Query 040185
Match_columns 458
No_of_seqs 256 out of 3529
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-43 6.4E-48 380.1 30.0 388 48-445 184-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.1E-42 1.3E-46 369.8 28.5 406 18-441 114-584 (968)
3 KOG4194 Membrane glycoprotein 100.0 1E-38 2.2E-43 297.9 1.3 378 52-458 78-463 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.5E-34 5.5E-39 268.6 6.1 362 24-413 80-448 (873)
5 KOG0444 Cytoskeletal regulator 100.0 8.1E-33 1.8E-37 260.5 -4.2 349 43-420 23-378 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 2.1E-32 4.6E-37 257.7 -1.9 369 51-448 6-382 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 4.5E-33 9.7E-38 249.5 -8.5 396 16-441 40-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2.4E-30 5.1E-35 232.1 -6.3 358 22-417 114-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 2E-29 4.2E-34 247.7 -0.6 394 13-439 36-487 (1081)
10 PLN03210 Resistant to P. syrin 99.9 2.9E-23 6.3E-28 225.4 26.9 337 49-418 555-907 (1153)
11 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.5E-27 219.6 26.8 340 69-441 551-906 (1153)
12 KOG0618 Serine/threonine phosp 99.9 4E-26 8.7E-31 224.6 -2.6 357 21-416 67-488 (1081)
13 KOG4237 Extracellular matrix p 99.8 1E-23 2.2E-28 189.3 -6.1 294 140-458 61-370 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 5.2E-20 1.1E-24 186.7 17.7 265 76-400 201-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 9.4E-20 2E-24 184.8 17.7 263 101-422 201-463 (788)
16 KOG4237 Extracellular matrix p 99.8 1.3E-22 2.8E-27 182.2 -2.8 290 52-344 67-398 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.7E-19 1E-23 180.8 13.3 246 102-393 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.7E-18 5.9E-23 175.3 13.5 247 124-417 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 7.1E-19 1.5E-23 166.5 1.9 234 169-415 50-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-18 5.7E-23 162.6 1.3 263 149-419 2-293 (319)
21 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.6E-22 132.4 -3.4 169 116-296 25-195 (264)
22 KOG0617 Ras suppressor protein 99.6 2E-17 4.4E-22 132.5 -4.0 162 222-423 31-192 (264)
23 KOG3207 Beta-tubulin folding c 99.3 5.4E-13 1.2E-17 122.5 1.4 209 51-286 120-339 (505)
24 KOG1909 Ran GTPase-activating 99.2 3E-12 6.4E-17 114.5 -0.9 248 50-309 28-310 (382)
25 KOG3207 Beta-tubulin folding c 99.2 7.1E-12 1.5E-16 115.2 1.1 207 19-237 118-339 (505)
26 KOG1909 Ran GTPase-activating 99.1 4.6E-12 9.9E-17 113.4 -0.6 239 144-416 29-310 (382)
27 KOG0532 Leucine-rich repeat (L 99.1 3.5E-12 7.6E-17 120.8 -4.1 192 196-415 77-271 (722)
28 PLN03150 hypothetical protein; 99.1 2.3E-10 4.9E-15 116.9 8.3 118 333-451 419-538 (623)
29 COG4886 Leucine-rich repeat (L 99.1 2.5E-10 5.4E-15 111.3 7.4 155 225-398 141-295 (394)
30 KOG1259 Nischarin, modulator o 99.1 3.9E-11 8.4E-16 105.3 1.4 230 18-266 178-416 (490)
31 KOG1259 Nischarin, modulator o 99.0 9.4E-11 2E-15 102.9 1.9 131 273-420 284-415 (490)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.1E-10 4.5E-15 96.3 3.5 61 145-206 64-125 (175)
33 KOG2120 SCF ubiquitin ligase, 99.0 1.4E-11 3.1E-16 107.8 -4.2 174 53-235 186-374 (419)
34 COG4886 Leucine-rich repeat (L 99.0 6.8E-10 1.5E-14 108.2 6.8 191 106-311 98-291 (394)
35 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 94.1 4.3 123 52-202 19-148 (175)
36 KOG4658 Apoptotic ATPase [Sign 98.9 9.1E-10 2E-14 115.1 6.2 104 146-257 546-651 (889)
37 KOG0532 Leucine-rich repeat (L 98.9 1E-10 2.2E-15 111.2 -2.2 194 74-283 73-270 (722)
38 KOG4658 Apoptotic ATPase [Sign 98.8 3.6E-09 7.7E-14 110.7 5.7 198 101-311 523-731 (889)
39 PLN03150 hypothetical protein; 98.8 1.5E-08 3.2E-13 103.8 9.2 109 195-310 419-528 (623)
40 PF13855 LRR_8: Leucine rich r 98.7 7.7E-09 1.7E-13 71.3 2.9 61 356-416 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 4.4E-09 9.4E-14 102.9 0.8 243 52-313 72-321 (414)
42 KOG4341 F-box protein containi 98.6 4.4E-10 9.6E-15 103.1 -6.6 307 52-412 138-460 (483)
43 KOG0531 Protein phosphatase 1, 98.6 3.3E-09 7.1E-14 103.7 -1.2 247 143-421 70-322 (414)
44 PF13855 LRR_8: Leucine rich r 98.6 2.5E-08 5.5E-13 68.7 3.5 61 332-392 1-61 (61)
45 KOG2982 Uncharacterized conser 98.6 1.7E-08 3.7E-13 88.8 2.9 230 72-305 41-287 (418)
46 KOG2120 SCF ubiquitin ligase, 98.6 8.5E-10 1.8E-14 96.9 -6.2 60 146-205 186-245 (419)
47 KOG4341 F-box protein containi 98.4 6.8E-09 1.5E-13 95.4 -5.0 293 125-432 139-457 (483)
48 COG5238 RNA1 Ran GTPase-activa 98.3 1.5E-07 3.3E-12 81.9 1.5 234 146-417 31-316 (388)
49 KOG1859 Leucine-rich repeat pr 98.3 2.5E-08 5.5E-13 97.8 -5.0 193 53-261 85-292 (1096)
50 KOG2982 Uncharacterized conser 98.3 2.4E-07 5.2E-12 81.7 1.4 198 52-256 71-287 (418)
51 KOG1859 Leucine-rich repeat pr 98.3 7.7E-09 1.7E-13 101.3 -9.0 127 249-393 165-292 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.3 8.1E-08 1.8E-12 83.6 -1.9 210 74-286 28-285 (388)
53 KOG3665 ZYG-1-like serine/thre 98.1 7.1E-07 1.5E-11 91.4 0.6 131 144-281 147-283 (699)
54 KOG3665 ZYG-1-like serine/thre 98.0 1.1E-06 2.5E-11 89.9 0.4 109 21-137 121-233 (699)
55 KOG4579 Leucine-rich repeat (L 98.0 7.1E-07 1.5E-11 69.8 -2.0 82 227-310 30-113 (177)
56 PF12799 LRR_4: Leucine Rich r 97.9 7.1E-06 1.5E-10 51.7 1.9 36 381-417 2-37 (44)
57 PRK15386 type III secretion pr 97.8 0.00016 3.4E-09 68.7 10.3 88 52-153 52-140 (426)
58 KOG4579 Leucine-rich repeat (L 97.8 1.3E-06 2.9E-11 68.2 -2.9 130 275-419 29-161 (177)
59 KOG1644 U2-associated snRNP A' 97.8 6.4E-05 1.4E-09 63.1 6.6 83 53-138 43-127 (233)
60 PRK15386 type III secretion pr 97.8 0.00017 3.7E-09 68.5 10.0 56 191-258 49-104 (426)
61 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.4E-10 48.9 3.2 37 356-393 1-37 (44)
62 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 61.5 6.1 110 102-237 43-153 (233)
63 KOG1947 Leucine rich repeat pr 97.4 2.5E-05 5.4E-10 78.3 -1.5 244 162-417 180-440 (482)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00041 8.8E-09 60.8 1.6 63 169-234 90-153 (260)
65 KOG1947 Leucine rich repeat pr 96.9 0.00012 2.7E-09 73.3 -2.1 60 146-205 244-306 (482)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0036 7.9E-08 50.1 6.4 37 351-389 76-112 (129)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0039 8.4E-08 50.0 6.3 35 168-203 10-44 (129)
68 KOG2123 Uncharacterized conser 96.5 0.00011 2.4E-09 64.7 -4.5 77 331-410 40-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.3 0.0025 5.3E-08 56.1 2.4 110 292-414 38-153 (260)
70 KOG4308 LRR-containing protein 95.7 8.2E-05 1.8E-09 73.2 -10.7 60 358-417 235-303 (478)
71 KOG2123 Uncharacterized conser 95.7 0.001 2.2E-08 58.9 -2.9 83 53-141 20-105 (388)
72 KOG4308 LRR-containing protein 94.9 7.8E-05 1.7E-09 73.3 -13.7 182 103-287 89-304 (478)
73 KOG3864 Uncharacterized conser 94.8 0.0034 7.3E-08 53.0 -2.2 83 334-416 103-188 (221)
74 PF00560 LRR_1: Leucine Rich R 94.3 0.02 4.3E-07 29.8 0.8 12 382-393 2-13 (22)
75 PF13516 LRR_6: Leucine Rich r 93.6 0.022 4.8E-07 30.4 0.2 23 75-97 1-23 (24)
76 KOG3864 Uncharacterized conser 93.2 0.0073 1.6E-07 51.1 -3.1 82 52-133 101-185 (221)
77 PF00560 LRR_1: Leucine Rich R 92.7 0.045 9.8E-07 28.5 0.6 20 357-377 1-20 (22)
78 PF13504 LRR_7: Leucine rich r 89.4 0.27 5.9E-06 23.7 1.4 9 227-235 4-12 (17)
79 KOG4242 Predicted myosin-I-bin 89.3 3.1 6.7E-05 40.3 9.4 58 358-415 415-479 (553)
80 smart00370 LRR Leucine-rich re 86.6 0.8 1.7E-05 24.7 2.4 20 248-268 2-21 (26)
81 smart00369 LRR_TYP Leucine-ric 86.6 0.8 1.7E-05 24.7 2.4 20 248-268 2-21 (26)
82 smart00368 LRR_RI Leucine rich 85.7 0.49 1.1E-05 26.3 1.2 23 76-98 2-24 (28)
83 smart00367 LRR_CC Leucine-rich 82.3 0.63 1.4E-05 25.2 0.7 20 75-94 1-21 (26)
84 KOG0473 Leucine-rich repeat pr 78.0 0.075 1.6E-06 46.2 -5.8 86 48-137 38-124 (326)
85 KOG3763 mRNA export factor TAP 75.2 2.1 4.6E-05 42.2 2.4 63 74-137 216-283 (585)
86 KOG0473 Leucine-rich repeat pr 69.2 0.14 3E-06 44.6 -6.3 85 330-417 40-124 (326)
87 smart00365 LRR_SD22 Leucine-ri 61.6 7.8 0.00017 21.0 1.8 14 170-183 2-15 (26)
88 smart00364 LRR_BAC Leucine-ric 56.2 8.4 0.00018 20.9 1.4 18 248-266 2-19 (26)
89 KOG3763 mRNA export factor TAP 50.3 8.1 0.00018 38.4 1.2 66 330-395 216-285 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-43 Score=380.06 Aligned_cols=388 Identities=32% Similarity=0.483 Sum_probs=223.8
Q ss_pred CCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCC
Q 040185 48 WIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFP 126 (458)
Q Consensus 48 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L 126 (458)
+..+++|++|++++|.+.+.+|..++++++|++|+|++|.+++..|..+..+ ++|++|++++|.+.+..|..+ ++++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC-CCCCEEECcCceeccccChhHhCCCCC
Confidence 3344444444444444444444444444444445444444444444444444 455555555554444444333 34455
Q ss_pred CEEECcCCcccCCCCCC---CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEccc
Q 040185 127 GTVDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISN 203 (458)
Q Consensus 127 ~~L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~ 203 (458)
++|++++|++.+..|.. +.+|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 55555555444443332 23445555555554444444433 345555555555555444444445555555555555
Q ss_pred CcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccC
Q 040185 204 NNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 283 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~ 283 (458)
|. +.+..|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|
T Consensus 342 n~------l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-~~~L~~L~L~~n 414 (968)
T PLN00113 342 NK------FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDN 414 (968)
T ss_pred CC------CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC-CCCCCEEECcCC
Confidence 54 33444444555555555555555554444444444444444444444444344443333 455555555555
Q ss_pred cCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCcee------------------------------------e
Q 040185 284 YFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYV------------------------------------F 327 (458)
Q Consensus 284 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~------------------------------------~ 327 (458)
.+.+..|..+..+++|+.|++++|.+.+..+..+..++.+..+ .
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh
Confidence 5544444444444444444444444444333322222211111 1
Q ss_pred cccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCC
Q 040185 328 YSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMN 407 (458)
Q Consensus 328 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 407 (458)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 23455677778888877777787888888888888888888888888888888999999999999888888888889999
Q ss_pred eeecccCcCCccCCCCCCCCCCCCCccccCCCCCcCCC
Q 040185 408 HLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNLALCGDP 445 (458)
Q Consensus 408 ~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 445 (458)
.+++++|++.+.+|..+++..+.... +.||+.+|+.+
T Consensus 575 ~l~ls~N~l~~~~p~~~~~~~~~~~~-~~~n~~lc~~~ 611 (968)
T PLN00113 575 QVNISHNHLHGSLPSTGAFLAINASA-VAGNIDLCGGD 611 (968)
T ss_pred EEeccCCcceeeCCCcchhcccChhh-hcCCccccCCc
Confidence 99999999999999888888888877 88999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.1e-42 Score=369.84 Aligned_cols=406 Identities=32% Similarity=0.424 Sum_probs=256.1
Q ss_pred HHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHH
Q 040185 18 KKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFW 97 (458)
Q Consensus 18 ~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~ 97 (458)
...+++|++||+++|.... .+| ...+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~------~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTG------SIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred hccCCCCCEEECcCCcccc------ccC--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 4467888888888876431 111 12234555555555555544555555555555555555555545555554
Q ss_pred hhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC---CCCcc------------------------E
Q 040185 98 QLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVT------------------------K 149 (458)
Q Consensus 98 ~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~------------------------~ 149 (458)
++ ++|++|++++|.+.+..|..+ ++++|++|++++|.+.+..|.. +++|+ +
T Consensus 186 ~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 186 NL-TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hC-cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 44 455555555555544444333 3445555555555444444322 33444 4
Q ss_pred EeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEE
Q 040185 150 LYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFL 229 (458)
Q Consensus 150 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 229 (458)
|++++|.+.+..|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|. +.+..|..+..+++|+.|
T Consensus 265 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN------FTGKIPVALTSLPRLQVL 337 (968)
T ss_pred EECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc------cCCcCChhHhcCCCCCEE
Confidence 44444444444444443 24455555555555444444444455555555555554 444555556666666666
Q ss_pred EeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcC
Q 040185 230 IFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNL 309 (458)
Q Consensus 230 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 309 (458)
++++|.+.+..|..++.+++|+.|++++|.+.+.+|..+.. +++|+.+++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 66666666666666666666667777666666566665554 66677777777777767777777888888888888888
Q ss_pred cccCchhhccCCCCceeecc-------------cccc-----------------------cCEEEcccCcCCccCChhhc
Q 040185 310 SGFIPSCVGNFSRTEYVFYS-------------TLYL-----------------------VNLMDLSSNNLSREMPVELT 353 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~-------------~~~~-----------------------L~~L~l~~~~l~~~~~~~l~ 353 (458)
.+..|..+..++.+..+.++ .+++ |+.|++++|.+.+..|..+.
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh
Confidence 88888777777666544432 2333 44555555566566666777
Q ss_pred cccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC-CCCCCCCCC
Q 040185 354 RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV-NQFQSLKDP 432 (458)
Q Consensus 354 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~ 432 (458)
.+++|++|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|++|++++|++.+.+|.. ..++.|+.+
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 7888888888888888888888888889999999999998888888888999999999999998887764 567788888
Q ss_pred ccccCCCCC
Q 040185 433 SIYAGNLAL 441 (458)
Q Consensus 433 ~~~~~~~~~ 441 (458)
+ +.+|...
T Consensus 577 ~-ls~N~l~ 584 (968)
T PLN00113 577 N-ISHNHLH 584 (968)
T ss_pred e-ccCCcce
Confidence 8 5555433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-38 Score=297.88 Aligned_cols=378 Identities=22% Similarity=0.207 Sum_probs=310.5
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEE
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVD 130 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~ 130 (458)
+.-+.|++++|++....+..|.++++|+++++.+|.++ .+|...... .+|+.|+|.+|.|+..-...+ .++.|++||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc-cceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 36778999999998777888999999999999999997 777744443 789999999999985444444 689999999
Q ss_pred CcCCcccCCCCCCCC---CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCC
Q 040185 131 LRSNRYEGPLPLWSF---NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYM 207 (458)
Q Consensus 131 l~~n~~~~~~~~~l~---~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~ 207 (458)
++.|.++...-..++ ++++|+|++|.++..-...|. .+.+|..|.++.|+++..-+..|+++++|+.|+|..|++
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i- 233 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI- 233 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccccce-
Confidence 999999854433333 899999999999854444454 688999999999999966667788899999999999984
Q ss_pred CCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC
Q 040185 208 SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 287 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 287 (458)
...---.|..+++|+.|.+..|.+...-.+.|-.+.++++|+++.|++. .+.++-.-++.+|+.|+++.|.+..
