Query 040185
Match_columns 458
No_of_seqs 256 out of 3529
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 09:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.6E-51 2.9E-55 426.9 33.0 433 15-458 240-756 (768)
2 3rgz_A Protein brassinosteroid 100.0 9.5E-45 3.2E-49 381.0 32.0 409 18-438 174-714 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.6E-44 8.9E-49 369.1 23.0 419 23-458 34-571 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-42 5.7E-47 355.7 26.1 411 17-458 51-569 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-41 1.3E-45 350.1 34.5 238 219-458 324-634 (680)
6 3t6q_A CD180 antigen; protein- 100.0 2.6E-40 8.9E-45 339.4 34.4 416 13-445 48-564 (606)
7 4eco_A Uncharacterized protein 100.0 3.3E-41 1.1E-45 346.4 24.7 353 68-442 198-601 (636)
8 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-41 1.3E-45 357.2 25.8 421 22-458 24-571 (844)
9 2z63_A TOLL-like receptor 4, v 100.0 3.2E-40 1.1E-44 336.3 26.7 417 22-458 28-543 (570)
10 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-40 1.2E-44 332.1 23.4 394 25-458 3-493 (520)
11 4eco_A Uncharacterized protein 100.0 6.2E-40 2.1E-44 337.0 25.5 347 44-418 198-601 (636)
12 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-38 2E-42 326.1 35.6 398 22-433 25-510 (680)
13 4ecn_A Leucine-rich repeat pro 100.0 5.1E-39 1.7E-43 336.0 24.6 350 68-440 440-839 (876)
14 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-38 2E-42 321.9 30.4 402 22-438 32-531 (606)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-39 1.1E-43 327.4 19.0 404 22-451 26-514 (549)
16 3v47_A TOLL-like receptor 5B a 100.0 1.3E-37 4.6E-42 308.1 29.3 356 52-425 30-416 (455)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-38 1.6E-42 319.3 25.5 395 20-455 29-518 (562)
18 4ecn_A Leucine-rich repeat pro 100.0 1.1E-37 3.9E-42 325.9 28.5 347 44-419 440-842 (876)
19 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.8E-42 308.7 25.5 368 55-451 13-412 (455)
20 2z63_A TOLL-like receptor 4, v 100.0 1.8E-36 6.3E-41 308.5 26.4 383 17-424 71-538 (570)
21 4g8a_A TOLL-like receptor 4; l 100.0 1E-36 3.5E-41 314.3 24.2 205 245-458 368-591 (635)
22 3j0a_A TOLL-like receptor 5; m 100.0 9.3E-36 3.2E-40 315.9 27.8 380 50-438 22-514 (844)
23 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-36 1E-40 305.6 21.1 376 16-422 44-515 (549)
24 2z7x_B TOLL-like receptor 1, v 100.0 4E-36 1.4E-40 302.5 21.9 364 22-420 21-484 (520)
25 2id5_A Lingo-1, leucine rich r 100.0 7.5E-35 2.6E-39 290.0 25.4 301 53-394 33-334 (477)
26 1o6v_A Internalin A; bacterial 100.0 1.2E-33 4.1E-38 280.3 31.9 345 21-419 45-390 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-34 8.1E-39 292.1 23.8 366 22-421 52-514 (562)
28 2id5_A Lingo-1, leucine rich r 100.0 3.5E-34 1.2E-38 285.2 24.6 344 79-446 14-361 (477)
29 1o6v_A Internalin A; bacterial 100.0 2.7E-33 9.3E-38 277.7 30.2 340 51-438 45-385 (466)
30 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-33 1.6E-37 286.9 31.3 374 22-417 52-580 (635)
31 3o6n_A APL1; leucine-rich repe 100.0 6.6E-33 2.3E-37 268.7 25.9 330 75-444 44-377 (390)
32 3bz5_A Internalin-J, INLJ; leu 100.0 7.2E-33 2.5E-37 272.8 26.5 345 19-423 39-393 (457)
33 1ogq_A PGIP-2, polygalacturona 100.0 3.2E-33 1.1E-37 262.2 18.6 259 171-451 51-313 (313)
34 4fmz_A Internalin; leucine ric 100.0 1.6E-31 5.5E-36 254.8 30.2 305 50-417 42-346 (347)
35 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.9E-36 255.2 29.0 305 72-439 40-344 (347)
36 1jl5_A Outer protein YOPM; leu 100.0 4.5E-32 1.5E-36 266.9 26.0 348 22-418 11-410 (454)
37 3oja_B Anopheles plasmodium-re 100.0 4E-32 1.4E-36 277.3 26.2 330 75-444 50-383 (597)
38 1jl5_A Outer protein YOPM; leu 100.0 9.8E-31 3.3E-35 257.3 34.2 338 22-422 71-434 (454)
39 3o6n_A APL1; leucine-rich repe 100.0 3.6E-32 1.2E-36 263.5 20.8 302 101-440 45-351 (390)
40 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-30 9.3E-35 254.4 29.3 326 47-419 37-370 (457)
41 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.8E-36 271.7 21.1 304 101-441 51-358 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 8.1E-34 2.8E-38 281.4 -2.2 376 22-417 3-440 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 7.5E-31 2.6E-35 246.0 16.9 250 145-416 50-303 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-33 4.9E-38 279.7 -1.8 355 52-419 3-413 (461)
45 1xku_A Decorin; proteoglycan, 100.0 5.9E-29 2E-33 235.3 29.6 249 53-317 32-283 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-29 7.5E-34 238.4 25.8 249 53-318 34-285 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.5E-29 1.5E-33 236.3 25.4 287 77-415 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 2E-28 6.7E-33 231.7 28.2 247 145-417 52-306 (330)
49 3zyj_A Leucine-rich repeat-con 100.0 7.7E-28 2.6E-32 236.7 20.2 246 148-417 46-292 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 1E-27 3.5E-32 236.7 20.8 246 148-417 57-303 (452)
51 2z66_A Variable lymphocyte rec 100.0 4.3E-28 1.5E-32 226.9 16.0 184 222-418 76-262 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 1.5E-27 5E-32 227.9 16.2 280 123-422 30-319 (353)
53 3ogk_B Coronatine-insensitive 99.9 5.3E-29 1.8E-33 254.7 4.7 390 17-419 68-528 (592)
54 2z80_A TOLL-like receptor 2, v 99.9 5.8E-28 2E-32 230.7 10.6 277 146-451 32-318 (353)
55 2z66_A Variable lymphocyte rec 99.9 6.1E-27 2.1E-31 219.1 17.1 258 145-422 28-292 (306)
56 4fcg_A Uncharacterized protein 99.9 2.5E-26 8.6E-31 216.5 20.0 233 146-417 82-314 (328)
