BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040185
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 186/373 (49%), Gaps = 33/373 (8%)
Query: 102 ALDELDVGSNELSGRIPNSLGFRFP-GTVDLRSNRYEGPLP-LWSFNVTKLYLNNNLFSG 159
AL LD+ N+LSG ++ +++ SN++ GP+P L ++ L L N F+G
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 283
Query: 160 PIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIP-D 218
IP LT LD+S N G+VP G+ L +L +S+NN+ GE+P D
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF------SGELPMD 337
Query: 219 SIGSLLSVRFLIFCNNHISGEVPPSLKNCSM-MESLDLGDNQLSGNI-PAWIGESMPSLS 276
++ + ++ L N SGE+P SL N S + +LDL N SG I P +L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 277 ILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-------------- 322
L L++N F G IPP L S L L LS N LSG IPS +G+ S+
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 323 --TEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE 380
E ++ TL + ++D N+L+ E+P L+ +L ++LS N L G+IP IG+LE
Sbjct: 458 IPQELMYVKTLETL-ILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIY-AGN- 438
L L LS N SG+IP + + L+L+ N +G IP QS K + + AG
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 439 -LALCGDPLPKRC 450
+ + D + K C
Sbjct: 575 YVYIKNDGMKKEC 587
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 183/450 (40%), Gaps = 134/450 (29%)
Query: 102 ALDELDVGSNELSGRIPNSLGFRFPG--TVDLRSNRYEGP-LPLWSFN----VTKLYLNN 154
L LD+ NE SG +P SL T+DL SN + GP LP N + +LYL N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 155 NLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLL----------------- 197
N F+G IP L L +SFN L+G++P S+G+L +L
Sbjct: 404 NGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 198 -------TLVISNNNY------------------MSNNSLPGEIPDSIGSLLSVRFLIFC 232
TL++ N+ +SNN L GEIP IG L ++ L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 233 NNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWI------------------------ 268
NN SG +P L +C + LDL N +G IPA +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 269 ------------------GESMPSLSI---LRLRSNYFNGAIPPELCKLSALHILDLSHN 307
E + LS + S + G P ++ LD+S+N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 308 NLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH 367
LSG+IP +G+ Y+F +++L N++S +P E+ L L L+LS N
Sbjct: 643 MLSGYIPKEIGSM---PYLF--------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 368 LVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQ 427
L G+IP + L L +DLS N L SG IP++ QF+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNL------------------------SGPIPEMGQFE 727
Query: 428 SLKDPSIYAGNLALCGDPLPKRC--SEIDG 455
+ P+ + N LCG PLP RC S DG
Sbjct: 728 TFP-PAKFLNNPGLCGYPLP-RCDPSNADG 755
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 233 NNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNY--FNGAI 289
N+HI+G V K + + SLDL N LSG + S L L + SN F G +
Sbjct: 86 NSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
Query: 290 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMP 349
L KL++L +LDLS N++SG + VG +V + + +S N +S +
Sbjct: 145 SGGL-KLNSLEVLDLSANSISG--ANVVG------WVLSDGCGELKHLAISGNKISGD-- 193
Query: 350 VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 409
V+++R ++L L++S N+ IP +G L+ LD+S NKLSG ++ + T + L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 410 NLSYNNLSGEIP----KVNQFQSLKD 431
N+S N G IP K Q+ SL +
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAE 278
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 36/226 (15%)
Query: 67 KFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFP 126
+ P W+ L L L+N S IP +L LD+ +N +G IP ++ F+
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM-FKQS 562
Query: 127 GTVD---LRSNRY------------EGPLPLWSFNVTK------------LYLNNNLFSG 159
G + + RY G L F + + + ++ G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 160 PIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDS 219
F + LD+S+N L+G +PK IG++ L L + +N+ + G IPD
Sbjct: 623 HTSPTFDNNGSMMF-LDMSYNMLSGYIPKEIGSMPYLFILNLGHND------ISGSIPDE 675
Query: 220 IGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIP 265
+G L + L +N + G +P ++ +M+ +DL +N LSG IP
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 186/373 (49%), Gaps = 33/373 (8%)
Query: 102 ALDELDVGSNELSGRIPNSLGFRFP-GTVDLRSNRYEGPLP-LWSFNVTKLYLNNNLFSG 159
AL LD+ N+LSG ++ +++ SN++ GP+P L ++ L L N F+G
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 280
Query: 160 PIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIP-D 218
IP LT LD+S N G+VP G+ L +L +S+NN+ GE+P D
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF------SGELPMD 334
Query: 219 SIGSLLSVRFLIFCNNHISGEVPPSLKNCSM-MESLDLGDNQLSGNI-PAWIGESMPSLS 276
++ + ++ L N SGE+P SL N S + +LDL N SG I P +L
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 277 ILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-------------- 322
L L++N F G IPP L S L L LS N LSG IPS +G+ S+
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 323 --TEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE 380
E ++ TL + ++D N+L+ E+P L+ +L ++LS N L G+IP IG+LE
Sbjct: 455 IPQELMYVKTLETL-ILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIY-AGN- 438
L L LS N SG+IP + + L+L+ N +G IP QS K + + AG
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 439 -LALCGDPLPKRC 450
+ + D + K C
Sbjct: 572 YVYIKNDGMKKEC 584
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 183/450 (40%), Gaps = 134/450 (29%)
Query: 102 ALDELDVGSNELSGRIPNSLGFRFPG--TVDLRSNRYEGP-LPLWSFN----VTKLYLNN 154
L LD+ NE SG +P SL T+DL SN + GP LP N + +LYL N
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 155 NLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLL----------------- 197
N F+G IP L L +SFN L+G++P S+G+L +L
Sbjct: 401 NGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 198 -------TLVISNNNY------------------MSNNSLPGEIPDSIGSLLSVRFLIFC 232
TL++ N+ +SNN L GEIP IG L ++ L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 233 NNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWI------------------------ 268
NN SG +P L +C + LDL N +G IPA +
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 269 ------------------GESMPSLSI---LRLRSNYFNGAIPPELCKLSALHILDLSHN 307
E + LS + S + G P ++ LD+S+N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 308 NLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH 367
LSG+IP +G+ Y+F +++L N++S +P E+ L L L+LS N
Sbjct: 640 MLSGYIPKEIGSM---PYLF--------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 368 LVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQ 427
L G+IP + L L +DLS N L SG IP++ QF+
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNL------------------------SGPIPEMGQFE 724
Query: 428 SLKDPSIYAGNLALCGDPLPKRC--SEIDG 455
+ P+ + N LCG PLP RC S DG
Sbjct: 725 TFP-PAKFLNNPGLCGYPLP-RCDPSNADG 752
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 233 NNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNY--FNGAI 289
