 166 (699)
Q Consensus 100 ~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~l~~n~i~~~ 166 (699)
..++|++|++++|.+ +.+|..+ +++++|++|++++|.+.+..|..++.+++| ++|++++|.++ .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 357899999999999 6899885 899999999999999999999999988876 66666666665 2
Q ss_pred CchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCccccc
Q 040184 167 IPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKN 246 (699)
Q Consensus 167 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 246 (699)
+|. ..++|++|++++|.+++ +|.. .++|++|++++|.++ .++.. .++|++|++++|.+.+ +| .+.
T Consensus 86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~ 150 (454)
T 1jl5_A 86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQ 150 (454)
T ss_dssp CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCT
T ss_pred CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccC
Confidence 333 12456666666666654 3432 255666666666665 33321 2456666666666654 33 356
Q ss_pred CCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184 247 YLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326 (699)
Q Consensus 247 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 326 (699)
.+++|++|++++|.+++ +|..+ ++|++|++++|++++ +| .++++++|+.|++++|.+.+ +|.. .++|++|
T Consensus 151 ~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L 220 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESI 220 (454)
T ss_dssp TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEE
Confidence 66666666666666653 33322 356666666666654 33 35556666666666665553 2221 1355666
Q ss_pred EcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCC
Q 040184 327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406 (699)
Q Consensus 327 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 406 (699)
++++|.+. .+|....+++|+.|++++|.+.+ ++. .+++|+.|++++|++++ +|.. .++|++|++++|+++
T Consensus 221 ~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 221 VAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp ECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 66666555 33433355555555555555543 111 12455555555555554 2221 245555555555555
Q ss_pred CCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceee
Q 040184 407 GEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISF 486 (699)
Q Consensus 407 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (699)
+. +. ..++|+.|++++|++++. +.
T Consensus 291 ~l-~~---~~~~L~~L~l~~N~l~~i-~~--------------------------------------------------- 314 (454)
T 1jl5_A 291 GL-SE---LPPNLYYLNASSNEIRSL-CD--------------------------------------------------- 314 (454)
T ss_dssp EE-SC---CCTTCCEEECCSSCCSEE-CC---------------------------------------------------
T ss_pred cc-cC---cCCcCCEEECcCCcCCcc-cC---------------------------------------------------
Confidence 31 11 013555555555555421 10
Q ss_pred eeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccc--cCCccccc
Q 040184 487 SYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG--KIPPQLVE 564 (699)
Q Consensus 487 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~ 564 (699)
.+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+..
T Consensus 315 -----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 315 -----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp -----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred -----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 01255666666666664 3332 3566666666666663 333 34566666666666664 34433321
Q ss_pred CCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184 565 LNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 565 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
++.|.+.+.+|.. +++++.+++++|++..
T Consensus 382 --------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 --------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp --------EECCC---------------------------
T ss_pred --------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence 2345555555542 3789999999999876
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=333.79 Aligned_cols=347 Identities=20% Similarity=0.188 Sum_probs=214.5
Q ss_pred cEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccC
Q 040184 179 VYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA 258 (699)
Q Consensus 179 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 258 (699)
+.++.++++++ .+|..+. ++++.|++++|.++ .++...+..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 3343332 34555555555555 33333333455555555555555544455555555555555555
Q ss_pred CcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCC
Q 040184 259 NYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLP 338 (699)
Q Consensus 259 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 338 (699)
|.++...+..|.++++|+.|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence 5555433344455555555555555554444444444555555555555444444444444444444444444433
Q ss_pred CCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCC
Q 040184 339 SCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQ 418 (699)
Q Consensus 339 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 418 (699)
+ ++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+.......+
T Consensus 166 -------------------~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 166 -------------------S-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp -------------------S-CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred -------------------c-cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 2 22333677788888888888888777777788888888888888776666655555668
Q ss_pred CCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccE
Q 040184 419 LRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYG 498 (699)
Q Consensus 419 L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 498 (699)
|+.|++++|.+++..+..+.. +++|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRH-----------------------------------------------------LVYLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTT-----------------------------------------------------CTTCCE
T ss_pred ccEEECcCCcccccCHHHhcC-----------------------------------------------------ccccCe
Confidence 888888888876433233322 357888
Q ss_pred EEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcC
Q 040184 499 VDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNL 578 (699)
Q Consensus 499 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 578 (699)
|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88888888877777788888888888888888888888888888888888888888876666777888888888888888
Q ss_pred cccCCCCCcCCCCCCCCccCCCCCCCCCC
Q 040184 579 SGKIPEWTAQFTTFKEDSYEGNPLLCGKP 607 (699)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 607 (699)
.+.++..+ .+.......+.+++..|..|
T Consensus 333 ~c~c~~~~-~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 333 ACDCRLLW-VFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECSGGGHH-HHTTTTSSCCTTCCCBEEES
T ss_pred cCccchHh-HHhhhhccccCccCceeCCc
Confidence 77655321 12233445667777777544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=329.20 Aligned_cols=351 Identities=21% Similarity=0.189 Sum_probs=295.1
Q ss_pred CCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEc
Q 040184 153 LDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVL 232 (699)
Q Consensus 153 L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 232 (699)
-+.++.+++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 357888888887 7887664 48999999999999888889999999999999999998 554445568999999999
Q ss_pred cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccccc
Q 040184 233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP 312 (699)
Q Consensus 233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 312 (699)
++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99999877777889999999999999999988888999999999999999999988888899999999999999999977
Q ss_pred CCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcC
Q 040184 313 IPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERL 392 (699)
Q Consensus 313 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l 392 (699)
.+..+..+++|+.|++++|.+.+..+ ..|..+++|+.|++++|...+.++......
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRD------------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECT------------------------TCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeCh------------------------hhcccCcccceeeCCCCccccccCcccccC
Confidence 77778899999999999988764322 226778899999999998877777666667
Q ss_pred CCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCccc
Q 040184 393 TYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTME 472 (699)
Q Consensus 393 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (699)
.+|++|++++|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------- 270 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------------------------------- 270 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence 79999999999999666678899999999999999998776655543
Q ss_pred ccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCC
Q 040184 473 KEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552 (699)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 552 (699)
+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 271 --------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 271 --------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp --------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred --------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 458999999999999988999999999999999999999888888999999999999999
Q ss_pred cccccCCcccccCCCCCeeecccCcCcccCCCCC
Q 040184 553 NLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWT 586 (699)
Q Consensus 553 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 586 (699)
.+....+. ..-......+++.++...+..|..+
T Consensus 331 ~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 331 PLACDCRL-LWVFRRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp CEECSGGG-HHHHTTTTSSCCTTCCCBEEESGGG
T ss_pred CccCccch-HhHHhhhhccccCccCceeCCchHH
Confidence 99854322 1112334456677777777777543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-35 Score=317.66 Aligned_cols=345 Identities=25% Similarity=0.346 Sum_probs=208.3
Q ss_pred CCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEE
Q 040184 127 TNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALD 206 (699)
Q Consensus 127 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 206 (699)
++++.|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4445555554444431 1 2444445555555555544 2222 2224555555555555553322 55555555555
Q ss_pred ccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCc
Q 040184 207 LSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY 286 (699)
Q Consensus 207 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 286 (699)
+++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.+.
T Consensus 119 L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 5555555 3332 23455555555555555432 134555666666654 233322 22556666666666666665
Q ss_pred CcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCccccc
Q 040184 287 GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFF 366 (699)
Q Consensus 287 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 366 (699)
+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------------------~~l~ 240 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------------------GTLA 240 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------------------GGGG
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------------------hhhh
Confidence 32 235566666666666666654433 44556666666666655421 1255
Q ss_pred CCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCC
Q 040184 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNG 446 (699)
Q Consensus 367 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~ 446 (699)
.+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++.+..+ +.
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-------- 306 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS-------- 306 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG--------
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc--------
Confidence 56677777777777765444 6677777777777777774433 6677778888887777764322 11
Q ss_pred CCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEcc
Q 040184 447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLS 526 (699)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 526 (699)
.+++|+.|++++|++++..| +..+++|++|+++
T Consensus 307 ---------------------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 307 ---------------------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp ---------------------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred ---------------------------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 24577888888888876554 6788888888888
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184 527 HNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK 581 (699)
Q Consensus 527 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 581 (699)
+|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8888865 467888888888888888887665 77888888888888888763
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5e-36 Score=321.19 Aligned_cols=375 Identities=19% Similarity=0.146 Sum_probs=242.2
Q ss_pred ccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEcc
Q 040184 80 LESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVS 159 (699)
Q Consensus 80 L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 159 (699)
++......+......+..+.++++|++|++++|.+++ +| . +..+++|++|++++|.+++. + ++.+++|++|+++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACD 93 (457)
T ss_dssp HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECC
T ss_pred HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECc
Confidence 3333333334444445566677788888888888774 45 2 46778888888888877764 2 6777778888888
Q ss_pred CccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCc
Q 040184 160 KNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239 (699)
Q Consensus 160 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 239 (699)
+|++++ ++ + ..+++|++|++++|.+++. | ++.+++|++|++++|.++ .++ +..+++|++|++++|...+
T Consensus 94 ~N~l~~-~~--~-~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 94 SNKLTN-LD--V-TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKIT 162 (457)
T ss_dssp SSCCSC-CC--C-TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCC
T ss_pred CCCCce-ee--c-CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccc
Confidence 877774 33 3 3367778888887777753 3 677777888888877777 343 2457777777777775444
Q ss_pred cCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccC
Q 040184 240 QLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ 319 (699)
Q Consensus 240 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 319 (699)
.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|++++. .++.+++|+.|++++|++.+ +| +..
T Consensus 163 ~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~ 231 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP 231 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred cc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence 33 35667777777777777774 33 66677777777777777653 25666777777777777765 33 566
Q ss_pred CCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEE
Q 040184 320 LNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLI 399 (699)
Q Consensus 320 l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 399 (699)
+++|+.|++++|.+.+.. ...+++|+.|++++| +|+.|+
T Consensus 232 l~~L~~L~l~~N~l~~~~---------------------------~~~l~~L~~L~l~~n--------------~L~~L~ 270 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELD---------------------------VSTLSKLTTLHCIQT--------------DLLEID 270 (457)
T ss_dssp CTTCSEEECCSSCCSCCC---------------------------CTTCTTCCEEECTTC--------------CCSCCC
T ss_pred cCCCCEEEeeCCcCCCcC---------------------------HHHCCCCCEEeccCC--------------CCCEEE
Confidence 667777777777666432 222334444444432 233444
Q ss_pred cccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEE
Q 040184 400 LANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMF 479 (699)
Q Consensus 400 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (699)
+++|++.+..| +..+++|+.|++++|...+.+|.....+...
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L------------------------------------ 312 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------------------------------------ 312 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC------------------------------------
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe------------------------------------
Confidence 44444443333 3345555555555555544444221111100
Q ss_pred eecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 040184 480 TTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIP 559 (699)
Q Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 559 (699)
.....++|+.|++++|++++. .++.+++|+.|++++|++++. +.|+.|++++|.+.|.
T Consensus 313 ---------~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-- 370 (457)
T 3bz5_A 313 ---------DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-- 370 (457)
T ss_dssp ---------CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE--
T ss_pred ---------chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec--
Confidence 001234788999999999974 388999999999999999862 4677788999999865
Q ss_pred cccccCCCCCeeecccCcCcccCCCCC
Q 040184 560 PQLVELNALAFFSVAHNNLSGKIPEWT 586 (699)
Q Consensus 560 ~~l~~l~~L~~L~l~~N~l~~~~~~~~ 586 (699)
..+..|..+++++|+++|.+|..+
T Consensus 371 ---~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 371 ---GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ---EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ---ceeeecCccccccCcEEEEcChhH
Confidence 345678889999999999998754
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.2e-35 Score=316.16 Aligned_cols=345 Identities=25% Similarity=0.340 Sum_probs=220.7
Q ss_pred CCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcE
Q 040184 101 QHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY 180 (699)
Q Consensus 101 ~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~ 180 (699)
+++++.|+++++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCE
Confidence 345555555555554 3443 3455666666666665554433 5556666666666666553 232 233566666
Q ss_pred EeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCc
Q 040184 181 LNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANY 260 (699)
Q Consensus 181 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 260 (699)
|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|+++ |.+.+. ..+..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 6666666654322 666666666666666665 3442 3456677777765 333322 226667777777777777
Q ss_pred CCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCC
Q 040184 261 FTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC 340 (699)
Q Consensus 261 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 340 (699)
+++. ..+..+++|+.|++++|.+.+..+ ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 7643 346777778888888877775544 66677888888888877643 356677788888888777663221
Q ss_pred CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCC
Q 040184 341 SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLR 420 (699)
Q Consensus 341 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 420 (699)
+..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+
T Consensus 261 ------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 261 ------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp ------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred ------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 4445566666666666664433 5666677777777777664333 56677777
Q ss_pred EEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEE
Q 040184 421 LIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVD 500 (699)
Q Consensus 421 ~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 500 (699)
.|++++|++++..| +. .+++|+.|+
T Consensus 313 ~L~L~~n~l~~~~~--~~-----------------------------------------------------~l~~L~~L~ 337 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VS-----------------------------------------------------SLTKLQRLF 337 (466)
T ss_dssp EEECCSSCCSCCGG--GG-----------------------------------------------------GCTTCCEEE
T ss_pred EEECcCCcCCCchh--hc-----------------------------------------------------cCccCCEeE
Confidence 77777777664433 11 235777777
Q ss_pred ccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 040184 501 LSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNG 556 (699)
Q Consensus 501 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 556 (699)
+++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 777777754 467888889999999999887766 7888999999999998885
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.8e-35 Score=308.52 Aligned_cols=332 Identities=19% Similarity=0.174 Sum_probs=186.8
Q ss_pred CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEE
Q 040184 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLH 255 (699)
Q Consensus 176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 255 (699)
++++.|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45555555555555433333445555555555555554 33333333455555555555555444444445555555555
Q ss_pred ccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc
Q 040184 256 LDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG 335 (699)
Q Consensus 256 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 335 (699)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+++|+.+++++|.+.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~- 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS- 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-
Confidence 555555433333344455555555555555444444444455555555555544432 1233344444444444433
Q ss_pred cCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCC
Q 040184 336 SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415 (699)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 415 (699)
+ +...++|++|++++|.+..... ...++|+.|++++|++++. ..+..
T Consensus 200 ----------------------~------~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 200 ----------------------T------LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp ----------------------E------EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred ----------------------c------cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC
Confidence 2 2223456666666666654322 1235666666666666532 34566
Q ss_pred CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCc
Q 040184 416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK 495 (699)
Q Consensus 416 l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 495 (699)
+++|+.|++++|.+++..|..+.. +++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~-----------------------------------------------------l~~ 273 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVK-----------------------------------------------------MQR 273 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT-----------------------------------------------------CSS
T ss_pred CCCccEEECCCCcCCCcChhHccc-----------------------------------------------------ccc
Confidence 666666666666666555544432 236
Q ss_pred ccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184 496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH 575 (699)
Q Consensus 496 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 575 (699)
|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++
T Consensus 274 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 274 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCC
Confidence 6666666666663 3555567778888888888887 4556677788888888888888743 3 56777888888888
Q ss_pred CcCcccCCCCCcCCCCCCCCccCCCCCCCC
Q 040184 576 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCG 605 (699)
Q Consensus 576 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~ 605 (699)
|++.+..... .+..+....+.+++..|.
T Consensus 349 N~~~~~~~~~--~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 349 NDWDCNSLRA--LFRNVARPAVDDADQHCK 376 (390)
T ss_dssp SCEEHHHHHH--HTTTCCTTTBCCCCSCCC
T ss_pred CCccchhHHH--HHHHHHhhcccccCceec
Confidence 8887755432 355666667777887774
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-34 Score=309.93 Aligned_cols=353 Identities=17% Similarity=0.141 Sum_probs=202.6
Q ss_pred cccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCC
Q 040184 22 PLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQ 101 (699)
Q Consensus 22 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~ 101 (699)
.++.+++|++|++++|.+++ +| .+..+++|++|++++|.+.... +..+.+|++|++++|.+++. + +.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred ChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 34555555555555555552 33 3555555555555555554431 23333555555555555543 2 5555
Q ss_pred CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEE
Q 040184 102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181 (699)
Q Consensus 102 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L 181 (699)
++|++|++++|.+++ ++ +..+++|++|++++|.+++. .++.+++|++|++++|+..+.++ + ..+++|++|
T Consensus 106 ~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L 175 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTL 175 (457)
T ss_dssp TTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEE
T ss_pred CcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEE
Confidence 556666666655553 33 34555666666666555542 25555556666666554333332 1 124556666
Q ss_pred eCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcC
Q 040184 182 NLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYF 261 (699)
Q Consensus 182 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 261 (699)
++++|.+++ +| +..+++|+.|++++|.++ .++ +..+++|++|++++|.+.+ +| +..+++|++|++++|.+
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCC-eec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 666666554 22 555556666666666555 232 2345566666666666554 22 45555666666666665
Q ss_pred CccCCccCcCCC-------CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184 262 TGEIPKSLSNCS-------HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334 (699)
Q Consensus 262 ~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 334 (699)
++..+..+..++ +|+.|++++|.+.+..| ++.+++|+.|++++|...+.+|. ..++|+.+++++|
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~--- 317 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN--- 317 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc---
Confidence 543322222111 34445555555444444 34566677777777665554442 3344555555443
Q ss_pred ccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC
Q 040184 335 GSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414 (699)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 414 (699)
++|+.|++++|.+.+. + +..+++|+.|++++|++++ ++.|..|++++|.+.+. .
T Consensus 318 ---------~~L~~L~L~~N~l~~l-~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~ 371 (457)
T 3bz5_A 318 ---------PKLVYLYLNNTELTEL-D---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----G 371 (457)
T ss_dssp ---------TTCCEEECTTCCCSCC-C---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----E
T ss_pred ---------ccCCEEECCCCccccc-c---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----c
Confidence 5788888888888763 2 7788889999999888875 35566777888888754 2
Q ss_pred CCCCCCEEECcCCcccccCCCcccc
Q 040184 415 RLKQLRLIDLSNNNIFGQIPGCLDN 439 (699)
Q Consensus 415 ~l~~L~~L~ls~n~i~~~~~~~~~~ 439 (699)
.+..|..+++++|+++|.+|..+..
T Consensus 372 ~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 372 QTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEEECCCBCCBTTBEEEECCTTCBC
T ss_pred eeeecCccccccCcEEEEcChhHhc
Confidence 4556788899999999999876544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-34 Score=317.67 Aligned_cols=333 Identities=19% Similarity=0.162 Sum_probs=202.9
Q ss_pred CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEE
Q 040184 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLH 255 (699)
Q Consensus 176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 255 (699)
++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|+++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45555555555555444444555555555555555555 33333334455555555555555555555555555555555
Q ss_pred ccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc
Q 040184 256 LDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG 335 (699)
Q Consensus 256 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 335 (699)
+++|.+++..+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 5555555443444455555555555555555544445555555555555555554321 2334445555555544432
Q ss_pred cCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCC
Q 040184 336 SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415 (699)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 415 (699)
+...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..
T Consensus 207 -----------------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 207 -----------------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp -----------------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGG
T ss_pred -----------------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhcc
Confidence 223345666666666665432221 2467777777777664 345666
Q ss_pred CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCc
Q 040184 416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK 495 (699)
Q Consensus 416 l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 495 (699)
+++|+.|++++|.+.+..|..+.. +++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------------------------l~~ 279 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVK-----------------------------------------------------MQR 279 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT-----------------------------------------------------CSS
T ss_pred CCCCCEEECCCCccCCCCHHHhcC-----------------------------------------------------ccC
Confidence 777777777777776665655443 236
Q ss_pred ccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184 496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH 575 (699)
Q Consensus 496 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 575 (699)
|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. | +..+++|+.|++++
T Consensus 280 L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 280 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeC
Confidence 7777777777774 4556677888888999998888 5667778888999999999988854 2 56778899999999
Q ss_pred CcCcccCCCCCcCCCCCCCCccCCCCCCCCC
Q 040184 576 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGK 606 (699)
Q Consensus 576 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~ 606 (699)
|++.|.+... .+..+....+.+++..|+.
T Consensus 355 N~~~~~~~~~--~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 355 NDWDCNSLRA--LFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SCEEHHHHHH--HTTTCCTTTBCCCCCCCCT
T ss_pred CCCCChhHHH--HHHHHhhhccccccccCCc
Confidence 9998765432 3566666778888888854
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-32 Score=282.80 Aligned_cols=302 Identities=22% Similarity=0.286 Sum_probs=136.1
Q ss_pred CCCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCcccc
Q 040184 2 TSLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLE 81 (699)
Q Consensus 2 ~~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~ 81 (699)
++|++|+++++.+. .++. +..+++|++|++++|.++ .++. +..+++|++|++++|.+.... .+..+++|+
T Consensus 44 ~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~ 113 (347)
T 4fmz_A 44 ESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS----ALQNLTNLR 113 (347)
T ss_dssp TTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCS
T ss_pred ccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch----HHcCCCcCC
Confidence 34555555555554 3433 455555555555555554 2221 445555555555555444321 123333455
Q ss_pred EEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCc
Q 040184 82 SVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKN 161 (699)
Q Consensus 82 ~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 161 (699)
+|++++|.+.+..+ +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 55555555443322 44455555555555533322222 2445555555555554443222 444445555555555
Q ss_pred cCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC
Q 040184 162 FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL 241 (699)
Q Consensus 162 ~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 241 (699)
.+. .++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.+.+.
T Consensus 188 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 188 QIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp CCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred ccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC-
Confidence 444 2222 2224445555555554443222 444445555555555444 2332 23344555555555444332
Q ss_pred cccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC
Q 040184 242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN 321 (699)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 321 (699)
..+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 2344444455555555444432 234444445555555444444444444444444455554444443333 34444
Q ss_pred CCcEEEcccccC
Q 040184 322 YLQILDLSENNI 333 (699)
Q Consensus 322 ~L~~L~l~~n~i 333 (699)
+|+.|++++|.+
T Consensus 334 ~L~~L~l~~N~i 345 (347)
T 4fmz_A 334 KMDSADFANQVI 345 (347)
T ss_dssp TCSEESSSCC--
T ss_pred ccceeehhhhcc
Confidence 444444444444
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-32 Score=290.48 Aligned_cols=333 Identities=20% Similarity=0.214 Sum_probs=256.2
Q ss_pred CCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184 150 HWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229 (699)
Q Consensus 150 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 229 (699)
+++++.|+++++.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 467788888888776 677777777888999999999988777778888999999999999888 555555567889999
Q ss_pred EEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309 (699)
Q Consensus 230 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 309 (699)
|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999988866666678899999999999999887788899999999999999998754 256678999999999987
Q ss_pred cccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI 389 (699)
Q Consensus 310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 389 (699)
.+ +...++|+.|++++|.+..... ...++|+.|++++|.+++. .++
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~~---------------------------~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVRG---------------------------PVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEEC---------------------------CCCSSCCEEECCSSCCCCC--GGG
T ss_pred cc-----cCCCCcceEEECCCCeeeeccc---------------------------cccccccEEECCCCCCccc--HHH
Confidence 64 2344578888888887763211 1135677888888887753 567
Q ss_pred hcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCC
Q 040184 390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSS 469 (699)
Q Consensus 390 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (699)
..+++|++|++++|++.+..+..+..+++|+.|++++|++++. |..+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-------------------------------- 291 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG-------------------------------- 291 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSS--------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cccc--------------------------------
Confidence 7888888888888888877788888888899999988888643 2111
Q ss_pred cccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeC
Q 040184 470 TMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDI 549 (699)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 549 (699)
..+++|+.|++++|+++ .+|..+..+++|++|++++|++++.. +..+++|+.|++
T Consensus 292 ---------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l 346 (390)
T 3o6n_A 292 ---------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 346 (390)
T ss_dssp ---------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred ---------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEc
Confidence 12468899999999998 56777889999999999999998653 678899999999
Q ss_pred CCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184 550 SYNNLNGKIPPQLVELNALAFFSVAHNNLSGK 581 (699)
Q Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 581 (699)
++|++....... -+..+....+..+...+.