57 4fcg_A Uncharacterized protein 99.9 4.2E-26 1.4E-30 215.0 20.7 223 123-393 80-314 (328)
58 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-26 9.4E-31 212.3 19.0 233 171-422 33-266 (285)
59 3zyj_A Leucine-rich repeat-con 99.9 3.3E-25 1.1E-29 218.0 24.6 229 145-393 64-292 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 3.8E-25 1.3E-29 218.3 25.0 246 128-393 58-303 (452)
61 1ozn_A Reticulon 4 receptor; N 99.9 9.6E-26 3.3E-30 208.6 19.1 269 127-414 14-284 (285)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-24 6.6E-29 219.0 28.1 264 77-400 41-304 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-24 5.7E-29 219.5 24.8 266 53-378 41-306 (622)
64 3ogk_B Coronatine-insensitive 99.9 1.8E-27 6.3E-32 243.2 1.5 384 50-439 71-524 (592)
65 2p1m_B Transport inhibitor res 99.9 3.3E-27 1.1E-31 241.5 1.1 381 18-417 62-519 (594)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-26 5.1E-31 217.3 5.2 216 52-310 34-250 (317)
67 1wwl_A Monocyte differentiatio 99.9 6.3E-26 2.2E-30 212.5 8.0 250 124-418 43-310 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 4.1E-25 1.4E-29 207.5 12.8 265 126-423 12-282 (317)
69 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5.2E-30 222.5 7.0 217 51-310 33-250 (487)
70 2p1m_B Transport inhibitor res 99.9 7.6E-27 2.6E-31 238.8 -3.2 378 49-439 63-517 (594)
71 1wwl_A Monocyte differentiatio 99.9 3.2E-25 1.1E-29 207.8 6.0 246 169-439 42-307 (312)
72 3oja_A Leucine-rich immune mol 99.9 1E-24 3.6E-29 216.5 9.9 236 144-412 33-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.2E-22 4.1E-27 186.8 21.6 227 150-423 12-243 (276)
74 1p9a_G Platelet glycoprotein I 99.9 3.8E-23 1.3E-27 191.2 15.4 203 190-417 6-208 (290)
75 2z62_A TOLL-like receptor 4, v 99.9 2.3E-22 7.8E-27 185.0 19.5 177 128-312 11-192 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.1E-21 3.7E-26 179.8 22.3 203 170-393 16-218 (270)
77 2o6q_A Variable lymphocyte rec 99.9 1.9E-21 6.6E-26 178.1 22.8 202 146-369 17-218 (270)
78 1p9a_G Platelet glycoprotein I 99.9 2.5E-21 8.6E-26 179.0 20.4 202 167-393 7-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 5.6E-22 1.9E-26 181.9 15.9 202 169-423 40-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.2E-21 4.3E-26 179.5 16.8 166 244-423 59-224 (272)
81 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.1E-28 203.2 2.8 251 160-420 23-319 (386)
82 3goz_A Leucine-rich repeat-con 99.9 9.2E-23 3.1E-27 195.2 8.1 254 129-395 3-299 (362)
83 2ast_B S-phase kinase-associat 99.9 1.6E-22 5.6E-27 191.5 9.1 250 147-423 49-312 (336)
84 3goz_A Leucine-rich repeat-con 99.9 3.3E-22 1.1E-26 191.3 7.9 81 57-138 3-94 (362)
85 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.7E-26 183.6 11.0 207 169-417 90-307 (310)
86 2ast_B S-phase kinase-associat 99.8 2.1E-22 7.2E-27 190.8 4.2 197 102-307 48-257 (336)
87 3m19_A Variable lymphocyte rec 99.8 7.6E-21 2.6E-25 172.2 14.1 213 224-453 14-232 (251)
88 4glp_A Monocyte differentiatio 99.8 1.2E-20 4.2E-25 176.4 15.6 222 52-287 64-308 (310)
89 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7.2E-25 168.0 14.1 86 171-261 32-118 (239)
90 2ca6_A RAN GTPase-activating p 99.8 4.2E-22 1.4E-26 192.4 2.5 206 191-414 91-340 (386)
91 1h6u_A Internalin H; cell adhe 99.8 9.3E-20 3.2E-24 170.1 17.2 209 148-393 22-230 (308)
92 2xwt_C Thyrotropin receptor; s 99.8 6.2E-20 2.1E-24 164.9 14.9 105 145-258 31-140 (239)
93 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6E-24 168.2 17.9 191 144-369 40-230 (308)
94 3m19_A Variable lymphocyte rec 99.8 4.2E-19 1.5E-23 160.6 19.7 159 145-311 35-193 (251)
95 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.4E-23 166.2 17.9 240 127-390 12-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 2.4E-19 8.3E-24 170.5 12.7 241 147-414 11-256 (350)
97 3cvr_A Invasion plasmid antige 99.8 6.8E-19 2.3E-23 176.3 14.0 45 359-404 210-254 (571)
98 2o6s_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 150.1 15.8 133 170-309 28-160 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 8.3E-19 2.8E-23 155.2 11.3 132 274-416 33-164 (220)
100 2o6s_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 149.9 14.6 178 128-320 11-188 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.5E-23 153.9 10.9 133 275-418 34-167 (220)
102 3cvr_A Invasion plasmid antige 99.7 2.8E-17 9.4E-22 164.6 17.6 187 102-320 60-253 (571)
103 1h6t_A Internalin B; cell adhe 99.7 6E-17 2E-21 149.7 17.0 187 173-393 27-213 (291)
104 1h6t_A Internalin B; cell adhe 99.7 3.1E-17 1.1E-21 151.6 14.6 190 146-370 25-214 (291)
105 3e6j_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 142.7 15.9 85 333-418 89-173 (229)
106 2xot_A Amphoterin-induced prot 99.7 3.8E-17 1.3E-21 156.0 13.1 157 146-310 40-202 (361)
107 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.6E-21 161.4 16.7 189 146-369 22-210 (605)
108 3e6j_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 138.8 17.3 155 146-312 20-174 (229)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 1.7E-16 5.7E-21 140.3 14.7 154 148-312 14-168 (220)
110 2v9t_B SLIT homolog 2 protein 99.7 2.5E-16 8.4E-21 139.2 15.6 152 148-310 14-165 (220)
111 4ezg_A Putative uncharacterize 99.7 1E-16 3.4E-21 139.3 12.6 152 222-417 42-194 (197)
112 1m9s_A Internalin B; cell inva 99.7 2.1E-16 7.2E-21 160.0 16.2 191 126-349 23-214 (605)
113 2xot_A Amphoterin-induced prot 99.7 1E-16 3.5E-21 152.9 13.1 176 197-393 21-202 (361)
114 4ezg_A Putative uncharacterize 99.7 2.9E-16 9.8E-21 136.4 13.6 110 190-310 40-150 (197)