N+HI+G V K + + SLDL N LSG + S L L + SN F G +
Sbjct: 83 NSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 141
Query: 290 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMP 349
L KL++L +LDLS N++SG + VG +V + + +S N +S +
Sbjct: 142 SGGL-KLNSLEVLDLSANSISG--ANVVG------WVLSDGCGELKHLAISGNKISGD-- 190
Query: 350 VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 409
V+++R ++L L++S N+ IP +G L+ LD+S NKLSG ++ + T + L
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 410 NLSYNNLSGEIP----KVNQFQSLKD 431
N+S N G IP K Q+ SL +
Sbjct: 250 NISSNQFVGPIPPLPLKSLQYLSLAE 275
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 36/226 (15%)
Query: 67 KFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFP 126
+ P W+ L L L+N S IP +L LD+ +N +G IP ++ F+
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM-FKQS 559
Query: 127 GTVD---LRSNRY------------EGPLPLWSFNVTK------------LYLNNNLFSG 159
G + + RY G L F + + + ++ G
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 160 PIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDS 219
F + LD+S+N L+G +PK IG++ L L + +N+ + G IPD
Sbjct: 620 HTSPTFDNNGSMMF-LDMSYNMLSGYIPKEIGSMPYLFILNLGHND------ISGSIPDE 672
Query: 220 IGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIP 265
+G L + L +N + G +P ++ +M+ +DL +N LSG IP
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 128/263 (48%), Gaps = 21/263 (7%)
Query: 186 VPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLK 245
+P S+ NL L L I N+L G IP +I L + +L + ++SG +P L
Sbjct: 68 IPSSLANLPYLNFLYIG-----GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 246 NCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHI-LDL 304
+ +LD N LSG +P I S+P+L + N +GAIP S L + +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 305 SHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLS 364
S N L+G IP N + + +DLS N L + V + ++L+
Sbjct: 182 SRNRLTGKIPPTFANLN------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 365 QNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVN 424
+N L + ++G + L LDL N++ G++P + L F++ LN+S+NNL GEIP+
Sbjct: 230 KNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288
Query: 425 QFQSLKDPSIYAGNLALCGDPLP 447
Q D S YA N LCG PLP
Sbjct: 289 NLQRF-DVSAYANNKCLCGSPLP 310
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 78 LTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYE 137
L + + RIS IP+ + + + N L+G+IP + VDL N E
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 138 GPLPL--------------------------WSFNVTKLYLNNNLFSGPIPRDFGQKIPF 171
G + S N+ L L NN G +P+ Q + F
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKF 269
Query: 172 LTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPG 214
L L++SFN+L G +P+ GNLQ+ +NN + + LP
Sbjct: 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 247 CSM-MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305
C M +ESL+L +++ S +I + + L L L + + G +P + L+ L L LS
Sbjct: 249 CEMSVESLNLQEHRFS-DISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLS 306
Query: 306 HNNLSGFIPSCVGNFSRTEYVF----YSTLYL----------VNLMDLSSNNL--SREMP 349
N+ NF +++ L+L + +DLS N++ S
Sbjct: 307 VNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 350 VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPS-MVSLTFMNH 408
++L L HL TLNLS N +G + LE LDL+ +L + P S +L F+
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 409 LNLSY 413
LNL+Y
Sbjct: 427 LNLTY 431
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 131/340 (38%), Gaps = 55/340 (16%)
Query: 75 QTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSN 134
+ + +L L R SD I + +Q L ELD+ + L G G + L N
Sbjct: 250 EMSVESLNLQEHRFSD-ISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVN 308
Query: 135 RYEGPLPLWSFN---VTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGS--VPKS 189
++ + + N +T LY+ N+ + +K+ L LD+S N + S
Sbjct: 309 HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQ 368
Query: 190 IGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSM 249
+ NL L TL +S+N + G + K C
Sbjct: 369 LKNLSHLQTLNLSHNEPL------------------------------GLQSQAFKECPQ 398
Query: 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNN- 308
+E LDL +L N P +++ L +L L + + + L L L L+L N+
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 309 ----------------LSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVEL 352
L I S G S + F+S L ++ +DLS N+L+ + L
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHS-LGKMSHVDLSHNSLTCDSIDSL 517
Query: 353 TRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 392
+ L + LNL+ N + P + L +++LS N L
Sbjct: 518 SHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 123/304 (40%), Gaps = 44/304 (14%)
Query: 130 DLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKS 189
D+ S +G L +V L L + FS F Q L +LD++ L G +P
Sbjct: 239 DISSAMLKG---LCEMSVESLNLQEHRFSDISSTTF-QCFTQLQELDLTATHLKG-LPSG 293
Query: 190 IGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPP------S 243
+ L L LV+S N++ D + + + F + +I G V
Sbjct: 294 MKGLNLLKKLVLSVNHF-----------DQLCQISAANFPSLTHLYIRGNVKKLHLGVGC 342
Query: 244 LKNCSMMESLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNYFNGAIPPELCKLSALHIL 302
L+ +++LDL N + + + +++ L L L N G + L +L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 303 DLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNL----MDLSSNNLSREMPVELTRLIHL 358
DL+ L P ++ + L ++NL +D S+ +L +PV L
Sbjct: 403 DLAFTRLHINAP-------QSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV-------L 448
Query: 359 GTLNLSQNHLVGKIPTQIGKLEW---LESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNN 415
LNL NH T+ L+ LE L LS L + SL M+H++LS+N+
Sbjct: 449 RHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNS 508
Query: 416 LSGE 419
L+ +
Sbjct: 509 LTCD 512
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 205
+VT+LYL+ N F+ +P++ LT +D+S N ++ +S N+ QLLTL++S N
Sbjct: 32 DVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 206 YMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQL 260
+P P + L S+R L N IS + + S + L +G N L
Sbjct: 90 L---RCIP---PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 13/200 (6%)
Query: 218 DSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSI 277
+S L + L NHI + + + +L+L DN+L+ IP + L
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKE 140
Query: 278 LRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLM 337
L LR+N ++ +L LDL +I G F + Y L + NL
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNL- 197
Query: 338 DLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIP 397
RE+P LT LI L L+LS NHL P L L+ L + ++++
Sbjct: 198 --------REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248
Query: 398 PSMVSLTFMNHLNLSYNNLS 417
+ +L + +NL++NNL+
Sbjct: 249 NAFDNLQSLVEINLAHNNLT 268
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 112/268 (41%), Gaps = 39/268 (14%)
Query: 129 VDLRSNRYEGPLPLWSFN----VTKLYLNNN--LFSGPIPR-DFGQKIPFLTDLDISFNS 181
++L SN+ + LP F+ +TKL L++N F G + DFG L LD+SFN