T Consensus 347 ~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 347 SHNDWDCNSLRA--LFRNVARPAVDDADQHCK 376 (390)
T ss_dssp CSSCEEHHHHHH--HTTTCCTTTBCCCCSCCC
T ss_pred CCCCccchhHHH--HHHHHHhhcccccCceec
Confidence 999998643222 223344444445544433
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-33 Score=285.60 Aligned_cols=259 Identities=31% Similarity=0.499 Sum_probs=206.7
Q ss_pred CCceEECCCCcCcC--cCchhhhccCCCcEEeccC-CcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEE
Q 040184 274 HLEGLYMSDNNLYG--NIPAWLGNLSSLYDIMMAS-NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVH 350 (699)
Q Consensus 274 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~ 350 (699)
+++.|++++|.+.+ .+|..+.++++|+.|++++ |.+.+.+|..+..+++|++|++++|.+.+..|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p------------ 118 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------ 118 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC------------
Confidence 55666666666665 5566666666666666663 66666666666666667766666666653322
Q ss_pred ccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCC-CCCEEECcCCcc
Q 040184 351 LSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLK-QLRLIDLSNNNI 429 (699)
Q Consensus 351 l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~i 429 (699)
.. +..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|++
T Consensus 119 -----------~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 119 -----------DF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp -----------GG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred -----------HH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 22 56667777777777777777777788888888888888888877888888877 888888888888
Q ss_pred cccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc
Q 040184 430 FGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE 509 (699)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 509 (699)
++.+|..+..+ .|+.|++++|.+++.
T Consensus 187 ~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 187 TGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEGD 212 (313)
T ss_dssp EEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEEC
T ss_pred eccCChHHhCC------------------------------------------------------cccEEECcCCcccCc
Confidence 87777665432 378899999999888
Q ss_pred CCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC
Q 040184 510 IPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF 589 (699)
Q Consensus 510 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 589 (699)
.|..|..+++|++|+|++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 899999999999999999999977665 888999999999999999999999999999999999999999999987 689
Q ss_pred CCCCCCccCCCCCCCCCCCCCCC
Q 040184 590 TTFKEDSYEGNPLLCGKPLPDCD 612 (699)
Q Consensus 590 ~~l~~~~~~~Np~~C~~~~~~c~ 612 (699)
++++.+++.+||++|+.|++.|.
T Consensus 291 ~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGSCGGGTCSSSEEESTTSSCCC
T ss_pred cccChHHhcCCCCccCCCCCCCC
Confidence 99999999999999998887773
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.7e-32 Score=282.46 Aligned_cols=304 Identities=22% Similarity=0.314 Sum_probs=189.0
Q ss_pred CCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEE
Q 040184 175 FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSL 254 (699)
Q Consensus 175 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 254 (699)
+++|++|+++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+... ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4566666666666653 22 3566666666666666665 4444 34566666666666665432 245556666666
Q ss_pred EccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184 255 HLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334 (699)
Q Consensus 255 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 334 (699)
++++|.+.+..+ +..+++|+.|++++|......+ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 666666653322 5556666666666664432222 25555556666665555543322 445555555555555443
Q ss_pred ccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC
Q 040184 335 GSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC 414 (699)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 414 (699)
+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|++++..+ +.
T Consensus 191 -----------------------~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 -----------------------DISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp -----------------------CCGG---GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred -----------------------cccc---ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 2111 5566777777777777765444 6677778888888877774333 77
Q ss_pred CCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCC
Q 040184 415 RLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLN 494 (699)
Q Consensus 415 ~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 494 (699)
.+++|++|++++|.+++. + .+ ..++
T Consensus 241 ~l~~L~~L~l~~n~l~~~-~-~~-----------------------------------------------------~~l~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI-N-AV-----------------------------------------------------KDLT 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-G-GG-----------------------------------------------------TTCT
T ss_pred cCCCCCEEECCCCccCCC-h-hH-----------------------------------------------------hcCC
Confidence 777788888887777532 1 11 1245
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 574 (699)
+|+.|++++|.+++. ..+..+++|++|++++|++++..|..++.+++|++|++++|++++..| +..+++|++|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 777777777777753 457777888888888888877777777888888888888888875544 6777888888888
Q ss_pred cCcCc
Q 040184 575 HNNLS 579 (699)
Q Consensus 575 ~N~l~ 579 (699)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 88764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-31 Score=297.49 Aligned_cols=311 Identities=20% Similarity=0.240 Sum_probs=251.3
Q ss_pred CCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE
Q 040184 150 HWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF 229 (699)
Q Consensus 150 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 229 (699)
+.+++.+++++|.+. .+|..++..+++|++|+|++|.+.+..|..|..+++|++|++++|.++ .++...+..+++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 456777888887776 677777777889999999999998888888999999999999999988 566666667899999
Q ss_pred EEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcc
Q 040184 230 LVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHL 309 (699)
Q Consensus 230 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 309 (699)
|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++.. +..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 999999988776677788999999999999999888888999999999999999988643 55678999999999987
Q ss_pred cccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184 310 QGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI 389 (699)
Q Consensus 310 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 389 (699)
.+ +...++|+.|++++|.+....+. ..++|+.|++++|.+++ +.++
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---------------------------~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP---------------------------VNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS---------------------------CCSCCCEEECCSSCCCC--CGGG
T ss_pred cc-----ccCCchhheeeccCCcccccccc---------------------------cCCCCCEEECCCCCCCC--Chhh
Confidence 64 33456788888888887632211 12467888888888775 3667
Q ss_pred hcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCC
Q 040184 390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSS 469 (699)
Q Consensus 390 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (699)
..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++. |..+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~-------------------------------- 297 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG-------------------------------- 297 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSS--------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccc--------------------------------
Confidence 8888888888888888888788888888999999998888753 2211
Q ss_pred cccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeC
Q 040184 470 TMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDI 549 (699)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 549 (699)
..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++
T Consensus 298 ---------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 298 ---------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp ---------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred ---------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 12468999999999998 57778899999999999999998653 667889999999
Q ss_pred CCCccccc
Q 040184 550 SYNNLNGK 557 (699)
Q Consensus 550 s~N~l~~~ 557 (699)
++|.+.+.
T Consensus 353 ~~N~~~~~ 360 (597)
T 3oja_B 353 SHNDWDCN 360 (597)
T ss_dssp CSSCEEHH
T ss_pred eCCCCCCh
Confidence 99999864
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.4e-34 Score=309.32 Aligned_cols=185 Identities=18% Similarity=0.167 Sum_probs=126.7
Q ss_pred CCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCCCccchHHhhcCC-
Q 040184 151 WHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCF- 225 (699)
Q Consensus 151 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 225 (699)
++|++|++++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4677788888877644444545667888888888888764 34566777888888888888887544555555565
Q ss_pred ---CCcEEEccCCcCCc----cCcccccCCCCCcEEEccCCcCCccCCccC-----cCCCCCceEECCCCcCcCcC----
Q 040184 226 ---NLEFLVLSENSLLG----QLFSKKNYLRKLVSLHLDANYFTGEIPKSL-----SNCSHLEGLYMSDNNLYGNI---- 289 (699)
Q Consensus 226 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~---- 289 (699)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888763 446677778888888888888764333222 23557888888888777533
Q ss_pred chhhhccCCCcEEeccCCcccccCCcccc-----CCCCCcEEEcccccCcc
Q 040184 290 PAWLGNLSSLYDIMMASNHLQGPIPLEFC-----QLNYLQILDLSENNISG 335 (699)
Q Consensus 290 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~ 335 (699)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 44556677888888888877654333332 24577777777776653
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.4e-34 Score=309.30 Aligned_cols=308 Identities=19% Similarity=0.149 Sum_probs=154.0
Q ss_pred cccEEEccCCcCccccch-hcCCCCCCCEEEcccCccccc----cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCC
Q 040184 79 QLESVALSGSGIHATFPK-FLYNQHDLEYVDFSDSNLKGE----FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHL 153 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~-~l~~~~~L~~L~ls~n~~~~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 153 (699)
+|++|+++++.++..... .+..+++|++|++++|.+++. ++.. +..+++|++|++++|.+.+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~------------ 70 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGD------------ 70 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHH------------
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCCh------------
Confidence 566777777666544332 255666666666666666532 2222 3455566666666555543
Q ss_pred CEEEccCccCCccCchhhhhcCC----CCcEEeCcCCcccc----cCCccccCCCCCCEEEccCCcCCCccchHHhh---
Q 040184 154 DTLYVSKNFFQGNIPLEIGVYFP----RLVYLNLSRNDFNG----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAM--- 222 (699)
Q Consensus 154 ~~L~l~~n~i~~~~~~~~~~~~~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--- 222 (699)
..+..++..++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+..
T Consensus 71 ------------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 71 ------------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp ------------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 22333333333 46666666666653 34566666777777777777665333332221
Q ss_pred -cCCCCcEEEccCCcCCccC----cccccCCCCCcEEEccCCcCCccCCccCc-----CCCCCceEECCCCcCcCc----
Q 040184 223 -SCFNLEFLVLSENSLLGQL----FSKKNYLRKLVSLHLDANYFTGEIPKSLS-----NCSHLEGLYMSDNNLYGN---- 288 (699)
Q Consensus 223 -~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~---- 288 (699)
..++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 2345666666666554422 33344455666666666655433222222 234566666666655542
Q ss_pred CchhhhccCCCcEEeccCCcccccC-----CccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcc
Q 040184 289 IPAWLGNLSSLYDIMMASNHLQGPI-----PLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYG 363 (699)
Q Consensus 289 ~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 363 (699)
++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.... ..++.
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~- 278 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR- 278 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-
Confidence 2344445555555555555544321 1111234445555555444432100 00111
Q ss_pred cccCCCCccEEECCCCCCCCCcChhhhc-----CCCCCEEEcccCcCCCC----CCcccCCCCCCCEEECcCCcccc
Q 040184 364 TFFNRSSIVTLDLSYNSFSGYIPYWIER-----LTYLRYLILANNNLEGE----VPIQLCRLKQLRLIDLSNNNIFG 431 (699)
Q Consensus 364 ~~~~~~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~i~~ 431 (699)
.+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 1444555666666666555433333322 14566666666665533 23334445566666666665543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.7e-30 Score=263.20 Aligned_cols=270 Identities=21% Similarity=0.263 Sum_probs=130.2
Q ss_pred CCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEecc
Q 040184 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA 305 (699)
Q Consensus 226 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 305 (699)
++++|++++|.+.+..+..+..+++|++|++++|.+++..|.+|+.+++|++|++++|+++. +|..+. ++|+.|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence 34444444444433333334444444444444444443334444444444444444444432 222221 344444444
Q ss_pred CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc
Q 040184 306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI 385 (699)
Q Consensus 306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 385 (699)
+|.+.+..+..+..+++|+.|++++|.+... + .....+..+++|++|++++|.++..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-~~~~~~~~l~~L~~L~l~~n~l~~l- 186 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------G-IENGAFQGMKKLSYIRIADTNITTI- 186 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------G-BCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCcc---------------------C-cChhhccCCCCcCEEECCCCccccC-
Confidence 4444443333444444444444444444310 0 0011134444444444444444432
Q ss_pred ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184 386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS 465 (699)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (699)
|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------- 238 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-------------------------- 238 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--------------------------
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--------------------------
Confidence 21111 45555555555555554555555555666666655555444433322
Q ss_pred CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccC-----
Q 040184 466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSN----- 540 (699)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 540 (699)
+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 239 ---------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 239 ---------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp ---------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred ---------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 235555666666555 45555666666777777777766655555543
Q ss_pred -CCCCCEEeCCCCcccc--cCCcccccCCCCCeeecccCc
Q 040184 541 -LNQVESLDISYNNLNG--KIPPQLVELNALAFFSVAHNN 577 (699)
Q Consensus 541 -l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~ 577 (699)
.+.|+.|++++|.+.. ..|..+..+++++.+++++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2566677777776653 445666667777777777663
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3e-30 Score=265.92 Aligned_cols=288 Identities=22% Similarity=0.258 Sum_probs=156.7
Q ss_pred CCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEEC
Q 040184 201 SLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYM 280 (699)
Q Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 280 (699)
+++.++++++.++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..|.+|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555555555554 555433 245555555555555554555555666666666666665555555666666666666
Q ss_pred CCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc--cCCCCCCCCCccEEEccCccccc
Q 040184 281 SDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG--SLPSCSSHSSITQVHLSKNMLYG 358 (699)
Q Consensus 281 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~n~~~~ 358 (699)
++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------ 168 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA------------------ 168 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS------------------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc------------------
Confidence 666655 2333222 556666666666655545555666666666666665542 11111
Q ss_pred cCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccc
Q 040184 359 PLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLD 438 (699)
Q Consensus 359 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 438 (699)
+..+ +|+.|++++|++++. |..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 169 ------~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 169 ------FDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp ------SCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred ------ccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 2223 444555555554432 22111 4555555555555555555555566666666666665544433332
Q ss_pred cCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccC
Q 040184 439 NTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLT 518 (699)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 518 (699)
. +++|+.|++++|+++ .+|..+..++
T Consensus 239 ~-----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 239 F-----------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp G-----------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred C-----------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCc
Confidence 2 235555666666655 4555566666
Q ss_pred ccCeEEccCCcCcccCCccccC------CCCCCEEeCCCCccc--ccCCcccccCCCCCeeecccCc
Q 040184 519 RIRALNLSHNNLTGVIPVTFSN------LNQVESLDISYNNLN--GKIPPQLVELNALAFFSVAHNN 577 (699)
Q Consensus 519 ~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~ 577 (699)
+|++|++++|++++..+..|.. .++|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6777777777766655555544 245667777777665 4555666667777777776663
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.5e-30 Score=263.41 Aligned_cols=252 Identities=26% Similarity=0.281 Sum_probs=147.7
Q ss_pred CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV 231 (699)
Q Consensus 152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 231 (699)
+++.++++++.++ .+|..++ +++++|++++|.+.+..|..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 5666777766665 5565443 36666666666666555566666666666666666666 33223334556666666
Q ss_pred ccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc
Q 040184 232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311 (699)
Q Consensus 232 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 311 (699)
+++|.+.. +|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.++. .+
T Consensus 109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~ 163 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG 163 (332)
T ss_dssp CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred CCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence 66665542 222221 455555555555554444445555555555555555431 01
Q ss_pred cCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc
Q 040184 312 PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER 391 (699)
Q Consensus 312 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 391 (699)
..+..+..+ +|+.|++++|.+.+. |... .++|++|++++|.+.+..+. .+..+++|+.|++++|++++..+..+..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGI-PKDL-PETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSC-CSSS-CSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCcccccCC-ccCEEECcCCCCCcc-Cccc-cCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 333344444 555555555554431 1111 13444444444444333322 2667778888888888888777777888
Q ss_pred CCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccc
Q 040184 392 LTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLD 438 (699)
Q Consensus 392 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 438 (699)
+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 888888888888887 5666677788888888888888765554443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3e-29 Score=258.28 Aligned_cols=250 Identities=23% Similarity=0.280 Sum_probs=149.3
Q ss_pred CCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184 152 HLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLV 231 (699)
Q Consensus 152 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 231 (699)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 89 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------------ 89 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------------
Confidence 5666666666655 4554332 35566666666665544445555555555555555555
Q ss_pred ccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccc
Q 040184 232 LSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQG 311 (699)
Q Consensus 232 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 311 (699)
+..|..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++.+..+..+.++++|+.|++++|.+..
T Consensus 90 -------~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 90 -------KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp -------CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred -------eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 333444444444444444444444 2222222 455555555555555555555555666666666655532
Q ss_pred --cCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhh
Q 040184 312 --PIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWI 389 (699)
Q Consensus 312 --~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 389 (699)
..+..+..+++|++|++++|.+... |... .++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTI-PQGL-PPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC-CTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTG
T ss_pred cCcChhhccCCCCcCEEECCCCccccC-Cccc-cccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhc
Confidence 4455566666666666666666532 2211 145666666666654443333 7777888888888888877767777
Q ss_pred hcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCcc
Q 040184 390 ERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCL 437 (699)
Q Consensus 390 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 437 (699)
..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 88888888888888887 666677778888888888888775555444
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.5e-31 Score=268.41 Aligned_cols=251 Identities=27% Similarity=0.438 Sum_probs=150.0
Q ss_pred CCcEEEccCCcCCc--cCCccCcCCCCCceEECCC-CcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEE
Q 040184 250 KLVSLHLDANYFTG--EIPKSLSNCSHLEGLYMSD-NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQIL 326 (699)
Q Consensus 250 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 326 (699)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+..|..|.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4444455555555555552 44444445555555555555555555554455555555555555
Q ss_pred EcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCC-CCCEEEcccCcC
Q 040184 327 DLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLT-YLRYLILANNNL 405 (699)
Q Consensus 327 ~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l 405 (699)
++++|.+.+..|. . +..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus 131 ~Ls~N~l~~~~p~-----------------------~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPP-----------------------S-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCG-----------------------G-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCCh-----------------------H-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 5555554432221 1 33444444444444444444444455544 555555555555
Q ss_pred CCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeeccee
Q 040184 406 EGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEIS 485 (699)
Q Consensus 406 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (699)
++..|..+..++ |+.|++++|.+++..|..+..
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------- 219 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------------------------------- 219 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------------------------
Confidence 555555555554 566666666555544443322
Q ss_pred eeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC
Q 040184 486 FSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL 565 (699)
Q Consensus 486 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 565 (699)
+++|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|.. ..+
T Consensus 220 -------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 220 -------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp -------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred -------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 23566666666666644444 677888999999999998888888999999999999999999888876 788
Q ss_pred CCCCeeecccCcCcc
Q 040184 566 NALAFFSVAHNNLSG 580 (699)
Q Consensus 566 ~~L~~L~l~~N~l~~ 580 (699)
++|+.+++++|+..+
T Consensus 291 ~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 291 QRFDVSAYANNKCLC 305 (313)
T ss_dssp GGSCGGGTCSSSEEE
T ss_pred cccChHHhcCCCCcc
Confidence 899999999998443
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=261.65 Aligned_cols=251 Identities=23% Similarity=0.267 Sum_probs=165.2
Q ss_pred CcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccc
Q 040184 251 LVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSE 330 (699)
Q Consensus 251 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 330 (699)
.+.++.++..++ .+|..+. ++++.|++++|++.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 455666666666 4454443 4667777777777666666666666777777777766665556666666666666666
Q ss_pred ccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCc-CCCCC
Q 040184 331 NNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNN-LEGEV 409 (699)
Q Consensus 331 n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 409 (699)
|.+.+ ++...|..+++|++|++++|.++...+..+..+++|++|++++|+ +....
T Consensus 122 n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 66552 222236667778888888887776666677777778888877743 44344
Q ss_pred CcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeC
Q 040184 410 PIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYK 489 (699)
Q Consensus 410 ~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (699)
+..|..+++|++|++++|.++. +|. +
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~-~~~-~---------------------------------------------------- 203 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLRE-IPN-L---------------------------------------------------- 203 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSS-CCC-C----------------------------------------------------
T ss_pred cchhhcccccCeecCCCCcCcc-ccc-c----------------------------------------------------
Confidence 4567777777777777777652 221 1
Q ss_pred CCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCC
Q 040184 490 GKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALA 569 (699)
Q Consensus 490 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 569 (699)
..+++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+..+++|+
T Consensus 204 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 204 -TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp -TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred -CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 1234677777777777766666777777777777777777766666777777777777777777766666666677777
Q ss_pred eeecccCcCcccCC
Q 040184 570 FFSVAHNNLSGKIP 583 (699)
Q Consensus 570 ~L~l~~N~l~~~~~ 583 (699)
.|++++|++.|.+.
T Consensus 283 ~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 283 RIHLHHNPWNCNCD 296 (440)
T ss_dssp EEECCSSCEECSST
T ss_pred EEEcCCCCccCCCC
Confidence 77777777666543
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=9.2e-31 Score=292.66 Aligned_cols=395 Identities=12% Similarity=0.049 Sum_probs=196.5
Q ss_pred CCCCCCEEEcCCCcCcccCCCCCCC-CC-CCCEEEccCcc-CCccCchhhhhcCCCCcEEeCcCCccccc----CCcccc
Q 040184 125 NNTNLNTLVLRNNSLSGPFRMPIQP-HW-HLDTLYVSKNF-FQGNIPLEIGVYFPRLVYLNLSRNDFNGS----IPSSIG 197 (699)
Q Consensus 125 ~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~ 197 (699)
.+++|++|+|++|.+.+..+..+.. ++ +|++|++++|. ++......+...+++|++|+|++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555544332222222 12 25555555554 11111112222355666666666655433 222334
Q ss_pred CCCCCCEEEccCCcCCC----ccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCC---ccCCccCc
Q 040184 198 DMNSLEALDLSHNQLTG----EIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFT---GEIPKSLS 270 (699)
Q Consensus 198 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~ 270 (699)
.+++|++|++++|.+++ .++ .++..+++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 45566666666665541 111 122345666666666655543 3445555666666666542221 12223455
Q ss_pred CCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCC-ccccCCCCCcEEEcccccCcc-cCCCCC-CCCCcc
Q 040184 271 NCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIP-LEFCQLNYLQILDLSENNISG-SLPSCS-SHSSIT 347 (699)
Q Consensus 271 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~-~~~~~~-~~~~L~ 347 (699)
.+++|+.|+++++.. ...|..+..+++|++|++++|.+.+... ..+..+++|+.|+++ +.+.. .++... .+++|+
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 556666666665432 2445555556666666666665443222 224556666666666 22221 111111 344555
Q ss_pred EEEccC-----------ccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc-CCCCCEEEcc----cCcCCCC---
Q 040184 348 QVHLSK-----------NMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER-LTYLRYLILA----NNNLEGE--- 408 (699)
Q Consensus 348 ~L~l~~-----------n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~----~n~l~~~--- 408 (699)
+|++++ +.+++.........+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 555552 23322211111334667777777666666555555544 6777777775 4455532
Q ss_pred --CCcccCCCCCCCEEECcCCc--ccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecce
Q 040184 409 --VPIQLCRLKQLRLIDLSNNN--IFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEI 484 (699)
Q Consensus 409 --~~~~~~~l~~L~~L~ls~n~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (699)
++..+..+++|++|++++|. +++..+..+.
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~---------------------------------------------- 459 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG---------------------------------------------- 459 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH----------------------------------------------
Confidence 22224456777777776443 3322111111
Q ss_pred eeeeCCCCCCcccEEEccCCccCc-cCCccccccCccCeEEccCCcCccc-CCccccCCCCCCEEeCCCCcccccCCccc
Q 040184 485 SFSYKGKPLNKMYGVDLSCNKLTG-EIPPQISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDISYNNLNGKIPPQL 562 (699)
Q Consensus 485 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 562 (699)
..+++|+.|++++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|+++......+
T Consensus 460 ------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 460 ------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp ------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred ------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 113467777777777664 2333446667777777777776533 22333456777777777777664433222
Q ss_pred -ccCCCCCeeeccc
Q 040184 563 -VELNALAFFSVAH 575 (699)
Q Consensus 563 -~~l~~L~~L~l~~ 575 (699)
..+|.+....+..