T Consensus 234 -----rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 234 -----RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred -----eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhhe
Confidence 2222345788999999999999998766778888999999999999999 5555443459999999999999998
Q ss_pred cCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCc
Q 040185 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH 367 (458)
Q Consensus 288 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 367 (458)
+.++..+.+++|++|+|++|+++..-+..|. .+..|++|+|+.|.+.......|..+++|++|+|+.|.
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-----------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFR-----------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHH-----------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 8889999999999999999999966555544 45589999999999987777788899999999999998
Q ss_pred CCCccc---ccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC-CCCCCCCCCccccCCCCCcC
Q 040185 368 LVGKIP---TQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV-NQFQSLKDPSIYAGNLALCG 443 (458)
Q Consensus 368 ~~~~~~---~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~~~~~~~~ 443 (458)
+...+. ..+..+++|++|++.||++..+--.+|.+++.|+.|+|.+|.+-..-|.- .++ .|+++- +.....+|
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv-~nSssflC- 453 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV-MNSSSFLC- 453 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh-hcccceEE-
Confidence 875443 34567999999999999999555567999999999999999997654443 445 777766 55555555
Q ss_pred CCCCCCCCCCCCCCC
Q 040185 444 DPLPKRCSEIDGTSW 458 (458)
Q Consensus 444 ~~~~~~c~~~~~~~w 458 (458)
+|...|+++|
T Consensus 454 -----DCql~Wl~qW 463 (873)
T KOG4194|consen 454 -----DCQLKWLAQW 463 (873)
T ss_pred -----eccHHHHHHH
Confidence 9999999999
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-34 Score=268.56 Aligned_cols=362 Identities=23% Similarity=0.216 Sum_probs=300.1
Q ss_pred cceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccC
Q 040185 24 ATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLAL 103 (458)
Q Consensus 24 l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L 103 (458)
.+.||+|+|..-..+. ..+-.+++|++++|..|.+. .+|...+...+|+.|+|.+|.|+.+..+.+... +.|
T Consensus 80 t~~LdlsnNkl~~id~------~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l-~al 151 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDF------EFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL-PAL 151 (873)
T ss_pred eeeeeccccccccCcH------HHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhH-hhh
Confidence 3568999987532211 13455679999999999997 788877778889999999999998888888887 899
Q ss_pred cEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC---CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccC
Q 040185 104 DELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISF 179 (458)
Q Consensus 104 ~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 179 (458)
+.|||+.|.|+..-...+ +-.++++|+++.|+|+..-... +.+|..|.|+.|.++ .+|...++.+++|+.|++..
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccc
Confidence 999999999984333333 4578999999999998654333 558899999999999 88888888899999999999
Q ss_pred CCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCc
Q 040185 180 NSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQ 259 (458)
Q Consensus 180 ~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 259 (458)
|+|....--.|..+++|+.|.+..|. +...--..|..+.+++.|++..|.++..--+.+-.+++|+.|+++.|.
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~------I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRND------ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcC------cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 99984445678899999999999998 445555778889999999999999987666677789999999999999
Q ss_pred CCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEc
Q 040185 260 LSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDL 339 (458)
Q Consensus 260 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 339 (458)
|. .+...-++..++|+.|++++|.++...+.+|..+..|+.|.|++|++.......|. .+++|++|||
T Consensus 305 I~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-----------~lssL~~LdL 372 (873)
T KOG4194|consen 305 IQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-----------GLSSLHKLDL 372 (873)
T ss_pred hh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH-----------HhhhhhhhcC
Confidence 98 55554455589999999999999977778899999999999999998855444443 4558999999
Q ss_pred ccCcCCccC---ChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeeccc
Q 040185 340 SSNNLSREM---PVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSY 413 (458)
Q Consensus 340 ~~~~l~~~~---~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 413 (458)
++|.+...+ ...+.++++|+.|.+.+|++.......|..+++|++|||.+|.+..+-+.+|.++ .|++|-+..
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 999886553 4467789999999999999995555788999999999999999998889999998 898887763
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=8.1e-33 Score=260.52 Aligned_cols=349 Identities=23% Similarity=0.293 Sum_probs=194.4
Q ss_pred cCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccC--CCCC
Q 040185 43 GLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGR--IPNS 120 (458)
Q Consensus 43 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~ 120 (458)
.+|......++++-|.|...++. .+|+.++.+.+|++|.++.|++.... ..+..+ +.|+.+.+..|++... .+..
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~L-p~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDL-PRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccc-hhhHHHhhhccccccCCCCchh
Confidence 34444444555555555555554 45555566666666666655544221 223343 5555666655555422 2333
Q ss_pred CCCCCCCEEECcCCcccCCCCCCC---CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCc
Q 040185 121 LGFRFPGTVDLRSNRYEGPLPLWS---FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLL 197 (458)
Q Consensus 121 ~~~~~L~~L~l~~n~~~~~~~~~l---~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 197 (458)
+++..|..||+++|++.. .|..+ ++..+|+|++|+|. .+|..++-+++.|-.||+|+|++. .+|..+..+.+|+
T Consensus 100 F~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQ 176 (1255)
T ss_pred cccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhh
Confidence 456666666666666542 33322 25556666666665 556555555666666666666665 4555566666666
Q ss_pred EEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCC-CCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCcc
Q 040185 198 TLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHIS-GEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLS 276 (458)
Q Consensus 198 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 276 (458)
+|.|++|++ ....-..+..+++|+.|.+++..-+ ..+|.++..+.+|..++++.|.+. .+|+.++. +++|+
T Consensus 177 tL~Ls~NPL------~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~Lr 248 (1255)
T KOG0444|consen 177 TLKLSNNPL------NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLR 248 (1255)
T ss_pred hhhcCCChh------hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhh
Confidence 666666652 1111122334455555555555432 245556666666666666666665 66666655 66666
Q ss_pred EEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCcc-CChhhccc
Q 040185 277 ILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSRE-MPVELTRL 355 (458)
Q Consensus 277 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~ 355 (458)
.|++++|.++ .+.-......+|++|+++.|+++ ..|.++.+++ .|+.|.+.+|.+.-. +|..++.+
T Consensus 249 rLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-----------kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 249 RLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT-----------KLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred eeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH-----------HHHHHHhccCcccccCCccchhhh
Confidence 6666666665 33334455556666666666665 4555544433 455566666655322 55556666
Q ss_pred cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccC
Q 040185 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEI 420 (458)
Q Consensus 356 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 420 (458)
.+|+.+..++|.+. .+|+.+..|+.|+.|.|+.|.+. .+|+++.-++.|+.|++..|+-...+
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCC
Confidence 66666666666554 56666666666666666666555 55666666666666666666655333
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-32 Score=257.74 Aligned_cols=369 Identities=25% Similarity=0.313 Sum_probs=310.9
Q ss_pred CCcccEEEccCCCCC-CCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEE
Q 040185 51 PFKLTFIKIRSCQPG-PKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTV 129 (458)
Q Consensus 51 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L 129 (458)
++-++-.++++|.+. +.+|.....|+.++-|.|...++. .+|+.++.+ .+|++|.+++|++....-....++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 356788899999997 679999999999999999999996 899999998 99999999999998433334479999999
Q ss_pred ECcCCccc--CCCCCC--CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcc-cccCCCCCcEEEcccC
Q 040185 130 DLRSNRYE--GPLPLW--SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPK-SIGNLQQLLTLVISNN 204 (458)
Q Consensus 130 ~l~~n~~~--~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~L~~~ 204 (458)
++..|.+. |+.+.. +..|..|+|++|++. +.|..+. .-+++-.|++|+|+|. .+|. .+-++.-|-.|+|++|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 99999875 333333 458999999999998 8999886 4889999999999998 5554 4568899999999999
Q ss_pred cCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCC-CCCchhhhhCCCCccEEEcccC
Q 040185 205 NYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS-GNIPAWIGESMPSLSILRLRSN 283 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~~ 283 (458)
.+ ..+|+..+.+..|+.|.+++|++...--..+..+++|+.|.+++++-+ ..+|..+.. +.+|..++++.|
T Consensus 161 rL-------e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 161 RL-------EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSEN 232 (1255)
T ss_pred hh-------hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh-hhhhhhcccccc
Confidence 94 468888999999999999999986433344556788889999998655 467877765 999999999999
Q ss_pred cCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeC
Q 040185 284 YFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNL 363 (458)
Q Consensus 284 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 363 (458)
.+. ..|+.+..+++|+.|+|++|.++... -... .-.+|+.|+++.|.++ ..|..++.++.|+.|..
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~-~~~~-----------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITELN-MTEG-----------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceeeee-ccHH-----------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHh
Confidence 998 78999999999999999999998432 1111 2237999999999995 68999999999999999
Q ss_pred ccCcCCC-cccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCCCCCc
Q 040185 364 SQNHLVG-KIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNLALC 442 (458)
Q Consensus 364 ~~n~~~~-~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~ 442 (458)
.+|+++. -+|..++++..|+.+..++|.+. .+|+++++|+.|+.|.++.|.+.+.+..+..++.|+.++ ++.|+.+-
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD-lreNpnLV 376 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD-LRENPNLV 376 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceee-ccCCcCcc
Confidence 9998764 58899999999999999999987 899999999999999999999996666667899999999 99998886
Q ss_pred CCCCCC
Q 040185 443 GDPLPK 448 (458)
Q Consensus 443 ~~~~~~ 448 (458)
--|.+.
T Consensus 377 MPPKP~ 382 (1255)
T KOG0444|consen 377 MPPKPN 382 (1255)
T ss_pred CCCCcc
Confidence 555443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=4.5e-33 Score=249.49 Aligned_cols=396 Identities=24% Similarity=0.314 Sum_probs=258.9
Q ss_pred HHHHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChh
Q 040185 16 EWKKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNW 95 (458)
Q Consensus 16 ~~~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~ 95 (458)
.||.. +.++.++++.|..... ...+..+..+.+++++++++. ..|.+++.+..++.++.+.|+++ .+|..
T Consensus 40 ~wW~q-v~l~~lils~N~l~~l-------~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~ 109 (565)
T KOG0472|consen 40 NWWEQ-VDLQKLILSHNDLEVL-------REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQ 109 (565)
T ss_pred hhhhh-cchhhhhhccCchhhc-------cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHH
Confidence 45555 5566667777654322 223334456777777777776 56667777777777777777775 67777
Q ss_pred HHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCC--CCCccEEeccCCcCcCcCchhhhcCCCCCc
Q 040185 96 FWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLW--SFNVTKLYLNNNLFSGPIPRDFGQKIPFLT 173 (458)
Q Consensus 96 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 173 (458)
+... .++++++.+.|.+....+....+-.++.++..+|++....+.. +.++..+++.+|+++ ..|+.... ++.|+
T Consensus 110 i~s~-~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~ 186 (565)
T KOG0472|consen 110 IGSL-ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLK 186 (565)
T ss_pred Hhhh-hhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHH
Confidence 7776 6777777777777744444446667777777777776543333 336667777777776 55555543 77777
Q ss_pred EEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCcc-ccccCCCCCCE
Q 040185 174 DLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVP-PSLKNCSMMES 252 (458)
Q Consensus 174 ~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~ 252 (458)
++|...|.+. .+|..++.+.+|+.|++..|.+ ...| +|..+..|..|.++.|.+. .+| +..+.++++..
T Consensus 187 ~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki-------~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 187 HLDCNSNLLE-TLPPELGGLESLELLYLRRNKI-------RFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred hcccchhhhh-cCChhhcchhhhHHHHhhhccc-------ccCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 7777777665 6677777777777777777773 2344 5666667777777777765 333 33346677777
Q ss_pred EecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCC-----------
Q 040185 253 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFS----------- 321 (458)
Q Consensus 253 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~----------- 321 (458)
||+.+|+++ ++|..+.. +.+|..||+++|.++ ..|..++++ +|+.|.+.||.+.++-..-+.+-+
T Consensus 257 LDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred eeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 777777776 77776665 667777777777776 456666766 677777777665422100000000
Q ss_pred --------------------------------------------------------------------------------
Q 040185 322 -------------------------------------------------------------------------------- 321 (458)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (458)
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lke 412 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKE 412 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHH
Confidence
Q ss_pred ------------CCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCC
Q 040185 322 ------------RTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 389 (458)
Q Consensus 322 ------------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~ 389 (458)
+.....++.+++|..|++++|.+. ..|..++.+..|+.|+++.|.+. ..|.++.....++.+-.++
T Consensus 413 lvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 413 LVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred HHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 111112344566666677666663 35555666666777777777665 5666665555666666666
Q ss_pred CcccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCCCCC
Q 040185 390 NKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNLAL 441 (458)
Q Consensus 390 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~ 441 (458)
|++....++.+..+.+|.+|++.+|.+...+|.++.+++|+.++ +.|||+-
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLe-L~gNpfr 541 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLE-LDGNPFR 541 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEE-ecCCccC
Confidence 77775566668899999999999999998888889999999999 7777653
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2.4e-30 Score=232.10 Aligned_cols=358 Identities=28% Similarity=0.388 Sum_probs=214.7
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
.++..++.+.|..+ +++++++.+..+..++-.+|++. ..|..+.++.++..+++.+|++.. .|...-.+ +
T Consensus 114 ~~l~~l~~s~n~~~-------el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m-~ 183 (565)
T KOG0472|consen 114 ISLVKLDCSSNELK-------ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAM-K 183 (565)
T ss_pred hhhhhhhcccccee-------ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHH-H
Confidence 44556677766543 45556666666666666666665 455556666666666666666653 33323333 5
Q ss_pred cCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC--CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEcc
Q 040185 102 ALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW--SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDIS 178 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 178 (458)
.|++||...|.+. .+|..+ ++.+|+.|++..|++.. .|.. ...|++++++.|++. .+|.++.++++++..||++
T Consensus 184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 6666666555554 333333 45555555555555542 2222 123444444444443 4444444444444444444
Q ss_pred CCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCc-----------------------------------
Q 040185 179 FNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSL----------------------------------- 223 (458)
Q Consensus 179 ~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l----------------------------------- 223 (458)
.|+++ ..|+.+.-+.+|++||+++|.+ ...|.+++.+
T Consensus 261 dNklk-e~Pde~clLrsL~rLDlSNN~i-------s~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLRSLERLDLSNNDI-------SSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred ccccc-cCchHHHHhhhhhhhcccCCcc-------ccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 44444 3444444444444444444442 1233344444
Q ss_pred -----------------------------CCCcEEEeecccCCCCccccccCCC--CCCEEecCCCcCCCCCchhhhhCC
Q 040185 224 -----------------------------LSVRFLIFCNNHISGEVPPSLKNCS--MMESLDLGDNQLSGNIPAWIGESM 272 (458)
Q Consensus 224 -----------------------------~~L~~L~l~~~~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~l 272 (458)
.+.+.|++++-.++.+..+.|..-. -....+++.|++. ++|..+.. +
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-l 410 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-L 410 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-H
Confidence 3444444444444433333332221 1344555555555 55554433 2
Q ss_pred CCcc-EEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChh
Q 040185 273 PSLS-ILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVE 351 (458)
Q Consensus 273 ~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 351 (458)
..+. .+.+++|.+. ..|..++.+++|..|++++|-+. .+|..++. ...|+.++++.|++ ...|..
T Consensus 411 kelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~-----------lv~Lq~LnlS~NrF-r~lP~~ 476 (565)
T KOG0472|consen 411 KELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS-----------LVRLQTLNLSFNRF-RMLPEC 476 (565)
T ss_pred HHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhh-----------hhhhheeccccccc-ccchHH
Confidence 2222 2344444444 66777888999999999998776 55654443 33699999999998 567888
Q ss_pred hccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 352 LTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 352 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
+.....++.+-.++|++...-+..+..+.+|.+||+.+|.+. .+|+.++++.+|++|.++||++.
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 777778888888889998555556999999999999999998 88999999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=2e-29 Score=247.71 Aligned_cols=394 Identities=25% Similarity=0.297 Sum_probs=263.1
Q ss_pred hhhHHHHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCC
Q 040185 13 LKLEWKKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTI 92 (458)
Q Consensus 13 ~~~~~~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~ 92 (458)
.++++.+....|+.||+|+|... ++|..+..+++|++|+++.|.+. ..|....++++|+++.|.+|.+. ..
T Consensus 36 ~pl~~~~~~v~L~~l~lsnn~~~-------~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~l 106 (1081)
T KOG0618|consen 36 RPLEFVEKRVKLKSLDLSNNQIS-------SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SL 106 (1081)
T ss_pred CchHHhhheeeeEEeeccccccc-------cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cC
Confidence 34666667777999999998643 56667777889999999999887 67888899999999999988886 88
Q ss_pred ChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhc----
Q 040185 93 PNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQ---- 167 (458)
Q Consensus 93 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~---- 167 (458)
|..+..+ ++|++|+++.|.+. .+|..+ .+..++.+..++|......+.. .++.+++..+.+.+.++.++..
T Consensus 107 P~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~--~ik~~~l~~n~l~~~~~~~i~~l~~~ 182 (1081)
T KOG0618|consen 107 PASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT--SIKKLDLRLNVLGGSFLIDIYNLTHQ 182 (1081)
T ss_pred chhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc--cchhhhhhhhhcccchhcchhhhhee
Confidence 9999988 99999999999988 555433 5555555556555111111111 1344444444444333333321
Q ss_pred --------------CCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeec
Q 040185 168 --------------KIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCN 233 (458)
Q Consensus 168 --------------~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 233 (458)
.+++|+.+....|++.. ..-.-++++.|..++|.+ ....+. ..-.+|++++++.