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG--TTSLKYLDLSFNG 89
Query: 182 LNGSVPKSIGNLQQL--LTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCN-NHISG 238
+ +G L+QL L SN MS S+ LS+R LI+ + +H
Sbjct: 90 VITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV----------FLSLRNLIYLDISHTHT 138
Query: 239 EVPPS--LKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKL 296
V + S +E L + N N I + +L+ L L P L
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 297 SALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRL- 355
S+L +L++SHN NF + Y L + ++D S N++ EL
Sbjct: 199 SSLQVLNMSHN-----------NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLE 383
L LNL+QN Q L+W++
Sbjct: 248 SSLAFLNLTQNDFACTCEHQ-SFLQWIK 274
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 48/282 (17%)
Query: 163 RDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGS 222
+D P L +L+++ N ++ P + NL L TL + +N IP + +
Sbjct: 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-------IPLGVFT 101
Query: 223 LLS-VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQL--------SG----------- 262
LS + L N I + ++ ++SL++GDN L SG
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161
Query: 263 ----NIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSH-NNLSGFIPSCV 317
+IP + L +LRLR N +L L +L++SH L P+C
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC- 220
Query: 318 GNFSRTEYVFYSTLYLVNLMDLS--SNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQ 375
LY +NL LS NL+ + + L++L LNLS N + +
Sbjct: 221 -------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 376 IGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417
+ +L L+ + L +L+ P + L ++ LN+S N L+
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 122/295 (41%), Gaps = 57/295 (19%)
Query: 143 WSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI-GNLQQLLTLVI 201
++ + KLY+ N P F Q +P LT L + N L S+P+ I N +L TL +
Sbjct: 97 YAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSM 154
Query: 202 SNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNN---HISGEVPPSLKNCSM--------- 249
SNNN L D+ + S++ L +N H+ + PSL + ++
Sbjct: 155 SNNN------LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208
Query: 250 ----MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305
+E LD N +I G L+IL+L+ N N L L +DLS
Sbjct: 209 IPIAVEELDASHN----SINVVRGPVNVELTILKLQHN--NLTDTAWLLNYPGLVEVDLS 262
Query: 306 HNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQ 365
+N L + R E ++ S LV L N + +P L L+LS
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPT-------LKVLDLSH 310
Query: 366 NHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH-----LNLSYNN 415
NHL+ + + + LE+L L N S+V+L H L LS+N+
Sbjct: 311 NHLLH-VERNQPQFDRLENLYLDHN--------SIVTLKLSTHHTLKNLTLSHND 356
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 122/295 (41%), Gaps = 57/295 (19%)
Query: 143 WSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI-GNLQQLLTLVI 201
++ + KLY+ N P F Q +P LT L + N L S+P+ I N +L TL +
Sbjct: 91 YAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSM 148
Query: 202 SNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNN---HISGEVPPSLKNCSM--------- 249
SNNN L D+ + S++ L +N H+ + PSL + ++
Sbjct: 149 SNNN------LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202
Query: 250 ----MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305
+E LD N +I G L+IL+L+ N N L L +DLS
Sbjct: 203 IPIAVEELDASHN----SINVVRGPVNVELTILKLQHN--NLTDTAWLLNYPGLVEVDLS 256
Query: 306 HNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQ 365
+N L + R E ++ S LV L N + +P L L+LS
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPT-------LKVLDLSH 304
Query: 366 NHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH-----LNLSYNN 415
NHL+ Q + + LE+L L N S+V+L H L LS+N+
Sbjct: 305 NHLLHVERNQ-PQFDRLENLYLDHN--------SIVTLKLSTHHTLKNLTLSHND 350
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 170 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFL 229
PFL LD S N L +V ++ G+L +L TL++ N +I + + S++ L
Sbjct: 325 PFL-HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE----LSKIAEMTTQMKSLQQL 379
Query: 230 IFCNNHISGEVPPSLKNCSMME---SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 286
N +S + +CS + SL++ N L+ I + P + +L L SN
Sbjct: 380 DISQNSVSYDEKKG--DCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK 434
Query: 287 GAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR 322
+IP ++ KL AL L+++ N L +P G F R
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKS-VPD--GIFDR 466
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 276 SILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVN 335
+IL + NY + ++ LS L IL +SHN + S EY
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY---------- 73
Query: 336 LMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVG-KIPTQIGKLEWLESLDLSKNKLSG 394
+DLS N L + + ++L L+LS N I + G + L+ L LS L
Sbjct: 74 -LDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 395 SIPPSMVSLTFMNHLNLS 412
S S+ + HLN+S
Sbjct: 130 S------SVLPIAHLNIS 141
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 19/217 (8%)
Query: 215 EIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPS 274
E+P I S + R+L N+I + ++ +E L LG N + I + S
Sbjct: 68 EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124
Query: 275 LSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGF-------IPSCV----GNFSRT 323
L+ L L N+ LS L L L +N + +PS + G +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 324 EYV---FYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE 380
EY+ + L+ + ++L N+ ++MP LT L+ L L +S NH P L
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242
Query: 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417
L+ L + +++S + L + LNL++NNLS
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 130/337 (38%), Gaps = 85/337 (25%)
Query: 70 TWLRNQTELTTLVLNNARISDTIP--------------NWFWQLD-----LALDELDVGS 110
T L+N T+L +++NN +I+D P N +D L+ L++ S
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 111 NELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIP 170
N +S I G + SN+ PL +
Sbjct: 139 NTISD-ISALSGLTSLQQLSFSSNQVTDLKPLANLTT----------------------- 174
Query: 171 FLTDLDISFNSLNG-SVPKSIGNLQQLLTLVISNNNYMSNN------------SLPGEIP 217
L LDIS N ++ SV + NL+ L I+ NN +S+ SL G
Sbjct: 175 -LERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 218 DSIGSLLSVRFLI---FCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPS 274
IG+L S+ L NN IS P L + + L LG NQ+S NI G + +
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAG--LTA 284
Query: 275 LSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYS----- 329
L+ L L N P + L L L L NN+S P V + ++ + +F+S
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 340
Query: 330 ------TLYLVNLMDLSSNNLSREMPVE-LTRLIHLG 359
L +N + N +S P+ LTR+ LG
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 377
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 24/159 (15%)