T Consensus 534 ~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 534 QMARPYWNIELIPS 547 (592)
T ss_dssp GGCCTTEEEEEECC
T ss_pred HHhCCCcEEEEecC
Confidence 2445555444443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=253.48 Aligned_cols=205 Identities=21% Similarity=0.171 Sum_probs=129.1
Q ss_pred CCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceE
Q 040184 199 MNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGL 278 (699)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 278 (699)
|+.....+.+++.++ .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+.+|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455666777776 666654 2467777777777766655567777777777777777776666777777888888
Q ss_pred ECCCCcCcCcCchhhhccCCCcEEeccCCcccccCC-ccccCCCCCcEEEccccc-CcccCCCCCCCCCccEEEccCccc
Q 040184 279 YMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIP-LEFCQLNYLQILDLSENN-ISGSLPSCSSHSSITQVHLSKNML 356 (699)
Q Consensus 279 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~n~~ 356 (699)
++++|++++..+..|.++++|++|++++|++.+..+ ..+..+++|++|++++|. +....+.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------------- 168 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK----------------- 168 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-----------------
Confidence 888887776555557777778888887777774433 366777777777777773 4322222
Q ss_pred cccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc
Q 040184 357 YGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG 431 (699)
Q Consensus 357 ~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~ 431 (699)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++.......+..+++|+.|++++|.+++
T Consensus 169 -------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 169 -------DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp -------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred -------HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 24445555555555555555555555555555556665555543222223345556666666665554
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.7e-28 Score=258.87 Aligned_cols=250 Identities=21% Similarity=0.230 Sum_probs=142.4
Q ss_pred CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEcc
Q 040184 274 HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLS 352 (699)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~ 352 (699)
....++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..+ .+++|+.|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567788877776 4554443 578888888888888778888888888888888888876554443 45566666666
Q ss_pred CccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccC-cCCCCCCcccCCCCCCCEEECcCCcccc
Q 040184 353 KNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANN-NLEGEVPIQLCRLKQLRLIDLSNNNIFG 431 (699)
Q Consensus 353 ~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~i~~ 431 (699)
+|.+.+ ++...|..+++|++|++++|.++...+..+..+++|++|++++| .+....+..|..+++|++|++++|.+++
T Consensus 132 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 665543 22223555555555666555555544445555555555555553 2332333345555555555555555542
Q ss_pred cCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC
Q 040184 432 QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 511 (699)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 511 (699)
. |. + ..+++|+.|++++|.+++..|
T Consensus 211 ~-~~-~-----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 211 M-PN-L-----------------------------------------------------TPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp C-CC-C-----------------------------------------------------TTCTTCCEEECTTSCCSEECG
T ss_pred c-cc-c-----------------------------------------------------cccccccEEECcCCcCcccCc
Confidence 1 11 0 112345555555555555545
Q ss_pred ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184 512 PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI 582 (699)
Q Consensus 512 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 582 (699)
..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 55555555555555555555555555555555555555555555444444455555555555555554443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.4e-28 Score=244.72 Aligned_cols=250 Identities=21% Similarity=0.274 Sum_probs=135.3
Q ss_pred cEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCc--CchhhhccCCCcEEecc
Q 040184 228 EFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGN--IPAWLGNLSSLYDIMMA 305 (699)
Q Consensus 228 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~ 305 (699)
+.++.+++.+.. +|..+ .+++++|++++|.++...+..|..+++|+.|++++|+++.. .+..+..+++|+.|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 456666666543 33322 35677777777777654444566677777777777766532 24455556666666666
Q ss_pred CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCc
Q 040184 306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYI 385 (699)
Q Consensus 306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 385 (699)
+|.+. .+|..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECS
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccc
Confidence 66655 234445555555555555555542211 112444555555555555555444
Q ss_pred ChhhhcCCCCCEEEcccCcCCC-CCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccc
Q 040184 386 PYWIERLTYLRYLILANNNLEG-EVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY 464 (699)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (699)
+..+..+++|++|++++|++.+ ..|..+..+++|++|++++|.+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l----------------------------------- 187 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL----------------------------------- 187 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-----------------------------------
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc-----------------------------------
Confidence 4445555555555555555543 2344444455555555555544
Q ss_pred cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184 465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544 (699)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 544 (699)
++..|..+..+++|++|+|++|++++..+..+..+++|
T Consensus 188 ------------------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 188 ------------------------------------------EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp ------------------------------------------CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred ------------------------------------------CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 44444445555555555555555555544455555555
Q ss_pred CEEeCCCCcccccCCcccccCC-CCCeeecccCcCccc
Q 040184 545 ESLDISYNNLNGKIPPQLVELN-ALAFFSVAHNNLSGK 581 (699)
Q Consensus 545 ~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~ 581 (699)
++|++++|++++..|..+..++ +|++|++++|++++.
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 5555555555555555555553 555555555555544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.6e-28 Score=251.22 Aligned_cols=280 Identities=19% Similarity=0.162 Sum_probs=159.3
Q ss_pred CCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEe
Q 040184 224 CFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIM 303 (699)
Q Consensus 224 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 303 (699)
|+.....+.+++.+.. +|..+ .++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc-ccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4445556666666653 33333 24666666666666655555666666666666666666655555566666666666
Q ss_pred ccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCc-ccccCCCCccEEECCCC-CC
Q 040184 304 MASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRY-GTFFNRSSIVTLDLSYN-SF 381 (699)
Q Consensus 304 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~Ls~n-~i 381 (699)
+++|++.+..+..+..+++|++|++++|.+.+ ++. ..+..+++|++|++++| .+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence 66666664444445566666666666665542 111 22556667777777776 35
Q ss_pred CCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccc
Q 040184 382 SGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVR 461 (699)
Q Consensus 382 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (699)
+...+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+....+..+.
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----------------------- 219 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD----------------------- 219 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-----------------------
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh-----------------------
Confidence 555556666677777777777777666666666677777777776665421111110
Q ss_pred ccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCcccc---ccCccCeEEccCCcCcc----cC
Q 040184 462 STYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQIS---KLTRIRALNLSHNNLTG----VI 534 (699)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~ 534 (699)
.+++|+.|++++|.+++..+..+. ..+.++.++++++.+++ .+
T Consensus 220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 124666666666666654433322 24455555665555543 23
Q ss_pred CccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184 535 PVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
|..+..+++|++|++++|+++...+..+..+++|++|++++|++.+.+|
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 4455556666666666666663222224556666666666666655444
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.9e-30 Score=285.59 Aligned_cols=411 Identities=13% Similarity=0.042 Sum_probs=292.9
Q ss_pred chhhhhCCCCCCEEEcCCCcCc---ccCCCCCC------------CCCCCCEEEccCccCCccCchhhhhcCCC-CcEEe
Q 040184 119 LNWLLENNTNLNTLVLRNNSLS---GPFRMPIQ------------PHWHLDTLYVSKNFFQGNIPLEIGVYFPR-LVYLN 182 (699)
Q Consensus 119 ~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~l~~L~~L~l~~n~i~~~~~~~~~~~~~~-L~~L~ 182 (699)
|..++..+++|++|+++++... +..|..++ .+++|++|++++|.+++..+..+...+++ |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 4444556666666666554221 12222222 67899999999999886666666665556 99999
Q ss_pred CcCCc-ccc-cCCccccCCCCCCEEEccCCcCCCccc---hHHhhcCCCCcEEEccCCcCC----ccCcccccCCCCCcE
Q 040184 183 LSRND-FNG-SIPSSIGDMNSLEALDLSHNQLTGEIP---EHLAMSCFNLEFLVLSENSLL----GQLFSKKNYLRKLVS 253 (699)
Q Consensus 183 L~~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~ 253 (699)
+++|. +.. ..+.....+++|++|++++|.+++.-. ..+...+++|++|++++|.+. +.++..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99987 221 122334578999999999998864421 123457999999999999986 334455677899999
Q ss_pred EEccCCcCCccCCccCcCCCCCceEECCCCcCc---CcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccc
Q 040184 254 LHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLY---GNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSE 330 (699)
Q Consensus 254 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 330 (699)
|++++|.+.+ .+..+..+++|+.|+++..... ...+..+..+++|+.|++.++... .+|..+..+++|++|++++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCC
Confidence 9999999885 6678889999999999864322 233456677889999999886433 5677788899999999999
Q ss_pred ccCcccCCC--CCCCCCccEEEccCccccccCCcccccCCCCccEEECCC-----------CCCCCCc-ChhhhcCCCCC
Q 040184 331 NNISGSLPS--CSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY-----------NSFSGYI-PYWIERLTYLR 396 (699)
Q Consensus 331 n~i~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~-----------n~i~~~~-~~~~~~l~~L~ 396 (699)
|.+...... ...+++|+.|+++ +.+...........+++|++|++++ +.+++.. +.....+++|+
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 997643321 2378899999998 4443332233246789999999993 5665432 33356699999
Q ss_pred EEEcccCcCCCCCCcccCC-CCCCCEEECc----CCcccccCCC-ccccCCccCCCCCCCCCcccccccccccccCCCCc
Q 040184 397 YLILANNNLEGEVPIQLCR-LKQLRLIDLS----NNNIFGQIPG-CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSST 470 (699)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~-l~~L~~L~ls----~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (699)
+|+++.|++++..+..+.. +++|+.|+++ .|.+++...+ .+...
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~------------------------------ 431 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL------------------------------ 431 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH------------------------------
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH------------------------------
Confidence 9999999998766666655 8999999997 4455432110 00000
Q ss_pred ccccceeEEeecceeeeeCCCCCCcccEEEccCCc--cCccCCcccc-ccCccCeEEccCCcCccc-CCccccCCCCCCE
Q 040184 471 MEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK--LTGEIPPQIS-KLTRIRALNLSHNNLTGV-IPVTFSNLNQVES 546 (699)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 546 (699)
...+++|+.|++++|. +++..+..+. .+++|++|+|++|.+++. ++..+..+++|++
T Consensus 432 -------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 432 -------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp -------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred -------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence 0125689999998654 6655555544 489999999999999863 4455678899999
Q ss_pred EeCCCCccccc-CCcccccCCCCCeeecccCcCccc
Q 040184 547 LDISYNNLNGK-IPPQLVELNALAFFSVAHNNLSGK 581 (699)
Q Consensus 547 L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 581 (699)
|++++|.+++. ++.....+++|++|++++|+++..
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 99999998754 344556799999999999998754
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.7e-28 Score=245.97 Aligned_cols=261 Identities=22% Similarity=0.266 Sum_probs=203.8
Q ss_pred ceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCcc
Q 040184 276 EGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNM 355 (699)
Q Consensus 276 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~ 355 (699)
+.++++++.++ .+|..+. ++|+.|++++|.+....+..|..+++|++|++++|.+...
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-------------------
Confidence 45666666665 3343332 4677777777776654444566666777777766665421
Q ss_pred ccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCC
Q 040184 356 LYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIP 434 (699)
Q Consensus 356 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~ 434 (699)
+..+.. +..+++|++|++++|.++. ++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+
T Consensus 68 --~~~~~~-~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 68 --GCCSQS-DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp --EEEEHH-HHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred --cCcccc-cccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 111122 4567788888888888874 45557788889999999988886554 578888999999999999887666
Q ss_pred CccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCc-cCCcc
Q 040184 435 GCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTG-EIPPQ 513 (699)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 513 (699)
..+.. +++|++|++++|.+++ ..|..
T Consensus 144 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 144 GIFNG-----------------------------------------------------LSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp TTTTT-----------------------------------------------------CTTCCEEECTTCEEGGGEECSC
T ss_pred hhccc-----------------------------------------------------CcCCCEEECCCCccccccchhH
Confidence 55543 3588999999999886 57888
Q ss_pred ccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC-CCC
Q 040184 514 ISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF-TTF 592 (699)
Q Consensus 514 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l 592 (699)
+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+ +++
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 9999999999999999999989999999999999999999998888789999999999999999999999988887 489
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184 593 KEDSYEGNPLLCGKPLPDCDVAAVPEAS 620 (699)
Q Consensus 593 ~~~~~~~Np~~C~~~~~~c~~~~~~~~~ 620 (699)
+.+++++||+.| +|+..|+..|.
T Consensus 251 ~~L~L~~N~~~~-----~c~~~~~~~~l 273 (306)
T 2z66_A 251 AFLNLTQNDFAC-----TCEHQSFLQWI 273 (306)
T ss_dssp CEEECTTCCEEC-----SGGGHHHHHHH
T ss_pred CEEEccCCCeec-----ccChHHHHHHH
Confidence 999999999999 78866665554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.7e-26 Score=246.78 Aligned_cols=248 Identities=23% Similarity=0.200 Sum_probs=197.2
Q ss_pred CcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccC
Q 040184 227 LEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMAS 306 (699)
Q Consensus 227 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 306 (699)
...++.++..+.. +|..+ .+++++|++++|.+++..+..|.++++|+.|++++|++++..+..|.++++|+.|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4566777666653 34433 35777777777777776677777777777777777777766666777777777777777
Q ss_pred CcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCC-CCCCCc
Q 040184 307 NHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN-SFSGYI 385 (699)
Q Consensus 307 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~ 385 (699)
|.+....+..|..+++|++|++++|.+.. ++...|..+++|+.|++++| .+....
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence 77776666666777777777777776652 22333788999999999994 555555
Q ss_pred ChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccccccccccc
Q 040184 386 PYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYS 465 (699)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (699)
+..+.++++|++|++++|++++. | .+..+++|+.|++++|.+++..|..+..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 240 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG-------------------------- 240 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------------------------
Confidence 66799999999999999999854 4 5888999999999999999887776654
Q ss_pred CCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCC
Q 040184 466 AGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVE 545 (699)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 545 (699)
+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+
T Consensus 241 ---------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 241 ---------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ---------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 35899999999999999999999999999999999999988888999999999
Q ss_pred EEeCCCCcccc
Q 040184 546 SLDISYNNLNG 556 (699)
Q Consensus 546 ~L~Ls~N~l~~ 556 (699)
.|+|++|.+..
T Consensus 294 ~L~L~~Np~~C 304 (452)
T 3zyi_A 294 ELHLHHNPWNC 304 (452)
T ss_dssp EEECCSSCEEC
T ss_pred EEEccCCCcCC
Confidence 99999999874
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=244.82 Aligned_cols=249 Identities=25% Similarity=0.229 Sum_probs=188.5
Q ss_pred CCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEecc
Q 040184 226 NLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMA 305 (699)
Q Consensus 226 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 305 (699)
..+.++.++..+. .+|..+ .++++.|++++|.+++..+..|.++++|+.|++++|.+.+..+..|.++++|+.|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567777777765 344444 3678888888888887777788888888888888888887777778888888888888
Q ss_pred CCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCC-CCCCC
Q 040184 306 SNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYN-SFSGY 384 (699)
Q Consensus 306 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~ 384 (699)
+|++....+..|..+++|++|++++|.+.... ...|..+++|++|++++| .+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------------------------~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIP------------------------SYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC------------------------TTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccC------------------------HHHhhhCcccCEeCCCCCCCccee
Confidence 88888666667788888888888888776322 222667778888888874 44444
Q ss_pred cChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccc
Q 040184 385 IPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTY 464 (699)
Q Consensus 385 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (699)
.+..+.++++|++|++++|+++. +| .+..+++|+.|++++|++++..|..+..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------- 229 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG------------------------- 229 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT-------------------------
T ss_pred CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc-------------------------
Confidence 45577888888888888888873 34 4777888888888888887776665544
Q ss_pred cCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC
Q 040184 465 SAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV 544 (699)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 544 (699)
+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 230 ----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 230 ----------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ----------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ----------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 3478888888888888778888888888888888888887777778888888
Q ss_pred CEEeCCCCcccc
Q 040184 545 ESLDISYNNLNG 556 (699)
Q Consensus 545 ~~L~Ls~N~l~~ 556 (699)
+.|+|++|.+..
T Consensus 282 ~~L~L~~Np~~C 293 (440)
T 3zyj_A 282 ERIHLHHNPWNC 293 (440)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEcCCCCccC
Confidence 888888888763
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.3e-26 Score=231.42 Aligned_cols=236 Identities=21% Similarity=0.216 Sum_probs=129.4
Q ss_pred CCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccccc-CcccCCCCCCCCCccEEEc
Q 040184 273 SHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENN-ISGSLPSCSSHSSITQVHL 351 (699)
Q Consensus 273 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l 351 (699)
++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|. +...
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~--------------- 96 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV--------------- 96 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC---------------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc---------------
Confidence 345555555555554444444555555555555555544444455555555555555554 3311
Q ss_pred cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccc
Q 040184 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFG 431 (699)
Q Consensus 352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~ 431 (699)
+...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 97 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 97 ---------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp ---------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred ---------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 11124455556666666666665555556666666666666666665555556666666666666666654
Q ss_pred cCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC
Q 040184 432 QIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP 511 (699)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 511 (699)
..+..+.. +++|+.|++++|.+++..|
T Consensus 168 ~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 168 VPERAFRG-----------------------------------------------------LHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp ECTTTTTT-----------------------------------------------------CTTCCEEECCSSCCCEECT
T ss_pred cCHHHhcC-----------------------------------------------------ccccCEEECCCCcccccCH
Confidence 43333322 2355666666666665556
Q ss_pred ccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCC
Q 040184 512 PQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWT 586 (699)
Q Consensus 512 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 586 (699)
..|..+++|++|++++|++++..+..+..+++|++|++++|.+....+.. .-...++.+..+.+.+.+..|..+
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence 66666666666666666666655555666666666666666665332211 111234444455666666666543
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.7e-29 Score=279.87 Aligned_cols=424 Identities=17% Similarity=0.121 Sum_probs=231.7
Q ss_pred hcCCCCCCCEEEcccCcccccc--------------chhhhhCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCEEEccCc
Q 040184 97 FLYNQHDLEYVDFSDSNLKGEF--------------LNWLLENNTNLNTLVLRNNSLSGPFRMPIQ-PHWHLDTLYVSKN 161 (699)
Q Consensus 97 ~l~~~~~L~~L~ls~n~~~~~~--------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n 161 (699)
.+..+++|++|+++++.....+ ...++..+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 4455666666666665421111 122335667777777777776654443443 4677777777777
Q ss_pred -cCCccCchhhhhcCCCCcEEeCcCCcccccCCcccc----CCCCCCEEEccCCc--CCCccchHHhhcCCCCcEEEccC
Q 040184 162 -FFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG----DMNSLEALDLSHNQ--LTGEIPEHLAMSCFNLEFLVLSE 234 (699)
Q Consensus 162 -~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~ 234 (699)
.+++.....+...+++|++|++++|.+++..+..+. .+++|++|++++|. +.......+...+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 443222334444577888888888877654443333 56688888888876 22111222334568888888887
Q ss_pred CcCCccCcccccCCCCCcEEEccCCc-------CCccCCccCcCCCCCceE-ECCCCcCcCcCchhhhccCCCcEEeccC
Q 040184 235 NSLLGQLFSKKNYLRKLVSLHLDANY-------FTGEIPKSLSNCSHLEGL-YMSDNNLYGNIPAWLGNLSSLYDIMMAS 306 (699)
Q Consensus 235 n~l~~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 306 (699)
|...+.++..+..+++|++|+++.+. +.+ .+..+.++++|+.| .+.+... +.++..+..+++|+.|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 74333356666677888888765443 221 23356777777777 3333222 23444455677788888877
Q ss_pred CcccccC-CccccCCCCCcEEEcccccCccc-CCCCC-CCCCccEEEccC---------ccccccCCcccccCCCCccEE
Q 040184 307 NHLQGPI-PLEFCQLNYLQILDLSENNISGS-LPSCS-SHSSITQVHLSK---------NMLYGPLRYGTFFNRSSIVTL 374 (699)
Q Consensus 307 n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~-~~~~~-~~~~L~~L~l~~---------n~~~~~~~~~~~~~~~~L~~L 374 (699)
|.+.+.. ...+..+++|+.|++++| +... ++... .+++|++|++.+ +.+++.........+++|+.|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 7755322 222456777777777776 3211 11111 355666666632 222221111111236677777
Q ss_pred ECCCCCCCCCcChhhh-cCCCCCEEEcc--c----CcCCCCC-----CcccCCCCCCCEEECcCCcccccCCCccccCCc
Q 040184 375 DLSYNSFSGYIPYWIE-RLTYLRYLILA--N----NNLEGEV-----PIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSL 442 (699)
Q Consensus 375 ~Ls~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~-----~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~ 442 (699)
.+..+.+++.....+. .+++|+.|+++ + +.+++.. +..+..+++|+.|++++ .+++..+..+..
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~--- 453 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT--- 453 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH---
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH---
Confidence 6666666654444443 46777777777 3 3344211 11244566777777755 443222111110
Q ss_pred cCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccc-cccCccC
Q 040184 443 HNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQI-SKLTRIR 521 (699)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~ 521 (699)
.+++|+.|++++|.+++..+..+ ..+++|+
T Consensus 454 -------------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 454 -------------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp -------------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCC
T ss_pred -------------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcC
Confidence 13466777777777654433333 5566777
Q ss_pred eEEccCCcCcccCCc-cccCCCCCCEEeCCCCcccccCCccc-ccCCCCCeeecccC
Q 040184 522 ALNLSHNNLTGVIPV-TFSNLNQVESLDISYNNLNGKIPPQL-VELNALAFFSVAHN 576 (699)
Q Consensus 522 ~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~l~~N 576 (699)
+|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 777777776433222 23346677777777776643322333 34555555555444
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.5e-27 Score=234.62 Aligned_cols=226 Identities=22% Similarity=0.212 Sum_probs=120.6
Q ss_pred cEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCC-CCCCccEEEccCccccccCCcccccCCCCccEEECCC
Q 040184 300 YDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCS-SHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY 378 (699)
Q Consensus 300 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~ 378 (699)
+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+ .+++|+.|++++|.+.+..+.. +..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCC
Confidence 45666666665 334332 3467777777777765444333 4555555555555554433322 55555555555555
Q ss_pred CC-CCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCccccc
Q 040184 379 NS-FSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFN 457 (699)
Q Consensus 379 n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (699)
|. ++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------ 151 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------ 151 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence 54 44444555555555555555555555544555555555555555555554333322222
Q ss_pred ccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCcc
Q 040184 458 HNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVT 537 (699)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 537 (699)
+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..
T Consensus 152 -----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 152 -----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred -----------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 235555555555555444444555555555555555555555555
Q ss_pred ccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184 538 FSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI 582 (699)
Q Consensus 538 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 582 (699)
|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 555555555555555555444444555555555555555555433
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2e-27 Score=242.76 Aligned_cols=246 Identities=21% Similarity=0.197 Sum_probs=166.0
Q ss_pred CCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEc
Q 040184 272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351 (699)
Q Consensus 272 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l 351 (699)
+++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ .++|+.|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 3344444444444444333444444444444444444443222 4444444555554444442221 145555555
Q ss_pred cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC-CCCCCCEEECcCCccc
Q 040184 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC-RLKQLRLIDLSNNNIF 430 (699)
Q Consensus 352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~i~ 430 (699)
++|.+.+.. ...+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus 107 ~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 555553322 22356788899999888887777888888999999999988876666653 6889999999999887
Q ss_pred ccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccC
Q 040184 431 GQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEI 510 (699)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 510 (699)
+..+. ..+++|+.|++++|++++.
T Consensus 183 ~~~~~-------------------------------------------------------~~l~~L~~L~Ls~N~l~~l- 206 (317)
T 3o53_A 183 DVKGQ-------------------------------------------------------VVFAKLKTLDLSSNKLAFM- 206 (317)
T ss_dssp EEECC-------------------------------------------------------CCCTTCCEEECCSSCCCEE-
T ss_pred ccccc-------------------------------------------------------cccccCCEEECCCCcCCcc-
Confidence 54211 1145889999999999854
Q ss_pred CccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCccc-ccCCcccccCCCCCeeecccC-cCcccCCC
Q 040184 511 PPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLN-GKIPPQLVELNALAFFSVAHN-NLSGKIPE 584 (699)
Q Consensus 511 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~~N-~l~~~~~~ 584 (699)
|..+..+++|++|+|++|++++ +|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++| .+.+..|.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 4558899999999999999994 5777889999999999999998 777888889999999999955 46655443
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.8e-26 Score=231.66 Aligned_cols=225 Identities=18% Similarity=0.202 Sum_probs=155.1
Q ss_pred CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEE
Q 040184 102 HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYL 181 (699)
Q Consensus 102 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L 181 (699)
++++.|++++|.++ .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|..+.. +++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEE
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEE
Confidence 45666666666665 555543 34666666666666665 45555666666666666666665 55555444 5566666
Q ss_pred eCcCCcccccCCcccc---------CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCc
Q 040184 182 NLSRNDFNGSIPSSIG---------DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLV 252 (699)
Q Consensus 182 ~L~~n~i~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 252 (699)
++++|.+.+.+|..+. .+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+ +|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 6666555555555544 3777777777777777 777664 457777777777777764 445577777888
Q ss_pred EEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEccccc
Q 040184 253 SLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENN 332 (699)
Q Consensus 253 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 332 (699)
+|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+..+++|+.+++..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 88888877777777777888888888888877777777777888888888888887777788888888888888877665
Q ss_pred Cc
Q 040184 333 IS 334 (699)
Q Consensus 333 i~ 334 (699)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 54
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.2e-25 Score=228.31 Aligned_cols=225 Identities=18% Similarity=0.207 Sum_probs=179.1
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEc
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYV 158 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 158 (699)
++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 6888888888886 55666777888888888888887 777664 77888888888888887 56777888888888888
Q ss_pred cCccCCccCchhhhh--------cCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEE
Q 040184 159 SKNFFQGNIPLEIGV--------YFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFL 230 (699)
Q Consensus 159 ~~n~i~~~~~~~~~~--------~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 230 (699)
++|++.+.+|..+.. .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ ..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-ccCCCCCEE
Confidence 888777777766532 3678888888888887 67777888888888888888887 566654 468888888
Q ss_pred EccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccc
Q 040184 231 VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQ 310 (699)
Q Consensus 231 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 310 (699)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888888888887788888888888888888888888888888888888888888766544
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.9e-28 Score=272.63 Aligned_cols=397 Identities=14% Similarity=0.089 Sum_probs=228.7
Q ss_pred CccccEEEccCCcCccccchhcC-CCCCCCEEEcccC-ccccccchhhhhCCCCCCEEEcCCCcCcccCCC----CCCCC
Q 040184 77 KFQLESVALSGSGIHATFPKFLY-NQHDLEYVDFSDS-NLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRM----PIQPH 150 (699)
Q Consensus 77 ~~~L~~L~ls~~~i~~~~~~~l~-~~~~L~~L~ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l 150 (699)
+++|++|++++|.+++..+..+. .+++|++|++++| .+++.....++.++++|++|++++|.+++..+. ....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34788888888888776666665 6889999999888 555443445556889999999998887654332 23466
Q ss_pred CCCCEEEccCcc--CCccCchhhhhcCCCCcEEeCcCC-cccccCCccccCCCCCCEEEccCCc-------CCCccchHH
Q 040184 151 WHLDTLYVSKNF--FQGNIPLEIGVYFPRLVYLNLSRN-DFNGSIPSSIGDMNSLEALDLSHNQ-------LTGEIPEHL 220 (699)
Q Consensus 151 ~~L~~L~l~~n~--i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~ 220 (699)
++|++|++++|. +.......+...+++|++|++++| .+. .++..+..+++|+.|+++.+. +. .++..+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 788888888886 322222233344688888888888 344 366777788888888866543 22 333333
Q ss_pred hhcCCCCcEE-EccCCcCCccCcccccCCCCCcEEEccCCcCCccC-CccCcCCCCCceEECCCCcCcCc-CchhhhccC
Q 040184 221 AMSCFNLEFL-VLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEI-PKSLSNCSHLEGLYMSDNNLYGN-IPAWLGNLS 297 (699)
Q Consensus 221 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 297 (699)
.++++|+.+ .+.+... ..++..+..+++|++|++++|.+++.. ...+..+++|+.|++++| +.+. .+.....++
T Consensus 262 -~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 -SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp -HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred -hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 467778777 3333221 233333445677777777777755322 122456677777777766 3321 222223466
Q ss_pred CCcEEeccC---------CcccccCCcccc-CCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccC
Q 040184 298 SLYDIMMAS---------NHLQGPIPLEFC-QLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFN 367 (699)
Q Consensus 298 ~L~~L~l~~---------n~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 367 (699)
+|+.|++.+ +.+++.....+. .+++|+.|+++.|.++. .........