T Consensus 183 ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l------~~~~~~--p~p~nl~~~dis~ 250 (1081)
T KOG0618|consen 183 LDLRYNEMEVLDLSNLANLEVLHCERNQLSE----LEISGPSLTALYADHNPL------TTLDVH--PVPLNLQYLDISH 250 (1081)
T ss_pred eecccchhhhhhhhhccchhhhhhhhcccce----EEecCcchheeeeccCcc------eeeccc--cccccceeeecch
Confidence 23333333333333321 001224455555555552 211111 1234778888888
Q ss_pred ccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccC
Q 040185 234 NHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFI 313 (458)
Q Consensus 234 ~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 313 (458)
+.+. .+|+.+..+.+|+.+++..|.+. .+|..++. ..+|+.+.+..|.+. .+|+..++..+|+.|++..|.+....
T Consensus 251 n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 251 NNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred hhhh-cchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccc
Confidence 8877 55577777888888888888886 77777766 777777777777777 55666777888888888888776433
Q ss_pred chhhccCC--------------------------------------CCceeecccccccCEEEcccCcCCccCChhhccc
Q 040185 314 PSCVGNFS--------------------------------------RTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRL 355 (458)
Q Consensus 314 ~~~~~~~~--------------------------------------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 355 (458)
+..+.... ......+.+.++|+.|+|++|++.......+.++
T Consensus 327 ~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 327 DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL 406 (1081)
T ss_pred hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch
Confidence 22221111 1111123456778888888888865555667778
Q ss_pred cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccC-CCCCCCCCCCCCcc
Q 040185 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEI-PKVNQFQSLKDPSI 434 (458)
Q Consensus 356 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~~~l~~~~~ 434 (458)
..|++|++++|+++ .+|..+..++.|++|...+|++. ..| .+.+++.|+.+|++.|++.... |...-.+.|+.++
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd- 482 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD- 482 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee-
Confidence 88888888888887 67778888888888888888887 677 6888999999999999987553 3332338899999
Q ss_pred ccCCC
Q 040185 435 YAGNL 439 (458)
Q Consensus 435 ~~~~~ 439 (458)
+.||.
T Consensus 483 lSGN~ 487 (1081)
T KOG0618|consen 483 LSGNT 487 (1081)
T ss_pred ccCCc
Confidence 88886
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.9e-23 Score=225.36 Aligned_cols=337 Identities=20% Similarity=0.224 Sum_probs=191.8
Q ss_pred CCCCcccEEEccCCCC------CCCCCccccCCC-CccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC
Q 040185 49 IPPFKLTFIKIRSCQP------GPKFPTWLRNQT-ELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL 121 (458)
Q Consensus 49 ~~~~~L~~L~l~~~~~------~~~~~~~l~~~~-~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 121 (458)
....+|+.|++..+.. ...+|..+..++ +|+.|++.++.+. .+|..+. . .+|++|+++++.+. .++..+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~-~-~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR-P-ENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC-c-cCCcEEECcCcccc-cccccc
Confidence 3445666666644321 112344444433 4666666665553 4454442 1 56666666666655 332222
Q ss_pred -CCCCCCEEECcCCcccCCCCCC--CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcE
Q 040185 122 -GFRFPGTVDLRSNRYEGPLPLW--SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLT 198 (458)
Q Consensus 122 -~~~~L~~L~l~~n~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 198 (458)
.+++|+.|+++++.....+|.. +++|++|++++|.....+|..+. .+++|+.|++++|.....+|..+ ++++|++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 4566666666655433333322 34666666666654445555554 36666666666654333444433 4566666
Q ss_pred EEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCC---C---CCchhhhhCC
Q 040185 199 LVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS---G---NIPAWIGESM 272 (458)
Q Consensus 199 L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~---~---~~~~~~~~~l 272 (458)
|++++|.. ...+|.. ..+|+.|+++++.+. .+|..+ .+++|++|.+.++... + .++......+
T Consensus 709 L~Lsgc~~------L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 709 LNLSGCSR------LKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred EeCCCCCC------ccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 66666652 1222221 235666666666654 344333 3555666655543221 0 1111112224
Q ss_pred CCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhh
Q 040185 273 PSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVEL 352 (458)
Q Consensus 273 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 352 (458)
++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|......|..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------NLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------CccccCEEECCCCCcccccccc-
Confidence 577777777776665677777777788888887765433444321 2457888888877654444432
Q ss_pred ccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCc
Q 040185 353 TRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 418 (458)
Q Consensus 353 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 418 (458)
..+|++|++++|.+. .+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|+-..
T Consensus 845 --~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 845 --STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred --ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 357888888888877 678788888888888888875555677777778888888888886443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.6e-22 Score=219.57 Aligned_cols=340 Identities=18% Similarity=0.168 Sum_probs=200.6
Q ss_pred CccccCCCCccEEEccCCC------cccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCC-
Q 040185 69 PTWLRNQTELTTLVLNNAR------ISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLP- 141 (458)
Q Consensus 69 ~~~l~~~~~L~~L~L~~~~------i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~- 141 (458)
+.+|.+|++|+.|.+..+. +...+|..+..++.+|+.|++.++.+. ..|..+...+|+.|++.++++.....
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCccccccccc
Confidence 4456677777777775442 222455556665556777777777665 66666666777777777776653221
Q ss_pred -CCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCccc
Q 040185 142 -LWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSI 220 (458)
Q Consensus 142 -~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 220 (458)
..+.+|++|+++++.....+|. +. .+++|++|++++|.....+|..+.++++|++|++++|. ....+|..+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~------~L~~Lp~~i 701 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE------NLEILPTGI 701 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC------CcCccCCcC
Confidence 2255777777776654335553 32 46777777777775544666667777777777777765 223444433
Q ss_pred CCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC-------cCCccc
Q 040185 221 GSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-------AIPPEL 293 (458)
Q Consensus 221 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~l 293 (458)
.+++|++|++++|.....+|.. ..+|+.|++++|.+. .+|..+. +++|+.|.+.++.... ..+...
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~--l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLR--LENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccc--ccccccccccccchhhccccccccchhhh
Confidence 5667777777777544344422 346777777777765 6665442 6667766666533210 011112
Q ss_pred cCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCccc
Q 040185 294 CKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIP 373 (458)
Q Consensus 294 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 373 (458)
...++|+.|++++|.....+|..+.. +++|+.|++++|...+.+|..+ .+++|++|++++|.....+|
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~-----------L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQN-----------LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhC-----------CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 23356777777777655555655444 3367777777665434445443 56677777777775443444
Q ss_pred ccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC-CCCCCCCCCccccCCCCC
Q 040185 374 TQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV-NQFQSLKDPSIYAGNLAL 441 (458)
Q Consensus 374 ~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~~~~~~ 441 (458)
.. .++|+.|++++|.+. .+|..+..+++|++|++++|+-.+.+|.. ..++.|+.++ +.++..+
T Consensus 843 ~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~-l~~C~~L 906 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD-FSDCGAL 906 (1153)
T ss_pred cc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee-cCCCccc
Confidence 32 246777777777776 56666777777777777775444444432 4556665555 4444433
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=4e-26 Score=224.60 Aligned_cols=357 Identities=27% Similarity=0.309 Sum_probs=259.6
Q ss_pred ccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhc
Q 040185 21 LISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLD 100 (458)
Q Consensus 21 ~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~ 100 (458)
+..|++++++.|... ++|...+...+|++++|.+|.+. ..|..+..+++|++|++++|++. ..|..+..+
T Consensus 67 l~~L~~ln~s~n~i~-------~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~l- 136 (1081)
T KOG0618|consen 67 LSHLRQLNLSRNYIR-------SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVL- 136 (1081)
T ss_pred HHHHhhcccchhhHh-------hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhh-
Confidence 456888999988543 56677788889999999999887 78999999999999999999996 666666554
Q ss_pred ccCcEEecCCc-------------------ccccCCCCCCCCCCCC-EEECcCCcccCCCCCCCC---------------
Q 040185 101 LALDELDVGSN-------------------ELSGRIPNSLGFRFPG-TVDLRSNRYEGPLPLWSF--------------- 145 (458)
Q Consensus 101 ~~L~~L~L~~~-------------------~l~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~--------------- 145 (458)
..++.+..++| .+.+.++..+ -.++ .|++++|.+.......+.
T Consensus 137 t~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i--~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l 214 (1081)
T KOG0618|consen 137 TAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI--YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSEL 214 (1081)
T ss_pred hHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch--hhhheeeecccchhhhhhhhhccchhhhhhhhcccceE
Confidence 45555555555 3333333332 2333 488888887622111122
Q ss_pred -----CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCccc
Q 040185 146 -----NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSI 220 (458)
Q Consensus 146 -----~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 220 (458)
+++.|+..+|.++ ...... ...+|+.++++++.+. .+|..+..+.+|+.++..+|.+ ...|..+
T Consensus 215 ~~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-------~~lp~ri 283 (1081)
T KOG0618|consen 215 EISGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-------VALPLRI 283 (1081)
T ss_pred EecCcchheeeeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhH-------HhhHHHH
Confidence 4555555555554 221111 2457888888888887 5677788888888888888883 3566667
Q ss_pred CCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhh-------------------------CCCCc
Q 040185 221 GSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGE-------------------------SMPSL 275 (458)
Q Consensus 221 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------~l~~L 275 (458)
....+|++|.+..|.+. .+|......+.|++|++..|.+. .+|..+.. ..+.|
T Consensus 284 ~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL 361 (1081)
T ss_pred hhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence 77777777777777776 55556677788888888888776 66554432 13345
Q ss_pred cEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccc
Q 040185 276 SILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRL 355 (458)
Q Consensus 276 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 355 (458)
+.|.+.+|.+++..-+.+....+|+.|+|++|++.......+ ..++.|++|++++|+++ .+|+.+..+
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~-----------~kle~LeeL~LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL-----------RKLEELEELNLSGNKLT-TLPDTVANL 429 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH-----------hchHHhHHHhcccchhh-hhhHHHHhh
Confidence 667777787777666778889999999999999984433333 34568999999999995 577899999
Q ss_pred cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcC
Q 040185 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 356 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 416 (458)
+.|+.|...+|.+. .+| .+..++.|+.+|++.|.++.........-|.|++||++||.-
T Consensus 430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 99999999999998 788 688999999999999999865433333338999999999984
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1e-23 Score=189.32 Aligned_cols=294 Identities=22% Similarity=0.213 Sum_probs=205.5
Q ss_pred CCCC-CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEccc-CcCCCCCCCcccCC
Q 040185 140 LPLW-SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISN-NNYMSNNSLPGEIP 217 (458)
Q Consensus 140 ~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~ 217 (458)
+|.. +..-.+++|..|+|+ .+|...++.+++|+.||+++|.|..+.|++|..++++..|.+-+ |. ++....
T Consensus 61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk------I~~l~k 133 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK------ITDLPK 133 (498)
T ss_pred CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc------hhhhhh
Confidence 4444 447788899999998 88888888899999999999999888889999988888877776 55 555566
Q ss_pred cccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC----------
Q 040185 218 DSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG---------- 287 (458)
Q Consensus 218 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~---------- 287 (458)
..|..+..++.|.+.-|++.-.....|..++++..|.+.+|.+. .++...+..+..++.+-+..|.+..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhH
Confidence 77888888898888888888777788888999999999999887 7777665567778877776665221
Q ss_pred --cCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCcc-CChhhccccCCCeeeCc
Q 040185 288 --AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSRE-MPVELTRLIHLGTLNLS 364 (458)
Q Consensus 288 --~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~ 364 (458)
..+..+++.....-..+.+.++..+.+..+. .....+.+--.+.+....+ ....|..+++|+.|+++
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~----------c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFL----------CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhh----------hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 1122222222222222222222222111111 1111222112222222223 33457788999999999
Q ss_pred cCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC-CCCCCCCCCccccCCCCCcC
Q 040185 365 QNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV-NQFQSLKDPSIYAGNLALCG 443 (458)
Q Consensus 365 ~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~~~~~~~~ 443 (458)
+|++++.-+.+|....+++.|.|..|++...-...|.++..|++|+|.+|+|+..-|.. ..+.+|.++. +=.
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~-------l~~ 355 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN-------LLS 355 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee-------hcc
Confidence 99999777888999999999999999998555567888999999999999998766654 2344444443 445
Q ss_pred CCCCCCCCCCCCCCC
Q 040185 444 DPLPKRCSEIDGTSW 458 (458)
Q Consensus 444 ~~~~~~c~~~~~~~w 458 (458)
|||.|+|...|+-+|
T Consensus 356 Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 356 NPFNCNCRLAWLGEW 370 (498)
T ss_pred CcccCccchHHHHHH
Confidence 789999999999888
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=5.2e-20 Score=186.71 Aligned_cols=265 Identities=23% Similarity=0.291 Sum_probs=152.3
Q ss_pred CCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCC
Q 040185 76 TELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNN 155 (458)
Q Consensus 76 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~ 155 (458)
..-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|.. .++|++|++++|+++. +|..+++|++|++++|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCccCc-ccCcccccceeeccCC
Confidence 34556777777765 4565443 36677777777766 44432 4567777777776663 3444566777777777
Q ss_pred cCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeeccc
Q 040185 156 LFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNH 235 (458)
Q Consensus 156 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 235 (458)
.++ .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|.+ .+ +|.. ..+|+.|++++|.
T Consensus 273 ~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L------~~-Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 273 PLT-HLPAL----PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQL------AS-LPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred chh-hhhhc----hhhcCEEECcCCccc-cccc---cccccceeECCCCcc------cc-CCCC---cccccccccccCc
Confidence 665 44431 345667777777766 3443 235677777777763 22 2221 1245666677776
Q ss_pred CCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCch
Q 040185 236 ISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPS 315 (458)
Q Consensus 236 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 315 (458)
++ .+|. -..+|+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+.. +|.
T Consensus 334 L~-~LP~---lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~ 399 (788)
T PRK15387 334 LT-SLPT---LPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV 399 (788)
T ss_pred cc-cccc---cccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCC
Confidence 66 3332 1246677777777776 55531 345666677776666 34432 2356667777766652 221
Q ss_pred hhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccccc
Q 040185 316 CVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGS 395 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 395 (458)
. .++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++.
T Consensus 400 l--------------~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 400 L--------------PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred c--------------ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 0 1246666666666643 3322 235666666666666 5666666666666666666666655
Q ss_pred CCccc
Q 040185 396 IPPSM 400 (458)
Q Consensus 396 ~~~~l 400 (458)
.+..+
T Consensus 461 ~~~~L 465 (788)
T PRK15387 461 TLQAL 465 (788)
T ss_pred HHHHH
Confidence 44433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=9.4e-20 Score=184.84 Aligned_cols=263 Identities=26% Similarity=0.309 Sum_probs=206.9
Q ss_pred ccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCC
Q 040185 101 LALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFN 180 (458)
Q Consensus 101 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 180 (458)
..-..|+++.++++ .+|..+. ++|+.|++.+|+++. +|..+++|++|++++|+++ .+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~-~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh-cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccCc----ccccceeeccCC
Confidence 34678999999998 6776553 589999999999985 5667789999999999998 66642 568999999999
Q ss_pred CCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcC
Q 040185 181 SLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQL 260 (458)
Q Consensus 181 ~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l 260 (458)
.+. .+|.. ..+|+.|++++|.+ . .+|. ..++|+.|++++|.+++ +|.. ..+|+.|++++|.+
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~L------t-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQL------T-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL 334 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCcc------c-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcc
Confidence 987 45542 36788999999984 3 2343 24689999999999984 4432 34688899999999
Q ss_pred CCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcc
Q 040185 261 SGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLS 340 (458)
Q Consensus 261 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 340 (458)
. .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+.. +|.. ..+|+.|+++
T Consensus 335 ~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--------------~~~L~~LdLs 390 (788)
T PRK15387 335 T-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL--------------PSGLKELIVS 390 (788)
T ss_pred c-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--------------ccccceEEec
Confidence 8 67741 458999999999998 45543 3578889999999874 3321 2369999999
Q ss_pred cCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccC
Q 040185 341 SNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEI 420 (458)
Q Consensus 341 ~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 420 (458)
+|.+.. +|.. .++|++|++++|.+. .+|... .+|+.|++++|+++ .+|..+..+++|+.|++++|++++.+
T Consensus 391 ~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 391 GNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 999975 4432 368999999999998 577543 46889999999998 78999999999999999999999765
Q ss_pred CC
Q 040185 421 PK 422 (458)
Q Consensus 421 p~ 422 (458)
|.
T Consensus 462 ~~ 463 (788)
T PRK15387 462 LQ 463 (788)
T ss_pred HH
Confidence 54
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-22 Score=182.25 Aligned_cols=290 Identities=17% Similarity=0.127 Sum_probs=203.4
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCC-cccccCCCCCC-CCCCCCEE
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGS-NELSGRIPNSL-GFRFPGTV 129 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~-~~~~L~~L 129 (458)
..-.+|+|..|++....+.+|+.+++||.|||++|.|+.+.|++|..+ +.|-.|-+.+ |+|++.....+ ++..++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 367889999999987778889999999999999999999999999998 6666665555 99984444445 78889999
Q ss_pred ECcCCcccCCCCCC---CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCc------------cCCcccccCCC
Q 040185 130 DLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLN------------GSVPKSIGNLQ 194 (458)
Q Consensus 130 ~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~------------~~~~~~l~~l~ 194 (458)
.+.-|++....... ++++..|.+.+|.+. .++...++.+..++.+.+..|... ...+..++...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 99888877554333 567788888888876 667666667888888888877622 11112222221
Q ss_pred CCcEEEcccCcC-------------------CCCCCCcccCC-cccCCcCCCcEEEeecccCCCCccccccCCCCCCEEe
Q 040185 195 QLLTLVISNNNY-------------------MSNNSLPGEIP-DSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLD 254 (458)
Q Consensus 195 ~L~~L~L~~~~~-------------------~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 254 (458)
...-..+.+.++ .+.+......| ..|+++++|++|++++|+++.+-+.+|.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 111111111111 11111222222 3477899999999999999988888999999999999
Q ss_pred cCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccC-----chhhccCCCCceeecc
Q 040185 255 LGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFI-----PSCVGNFSRTEYVFYS 329 (458)
Q Consensus 255 l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~~~~~~~~~ 329 (458)
+..|++. .+...+++++..|++|++.+|+++...|..|..+.+|..|.+-.|.+...- ..++.+-.........