115 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.8E-21 144.3 9.5 168 193-393 18-185 (263)
116 1dce_A Protein (RAB geranylger 99.7 8.8E-19 3E-23 176.3 -7.3 203 73-304 346-567 (567)
117 1xeu_A Internalin C; cellular 99.7 5.7E-16 2E-20 140.8 11.9 148 51-239 40-187 (263)
118 3sb4_A Hypothetical leucine ri 99.6 1.1E-16 3.8E-21 150.8 6.4 218 169-410 100-327 (329)
119 3sb4_A Hypothetical leucine ri 99.6 4.1E-16 1.4E-20 146.9 8.5 223 144-387 100-328 (329)
120 1dce_A Protein (RAB geranylger 99.6 8.1E-18 2.8E-22 169.3 -5.2 106 195-312 442-548 (567)
121 2wfh_A SLIT homolog 2 protein 99.6 1.2E-15 4.1E-20 131.8 8.3 127 276-417 13-139 (193)
122 1w8a_A SLIT protein; signaling 99.6 1.5E-15 5.1E-20 131.2 8.4 131 251-396 11-142 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 9.3E-15 3.2E-19 123.3 11.7 134 272-418 23-161 (168)
124 1w8a_A SLIT protein; signaling 99.6 2.5E-14 8.4E-19 123.5 13.8 133 127-265 11-143 (192)
125 2ell_A Acidic leucine-rich nuc 99.6 1.7E-14 5.7E-19 121.8 11.8 132 169-310 23-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.5 2E-14 6.7E-19 118.7 9.8 129 272-413 16-149 (149)
127 4b8c_D Glucose-repressible alc 99.5 2.5E-15 8.5E-20 155.9 4.5 120 187-317 217-336 (727)
128 2je0_A Acidic leucine-rich nuc 99.5 2.4E-14 8.4E-19 118.1 9.7 126 170-305 17-148 (149)
129 4b8c_D Glucose-repressible alc 99.5 5.5E-15 1.9E-19 153.3 6.4 154 215-390 215-369 (727)
130 2wfh_A SLIT homolog 2 protein 99.5 2.8E-13 9.5E-18 116.9 14.7 126 128-261 14-139 (193)
131 2o6r_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 115.8 13.1 133 250-421 9-141 (177)
132 2o6r_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 114.4 14.5 111 145-262 28-138 (177)
133 4fdw_A Leucine rich hypothetic 99.5 6.7E-12 2.3E-16 120.7 21.3 239 146-414 136-380 (401)
134 4fdw_A Leucine rich hypothetic 99.5 8E-12 2.7E-16 120.2 21.8 262 75-367 112-381 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-13 1.4E-17 114.1 10.3 133 244-417 15-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.4 4.9E-13 1.7E-17 113.6 9.2 128 169-309 18-152 (176)
137 4fs7_A Uncharacterized protein 99.4 1.6E-11 5.4E-16 118.4 20.6 310 69-414 64-376 (394)
138 4fs7_A Uncharacterized protein 99.4 3.9E-11 1.3E-15 115.7 20.1 325 48-409 67-393 (394)
139 1ds9_A Outer arm dynein; leuci 99.3 2.8E-14 9.7E-19 123.8 -2.8 132 267-417 43-185 (198)
140 3un9_A NLR family member X1; l 99.3 5.4E-14 1.8E-18 134.0 -3.5 146 248-400 101-259 (372)
141 1ds9_A Outer arm dynein; leuci 99.3 2.4E-14 8.2E-19 124.3 -6.0 134 242-394 42-186 (198)
142 2r9u_A Variable lymphocyte rec 99.3 3.2E-12 1.1E-16 108.2 6.4 109 299-421 14-122 (174)
143 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6.1E-16 103.1 10.9 84 334-417 32-115 (170)
144 3g39_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 101.3 11.6 105 147-261 11-115 (170)
145 2r9u_A Variable lymphocyte rec 99.2 8.7E-11 3E-15 99.3 12.1 104 148-261 15-118 (174)
146 3un9_A NLR family member X1; l 99.2 1.5E-13 5.1E-18 131.0 -5.6 39 76-114 101-139 (372)
147 2ifg_A High affinity nerve gro 99.1 3E-11 1E-15 114.4 6.0 84 333-417 32-116 (347)
148 4gt6_A Cell surface protein; l 99.0 5.3E-08 1.8E-12 93.6 23.0 130 267-414 259-388 (394)
149 4gt6_A Cell surface protein; l 99.0 9.1E-08 3.1E-12 92.0 22.4 129 288-433 256-384 (394)
150 2ifg_A High affinity nerve gro 98.9 4.9E-09 1.7E-13 99.0 10.1 105 148-262 11-117 (347)
151 2ra8_A Uncharacterized protein 98.9 6E-10 2.1E-14 105.2 2.6 83 331-415 251-341 (362)
152 2ra8_A Uncharacterized protein 98.8 8.7E-09 3E-13 97.2 7.7 136 271-418 170-321 (362)
153 4h09_A Hypothetical leucine ri 98.8 1.1E-06 3.8E-11 83.9 22.6 76 52-132 46-121 (379)
154 4h09_A Hypothetical leucine ri 98.8 1.9E-06 6.3E-11 82.3 23.4 310 70-405 40-357 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 1.7E-08 5.9E-13 85.9 2.2 39 272-310 35-78 (185)
156 3e4g_A ATP synthase subunit S, 98.4 3.8E-08 1.3E-12 81.7 1.5 84 333-416 62-151 (176)
157 1io0_A Tropomodulin; LRR prote 98.4 7.4E-08 2.5E-12 82.0 2.7 68 243-310 31-106 (185)
158 3e4g_A ATP synthase subunit S, 98.4 6E-08 2.1E-12 80.5 2.0 93 43-135 52-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 4.2E-07 1.4E-11 81.3 -0.3 65 355-421 169-237 (267)
160 3rw6_A Nuclear RNA export fact 98.0 5.7E-06 1.9E-10 74.0 5.5 78 331-410 169-257 (267)
161 3rfe_A Platelet glycoprotein I 97.6 2.8E-05 9.4E-10 61.5 2.3 36 381-416 32-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 3.1E-05 1.1E-09 65.4 2.2 39 272-310 40-83 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00011 3.6E-09 62.2 2.6 66 245-310 38-111 (197)
164 3rfe_A Platelet glycoprotein I 96.1 0.015 5E-07 45.6 6.9 36 146-182 32-67 (130)
165 2lz0_A Uncharacterized protein 50.1 42 0.0015 24.2 6.0 41 348-389 12-52 (100)
166 2lz0_A Uncharacterized protein 43.1 31 0.0011 24.9 4.3 47 367-414 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.6e-51 Score=426.88 Aligned_cols=433 Identities=34% Similarity=0.520 Sum_probs=358.9
Q ss_pred hHHHHhccccceeeccCCcchhhcc----------------ccccCCCCCCCC-CcccEEEccCCCCCCCCCccccCCCC
Q 040185 15 LEWKKILISATRINKSDNSSVISEF----------------SNLGLDSHWIPP-FKLTFIKIRSCQPGPKFPTWLRNQTE 77 (458)
Q Consensus 15 ~~~~~~~~~l~~l~~s~~~~~~~~~----------------~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~ 77 (458)
..+...+++|++|++++|....... ....+|..+... ++|++|++++|.+.+.+|.+++++++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 3455667788888888776431100 001344445443 67777777777777677777777888