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~-----------------------~~~~~l~~~ 395 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN-----------------------AALITIARN 395 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH-----------------------HHHHHHHHH
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH-----------------------HHHHHHHhh
Confidence 777776633 222221111111 24555555555554442 211111123
Q ss_pred CCCccEEECC--C----CCCCCC-----cChhhhcCCCCCEEEcccCcCCCCCCcccCC-CCCCCEEECcCCcccccCCC
Q 040184 368 RSSIVTLDLS--Y----NSFSGY-----IPYWIERLTYLRYLILANNNLEGEVPIQLCR-LKQLRLIDLSNNNIFGQIPG 435 (699)
Q Consensus 368 ~~~L~~L~Ls--~----n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ls~n~i~~~~~~ 435 (699)
+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+.
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 5566666666 2 334321 122255667777777765 444333333333 66777777777776543221
Q ss_pred ccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCc-cc
Q 040184 436 CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP-QI 514 (699)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~ 514 (699)
.+. ..+++|+.|++++|.+++.... ..
T Consensus 475 ~l~----------------------------------------------------~~~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 475 HVL----------------------------------------------------SGCDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp HHH----------------------------------------------------HHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred HHH----------------------------------------------------hcCCCcCEEECcCCCCcHHHHHHHH
Confidence 110 0134677777777777543333 34
Q ss_pred cccCccCeEEccCCcCcccCCccc-cCCCCCCEEeCCCCcc
Q 040184 515 SKLTRIRALNLSHNNLTGVIPVTF-SNLNQVESLDISYNNL 554 (699)
Q Consensus 515 ~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l 554 (699)
..+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus 503 ~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp GGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 557888888888888753322333 4467776666665543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-24 Score=239.17 Aligned_cols=266 Identities=21% Similarity=0.182 Sum_probs=180.8
Q ss_pred CCcEEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccE
Q 040184 3 SLRVLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLES 82 (699)
Q Consensus 3 ~L~~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~ 82 (699)
++++|++++|+++ .+|. .+. ++|++|++++|.++ .+|. .+++|++|++++|.+...+. .+++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV------LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC------CCTTCCE
T ss_pred CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC------CCCCCCE
Confidence 4778888888888 7777 343 78888888888887 5663 46788888888888765432 2347888
Q ss_pred EEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc
Q 040184 83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF 162 (699)
Q Consensus 83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 162 (699)
|++++|.+++..+ .+++|+.|++++|.++ .+|. .+++|++|++++|.+.+. +. ..++|+.|++++|.
T Consensus 106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp EEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred EECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCC
Confidence 8888888766433 5677888888888877 4553 347788888888877753 22 24567777888777
Q ss_pred CCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCc
Q 040184 163 FQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLF 242 (699)
Q Consensus 163 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 242 (699)
++ .+| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|. .+++|++|++++|.+.+ +|
T Consensus 173 l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 173 LT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP 237 (622)
T ss_dssp CS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC
T ss_pred CC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC
Confidence 77 455 235677777777777764 3332 367777777777776 5553 24677777777777764 33
Q ss_pred ccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccC
Q 040184 243 SKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ 319 (699)
Q Consensus 243 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 319 (699)
..+++|+.|++++|.++. +|. .+++|+.|++++|+++ .+|..+.++++|+.|++++|.+.+..|..+..
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 345677777777777763 343 4566777777777776 45666677777777777777766655555443
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-27 Score=242.91 Aligned_cols=262 Identities=18% Similarity=0.183 Sum_probs=213.4
Q ss_pred CCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccC
Q 040184 274 HLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSK 353 (699)
Q Consensus 274 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~ 353 (699)
+++..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ...+++|+.|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 34556677777765555666778899999999999998888899999999999999999986655 55889999999999
Q ss_pred ccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccC
Q 040184 354 NMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQI 433 (699)
Q Consensus 354 n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~ 433 (699)
|.+.+. ...++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 90 n~l~~l------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQEL------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEE------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Cccccc------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 998652 3447899999999999876554 3678999999999999877778888999999999999998765
Q ss_pred CCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCcc
Q 040184 434 PGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQ 513 (699)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 513 (699)
+..+.. .+++|++|++++|.+++. + .
T Consensus 161 ~~~~~~----------------------------------------------------~l~~L~~L~L~~N~l~~~-~-~ 186 (317)
T 3o53_A 161 FAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV-K-G 186 (317)
T ss_dssp GGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE-E-C
T ss_pred HHHHhh----------------------------------------------------ccCcCCEEECCCCcCccc-c-c
Confidence 544321 245899999999999865 3 3
Q ss_pred ccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCc-ccCCCCCcCCCCC
Q 040184 514 ISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLS-GKIPEWTAQFTTF 592 (699)
Q Consensus 514 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l 592 (699)
...+++|++|+|++|++++..+ .+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +..|..+..++.+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 3458999999999999996544 5889999999999999999 56778899999999999999998 5666666667777
Q ss_pred CCCccCCCC
Q 040184 593 KEDSYEGNP 601 (699)
Q Consensus 593 ~~~~~~~Np 601 (699)
+.+.+.+++
T Consensus 265 ~~l~l~~~~ 273 (317)
T 3o53_A 265 QTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHH
T ss_pred eEEECCCch
Confidence 777777443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.2e-24 Score=237.55 Aligned_cols=267 Identities=24% Similarity=0.293 Sum_probs=137.7
Q ss_pred CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL 256 (699)
Q Consensus 177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 256 (699)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+.+ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 5777777777777 4555554 67777777777776 5665 35667777777776653 222 4566666666
Q ss_pred cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc
Q 040184 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS 336 (699)
Q Consensus 257 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 336 (699)
++|.+++ +|. .+++|+.|++++|++++ +|.. +++|+.|++++|.+.+. |. .+++|+.|++++|.+.
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-- 174 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-- 174 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC--
Confidence 6666653 222 34556666666665553 2221 24444444444444321 11 1223333343333333
Q ss_pred CCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCC
Q 040184 337 LPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRL 416 (699)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 416 (699)
+ ++ ..+++|+.|++++|.+++. |. .+++|+.|++++|.++. +|. .+
T Consensus 175 ---------------------~-l~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~ 220 (622)
T 3g06_A 175 ---------------------S-LP----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LP 220 (622)
T ss_dssp ---------------------C-CC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CC
T ss_pred ---------------------C-Cc----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CC
Confidence 2 11 1234555555555555532 21 13455566666655552 222 13
Q ss_pred CCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcc
Q 040184 417 KQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKM 496 (699)
Q Consensus 417 ~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 496 (699)
++|+.|++++|.+++ +|. .+++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp~--------------------------------------------------------~l~~L 243 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LPV--------------------------------------------------------LPSEL 243 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC--------------------------------------------------------CCTTC
T ss_pred CCCCEEEccCCccCc-CCC--------------------------------------------------------CCCcC
Confidence 455666666665542 220 12345
Q ss_pred cEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccC
Q 040184 497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVEL 565 (699)
Q Consensus 497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 565 (699)
+.|++++|.++. +|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|.+++..|..+..+
T Consensus 244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 555555555552 333 3455555556555555 345555555555555555555555555444443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.5e-26 Score=234.05 Aligned_cols=209 Identities=20% Similarity=0.129 Sum_probs=140.8
Q ss_pred ccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC-ccCccccc-------CCCCCcEEEccCCcCCccCCc
Q 040184 196 IGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL-GQLFSKKN-------YLRKLVSLHLDANYFTGEIPK 267 (699)
Q Consensus 196 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~ 267 (699)
++..++|+.|++++|.+ .+|..+... |++|++++|.+. ...+..+. .+++|++|++++|.+++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455677777777777 566655432 677777777663 23343333 577888888888888877776
Q ss_pred cC--cCCCCCceEECCCCcCcCcCchhhhcc-----CCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCC
Q 040184 268 SL--SNCSHLEGLYMSDNNLYGNIPAWLGNL-----SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC 340 (699)
Q Consensus 268 ~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 340 (699)
.+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+..+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-- 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence 65 7888888888888888866 6777766 788888888888877777777888888888888877653210
Q ss_pred CCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCC---cChhhhcCCCCCEEEcccCcCCCCCC-cccCCC
Q 040184 341 SSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGY---IPYWIERLTYLRYLILANNNLEGEVP-IQLCRL 416 (699)
Q Consensus 341 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 416 (699)
..+...+..+++|++|++++|++++. ....+..+++|++|++++|++++..+ ..+..+
T Consensus 191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 00011135677788888888887732 22334566778888888887776553 344556
Q ss_pred CCCCEEECcCCccc
Q 040184 417 KQLRLIDLSNNNIF 430 (699)
Q Consensus 417 ~~L~~L~ls~n~i~ 430 (699)
++|++|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 66777777777665
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5e-26 Score=231.83 Aligned_cols=247 Identities=19% Similarity=0.146 Sum_probs=191.6
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCccc-cccchhhh------hCCCCCCEEEcCCCcCcccCCCCC--CC
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLK-GEFLNWLL------ENNTNLNTLVLRNNSLSGPFRMPI--QP 149 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~-~~~~~~~~------~~l~~L~~L~Ls~n~i~~~~~~~~--~~ 149 (699)
+|++|++++|.+ .+|..+... |+.|++++|.++ ..+|.... .++++|++|++++|.+.+..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 688888888888 556555443 888888888884 45555431 268999999999999998888776 88
Q ss_pred CCCCCEEEccCccCCccCchhhhhc----CCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCcc--chHH-hh
Q 040184 150 HWHLDTLYVSKNFFQGNIPLEIGVY----FPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEI--PEHL-AM 222 (699)
Q Consensus 150 l~~L~~L~l~~n~i~~~~~~~~~~~----~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~ 222 (699)
+++|++|++++|++++. |..+... .++|++|++++|++.+..|..|+.+++|++|++++|++.+.+ +..+ +.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999999855 7665542 279999999999999888899999999999999999987542 2232 35
Q ss_pred cCCCCcEEEccCCcCCc---cCcccccCCCCCcEEEccCCcCCccCC-ccCcCCCCCceEECCCCcCcCcCchhhhccCC
Q 040184 223 SCFNLEFLVLSENSLLG---QLFSKKNYLRKLVSLHLDANYFTGEIP-KSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298 (699)
Q Consensus 223 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 298 (699)
.+++|++|++++|.+.+ .....+..+++|++|++++|.+++..| ..+..+++|+.|++++|+++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 78899999999998873 222344577889999999998887654 45666788899999988887 5666555 78
Q ss_pred CcEEeccCCcccccCCccccCCCCCcEEEcccccCcc
Q 040184 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG 335 (699)
Q Consensus 299 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 335 (699)
|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888765 54 7788888888888888764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.8e-26 Score=245.39 Aligned_cols=150 Identities=21% Similarity=0.173 Sum_probs=94.3
Q ss_pred CCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEc
Q 040184 272 CSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHL 351 (699)
Q Consensus 272 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l 351 (699)
+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..| +..+++|++|++++|.+.+..+ .++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3477888888888777667777777888888888887775544 6777777777777777764332 155666666
Q ss_pred cCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccC-CCCCCCEEECcCCccc
Q 040184 352 SKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLC-RLKQLRLIDLSNNNIF 430 (699)
Q Consensus 352 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~i~ 430 (699)
++|.+.+..+ ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 107 ~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 6666544322 1245566666666666655555555566666666666666554554443 4555666666666554
Q ss_pred c
Q 040184 431 G 431 (699)
Q Consensus 431 ~ 431 (699)
+
T Consensus 183 ~ 183 (487)
T 3oja_A 183 D 183 (487)
T ss_dssp E
T ss_pred c
Confidence 3
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.9e-26 Score=243.89 Aligned_cols=147 Identities=24% Similarity=0.177 Sum_probs=69.0
Q ss_pred CCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcc
Q 040184 250 KLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLS 329 (699)
Q Consensus 250 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 329 (699)
+|++|++++|.+++..|.+|..+++|+.|++++|.+++..| +..+++|+.|++++|.+.+.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 45555555555554444445555555555555555443332 444555555555555444221 11445555555
Q ss_pred cccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhh-cCCCCCEEEcccCcCC
Q 040184 330 ENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE-RLTYLRYLILANNNLE 406 (699)
Q Consensus 330 ~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~ 406 (699)
+|.+.+..+. .+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 5555433322 2344555555555554333322 44445555555555555544444443 3455555555555544
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-23 Score=209.68 Aligned_cols=182 Identities=24% Similarity=0.277 Sum_probs=112.3
Q ss_pred CccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCC
Q 040184 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND 449 (699)
Q Consensus 370 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~ 449 (699)
+++.|++++|++++..+..+.++++|++|++++|+++...+..|..+++|++|++++|.+++..+..+..
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------- 107 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ---------- 107 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc----------
Confidence 4555666666555555555556666666666666665444444555666666666666655433333222
Q ss_pred CCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCc
Q 040184 450 DSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN 529 (699)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 529 (699)
+++|++|++++|.+++..+..|..+++|++|+|++|.
T Consensus 108 -------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 108 -------------------------------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp -------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------------------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 2356666666666665555566666667777777776
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184 530 LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 530 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++|||.|
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 666555556666677777777776665555556666677777777776666555556566666667777777777
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.5e-24 Score=211.55 Aligned_cols=186 Identities=22% Similarity=0.246 Sum_probs=125.9
Q ss_pred ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184 365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN 444 (699)
Q Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~ 444 (699)
|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----- 122 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH----- 122 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-----
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc-----
Confidence 556666777777777666655566666777777777777776666666677777777777777765443333222
Q ss_pred CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc-CCccccccCccCeE
Q 040184 445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE-IPPQISKLTRIRAL 523 (699)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 523 (699)
+++|++|++++|.+++. +|..+..+++|++|
T Consensus 123 ------------------------------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 123 ------------------------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred ------------------------------------------------CCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 34677777777777653 46777777777777
Q ss_pred EccCCcCcccCCccccCCCCCC----EEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCC
Q 040184 524 NLSHNNLTGVIPVTFSNLNQVE----SLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEG 599 (699)
Q Consensus 524 ~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~ 599 (699)
++++|++++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++++.+++++
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 7777777766666666666666 777777777755554443 34677777777777766666666677777777777
Q ss_pred CCCCC
Q 040184 600 NPLLC 604 (699)
Q Consensus 600 Np~~C 604 (699)
||+.|
T Consensus 234 N~~~c 238 (276)
T 2z62_A 234 NPWDC 238 (276)
T ss_dssp SCBCC
T ss_pred Ccccc
Confidence 77777
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=4.2e-24 Score=214.53 Aligned_cols=190 Identities=24% Similarity=0.239 Sum_probs=148.4
Q ss_pred CCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCC
Q 040184 369 SSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDN 448 (699)
Q Consensus 369 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~ 448 (699)
++++.|++++|.+++..+..+..+++|++|++++|++++..+ ...+++|++|++++|+++ .+|..+.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~---------- 97 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQ---------- 97 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTT----------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhc----------
Confidence 467777888887777777777888888888888888774433 267788888888888876 3443332
Q ss_pred CCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCC
Q 040184 449 DDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHN 528 (699)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 528 (699)
.+++|+.|++++|++++..+..|..+++|++|+|++|
T Consensus 98 -------------------------------------------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 98 -------------------------------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp -------------------------------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred -------------------------------------------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 2457888888888888777788889999999999999
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCC
Q 040184 529 NLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPL 608 (699)
Q Consensus 529 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 608 (699)
++++..+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|+++ .+|..+.....++.+.+.+|||.|
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C---- 209 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC---- 209 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC----
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC----
Confidence 999888888888999999999999998666667788899999999999988 456556567788889999999999
Q ss_pred CCCCCCCCCCCC
Q 040184 609 PDCDVAAVPEAS 620 (699)
Q Consensus 609 ~~c~~~~~~~~~ 620 (699)
+|+..|+..|.
T Consensus 210 -~c~~~~l~~wl 220 (290)
T 1p9a_G 210 -NCEILYFRRWL 220 (290)
T ss_dssp -SGGGHHHHHHH
T ss_pred -cCccHHHHHHH
Confidence 77765554443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.7e-23 Score=202.94 Aligned_cols=206 Identities=21% Similarity=0.254 Sum_probs=161.3
Q ss_pred CcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEccc
Q 040184 323 LQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILAN 402 (699)
Q Consensus 323 L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 402 (699)
.+.++++++.++. +|... .++++.|++++|.+.+ ++...|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4445555555442 22211 1345555555555543 2333377888899999999888877777778889999999999
Q ss_pred CcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeec
Q 040184 403 NNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTK 482 (699)
Q Consensus 403 n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (699)
|++.+..+..|..+++|++|++++|.+++..+..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 9998777777888999999999999988766655443
Q ss_pred ceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCccc
Q 040184 483 EISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQL 562 (699)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 562 (699)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+
T Consensus 132 ----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 132 ----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 4589999999999997777779999999999999999998888889999999999999999997777778
Q ss_pred ccCCCCCeeecccCcCcccCCC
Q 040184 563 VELNALAFFSVAHNNLSGKIPE 584 (699)
Q Consensus 563 ~~l~~L~~L~l~~N~l~~~~~~ 584 (699)
..+++|+.|++++|++.+.++.
T Consensus 202 ~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTCTTCCEEECCSSCBCCSSSS
T ss_pred ccccCCCEEEecCCCeeCCCcc
Confidence 9999999999999999887763
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1e-22 Score=203.61 Aligned_cols=221 Identities=22% Similarity=0.206 Sum_probs=158.3
Q ss_pred EEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCC
Q 040184 156 LYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSEN 235 (699)
Q Consensus 156 L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 235 (699)
.+..+..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 444444454 4565443 36888888888887766667888888888888888887 666555567888888888888
Q ss_pred cCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCc-CchhhhccCCCcEEeccCCcccccCC
Q 040184 236 SLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGN-IPAWLGNLSSLYDIMMASNHLQGPIP 314 (699)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~ 314 (699)
.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+.++++|+.|++++|++.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 88777777788888888888888888876666788888888888888888753 47788888888888888888887666
Q ss_pred ccccCCCCCc----EEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhh
Q 040184 315 LEFCQLNYLQ----ILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIE 390 (699)
Q Consensus 315 ~~~~~l~~L~----~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 390 (699)
..+..+++|+ .|++++|.+.+..+..+.. .+|+.|++++|++++..+..+.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-------------------------~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-------------------------IRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-------------------------CCEEEEECCSSCCSCCCTTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCC-------------------------CcccEEECCCCceeecCHhHhc
Confidence 6666666665 7777777776544333222 2566666666666655555566
Q ss_pred cCCCCCEEEcccCcCC
Q 040184 391 RLTYLRYLILANNNLE 406 (699)
Q Consensus 391 ~l~~L~~L~L~~n~l~ 406 (699)
.+++|++|++++|.+.
T Consensus 222 ~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCCSCCEEECCSSCBC
T ss_pred ccccccEEEccCCccc
Confidence 6666777777766665
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.2e-22 Score=202.01 Aligned_cols=205 Identities=22% Similarity=0.281 Sum_probs=158.0
Q ss_pred cCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCE
Q 040184 318 CQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRY 397 (699)
Q Consensus 318 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 397 (699)
..++++++++++++.++...+.. .++++.|++++|.+.+..+. .|..+++|+.|++++|.+++..+. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 34455555555555554322221 24556666666665443333 377888888899988888865443 67888999
Q ss_pred EEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCccccccee
Q 040184 398 LILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESI 477 (699)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (699)
|++++|+++ .+|..+..+++|++|++++|++++..++.+..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 999999988 66777888999999999999988766665544
Q ss_pred EEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 040184 478 MFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGK 557 (699)
Q Consensus 478 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (699)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .
T Consensus 123 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 123 ---------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp ---------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred ---------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 348899999999999887788899999999999999999877778889999999999999999 6
Q ss_pred CCcccccCCCCCeeecccCcCcccC
Q 040184 558 IPPQLVELNALAFFSVAHNNLSGKI 582 (699)
Q Consensus 558 ~p~~l~~l~~L~~L~l~~N~l~~~~ 582 (699)
+|..+..+++|+.+++++|++.+.+
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cChhhcccccCCeEEeCCCCccCcC
Confidence 7888888889999999999998755
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.7e-22 Score=201.39 Aligned_cols=209 Identities=21% Similarity=0.270 Sum_probs=166.7
Q ss_pred hhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCcc
Q 040184 293 LGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIV 372 (699)
Q Consensus 293 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 372 (699)
...+++|+.|++++|.+... ..+..+++|++|++++|.+. +. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-----------------------~~---~~l~~l~~L~ 88 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----------------------DI---SALKELTNLT 88 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-----------------------CC---GGGTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-----------------------Cc---hhhcCCCCCC
Confidence 44556666666666665422 23455556666666655554 21 1267788899
Q ss_pred EEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCC
Q 040184 373 TLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSL 452 (699)
Q Consensus 373 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~ 452 (699)
+|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 89 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------- 155 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------------- 155 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------
T ss_pred EEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-------------
Confidence 9999999998888888889999999999999999777777889999999999999988666554433
Q ss_pred cccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcc
Q 040184 453 VPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTG 532 (699)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 532 (699)
+++|+.|++++|++++..+..+..+++|++|++++|++++
T Consensus 156 ----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 156 ----------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ----------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 4589999999999998888888999999999999999999
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC
Q 040184 533 VIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF 589 (699)
Q Consensus 533 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 589 (699)
..+..+..+++|+.|++++|.+.+. +++|+.++++.|.++|.+|..++.+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 8888899999999999999988743 5579999999999999999876544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.1e-22 Score=202.64 Aligned_cols=182 Identities=17% Similarity=0.180 Sum_probs=92.8
Q ss_pred ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184 23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH 102 (699)
Q Consensus 23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~ 102 (699)
...+++|++|++++|.++ .++ .+..+++|+.|++++|.+.... .+..+++|++|++++|.+++..+..+.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~--~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCcc-ccc--ccccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 445667777777777665 232 3556666666666666654321 113333555555555555555555555555
Q ss_pred CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182 (699)
Q Consensus 103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 182 (699)
+|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|+++ .++...+..+++|++|+
T Consensus 110 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEE
Confidence 5555555555555 233333345555555555555555444444445555555555555544 23333333344455555
Q ss_pred CcCCcccccCCccccCCCCCCEEEccCCcCC
Q 040184 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLT 213 (699)
Q Consensus 183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 213 (699)
+++|.+++..+..+..+++|+.|++++|.+.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 5555444444444444444444444444443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.6e-22 Score=198.94 Aligned_cols=179 Identities=22% Similarity=0.266 Sum_probs=97.7
Q ss_pred ccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECc
Q 040184 346 ITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS 425 (699)
Q Consensus 346 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 425 (699)
.+.++++++.+.. +|.. + .++++.|++++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~~-~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCSS-CCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCccc-cCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4455555555532 2222 1 2355666666666655555555556666666666666655555555556666666666
Q ss_pred CCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCc
Q 040184 426 NNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNK 505 (699)
Q Consensus 426 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 505 (699)
+|++++..+..+.. +++|+.|++++|+
T Consensus 92 ~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~ 118 (251)
T 3m19_A 92 NNQLASLPLGVFDH-----------------------------------------------------LTQLDKLYLGGNQ 118 (251)
T ss_dssp TSCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECCSSC
T ss_pred CCcccccChhHhcc-----------------------------------------------------cCCCCEEEcCCCc
Confidence 66655443333322 2355555555555
Q ss_pred cCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184 506 LTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK 581 (699)
Q Consensus 506 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 581 (699)
+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5554444455555555555555555555554555555555555555555554444555555555555555555544
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.4e-22 Score=210.97 Aligned_cols=261 Identities=17% Similarity=0.147 Sum_probs=136.0
Q ss_pred EEeCCCCCCCCCCCcccccCCCCCCEEeCCCCcccccCCc----ccccCCC-CCcEEEcccCccccccccccCCC--C-C
Q 040184 6 VLSLDLNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSL----EPFFNNS-KLKVFSGECNEIFVESESSHSMT--P-K 77 (699)
Q Consensus 6 ~L~ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~--~-~ 77 (699)
+++++.|+++|.+|. .+...++|++|+|++|.++ ..+. +.+..++ +|++|++++|.+........... . .