T Consensus 305 L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 305 LTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ 383 (498)
T ss_pred cCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence 9999998 888888888999999999999999888889999999999999887665221 1122221122222233
Q ss_pred cccccCEEEcccCcC
Q 040185 330 TLYLVNLMDLSSNNL 344 (458)
Q Consensus 330 ~~~~L~~L~l~~~~l 344 (458)
.+..++.+.++...+
T Consensus 384 ~p~~~~~~~~~dv~~ 398 (498)
T KOG4237|consen 384 SPGFVRQIPISDVAF 398 (498)
T ss_pred CCchhccccchhccc
Confidence 344566666665544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.7e-19 Score=180.82 Aligned_cols=246 Identities=24% Similarity=0.415 Sum_probs=134.0
Q ss_pred cCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCC
Q 040185 102 ALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNS 181 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 181 (458)
+...|++++++++ .+|..+ .+.|+.|++++|+++......+.+|++|++++|.++ .+|..+. ++|+.|++++|.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcC-cCCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh---ccccEEECcCCc
Confidence 3455555555555 334322 234555666655555432223445666666666655 4554432 356666666666
Q ss_pred CccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCC
Q 040185 182 LNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 182 i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (458)
+. .+|..+. .+|++|++++|. +. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+.
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~------L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNK------IS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCc------cC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc
Confidence 65 4444332 356666666665 22 2333332 35666666666665 3333221 35666666666666
Q ss_pred CCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEccc
Q 040185 262 GNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSS 341 (458)
Q Consensus 262 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 341 (458)
.+|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|++. .+|..+ .++|+.|++++
T Consensus 318 -~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-------------p~~L~~LdLs~ 376 (754)
T PRK15370 318 -ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-------------PPTITTLDVSR 376 (754)
T ss_pred -cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-------------cCCcCEEECCC
Confidence 455433 3466666666666653 444332 56777777777665 233222 13567777777
Q ss_pred CcCCccCChhhccccCCCeeeCccCcCCCcccccc----cCCCCCcEEeCCCCccc
Q 040185 342 NNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQI----GKLEWLESLDLSKNKLS 393 (458)
Q Consensus 342 ~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l----~~~~~L~~L~L~~n~~~ 393 (458)
|.+.. +|..+. .+|+.|++++|++. .+|..+ ..++.+..+++.+|.+.
T Consensus 377 N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 377 NALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77653 343333 35777777777766 444433 33466777777777776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.7e-18 Score=175.28 Aligned_cols=247 Identities=23% Similarity=0.377 Sum_probs=193.0
Q ss_pred CCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEccc
Q 040185 124 RFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISN 203 (458)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~ 203 (458)
.+...|++++++++.........++.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 35678999998888543334568999999999998 7887764 58999999999998 5666553 5799999999
Q ss_pred CcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccC
Q 040185 204 NNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 283 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~ 283 (458)
|.+ . .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|
T Consensus 251 N~L------~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N 314 (754)
T PRK15370 251 NRI------T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSN 314 (754)
T ss_pred Ccc------C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCC
Confidence 984 3 4555443 48999999999998 5665553 58999999999998 777654 357899999999
Q ss_pred cCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeC
Q 040185 284 YFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNL 363 (458)
Q Consensus 284 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 363 (458)
.+. .+|..+ .++|+.|++++|.+++ +|..+ +++|+.|++++|.+.. +|..+. ++|++|++
T Consensus 315 ~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-------------~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdL 374 (754)
T PRK15370 315 SLT-ALPETL--PPGLKTLEAGENALTS-LPASL-------------PPELQVLDVSKNQITV-LPETLP--PTITTLDV 374 (754)
T ss_pred ccc-cCCccc--cccceeccccCCcccc-CChhh-------------cCcccEEECCCCCCCc-CChhhc--CCcCEEEC
Confidence 988 455443 3689999999999874 44322 2589999999999964 555443 68999999
Q ss_pred ccCcCCCcccccccCCCCCcEEeCCCCcccccCCccc----cCCCCCCeeecccCcCC
Q 040185 364 SQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSM----VSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 364 ~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l----~~l~~L~~L~l~~n~l~ 417 (458)
++|.++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+..|++.+|++.
T Consensus 375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 375 SRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999998 6776654 37999999999998 555544 34588999999999986
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=7.1e-19 Score=166.53 Aligned_cols=234 Identities=26% Similarity=0.297 Sum_probs=114.0
Q ss_pred CCCCcEEEccCCCCcc------CCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcC---CCcEEEeecccCCCC
Q 040185 169 IPFLTDLDISFNSLNG------SVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLL---SVRFLIFCNNHISGE 239 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~------~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~l~~~ 239 (458)
.+++++++++++.+.. ..+..+..+++|++|++++|.+ ....+..+..+. +|++|++++|.+.+.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL------GPDGCGVLESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC------ChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence 4556666666655441 1123344555666666666652 222222222222 366666666665521
Q ss_pred ----ccccccCC-CCCCEEecCCCcCCCCCchhh---hhCCCCccEEEcccCcCCCc----CCccccCCCCCCEEEcCCC
Q 040185 240 ----VPPSLKNC-SMMESLDLGDNQLSGNIPAWI---GESMPSLSILRLRSNYFNGA----IPPELCKLSALHILDLSHN 307 (458)
Q Consensus 240 ----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n 307 (458)
....+..+ ++|+.|++++|.+++.....+ ...+++|++|++++|.+.+. ++..+...++|+.|++++|
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 12233444 566666666666653221111 11245666666666665531 1223344456666666666
Q ss_pred cCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhcc-----ccCCCeeeCccCcCCC----cccccccC
Q 040185 308 NLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTR-----LIHLGTLNLSQNHLVG----KIPTQIGK 378 (458)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~n~~~~----~~~~~l~~ 378 (458)
.+.+.....+.. .+..+++|+.|++++|.+.+.....+.. .+.|++|++++|.+++ .+...+..
T Consensus 204 ~i~~~~~~~l~~-------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 276 (319)
T cd00116 204 GLTDEGASALAE-------TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276 (319)
T ss_pred ccChHHHHHHHH-------HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence 654332221111 1123445666666666655432222211 2566666666666542 12233444
Q ss_pred CCCCcEEeCCCCccccc----CCccccCC-CCCCeeecccCc
Q 040185 379 LEWLESLDLSKNKLSGS----IPPSMVSL-TFMNHLNLSYNN 415 (458)
Q Consensus 379 ~~~L~~L~L~~n~~~~~----~~~~l~~l-~~L~~L~l~~n~ 415 (458)
+++|+.+++++|.+.+. ..+.+... +.|+++++.+|+
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 56666666666666643 23333333 456666666655
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=2.6e-18 Score=162.62 Aligned_cols=263 Identities=20% Similarity=0.207 Sum_probs=183.1
Q ss_pred EEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccC----CcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcC
Q 040185 149 KLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGS----VPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLL 224 (458)
Q Consensus 149 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 224 (458)
.|+|..+.+++..-..++..+++|+.++++++.++.. ++..+...+.+++++++++.+..........+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665433334444578899999999988532 344566778899999999874210001122345566788
Q ss_pred CCcEEEeecccCCCCccccccCCCC---CCEEecCCCcCCCCCc----hhhhhCC-CCccEEEcccCcCCCc----CCcc
Q 040185 225 SVRFLIFCNNHISGEVPPSLKNCSM---MESLDLGDNQLSGNIP----AWIGESM-PSLSILRLRSNYFNGA----IPPE 292 (458)
Q Consensus 225 ~L~~L~l~~~~l~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~----~~~~ 292 (458)
+|++|++++|.+.+..+..+..+.+ |++|++++|.+.+... ..+.. + ++|+.+++++|.+.+. ....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-LPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHh-CCCCceEEEcCCCcCCchHHHHHHHH
Confidence 9999999999997656655555554 9999999999874222 22333 5 8999999999998742 3345
Q ss_pred ccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccC----ChhhccccCCCeeeCccCcC
Q 040185 293 LCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREM----PVELTRLIHLGTLNLSQNHL 368 (458)
Q Consensus 293 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~~ 368 (458)
+..+++|+.|++++|.+.+.....+.. .+...++|+.|++++|.+.+.. ...+..+++|++|++++|.+
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~-------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAE-------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHH-------HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 677789999999999887432211110 1123458999999999987543 34456688999999999998
Q ss_pred CCccccccc-----CCCCCcEEeCCCCcccc----cCCccccCCCCCCeeecccCcCCcc
Q 040185 369 VGKIPTQIG-----KLEWLESLDLSKNKLSG----SIPPSMVSLTFMNHLNLSYNNLSGE 419 (458)
Q Consensus 369 ~~~~~~~l~-----~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 419 (458)
.+.....+. ..+.|++|++++|.+++ .+.+.+..+++|+++++++|++...
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 853332222 24789999999999873 2345566678999999999999843
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-17 Score=132.41 Aligned_cols=169 Identities=26% Similarity=0.447 Sum_probs=131.1
Q ss_pred CCCCCCCCCCCCEEECcCCcccCCCCCC--CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCC
Q 040185 116 RIPNSLGFRFPGTVDLRSNRYEGPLPLW--SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNL 193 (458)
Q Consensus 116 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l 193 (458)
.+++.+.+.+++.|.+++|+++...|.. +.+|+.|++++|++. .+|..+. .++.|++|+++-|++. ..|..|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCC
Confidence 4455556667777777777777655544 667888888888887 7788876 4888888888888886 788888888
Q ss_pred CCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCC
Q 040185 194 QQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMP 273 (458)
Q Consensus 194 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 273 (458)
|.|+.||+.+|.+ -...+|..|..+..|+-|.+++|.+. .+|..++++++|+.|.+.+|++. ++|..+.. +.
T Consensus 102 p~levldltynnl-----~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt 173 (264)
T KOG0617|consen 102 PALEVLDLTYNNL-----NENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LT 173 (264)
T ss_pred chhhhhhcccccc-----ccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH-HH
Confidence 8888888888874 33456777777888888888888887 77778888888888888888888 88888876 88
Q ss_pred CccEEEcccCcCCCcCCccccCC
Q 040185 274 SLSILRLRSNYFNGAIPPELCKL 296 (458)
Q Consensus 274 ~L~~L~l~~~~~~~~~~~~l~~l 296 (458)
+|++|.+.+|.++ .+|+.++.+
T Consensus 174 ~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 174 RLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHHHhcccceee-ecChhhhhh
Confidence 8888888888887 666655543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2e-17 Score=132.51 Aligned_cols=162 Identities=30% Similarity=0.507 Sum_probs=101.3
Q ss_pred CcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCE
Q 040185 222 SLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHI 301 (458)
Q Consensus 222 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 301 (458)
.+.+.+.|.+++|+++ ..|..++.+.+|+.|++.+|++. ++|..+.+ ++.|+.|+++-|.+. ..|..|+.+|.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhh
Confidence 3445666677777776 55556777777777777777776 77777765 777777777777666 66777777777777
Q ss_pred EEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCC
Q 040185 302 LDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEW 381 (458)
Q Consensus 302 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 381 (458)
||+++|++... ..|..|..+..|+.|.+.+|.+. .+|..++++++
T Consensus 107 ldltynnl~e~----------------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~ 151 (264)
T KOG0617|consen 107 LDLTYNNLNEN----------------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN 151 (264)
T ss_pred hhccccccccc----------------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence 77777766522 13333444455555555555554 45555555566
Q ss_pred CcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC
Q 040185 382 LESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV 423 (458)
Q Consensus 382 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 423 (458)
|+.|.+.+|.+. .+|..++.+..|++|.+.+|.++..+|++
T Consensus 152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 666666655555 45555555566666666666655444444
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.4e-13 Score=122.47 Aligned_cols=209 Identities=21% Similarity=0.198 Sum_probs=112.7
Q ss_pred CCcccEEEccCCCCCCCCC-ccccCCCCccEEEccCCCcccC--CChhHHhhcccCcEEecCCcccccCCCCCCCCCCCC
Q 040185 51 PFKLTFIKIRSCQPGPKFP-TWLRNQTELTTLVLNNARISDT--IPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPG 127 (458)
Q Consensus 51 ~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~~~i~~~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~ 127 (458)
..+|+++.|.++.+..... .....|++++.|||+.|-+..- +.. |..-+++|+.|+++.|++......
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le~LNls~Nrl~~~~~s-------- 190 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-IAEQLPSLENLNLSSNRLSNFISS-------- 190 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHH-HHHhcccchhcccccccccCCccc--------
Confidence 3455555665555542111 2344555566666655544321 111 222225555555555555411111
Q ss_pred EEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCC
Q 040185 128 TVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYM 207 (458)
Q Consensus 128 ~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~ 207 (458)
.....++.++.|.+++|.++..-...+...+|+|+.|++.+|...........-+..|+.|+|++|+++
T Consensus 191 -----------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 191 -----------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred -----------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 111124566777777776654333334445778888888887432233334455667888888888753
Q ss_pred CCCCCcccCCcccCCcCCCcEEEeecccCCCCc-ccc-----ccCCCCCCEEecCCCcCCCCCc--hhhhhCCCCccEEE
Q 040185 208 SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEV-PPS-----LKNCSMMESLDLGDNQLSGNIP--AWIGESMPSLSILR 279 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~-----l~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~ 279 (458)
..+. -...+.++.|+.|+++.+.+.+.. |+. ...+++|++|++..|.+. .++ ..+.. +++|+.+.
T Consensus 260 ~~~~-----~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~-l~nlk~l~ 332 (505)
T KOG3207|consen 260 DFDQ-----GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT-LENLKHLR 332 (505)
T ss_pred cccc-----ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhc-cchhhhhh
Confidence 3211 133456777788888877776422 111 245677888888888775 222 22322 66777777
Q ss_pred cccCcCC
Q 040185 280 LRSNYFN 286 (458)
Q Consensus 280 l~~~~~~ 286 (458)
+..+.+.
T Consensus 333 ~~~n~ln 339 (505)
T KOG3207|consen 333 ITLNYLN 339 (505)
T ss_pred ccccccc
Confidence 7666665
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=3e-12 Score=114.54 Aligned_cols=248 Identities=20% Similarity=0.199 Sum_probs=134.0
Q ss_pred CCCcccEEEccCCCCCC----CCCccccCCCCccEEEccCCC---cccCCChhHHhh------cccCcEEecCCcccccC
Q 040185 50 PPFKLTFIKIRSCQPGP----KFPTWLRNQTELTTLVLNNAR---ISDTIPNWFWQL------DLALDELDVGSNELSGR 116 (458)
Q Consensus 50 ~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~~~---i~~~~~~~~~~~------~~~L~~L~L~~~~l~~~ 116 (458)
+...++.+++++|.+.. .+...+++.++|+.-++++-. ..+.+|+++..+ +++|++|+||.|.|...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 33466777777776632 234445566666666666542 222333333221 13555555555555433
Q ss_pred CCCCC-----CCCCCCEEECcCCcccCCCCCCCC-CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCC----
Q 040185 117 IPNSL-----GFRFPGTVDLRSNRYEGPLPLWSF-NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSV---- 186 (458)
Q Consensus 117 ~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~---- 186 (458)
.+..+ ++..|++|.+.+|.+.......+. .|.+|. .+ ... ..-+.|+++...+|++....
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~-------kk~-~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VN-------KKA-ASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HH-------hcc-CCCcceEEEEeeccccccccHHHH
Confidence 33322 344555555555444321111110 111111 00 001 13467788888877765322
Q ss_pred cccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCC----ccccccCCCCCCEEecCCCcCCC
Q 040185 187 PKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGE----VPPSLKNCSMMESLDLGDNQLSG 262 (458)
Q Consensus 187 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~ 262 (458)
...|...+.|+.+.+..|.|-..-. ......+..+++|+.||+.+|.++.. +...+..+++|+.|++++|.+..