Query: 230 IFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAI 289
+ C + VP + + + L L DNQ++ P + +S+ +L L L SN GA+
Sbjct: 24 VDCRSKRHASVPAGIPTNAQI--LYLHDNQITKLEPG-VFDSLINLKELYLGSNQL-GAL 79
Query: 290 PPELC-KLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDL--SSNNLSR 346
P + L+ L +LDL N L+ +PS V F R LV+L +L N L+
Sbjct: 80 PVGVFDSLTQLTVLDLGTNQLT-VLPSAV--FDR----------LVHLKELFMCCNKLT- 125
Query: 347 EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESL 385
E+P + RL HL L L QN L IP G + L SL
Sbjct: 126 ELPRGIERLTHLTHLALDQNQL-KSIPH--GAFDRLSSL 161
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 183 NGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPP 242
+ SVP I Q+L Y+ +N + P SL++++ L +N +
Sbjct: 31 HASVPAGIPTNAQIL--------YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82
Query: 243 SLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHIL 302
+ + + LDLG NQL+ +P+ + + + L L + N +P + +L+ L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140
Query: 303 DLSHNNLSGFIPSCVGNFSRTEYVFYSTLY 332
L N L IP G F R + ++ L+
Sbjct: 141 ALDQNQLKS-IPH--GAFDRLSSLTHAYLF 167
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 131/337 (38%), Gaps = 85/337 (25%)
Query: 70 TWLRNQTELTTLVLNNARISDTIP--------------NWFWQLD-----LALDELDVGS 110
T L+N T+L +++NN +I+D P N +D L+ L++ S
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 111 NELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIP 170
N +S I G ++ SN+ PL +
Sbjct: 139 NTISD-ISALSGLTSLQQLNFSSNQVTDLKPLANLTT----------------------- 174
Query: 171 FLTDLDISFNSLNG-SVPKSIGNLQQLLTLVISNNNYMSNN------------SLPGEIP 217
L LDIS N ++ SV + NL+ L I+ NN +S+ SL G
Sbjct: 175 -LERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 218 DSIGSLLSVRFLI---FCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPS 274
IG+L S+ L NN IS P L + + L LG NQ+S NI G + +
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAG--LTA 284
Query: 275 LSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY------ 328
L+ L L N P + L L L L NN+S P V + ++ + +F+
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Query: 329 -----STLYLVNLMDLSSNNLSREMPVE-LTRLIHLG 359
+ L +N + N +S P+ LTR+ LG
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 377
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 334 VNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393
+N ++LSSN +S L+ L L LN S N + P + L LE LD+S NK+S
Sbjct: 131 LNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 119/296 (40%), Gaps = 50/296 (16%)
Query: 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 205
N+T L L +N P +F + L LD FNS++ P+ L Q+L L+ N
Sbjct: 26 NITVLNLTHNQLRRLPPTNFT-RYSQLAILDAGFNSISKLEPE----LCQILPLLKVLN- 79
Query: 206 YMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPS---------LKNCSMMESLDLG 256
+ +N L S +S + +FC N ++ + KN + LDL
Sbjct: 80 -LQHNEL---------SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLS 129
Query: 257 DNQLSGN-------IPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNL 309
N LS + + IL LRS E S+L LDLS N L
Sbjct: 130 HNGLSSTKLGTGVQLENLQELLLAKNKILALRSEEL------EFLGNSSLRKLDLSSNPL 183
Query: 310 SGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSN-NLSREMPVELTRLIHLGTLNLSQNHL 368
F P C + L+ + L + N +L+ ++ EL+ + L+L+ N L
Sbjct: 184 KEFSPGCFQTIGK--------LFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQL 234
Query: 369 VGKIPTQIGKLEW--LESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPK 422
+ + L+W L LDLS N L S L + +L+L YNN+ P+
Sbjct: 235 LATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 84/218 (38%), Gaps = 29/218 (13%)
Query: 172 LTDLDISFNSLNGSVPKSIGNLQQL--LTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFL 229
L LD+SFN + +G L+QL L SN MS S+ LS+R L
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV----------FLSLRNL 447
Query: 230 IFCN---NHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 286
I+ + H S +E L + N N I + +L+ L L
Sbjct: 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 287 GAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSR 346
P LS+L +L++SHN NF + Y L + ++D S N++
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHN-----------NFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
Query: 347 EMPVELTRL-IHLGTLNLSQNHLVGKIPTQIGKLEWLE 383
EL L LNL+QN Q L+W++
Sbjct: 557 SKKQELQHFPSSLAFLNLTQNDFACTCEHQ-SFLQWIK 593
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 15/170 (8%)
Query: 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIP--PELCKLSALHILDLSHN 307
+E LDL N LS +S L+ FNG I L L LD H+
Sbjct: 373 LEFLDLSRNGLS--FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430
Query: 308 NLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH 367
NL +E+ + +L + +D+S + L L L ++ N
Sbjct: 431 NLK----------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480
Query: 368 LVGK-IPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416
+P +L L LDLS+ +L P + SL+ + LN+S+NN
Sbjct: 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 130/337 (38%), Gaps = 85/337 (25%)
Query: 70 TWLRNQTELTTLVLNNARISDTIP--------------NWFWQLD-----LALDELDVGS 110
T L+N T+L +++NN +I+D P N +D L+ L++ S
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 111 NELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIP 170
N +S I G + SN+ PL +
Sbjct: 139 NTISD-ISALSGLTSLQQLSFSSNQVTDLKPLANLTT----------------------- 174
Query: 171 FLTDLDISFNSLNG-SVPKSIGNLQQLLTLVISNNNYMSNN------------SLPGEIP 217
L LDIS N ++ SV + NL+ L I+ NN +S+ SL G
Sbjct: 175 -LERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLDELSLNGNQL 229
Query: 218 DSIGSLLSVRFLI---FCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPS 274
IG+L S+ L NN IS P L + + L LG NQ+S NI G + +
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAG--LTA 284
Query: 275 LSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY------ 328
L+ L L N P + L L L L NN+S P V + ++ + +F+
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Query: 329 -----STLYLVNLMDLSSNNLSREMPVE-LTRLIHLG 359
+ L +N + N +S P+ LTR+ LG
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 377
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 90/226 (39%), Gaps = 31/226 (13%)
Query: 164 DFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQL--LTLVISNNNYMSNNSLPGEIPDSIG 221
DFG L LD+SFN + +G L+QL L SN MS S+
Sbjct: 369 DFGTTS--LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV--------- 416
Query: 222 SLLSVRFLIFCN-NHISGEVPPS--LKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSIL 278
LS+R LI+ + +H V + S +E L + N N I + +L+ L
Sbjct: 417 -FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 279 RLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMD 338
L P LS+L +L++SHN NF + Y L + ++D
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHN-----------NFFSLDTFPYKCLNSLQVLD 524
Query: 339 LSSNNLSREMPVELTRL-IHLGTLNLSQNHLVGKIPTQIGKLEWLE 383
S N++ EL L LNL+QN Q L+W++
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ-SFLQWIK 569