T Consensus 2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHH-HHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 467899999977776 5566667999999999987 4554 5566777 77777777777654432211100 0 1
Q ss_pred ccccEEEccCCcCccccchhc----CCC-CCCCEEEcccCccccccchhh---hhC-CCCCCEEEcCCCcCcccCCCCCC
Q 040184 78 FQLESVALSGSGIHATFPKFL----YNQ-HDLEYVDFSDSNLKGEFLNWL---LEN-NTNLNTLVLRNNSLSGPFRMPIQ 148 (699)
Q Consensus 78 ~~L~~L~ls~~~i~~~~~~~l----~~~-~~L~~L~ls~n~~~~~~~~~~---~~~-l~~L~~L~Ls~n~i~~~~~~~~~ 148 (699)
.+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ +.. .++|++|++++|.+.+....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--- 156 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD--- 156 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH---
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH---
Confidence 245555555555554444322 222 455555555555543333222 111 23455555555444421111
Q ss_pred CCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccc----cCC-CCCCEEEccCCcCCCc----cchH
Q 040184 149 PHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI----GDM-NSLEALDLSHNQLTGE----IPEH 219 (699)
Q Consensus 149 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~ 219 (699)
.++..+....++|++|+|++|++++..+..+ ..+ ++|++|++++|.+++. ++..
T Consensus 157 -----------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 157 -----------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp -----------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred -----------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 1111122211256666666666654443322 233 3666666666666521 3333
Q ss_pred HhhcCCCCcEEEccCCcCCccCc----ccccCCCCCcEEEccCCcCCcc-------CCccCcCCCCCceEECCCCcCcCc
Q 040184 220 LAMSCFNLEFLVLSENSLLGQLF----SKKNYLRKLVSLHLDANYFTGE-------IPKSLSNCSHLEGLYMSDNNLYGN 288 (699)
Q Consensus 220 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~l~~n~l~~~ 288 (699)
+....++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33223466666666666544322 2234455666666666653321 123455566666666666666544
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2e-22 Score=209.84 Aligned_cols=226 Identities=21% Similarity=0.185 Sum_probs=110.9
Q ss_pred EEccCCcCccccchhcCCCCCCCEEEcccCccccccch---hhhhCCC-CCCEEEcCCCcCcccCCCCCCCC-----CCC
Q 040184 83 VALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLN---WLLENNT-NLNTLVLRNNSLSGPFRMPIQPH-----WHL 153 (699)
Q Consensus 83 L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~---~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~L 153 (699)
++++.|.+++.+|..+...++|++|++++|.+++..+. ..+.+++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666666666666666666677777777776643331 2235566 67777777766665444333332 566
Q ss_pred CEEEccCccCCccCchhhhhc---C-CCCcEEeCcCCcccccCCcccc----C-CCCCCEEEccCCcCCCccchHHh---
Q 040184 154 DTLYVSKNFFQGNIPLEIGVY---F-PRLVYLNLSRNDFNGSIPSSIG----D-MNSLEALDLSHNQLTGEIPEHLA--- 221 (699)
Q Consensus 154 ~~L~l~~n~i~~~~~~~~~~~---~-~~L~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~~--- 221 (699)
++|++++|++++..+..+... + ++|++|++++|.+++..+..+. . .++|++|++++|.+++..+..+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666654444333321 2 4566666666666544433322 2 24566666666665532222111
Q ss_pred hcCC-CCcEEEccCCcCCccCcccc----cCC-CCCcEEEccCCcCCcc----CCccCcC-CCCCceEECCCCcCcCcCc
Q 040184 222 MSCF-NLEFLVLSENSLLGQLFSKK----NYL-RKLVSLHLDANYFTGE----IPKSLSN-CSHLEGLYMSDNNLYGNIP 290 (699)
Q Consensus 222 ~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~i~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~ 290 (699)
...+ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|+.|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 1222 55555555555543333222 222 3555555555555431 1222222 2345555555555543322
Q ss_pred h----hhhccCCCcEEeccCCc
Q 040184 291 A----WLGNLSSLYDIMMASNH 308 (699)
Q Consensus 291 ~----~~~~l~~L~~L~l~~n~ 308 (699)
. .+..+++|+.|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 1 12333444444444444
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8.3e-21 Score=186.72 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=135.7
Q ss_pred CccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCC
Q 040184 370 SIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDND 449 (699)
Q Consensus 370 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~ 449 (699)
..++++++++.++. +|..+. ++++.|++++|++.+..+..|..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------- 81 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---------- 81 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc----------
Confidence 45677777777764 333333 56777888888877766777777778888888888777655554433
Q ss_pred CCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCc
Q 040184 450 DSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN 529 (699)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 529 (699)
+++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus 82 -------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 118 (251)
T 3m19_A 82 -------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118 (251)
T ss_dssp -------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence 3477778888888776666777777888888888888
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCC
Q 040184 530 LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLP 609 (699)
Q Consensus 530 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~ 609 (699)
+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++++.+++++||+.|
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c----- 193 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC----- 193 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT-----
T ss_pred CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC-----
Confidence 877666667777788888888888776666667777788888888888777777667777777777788888877
Q ss_pred C-CCCCCCCCC
Q 040184 610 D-CDVAAVPEA 619 (699)
Q Consensus 610 ~-c~~~~~~~~ 619 (699)
+ |+..+...|
T Consensus 194 ~~~~~~~l~~~ 204 (251)
T 3m19_A 194 SRCEILYLSQW 204 (251)
T ss_dssp TSTTHHHHHHH
T ss_pred CccccHHHHHH
Confidence 4 554444443
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=196.65 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=168.0
Q ss_pred CCCCEEEcccCccccccchhh--hhCCCCCCEEEcCCCcCcccCCCCC--CCCCCCCEEEccCccCCccCc----hhhhh
Q 040184 102 HDLEYVDFSDSNLKGEFLNWL--LENNTNLNTLVLRNNSLSGPFRMPI--QPHWHLDTLYVSKNFFQGNIP----LEIGV 173 (699)
Q Consensus 102 ~~L~~L~ls~n~~~~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~ 173 (699)
..++.+.+.++.+.+.....+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|++++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 457888888887763222111 1245779999999999998888887 889999999999999986544 2233
Q ss_pred cCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCc--cch-HHhhcCCCCcEEEccCCcCCccCc--c-cccC
Q 040184 174 YFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGE--IPE-HLAMSCFNLEFLVLSENSLLGQLF--S-KKNY 247 (699)
Q Consensus 174 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~-~~~~ 247 (699)
.+++|++|++++|.+.+..+..++.+++|++|++++|++.+. ++. ..+..+++|++|++++|.+..... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478999999999999888888999999999999999987642 222 222467888888888888853211 1 2466
Q ss_pred CCCCcEEEccCCcCCccCCccCcCC---CCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCc
Q 040184 248 LRKLVSLHLDANYFTGEIPKSLSNC---SHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQ 324 (699)
Q Consensus 248 l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 324 (699)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7888888888888887667666665 58888888888887 4555553 6788888888887753 32 56677788
Q ss_pred EEEcccccCc
Q 040184 325 ILDLSENNIS 334 (699)
Q Consensus 325 ~L~l~~n~i~ 334 (699)
.|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 8888887775
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.3e-21 Score=188.16 Aligned_cols=196 Identities=14% Similarity=0.069 Sum_probs=138.1
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCc-cccccchhhhhCCCCCCEEEcCC-CcCcccCCCCCCCCCCCCEE
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENNTNLNTLVLRN-NSLSGPFRMPIQPHWHLDTL 156 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L 156 (699)
+|++|++++|.+++..+..|.++++|++|++++|. ++ .++...|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 67888888888877777778888888888888886 66 55555567788888888887 78877766777778888888
Q ss_pred EccCccCCccCchhhhhcCCCCc---EEeCcCC-cccccCCccccCCCCCC-EEEccCCcCCCccchHHhhcCCCCcEEE
Q 040184 157 YVSKNFFQGNIPLEIGVYFPRLV---YLNLSRN-DFNGSIPSSIGDMNSLE-ALDLSHNQLTGEIPEHLAMSCFNLEFLV 231 (699)
Q Consensus 157 ~l~~n~i~~~~~~~~~~~~~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 231 (699)
++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++ .+|...+.. ++|++|+
T Consensus 111 ~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 111 GIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred eCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence 888888773 564 33356666 7788777 77766666677777777 7888777777 777666543 6677777
Q ss_pred ccCCc-CCccCcccccCC-CCCcEEEccCCcCCccCCccCcCCCCCceEECCCC
Q 040184 232 LSENS-LLGQLFSKKNYL-RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN 283 (699)
Q Consensus 232 L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 283 (699)
+++|. +.+..+..|..+ ++|++|++++|.+++. |.. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 77773 665555666666 6677777777666633 322 4556666666554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.4e-22 Score=206.23 Aligned_cols=202 Identities=22% Similarity=0.244 Sum_probs=96.5
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccc-cchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEE
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGE-FLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLY 157 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 157 (699)
++++|++++|.+.+..+. +..+++|++|++++|.+++. ++. .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 456666666665554443 33456666666666665543 332 235566666666666655544444455555555555
Q ss_pred ccCc-cCCccCchhhhhcCCCCcEEeCcCC-ccccc-CCccccCCC-CCCEEEccCC--cCC-CccchHHhhcCCCCcEE
Q 040184 158 VSKN-FFQGNIPLEIGVYFPRLVYLNLSRN-DFNGS-IPSSIGDMN-SLEALDLSHN--QLT-GEIPEHLAMSCFNLEFL 230 (699)
Q Consensus 158 l~~n-~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~~l~~L~~L 230 (699)
+++| .+++.........+++|++|++++| .+++. .+..+..++ +|++|++++| .++ +.++..+ ..+++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-hhCCCCCEE
Confidence 5555 3443211222223455555555555 55432 344444555 5555555555 232 1223222 235555555
Q ss_pred EccCCc-CCccCcccccCCCCCcEEEccCCc-CCccCCccCcCCCCCceEECCCC
Q 040184 231 VLSENS-LLGQLFSKKNYLRKLVSLHLDANY-FTGEIPKSLSNCSHLEGLYMSDN 283 (699)
Q Consensus 231 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n 283 (699)
++++|. +.+..+..+..+++|++|++++|. +.......++.+++|+.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 555554 333334444444555555555442 11111113444444444444444
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=5.1e-22 Score=208.88 Aligned_cols=241 Identities=18% Similarity=0.214 Sum_probs=138.1
Q ss_pred cchhcCCCCCCCEEEcccCccccccchhh---hhCCCCCCEEEcCCCcC---cccCCCCC-------CCCCCCCEEEccC
Q 040184 94 FPKFLYNQHDLEYVDFSDSNLKGEFLNWL---LENNTNLNTLVLRNNSL---SGPFRMPI-------QPHWHLDTLYVSK 160 (699)
Q Consensus 94 ~~~~l~~~~~L~~L~ls~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~i---~~~~~~~~-------~~l~~L~~L~l~~ 160 (699)
++..+..+++|++|++++|.+++..+..+ +..+++|++|+|++|.+ .+..|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33445555666666666666654433221 24556666666666432 22222222 4556666666666
Q ss_pred ccCCc----cCchhhhhcCCCCcEEeCcCCcccccCCcccc----CC---------CCCCEEEccCCcCC-Cccch--HH
Q 040184 161 NFFQG----NIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG----DM---------NSLEALDLSHNQLT-GEIPE--HL 220 (699)
Q Consensus 161 n~i~~----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~~--~~ 220 (699)
|.+++ .+|..+.. +++|++|+|++|.++...+..+. .+ ++|++|++++|.++ +.++. ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 66654 23333433 56677777777766543333222 22 67777777777765 22332 22
Q ss_pred hhcCCCCcEEEccCCcCCc-----cCcccccCCCCCcEEEccCCcCC----ccCCccCcCCCCCceEECCCCcCcCc---
Q 040184 221 AMSCFNLEFLVLSENSLLG-----QLFSKKNYLRKLVSLHLDANYFT----GEIPKSLSNCSHLEGLYMSDNNLYGN--- 288 (699)
Q Consensus 221 ~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~l~~n~l~~~--- 288 (699)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..++..+..+++|+.|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 3356677777777776652 23335666777777777777764 34556666777777777777776644
Q ss_pred -Cchhhhc--cCCCcEEeccCCcccc----cCCccc-cCCCCCcEEEcccccCcc
Q 040184 289 -IPAWLGN--LSSLYDIMMASNHLQG----PIPLEF-CQLNYLQILDLSENNISG 335 (699)
Q Consensus 289 -~~~~~~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~i~~ 335 (699)
++..+.. +++|+.|++++|.+.+ .+|..+ .++++|+.|++++|.+.+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 3344432 6677777777777665 245544 446777777777776664
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=9e-21 Score=185.05 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCcc-CCccCchhhhhcCCCCcEEeCcC-CcccccCCccccCCCCCCEE
Q 040184 128 NLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNF-FQGNIPLEIGVYFPRLVYLNLSR-NDFNGSIPSSIGDMNSLEAL 205 (699)
Q Consensus 128 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L 205 (699)
+|++|++++|++++..+..+..+++|++|++++|+ ++ .++...+..+++|++|++++ |.+++..+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 34444444444444333344444444444444443 33 23333333344444444444 44444444444455555555
Q ss_pred EccCCcCCCccchHHhhcCCCCc---EEEccCC-cCCccCcccccCCCCCc-EEEccCCcCCccCCccCcCCCCCceEEC
Q 040184 206 DLSHNQLTGEIPEHLAMSCFNLE---FLVLSEN-SLLGQLFSKKNYLRKLV-SLHLDANYFTGEIPKSLSNCSHLEGLYM 280 (699)
Q Consensus 206 ~L~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~l 280 (699)
++++|.++ .+|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++...+..+.. ++|+.|++
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 55555544 3443 22344444 4445444 44433334444445555 5555555544322233333 44555555
Q ss_pred CCCc-CcCcCchhhhcc-CCCcEEeccCCccc
Q 040184 281 SDNN-LYGNIPAWLGNL-SSLYDIMMASNHLQ 310 (699)
Q Consensus 281 ~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~~~ 310 (699)
++|+ +++..+..|.++ ++|+.|++++|+++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 5552 443333444444 44555555554444
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.2e-22 Score=208.85 Aligned_cols=246 Identities=18% Similarity=0.184 Sum_probs=120.1
Q ss_pred ccccCCCCCcEEEcccCcccccccccc--CCCCCccccEEEccCCc---Cccccchhc-------CCCCCCCEEEcccCc
Q 040184 46 EPFFNNSKLKVFSGECNEIFVESESSH--SMTPKFQLESVALSGSG---IHATFPKFL-------YNQHDLEYVDFSDSN 113 (699)
Q Consensus 46 ~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~~~~~~L~~L~ls~~~---i~~~~~~~l-------~~~~~L~~L~ls~n~ 113 (699)
..+..+++|+.|++++|.+........ .+..+++|++|++++|. +++.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 346667778888888777655422211 12334467777777653 333334333 566666666766666
Q ss_pred ccc----ccchhhhhCCCCCCEEEcCCCcCcccCCCCC----CCC---------CCCCEEEccCccCCc-cCch--hhhh
Q 040184 114 LKG----EFLNWLLENNTNLNTLVLRNNSLSGPFRMPI----QPH---------WHLDTLYVSKNFFQG-NIPL--EIGV 173 (699)
Q Consensus 114 ~~~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~l---------~~L~~L~l~~n~i~~-~~~~--~~~~ 173 (699)
+++ .++..+ ..+++|++|+|++|.+....+..+ ..+ ++|++|++++|+++. .++. ..+.
T Consensus 106 l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 664 233333 566666666666666643222111 112 455555555555541 1221 1112
Q ss_pred cCCCCcEEeCcCCcccc-----cCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCC
Q 040184 174 YFPRLVYLNLSRNDFNG-----SIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYL 248 (699)
Q Consensus 174 ~~~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 248 (699)
.+++|++|++++|+++. ..+..+..+++|++|++++|.++... ...++..+..+
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---------------------~~~l~~~l~~~ 243 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---------------------SSALAIALKSW 243 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---------------------HHHHHHHGGGC
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---------------------HHHHHHHHccC
Confidence 24455555555555441 12224444455555555555443000 02333444445
Q ss_pred CCCcEEEccCCcCCcc----CCccCc--CCCCCceEECCCCcCcC----cCchhh-hccCCCcEEeccCCcccccC
Q 040184 249 RKLVSLHLDANYFTGE----IPKSLS--NCSHLEGLYMSDNNLYG----NIPAWL-GNLSSLYDIMMASNHLQGPI 313 (699)
Q Consensus 249 ~~L~~L~L~~n~i~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~ 313 (699)
++|++|++++|.+++. ++.++. .+++|+.|++++|.+++ .+|..+ .++++|+.|++++|.+.+..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5555555555555432 233332 25555555555555554 244444 33556666666666555433
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.2e-21 Score=202.12 Aligned_cols=251 Identities=16% Similarity=0.153 Sum_probs=162.1
Q ss_pred ccEEEccCCcCccccchhcCCC--CCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCEE
Q 040184 80 LESVALSGSGIHATFPKFLYNQ--HDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGP-FRMPIQPHWHLDTL 156 (699)
Q Consensus 80 L~~L~ls~~~i~~~~~~~l~~~--~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 156 (699)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. + ..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 567777776664 3445555 6777777777777755444 2 4677777777777776654 55556777777777
Q ss_pred EccCccCCccCchhhhhcCCCCcEEeCcCC-ccccc-CCccccCCCCCCEEEccCC-cCCCc-cchHHhhcCC-CCcEEE
Q 040184 157 YVSKNFFQGNIPLEIGVYFPRLVYLNLSRN-DFNGS-IPSSIGDMNSLEALDLSHN-QLTGE-IPEHLAMSCF-NLEFLV 231 (699)
Q Consensus 157 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~l~-~L~~L~ 231 (699)
++++|.+++..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++.. +..++ +|++|+
T Consensus 124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEE
T ss_pred eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEE
Confidence 77777776555655554 677777777777 56542 4555667777777777777 66633 3333 34577 777777
Q ss_pred ccCC--cCC-ccCcccccCCCCCcEEEccCCc-CCccCCccCcCCCCCceEECCCCc-CcCcCchhhhccCCCcEEeccC
Q 040184 232 LSEN--SLL-GQLFSKKNYLRKLVSLHLDANY-FTGEIPKSLSNCSHLEGLYMSDNN-LYGNIPAWLGNLSSLYDIMMAS 306 (699)
Q Consensus 232 L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 306 (699)
+++| .+. +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+.++++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 7777 343 3445556667777777777777 555556667777777777777774 3222223566777777777777
Q ss_pred CcccccCCccccCC-CCCcEEEcccccCcccCCCCC
Q 040184 307 NHLQGPIPLEFCQL-NYLQILDLSENNISGSLPSCS 341 (699)
Q Consensus 307 n~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~ 341 (699)
| +.. ..+..+ ..+..|++++|.+++..|...
T Consensus 282 ~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 282 I-VPD---GTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp S-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred c-cCH---HHHHHHHhhCcceEEecccCccccCCcc
Confidence 7 322 222322 235556677777776666554
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.2e-20 Score=188.14 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=151.9
Q ss_pred ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184 23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH 102 (699)
Q Consensus 23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~ 102 (699)
+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+..... +..+++|++|++++|.+++. ..+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~--~~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNV--SAIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCC--GGGTTCT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCc--hhhcCCC
Confidence 456788888888888886 444 47778888888888888766543 34555888888888888764 3688888
Q ss_pred CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182 (699)
Q Consensus 103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 182 (699)
+|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|++++ ++. +..+++|++|+
T Consensus 108 ~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 108 SIKTLDLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLK 179 (308)
T ss_dssp TCCEEECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEE
T ss_pred CCCEEECCCCCCCC-chh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEE
Confidence 99999999998874 544 5788899999999998886544 7788899999999998874 444 44578999999
Q ss_pred CcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCc
Q 040184 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLG 239 (699)
Q Consensus 183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 239 (699)
+++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.+.+
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccC-cccc--ccCCCCCCEEEccCCeeec
Confidence 99999885433 788899999999999998 5553 4578999999999998864
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=189.29 Aligned_cols=225 Identities=17% Similarity=0.160 Sum_probs=158.2
Q ss_pred CCCEEEccCccCCccCchhhh--hcCCCCcEEeCcCCcccccCCccc--cCCCCCCEEEccCCcCCCccc---hHHhhcC
Q 040184 152 HLDTLYVSKNFFQGNIPLEIG--VYFPRLVYLNLSRNDFNGSIPSSI--GDMNSLEALDLSHNQLTGEIP---EHLAMSC 224 (699)
Q Consensus 152 ~L~~L~l~~n~i~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~l 224 (699)
.++.+.+.++.++......+. ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666665422111111 114679999999999998888888 889999999999999986444 2222368
Q ss_pred CCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCcc--C--CccCcCCCCCceEECCCCcCcCcCch----hhhcc
Q 040184 225 FNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGE--I--PKSLSNCSHLEGLYMSDNNLYGNIPA----WLGNL 296 (699)
Q Consensus 225 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l 296 (699)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. .+. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 8999999999999888888888999999999999987642 1 2334678899999999998863 222 35677
Q ss_pred CCCcEEeccCCcccccCCccccCC---CCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccE
Q 040184 297 SSLYDIMMASNHLQGPIPLEFCQL---NYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVT 373 (699)
Q Consensus 297 ~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 373 (699)
++|++|++++|++.+..|..+..+ ++|++|++++|.++ .+|... .++|++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--------------------------~~~L~~ 276 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--------------------------PAKLRV 276 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--------------------------CSCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--------------------------cCCCCE
Confidence 889999999999887777766665 58888888888887 333222 134555
Q ss_pred EECCCCCCCCCcChhhhcCCCCCEEEcccCcCC
Q 040184 374 LDLSYNSFSGYIPYWIERLTYLRYLILANNNLE 406 (699)
Q Consensus 374 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 406 (699)
|++++|++++. |. +..+++|+.|++++|+++
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 55555555543 21 345556666666666554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.6e-20 Score=185.40 Aligned_cols=191 Identities=23% Similarity=0.277 Sum_probs=95.7
Q ss_pred CCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEE
Q 040184 126 NTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEAL 205 (699)
Q Consensus 126 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 205 (699)
+++|++|++++|.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 34444444444444331 1 2334444444444444443 2222 22244455555555554422 234455555555
Q ss_pred EccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcC
Q 040184 206 DLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNL 285 (699)
Q Consensus 206 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 285 (699)
++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 113 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 55555554 3332 2345555555555555543322 4455566666666665553222 55666666666666666
Q ss_pred cCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184 286 YGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334 (699)
Q Consensus 286 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 334 (699)
++..+ +..+++|+.|++++|++.+.. .+..+++|+.|++++|.++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 54322 555666666666666665433 2556666666666666665
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.6e-20 Score=180.24 Aligned_cols=120 Identities=22% Similarity=0.331 Sum_probs=70.2
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 574 (699)
+|+.|+|++|.+++..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..|..|..+++|++|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 44445555555554445555556666666666666665555555566666666666666665555566666666666666
Q ss_pred cCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 040184 575 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA 619 (699)
Q Consensus 575 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~ 619 (699)
+|++++..+..+..+++++.+++++|||.| +|+..|...|
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-----~c~l~~l~~~ 176 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFIC-----DCHLKWLADY 176 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHHH
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCC-----CCccHHHHHH
Confidence 666665555555555666666666666666 5655544333
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.6e-19 Score=186.73 Aligned_cols=244 Identities=18% Similarity=0.136 Sum_probs=158.4
Q ss_pred CEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcE-EEc
Q 040184 154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEF-LVL 232 (699)
Q Consensus 154 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L 232 (699)
++++.++++++ .+|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|.+.+.+|..+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777888887 6777663 478888888888886666678888888888888888765677666666666554 444
Q ss_pred cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCccccc
Q 040184 233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGP 312 (699)
Q Consensus 233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 312 (699)
+.|++....+..|..+++|++|++++|+++...+..+....++..|++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 556666555666666666666666666666444444444444555555332 223322
Q ss_pred CCccccCCC-CCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhc
Q 040184 313 IPLEFCQLN-YLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIER 391 (699)
Q Consensus 313 ~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 391 (699)
.+..|..+. .++.|++++|.++...+..+...+++++++.+++..+.++.++|..+++|++|++++|+++...+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 233333332 4566666666666555555555666677766544445666666888999999999999998665544
Q ss_pred CCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCc
Q 040184 392 LTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNN 428 (699)
Q Consensus 392 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 428 (699)
+.+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 4566677666654333556 47889999999997654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.3e-19 Score=184.47 Aligned_cols=238 Identities=16% Similarity=0.111 Sum_probs=135.9
Q ss_pred CEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcE-EeC
Q 040184 105 EYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVY-LNL 183 (699)
Q Consensus 105 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~-L~L 183 (699)
++++.+++.++ ++|..+ .+++++|+|++|+++.+.+.+|.++++|++|++++|++.+.+|...+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45555666665 555443 2456667777776666555666677777777777777655566666555666554 455
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccC-CcCCccCcccccCCC-CCcEEEccCCcC
Q 040184 184 SRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSE-NSLLGQLFSKKNYLR-KLVSLHLDANYF 261 (699)
Q Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~i 261 (699)
..|++..+.|..|..+++|++|++++|.++ .++...+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 567777666777777777777777777776 55544443455666666654 344444444455443 466677777777
Q ss_pred CccCCccCcCCCCCceEECCC-CcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCC
Q 040184 262 TGEIPKSLSNCSHLEGLYMSD-NNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSC 340 (699)
Q Consensus 262 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 340 (699)
+.+.+.+| ...+|+.|++++ |.++...+..|.++++|+.|++++|+++...+..+ .+|+.|.+.++.-...+|..