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 2345566778888888777522111 12334566777888888888877642 33456667788888888887775
Q ss_pred CCchh----hhhCCCCccEEEcccCcCCCc----CCccccCCCCCCEEEcCCCcC
Q 040185 263 NIPAW----IGESMPSLSILRLRSNYFNGA----IPPELCKLSALHILDLSHNNL 309 (458)
Q Consensus 263 ~~~~~----~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l 309 (458)
..... +.++.|+|+.+.+.+|.++.. +...+...+.|+.|++++|++
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44333 334467788888888777632 122334467777778887777
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.1e-12 Score=115.21 Aligned_cols=207 Identities=18% Similarity=0.083 Sum_probs=128.3
Q ss_pred HhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCC--CCccccCCCCccEEEccCCCcccCCChhH
Q 040185 19 KILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPK--FPTWLRNQTELTTLVLNNARISDTIPNWF 96 (458)
Q Consensus 19 ~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~L~~~~i~~~~~~~~ 96 (458)
+++..|+++-+.+...-.... -.....+++++.|+|++|-+..- +......+++|+.|+|+.|++........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~-----~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGI-----EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhHHhhhheeecCccccccch-----hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 345667776665533211110 02345578999999999977532 33455689999999999998753333323
Q ss_pred HhhcccCcEEecCCcccccCCCC--CCCCCCCCEEECcCCcccCC--C-CCCCCCccEEeccCCcCcCcCc--hhhhcCC
Q 040185 97 WQLDLALDELDVGSNELSGRIPN--SLGFRFPGTVDLRSNRYEGP--L-PLWSFNVTKLYLNNNLFSGPIP--RDFGQKI 169 (458)
Q Consensus 97 ~~~~~~L~~L~L~~~~l~~~~~~--~~~~~~L~~L~l~~n~~~~~--~-~~~l~~L~~L~L~~~~~~~~~~--~~~~~~l 169 (458)
...+++|+.|.++.|+++..... ...+|+|+.|++..|..... . ...++.|++|+|++|++. ..+ .... .+
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~-~l 270 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG-TL 270 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc-cc
Confidence 33348899999999999833222 22789999999988842211 1 122567888888888776 223 2232 57
Q ss_pred CCCcEEEccCCCCccC-Cccc-----ccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCC
Q 040185 170 PFLTDLDISFNSLNGS-VPKS-----IGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHIS 237 (458)
Q Consensus 170 ~~L~~L~l~~~~i~~~-~~~~-----l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 237 (458)
|.|+.|+++.|.+... .|+. ...+++|++|+++.|++.... .-..+..+++|+.|.+..+.++
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~-----sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR-----SLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc-----ccchhhccchhhhhhccccccc
Confidence 8888888888877632 2222 234577777777777742211 1123344566666666666665
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=4.6e-12 Score=113.35 Aligned_cols=239 Identities=23% Similarity=0.248 Sum_probs=121.2
Q ss_pred CCCccEEeccCCcCcCcCchhhhc---CCCCCcEEEccCCC---CccCCc-------ccccCCCCCcEEEcccCcCCCCC
Q 040185 144 SFNVTKLYLNNNLFSGPIPRDFGQ---KIPFLTDLDISFNS---LNGSVP-------KSIGNLQQLLTLVISNNNYMSNN 210 (458)
Q Consensus 144 l~~L~~L~L~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~---i~~~~~-------~~l~~l~~L~~L~L~~~~~~~~~ 210 (458)
+..+.+|++++|.+...-...+.. +.++|+..+++.-- ....+| .++..+++|++|+||+|.+-. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~-~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP-K 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc-c
Confidence 346788888888775433333332 34566666666432 111222 223345677888888777311 0
Q ss_pred CCcccCCcccCCcCCCcEEEeecccCCCCccc-------------cccCCCCCCEEecCCCcCCCCCch----hhhhCCC
Q 040185 211 SLPGEIPDSIGSLLSVRFLIFCNNHISGEVPP-------------SLKNCSMMESLDLGDNQLSGNIPA----WIGESMP 273 (458)
Q Consensus 211 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-------------~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~ 273 (458)
.+ ..+.+.+.+...|++|.+.+|.+...-.. ..+.-++|+.+...+|++. ..+. ..++..+
T Consensus 108 g~-~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 108 GI-RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHP 185 (382)
T ss_pred ch-HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhcc
Confidence 00 01112234566777777777776532111 1233456667776666665 2221 1233356
Q ss_pred CccEEEcccCcCCCc----CCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCC
Q 040185 274 SLSILRLRSNYFNGA----IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMP 349 (458)
Q Consensus 274 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 349 (458)
.|+.+.++.|.+... ....+..+++|+.||+.+|-++...... +.
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-------------------------------La 234 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-------------------------------LA 234 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-------------------------------HH
Confidence 666666666655421 1234455666666666666554322211 22
Q ss_pred hhhccccCCCeeeCccCcCCCcccccc-----cCCCCCcEEeCCCCccccc----CCccccCCCCCCeeecccCcC
Q 040185 350 VELTRLIHLGTLNLSQNHLVGKIPTQI-----GKLEWLESLDLSKNKLSGS----IPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 350 ~~l~~~~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l 416 (458)
..++.+++|++|++.+|-+.......+ ...|+|+++.+.+|.++.. +...+...|.|..|+|++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 334445555666666555544332222 1245666666666666532 122233356666666666665
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=3.5e-12 Score=120.85 Aligned_cols=192 Identities=28% Similarity=0.444 Sum_probs=145.5
Q ss_pred CcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCc
Q 040185 196 LLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSL 275 (458)
Q Consensus 196 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 275 (458)
-...+++.|. + ..+|..+..+..|+.+.++.|.+. .+|+.+.++..|.+++++.|++. .+|..++ .--|
T Consensus 77 t~~aDlsrNR------~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpL 145 (722)
T KOG0532|consen 77 TVFADLSRNR------F-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPL 145 (722)
T ss_pred hhhhhccccc------c-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcc
Confidence 3445666666 3 356777777778888888888877 77888888999999999999998 8888887 4458
Q ss_pred cEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccc
Q 040185 276 SILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRL 355 (458)
Q Consensus 276 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 355 (458)
+.+.+++|+++ .+|+.++..+.|..||.+.|.+.. .|..+.. +.+|+.|.+..|++.. +|..+..+
T Consensus 146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-----------l~slr~l~vrRn~l~~-lp~El~~L 211 (722)
T KOG0532|consen 146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-----------LTSLRDLNVRRNHLED-LPEELCSL 211 (722)
T ss_pred eeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhh-----------HHHHHHHHHhhhhhhh-CCHHHhCC
Confidence 99999999988 778888888899999999998874 3433333 4478888888888854 55555544
Q ss_pred cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCcccc---CCCCCCeeecccCc
Q 040185 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV---SLTFMNHLNLSYNN 415 (458)
Q Consensus 356 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~---~l~~L~~L~l~~n~ 415 (458)
.|..|++++|++. .+|.+|.+|..|++|-|.+|.+. .-|..++ ..--.++|++.-|+
T Consensus 212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 5888999999988 88988999999999999999887 3332222 23345788888774
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=2.3e-10 Score=116.94 Aligned_cols=118 Identities=36% Similarity=0.596 Sum_probs=105.5
Q ss_pred ccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecc
Q 040185 333 LVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLS 412 (458)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 412 (458)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCccCCCCC--CCCCCCCCccccCCCCCcCCCCCCCCC
Q 040185 413 YNNLSGEIPKVN--QFQSLKDPSIYAGNLALCGDPLPKRCS 451 (458)
Q Consensus 413 ~n~l~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~c~ 451 (458)
+|++.+.+|..- .+..+..++ +.+|..+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCc
Confidence 999999998752 234556677 88999999988766664
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.5e-10 Score=111.29 Aligned_cols=155 Identities=35% Similarity=0.548 Sum_probs=76.0
Q ss_pred CCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEc
Q 040185 225 SVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDL 304 (458)
Q Consensus 225 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 304 (458)
+|+.|++++|.+. .+|..++.+++|+.|++++|++. .++..... .+.|+.+++++|.+. .+|........|+++.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 3444444444443 22223444444444444444444 44333322 444444455444444 23333333333444445
Q ss_pred CCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcE
Q 040185 305 SHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLES 384 (458)
Q Consensus 305 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 384 (458)
++|.+. ..+..+. ....+..+.+.+|.+.. .+..+..++++++|++++|.+. .++. ++...+++.
T Consensus 217 ~~N~~~-~~~~~~~-----------~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~ 281 (394)
T COG4886 217 SNNSII-ELLSSLS-----------NLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRE 281 (394)
T ss_pred cCCcce-ecchhhh-----------hcccccccccCCceeee-ccchhccccccceecccccccc-cccc-ccccCccCE
Confidence 444321 1111111 12233333444444422 2455666777888888888877 4444 777788888
Q ss_pred EeCCCCcccccCCc
Q 040185 385 LDLSKNKLSGSIPP 398 (458)
Q Consensus 385 L~L~~n~~~~~~~~ 398 (458)
|+++++.+....+.
T Consensus 282 L~~s~n~~~~~~~~ 295 (394)
T COG4886 282 LDLSGNSLSNALPL 295 (394)
T ss_pred EeccCccccccchh
Confidence 88888887755443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.9e-11 Score=105.27 Aligned_cols=230 Identities=19% Similarity=0.148 Sum_probs=134.9
Q ss_pred HHhccccceeeccCCcchhhc--cccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChh
Q 040185 18 KKILISATRINKSDNSSVISE--FSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNW 95 (458)
Q Consensus 18 ~~~~~~l~~l~~s~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~ 95 (458)
..+++.+.+|.++....-... .....+|..+.-.++|..+.++.|.-. .+.+....-+.|+++...+..+++. |.
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~-~~- 254 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDV-PS- 254 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccccc-cc-
Confidence 445667777777664432111 111124444455557777777776554 3333334446666666665555421 11
Q ss_pred HHhhcccCcEEecCCcccc-cCCCCC--C-CCCCCCEEECcCCcccCCC--CCCCCCccEEeccCCcCcCcCchhhhcCC
Q 040185 96 FWQLDLALDELDVGSNELS-GRIPNS--L-GFRFPGTVDLRSNRYEGPL--PLWSFNVTKLYLNNNLFSGPIPRDFGQKI 169 (458)
Q Consensus 96 ~~~~~~~L~~L~L~~~~l~-~~~~~~--~-~~~~L~~L~l~~n~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 169 (458)
+... ..+ -|.....-+ ...+.. . .-+.|+++|+++|.|+... ....+.++.|++++|.+. .+.. + +.+
T Consensus 255 l~pe-~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-a~L 328 (490)
T KOG1259|consen 255 LLPE-TIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-L-AEL 328 (490)
T ss_pred ccch-hhh--cCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh-h-hhc
Confidence 0000 111 111111000 011111 1 2347888888888887443 233678888999998886 3322 3 358
Q ss_pred CCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCC-CccccccCCC
Q 040185 170 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISG-EVPPSLKNCS 248 (458)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~ 248 (458)
++|++||+++|.++ .....=..+-++++|.+++|.+ +.-..++++.+|.+||+.+|+|.. .-...+++++
T Consensus 329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i--------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI--------ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP 399 (490)
T ss_pred ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH--------hhhhhhHhhhhheeccccccchhhHHHhccccccc
Confidence 89999999999876 2222233567889999998884 223456778889999999998873 1234678899
Q ss_pred CCCEEecCCCcCCCCCch
Q 040185 249 MMESLDLGDNQLSGNIPA 266 (458)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~ 266 (458)
.|+.+.+.+|.+. .++.
T Consensus 400 CLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 400 CLETLRLTGNPLA-GSVD 416 (490)
T ss_pred HHHHHhhcCCCcc-ccch
Confidence 9999999999887 4443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=9.4e-11 Score=102.89 Aligned_cols=131 Identities=28% Similarity=0.295 Sum_probs=101.3
Q ss_pred CCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhh
Q 040185 273 PSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVEL 352 (458)
Q Consensus 273 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 352 (458)
..|.++++++|.++ .+.+++.-.|.++.|++++|++..+.. +..+++|+.||+++|.++. ...+-
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-------------La~L~~L~~LDLS~N~Ls~-~~Gwh 348 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-------------LAELPQLQLLDLSGNLLAE-CVGWH 348 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-------------hhhcccceEeecccchhHh-hhhhH
Confidence 46888999999888 566777888999999999998873321 3346689999999998854 33445
Q ss_pred ccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccccc-CCccccCCCCCCeeecccCcCCccC
Q 040185 353 TRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGS-IPPSMVSLTFMNHLNLSYNNLSGEI 420 (458)
Q Consensus 353 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~ 420 (458)
..+.+++.|.+++|.+. ....+.++-+|..||+++|+|... -...++++|.|+.+.+.+||+.+.+
T Consensus 349 ~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 56789999999999875 235577888899999999988743 3456888999999999999997543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.1e-10 Score=96.27 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=20.2
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccC-CcccccCCCCCcEEEcccCcC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGS-VPKSIGNLQQLLTLVISNNNY 206 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~L~~~~~ 206 (458)
.+|++|++++|.++ .+...+...+|+|++|++++|+|... ....++.+++|++|++.+|++
T Consensus 64 ~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 64 PRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred hhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 34444445555444 33333333366666666666666521 123345566666666666663
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.4e-11 Score=107.84 Aligned_cols=174 Identities=18% Similarity=0.122 Sum_probs=92.9
Q ss_pred cccEEEccCCCCCCC-CCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCc-ccccCCCCCC--CCCCCCE
Q 040185 53 KLTFIKIRSCQPGPK-FPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSN-ELSGRIPNSL--GFRFPGT 128 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~--~~~~L~~ 128 (458)
+|+.++|++..++.. .-..++.|.+|+.|.|.++.+.|.+...+.+. .+|+.|+++.+ +++......+ .++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 466666666655421 22334566666666666666666666666666 66666666663 3332222222 4556666
Q ss_pred EECcCCcccCCC-----CCCCCCccEEeccCCcC--cCcCchhhhcCCCCCcEEEccCCC-CccCCcccccCCCCCcEEE
Q 040185 129 VDLRSNRYEGPL-----PLWSFNVTKLYLNNNLF--SGPIPRDFGQKIPFLTDLDISFNS-LNGSVPKSIGNLQQLLTLV 200 (458)
Q Consensus 129 L~l~~n~~~~~~-----~~~l~~L~~L~L~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~ 200 (458)
|+++.|...... ...-.+|..|+++++.- ...-...+...+|+|.+||++.|. ++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666655443221 12233666777776631 112222333457777777777763 3333334455667777777
Q ss_pred cccCcCCCCCCCcccCCc---ccCCcCCCcEEEeeccc
Q 040185 201 ISNNNYMSNNSLPGEIPD---SIGSLLSVRFLIFCNNH 235 (458)
Q Consensus 201 L~~~~~~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~ 235 (458)
++.|.. ..|+ .+...++|.+|++-++-
T Consensus 345 lsRCY~--------i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYD--------IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcC--------CChHHeeeeccCcceEEEEecccc
Confidence 777662 2222 23445566666655543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=6.8e-10 Score=108.25 Aligned_cols=191 Identities=34% Similarity=0.492 Sum_probs=86.7
Q ss_pred EecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCC--CC-CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCC
Q 040185 106 LDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLW--SF-NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSL 182 (458)
Q Consensus 106 L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--l~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 182 (458)
+++..+.+.........++.++.+++.+|.++...+.. +. +|++|++++|++. .++..+. .+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchh
Confidence 44444444222222223344555555555544333322 21 4555555555554 3333332 355555555555555
Q ss_pred ccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCC
Q 040185 183 NGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSG 262 (458)
Q Consensus 183 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 262 (458)
. .++......+.|+.|++++|.+ . .+|........|+++.+++|.+. ..+..+..+.++..+.+..|++.
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i------~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~- 245 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKI------S-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE- 245 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCcc------c-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-
Confidence 4 3333333445555555555552 1 22332223333555555555322 23334445555555555555544
Q ss_pred CCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcc
Q 040185 263 NIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSG 311 (458)
Q Consensus 263 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 311 (458)
..+..+.. +++++.|++++|.+... +. +....+++.|+++++.+..
T Consensus 246 ~~~~~~~~-l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 246 DLPESIGN-LSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred eccchhcc-ccccceecccccccccc-cc-ccccCccCEEeccCccccc
Confidence 33333332 45555555555555522 22 5555555555555555543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.7e-10 Score=94.13 Aligned_cols=123 Identities=23% Similarity=0.181 Sum_probs=32.5
Q ss_pred CcccEEEccCCCCCCCCCcccc-CCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC--CCCCCCE
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLR-NQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL--GFRFPGT 128 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~--~~~~L~~ 128 (458)
.++++|+|+++.+.. +. .++ .+.+|+.|++++|.|+.. +.+..+ +.|++|++++|+++ .+...+ .+++|++
T Consensus 19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L-~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGL-PRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccCh-hhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 345566666665542 22 233 355555566655555421 123333 55555555555555 222111 2445555
Q ss_pred EECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCc----ccccCCCCCcEEEcc
Q 040185 129 VDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVIS 202 (458)
Q Consensus 129 L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~L~ 202 (458)
|++++|++. ....-.....+++|++|++.+|.+... + ..+..+|+|+.||-.