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 15/170 (8%)
Query: 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIP--PELCKLSALHILDLSHN 307
+E LDL N LS +S + L+ FNG I L L LD H+
Sbjct: 349 LEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 308 NLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH 367
NL +E+ + +L + +D+S + L L L ++ N
Sbjct: 407 NLK----------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 368 LVGK-IPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416
+P +L L LDLS+ +L P + SL+ + LN+S+NN
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 29/230 (12%)
Query: 207 MSNNSLPGEIPDS-IGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIP 265
+ NN + EI D +L ++ LI NN IS P + +E L L NQL +P
Sbjct: 59 LQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP 116
Query: 266 AWIGESMPSL-----SILRLRSNYFNGAIPPELCKLSALHILDLSHNNL--SGFIPSCVG 318
+ +++ L I ++R + FNG L+ + +++L N L SG
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 319 NFSRTEYVFYSTLYLVNL----------MDLSSNNLSREMPVELTRLIHLGTLNLSQNHL 368
+ Y+ + + + + L N +++ L L +L L LS N +
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 369 VGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 418
+ L L L+ NKL +P + ++ + L NN+S
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 29/230 (12%)
Query: 207 MSNNSLPGEIPDS-IGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIP 265
+ NN + EI D +L ++ LI NN IS P + +E L L NQL +P
Sbjct: 59 LQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP 116
Query: 266 AWIGESMPSL-----SILRLRSNYFNGAIPPELCKLSALHILDLSHNNL--SGFIPSCVG 318
+ +++ L I ++R + FNG L+ + +++L N L SG
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 319 NFSRTEYVFYSTLYLVNL----------MDLSSNNLSREMPVELTRLIHLGTLNLSQNHL 368
+ Y+ + + + + L N +++ L L +L L LS N +
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
Query: 369 VGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 418
+ L L L+ NKL +P + ++ + L NN+S
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 130/300 (43%), Gaps = 28/300 (9%)
Query: 102 ALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFN---VTKLYLNNNLFS 158
L ELD+ + LS +G + L +N++E + + N +T L + N
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 159 GPIPRDFGQKIPFLTDLDISFNSLNGS--VPKSIGNLQQLLTLVISNNNYMS-NNSLPGE 215
+ + + L +LD+S + + S + NL L +L +S N +S E
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 216 IPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSL 275
P L + L F + P +N +++ L+L + L + + + +P+L
Sbjct: 399 CPQ-----LELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDIS-SEQLFDGLPAL 451
Query: 276 SILRLRSNYF-NGAIPP--ELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLY 332
L L+ N+F G I L L L IL LS +LS S ++ F S L
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS----------SIDQHAFTS-LK 500
Query: 333 LVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 392
++N +DLS N L+ L+ L + LNL+ NH+ +P+ + L +++L +N L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 336 LMDLSSNNLSREMPVELTRLIHLGTLNLSQNHL-VGKIPT--QIGKLEWLESLDLSKNKL 392
L+D+SS L +P L LNL NH G I + L LE L LS L
Sbjct: 436 LLDISSEQLFDGLPA-------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 393 SGSIPPSMVSLTFMNHLNLSYNNLSG 418
S + SL MNH++LS+N L+
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTS 514
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 229 LIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGA 288
++ C+ VP SL + + + LDL N LS W + +L L L N+ N
Sbjct: 22 ILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI 79
Query: 289 IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREM 348
+ L LDLS N+L E++F S L + ++ L +N++
Sbjct: 80 SSEAFVPVPNLRYLDLSSNHLHTL----------DEFLF-SDLQALEVLLLYNNHIVVVD 128
Query: 349 PVELTRLIHLGTLNLSQNHLVGKIPTQI----GKLEWLESLDLSKNKL 392
+ L L LSQN + + P ++ KL L LDLS NKL
Sbjct: 129 RNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 289 IPPELCKLSALHILDLSHNNLS----GFIPSCVGNF-----SRTEYVFYSTLYLV----- 334
+P L +AL LDLSHNNLS + P+ + N S F S+ V
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 335 NLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393
+DLSSN+L + L L L L NH+V + L+ L LS+N++S
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 116/293 (39%), Gaps = 42/293 (14%)
Query: 122 GFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNS 181
GF F D N + G L +V L L++ R F + + L L++++N
Sbjct: 246 GFGFHNIKDPDQNTFAG---LARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNK 301
Query: 182 LNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDS-IGSLLSVRFLIFCNNHISGEV 240
+N ++ L L L +S N L GE+ S L V ++ NHI+
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYN-------LLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354
Query: 241 PPSLKNCSMMESLDLGDNQLSG-----NIPAWI--GESMPSLSILRLRSNYF-------- 285
+ K +++LDL DN L+ +IP G + +L + L +N
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414
Query: 286 NGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLS 345
N I L ++ L IL L+ N S SC G+ + +E L+L N L
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFS----SCSGDQTPSENPSLEQLFL------GENMLQ 464
Query: 346 REMPVELT-----RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393
EL L HL L L+ N+L P L L L L+ N+L+
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 297 SALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLI 356
S + DLS + + + S +F+ E + L+ N +++ L
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQ-----------LTLAQNEINKIDDNAFWGLT 323
Query: 357 HLGTLNLSQNHLVGKIPTQIGK-LEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNN 415
HL LNLSQN L G I +++ + L+ LE LDLS N + S + L + L L N
Sbjct: 324 HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 416 L 416
L
Sbjct: 383 L 383
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 267 WIGESMPSLSILRLRSN----------YFNG----AIPPELCKLSALHILDLSHNNLSGF 312
W + +L I + +N Y NG +P E+ LS L +LDLSHN L+
Sbjct: 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 313 IPSCVGNFSRTEYVFY 328
+P+ +G+ + +Y ++
Sbjct: 285 LPAELGSCFQLKYFYF 300
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 230 IFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-- 287
++ N + E+P +KN S + LDL N+L+ ++PA +G S +L+ YF
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELG------SCFQLKYFYFFDNM 304
Query: 288 --AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY 328
+P E L L L + N L + S T +FY
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN ++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLN--GLENLD 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN ++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLN--GLENLD 175
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN ++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLN--GLENLD 175
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN ++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLN--GLENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN+++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 175