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCT
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCc
Confidence 64433333 345666777653 45554444456666677777777776664433333 33444443333222233333
Q ss_pred CCCCCccEEEc
Q 040184 341 SSHSSITQVHL 351 (699)
Q Consensus 341 ~~~~~L~~L~l 351 (699)
..+++|+.+++
T Consensus 243 ~~l~~L~~l~l 253 (350)
T 4ay9_X 243 EKLVALMEASL 253 (350)
T ss_dssp TTCCSCCEEEC
T ss_pred hhCcChhhCcC
Confidence 33444444443
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=5.3e-20 Score=176.60 Aligned_cols=155 Identities=25% Similarity=0.292 Sum_probs=82.7
Q ss_pred cEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCC-cccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCC
Q 040184 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVP-IQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD 450 (699)
Q Consensus 372 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~ 450 (699)
+.+++++|.++. +|..+. +.+++|++++|++++..+ ..|..+++|++|++++|.+++..+..+..
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 456666666654 333222 345566666666664432 33555666666666666655444433332
Q ss_pred CCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184 451 SLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL 530 (699)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 530 (699)
+++|+.|+|++|.+++..+..|..+++|++|+|++|++
T Consensus 80 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 80 ------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred ------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 22555555555555554444555555555555555555
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184 531 TGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI 582 (699)
Q Consensus 531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 582 (699)
++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+.+
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 5555555555555555555555555554555555555555555555555443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=6.3e-19 Score=167.91 Aligned_cols=162 Identities=23% Similarity=0.274 Sum_probs=136.5
Q ss_pred CCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCC
Q 040184 368 RSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGD 447 (699)
Q Consensus 368 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~ 447 (699)
.+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------- 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK-------- 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence 457888899988888777777888899999999999998776777888999999999999987655544433
Q ss_pred CCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccC
Q 040184 448 NDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSH 527 (699)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 527 (699)
+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 99 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 99 ---------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 45899999999999977777789999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCCCCCcCC
Q 040184 528 NNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQF 589 (699)
Q Consensus 528 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 589 (699)
|++++..+..+..+++|++|++++|.+.+ .+++|++|+++.|++++.+|..++.+
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 99998888789999999999999998874 45679999999999999999876544
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=9.1e-20 Score=189.39 Aligned_cols=110 Identities=22% Similarity=0.215 Sum_probs=54.1
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCccc---ccCCCCCee
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQL---VELNALAFF 571 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L 571 (699)
+|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+ ..+++|+.|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 45555555555554444445555555555555555555555555555555555555555553322223 345555555
Q ss_pred ecccCcCcccCCCCCcCCCC--CCCCccCCCCCCC
Q 040184 572 SVAHNNLSGKIPEWTAQFTT--FKEDSYEGNPLLC 604 (699)
Q Consensus 572 ~l~~N~l~~~~~~~~~~~~~--l~~~~~~~Np~~C 604 (699)
++++|+++...+..+..++. ++.+.+.+|||.|
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 55555555433333323332 2445555555555
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=2.1e-19 Score=195.32 Aligned_cols=82 Identities=23% Similarity=0.339 Sum_probs=41.7
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCC-------CEEeCCCCcccccCCcccccCCC
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQV-------ESLDISYNNLNGKIPPQLVELNA 567 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~ 567 (699)
+|+.|++++|.+++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 45555555555554 333 33 55555555555555 3333 332 44 55566666555 34555555555
Q ss_pred CCeeecccCcCcccCCCC
Q 040184 568 LAFFSVAHNNLSGKIPEW 585 (699)
Q Consensus 568 L~~L~l~~N~l~~~~~~~ 585 (699)
|+.|++++|++++.+|..
T Consensus 232 L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRES 249 (571)
T ss_dssp TEEEECCSSSCCHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHH
Confidence 666666666555554443
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.4e-18 Score=166.74 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=128.9
Q ss_pred cEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCC
Q 040184 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDS 451 (699)
Q Consensus 372 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~ 451 (699)
+.++++++.++.+ |..+. ++++.|++++|++++..+..|..+++|+.|++++|++++..|..+..
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 5677888777743 43333 67888888888888777778888888999999999888777766654
Q ss_pred CcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCc
Q 040184 452 LVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLT 531 (699)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 531 (699)
+++|++|+|++|.++...+..|..+++|++|+|++|+++
T Consensus 79 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 79 -----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 348888999999998776777889999999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184 532 GVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 532 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
+..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8888999999999999999999998777788899999999999999987554
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=166.91 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=136.3
Q ss_pred CEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCC-ccccCCccCCCCCCCCCcccccccccccccCCCCccccc
Q 040184 396 RYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPG-CLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474 (699)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (699)
+.+++++|.++. +|..+. +.++.|++++|.+++..+. .+..
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~----------------------------------- 55 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKK----------------------------------- 55 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGG-----------------------------------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhcc-----------------------------------
Confidence 588999999884 555443 4578999999998876442 2332
Q ss_pred ceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184 475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554 (699)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 554 (699)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 56 ------------------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 56 ------------------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred ------------------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 45889999999999988777899999999999999999988888899999999999999999
Q ss_pred cccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184 555 NGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 620 (699)
Q Consensus 555 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~ 620 (699)
++..|..|..+++|++|++++|++++..|..+..+++++.+++++||+.| +|+..|...|.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c-----~c~l~~l~~~~ 178 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC-----NCYLAWLGEWL 178 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC-----SGGGHHHHHHH
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC-----CCchHHHHHHH
Confidence 98888889999999999999999998888888888899999999999999 78876665554
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.9e-18 Score=166.88 Aligned_cols=156 Identities=22% Similarity=0.236 Sum_probs=100.9
Q ss_pred ccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCC
Q 040184 371 IVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD 450 (699)
Q Consensus 371 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~ 450 (699)
.+.++++++.++.. |..+. ++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..
T Consensus 21 ~~~v~c~~~~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcCcc-CCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 45677777777643 33222 67777888887777766777777777777777777775443333322
Q ss_pred CCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184 451 SLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL 530 (699)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 530 (699)
+++|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus 87 ------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 87 ------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 34666666766666655555566666666666666666
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184 531 TGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
+ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6 455566666666666666666665555556666666666666666665544
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.3e-18 Score=164.03 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL 256 (699)
Q Consensus 177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 256 (699)
++++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555555555444444555555555555555555 444444444555555555555555444444555555555555
Q ss_pred cCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCccc
Q 040184 257 DANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGS 336 (699)
Q Consensus 257 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 336 (699)
++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+. +.+++|+.|+++.|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 555555444444555555555555555555444444555555555555555443 2334555555555555554
Q ss_pred CCC
Q 040184 337 LPS 339 (699)
Q Consensus 337 ~~~ 339 (699)
+|.
T Consensus 181 ip~ 183 (208)
T 2o6s_A 181 VRN 183 (208)
T ss_dssp BBC
T ss_pred eec
Confidence 443
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8.5e-18 Score=162.33 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=112.7
Q ss_pred CCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCccccc
Q 040184 395 LRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKE 474 (699)
Q Consensus 395 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (699)
-+.+++++++++ .+|..+. ++|++|++++|.+++..|..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~----------------------------------- 62 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS----------------------------------- 62 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC-----------------------------------
Confidence 456777777776 4444332 67788888888877666655543
Q ss_pred ceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184 475 ESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554 (699)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 554 (699)
+++|+.|+|++|+++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 63 ------------------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 63 ------------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp ------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 34777888888888766666677788888888888888777777777788888888888888
Q ss_pred cccCCcccccCCCCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184 555 NGKIPPQLVELNALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 555 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
+ .+|..+..+++|++|++++|++++..+..+..+++++.+++.+||+.|
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 7 667777778888888888888877666667777777888888888887
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=9.8e-18 Score=182.22 Aligned_cols=125 Identities=25% Similarity=0.301 Sum_probs=57.5
Q ss_pred CCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEc
Q 040184 177 RLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHL 256 (699)
Q Consensus 177 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 256 (699)
+|++|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+.+ +|. +. ++|+.|++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 44444444444443 222 3344444444444444 2333 23444444444444443 222 32 44555555
Q ss_pred cCCcCCccCCccCcCCCCC-------ceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccC
Q 040184 257 DANYFTGEIPKSLSNCSHL-------EGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQ 319 (699)
Q Consensus 257 ~~n~i~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 319 (699)
++|.++ .+|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+.+..|..+..
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 555554 2333 332 34 55556555555 34444555556666666666555555554443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=166.96 Aligned_cols=152 Identities=24% Similarity=0.388 Sum_probs=120.0
Q ss_pred ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184 365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN 444 (699)
Q Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~ 444 (699)
+..+++|++|++++|++++..+ +..+++|++|++++|++++ . ..+..+++|++|++++|.+++. + .+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~-~-~l~------ 131 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI-N-GLV------ 131 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC-G-GGG------
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC-h-hhc------
Confidence 5667788888888888876544 7788888888888888874 2 3478888888888888888642 1 121
Q ss_pred CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEE
Q 040184 445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN 524 (699)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 524 (699)
.+++|+.|++++|++++. ..+..+++|++|+
T Consensus 132 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 132 -----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred -----------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 245888899999988864 5788899999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCccc
Q 040184 525 LSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGK 581 (699)
Q Consensus 525 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 581 (699)
+++|++++..+ +..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++..
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 99999987654 8889999999999999985 44 488899999999999988753
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=9.4e-18 Score=174.18 Aligned_cols=176 Identities=24% Similarity=0.225 Sum_probs=94.3
Q ss_pred CEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCcccc-CCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEc
Q 040184 154 DTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIG-DMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVL 232 (699)
Q Consensus 154 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 232 (699)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..+. .+++|++|++++|.++ .++...+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 34455555544 3444332 2455555555555555455454 5555666666666555 444444445555666666
Q ss_pred cCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhh---hccCCCcEEeccCCcc
Q 040184 233 SENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWL---GNLSSLYDIMMASNHL 309 (699)
Q Consensus 233 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~~ 309 (699)
++|.+....+..|..+++|++|++++|.+++..+.+|..+++|+.|++++|++++..+..| ..+++|+.|++++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6555555555555556666666666666655555556666666666666666654333333 3455666666666665
Q ss_pred cccCCccccCCCC--CcEEEcccccCc
Q 040184 310 QGPIPLEFCQLNY--LQILDLSENNIS 334 (699)
Q Consensus 310 ~~~~~~~~~~l~~--L~~L~l~~n~i~ 334 (699)
....+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 5444444444544 255555555543
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=6.7e-17 Score=162.15 Aligned_cols=171 Identities=23% Similarity=0.369 Sum_probs=85.3
Q ss_pred hCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCC
Q 040184 124 ENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLE 203 (699)
Q Consensus 124 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 203 (699)
..+++|++|++++|.+... ..+..+++|++|++++|++++ ++. +..+++|++|++++|.+++ + ..+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 4566777777777766643 235556666666666666653 332 2235556666666666553 2 2255555555
Q ss_pred EEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCC
Q 040184 204 ALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDN 283 (699)
Q Consensus 204 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 283 (699)
+|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|+.|++++|
T Consensus 116 ~L~L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--------------------------~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 116 SLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSS
T ss_pred EEECCCCcCC-CChh--hcCCCCCCEEEccCCcCCcc--------------------------hhhccCCCCCEEEccCC
Confidence 5555555555 3321 12344444554444444332 23444444444444444
Q ss_pred cCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184 284 NLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334 (699)
Q Consensus 284 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 334 (699)
++++..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 4443222 44444444444444444432 1 2444555555555555544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=8.9e-17 Score=176.79 Aligned_cols=171 Identities=24% Similarity=0.334 Sum_probs=87.0
Q ss_pred CCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCE
Q 040184 125 NNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEA 204 (699)
Q Consensus 125 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 204 (699)
.+++|+.|++++|.+... ..+..+++|+.|+|++|++++ ++. +..+++|+.|+|++|.+.+ + ..+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 344444444444444432 124444455555555555442 222 2224555555555555543 2 24555555666
Q ss_pred EEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCc
Q 040184 205 LDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNN 284 (699)
Q Consensus 205 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 284 (699)
|+|++|.+. .++. +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.
T Consensus 114 L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 666666555 3332 23455555555555555433 345555566666666666554433 5555666666666665
Q ss_pred CcCcCchhhhccCCCcEEeccCCcccc
Q 040184 285 LYGNIPAWLGNLSSLYDIMMASNHLQG 311 (699)
Q Consensus 285 l~~~~~~~~~~l~~L~~L~l~~n~~~~ 311 (699)
+.+. ..+..+++|+.|++++|.+.+
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5542 235555666666666665553
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.7e-17 Score=154.01 Aligned_cols=154 Identities=17% Similarity=0.256 Sum_probs=120.4
Q ss_pred cCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCC
Q 040184 366 FNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNN 445 (699)
Q Consensus 366 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~ 445 (699)
..+++|+.|++++|.++. ++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 456678888888888874 34 5788888999999988765 3346888889999999999887666655443
Q ss_pred CCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEc
Q 040184 446 GDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNL 525 (699)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 525 (699)
+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 111 -----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 111 -----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp -----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred -----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 458888999999998777888899999999999
Q ss_pred cCCc-CcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcc
Q 040184 526 SHNN-LTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSG 580 (699)
Q Consensus 526 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 580 (699)
++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++..
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998 66 444 68889999999999999985 44 77888999999999998753
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=156.25 Aligned_cols=121 Identities=24% Similarity=0.398 Sum_probs=112.5
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV 573 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 573 (699)
++++.|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|+|++..|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47899999999998 67789999999999999999999998899999999999999999999888889999999999999
Q ss_pred ccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184 574 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 620 (699)
Q Consensus 574 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~ 620 (699)
++|+++...+..+..++.++.+++++|||.| +|+..|+..|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C-----~c~l~~l~~~~ 151 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC-----DCNMQWLSDWV 151 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC-----SGGGHHHHHHH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec-----CCcCHHHHHHH
Confidence 9999998888888889999999999999999 89887776665
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.2e-16 Score=175.90 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=123.1
Q ss_pred CcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCC
Q 040184 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY 378 (699)
Q Consensus 299 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~ 378 (699)
+..+.+..+.+....+ +..+++|+.|++++|.+.. ++. +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~~-------------------------l~~l~~L~~L~Ls~ 74 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-------------------------IQYLPNVTKLFLNG 74 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CTT-------------------------GGGCTTCCEEECTT
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-ChH-------------------------HccCCCCCEEEeeC
Confidence 3444455554443322 3456677777777776652 121 55566777777777
Q ss_pred CCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccc
Q 040184 379 NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNH 458 (699)
Q Consensus 379 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (699)
|.+.+..+ +..+++|+.|+|++|++.+ ++ .+..+++|+.|++++|.+.+. + .+.
T Consensus 75 N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~-~l~-------------------- 128 (605)
T 1m9s_A 75 NKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLV-------------------- 128 (605)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G-GGG--------------------
T ss_pred CCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c-ccc--------------------
Confidence 77765444 6677777777777777763 22 566777777777777776532 1 111
Q ss_pred cccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccc
Q 040184 459 NVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTF 538 (699)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 538 (699)
.+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +
T Consensus 129 ---------------------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 129 ---------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp ---------------------------------GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred ---------------------------------CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 235677777777777754 557777777777777777776554 6
Q ss_pred cCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccCC
Q 040184 539 SNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKIP 583 (699)
Q Consensus 539 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 583 (699)
..+++|+.|+|++|+|++. ..+..+++|+.|++++|++++...
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 7777777777777777743 356777777777777777765433
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.9e-16 Score=148.19 Aligned_cols=129 Identities=26% Similarity=0.357 Sum_probs=68.6
Q ss_pred cEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCc-ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCC
Q 040184 372 VTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPI-QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDD 450 (699)
Q Consensus 372 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~ 450 (699)
+.+++++|+++. +|..+. .++++|++++|++++..+. .|..+++|++|++++|++++..|..+..
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 456666666653 333222 2566666666666544433 3555566666666666655544444332
Q ss_pred CCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcC
Q 040184 451 SLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNL 530 (699)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 530 (699)
+++|+.|++++|++++..+..|..+++|++|+|++|++
T Consensus 77 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 77 ------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp ------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 22555555555555555555555555555555555555
Q ss_pred cccCCccccCCCCCCEEeCCCCcccc
Q 040184 531 TGVIPVTFSNLNQVESLDISYNNLNG 556 (699)
Q Consensus 531 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ 556 (699)
++..|..|..+++|++|++++|.+.+
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55555555555555555555555553
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.2e-17 Score=154.71 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=108.5
Q ss_pred CcccEEEccCCccCccCCc-cccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184 494 NKMYGVDLSCNKLTGEIPP-QISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS 572 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 572 (699)
.+++.|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3788999999999976664 489999999999999999999999999999999999999999988888899999999999
Q ss_pred cccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 040184 573 VAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEA 619 (699)
Q Consensus 573 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~ 619 (699)
+++|++++..|..+..+++++.+++++||+.| +|...|+..|
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c-----~c~l~~~~~~ 150 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-----NCHLAWFAEW 150 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC-----SGGGHHHHHH
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC-----cCcchHHHHH
Confidence 99999999999999889999999999999999 6766554443
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1.3e-15 Score=159.28 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=211.0
Q ss_pred ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184 23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH 102 (699)
Q Consensus 23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~ 102 (699)
+..+..++.+.+.++ ++ .++..+|.++ +|+.+++..+ +.... ..+|..+ +|+.+.+.+ .+..+.+.+|.+|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~--~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIG--DMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp EEECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEEC--TTTTTTC-CCCEEECCT-TCCEECSSTTTTCT
T ss_pred EEecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEEC--HHhcCCC-CceEEEeCC-CccEehHHHhhCcc
Confidence 445678888888765 43 5676778875 7888888776 43332 2233444 789999886 67777778899999
Q ss_pred CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEe
Q 040184 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLN 182 (699)
Q Consensus 103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 182 (699)
+|+.++++.|.++ .++...|. +++|+.+.+.. .+..+...+|..+++|+.+++..+ ++ .++...|.. .+|+.+.
T Consensus 181 ~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 181 NLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVK 254 (401)
T ss_dssp TCCEEECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEE
T ss_pred cCCeeecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEE
Confidence 9999999998888 67777766 68999999974 477777888999999999999875 54 677777775 6899999
Q ss_pred CcCCcccccCCccccCCCCCCEEEccCCcCC----CccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccC
Q 040184 183 LSRNDFNGSIPSSIGDMNSLEALDLSHNQLT----GEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDA 258 (699)
Q Consensus 183 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 258 (699)
+ .+.++.+...+|.+|++|+.+++.++.+. ..++...|.+|++|+.+++.. .+.......|.++.+|+.+.+..
T Consensus 255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 L-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp E-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred e-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 9 45566677888999999999999887653 247888888999999999984 57767778899999999999966
Q ss_pred CcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccC-CCcEEeccCCccc
Q 040184 259 NYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLS-SLYDIMMASNHLQ 310 (699)
Q Consensus 259 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~ 310 (699)
+ ++.+...+|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5 666777899999 999999999988766677787774 7888988877544
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.3e-16 Score=163.53 Aligned_cols=289 Identities=12% Similarity=-0.010 Sum_probs=147.7
Q ss_pred CCCCCEEeCCCCcccccCCcccccC-CCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCC----
Q 040184 26 LTSIERLFLSYNQFQIPFSLEPFFN-NSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYN---- 100 (699)
Q Consensus 26 l~~L~~L~Ls~n~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~---- 100 (699)
++++++|.++++- . ......+.. +++|+.|||++|++....... ...+.++.+.+..+. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~-~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-N-AEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-C-HHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred hCceeEEEEeccc-c-HHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccc---cCHHHhcccccc
Confidence 5678888888652 1 112223444 788888899888876211111 111123445544442 23455666
Q ss_pred ----CCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccC---CccCchhhhh
Q 040184 101 ----QHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFF---QGNIPLEIGV 173 (699)
Q Consensus 101 ----~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i---~~~~~~~~~~ 173 (699)
|++|+.+++.. .++ .+++..|.+|++|+.+++++|.+..+.+.+|..+.++..+....+.. ...+....+.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 77777777777 665 56666677777777777777777666667777666666555443211 0011222222
Q ss_pred cCCCCc-EEeCcCCcc-cccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCC
Q 040184 174 YFPRLV-YLNLSRNDF-NGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKL 251 (699)
Q Consensus 174 ~~~~L~-~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 251 (699)
.+..|+ .+.+....- .......-....+++.+.+.++-.. .-...+...+++|+.+++++|.+.......|.++.+|
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 233443 333322110 0000000112233444444433111 1111222235566666666555555555555556666
Q ss_pred cEEEccCCcCCccCCccCcCCCCCc-eEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEE
Q 040184 252 VSLHLDANYFTGEIPKSLSNCSHLE-GLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILD 327 (699)
Q Consensus 252 ~~L~L~~n~i~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 327 (699)
+++++++| ++.+.+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++.+|.+..+.+.+|.++++|+.+.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666555 4445555556666665 565555 44444445555555555555555555555555555555555553
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=4.6e-19 Score=193.87 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=114.0
Q ss_pred cCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCc-------------ccccCCccccCCCCCcEEE-cccccCcc
Q 040184 270 SNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNH-------------LQGPIPLEFCQLNYLQILD-LSENNISG 335 (699)
Q Consensus 270 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~i~~ 335 (699)
..+++|+.|++++|+++ .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 44566777777777765 566667777777777765553 3344555566666666666 5555432
Q ss_pred cCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCC
Q 040184 336 SLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCR 415 (699)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 415 (699)
.|..+.+.+|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..+..