T Consensus 93 L~L~~N~I~---------------------~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKIS---------------------DLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS------------------------SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCC---------------------ChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 555555443 211111222467777777777776522 2 123456677766644
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=9.1e-10 Score=115.12 Aligned_cols=104 Identities=27% Similarity=0.376 Sum_probs=47.2
Q ss_pred CccEEeccCCc--CcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCc
Q 040185 146 NVTKLYLNNNL--FSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSL 223 (458)
Q Consensus 146 ~L~~L~L~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 223 (458)
+|+.|-+.+|. +. .++..++..+|.|+.||+++|.-.+.+|..++.+.+|++|+++++.+ ..+|..++.+
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-------~~LP~~l~~L 617 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-------SHLPSGLGNL 617 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-------cccchHHHHH
Confidence 34444444443 22 34444444455555555555443334455555555555555554442 1344444555
Q ss_pred CCCcEEEeecccCCCCccccccCCCCCCEEecCC
Q 040185 224 LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGD 257 (458)
Q Consensus 224 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 257 (458)
..|.+|++..+......|.....+++|++|.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeec
Confidence 5555555544443323333333344555444433
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=1e-10 Score=111.17 Aligned_cols=194 Identities=26% Similarity=0.388 Sum_probs=147.6
Q ss_pred CCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC-CCCccEEe
Q 040185 74 NQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW-SFNVTKLY 151 (458)
Q Consensus 74 ~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~-l~~L~~L~ 151 (458)
.+.--...||+.|++. .+|..+..+ ..|+.+.|..|.+. .+|..+ .+..|.+++++.|++....... .--|+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEE
Confidence 3455567788888886 777777776 78888888888887 555555 6778888888888877433322 33688899
Q ss_pred ccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEe
Q 040185 152 LNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIF 231 (458)
Q Consensus 152 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 231 (458)
+++|+++ .+|..+. ..+.|.+||++.|++. .+|..+..+.+|+.|.+..|++ ..+|+.+..+ .|..||+
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l-------~~lp~El~~L-pLi~lDf 218 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL-------EDLPEELCSL-PLIRLDF 218 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh-------hhCCHHHhCC-ceeeeec
Confidence 9999988 8888888 6889999999999987 6777788899999999998884 2466666644 6788999
Q ss_pred ecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhh-CC-CCccEEEcccC
Q 040185 232 CNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGE-SM-PSLSILRLRSN 283 (458)
Q Consensus 232 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~l-~~L~~L~l~~~ 283 (458)
++|++. .+|..|..|+.|++|-|.+|.+. .-|..+.. +. .=-++|+...|
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 999988 78888999999999999999888 66666642 11 12355666655
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=3.6e-09 Score=110.75 Aligned_cols=198 Identities=20% Similarity=0.206 Sum_probs=131.6
Q ss_pred ccCcEEecCCcccccCCCCCCCCCCCCEEECcCCc--ccC---CCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEE
Q 040185 101 LALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNR--YEG---PLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDL 175 (458)
Q Consensus 101 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~--~~~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 175 (458)
...+...+-+|.+. ..+....+++|++|-+..|. +.. .....++.|++|++++|.-.+.+|..+.. +-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcc
Confidence 46677777777776 56666667788888888875 221 12344778999999988766689999984 9999999
Q ss_pred EccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCC--CCccccccCCCCCCEE
Q 040185 176 DISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHIS--GEVPPSLKNCSMMESL 253 (458)
Q Consensus 176 ~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L 253 (458)
+++++.+. .+|..+.++..|.+|++..+.. ....+.....+.+||+|.+...... ......+..+.+|+.+
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~------l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGR------LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccc------cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 99999998 8899999999999999998773 2334555666999999998776522 1222334455555555
Q ss_pred ecCCCcCCCCCchhhhhCCCCcc----EEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcc
Q 040185 254 DLGDNQLSGNIPAWIGESMPSLS----ILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSG 311 (458)
Q Consensus 254 ~l~~n~l~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 311 (458)
....... .+...+. .+.+|. .+.+.++... ..+..+..+.+|+.|.+.++.+..
T Consensus 674 s~~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 674 SITISSV--LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred eeecchh--HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 5533322 0111111 133333 2332233222 344567788889999998887753
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.5e-08 Score=103.77 Aligned_cols=109 Identities=31% Similarity=0.492 Sum_probs=85.4
Q ss_pred CCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCC
Q 040185 195 QLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPS 274 (458)
Q Consensus 195 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 274 (458)
.++.|+|++|. +.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.. +++
T Consensus 419 ~v~~L~L~~n~------L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQG------LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTS 491 (623)
T ss_pred EEEEEECCCCC------ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCC
Confidence 36778888877 66777888888888888888888888788878888888888888888888778877765 888
Q ss_pred ccEEEcccCcCCCcCCccccCC-CCCCEEEcCCCcCc
Q 040185 275 LSILRLRSNYFNGAIPPELCKL-SALHILDLSHNNLS 310 (458)
Q Consensus 275 L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~ 310 (458)
|+.|++++|.+.+.+|..+... .++..+++.+|...
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 8888888888888788776653 45667777777543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=7.7e-09 Score=71.28 Aligned_cols=61 Identities=39% Similarity=0.515 Sum_probs=39.9
Q ss_pred cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcC
Q 040185 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 356 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 416 (458)
++|++|++++|++....+..+..+++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766633335666677777777777777655556667777777777777654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=4.4e-09 Score=102.85 Aligned_cols=243 Identities=23% Similarity=0.268 Sum_probs=132.9
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEEC
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDL 131 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l 131 (458)
..++.+.++.+.+. .+...+..+++|+.|++.+|.|..... .+..+ ++|++|++++|.|+ .+...-.++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~-~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIEN-LLSSL-VNLQVLDLSFNKIT-KLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhhccc-chhhh-hcchheeccccccc-cccchhhccchhhhee
Confidence 34555555555554 233345566677777777776653322 13333 66777777777766 4444445556777777
Q ss_pred cCCcccCCCCCC-CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCC
Q 040185 132 RSNRYEGPLPLW-SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNN 210 (458)
Q Consensus 132 ~~n~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 210 (458)
.+|.++...... +.+|+.+++++|.++ .+.......+..++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i---- 220 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI---- 220 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc----
Confidence 777766433222 567777777777765 22221012467777777777776522 2233344444456666653
Q ss_pred CCcccCCcccCCcCC--CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCc
Q 040185 211 SLPGEIPDSIGSLLS--VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGA 288 (458)
Q Consensus 211 ~~~~~~~~~~~~l~~--L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 288 (458)
... ..+..+.. |+.++++++++. ..+..+..+.++..+++..+++. .+.. + ...+.+..+....+.+...
T Consensus 221 --~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~~-~-~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 221 --SKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLEG-L-ERLPKLSELWLNDNKLALS 292 (414)
T ss_pred --eec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc-cccc-c-cccchHHHhccCcchhcch
Confidence 111 11222222 677777777776 33245666777777787777766 2211 1 1144455555555544311
Q ss_pred ---CCc-cccCCCCCCEEEcCCCcCcccC
Q 040185 289 ---IPP-ELCKLSALHILDLSHNNLSGFI 313 (458)
Q Consensus 289 ---~~~-~l~~l~~L~~L~l~~n~l~~~~ 313 (458)
... .....+.++...+.++......
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hhhhccccccccccccccccccCcccccc
Confidence 111 2455667777777777666443
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.65 E-value=4.4e-10 Score=103.07 Aligned_cols=307 Identities=18% Similarity=0.141 Sum_probs=170.5
Q ss_pred CcccEEEccCCCCCCC--CCccccCCCCccEEEccCC-CcccCCChhHHhhcccCcEEecCCc-ccccCCCCCC--CCCC
Q 040185 52 FKLTFIKIRSCQPGPK--FPTWLRNQTELTTLVLNNA-RISDTIPNWFWQLDLALDELDVGSN-ELSGRIPNSL--GFRF 125 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~L~~~-~i~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~--~~~~ 125 (458)
..|+.|.++||.-.+. .......++++++|++.+| ++++..-..+...+++|++|++..| .+++..-..+ ++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3899999999976542 3344558999999999999 6888777888888899999999884 4443333222 5777
Q ss_pred CCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCcc-C-CcccccCCCCCcEEEccc
Q 040185 126 PGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNG-S-VPKSIGNLQQLLTLVISN 203 (458)
Q Consensus 126 L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~-~~~~l~~l~~L~~L~L~~ 203 (458)
|++|+++.++- +++...+.+..++..++.+..+||.-.+ . +...=..+.-+.++++.+
T Consensus 218 L~~lNlSwc~q--------------------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 218 LKYLNLSWCPQ--------------------ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred HHHhhhccCch--------------------hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 77777766542 1112222333344445555555542110 0 001112334455555556
Q ss_pred CcCCCCCCCcccCCcccCCcCCCcEEEeecccCC-CCccccc-cCCCCCCEEecCCCcC-CCCCchhhhhCCCCccEEEc
Q 040185 204 NNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHIS-GEVPPSL-KNCSMMESLDLGDNQL-SGNIPAWIGESMPSLSILRL 280 (458)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~l-~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l 280 (458)
|..+++..+- ..-.....||.|+.+++... +..-..+ ...++|+.+.+..|+. ++..-..+.+..+.|+.+++
T Consensus 278 c~~lTD~~~~----~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 278 CNQLTDEDLW----LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hccccchHHH----HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 5532221110 00122445667776665532 1111122 3457788888887753 32333344555778888888
Q ss_pred ccCcCCC--cCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCC
Q 040185 281 RSNYFNG--AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHL 358 (458)
Q Consensus 281 ~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 358 (458)
.++.... .+...-.+++.|+.+.+++|...... .+.. ....-.+...|
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--gi~~----------------------------l~~~~c~~~~l 403 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--GIRH----------------------------LSSSSCSLEGL 403 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhh--hhhh----------------------------hhhcccccccc
Confidence 7775432 22223356788888888887654221 1100 11112334566
Q ss_pred CeeeCccCc-CCCcccccccCCCCCcEEeCCCCcc-ccc-CCccccCCCCCCeeecc
Q 040185 359 GTLNLSQNH-LVGKIPTQIGKLEWLESLDLSKNKL-SGS-IPPSMVSLTFMNHLNLS 412 (458)
Q Consensus 359 ~~L~l~~n~-~~~~~~~~l~~~~~L~~L~L~~n~~-~~~-~~~~l~~l~~L~~L~l~ 412 (458)
+.+.+++++ +++...+.+..+++|+++++-+|+- +.+ +...-.++|++++..+.
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 667777775 3444455666777787777777743 322 22233457777766554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=3.3e-09 Score=103.73 Aligned_cols=247 Identities=26% Similarity=0.260 Sum_probs=151.8
Q ss_pred CCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCC
Q 040185 143 WSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGS 222 (458)
Q Consensus 143 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 222 (458)
.+..++.+.+..|.+. .....+. .+++|+.+++.+|.|.. +...+..+++|++|++++|.|.+ . ..+..
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~------i--~~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK------L--EGLST 138 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhh-cccchhhhhcchheecccccccc------c--cchhh
Confidence 3456677777777765 3222232 47788888888888873 22226678888888888888522 1 23455
Q ss_pred cCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEE
Q 040185 223 LLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHIL 302 (458)
Q Consensus 223 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 302 (458)
++.|+.|++.+|.+... ..+..++.|+.+++++|++. .+.......+.+++.+.+.+|.+... ..+..+..+..+
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLL 213 (414)
T ss_pred ccchhhheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHh
Confidence 66688888888887632 24555778888888888877 44431012377788888888776632 233334444445
Q ss_pred EcCCCcCcccCchhhccCCCCceeeccccc--ccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCC
Q 040185 303 DLSHNNLSGFIPSCVGNFSRTEYVFYSTLY--LVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE 380 (458)
Q Consensus 303 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 380 (458)
++..|.+...-+. .... +|+.+++.+|.+... +..+..+..+..|++.++.+... ..+...+
T Consensus 214 ~l~~n~i~~~~~l-------------~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~ 277 (414)
T KOG0531|consen 214 SLLDNKISKLEGL-------------NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLP 277 (414)
T ss_pred hcccccceeccCc-------------ccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccc
Confidence 6666666532110 0111 377888888887542 24456667788888888776532 2345556
Q ss_pred CCcEEeCCCCccccc---CCc-cccCCCCCCeeecccCcCCccCC
Q 040185 381 WLESLDLSKNKLSGS---IPP-SMVSLTFMNHLNLSYNNLSGEIP 421 (458)
Q Consensus 381 ~L~~L~L~~n~~~~~---~~~-~l~~l~~L~~L~l~~n~l~~~~p 421 (458)
.+..+....+.+... ... .....+.++.+.+.++++....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 278 KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 677777777766522 111 14556788888888888775444
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.5e-08 Score=68.68 Aligned_cols=61 Identities=38% Similarity=0.469 Sum_probs=49.4
Q ss_pred cccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcc
Q 040185 332 YLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 392 (458)
Q Consensus 332 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~ 392 (458)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3677888888888777777888888899999998888866667788888999999888864
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.7e-08 Score=88.85 Aligned_cols=230 Identities=22% Similarity=0.205 Sum_probs=147.6
Q ss_pred ccCCCCccEEEccCCCcccCC-ChhHHhhcccCcEEecCCccccc--CCCCCC-CCCCCCEEECcCCcccCCC---CCCC
Q 040185 72 LRNQTELTTLVLNNARISDTI-PNWFWQLDLALDELDVGSNELSG--RIPNSL-GFRFPGTVDLRSNRYEGPL---PLWS 144 (458)
Q Consensus 72 l~~~~~L~~L~L~~~~i~~~~-~~~~~~~~~~L~~L~L~~~~l~~--~~~~~~-~~~~L~~L~l~~n~~~~~~---~~~l 144 (458)
++..+.+..+.+.++.|.... ...|+..++.++++||.+|.|++ .+.... ++|.|++|+++.|++...+ |...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 334445566667677664332 23455555788888888888872 111122 6888899999888887544 4345
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccC--CcccccCC-CCCcEEEcccCcCCCCCCCcccCCcccC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGS--VPKSIGNL-QQLLTLVISNNNYMSNNSLPGEIPDSIG 221 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 221 (458)
.+|+.|-|.+..+.......+...+|.+++|.++.|..... -....... +.+++|....|...- .. ....--+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~---w~-~~~~l~r 196 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL---WL-NKNKLSR 196 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH---HH-HHHhHHh
Confidence 68999999999887777777777899999999999854311 11122222 467777777775210 00 0011113
Q ss_pred CcCCCcEEEeecccCCCCc-cccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCc------ccc
Q 040185 222 SLLSVRFLIFCNNHISGEV-PPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPP------ELC 294 (458)
Q Consensus 222 ~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------~l~ 294 (458)
.++++..+.+..|++...- -.....++.+-.|+++.+++..-......++++.|..|+++++++.+..-. .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 4678888889999876432 234556777788999999887333333445689999999999887643221 356
Q ss_pred CCCCCCEEEcC
Q 040185 295 KLSALHILDLS 305 (458)
Q Consensus 295 ~l~~L~~L~l~ 305 (458)
++++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 77888877644
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=8.5e-10 Score=96.91 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=31.5
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCc
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 205 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 205 (458)
++++++|+...++......+...+.+|+.|.+.++++.+.+...+..-.+|+.|+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 355555555555544444444445555555555555554444444455555555555554
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=6.8e-09 Score=95.44 Aligned_cols=293 Identities=17% Similarity=0.084 Sum_probs=181.1
Q ss_pred CCCEEECcCCcccCCC-----CCCCCCccEEeccCC-cCcCcCchhhhcCCCCCcEEEccCCC-CccCCccc-ccCCCCC
Q 040185 125 FPGTVDLRSNRYEGPL-----PLWSFNVTKLYLNNN-LFSGPIPRDFGQKIPFLTDLDISFNS-LNGSVPKS-IGNLQQL 196 (458)
Q Consensus 125 ~L~~L~l~~n~~~~~~-----~~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~-l~~l~~L 196 (458)
.|+.|.+++++-.+.- ....+++++|++.+| ++++.....+...+++|+++++..|. ++...... ...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 6777777776543322 222568888888887 45656666777788999999998864 44333332 2468899
Q ss_pred cEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccc----cCCCCCCEEecCCCc-CCCCCchhhhhC
Q 040185 197 LTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSL----KNCSMMESLDLGDNQ-LSGNIPAWIGES 271 (458)
Q Consensus 197 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 271 (458)
+++++++|+-..++.+. ..+.....++.+...+|.-.+ .+.+ +.+..+..+++..|. +++.-...+..+
T Consensus 219 ~~lNlSwc~qi~~~gv~----~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQ----ALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhcCcch----HHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 99999999854432222 234455567777666664221 1122 233446667766663 443333344455
Q ss_pred CCCccEEEcccCcCC-CcCCccc-cCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCcc--
Q 040185 272 MPSLSILRLRSNYFN-GAIPPEL-CKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSRE-- 347 (458)
Q Consensus 272 l~~L~~L~l~~~~~~-~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-- 347 (458)
+..|+.+..+++... +.....+ .+..+|+.+-+++|+--+. ..|.. .-...++|+.+++..+.....
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd--~~ft~-------l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD--RGFTM-------LGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh--hhhhh-------hhcCChhhhhhcccccceehhhh
Confidence 778999999887542 2222233 4678899999998863111 11111 123567899999988865322
Q ss_pred CChhhccccCCCeeeCccCc-CCCcccccc----cCCCCCcEEeCCCCcccc-cCCccccCCCCCCeeecccCcCCcc--
Q 040185 348 MPVELTRLIHLGTLNLSQNH-LVGKIPTQI----GKLEWLESLDLSKNKLSG-SIPPSMVSLTFMNHLNLSYNNLSGE-- 419 (458)
Q Consensus 348 ~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l----~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~-- 419 (458)
+...-.+++.|+.+.++.|. +++.....+ ..+..|+.+.+++|+... ...+.+..++.|+.+++-+|.-...
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 22233468999999999885 444322222 346789999999997663 3556788899999999999876432
Q ss_pred CCCC-CCCCCCCCC
Q 040185 420 IPKV-NQFQSLKDP 432 (458)
Q Consensus 420 ~p~~-~~~~~l~~~ 432 (458)
+..+ .+++++++.