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-----------TEYVFYSTLYLVNL 336
A+PP+L K + IL LS N L F + + ++R T+ TL ++
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396
+DLS N L + +P+ L L L++S N L + L L+ L L N+L ++
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 397 PPSMVSLT-FMNHLNLSYNNLSGEIP 421
PP +++ T + L+L+ NNL+ E+P
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN+++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 175
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-----------TEYVFYSTLYLVNL 336
A+PP+L K + IL LS N L F + + ++R T+ TL ++
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396
+DLS N L + +P+ L L L++S N L + L L+ L L N+L ++
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 397 PPSMVSLT-FMNHLNLSYNNLSGEIP 421
PP +++ T + L+L+ NNL+ E+P
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN+++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 175
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-----------TEYVFYSTLYLVNL 336
A+PP+L K + IL LS N L F + + ++R T+ TL ++
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396
+DLS N L + +P+ L L L++S N L + L L+ L L N+L ++
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 397 PPSMVSLT-FMNHLNLSYNNLSGEIP 421
PP +++ T + L+L+ NNL+ E+P
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN+++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN--GLENLD 175
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-----------TEYVFYSTLYLVNL 336
A+PP+L K + IL LS N L F + + ++R T+ TL ++
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396
+DLS N L + +P+ L L L++S N L + L L+ L L N+L ++
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 397 PPSMVSLT-FMNHLNLSYNNLSGEIP 421
PP +++ T + L+L+ NNL+ E+P
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 87 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 133
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN+++ E+P L N +E+LD
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN--GLENLD 176
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-----------TEYVFYSTLYLVNL 336
A+PP+L K + IL LS N L F + + ++R T+ TL ++
Sbjct: 25 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 82
Query: 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396
+DLS N L + +P+ L L L++S N L + L L+ L L N+L ++
Sbjct: 83 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 140
Query: 397 PPSMVSLT-FMNHLNLSYNNLSGEIP 421
PP +++ T + L+L+ NNL+ E+P
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLT-ELP 165
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMS 208
+N L S P+ GQ +P LT LD+SFN L S+P + +G LQ+L Y+
Sbjct: 86 HNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQEL---------YLK 132
Query: 209 NNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254
N L P + + L NN ++ E+P L N +E+LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLN--GLENLD 175
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR-----------TEYVFYSTLYLVNL 336
A+PP+L K + IL LS N L F + + ++R T+ TL ++
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGT 81
Query: 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396
+DLS N L + +P+ L L L++S N L + L L+ L L N+L ++
Sbjct: 82 LDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 397 PPSMVSLT-FMNHLNLSYNNLSGEIP 421
PP +++ T + L+L+ N+L+ E+P
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLT-ELP 164
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 250 MESLDLGDNQLSGN---IPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSAL-----HI 301
+ SLDL DN G + A P++ L LR+ P +C A H
Sbjct: 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALAAAGVQPHS 228
Query: 302 LDLSHNNLSGFI----PSCVG---------NFSRTEYVFYSTLYLVNLMDLSSNNLSRE- 347
LDLSHN+L + P C+ +F+ E V + ++DLSSN L+R
Sbjct: 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAP 288
Query: 348 MPVELTRLIHL 358
P EL + +L
Sbjct: 289 QPDELPEVDNL 299
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 97/249 (38%), Gaps = 26/249 (10%)
Query: 170 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFL 229
P T LD+ N ++ LQ L LV+ NN + + L ++ L
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE------KAFSPLRKLQKL 107
Query: 230 IFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF-NGA 288
NH+ E+PP+L S + L + DN++ +P + + +++ + + N N
Sbjct: 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163
Query: 289 IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREM 348
P L+ L +S L+G IP + T +N + L N +
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTG-IPK---DLPET----------LNELHLDHNKIQAIE 209
Query: 349 PVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH 408
+L R L L L N + + L L L L NKLS +P + L +
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268
Query: 409 LNLSYNNLS 417
+ L NN++
Sbjct: 269 VYLHTNNIT 277
>pdb|2H26|A Chain A, Human Cd1b In Complex With Endogenous Phosphatidylcholine
And Spacer
Length = 286
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 64 PGPKFPTWLRNQTELTTLVLNNARISDTIPN--WFWQLDLALDELDVGSNELSGRIPNS 120
P P + W+R + E ++ D +PN W W L LD D + LS R+ +S
Sbjct: 213 PKPVWVMWMRGEQEQ-----QGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHS 266
>pdb|1GZP|A Chain A, Cd1b In Complex With Gm2 Ganglioside
pdb|1GZQ|A Chain A, Cd1b In Complex With Phophatidylinositol
pdb|1UQS|A Chain A, The Crystal Structure Of Human Cd1b With A Bound Bacterial
Glycolipid
Length = 300
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 64 PGPKFPTWLRNQTELTTLVLNNARISDTIPN--WFWQLDLALDELDVGSNELSGRIPNS 120
P P + W+R + E ++ D +PN W W L LD D + LS R+ +S
Sbjct: 216 PKPVWVMWMRGEQEQ-----QGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHS 269
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 111/285 (38%), Gaps = 40/285 (14%)
Query: 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 205
N+T L L +N +P + LT LD+ FN+++ P+ L L L + +N
Sbjct: 26 NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 206 YMSNNSLPGEIPDSIGSLLSVRFLIFCNN----HISGEVPPSLKNCSMME-----SLDLG 256
S LS + FC N H+ +KN ++ +LDL
Sbjct: 85 L---------------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
Query: 257 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKL---SALHILDLSHNNLSGFI 313
N LS + L SN A+ E + S+L L+LS N + F
Sbjct: 130 HNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187
Query: 314 PSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIP 373
P C R +F + + L +L+ ++ +EL + L+LS + L
Sbjct: 188 PGCFHAIGRLFGLFLNNVQL-------GPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSN 239
Query: 374 TQIGKLEW--LESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416
T L+W L LDLS N L+ S L + + L YNN+
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 244 LKNCSMMESLDLGDNQLSG-------NIPAWIGESMPSLSILRLRSNYFNGAIPPELCK- 295
L+ +E LDL N L+ P + + + L IL L SN F+ IP E+ K
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD 558
Query: 296 LSALHILDLSHNNLSGFIPSCVGN 319