Q ss_pred ccEEEccCCCcccCCChh-HHhhcccCcEEecCCcccccCCCCCC-CCC-CCCEEECcCCcccCCCCCC-----CCCccE
Q 040185 78 LTTLVLNNARISDTIPNW-FWQLDLALDELDVGSNELSGRIPNSL-GFR-FPGTVDLRSNRYEGPLPLW-----SFNVTK 149 (458)
Q Consensus 78 L~~L~L~~~~i~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~-~L~~L~l~~n~~~~~~~~~-----l~~L~~ 149 (458)
|++|++++|.+++.+|.. +..+ ++|++|++++|.+++.+|..+ .++ +|++|++++|++.+..+.. +++|++
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKM-RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTC-TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred ccEEECCCCcccCcCCHHHHhcC-CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 888888887777666665 5554 778888888887776666665 454 7888888888877655544 446899
Q ss_pred EeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEE
Q 040185 150 LYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFL 229 (458)
Q Consensus 150 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 229 (458)
|++++|.+++.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|. +.+..|..+..+++|++|
T Consensus 399 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM------LEGEIPQELMYVKTLETL 471 (768)
T ss_dssp EECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEE
T ss_pred EECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc------ccCcCCHHHcCCCCceEE
Confidence 99999988878888776 59999999999999988888889999999999999998 667888999999999999
Q ss_pred EeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcC
Q 040185 230 IFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNL 309 (458)
Q Consensus 230 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 309 (458)
++++|.+++..|..+..+++|++|++++|++.+.+|.++.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 99999999899999999999999999999999889988877 99999999999999989999999999999999999999
Q ss_pred cccCchhhccCCCCce-----------------------------------------------------------eeccc
Q 040185 310 SGFIPSCVGNFSRTEY-----------------------------------------------------------VFYST 330 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~ 330 (458)
.+.+|..+........ ..+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 9888876654322110 01334
Q ss_pred ccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeee
Q 040185 331 LYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLN 410 (458)
Q Consensus 331 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 410 (458)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCccCCCCCCCCCCCCCccccCCCCCcCCCCCCCCCCCCCCCC
Q 040185 411 LSYNNLSGEIPKVNQFQSLKDPSIYAGNLALCGDPLPKRCSEIDGTSW 458 (458)
Q Consensus 411 l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~~~~~w 458 (458)
+++|+++|.+|..++|..+...+ +.||+.+||.|+. .|......+|
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~-~~gN~~Lcg~~l~-~C~~~~~~~~ 756 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAK-FLNNPGLCGYPLP-RCDPSNADGY 756 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGG-GCSCTEEESTTSC-CCCSCC----
T ss_pred CcCCcccccCCCchhhccCCHHH-hcCCchhcCCCCc-CCCCCccCCC
Confidence 99999999999999999999999 9999999999998 9998888777
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.5e-45 Score=381.01 Aligned_cols=409 Identities=30% Similarity=0.432 Sum_probs=279.3
Q ss_pred HHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHH
Q 040185 18 KKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFW 97 (458)
Q Consensus 18 ~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~ 97 (458)
...+++|++|++++|..... . ....+++|++|++++|.+.+.+|. ++++++|++|++++|.+++..|..+.
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~------~--~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGD------V--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp TTCCTTCCEEECCSSEEESC------C--BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred hccCCCCCEEECCCCccccc------C--CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 45566777777777654211 0 113344555555555555544444 55555555555555555544454444
Q ss_pred hhcccCcEEecCCcc----------------------cccCCCCCC-C-CCCCCEEECcCCcccCCCCCC---CCCccEE
Q 040185 98 QLDLALDELDVGSNE----------------------LSGRIPNSL-G-FRFPGTVDLRSNRYEGPLPLW---SFNVTKL 150 (458)
Q Consensus 98 ~~~~~L~~L~L~~~~----------------------l~~~~~~~~-~-~~~L~~L~l~~n~~~~~~~~~---l~~L~~L 150 (458)
.+ ++|++|++++|. +++.+|..+ . +++|++|++++|++.+..|.. +++|++|
T Consensus 245 ~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 245 TC-TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TC-SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred cC-CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 44 445555555444 444444433 2 356666666666655554433 3456666
Q ss_pred eccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCC-CCcEEEcccCcC--------------------CCC
Q 040185 151 YLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQ-QLLTLVISNNNY--------------------MSN 209 (458)
Q Consensus 151 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L~L~~~~~--------------------~~~ 209 (458)
++++|.+++.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+ ++.
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 66666666566655333566677777776666655565555554 555555555542 112
Q ss_pred CCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcC
Q 040185 210 NSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAI 289 (458)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 289 (458)
+.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+..