T Consensus 444 i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 444 ISRFATHLPNIKVH 457 (483)
T ss_pred hHHHHhhCccceeh
Confidence 2222 345555543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=1.5e-07 Score=81.92 Aligned_cols=234 Identities=18% Similarity=0.156 Sum_probs=119.4
Q ss_pred CccEEeccCCcCcCcCchhhhc---CCCCCcEEEccCCCCc---cC-------CcccccCCCCCcEEEcccCcCCCCCCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQ---KIPFLTDLDISFNSLN---GS-------VPKSIGNLQQLLTLVISNNNYMSNNSL 212 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~i~---~~-------~~~~l~~l~~L~~L~L~~~~~~~~~~~ 212 (458)
.+.+++|++|.+.....+.+.. .-.+|+..+++.-... +. ..+++..||+|++++||+|. +
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA------f 104 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA------F 104 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc------c
Confidence 4555556655554333333222 2344555555433211 11 12344567777777777777 3
Q ss_pred cccCCcc----cCCcCCCcEEEeecccCCCCcccc-------------ccCCCCCCEEecCCCcCCCCCchhhh----hC
Q 040185 213 PGEIPDS----IGSLLSVRFLIFCNNHISGEVPPS-------------LKNCSMMESLDLGDNQLSGNIPAWIG----ES 271 (458)
Q Consensus 213 ~~~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~-------------l~~l~~L~~L~l~~n~l~~~~~~~~~----~~ 271 (458)
....|+. +++-..|.+|.+++|.+....... .++-+.|+.+....|++. ..+.... +.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence 3333332 344567777777777765322211 123466777887777776 5554332 21
Q ss_pred CCCccEEEcccCcCCCcCC-----ccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCc
Q 040185 272 MPSLSILRLRSNYFNGAIP-----PELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSR 346 (458)
Q Consensus 272 l~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 346 (458)
-..|+++.+..|.+..... ..+..+.+|+.||+..|.++-... .
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS-------------------------------~ 232 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS-------------------------------R 232 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH-------------------------------H
Confidence 2467777777766542211 122334455555555554442111 1
Q ss_pred cCChhhccccCCCeeeCccCcCCCcccccc------cCCCCCcEEeCCCCcccccCCc-----cc--cCCCCCCeeeccc
Q 040185 347 EMPVELTRLIHLGTLNLSQNHLVGKIPTQI------GKLEWLESLDLSKNKLSGSIPP-----SM--VSLTFMNHLNLSY 413 (458)
Q Consensus 347 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l------~~~~~L~~L~L~~n~~~~~~~~-----~l--~~l~~L~~L~l~~ 413 (458)
.....++.++.|++|.+.+|-++......+ ...|+|..|-..+|.+.+.+.. .+ ..+|-|..|.+.|
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 123344455667777777776554333222 1256677777777755432111 11 2356677777777
Q ss_pred CcCC
Q 040185 414 NNLS 417 (458)
Q Consensus 414 n~l~ 417 (458)
|.+.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 7764
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2.5e-08 Score=97.77 Aligned_cols=193 Identities=24% Similarity=0.236 Sum_probs=87.1
Q ss_pred cccEEEccCCCCCCCC-CccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccc----------cCCCCCC
Q 040185 53 KLTFIKIRSCQPGPKF-PTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELS----------GRIPNSL 121 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~----------~~~~~~~ 121 (458)
+++.+++-...-.+.. |-.+..|+.||+|.+.+|.++- ...+..+-..|++|...+. ++ +.+....
T Consensus 85 kt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 85 KTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP 161 (1096)
T ss_pred hheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch
Confidence 3444444443332222 4456677778888887777742 2223333234555544321 11 1111111
Q ss_pred CCCCCCEEECcCCcccCC--CCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCccc-ccCCCCCcE
Q 040185 122 GFRFPGTVDLRSNRYEGP--LPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKS-IGNLQQLLT 198 (458)
Q Consensus 122 ~~~~L~~L~l~~n~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~ 198 (458)
--.+|.+.+.++|++... .-..++.++.|+|++|+++ ... .+. .+++|++||+++|.+. .+|.. ...+ +|..
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQL 236 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhh-hhee
Confidence 112455555555554421 1122445566666666654 222 222 3566666666666554 33321 1122 2555
Q ss_pred EEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCc-cccccCCCCCCEEecCCCcCC
Q 040185 199 LVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEV-PPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 199 L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 261 (458)
|.+++|.+ +. --.+.++.+|+.||+++|-+.+.. -..+..+..|+.|++.+|.+.
T Consensus 237 L~lrnN~l------~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNAL------TT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHH------Hh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66655552 11 112344555555666655544211 012233445555555555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=2.4e-07 Score=81.74 Aligned_cols=198 Identities=17% Similarity=0.120 Sum_probs=85.6
Q ss_pred CcccEEEccCCCCCC--CCCccccCCCCccEEEccCCCcccCCChhH-HhhcccCcEEecCCcccccCCC-CCC-CCCCC
Q 040185 52 FKLTFIKIRSCQPGP--KFPTWLRNQTELTTLVLNNARISDTIPNWF-WQLDLALDELDVGSNELSGRIP-NSL-GFRFP 126 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~-~~~-~~~~L 126 (458)
..+++++|.+|.+.+ .+...+.+++.|++|+|+.|.+...+ +.+ ... .+|++|.|.+..+.=.-. ..+ .+|.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPL-KNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccc-cceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 356666666665542 12233445666666666665554221 111 122 456666665555441111 111 35555
Q ss_pred CEEECcCCcccC------CCCCCCCCccEEeccCCcCcC-cCchhhhcCCCCCcEEEccCCCCccC-CcccccCCCCCcE
Q 040185 127 GTVDLRSNRYEG------PLPLWSFNVTKLYLNNNLFSG-PIPRDFGQKIPFLTDLDISFNSLNGS-VPKSIGNLQQLLT 198 (458)
Q Consensus 127 ~~L~l~~n~~~~------~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~ 198 (458)
+++.++.|.+.. ....+.+.+++|+...|...- .--..+...+|++..+-+..|.+... .......++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 555555553221 011122244445444443210 00011122345555555555544321 1222333444445
Q ss_pred EEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCcc------ccccCCCCCCEEecC
Q 040185 199 LVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVP------PSLKNCSMMESLDLG 256 (458)
Q Consensus 199 L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~------~~l~~l~~L~~L~l~ 256 (458)
|+|+.+++-+. ...+.+.+++.|+.|.++.+++.+.+- -.++.+++++.|+=+
T Consensus 229 LnL~~~~idsw-----asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSW-----ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccH-----HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 55555553221 111334455555555555555443211 124556666666543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=7.7e-09 Score=101.28 Aligned_cols=127 Identities=28% Similarity=0.292 Sum_probs=63.8
Q ss_pred CCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeec
Q 040185 249 MMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY 328 (458)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 328 (458)
+|...+.+.|.+. .....+.- ++.++.|+|+.|+++.. ..+..+++|++||+++|.+..+ |. +. -
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLql-l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~v-p~-l~---------~ 229 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQL-LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHV-PQ-LS---------M 229 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHH-HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccc-cc-cc---------h
Confidence 4555666666665 44443332 56666677777766643 2566666677777776666521 11 00 0
Q ss_pred ccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcc-cccccCCCCCcEEeCCCCccc
Q 040185 329 STLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKI-PTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 329 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~L~~n~~~ 393 (458)
..+ .|+.|.+++|.++. ...+.++.+|+.|++++|-+.+-- ..-+..+..|..|+|.||.+.
T Consensus 230 ~gc-~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 230 VGC-KLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhh-hheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 011 25555666655532 123455555566666655443210 011233344555556665554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=8.1e-08 Score=83.58 Aligned_cols=210 Identities=20% Similarity=0.137 Sum_probs=102.9
Q ss_pred CCCCccEEEccCCCcccCCChhHHhhc---ccCcEEecCCccccc----CC--------CCCCCCCCCCEEECcCCcccC
Q 040185 74 NQTELTTLVLNNARISDTIPNWFWQLD---LALDELDVGSNELSG----RI--------PNSLGFRFPGTVDLRSNRYEG 138 (458)
Q Consensus 74 ~~~~L~~L~L~~~~i~~~~~~~~~~~~---~~L~~L~L~~~~l~~----~~--------~~~~~~~~L~~L~l~~n~~~~ 138 (458)
-+..++.++||+|.|.......+++.. .+|+..+++.- +++ .+ +...+||+|+.+++++|.|..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 466677777777776554444444332 34555544431 111 11 112367788888888877765
Q ss_pred CCCCC-------CCCccEEeccCCcCcCcCchhhh------------cCCCCCcEEEccCCCCccCCcc-----cccCCC
Q 040185 139 PLPLW-------SFNVTKLYLNNNLFSGPIPRDFG------------QKIPFLTDLDISFNSLNGSVPK-----SIGNLQ 194 (458)
Q Consensus 139 ~~~~~-------l~~L~~L~L~~~~~~~~~~~~~~------------~~l~~L~~L~l~~~~i~~~~~~-----~l~~l~ 194 (458)
..|.. -..|++|.+++|.+....-..++ ..-|.|+.++...|++. ..+. .+....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 54433 22566777766654311111111 02356677776666654 2221 122334
Q ss_pred CCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCC----ccccccCCCCCCEEecCCCcCCCCCchhhhh
Q 040185 195 QLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGE----VPPSLKNCSMMESLDLGDNQLSGNIPAWIGE 270 (458)
Q Consensus 195 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 270 (458)
+|+++.+..|.|-.. .+.......+..+.+|+.|+++.|.++.. +...+...+.|+.|.+.+|-+.......+.+
T Consensus 186 ~lk~vki~qNgIrpe-gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 186 NLKEVKIQQNGIRPE-GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred CceeEEeeecCcCcc-hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 666666666653100 00000011123345666777777666532 2223344455666667666665443333322
Q ss_pred -----CCCCccEEEcccCcCC
Q 040185 271 -----SMPSLSILRLRSNYFN 286 (458)
Q Consensus 271 -----~l~~L~~L~l~~~~~~ 286 (458)
..|+|+.|....|...
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HhhhhcCCCccccccchhhhc
Confidence 1355566655555443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=7.1e-07 Score=91.36 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=75.1
Q ss_pred CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCc
Q 040185 144 SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSL 223 (458)
Q Consensus 144 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 223 (458)
++.|+.|.+.+-.+...-...++.++|+|..||+|++.++.. ..++++++|+.|.+.+-.+.+.+ .-..+..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~-----~l~~LF~L 219 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ-----DLIDLFNL 219 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh-----hHHHHhcc
Confidence 455555555554443222334445677777777777777632 45667777777777665532211 11234456
Q ss_pred CCCcEEEeecccCCCCc--c----ccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcc
Q 040185 224 LSVRFLIFCNNHISGEV--P----PSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLR 281 (458)
Q Consensus 224 ~~L~~L~l~~~~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 281 (458)
++|+.||+|........ . +.-..+|+|+.||.+++.+...+-+.+.+.-++|+.+..-
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 77777777765543221 1 1123467888888888877765555555556666665543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=1.1e-06 Score=89.89 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=67.9
Q ss_pred ccccceeeccCCcchhhccccccCCCCC-CCCCcccEEEccCCCCCC-CCCccccCCCCccEEEccCCCcccCCChhHHh
Q 040185 21 LISATRINKSDNSSVISEFSNLGLDSHW-IPPFKLTFIKIRSCQPGP-KFPTWLRNQTELTTLVLNNARISDTIPNWFWQ 98 (458)
Q Consensus 21 ~~~l~~l~~s~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~ 98 (458)
-++|+.||+++.......| +..+ ..+|.|++|.+++-.+.. .+....+++++|+.||+|++++++. ..++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W-----~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGW-----PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhccH-----HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 4567777777754332222 0011 235688888888766642 3344455788888888888887643 45666
Q ss_pred hcccCcEEecCCccccc--CCCCCCCCCCCCEEECcCCccc
Q 040185 99 LDLALDELDVGSNELSG--RIPNSLGFRFPGTVDLRSNRYE 137 (458)
Q Consensus 99 ~~~~L~~L~L~~~~l~~--~~~~~~~~~~L~~L~l~~n~~~ 137 (458)
+ ++|++|.+.+-.+.. .+...+.+++|+.||++..+..
T Consensus 194 L-knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 194 L-KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred c-ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 6 788888887766652 2334557788888888765543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=7.1e-07 Score=69.76 Aligned_cols=82 Identities=24% Similarity=0.374 Sum_probs=47.0
Q ss_pred cEEEeecccCCC--CccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEc
Q 040185 227 RFLIFCNNHISG--EVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDL 304 (458)
Q Consensus 227 ~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 304 (458)
..++++.|.+.. ..+..+.....|...++++|.+. .+|..+...++.+..+++.+|.+. .+|..+..++.|+.+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 345555665441 11222334445555666666666 666666555666666666666666 44555666666666666
Q ss_pred CCCcCc
Q 040185 305 SHNNLS 310 (458)
Q Consensus 305 ~~n~l~ 310 (458)
+.|.+.
T Consensus 108 ~~N~l~ 113 (177)
T KOG4579|consen 108 RFNPLN 113 (177)
T ss_pred ccCccc
Confidence 666554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=7.1e-06 Score=51.72 Aligned_cols=36 Identities=44% Similarity=0.702 Sum_probs=16.1
Q ss_pred CCcEEeCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 381 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555544 33333444555555555555444
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=0.00016 Score=68.72 Aligned_cols=88 Identities=20% Similarity=0.316 Sum_probs=39.7
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCc-ccccCCCCCCCCCCCCEEE
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSN-ELSGRIPNSLGFRFPGTVD 130 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~L~~L~ 130 (458)
.++++|++++|.+. .+|. --.+|++|.+++|.--..+|..+ +++|++|++++| .+. .+| ..|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP-----~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP-----ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc-----cccceEE
Confidence 45666666666544 3331 11246666666553222444433 245666666655 322 222 2355555
Q ss_pred CcCCcccCCCCCCCCCccEEecc
Q 040185 131 LRSNRYEGPLPLWSFNVTKLYLN 153 (458)
Q Consensus 131 l~~n~~~~~~~~~l~~L~~L~L~ 153 (458)
+..+... .++..+.+|++|.+.
T Consensus 119 L~~n~~~-~L~~LPssLk~L~I~ 140 (426)
T PRK15386 119 IKGSATD-SIKNVPNGLTSLSIN 140 (426)
T ss_pred eCCCCCc-ccccCcchHhheecc
Confidence 5433322 122233355555553
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=1.3e-06 Score=68.25 Aligned_cols=130 Identities=27% Similarity=0.293 Sum_probs=66.7
Q ss_pred ccEEEcccCcCCCcCCc---cccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChh
Q 040185 275 LSILRLRSNYFNGAIPP---ELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVE 351 (458)
Q Consensus 275 L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 351 (458)
+..+++++|.+. .+++ .+.....|...++++|.+....+. |. ..++..+.+++++|.+.+ +|..
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~k-ft----------~kf~t~t~lNl~~neisd-vPeE 95 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKK-FT----------IKFPTATTLNLANNEISD-VPEE 95 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHH-Hh----------hccchhhhhhcchhhhhh-chHH
Confidence 444555555443 1222 233444555566666666532222 11 123345556666666633 4445
Q ss_pred hccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCcc
Q 040185 352 LTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGE 419 (458)
Q Consensus 352 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 419 (458)
+..++.|+.|+++.|++. ..|..+..+.++..|+..+|... .++-.+..-...-..++.++++.+.
T Consensus 96 ~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence 666677777777777666 55666666666666666666665 3332222222233444455555443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=6.4e-05 Score=63.10 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=63.1
Q ss_pred cccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCccccc--CCCCCCCCCCCCEEE
Q 040185 53 KLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSG--RIPNSLGFRFPGTVD 130 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~~L~~L~ 130 (458)
+...++|++|.+.. ...|-.++.|.+|.|.+|.|+.+.|. +..++++|..|.|.+|.+.. .+.....+|+|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 77888999988852 23366788999999999999866665 66666889999999998872 334444788888888
Q ss_pred CcCCcccC
Q 040185 131 LRSNRYEG 138 (458)
Q Consensus 131 l~~n~~~~ 138 (458)
+-+|+++.
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 88887764
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00017 Score=68.46 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=25.9
Q ss_pred cCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCC
Q 040185 191 GNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDN 258 (458)
Q Consensus 191 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 258 (458)
..+.++++|++++|.+ . .+| .+ ..+|+.|.+++|.-...+|+.+ .++|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L------~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDI------E-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCC------c-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3456666666666652 1 222 11 1245666665543222334322 235555555555
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.9e-05 Score=48.89 Aligned_cols=37 Identities=38% Similarity=0.633 Sum_probs=27.1
Q ss_pred cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccc
Q 040185 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 356 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 393 (458)
++|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36778888888887 56666788888888888888777
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=0.00012 Score=61.45 Aligned_cols=110 Identities=22% Similarity=0.190 Sum_probs=56.5
Q ss_pred cCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCC
Q 040185 102 ALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNS 181 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 181 (458)
....+||+.|.+. ....+-++++|.+|.+++|+|+. +...+...+++|+.|.+.+|.
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~----------------------I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITR----------------------IDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCccee----------------------eccchhhhccccceEEecCcc
Confidence 4455555555544 23322244455555555555443 333333445666666666666
Q ss_pred CccCC-cccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCC
Q 040185 182 LNGSV-PKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHIS 237 (458)
Q Consensus 182 i~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 237 (458)
|.... ...+..+|.|++|.+-+|++.... ..-...+..+++|+.||.++-...