T Consensus 424 ---------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 23333344443322110 124555555555543 232 444445555555555444 33444444
Q ss_pred CCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCc
Q 040184 416 LKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNK 495 (699)
Q Consensus 416 l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 495 (699)
+++
T Consensus 485 l~~----------------------------------------------------------------------------- 487 (567)
T 1dce_A 485 LRC----------------------------------------------------------------------------- 487 (567)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 444
Q ss_pred ccEEEccCCccCccCCccccccCccCeEEccCCcCcccC-CccccCCCCCCEEeCCCCcccccCCc---ccccCCCCCee
Q 040184 496 MYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVI-PVTFSNLNQVESLDISYNNLNGKIPP---QLVELNALAFF 571 (699)
Q Consensus 496 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L 571 (699)
|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++.+++|+.|+|++|++++..|. .+..+++|+.|
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 4444444444443 34 5666777777777777777665 67777777777777777777754442 22346677776
Q ss_pred ec
Q 040184 572 SV 573 (699)
Q Consensus 572 ~l 573 (699)
++
T Consensus 566 ~l 567 (567)
T 1dce_A 566 LT 567 (567)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=5.3e-17 Score=166.32 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=36.1
Q ss_pred cCCccccccCccC-eEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeee
Q 040184 509 EIPPQISKLTRIR-ALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFS 572 (699)
Q Consensus 509 ~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 572 (699)
..+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+..|..+++|+.++
T Consensus 264 I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 264 IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 3344555555565 666655 45545555666666666666666666555555666666666554
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=7.9e-17 Score=158.96 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=123.5
Q ss_pred ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184 365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN 444 (699)
Q Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~ 444 (699)
+..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|+.|++++|++++. |...
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~~~------- 104 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NGIP------- 104 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TTCC-------
T ss_pred hhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cccc-------
Confidence 66778888899998888754 3 67888999999999999885444 88899999999999988642 2100
Q ss_pred CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEE
Q 040184 445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALN 524 (699)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 524 (699)
. ++|+.|++++|++++. ..+..+++|++|+
T Consensus 105 -----------------------------------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 105 -----------------------------------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILS 134 (263)
T ss_dssp -----------------------------------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEE
T ss_pred -----------------------------------------------c-CcccEEEccCCccCCC--hhhcCcccccEEE
Confidence 1 4788999999999863 3588999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccCcCcccC
Q 040184 525 LSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHNNLSGKI 582 (699)
Q Consensus 525 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 582 (699)
+++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 135 Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 135 IRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 999999865 3688999999999999999865 67888999999999999988653
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=2.2e-15 Score=158.46 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=26.4
Q ss_pred ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECc
Q 040184 365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS 425 (699)
Q Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 425 (699)
|.+|.+|+.+++.. .++.+...+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++.
T Consensus 316 F~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 316 FESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 44444444444432 233333444444444554444433 333334444444555544443
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.9e-16 Score=147.83 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=81.7
Q ss_pred CCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEE
Q 040184 176 PRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLH 255 (699)
Q Consensus 176 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 255 (699)
++|++|++++|.+. .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45555555555555 233 3555555666666655444 332 1 23455566666666655554555555666666666
Q ss_pred ccCCcCCccCCccCcCCCCCceEECCCCc-CcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccccCc
Q 040184 256 LDANYFTGEIPKSLSNCSHLEGLYMSDNN-LYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNIS 334 (699)
Q Consensus 256 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 334 (699)
+++|.+++..+..++.+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 66666655455555666666666666665 43 233 455566666666666665532 2 4555666666666666554
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=4.7e-15 Score=154.95 Aligned_cols=265 Identities=14% Similarity=0.125 Sum_probs=168.6
Q ss_pred CCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEc
Q 040184 249 RKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDL 328 (699)
Q Consensus 249 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 328 (699)
..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.+ .+..+.+.+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44445554432 333444555553 5666666554 444444555553 566666664 444455566667777777777
Q ss_pred ccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCC
Q 040184 329 SENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGE 408 (699)
Q Consensus 329 ~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 408 (699)
.+|.+.......+.+.+|+.+.+..+ + ..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 77666655555566667777777644 3 3455556888888888888864 56566777777 788888884 456656
Q ss_pred CCcccCCCCCCCEEECcCCccc-----ccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecc
Q 040184 409 VPIQLCRLKQLRLIDLSNNNIF-----GQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKE 483 (699)
Q Consensus 409 ~~~~~~~l~~L~~L~ls~n~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (699)
...+|.+|++|+.+++.+|.+. ...+.+|.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~--------------------------------------------- 297 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE--------------------------------------------- 297 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---------------------------------------------
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---------------------------------------------
Confidence 6778888889999988877664 12222222
Q ss_pred eeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccc
Q 040184 484 ISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLV 563 (699)
Q Consensus 484 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 563 (699)
.+++|+.+++. +.++.....+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.
T Consensus 298 --------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 298 --------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp --------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred --------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 23466677776 3466555667777777777777554 555666777777 777777777777655556666
Q ss_pred cCC-CCCeeecccCcCc
Q 040184 564 ELN-ALAFFSVAHNNLS 579 (699)
Q Consensus 564 ~l~-~L~~L~l~~N~l~ 579 (699)
.++ .++.|++..+.+.
T Consensus 367 ~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 367 GFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSCTTCCEEEECGGGHH
T ss_pred CCCCCccEEEeCHHHHH
Confidence 663 5677777666543
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=4.5e-15 Score=156.02 Aligned_cols=247 Identities=12% Similarity=0.075 Sum_probs=113.9
Q ss_pred CcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccch
Q 040184 139 LSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPE 218 (699)
Q Consensus 139 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 218 (699)
++.+...+|.++.+|+.+.+..+ ++ .++...|..+++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +. .+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence 44455566666666766666532 44 455555555566666666433 34344455555666655554432 22 3333
Q ss_pred HHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCC
Q 040184 219 HLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSS 298 (699)
Q Consensus 219 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 298 (699)
..|.++..++.. .... .......+|.++++|+.+.+.++. .......|.++.+
T Consensus 134 ~aF~~~~~~~~~------------------------~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 134 EAFKGCDFKEIT------------------------IPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK 186 (394)
T ss_dssp TTTTTCCCSEEE------------------------CCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred eeeecccccccc------------------------cCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCC
Confidence 333333222111 1111 111223445555555555554432 2233344555555
Q ss_pred CcEEeccCCcccccCCccccCCCCCcEEEcccccCcccCCCCCCCCCccEEEccCccccccCCcccccCCCCccEEECCC
Q 040184 299 LYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISGSLPSCSSHSSITQVHLSKNMLYGPLRYGTFFNRSSIVTLDLSY 378 (699)
Q Consensus 299 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~ 378 (699)
|+.+.+..+ +..+...+|..+..|+.+.+..+... .....+...+|+.+.+..... .+...+|..+..++.+.+..
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECC
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCce--ecccccccccccceeEEcCC
Confidence 555555444 22233445555555555555443322 222223344455554433211 12223355555666665554
Q ss_pred CCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECc
Q 040184 379 NSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLS 425 (699)
Q Consensus 379 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 425 (699)
+.. ......|..+..++.+....+.+. ..+|..+.+|+.+.+.
T Consensus 263 ~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 263 NKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp TTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred Ccc-eeeccccccccccceeccCceeec---cccccccccccccccc
Confidence 432 234445555555555555443322 2234555555555553
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.3e-16 Score=155.59 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=86.0
Q ss_pred cccEEEccCCcCccccchhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEc
Q 040184 79 QLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYV 158 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 158 (699)
+++.++++++.+++.. .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 4555556666554432 3455566666666666665 344 2 3556666666666666655433 555566666666
Q ss_pred cCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCC
Q 040184 159 SKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLL 238 (699)
Q Consensus 159 ~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 238 (699)
++|+++ .+|.... ++|++|++++|++++. ..+..+++|+.|++++|+++ .++ .+..+++|++|++++|.+.
T Consensus 93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCc
Confidence 666655 2332111 4555666666555532 23555555555555555555 333 1233455555555555544
Q ss_pred ccCcccccCCCCCcEEEccCCcCC
Q 040184 239 GQLFSKKNYLRKLVSLHLDANYFT 262 (699)
Q Consensus 239 ~~~~~~~~~l~~L~~L~L~~n~i~ 262 (699)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 33 33444444444444444443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=7.4e-19 Score=192.24 Aligned_cols=188 Identities=18% Similarity=0.093 Sum_probs=98.6
Q ss_pred CCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCC
Q 040184 99 YNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRL 178 (699)
Q Consensus 99 ~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L 178 (699)
..+++|+.|++++|.++ .+|..+ +++++|+.|++++|......+. .+..+...+..|..+.. +++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~-l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQY-FSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHH-HHHH
T ss_pred ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHH-HHhc
Confidence 56778888888888886 777775 7778888888765531100000 00011122233333332 4455
Q ss_pred cEEe-CcCCc-------------ccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCccc
Q 040184 179 VYLN-LSRND-------------FNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSK 244 (699)
Q Consensus 179 ~~L~-L~~n~-------------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 244 (699)
+.|+ ++.|. +....+ ..|+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..
T Consensus 412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred ccCcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchh
Confidence 5555 33332 221111 13555666666555 3453 234555555555555554 44555
Q ss_pred ccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcC-chhhhccCCCcEEeccCCccccc
Q 040184 245 KNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNI-PAWLGNLSSLYDIMMASNHLQGP 312 (699)
Q Consensus 245 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~ 312 (699)
+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+.+.
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5555555555555555553 33 4555555555555555555443 55555555555555555555543
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.2e-16 Score=180.38 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=115.7
Q ss_pred CCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCCCCCE
Q 040184 27 TSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQHDLEY 106 (699)
Q Consensus 27 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~~L~~ 106 (699)
+.++.|+|++|.+.. .+ ...|+.++|+.+. +..++++.|.+. ..+..+..++.|+.
T Consensus 173 ~~~~~l~L~~n~~~~-~~------~~~l~~l~Ls~~~----------------i~~~~~~~n~~~-~~~~~~~~l~~L~~ 228 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-AN------QALLQHKKLSQYS----------------IDEDDDIENRMV-MPKDSKYDDQLWHA 228 (727)
T ss_dssp -------------------------------------------------------------------------CCCCCCE
T ss_pred CccceEEeeCCCCCc-ch------hhHhhcCccCccc----------------ccCcccccccee-cChhhhccCCCCcE
Confidence 456667776666652 22 1234444555443 334445555554 56778889999999
Q ss_pred EEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCC
Q 040184 107 VDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRN 186 (699)
Q Consensus 107 L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n 186 (699)
|+|++|.+. .+|..++ ++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|
T Consensus 229 L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N 303 (727)
T 4b8c_D 229 LDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDN 303 (727)
T ss_dssp EECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSS
T ss_pred EECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCC
Confidence 999999998 7887764 8999999999999998 67788899999999999999998 78888766 789999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCC-------
Q 040184 187 DFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDAN------- 259 (699)
Q Consensus 187 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------- 259 (699)
.++ .+|..|+.+++|+.|+|++|.+++.+|..+......+..+++++|.+.+.+|. .|+.|+++.|
T Consensus 304 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~ 376 (727)
T 4b8c_D 304 MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREY 376 (727)
T ss_dssp CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------
T ss_pred CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccccccccc
Confidence 997 67888999999999999999999777766543212233467888888776654 3455666665
Q ss_pred -cCCccCCccCcCCCCCceEECCCCcC
Q 040184 260 -YFTGEIPKSLSNCSHLEGLYMSDNNL 285 (699)
Q Consensus 260 -~i~~~~~~~~~~l~~L~~L~l~~n~l 285 (699)
.+.+..+..+..+..+....+++|.+
T Consensus 377 ~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 377 DSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -------------------------CC
T ss_pred CCccccccchhhcccccceeeeecccc
Confidence 22222223334444444555555544
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.9e-15 Score=139.23 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=74.0
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV 573 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 573 (699)
++|+.|++++|.+++..+..|.++++|++|+|++|+++++.|..|..+++|++|+|++|+++...+..|..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 36677777777777666777888888999999999998888888888999999999999998666667888899999999
Q ss_pred ccCcCcccCC
Q 040184 574 AHNNLSGKIP 583 (699)
Q Consensus 574 ~~N~l~~~~~ 583 (699)
++|++.+.+.
T Consensus 134 ~~N~~~C~c~ 143 (193)
T 2wfh_A 134 GANPLYCDCN 143 (193)
T ss_dssp CSSCEECSGG
T ss_pred CCCCeecCCc
Confidence 9999887554
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2e-15 Score=138.20 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=61.6
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCC-ccccCCCCCCEEeCCCCcccccCC---cccccCCCCC
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNGKIP---PQLVELNALA 569 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~ 569 (699)
++|+.|++++|.+++.+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 456666666666665566666677788888888887775432 677778888888888888875544 4677788888
Q ss_pred eeecccCcCcc
Q 040184 570 FFSVAHNNLSG 580 (699)
Q Consensus 570 ~L~l~~N~l~~ 580 (699)
+|++++|.+..
T Consensus 151 ~L~l~~n~~~~ 161 (168)
T 2ell_A 151 YLDGYDREDQE 161 (168)
T ss_dssp EETTEETTSCB
T ss_pred EecCCCCChhh
Confidence 88888887754
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.6e-15 Score=137.39 Aligned_cols=137 Identities=26% Similarity=0.304 Sum_probs=113.4
Q ss_pred CCCccEEECCCCCCC-CCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCC
Q 040184 368 RSSIVTLDLSYNSFS-GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNG 446 (699)
Q Consensus 368 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~ 446 (699)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 467899999999987 56677788899999999999998865 67888999999999999998665544432
Q ss_pred CCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCC-ccccccCccCeEEc
Q 040184 447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIP-PQISKLTRIRALNL 525 (699)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 525 (699)
+++|+.|++++|.+++..+ ..+..+++|++|++
T Consensus 94 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 94 ----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 4589999999999986432 77899999999999
Q ss_pred cCCcCcccCC---ccccCCCCCCEEeCCCCcccccCCc
Q 040184 526 SHNNLTGVIP---VTFSNLNQVESLDISYNNLNGKIPP 560 (699)
Q Consensus 526 s~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~ 560 (699)
++|.+++..+ ..+..+++|++|++++|.+. ..|.
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999997766 58899999999999999988 4443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=9.2e-15 Score=134.98 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=47.6
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 574 (699)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 44444444444443334445555555556666655555555555555556666666665554444444555556666666
Q ss_pred cCcCcccCC
Q 040184 575 HNNLSGKIP 583 (699)
Q Consensus 575 ~N~l~~~~~ 583 (699)
+|++.+.+|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 665555443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=7.9e-15 Score=135.43 Aligned_cols=111 Identities=22% Similarity=0.255 Sum_probs=103.2
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV 573 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 573 (699)
++++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 58999999999999877778999999999999999999888888999999999999999999877778899999999999
Q ss_pred ccCcCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184 574 AHNNLSGKIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 574 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
++|++++..+..+..+++++.+++++||+.|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999998877777788999999999999999
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3e-15 Score=133.94 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=90.9
Q ss_pred CCCCEEEcccCcCC-CCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccccccCCCCcc
Q 040184 393 TYLRYLILANNNLE-GEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRSTYSAGSSTM 471 (699)
Q Consensus 393 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (699)
++|+.|++++|+++ +.+|..+..+++|+.|++++|.+++. ..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--------------------------------- 61 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP--------------------------------- 61 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------------------------
Confidence 45666666666665 45566666677777777777766543 1121
Q ss_pred cccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCccc-CCccccCCCCCCEEeCC
Q 040184 472 EKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGV-IPVTFSNLNQVESLDIS 550 (699)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls 550 (699)
.+++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|+++
T Consensus 62 --------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 62 --------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp --------------------CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred --------------------cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 234677777777777766777777788888888888888864 34678888888888888
Q ss_pred CCcccccCC---cccccCCCCCeeeccc
Q 040184 551 YNNLNGKIP---PQLVELNALAFFSVAH 575 (699)
Q Consensus 551 ~N~l~~~~p---~~l~~l~~L~~L~l~~ 575 (699)
+|++++..+ ..+..+++|+.|++++
T Consensus 122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 122 NCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888886655 4778888888888763
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=4.6e-16 Score=175.66 Aligned_cols=130 Identities=22% Similarity=0.239 Sum_probs=51.9
Q ss_pred CCCcEEeccCCcccccCCccccCCCCCcEEEcccccCcc---------cCCCCC-CCCCccEEEccCccccccCCccccc
Q 040184 297 SSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSENNISG---------SLPSCS-SHSSITQVHLSKNMLYGPLRYGTFF 366 (699)
Q Consensus 297 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~---------~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~ 366 (699)
+.++.|++.+|.+... +.. .++.++++.+.+.+ ..+..+ .+..|+.|++++|.+. .++.. +.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISAN-IF 244 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGG-GG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChh-hc
Confidence 4577788877777642 322 23444444444432 112222 4555666666666654 33333 33
Q ss_pred CCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCcc
Q 040184 367 NRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCL 437 (699)
Q Consensus 367 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 437 (699)
.+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.++ .+|..+
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence 5566666666666665 45555566666666666666665 44555666666666666666654 344333
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=6e-15 Score=131.95 Aligned_cols=129 Identities=22% Similarity=0.273 Sum_probs=104.8
Q ss_pred CCCccEEECCCCCCC-CCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccCCC
Q 040184 368 RSSIVTLDLSYNSFS-GYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNG 446 (699)
Q Consensus 368 ~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~ 446 (699)
.++++.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 467888888888887 56677778888899999999988855 67888899999999999987655544332
Q ss_pred CCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCcc-CCccccccCccCeEEc
Q 040184 447 DNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGE-IPPQISKLTRIRALNL 525 (699)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L 525 (699)
+++|+.|++++|.+++. .+..+..+++|++|++
T Consensus 87 ----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 87 ----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 35889999999999864 3477899999999999
Q ss_pred cCCcCcccCC---ccccCCCCCCEEeCCC
Q 040184 526 SHNNLTGVIP---VTFSNLNQVESLDISY 551 (699)
Q Consensus 526 s~N~l~~~~~---~~~~~l~~L~~L~Ls~ 551 (699)
++|++++..+ ..+..+++|+.||+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999997766 5789999999999874
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=3.7e-14 Score=129.58 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=101.8
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 574 (699)
..+.+++++|.++. +|..+ .++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45789999999984 66655 3899999999999999989999999999999999999998777788999999999999
Q ss_pred cCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCC-CCCCCCC
Q 040184 575 HNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCD-VAAVPEA 619 (699)
Q Consensus 575 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~-~~~~~~~ 619 (699)
+|++++..+..+..+++|+.+++++||+.| +|. ..|...|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-----~c~~l~~l~~~ 127 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC-----ACSDILYLSRW 127 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT-----TBGGGHHHHHH
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC-----CchhHHHHHHH
Confidence 999998888888889999999999999999 674 4444434
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=1.5e-12 Score=136.80 Aligned_cols=323 Identities=11% Similarity=0.107 Sum_probs=203.4
Q ss_pred CCCcccccCCC-CCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccc-cccccccCCCCCccccEEEccCCcCcccc
Q 040184 17 NISSSPLIHLT-SIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIF-VESESSHSMTPKFQLESVALSGSGIHATF 94 (699)
Q Consensus 17 ~i~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~~~~~L~~L~ls~~~i~~~~ 94 (699)
.|.+.+|.++. .|+.+.+..+ ++ .|+..+|.++++|+.+.+..+.-. .......+|..|.+|+.+.+..+ ++.+.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 45556788774 5899998865 44 677788889999999888776421 12223445566777887777653 55566
Q ss_pred chhcCCCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCchhhhhc
Q 040184 95 PKFLYNQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGVY 174 (699)
Q Consensus 95 ~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~ 174 (699)
..+|..+.+|+.+.+..+. . .+....|..+..|+.+.+..+ +......+|.. ..|+.+.+..+-. .+....+..
T Consensus 130 ~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~ 203 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSE 203 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTT
T ss_pred hhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhh
Confidence 6788888888888886543 2 455666788888888888654 44455555653 5688887765432 334445555
Q ss_pred CCCCcEEeCcCCcccccCCc-------------cccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccC
Q 040184 175 FPRLVYLNLSRNDFNGSIPS-------------SIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQL 241 (699)
Q Consensus 175 ~~~L~~L~L~~n~i~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 241 (699)
+..++............... .+.....+..+.+.. .++ .+....|.++..|+.+.+..+.. ...
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~-~I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVV-SIG 280 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCC-EEC
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEecccccc-eec
Confidence 66666666544432211100 111223344444433 233 45566677788888888865533 355
Q ss_pred cccccCCCCCcEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCC
Q 040184 242 FSKKNYLRKLVSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLN 321 (699)
Q Consensus 242 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 321 (699)
...|.++.+|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+++
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 5677788888888886 3455566678888888888888754 55556677888888888888654 5556667788888
Q ss_pred CCcEEEcccccCcccCCCCCCCCCccEEEccCccc
Q 040184 322 YLQILDLSENNISGSLPSCSSHSSITQVHLSKNML 356 (699)
Q Consensus 322 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~~ 356 (699)
+|+.+++.++.... .....+.+|+.+.+..+.+
T Consensus 358 ~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 88888888775432 2344667777777665543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=8.8e-14 Score=127.50 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=94.7
Q ss_pred cEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecccC
Q 040184 497 YGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAHN 576 (699)
Q Consensus 497 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 576 (699)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999997 5666554 89999999999999998999999999999999999999776677889999999999999
Q ss_pred cCcccCCCCCcCCCCCCCCccCCCCCCC
Q 040184 577 NLSGKIPEWTAQFTTFKEDSYEGNPLLC 604 (699)
Q Consensus 577 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C 604 (699)
++++..+..+..+++++.+++++||+.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9998877778889999999999999999
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=7e-14 Score=128.82 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=55.1
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCc--cccCCCCCCEEeCCCCcccccCCc----ccccCCCC
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPV--TFSNLNQVESLDISYNNLNGKIPP----QLVELNAL 568 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L 568 (699)
+|+.|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|+.|++++|.++ .+|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 45555555555554444445677777777777777763 333 6677777777777777777 3444 36777778
Q ss_pred CeeecccCcCcc
Q 040184 569 AFFSVAHNNLSG 580 (699)
Q Consensus 569 ~~L~l~~N~l~~ 580 (699)
+.|++++|....
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 888887776643
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1e-13 Score=127.74 Aligned_cols=134 Identities=19% Similarity=0.158 Sum_probs=109.4
Q ss_pred ccCCCCccEEECCCCCCCCCcChhhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCCccC
Q 040184 365 FFNRSSIVTLDLSYNSFSGYIPYWIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHN 444 (699)
Q Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~ 444 (699)
+..+++|+.|++++|.++.. +......++|++|++++|++++. ..+..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 66788999999999999854 54334445999999999999865 57889999999999999998655443333
Q ss_pred CCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCc--cccccCccCe
Q 040184 445 NGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPP--QISKLTRIRA 522 (699)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~ 522 (699)
+++|+.|++++|.++. +|. .+..+++|+.
T Consensus 87 ------------------------------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 87 ------------------------------------------------LPDLTELILTNNSLVE-LGDLDPLASLKSLTY 117 (176)
T ss_dssp ------------------------------------------------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCCE
T ss_pred ------------------------------------------------CCCCCEEECCCCcCCc-chhhHhhhcCCCCCE
Confidence 4589999999999974 555 7899999999
Q ss_pred EEccCCcCcccCCc----cccCCCCCCEEeCCCCcccc
Q 040184 523 LNLSHNNLTGVIPV----TFSNLNQVESLDISYNNLNG 556 (699)
Q Consensus 523 L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~ 556 (699)
|++++|.++.. |. .+..+++|+.||+++|.+..