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCcC
Confidence 2244456667777788888888888887777777888888888888888887777777665 888888888888888778
Q ss_pred CccccCCCCCCEEEcCCCcCcccCchhhccCCCCceee-------------cccccccCEEEcccCcCCccCChhh----
Q 040185 290 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVF-------------YSTLYLVNLMDLSSNNLSREMPVEL---- 352 (458)
Q Consensus 290 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~l~~~~~~~l---- 352 (458)
|..+..+++|+.|++++|++.+..|..+..++.+..+. +..+++|+.|++++|.+.+.+|..+
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 88888888888888888888888888777777655443 3356778899998888775555432
Q ss_pred ------------------------------------------------------------------ccccCCCeeeCccC
Q 040185 353 ------------------------------------------------------------------TRLIHLGTLNLSQN 366 (458)
Q Consensus 353 ------------------------------------------------------------------~~~~~L~~L~l~~n 366 (458)
..+++|++|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 23467889999999
Q ss_pred cCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC-CCCCCCCCCccccCC
Q 040185 367 HLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV-NQFQSLKDPSIYAGN 438 (458)
Q Consensus 367 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~~~ 438 (458)
.+++.+|..++.+++|+.|+|++|.+++.+|..+..+++|++|++++|+++|.+|.. ..++.|++++ +.+|
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~-ls~N 714 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID-LSNN 714 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE-CCSS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE-CcCC
Confidence 999999999999999999999999999999999999999999999999999998865 6788888888 5555
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-44 Score=369.12 Aligned_cols=419 Identities=21% Similarity=0.202 Sum_probs=241.0
Q ss_pred ccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhccc
Q 040185 23 SATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLA 102 (458)
Q Consensus 23 ~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~ 102 (458)
.+++||+++|.... ..+..+..+++|++|++++|.+.+..|.+|+++++|++|+|++|.+++..|..|..+ ++
T Consensus 34 ~l~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~ 106 (606)
T 3t6q_A 34 STECLEFSFNVLPT------IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KA 106 (606)
T ss_dssp TCCEEECTTCCCSE------ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TT
T ss_pred cCcEEEccCCccCc------CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc-cc
Confidence 35566666654321 112344555556666666655554445555555666666666555555555555554 55
Q ss_pred CcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCC-CCC--CCCccEEeccCCcCcCcCchhhhcCCCCCc-----
Q 040185 103 LDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPL-PLW--SFNVTKLYLNNNLFSGPIPRDFGQKIPFLT----- 173 (458)
Q Consensus 103 L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~-~~~--l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~----- 173 (458)
|++|++++|.+++..+..+ ++++|++|++++|++.+.. +.. +++|++|++++|.+++..+..+. .+++|+
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~ 185 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLN 185 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEE
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEe
Confidence 5555555555553222222 4555555555555554421 211 34555555555554422222222 233333
Q ss_pred ------------------------------------------------------------------------EEEccCCC
Q 040185 174 ------------------------------------------------------------------------DLDISFNS 181 (458)
Q Consensus 174 ------------------------------------------------------------------------~L~l~~~~ 181 (458)
+|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 33333333
Q ss_pred CccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCC
Q 040185 182 LNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 182 i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (458)
+.+..+..+..+++|++|++++|. +. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~------l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATH------LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSC------CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred cCccCHHHhccccCCCEEeccCCc------cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 333333446667777777777777 33 45666777777777777777777666666777777777777777766
Q ss_pred CCCchhhhhCCCCccEEEcccCcCCCcC--CccccCCCCCCEEEcCCCcCcccCchhhccCCCCceee------------
Q 040185 262 GNIPAWIGESMPSLSILRLRSNYFNGAI--PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVF------------ 327 (458)
Q Consensus 262 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~------------ 327 (458)
+.++......+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..++.+..+.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 5555554444677777777777666443 45566666777777777766665555555554433222
Q ss_pred --cccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCc---ccccccCCCCCcEEeCCCCcccccCCccccC
Q 040185 328 --YSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGK---IPTQIGKLEWLESLDLSKNKLSGSIPPSMVS 402 (458)
Q Consensus 328 --~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~ 402 (458)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+++..|..+..
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 23455677777777777666666666667777777777766541 1234566666677777776666555666666
Q ss_pred CCCCCeeecccCcCCccCCCC-CCCCCCCCCccccC------------------CCCCcCCCCCCCCCCCCCCCC
Q 040185 403 LTFMNHLNLSYNNLSGEIPKV-NQFQSLKDPSIYAG------------------NLALCGDPLPKRCSEIDGTSW 458 (458)
Q Consensus 403 l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~~------------------~~~~~~~~~~~~c~~~~~~~w 458 (458)
+++|++|++++|++++.+|.. ..++.| .++ +.+ ..++.+|||.|+|...|+.+|
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~-L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w 571 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN-LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE-CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHH
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEE-CcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHH
Confidence 666666666666666554422 334433 332 111 133567899999998877666
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-42 Score=355.69 Aligned_cols=411 Identities=19% Similarity=0.151 Sum_probs=253.1
Q ss_pred HHHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhH
Q 040185 17 WKKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWF 96 (458)
Q Consensus 17 ~~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~ 96 (458)
....+++|++||+++|.... ..|..+..+++|++|++++|.+.+..|.+++++++|++|++++|.+++..+..+
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~------i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIET------IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred hccCCccCcEEeCCCCcccc------cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc
Confidence 34455666666666664321 113345566677777777777765556677777777777777777765555556
Q ss_pred HhhcccCcEEecCCccccc-CCCCCC-CCCCCCEEECcCCcccCCCCCCCC-----------------------------
Q 040185 97 WQLDLALDELDVGSNELSG-RIPNSL-GFRFPGTVDLRSNRYEGPLPLWSF----------------------------- 145 (458)
Q Consensus 97 ~~~~~~L~~L~L~~~~l~~-~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~----------------------------- 145 (458)
..+ ++|++|++++|.+.+ .+|..+ ++++|++|++++|++.+..+..+.
T Consensus 125 ~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 125 GQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp TTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred CCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence 665 677777777777664 345544 567777777777766654433211
Q ss_pred -CccEEeccCCcCcC----------------------------------------------------------cCchhhh
Q 040185 146 -NVTKLYLNNNLFSG----------------------------------------------------------PIPRDFG 166 (458)
Q Consensus 146 -~L~~L~L~~~~~~~----------------------------------------------------------~~~~~~~ 166 (458)
+|++|++++|.+++ ..+. +
T Consensus 204 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~ 281 (606)
T 3vq2_A 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--F 281 (606)
T ss_dssp CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--C
T ss_pred ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--c
Confidence 23344444333210 0111 1
Q ss_pred cCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccC
Q 040185 167 QKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKN 246 (458)
Q Consensus 167 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 246 (458)
..+++|+.|+++++.+. .++ .+..+++|++|++++|. + +.+| .+ .+++|++|++++|...+.. .+..