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~---~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKK---NYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhccc---CceeEEEEecCcceEeehhhhhHH
Confidence 54211 123456677777777777632211 112234566777777777765543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=2.5e-05 Score=78.35 Aligned_cols=244 Identities=18% Similarity=0.115 Sum_probs=126.4
Q ss_pred chhhhcCCCCCcEEEccCCC-CccC-CcccccCCCCCcEEEcccC-cCCCCCCCcccCCcccCCcCCCcEEEeeccc-CC
Q 040185 162 PRDFGQKIPFLTDLDISFNS-LNGS-VPKSIGNLQQLLTLVISNN-NYMSNNSLPGEIPDSIGSLLSVRFLIFCNNH-IS 237 (458)
Q Consensus 162 ~~~~~~~l~~L~~L~l~~~~-i~~~-~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~ 237 (458)
...+...++.|+.+.+.++. +... .......++.|+.|+++++ ..... ...........+.+|+.|+++++. ++
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL--SPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc--chhHhhhhhhhcCCcCccchhhhhccC
Confidence 33444446788888888774 3321 2234456788888888763 21000 000011122335678888888877 66
Q ss_pred CCccccccC-CCCCCEEecCCCc-CCCCCchhhhhCCCCccEEEcccCcCCC--cCCccccCCCCCCEEEcCCCc----C
Q 040185 238 GEVPPSLKN-CSMMESLDLGDNQ-LSGNIPAWIGESMPSLSILRLRSNYFNG--AIPPELCKLSALHILDLSHNN----L 309 (458)
Q Consensus 238 ~~~~~~l~~-l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~----l 309 (458)
+..-..+.. +++|+.|.+..|. +++..-..+...+++|++|+++.|.... .+......+++++.+.+.... +
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence 544444443 6788888877776 6666666666678888888888775431 122223446666655543332 1
Q ss_pred cccCchhhccCC--CCceeecccccccCEEEcccCcCCccC-ChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEe
Q 040185 310 SGFIPSCVGNFS--RTEYVFYSTLYLVNLMDLSSNNLSREM-PVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 386 (458)
Q Consensus 310 ~~~~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 386 (458)
+...-....... .........++.++.+.+..+...... ...+.+|+.|. ..+. .......+++.|+
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~---------~~~~~~~~l~~L~ 407 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE---------LRLCRSDSLRVLN 407 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH---------HHhccCCccceEe
Confidence 111000111111 223334455666666666665533222 12333444441 1111 1112222378888
Q ss_pred CCCCccccc-CCccccC-CCCCCeeecccCcCC
Q 040185 387 LSKNKLSGS-IPPSMVS-LTFMNHLNLSYNNLS 417 (458)
Q Consensus 387 L~~n~~~~~-~~~~l~~-l~~L~~L~l~~n~l~ 417 (458)
++.|..... ....... +..+..+++.+++..
T Consensus 408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cccCccccccchHHHhhhhhccccCCccCcccc
Confidence 888865422 2222222 566777888877664
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00041 Score=60.84 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCCCcEEEccCCCCccC-CcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecc
Q 040185 169 IPFLTDLDISFNSLNGS-VPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNN 234 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 234 (458)
+|+|+++++++|+|... -...+..+.+|..|++.+|.... ....-...|.-+++|.+|+-...
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc---cccHHHHHHHHhhhhcccccccc
Confidence 46666666666665521 11223455566666666666322 11111123344566666654433
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.88 E-value=0.00012 Score=73.31 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=24.6
Q ss_pred CccEEeccCCc-CcCcCchhhhcCCCCCcEEEccCCC-CccCCccc-ccCCCCCcEEEcccCc
Q 040185 146 NVTKLYLNNNL-FSGPIPRDFGQKIPFLTDLDISFNS-LNGSVPKS-IGNLQQLLTLVISNNN 205 (458)
Q Consensus 146 ~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~-l~~l~~L~~L~L~~~~ 205 (458)
+|+.|+++++. +++.....+...+++|++|.+.+|. +++..... ...++.|++|++++|.
T Consensus 244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 44444444444 3333333333334455555544443 33221111 1234445555555444
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.80 E-value=0.0036 Score=50.14 Aligned_cols=37 Identities=8% Similarity=0.243 Sum_probs=13.7
Q ss_pred hhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCC
Q 040185 351 ELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 389 (458)
Q Consensus 351 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~ 389 (458)
.+..+++|+.+.+..+ +.......+..+ +|+.+.+.+
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 3444555555555433 222222334444 555555554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.78 E-value=0.0039 Score=49.98 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=12.0
Q ss_pred CCCCCcEEEccCCCCccCCcccccCCCCCcEEEccc
Q 040185 168 KIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISN 203 (458)
Q Consensus 168 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~ 203 (458)
++++|+.+.+.. .+......+|..+.+|+.+.+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 344555555543 23223333444444555555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00011 Score=64.68 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=50.1
Q ss_pred ccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCccc--ccccCCCCCcEEeCCCCcccccCCc-----cccCC
Q 040185 331 LYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIP--TQIGKLEWLESLDLSKNKLSGSIPP-----SMVSL 403 (458)
Q Consensus 331 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~L~~n~~~~~~~~-----~l~~l 403 (458)
++.|+.|.|+-|.++.. ..+..|+.|++|+|..|.|.+ +. ..+.++|+|+.|+|..|...+.-+. .+..+
T Consensus 40 Mp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred cccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 44566666666666433 346678888888888887763 22 3456788888888888877654332 24446
Q ss_pred CCCCeee
Q 040185 404 TFMNHLN 410 (458)
Q Consensus 404 ~~L~~L~ 410 (458)
|+|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 7777764
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0025 Score=56.06 Aligned_cols=110 Identities=22% Similarity=0.211 Sum_probs=68.6
Q ss_pred cccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccC--cCCccCChhhccccCCCeeeCccCcCC
Q 040185 292 ELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSN--NLSREMPVELTRLIHLGTLNLSQNHLV 369 (458)
Q Consensus 292 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~L~~L~l~~n~~~ 369 (458)
.......|+.+++.+..+++. . .+..+++|+.|.++.| ++...+......+++|+++++++|++.
T Consensus 38 l~d~~~~le~ls~~n~gltt~-----~--------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL-----T--------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccccchhhhhhhccceeec-----c--------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344556677777776666522 1 2335668888888888 555555555566788888888888876
Q ss_pred C-cccccccCCCCCcEEeCCCCcccccC-C--ccccCCCCCCeeecccC
Q 040185 370 G-KIPTQIGKLEWLESLDLSKNKLSGSI-P--PSMVSLTFMNHLNLSYN 414 (458)
Q Consensus 370 ~-~~~~~l~~~~~L~~L~L~~n~~~~~~-~--~~l~~l~~L~~L~l~~n 414 (458)
. .....+..+.+|..|++.+|..+... . ..+.-+++|++|+--..
T Consensus 105 ~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 105 DLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 3 11122345667888888888776421 1 22444677777655443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.68 E-value=8.2e-05 Score=73.20 Aligned_cols=60 Identities=33% Similarity=0.435 Sum_probs=29.9
Q ss_pred CCeeeCccCcCCCc----ccccccCC-CCCcEEeCCCCccccc----CCccccCCCCCCeeecccCcCC
Q 040185 358 LGTLNLSQNHLVGK----IPTQIGKL-EWLESLDLSKNKLSGS----IPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 358 L~~L~l~~n~~~~~----~~~~l~~~-~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
+.+|++++|.+.+. ....+..+ ..+++++++.|+++.. +.+.+..+++++++.++.|++.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 45555555555432 11222333 4456666666666543 2233444556666666666554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.001 Score=58.87 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=57.2
Q ss_pred cccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC---CCCCCCEE
Q 040185 53 KLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL---GFRFPGTV 129 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~---~~~~L~~L 129 (458)
+.+.|+.-||.+.+ -....+|+.|++|.|+=|+|+...| +..+ ++|++|.|..|.|. .+.... ++|+|++|
T Consensus 20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~p--l~rC-trLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLAP--LQRC-TRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccH--HHHHHhcccceeEEeeccccccchh--HHHH-HHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 56677777777764 2334578888888888888864333 5555 78888888888877 444433 67788888
Q ss_pred ECcCCcccCCCC
Q 040185 130 DLRSNRYEGPLP 141 (458)
Q Consensus 130 ~l~~n~~~~~~~ 141 (458)
-|..|+-.+..+
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 888777665543
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.87 E-value=7.8e-05 Score=73.32 Aligned_cols=182 Identities=23% Similarity=0.235 Sum_probs=105.5
Q ss_pred CcEEecCCcccccCCCCCC-----CCCCCCEEECcCCcccCCCCCC-------C-CCccEEeccCCcCcCcC----chhh
Q 040185 103 LDELDVGSNELSGRIPNSL-----GFRFPGTVDLRSNRYEGPLPLW-------S-FNVTKLYLNNNLFSGPI----PRDF 165 (458)
Q Consensus 103 L~~L~L~~~~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~-------l-~~L~~L~L~~~~~~~~~----~~~~ 165 (458)
+.++.|.+|.+.......+ ..++|+.|++++|.+.+..... . ..+++|.+..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7888999998885544433 4678888999998887432111 1 35677777778776533 3334
Q ss_pred hcCCCCCcEEEccCCCCcc----CCccccc----CCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC-CcEEEeecccC
Q 040185 166 GQKIPFLTDLDISFNSLNG----SVPKSIG----NLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS-VRFLIFCNNHI 236 (458)
Q Consensus 166 ~~~l~~L~~L~l~~~~i~~----~~~~~l~----~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l 236 (458)
.+ .+.+++++++.|.+.. ..+..+. ...++++|++++|.+.+.+.. .....+...+. ++.|++..|.+
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--LLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--HHHHHHhccchhhHHHHHHhcCc
Confidence 33 6778888888887641 1222233 456778888877773211000 11122233333 55577777776
Q ss_pred CCC----ccccccCC-CCCCEEecCCCcCCCCCchhhhh---CCCCccEEEcccCcCCC
Q 040185 237 SGE----VPPSLKNC-SMMESLDLGDNQLSGNIPAWIGE---SMPSLSILRLRSNYFNG 287 (458)
Q Consensus 237 ~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~---~l~~L~~L~l~~~~~~~ 287 (458)
.+. ....+..+ ..++.++++.|.+++.....+.+ .++.++.+.+..|.+..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 543 12233444 56677777777777544433322 24567777777776653
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.0034 Score=53.03 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=50.6
Q ss_pred cCEEEcccCcCCccCChhhccccCCCeeeCccCcC-CCccccccc-CCCCCcEEeCCCC-cccccCCccccCCCCCCeee
Q 040185 334 VNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHL-VGKIPTQIG-KLEWLESLDLSKN-KLSGSIPPSMVSLTFMNHLN 410 (458)
Q Consensus 334 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~l~-~~~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~ 410 (458)
++.++.++..+..+..+.+..++.++.|.+.+|.- .+...+.+. -.++|+.|+|++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555555555555555666667777777777742 221112222 3467888888877 66655566677777787777
Q ss_pred cccCcC
Q 040185 411 LSYNNL 416 (458)
Q Consensus 411 l~~n~l 416 (458)
+.+=+.
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 776544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.02 Score=29.82 Aligned_cols=12 Identities=67% Similarity=0.822 Sum_probs=5.6
Q ss_pred CcEEeCCCCccc
Q 040185 382 LESLDLSKNKLS 393 (458)
Q Consensus 382 L~~L~L~~n~~~ 393 (458)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.61 E-value=0.022 Score=30.36 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=13.9
Q ss_pred CCCccEEEccCCCcccCCChhHH
Q 040185 75 QTELTTLVLNNARISDTIPNWFW 97 (458)
Q Consensus 75 ~~~L~~L~L~~~~i~~~~~~~~~ 97 (458)
+++|++|+|++|+|++..+.+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46778888888887766655543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.0073 Score=51.08 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=43.1
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCC-CcccCCChhHHhhcccCcEEecCCc-ccccCCCCC-CCCCCCCE
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNA-RISDTIPNWFWQLDLALDELDVGSN-ELSGRIPNS-LGFRFPGT 128 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~-~i~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~L~~ 128 (458)
..++.++-+++.+...=..-+..++.++.|.+.+| ++.+-..+.+.+..++|+.|++++| +|++....- .++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35566666666554333344556666666666666 3444444445555566666666654 344222211 14555555
Q ss_pred EECcC
Q 040185 129 VDLRS 133 (458)
Q Consensus 129 L~l~~ 133 (458)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55543
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.73 E-value=0.045 Score=28.46 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=11.3
Q ss_pred CCCeeeCccCcCCCccccccc
Q 040185 357 HLGTLNLSQNHLVGKIPTQIG 377 (458)
Q Consensus 357 ~L~~L~l~~n~~~~~~~~~l~ 377 (458)
+|++|++++|.++ .+|..++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666665 5555443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.39 E-value=0.27 Score=23.66 Aligned_cols=9 Identities=44% Similarity=0.482 Sum_probs=3.0
Q ss_pred cEEEeeccc
Q 040185 227 RFLIFCNNH 235 (458)
Q Consensus 227 ~~L~l~~~~ 235 (458)
+.|++++|.
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 79
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=89.32 E-value=3.1 Score=40.35 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCeeeCccCcCCCccccc---ccCCCCCcEEeCCCCcccc----cCCccccCCCCCCeeecccCc
Q 040185 358 LGTLNLSQNHLVGKIPTQ---IGKLEWLESLDLSKNKLSG----SIPPSMVSLTFMNHLNLSYNN 415 (458)
Q Consensus 358 L~~L~l~~n~~~~~~~~~---l~~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~ 415 (458)
+.++.++.|......... ...-+.+..|++++|.... .+|+.+....+++.+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 455555555554211111 1223456666666665543 234444444455555555443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.63 E-value=0.8 Score=24.70 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=11.1
Q ss_pred CCCCEEecCCCcCCCCCchhh
Q 040185 248 SMMESLDLGDNQLSGNIPAWI 268 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~ 268 (458)
++|+.|++++|++. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45556666666655 555544
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.63 E-value=0.8 Score=24.70 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=11.1
Q ss_pred CCCCEEecCCCcCCCCCchhh
Q 040185 248 SMMESLDLGDNQLSGNIPAWI 268 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~ 268 (458)
++|+.|++++|++. .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45556666666655 555544
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.74 E-value=0.49 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCccEEEccCCCcccCCChhHHh
Q 040185 76 TELTTLVLNNARISDTIPNWFWQ 98 (458)
Q Consensus 76 ~~L~~L~L~~~~i~~~~~~~~~~ 98 (458)
++|++|+|++|.+++.....++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 56778888888777655555543
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.30 E-value=0.63 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=12.6
Q ss_pred CCCccEEEccCC-CcccCCCh
Q 040185 75 QTELTTLVLNNA-RISDTIPN 94 (458)
Q Consensus 75 ~~~L~~L~L~~~-~i~~~~~~ 94 (458)
+++|++|+|++| ++++....
T Consensus 1 c~~L~~L~l~~C~~itD~gl~ 21 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQ 21 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHH
Confidence 466777777777 46654433
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.96 E-value=0.075 Score=46.16 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=58.9
Q ss_pred CCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCC
Q 040185 48 WIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFP 126 (458)
Q Consensus 48 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L 126 (458)
+....+.+.|+++.+++. ..-..++-++.+..|+++.+.+. ..|..+.+. ..++++++.+|..+ ..|..+ ..+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQ-RETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHH-HHHHHHHhhccchh-hCCccccccCCc
Confidence 333456777777777665 33444566677778888877774 677777776 77788888777776 455544 67888
Q ss_pred CEEECcCCccc
Q 040185 127 GTVDLRSNRYE 137 (458)
Q Consensus 127 ~~L~l~~n~~~ 137 (458)
++++...+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888777654
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.25 E-value=2.1 Score=42.24 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCCCccEEEccCCCcccC-CChhHHhhcccCcEEecCCc--ccccCCCC--CCCCCCCCEEECcCCccc
Q 040185 74 NQTELTTLVLNNARISDT-IPNWFWQLDLALDELDVGSN--ELSGRIPN--SLGFRFPGTVDLRSNRYE 137 (458)
Q Consensus 74 ~~~~L~~L~L~~~~i~~~-~~~~~~~~~~~L~~L~L~~~--~l~~~~~~--~~~~~~L~~L~l~~n~~~ 137 (458)
+.+.+..+.|++|++... ....+....++|..|+|++| .+. .... -++...|++|-+.+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccc
Confidence 455556666666654311 11223333456666666665 222 1111 113344555555555554
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.20 E-value=0.14 Score=44.60 Aligned_cols=85 Identities=22% Similarity=0.215 Sum_probs=59.0
Q ss_pred cccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCee
Q 040185 330 TLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 409 (458)
Q Consensus 330 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 409 (458)
.....+.||++.|++-. .-..+..++.|..|+++.|++. ..|..+.....+..+++.+|... -.|.++...|.++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 45567777777776632 2234555667777788877776 56666777777777777777766 667777778888888
Q ss_pred ecccCcCC
Q 040185 410 NLSYNNLS 417 (458)
Q Consensus 410 ~l~~n~l~ 417 (458)
+.-++++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88777754
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.60 E-value=7.8 Score=21.04 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=8.9
Q ss_pred CCCcEEEccCCCCc
Q 040185 170 PFLTDLDISFNSLN 183 (458)
Q Consensus 170 ~~L~~L~l~~~~i~ 183 (458)
++|++|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.21 E-value=8.4 Score=20.91 Aligned_cols=18 Identities=28% Similarity=0.687 Sum_probs=11.1
Q ss_pred CCCCEEecCCCcCCCCCch
Q 040185 248 SMMESLDLGDNQLSGNIPA 266 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~ 266 (458)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35666667777666 5554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.29 E-value=8.1 Score=38.39 Aligned_cols=66 Identities=27% Similarity=0.183 Sum_probs=35.1
Q ss_pred cccccCEEEcccCcCCcc--CChhhccccCCCeeeCccCcCCCcccccccC--CCCCcEEeCCCCccccc
Q 040185 330 TLYLVNLMDLSSNNLSRE--MPVELTRLIHLGTLNLSQNHLVGKIPTQIGK--LEWLESLDLSKNKLSGS 395 (458)
Q Consensus 330 ~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~--~~~L~~L~L~~n~~~~~ 395 (458)
..+.+..+.|++|++... +.......++|+.|+|++|...-....++.+ ...|+.|.+.||++.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 455677777777776433 1111223467777777777211111122222 23467777777777653
Done!