L L I+DL NNL+ +P+ V N
Sbjct: 559 LFELKIIDLGLNNLNT-LPASVFN 581
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 165 FGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN--YMSNNSLPGEIPDSIGS 222
G K LT LD+S+N+LN S L QL + NN ++ ++SL G
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-------- 294
Query: 223 LLSVRFL----IFCNNHISGEVPPSLKNCSM-----MESLDLGDNQLSGNIPAWIGESMP 273
L +VR+L F IS P + + S +E L++ DN + G I + + +
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLI 353
Query: 274 SLSILRLRSNY--FNGAIPPELCKL--SALHILDLSHNNLSGFIPSCVGNFSRTEYVFYS 329
+L L L +++ L S LHIL+L+ N + S+ E +S
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI-----------SKIESDAFS 402
Query: 330 TLYLVNLMDLSSNNLSREM 348
L + ++DL N + +E+
Sbjct: 403 WLGHLEVLDLGLNEIGQEL 421
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 29/130 (22%)
Query: 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGK-LEWLESLDLSKNKLSG- 394
+DL SN LS RL L L L+ N L +P I K L+ LE+L ++ NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 395 ----------------------SIPPSMV-SLTFMNHLNLSYNNLSGEIPK--VNQFQSL 429
S+PP + SLT + +L+L YN L +PK ++ SL
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159
Query: 430 KDPSIYAGNL 439
K+ +Y L
Sbjct: 160 KELRLYNNQL 169
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 111/285 (38%), Gaps = 40/285 (14%)
Query: 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 205
N+T L L +N +P + LT LD+ FN+++ P+ L L L + +N
Sbjct: 36 NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 206 YMSNNSLPGEIPDSIGSLLSVRFLIFCNN----HISGEVPPSLKNCSMME-----SLDLG 256
S LS + FC N H+ +KN ++ +LDL
Sbjct: 95 L---------------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 139
Query: 257 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKL---SALHILDLSHNNLSGFI 313
N LS + L SN A+ E + S+L L+LS N + F
Sbjct: 140 HNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 197
Query: 314 PSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIP 373
P C R +F + + L +L+ ++ +EL + L+LS + L
Sbjct: 198 PGCFHAIGRLFGLFLNNVQL-------GPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSN 249
Query: 374 TQIGKLEW--LESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416
T L+W L LDLS N L+ S L + + L YNN+
Sbjct: 250 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 244 LKNCSMMESLDLGDNQLSG-------NIPAWIGESMPSLSILRLRSNYFNGAIPPELCK- 295
L+ +E LDL N L+ P + + + L IL L SN F+ IP E+ K
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD 568
Query: 296 LSALHILDLSHNNLSGFIPSCVGN 319
L L I+DL NNL+ +P+ V N
Sbjct: 569 LFELKIIDLGLNNLNT-LPASVFN 591
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 36/225 (16%)
Query: 140 LPLWSFNVTKLYLNNNLFSGPIPRDF-GQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLT 198
L L + ++ L L+N+ S F G K LT LD+S+N+LN S L QL
Sbjct: 227 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 286
Query: 199 LVISNNN--YMSNNSLPGEIPDSIGSLLSVRFL----IFCNNHISGEVPPSLKNCSM--- 249
+ NN ++ ++SL G L +VR+L F IS P + + S
Sbjct: 287 FFLEYNNIQHLFSHSLHG--------LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 338
Query: 250 --MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY--FNGAIPPELCKL--SALHILD 303
+E L++ DN + G I + + + +L L L +++ L S LHIL+
Sbjct: 339 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 397
Query: 304 LSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREM 348
L+ N + S+ E +S L + ++DL N + +E+
Sbjct: 398 LTKNKI-----------SKIESDAFSWLGHLEVLDLGLNEIGQEL 431
>pdb|3T8X|A Chain A, Crystal Structure Of Human Cd1b In Complex With Synthetic
Antigenic Diacylsulfoglycolipid Sgl12 And Endogenous
Spacer
pdb|3T8X|C Chain C, Crystal Structure Of Human Cd1b In Complex With Synthetic
Antigenic Diacylsulfoglycolipid Sgl12 And Endogenous
Spacer
Length = 301
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 64 PGPKFPTWLRNQTELTTLVLNNARISDTIPN--WFWQLDLALDELDVGSNELSGRIPNS 120
P P + W+R + E ++ D +PN W W L LD D + LS R+ +S
Sbjct: 213 PKPVWVMWMRGEQEQ-----QGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHS 266
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 111/285 (38%), Gaps = 40/285 (14%)
Query: 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 205
N+T L L +N +P + LT LD+ FN+++ P+ L L L + +N
Sbjct: 31 NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 206 YMSNNSLPGEIPDSIGSLLSVRFLIFCNN----HISGEVPPSLKNCSMME-----SLDLG 256
S LS + FC N H+ +KN ++ +LDL
Sbjct: 90 L---------------SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 134
Query: 257 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKL---SALHILDLSHNNLSGFI 313
N LS + L SN A+ E + S+L L+LS N + F
Sbjct: 135 HNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 192
Query: 314 PSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIP 373
P C R +F + + L +L+ ++ +EL + L+LS + L
Sbjct: 193 PGCFHAIGRLFGLFLNNVQL-------GPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSN 244
Query: 374 TQIGKLEW--LESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416
T L+W L LDLS N L+ S L + + L YNN+
Sbjct: 245 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 244 LKNCSMMESLDLGDNQLSG-------NIPAWIGESMPSLSILRLRSNYFNGAIPPELCK- 295
L+ +E LDL N L+ P + + + L IL L SN F+ IP E+ K
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD 563
Query: 296 LSALHILDLSHNNLSGFIPSCVGN 319
L L I+DL NNL+ +P+ V N
Sbjct: 564 LFELKIIDLGLNNLNT-LPASVFN 586
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 35/198 (17%)
Query: 166 GQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN--YMSNNSLPGEIPDSIGSL 223
G K LT LD+S+N+LN S L QL + NN ++ ++SL G L
Sbjct: 249 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--------L 300
Query: 224 LSVRFL----IFCNNHISGEVPPSLKNCSM-----MESLDLGDNQLSGNIPAWIGESMPS 274
+VR+L F IS P + + S +E L++ DN + G I + + + +
Sbjct: 301 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLIN 359
Query: 275 LSILRLRSNY--FNGAIPPELCKL--SALHILDLSHNNLSGFIPSCVGNFSRTEYVFYST 330
L L L +++ L S LHIL+L+ N + S+ E +S
Sbjct: 360 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI-----------SKIESDAFSW 408
Query: 331 LYLVNLMDLSSNNLSREM 348
L + ++DL N + +E+
Sbjct: 409 LGHLEVLDLGLNEIGQEL 426
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 234 NHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN----GAI 289
N I G+ SL + +E LDL DN LS +W G + SL L L N + ++
Sbjct: 89 NTIEGDAFYSLGS---LEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSL 144
Query: 290 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLS--RE 347
P L L L I + V FS + ++ L +N +++ + +L +
Sbjct: 145 FPNLTNLQTLRIGN-------------VETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 191
Query: 348 MPVELTRLIHLGTLNLSQNHLVGKIPTQI-GKLEWLESLD 386
++ R IH TL+LS++ + +I I + +LE D
Sbjct: 192 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 231
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 248 SMMESLDLGDNQLSGNIPAWIG----ESMPSLSILRLRSNYFNGAIPPELCKLSALHILD 303
+ M+SLDL N+++ +IG + +L +L L+S+ N L +L LD