T Consensus 282 ~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~------l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~ 348 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQ------L-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVA 348 (606)
T ss_dssp GGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCC------C-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCC
T ss_pred ccCCCCCEEEecCccch-hhh-hccccccCCEEEccccc------C-cccc-cC-CCCccceeeccCCcCccch--hhcc
Confidence 13456666666666665 344 56677777777777777 3 2344 23 5556666666665433221 3445
Q ss_pred CCCCCEEecCCCcCCCC--CchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCc-hhhccCCCC
Q 040185 247 CSMMESLDLGDNQLSGN--IPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIP-SCVGNFSRT 323 (458)
Q Consensus 247 l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~ 323 (458)
+++|++|++++|.+.+. .+..+.. +++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..+..++.+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 55555555555555421 1333332 5555555555555442 33445555555555555555554433 233333322
Q ss_pred ceee-------------cccccccCEEEcccCcCCc-cCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCC
Q 040185 324 EYVF-------------YSTLYLVNLMDLSSNNLSR-EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 389 (458)
Q Consensus 324 ~~~~-------------~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~ 389 (458)
..+. +..+++|+.|++++|.+.+ ..+..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 2221 2345688999999998876 3677788889999999999998877778888899999999999
Q ss_pred CcccccCCccccCCCCCCeeecccCcCCccCCCCCCCC-CCCCCccccCCCCCcCCCCCCCCCCCCCCCC
Q 040185 390 NKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQ-SLKDPSIYAGNLALCGDPLPKRCSEIDGTSW 458 (458)
Q Consensus 390 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~c~~~~~~~w 458 (458)
|++++..|..+..+++|++|++++|+++...+.+..++ +|+.++ +.+|||.|.|...|+.+|
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~-------l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN-------LTNNSVACICEHQKFLQW 569 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE-------CCSCCCCCSSTTHHHHTT
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE-------ccCCCcccCCccHHHHHH
Confidence 99987778888889999999999999885444444554 466655 456788889988887777
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-41 Score=350.06 Aligned_cols=238 Identities=21% Similarity=0.211 Sum_probs=150.4
Q ss_pred ccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcC----------------------------CCCCchhhhh
Q 040185 219 SIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQL----------------------------SGNIPAWIGE 270 (458)
Q Consensus 219 ~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l----------------------------~~~~~~~~~~ 270 (458)
.|..+++|++|++++|.+++..+..+..+++|++|++++|.+ .+..+..+ .
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-S 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-T
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-h
Confidence 455566677777777776665555666666666666665542 21111111 2
Q ss_pred CCCCccEEEcccCcCCCcCC-ccccCCCCCCEEEcCCCcCcccCchhhccCCCCceee---------------ccccccc
Q 040185 271 SMPSLSILRLRSNYFNGAIP-PELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVF---------------YSTLYLV 334 (458)
Q Consensus 271 ~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~---------------~~~~~~L 334 (458)
.+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..++.+..+. +..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 24455555555555443322 3445555555555555555444444444444333222 3345678
Q ss_pred CEEEcccCcCCccCChhhccccCCCeeeCccCcCCCccc--------ccccCCCCCcEEeCCCCcccccCCccccCCCCC
Q 040185 335 NLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIP--------TQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFM 406 (458)
Q Consensus 335 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--------~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 406 (458)
+.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+.++++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 888888888887777778888888888888888764211 236778888888888888884334457888899
Q ss_pred CeeecccCcCCccCCCC-CCCCCCCCCccccCC-------------------CCCcCCCCCCCCCC-CCCCCC
Q 040185 407 NHLNLSYNNLSGEIPKV-NQFQSLKDPSIYAGN-------------------LALCGDPLPKRCSE-IDGTSW 458 (458)
Q Consensus 407 ~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~~~-------------------~~~~~~~~~~~c~~-~~~~~w 458 (458)
++|++++|.+++..+.. ..+++|+.++ +.+| .++.+|||.|.|.. .|+.+|
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLN-LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEE-CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEE-CCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence 99999999888655543 4677777766 3333 23568999999996 999888
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-40 Score=339.38 Aligned_cols=416 Identities=20% Similarity=0.170 Sum_probs=344.1
Q ss_pred hhhHHHHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCC
Q 040185 13 LKLEWKKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTI 92 (458)
Q Consensus 13 ~~~~~~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~ 92 (458)
........+++|++||+++|.... ..|..+..+++|++|++++|.+.+..|.+++++++|++|++++|.+++..
T Consensus 48 ~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 48 IQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp ECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CChhHhccCccceEEECCCCccce------eChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 333455678999999999986431 23556788899999999999998778899999999999999999998766
Q ss_pred ChhHHhhcccCcEEecCCccccc-CCCCCCCCCCCCEEECcCCcccCCCCC---CCCCcc--EEeccCCcCcCcCch---
Q 040185 93 PNWFWQLDLALDELDVGSNELSG-RIPNSLGFRFPGTVDLRSNRYEGPLPL---WSFNVT--KLYLNNNLFSGPIPR--- 163 (458)
Q Consensus 93 ~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~L~--~L~L~~~~~~~~~~~--- 163 (458)
+..+..+ ++|++|++++|.+.+ ..+...++++|++|++++|++.+..+. .+.+|+ +|++++|.+++..+.
T Consensus 122 ~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 122 FIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred cchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 7777777 899999999999986 336666899999999999999876553 356777 888888876532221
Q ss_pred -----------------------------------------------------------------------hhhcCCCCC
Q 040185 164 -----------------------------------------------------------------------DFGQKIPFL 172 (458)
Q Consensus 164 -----------------------------------------------------------------------~~~~~l~~L 172 (458)
..+..+++|
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 113357899
Q ss_pred cEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCcc-ccccCCCCCC
Q 040185 173 TDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVP-PSLKNCSMME 251 (458)
Q Consensus 173 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~ 251 (458)
++|++++|.++ .+|..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANK------FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC------CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCC------cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 99999999998 788889999999999999999 556667788899999999999999875554 4588999999
Q ss_pred EEecCCCcCCCCC--chhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCch-hhccCCCCceee-
Q 040185 252 SLDLGDNQLSGNI--PAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPS-CVGNFSRTEYVF- 327 (458)
Q Consensus 252 ~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~- 327 (458)
+|++++|.+.+.. +..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..++.+..+.