T Consensus 118 L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 118 LCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999854 54 48899999999999998863
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=2.7e-12 Score=134.71 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=40.1
Q ss_pred cccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeecc
Q 040184 495 KMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVA 574 (699)
Q Consensus 495 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 574 (699)
+|+.+++..+ ++.....+|.++++|+++.+..+ ++.+...+|.++++|+.+++.++.... ..+....+|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 3444444322 33334456777777777777544 554555677777777777777765432 345556667666666
Q ss_pred cCcC
Q 040184 575 HNNL 578 (699)
Q Consensus 575 ~N~l 578 (699)
.|.+
T Consensus 387 ~~~~ 390 (394)
T 4gt6_A 387 PGSI 390 (394)
T ss_dssp ----
T ss_pred CCCE
Confidence 5543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.1e-13 Score=123.47 Aligned_cols=90 Identities=22% Similarity=0.246 Sum_probs=84.6
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV 573 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 573 (699)
++++.|+|++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 47899999999999988999999999999999999999888888999999999999999999877778999999999999
Q ss_pred ccCcCcccCC
Q 040184 574 AHNNLSGKIP 583 (699)
Q Consensus 574 ~~N~l~~~~~ 583 (699)
++|++.+.++
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999998776
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.7e-15 Score=142.67 Aligned_cols=152 Identities=24% Similarity=0.320 Sum_probs=97.0
Q ss_pred CCCccEEECCCCCCCCCcCh------hhhcCCCCCEEEcccCcCCCCCCcccCCCCCCCEEECcCCcccccCCCccccCC
Q 040184 368 RSSIVTLDLSYNSFSGYIPY------WIERLTYLRYLILANNNLEGEVPIQLCRLKQLRLIDLSNNNIFGQIPGCLDNTS 441 (699)
Q Consensus 368 ~~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~ 441 (699)
...++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-- 91 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-- 91 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH--
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc--
Confidence 34455555555555544443 77778888888888888775 44 6677777888888777775 33332221
Q ss_pred ccCCCCCCCCCcccccccccccccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccC
Q 040184 442 LHNNGDNDDSLVPAFNHNVRSTYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIR 521 (699)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 521 (699)
+++|+.|++++|++++ +| .+..+++|+
T Consensus 92 ---------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 92 ---------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp ---------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred ---------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 2367777777777775 33 467777777
Q ss_pred eEEccCCcCcccCC-ccccCCCCCCEEeCCCCcccccCCcc----------cccCCCCCeeecccCcCc
Q 040184 522 ALNLSHNNLTGVIP-VTFSNLNQVESLDISYNNLNGKIPPQ----------LVELNALAFFSVAHNNLS 579 (699)
Q Consensus 522 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~ 579 (699)
+|++++|++++..+ ..+..+++|++|++++|.+++..|.. +..+++|+.|+ +|+++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777777764332 45667777777777777776554432 56677777665 55554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=8e-13 Score=121.08 Aligned_cols=90 Identities=21% Similarity=0.260 Sum_probs=83.4
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeec
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSV 573 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 573 (699)
++|+.|++++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|++|+|++|+|++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 48899999999999988999999999999999999999888888899999999999999999776667999999999999
Q ss_pred ccCcCcccCC
Q 040184 574 AHNNLSGKIP 583 (699)
Q Consensus 574 ~~N~l~~~~~ 583 (699)
++|++.+.++
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999997665
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=2.4e-15 Score=141.65 Aligned_cols=155 Identities=22% Similarity=0.242 Sum_probs=126.9
Q ss_pred hhcCCCCCEEEcccCcCCCCCCc------ccCCCCCCCEEECcCCcccccCCCccccCCccCCCCCCCCCcccccccccc
Q 040184 389 IERLTYLRYLILANNNLEGEVPI------QLCRLKQLRLIDLSNNNIFGQIPGCLDNTSLHNNGDNDDSLVPAFNHNVRS 462 (699)
Q Consensus 389 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (699)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 55677888888998888877776 88899999999999999975 44 4433
Q ss_pred cccCCCCcccccceeEEeecceeeeeCCCCCCcccEEEccCCccCccCCccccccCccCeEEccCCcCcccCCccccCCC
Q 040184 463 TYSAGSSTMEKEESIMFTTKEISFSYKGKPLNKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN 542 (699)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 542 (699)
+++|+.|++++|.++ .+|..+..+++|++|++++|++++. | .+..++
T Consensus 69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence 458999999999999 5788888899999999999999974 4 688999
Q ss_pred CCCEEeCCCCcccccCC-cccccCCCCCeeecccCcCcccCCCC----------CcCCCCCCCCccCCCCCC
Q 040184 543 QVESLDISYNNLNGKIP-PQLVELNALAFFSVAHNNLSGKIPEW----------TAQFTTFKEDSYEGNPLL 603 (699)
Q Consensus 543 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~~~~~~Np~~ 603 (699)
+|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..++.++.++ +||..
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99999999999985433 47889999999999999999887763 44566666553 65553
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=2.8e-13 Score=139.85 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=89.8
Q ss_pred EEEccCC-ccCccCCccccccCccCeEEccC-CcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184 498 GVDLSCN-KLTGEIPPQISKLTRIRALNLSH-NNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH 575 (699)
Q Consensus 498 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 575 (699)
.++++++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4678877 787 4666 88888888888886 888888778888888888888888888888888888888888888888
Q ss_pred CcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 040184 576 NNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPE 618 (699)
Q Consensus 576 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~ 618 (699)
|+|++..+..+..+. |+.+.+.+|++.| +|+..|+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c-----~c~l~~~~~ 126 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC-----SCALRWLQR 126 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC-----CGGGHHHHH
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC-----CCccHHHHH
Confidence 888877776665554 8888888888888 566544433
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=1.7e-10 Score=120.40 Aligned_cols=300 Identities=12% Similarity=0.063 Sum_probs=195.0
Q ss_pred ccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCccccchhcCCCC
Q 040184 23 LIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHATFPKFLYNQH 102 (699)
Q Consensus 23 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~l~~~~ 102 (699)
+....+|+.+.+... ++ .|+..+|.++.+|+.+++..+ ++.. ...+|..+ +|+.+.+..+ +..+...+|..+
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~I--g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~- 113 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSI--GDGAFADT-KLQSYTGMER-VKKFGDYVFQGT- 113 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEE--CTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEe--chhhhcCC-CCceEECCce-eeEeccceeccC-
Confidence 556678888888754 44 577778888888888888754 3322 23334455 6777777643 555555666655
Q ss_pred CCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCcccCCCCCCCCCCCCEEEccCccCCccCc-----------hhh
Q 040184 103 DLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLSGPFRMPIQPHWHLDTLYVSKNFFQGNIP-----------LEI 171 (699)
Q Consensus 103 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-----------~~~ 171 (699)
+|+.+++..+-. .+....|.++ +++...+.. .+.......+..+..++.+.+..+....... ...
T Consensus 114 ~L~~i~lp~~~~--~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 114 DLDDFEFPGATT--EIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CCSEEECCTTCC--EECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred CcccccCCCccc--cccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 788888876532 3444445554 566666644 3445556677788888887776543221000 001
Q ss_pred hhcCCCCcEEeCcCCcccccCCccccCCCCCCEEEccCCcCCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCC
Q 040184 172 GVYFPRLVYLNLSRNDFNGSIPSSIGDMNSLEALDLSHNQLTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKL 251 (699)
Q Consensus 172 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 251 (699)
+.....+..+.+.... .......+..+..|+.+.+..+ +. .+....+.++..|+.+.+..+ +.......|.++.+|
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 1113345555554433 2245566777788888888654 44 666666777888888888765 555556677888888
Q ss_pred cEEEccCCcCCccCCccCcCCCCCceEECCCCcCcCcCchhhhccCCCcEEeccCCcccccCCccccCCCCCcEEEcccc
Q 040184 252 VSLHLDANYFTGEIPKSLSNCSHLEGLYMSDNNLYGNIPAWLGNLSSLYDIMMASNHLQGPIPLEFCQLNYLQILDLSEN 331 (699)
Q Consensus 252 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 331 (699)
+.+.+..+ +......+|.++++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+..+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88888654 55456677888888888888887777666778888888888888754 55566677888888888888654
Q ss_pred cCcccCCCCC
Q 040184 332 NISGSLPSCS 341 (699)
Q Consensus 332 ~i~~~~~~~~ 341 (699)
++.....++
T Consensus 344 -v~~I~~~aF 352 (379)
T 4h09_A 344 -ITLIESGAF 352 (379)
T ss_dssp -CCEECTTTT
T ss_pred -cCEEchhHh
Confidence 544444444
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=3.2e-13 Score=139.62 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=29.2
Q ss_pred cccEEEccCCcCccccchhcC-----CCCCCCEEEcccCccccccchhhhhCCCCCCEEEcCCCcCc
Q 040184 79 QLESVALSGSGIHATFPKFLY-----NQHDLEYVDFSDSNLKGEFLNWLLENNTNLNTLVLRNNSLS 140 (699)
Q Consensus 79 ~L~~L~ls~~~i~~~~~~~l~-----~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 140 (699)
.|++|++++|.++......+. ..++|+.|++++|.+++.....+...+++|++|+|++|.+.
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 455555555555443222221 12455555555555554333333333445555555555544
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=4.4e-13 Score=138.65 Aligned_cols=139 Identities=20% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCCCEEEccCccCCccCchhhhhcCCCCcEEeCcCCcccccCCccc-----cCCCCCCEEEccCCcCCCccchHH---hh
Q 040184 151 WHLDTLYVSKNFFQGNIPLEIGVYFPRLVYLNLSRNDFNGSIPSSI-----GDMNSLEALDLSHNQLTGEIPEHL---AM 222 (699)
Q Consensus 151 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~---~~ 222 (699)
++|++|++++|.+++.....+...+++|++|+|++|.++......+ ...++|++|++++|.++......+ ..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3555555555555433333333334566666666666654333332 234566666666666652111111 12
Q ss_pred cCCCCcEEEccCCcCCcc----CcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcCcC
Q 040184 223 SCFNLEFLVLSENSLLGQ----LFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYGNI 289 (699)
Q Consensus 223 ~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 289 (699)
.+++|++|+|++|.+... ++..+...++|++|++++|.++.. ++.++...++|++|++++|.+++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 355566666666655432 133344455566666666665532 1223334455666666666655433
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=6.5e-12 Score=129.53 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=89.8
Q ss_pred CCcccEEEccC-CccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCee
Q 040184 493 LNKMYGVDLSC-NKLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFF 571 (699)
Q Consensus 493 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 571 (699)
+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++++|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34899999996 999988889999999999999999999999999999999999999999999977666776666 9999
Q ss_pred ecccCcCcccCCC-CCcCCCCCCCCccCCCCCCCCC
Q 040184 572 SVAHNNLSGKIPE-WTAQFTTFKEDSYEGNPLLCGK 606 (699)
Q Consensus 572 ~l~~N~l~~~~~~-~~~~~~~l~~~~~~~Np~~C~~ 606 (699)
++++|++.+.++- ++..+.......+..+.+.|..
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence 9999999876541 1111111223334455666643
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=2.1e-09 Score=112.14 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=42.1
Q ss_pred cCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcccccCCcccccCCCCCeeeccc
Q 040184 509 EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNLNGKIPPQLVELNALAFFSVAH 575 (699)
Q Consensus 509 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 575 (699)
.....|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...+|..+++|+.+.+..
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 33445666667777777666666666666777777777777544 5445556667777777666643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=2.2e-09 Score=109.75 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=114.8
Q ss_pred cccCCCCCCEEeCCCCccc---------ccCCcccccCCCCCcEEEcccCccccccccccCCCCCccccEEEccCCcCcc
Q 040184 22 PLIHLTSIERLFLSYNQFQ---------IPFSLEPFFNNSKLKVFSGECNEIFVESESSHSMTPKFQLESVALSGSGIHA 92 (699)
Q Consensus 22 ~~~~l~~L~~L~Ls~n~~~---------~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~ 92 (699)
+...+++|+.|.+.++... +.+. ..+..+|+|+.|++++|.-... .. ...++|++|++..|.+..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l--~~---~~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSI--GK---KPRPNLKSLEIISGGLPD 207 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBC--CS---CBCTTCSEEEEECSBCCH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCcee--cc---ccCCCCcEEEEecCCCCh
Confidence 3556788999988765331 0111 3346778999999987731111 11 124589999999888765
Q ss_pred ccchhcC--CCCCCCEEEcccC--ccccc-----cchhhh-hCCCCCCEEEcCCCcCcccCCCCC---CCCCCCCEEEcc
Q 040184 93 TFPKFLY--NQHDLEYVDFSDS--NLKGE-----FLNWLL-ENNTNLNTLVLRNNSLSGPFRMPI---QPHWHLDTLYVS 159 (699)
Q Consensus 93 ~~~~~l~--~~~~L~~L~ls~n--~~~~~-----~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~l~ 159 (699)
.....+. .+++|+.|+|+.+ ...+. +...+. ..+++|++|+|.+|.+.+..+..+ ..+++|++|+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 5444444 7899999998632 11111 111111 247899999999888764322112 246789999999
Q ss_pred CccCCccCchhhh---hcCCCCcEEeCcCCcccccCCccccC-CCCCCEEEccCCc
Q 040184 160 KNFFQGNIPLEIG---VYFPRLVYLNLSRNDFNGSIPSSIGD-MNSLEALDLSHNQ 211 (699)
Q Consensus 160 ~n~i~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~ 211 (699)
.|.+.+..+..+. ..+++|+.|++++|.++......+.. + ...++++.++
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9988754333332 23689999999999887654444443 2 4568888876
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=6.6e-09 Score=106.27 Aligned_cols=203 Identities=16% Similarity=0.167 Sum_probs=104.1
Q ss_pred cccEEEccCCcCcc-c-------cchhcCCCCCCCEEEcccCccc---------cccchhhhhCCCCCCEEEcCCCcCcc
Q 040184 79 QLESVALSGSGIHA-T-------FPKFLYNQHDLEYVDFSDSNLK---------GEFLNWLLENNTNLNTLVLRNNSLSG 141 (699)
Q Consensus 79 ~L~~L~ls~~~i~~-~-------~~~~l~~~~~L~~L~ls~n~~~---------~~~~~~~~~~l~~L~~L~Ls~n~i~~ 141 (699)
+++.|.+..+...+ . +..+...+++|+.|.+...... +.+. .++..+++|+.|++++|.-..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence 45666666544331 1 1223445678888887654321 1233 345778899999998773111
Q ss_pred cCCCCCCCCCCCCEEEccCccCCccCchhhhh-cCCCCcEEeCcC--Cccccc-----CCccc--cCCCCCCEEEccCCc
Q 040184 142 PFRMPIQPHWHLDTLYVSKNFFQGNIPLEIGV-YFPRLVYLNLSR--NDFNGS-----IPSSI--GDMNSLEALDLSHNQ 211 (699)
Q Consensus 142 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~~~~L~~L~L~~--n~i~~~-----~~~~~--~~l~~L~~L~L~~n~ 211 (699)
.+. + .+++|+.|++..+.+.......+.. .+|+|++|+|+. +...+. +...+ ..+++|++|++++|.
T Consensus 187 -l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 222 3 3778888888887776433333332 467888888753 111110 11112 235666777776666
Q ss_pred CCCccchHHhhcCCCCcEEEccCCcCCccCcccccCCCCCcEEEccCCcCCcc----CCccCcCCCCCceEECCCCcCcC
Q 040184 212 LTGEIPEHLAMSCFNLEFLVLSENSLLGQLFSKKNYLRKLVSLHLDANYFTGE----IPKSLSNCSHLEGLYMSDNNLYG 287 (699)
Q Consensus 212 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~ 287 (699)
+.+..+..++. ...+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++
T Consensus 264 i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 264 EQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp THHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 65333333321 01244555555555555432 12222345666666666666654
Q ss_pred cCchhhhccCCCcEEeccCCc
Q 040184 288 NIPAWLGNLSSLYDIMMASNH 308 (699)
Q Consensus 288 ~~~~~~~~l~~L~~L~l~~n~ 308 (699)
.....+...- ...++++.++
T Consensus 322 ~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHHHc-CCEEEecCCc
Confidence 3333333211 2445665554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=4.2e-08 Score=90.43 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=28.2
Q ss_pred ChhhhcCCCCCEEEcccC-cCCCC----CCcccCCCCCCCEEECcCCccc
Q 040184 386 PYWIERLTYLRYLILANN-NLEGE----VPIQLCRLKQLRLIDLSNNNIF 430 (699)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~ls~n~i~ 430 (699)
...+...++|++|+|++| .+... +...+...++|++|++++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 344556677777777777 66532 2334555667777777777764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=4.7e-07 Score=83.33 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=21.6
Q ss_pred CCCcEEeC--cCCccccc----CCccccCCCCCCEEEccCCcCC
Q 040184 176 PRLVYLNL--SRNDFNGS----IPSSIGDMNSLEALDLSHNQLT 213 (699)
Q Consensus 176 ~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~ 213 (699)
+.|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 45666666 55655532 2233444566777777777654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=8e-07 Score=85.91 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=27.0
Q ss_pred CcccEEEccCCccCc--cCCccccccCccCeEEccCCcCcccCCccccCCC--CCCEEeCCCCcccc
Q 040184 494 NKMYGVDLSCNKLTG--EIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLN--QVESLDISYNNLNG 556 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~ 556 (699)
++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 445555555555544 2223344445555555555555433 1222222 44455555554443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=2.2e-07 Score=89.83 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=63.1
Q ss_pred EEccCCccC---ccCCccccccCccCeEEccCCcCccc--CCccccCCCCCCEEeCCCCcccccCCcccccCC--CCCee
Q 040184 499 VDLSCNKLT---GEIPPQISKLTRIRALNLSHNNLTGV--IPVTFSNLNQVESLDISYNNLNGKIPPQLVELN--ALAFF 571 (699)
Q Consensus 499 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 571 (699)
++++.|... ...+.....+++|++|+|++|+++++ +|..+..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 666777433 12222235689999999999999974 456777899999999999999865 3344444 89999
Q ss_pred ecccCcCcccCC
Q 040184 572 SVAHNNLSGKIP 583 (699)
Q Consensus 572 ~l~~N~l~~~~~ 583 (699)
++++|++++..|
T Consensus 226 ~L~~Npl~~~~~ 237 (267)
T 3rw6_A 226 WLDGNSLCDTFR 237 (267)
T ss_dssp ECTTSTTGGGCS
T ss_pred EccCCcCccccC
Confidence 999999998666
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=1.8e-06 Score=77.11 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=64.9
Q ss_pred ccccEEEccCCcCccccchhcCCCCCCCEEEcccCc-cccccchhhhhCC----CCCCEEEcCCCc-CcccCCCCCCCCC
Q 040184 78 FQLESVALSGSGIHATFPKFLYNQHDLEYVDFSDSN-LKGEFLNWLLENN----TNLNTLVLRNNS-LSGPFRMPIQPHW 151 (699)
Q Consensus 78 ~~L~~L~ls~~~i~~~~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~~~~~~~~l~ 151 (699)
.+|++||+++|.++...-..+..|++|+.|+|++|. +++.....+ ..+ ++|++|+|++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 379999999998887777778899999999999985 876666555 443 479999998874 7655444566778
Q ss_pred CCCEEEccCcc
Q 040184 152 HLDTLYVSKNF 162 (699)
Q Consensus 152 ~L~~L~l~~n~ 162 (699)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1e-06 Score=78.81 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=68.7
Q ss_pred CcccEEEccCCccCccCCccccccCccCeEEccCCc-CcccCCccccCC----CCCCEEeCCCCc-ccccCCcccccCCC
Q 040184 494 NKMYGVDLSCNKLTGEIPPQISKLTRIRALNLSHNN-LTGVIPVTFSNL----NQVESLDISYNN-LNGKIPPQLVELNA 567 (699)
Q Consensus 494 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 567 (699)
..|+.||+++|.+++.--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. |+...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 379999999999987766778899999999999995 665433445554 479999999985 88665567888999
Q ss_pred CCeeecccCc
Q 040184 568 LAFFSVAHNN 577 (699)
Q Consensus 568 L~~L~l~~N~ 577 (699)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.91 E-value=1.8e-06 Score=73.75 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=28.6
Q ss_pred CCCeeecccCcCcccCCCCCcCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 040184 567 ALAFFSVAHNNLSGKIPEWTAQFTTFKEDSYEGNPLLCGKPLPDCDVAAVPEAS 620 (699)
Q Consensus 567 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c~~~~~~~~~ 620 (699)
+|+.|+|++|+|+...+..|..++.++.+.+.+|||.| +|+..|+..|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C-----dC~l~~l~~wl 80 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC-----DCRLVPLRAWL 80 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC-----SGGGHHHHHHH
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec-----cCccHHHHHHH
Confidence 34555555555554444444445555556667777777 77766665554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00056 Score=58.19 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=26.2
Q ss_pred EEEccCCccC-ccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCCcc
Q 040184 498 GVDLSCNKLT-GEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYNNL 554 (699)
Q Consensus 498 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 554 (699)
.++.++++++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 12332221 2455555555555544444455555555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00044 Score=62.97 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred CCCCCEEEcCCCcCcccCCCC----CCCCCCCCEEEccCccCCccCchhhhhc---CCCCcEEeCcCC---cccc----c
Q 040184 126 NTNLNTLVLRNNSLSGPFRMP----IQPHWHLDTLYVSKNFFQGNIPLEIGVY---FPRLVYLNLSRN---DFNG----S 191 (699)
Q Consensus 126 l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~~---~~~L~~L~L~~n---~i~~----~ 191 (699)
.+.|+.|+|++|.+.+..... +..-+.|++|+|++|.|.+.--..+... -+.|++|+|+++ .+.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 344555555555444322222 2233445555555555542222222111 234666666543 2221 1
Q ss_pred CCccccCCCCCCEEEccCCcC
Q 040184 192 IPSSIGDMNSLEALDLSHNQL 212 (699)
Q Consensus 192 ~~~~~~~l~~L~~L~L~~n~l 212 (699)
+...+..-+.|+.|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 233445556677777766544
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.94 E-value=0.0005 Score=62.60 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=54.1
Q ss_pred hCCCCCCEEEcCCC-cCccc----CCCCCCCCCCCCEEEccCccCCccCchh---hhhcCCCCcEEeCcCCccccc----
Q 040184 124 ENNTNLNTLVLRNN-SLSGP----FRMPIQPHWHLDTLYVSKNFFQGNIPLE---IGVYFPRLVYLNLSRNDFNGS---- 191 (699)
Q Consensus 124 ~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~---~~~~~~~L~~L~L~~n~i~~~---- 191 (699)
.+-+.|++|+|++| .+... +...+..-+.|+.|+|++|++.+.-... ..+.-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34445555555543 44321 2223444556677777777665321111 111234677777777766542
Q ss_pred CCccccCCCCCCEEEccCCc---CCCc----cchHHhhcCCCCcEEEccCCc
Q 040184 192 IPSSIGDMNSLEALDLSHNQ---LTGE----IPEHLAMSCFNLEFLVLSENS 236 (699)
Q Consensus 192 ~~~~~~~l~~L~~L~L~~n~---l~~~----~~~~~~~~l~~L~~L~L~~n~ 236 (699)
+..++..-+.|++|+|++|. +... +.+.+ ..-+.|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCC
Confidence 23344455567777776542 2211 11111 234566667666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.84 E-value=1.7 Score=34.31 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=39.3
Q ss_pred CCCCCCCCCcccccCCCCCCEEeCCCCcccccCCcccccCCCCCcEEEcccC
Q 040184 11 LNQLTGNISSSPLIHLTSIERLFLSYNQFQIPFSLEPFFNNSKLKVFSGECN 62 (699)
Q Consensus 11 ~n~l~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n 62 (699)
+..++ .|...+|.+|++|+.+.|..+- + .|...+|.+|.+|+.+.+...
T Consensus 5 g~~vt-~I~~~aF~~c~~L~~i~iP~~v-~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVV-GMDKSLFAGNTVIREITVQPNI-G-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCC-SSCSCTTTTCTTCCCEEECTTS-S-CCCTTSSTTCTTCCCEEECCS
T ss_pred CCccC-EecHHHhcCCCCCcEEEcCCch-h-eEcHHHHhccCCccEEEEcCC
Confidence 34555 7877899999999999998763 3 577788999999999888765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.86 E-value=26 Score=27.35 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=29.9
Q ss_pred ccCccCCccccccCccCeEEccCCcCcccCCccccCCCCCCEEeCCCC
Q 040184 505 KLTGEIPPQISKLTRIRALNLSHNNLTGVIPVTFSNLNQVESLDISYN 552 (699)
Q Consensus 505 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 552 (699)
.++.+....|.++++|+.+.|..+ ++.+-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444455566777777777777765 33355566777777777766553
Done!