Sbjct: 52 AAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 106
Query: 304 LSHNNLSGFIPSCVGNFSRTEYV 326
LS N+LS S G S +Y+
Sbjct: 107 LSDNHLSSLSSSWFGPLSSLKYL 129
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 234 NHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN----GAI 289
N I G+ SL + +E LDL DN LS +W G + SL L L N + ++
Sbjct: 63 NTIEGDAFYSLGS---LEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSL 118
Query: 290 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLS--RE 347
P L L L I + V FS + ++ L +N +++ + +L +
Sbjct: 119 FPNLTNLQTLRIGN-------------VETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 348 MPVELTRLIHLGTLNLSQNHLVGKIPTQI-GKLEWLESLD 386
++ R IH TL+LS++ + +I I + +LE D
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 248 SMMESLDLGDNQLSGNIPAWIG----ESMPSLSILRLRSNYFNGAIPPELCKLSALHILD 303
+ M+SLDL N+++ +IG + +L +L L+S+ N L +L LD
Sbjct: 26 AAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80
Query: 304 LSHNNLSGFIPSCVGNFSRTEYV 326
LS N+LS S G S +Y+
Sbjct: 81 LSDNHLSSLSSSWFGPLSSLKYL 103
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 78/214 (36%), Gaps = 13/214 (6%)
Query: 202 SNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261
S ++ N + S S ++ L +N ++G + +++E LDL DN
Sbjct: 33 SQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQL 92
Query: 262 GNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFS 321
+ + L L L P L+AL L L NNL + +
Sbjct: 93 RVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG 152
Query: 322 RTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIH-LGTLNLSQNHLVGKIPTQIGKLE 380
++F L N + +P R +H L L L QNH+ P L
Sbjct: 153 NLTHLF-----------LHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 414
L +L L N LS +V L + +L L+ N
Sbjct: 201 RLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 334 VNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN--- 390
V +DLS+N ++ +L R ++L L L+ N + L LE LDLS N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 391 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLK 430
LS S + SLTF+N L Y L GE + L+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQ 152
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 335 NLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 394
N++D L+ E+P L I + L QN + P + L +DLS N++S
Sbjct: 14 NIVDCRGKGLT-EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 395 SIPPSMVSLTFMNHLNLSYNNLSGEIPK 422
P + L +N L L Y N E+PK
Sbjct: 71 LAPDAFQGLRSLNSLVL-YGNKITELPK 97
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 335 NLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 394
N++D L+ E+P L I + L QN + P + L +DLS N++S
Sbjct: 14 NIVDCRGKGLT-EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 395 SIPPSMVSLTFMNHLNLSYNNLSGEIPK 422
P + L +N L L Y N E+PK
Sbjct: 71 LAPDAFQGLRSLNSLVL-YGNKITELPK 97
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 334 VNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN--- 390
V +DLS+N ++ +L R ++L L L+ N + L LE LDLS N
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 391 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLK 430
LS S + SLTF+N L Y L GE + L+
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQ 126
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 354 RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSY 413
RL HL L L +N L G P ++ L L +NK+ + L + LNL
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 414 NNLSGEIP 421
N +S +P
Sbjct: 112 NQISCVMP 119
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 22/169 (13%)
Query: 220 IGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILR 279
+ SL S+ + N I+ P + N + + SL +G+N+++ P ++ L+ L
Sbjct: 195 LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSPLA---NLSQLTWLE 249
Query: 280 LRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDL 339
+ +N + + L+ L L++ N +S S + N S+ +F L
Sbjct: 250 IGTNQISDI--NAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLF-----------L 294
Query: 340 SSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLS 388
++N L E + L +L TL LSQNH+ P + L +S D +
Sbjct: 295 NNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDSADFA 341
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPK-SIGNLQQLLTLVISN 203
N+ +LY N+N + IP K+ LT LD++ N L S+P+ + NL+ L + + N
Sbjct: 57 VNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYN 114
Query: 204 N 204
N
Sbjct: 115 N 115
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 354 RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV-SLTFMNHLNLS 412
+L +L L L +N L KL L L+L+ N+L S+P + LT + L+LS
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLS 165
Query: 413 YNNLSGEIPK--VNQFQSLKDPSIYAGNLALCGDPLPKRCSEI 453
YN L +P+ ++ LKD +Y L D + R + +
Sbjct: 166 YNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 40/231 (17%)
Query: 220 IGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILR 279
+G + + ++ + NN + V SL+ + L+ NQL G +PA+ E L+ L
Sbjct: 303 VGEKIQIIYIGY-NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI--KLASLN 359
Query: 280 LRSNYFNGAIPPELCKLS-ALHILDLSHNNLSGFIP-----SCVGNFSRTEYVFYSTLYL 333
L N IP C + + L +HN L +IP V S ++ + +
Sbjct: 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSV 417
Query: 334 -----------------VNLMDLSSNNLSREMPVELTRLIH-LGTLNLSQNHLVGKIPTQ 375
V+ ++LS+N +S+ P EL L ++NL N L +IP
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLXGNXLT-EIPKN 475
Query: 376 IGKLE--------WLESLDLSKNKLSG-SIPPSMVSLTFMNHLNLSYNNLS 417
K E L S+DL NKL+ S +L ++ ++LSYN+ S
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 21/193 (10%)
Query: 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIP--PELCKLSALHILDLSHN 307
+E LDL N LS +S + L+ FNG I L L LD H+
Sbjct: 349 LEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 308 NLSGFIPSCVG-----------NFSRTEYVF---YSTLYLVNLMDLSSNNLSRE-MPVEL 352
NL V + + T F ++ L + ++ ++ N+ +P
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 353 TRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVS-LTFMNHLNL 411
T L +L L+LSQ L PT L L+ L+++ N+L S+P + LT + + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525
Query: 412 SYNNLSGEIPKVN 424
N P+++
Sbjct: 526 HTNPWDCSCPRID 538
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 225 SVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIP-AWIGESMPSLSILRLRSN 283
S FL F N + V +++L L N L A + ++M SL L + N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 284 YFNGAIPPELCKLS-ALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSN 342
N C + ++ +L+LS N L+G + C+ V ++DL +N
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-------------KVKVLDLHNN 460
Query: 343 NLSREMPVELTRLIHLGTLNLSQNHL 368
+ +P ++T L L LN++ N L
Sbjct: 461 RI-MSIPKDVTHLQALQELNVASNQL 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,228,512
Number of Sequences: 62578
Number of extensions: 539358
Number of successful extensions: 1534
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 262
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)