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EEECCCCccccccCcchhcc-cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 9999999998433 44444 499999999999999888888899999999999999999876553 366665554333
Q ss_pred ------------cccccccCEEEcccCcCCcc---CChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcc
Q 040185 328 ------------YSTLYLVNLMDLSSNNLSRE---MPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 392 (458)
Q Consensus 328 ------------~~~~~~L~~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~ 392 (458)
+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 34578999999999999763 335688899999999999999977788999999999999999999
Q ss_pred cccCCccccCCCCCCeeecccCcCCccCCCC-CCCCCCCCCccccCCCCCcCCC
Q 040185 393 SGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV-NQFQSLKDPSIYAGNLALCGDP 445 (458)
Q Consensus 393 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~~~~~~~~~~ 445 (458)
++..|..+..++.| +|++++|++++.+|.. +.++.|+.++ +.||+..|+++
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~c~c~ 564 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN-LRQNPLDCTCS 564 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE-CTTCCEECSGG
T ss_pred CcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe-CCCCCccccCC
Confidence 98889999999999 9999999999877764 6788999999 89999988766
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-41 Score=346.39 Aligned_cols=353 Identities=19% Similarity=0.257 Sum_probs=272.7
Q ss_pred CCccccCCCCccEEEccCCCcccC-----------------CChhHH--hhcccCcEEecCCcccccCCCCCC-CCCCCC
Q 040185 68 FPTWLRNQTELTTLVLNNARISDT-----------------IPNWFW--QLDLALDELDVGSNELSGRIPNSL-GFRFPG 127 (458)
Q Consensus 68 ~~~~l~~~~~L~~L~L~~~~i~~~-----------------~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~ 127 (458)
+|.+++++++|++|+|++|.+++. +|..+. ++ ++|++|++++|.+.+.+|..+ ++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 677788888888888888888774 777777 66 788888888888887777766 688888
Q ss_pred EEECcCCc-ccC-CCCCC---------CCCccEEeccCCcCcCcCch--hhhcCCCCCcEEEccCCCCccCCcccccCCC
Q 040185 128 TVDLRSNR-YEG-PLPLW---------SFNVTKLYLNNNLFSGPIPR--DFGQKIPFLTDLDISFNSLNGSVPKSIGNLQ 194 (458)
Q Consensus 128 ~L~l~~n~-~~~-~~~~~---------l~~L~~L~L~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~ 194 (458)
+|++++|+ +++ .+|.. +++|++|++++|.++ .+|. .+. .+++|++|++++|.+.+.+| .+..++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 88888887 776 55533 268888888888887 7777 555 58888888888888887777 788888
Q ss_pred CCcEEEcccCcCCCCCCCcccCCcccCCcCC-CcEEEeecccCCCCccccccCCC--CCCEEecCCCcCCCCCchhhhh-
Q 040185 195 QLLTLVISNNNYMSNNSLPGEIPDSIGSLLS-VRFLIFCNNHISGEVPPSLKNCS--MMESLDLGDNQLSGNIPAWIGE- 270 (458)
Q Consensus 195 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~- 270 (458)
+|++|++++|. +. .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+.+..|..+..
T Consensus 354 ~L~~L~L~~N~------l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 354 KLASLNLAYNQ------IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EESEEECCSSE------EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCEEECCCCc------cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 88888888888 44 56777788888 888888888888 6676666554 7888888888888666655540
Q ss_pred -----CCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCch-hhccCCCCceeecccccccCEEEcccCcC
Q 040185 271 -----SMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPS-CVGNFSRTEYVFYSTLYLVNLMDLSSNNL 344 (458)
Q Consensus 271 -----~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 344 (458)
.+++|++|++++|.+....+..+..+++|+.|++++|.+. .+|. .+.... ..+..+++|+.|++++|.+
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~----~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN----ENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT----EECTTGGGCCEEECCSSCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc----ccccccCCccEEECcCCcC
Confidence 2668888888888888443334556888888888888887 3333 222111 0122344899999999999
Q ss_pred CccCChhhc--cccCCCeeeCccCcCCCcccccccCCCCCcEEeC------CCCcccccCCccccCCCCCCeeecccCcC
Q 040185 345 SREMPVELT--RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDL------SKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 345 ~~~~~~~l~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L------~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 416 (458)
. .+|..+. .+++|++|++++|++.+ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|++++|++
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 7 5777776 89999999999999995 8989999999999999 56778888999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCccccCCCCCc
Q 040185 417 SGEIPKVNQFQSLKDPSIYAGNLALC 442 (458)
Q Consensus 417 ~~~~p~~~~~~~l~~~~~~~~~~~~~ 442 (458)
+.+|.. .++.|+.++ +.+|+..|
T Consensus 579 -~~ip~~-~~~~L~~L~-Ls~N~l~~ 601 (636)
T 4eco_A 579 -RKVNEK-ITPNISVLD-IKDNPNIS 601 (636)
T ss_dssp -CBCCSC-CCTTCCEEE-CCSCTTCE
T ss_pred -CccCHh-HhCcCCEEE-CcCCCCcc
Confidence 567764 337888888 77776665
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=357.22 Aligned_cols=421 Identities=19% Similarity=0.143 Sum_probs=256.8
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCC-CccccCCCCccEEEccCCCcccCCChhHHhhc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKF-PTWLRNQTELTTLVLNNARISDTIPNWFWQLD 100 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~ 100 (458)
.++++||+++|.... ..+..+..+++|++|++++|...+.+ |.+++++++|++|+|++|.+++..|..|..+
T Consensus 24 ~~l~~LdLs~N~i~~------i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l- 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT------VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL- 96 (844)
T ss_dssp TTCCEEEEESCCCCE------ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC-
T ss_pred CCcCEEECCCCcCCc------cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC-
Confidence 568888888876431 12445667778888888887554444 6677888888888888888877777777776
Q ss_pred ccCcEEecCCcccccCCCCC--C-CCCCCCEEECcCCcccCCCCC----CCCCccEEeccCCcCcCcCchhhhcCC--CC
Q 040185 101 LALDELDVGSNELSGRIPNS--L-GFRFPGTVDLRSNRYEGPLPL----WSFNVTKLYLNNNLFSGPIPRDFGQKI--PF 171 (458)
Q Consensus 101 ~~L~~L~L~~~~l~~~~~~~--~-~~~~L~~L~l~~n~~~~~~~~----~l~~L~~L~L~~~~~~~~~~~~~~~~l--~~ 171 (458)
++|++|+|++|.+++..+.. + ++++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+.. + ++
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~ 175 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKT 175 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCc
Confidence 78888888888877654442 3 677888888888877765432 2567788888887776555555432 3 45
Q ss_pred CcEEEccCCCCccCCcccccCCCC------CcEEEcccCcCC--------------------------------------
Q 040185 172 LTDLDISFNSLNGSVPKSIGNLQQ------LLTLVISNNNYM-------------------------------------- 207 (458)
Q Consensus 172 L~~L~l~~~~i~~~~~~~l~~l~~------L~~L~L~~~~~~-------------------------------------- 207 (458)
|+.|++++|.+.+..+..+..+++ |++|++++|.+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 555555555554433333333322 444444444210
Q ss_pred ------------------CCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhh
Q 040185 208 ------------------SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIG 269 (458)
Q Consensus 208 ------------------~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 269 (458)
+.+.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 00013344455666677777777777777766666777777777777777777633343333
Q ss_pred hCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCcee-----------------------
Q 040185 270 ESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYV----------------------- 326 (458)
Q Consensus 270 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~----------------------- 326 (458)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+++... ++.+..+
T Consensus 336 -~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 336 -GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp -SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred -CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccccccccccceeecc
Confidence 37777777777777776555567777777777777777653211 1111100
Q ss_pred -----------ecccccccCEEEcccCcCCccCCh-hhccccCCCeeeCccCcCC-----CcccccccCCCCCcEEeCCC
Q 040185 327 -----------FYSTLYLVNLMDLSSNNLSREMPV-ELTRLIHLGTLNLSQNHLV-----GKIPTQIGKLEWLESLDLSK 389 (458)
Q Consensus 327 -----------~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~~~-----~~~~~~l~~~~~L~~L~L~~ 389 (458)
.+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+. +..+..+..+++|+.|+|++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 012456677777777776543222 2334556666666666554 22234455666777777777
Q ss_pred CcccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCC---------------CCCcCCCCCCCCCCCC
Q 040185 390 NKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGN---------------LALCGDPLPKRCSEID 454 (458)
Q Consensus 390 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~c~~~~ 454 (458)
|.+++..+..+..+++|++|++++|.+++..|... .++|+.++ +.+| .++.+|||.|.|...|
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~~~L~~L~-Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILD-ISRNQLLAPNPDVFVSLSVLDITHNKFICECELST 567 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC-CSCCCEEE-EEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCS
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhh-hccccEEE-CCCCcCCCCChhHhCCcCEEEecCCCcccccccHH
Confidence 77765556666667777777777776664433322 14444433 1111 2345678888998888
Q ss_pred CCCC
Q 040185 455 GTSW 458 (458)
Q Consensus 455 ~~~w 458 (458)
+.+|
T Consensus 568 f~~~ 571 (844)
T 3j0a_A 568 FINW 571 (844)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=336.31 Aligned_cols=417 Identities=21% Similarity=0.225 Sum_probs=270.3
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
.++++||+++|..... .+..+..+++|++|++++|.+.+..+.+++++++|++|++++|.+++..+..|..+ +
T Consensus 28 ~~l~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-S 100 (570)
T ss_dssp SSCCEEECCSCCCCEE------CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-T
T ss_pred ccccEEEccCCccCcc------ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc-c
Confidence 4688888888864311 12346677889999999888876667778888999999999888887777777776 8
Q ss_pred cCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCC-CCCC---CCCccEEeccCCcCcCcCchhhhcCCCCC----
Q 040185 102 ALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGP-LPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFL---- 172 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~-~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L---- 172 (458)
+|++|++++|.+++..+..+ ++++|++|++++|.+.+. .|.. +++|++|++++|.+++..+..+. .+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHTCTTCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc-chhccchhh
Confidence 89999999888884433234 788899999988888763 4543 56888888888888754444444 36666
Q ss_pred cEEEccCCCCccCCcccccCCCCCcEEEcccCcCCC---------------------------------C----------
Q 040185 173 TDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMS---------------------------------N---------- 209 (458)
Q Consensus 173 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~---------------------------------~---------- 209 (458)
+.+++++|.+.+..+..+... +|++|++++|.... .
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 778888877765444444332 45555554441000 0
Q ss_pred ---------CCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhh-----------
Q 040185 210 ---------NSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIG----------- 269 (458)
Q Consensus 210 ---------~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----------- 269 (458)
..+.+..+..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|....
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESC
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCC
Confidence 0112223334444455555555555544 233333333 3344443333333 2222100
Q ss_pred --------hCCCCccEEEcccCcCCCcC--CccccCCCCCCEEEcCCCcCcccCchhhccCCCCcee-------------
Q 040185 270 --------ESMPSLSILRLRSNYFNGAI--PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYV------------- 326 (458)
Q Consensus 270 --------~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~------------- 326 (458)
..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+. +..++.+..+
T Consensus 336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred ccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 12444455555544444221 33344455555555555544432222 3333322221
Q ss_pred -ecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCC-CcccccccCCCCCcEEeCCCCcccccCCccccCCC
Q 040185 327 -FYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLV-GKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLT 404 (458)
Q Consensus 327 -~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~ 404 (458)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 2345678999999999998888888889999999999999887 46888899999999999999999988888999999
Q ss_pred CCCeeecccCcCCccCCC-CCCCCCCCCCccccCCCCCcCCCCCCCCCCCCCC-CC
Q 040185 405 FMNHLNLSYNNLSGEIPK-VNQFQSLKDPSIYAGNLALCGDPLPKRCSEIDGT-SW 458 (458)
Q Consensus 405 ~L~~L~l~~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~~~~-~w 458 (458)
+|++|++++|++++.+|. +..++.|++++ +.++|+.|.|...|+. +|
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------l~~N~~~~~~~~~~~~~~w 543 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIW-------LHTNPWDCSCPRIDYLSRW 543 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEE-------CCSSCBCCCTTTTHHHHHH
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEE-------ecCCcccCCCcchHHHHHH
Confidence 999999999999987665 46677887776 4455777788766654 44
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=332.14 Aligned_cols=394 Identities=19% Similarity=0.211 Sum_probs=266.1
Q ss_pred ceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCc
Q 040185 25 TRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALD 104 (458)
Q Consensus 25 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~ 104 (458)
+++|+++|... .+|..+. ++|++|++++|.+.+..+..++++++|++|+|++|++++..|..|..+ ++|+
T Consensus 3 ~~l~ls~n~l~-------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLI-------HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELE 72 (520)
T ss_dssp CEEECTTSCCS-------SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCC
T ss_pred ceEecCCCCcc-------ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCC
Confidence 45778877643 3444443 688888888888876666778888888888888888887777777776 7888
Q ss_pred EEecCCcccccCCCCCCCCCCCCEEECcCCcccCC-CCCC---CCCccEEeccCCcCcCcCchhhhcCCCCC--cEEEcc
Q 040185 105 ELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGP-LPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFL--TDLDIS 178 (458)
Q Consensus 105 ~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L--~~L~l~ 178 (458)
+|++++|+++ .+|.. .+++|++|++++|++.+. .|.. +++|++|++++|.+++ ..+. .+++| ++|+++
T Consensus 73 ~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~-~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL-PIAHLNISKVLLV 146 (520)
T ss_dssp EEECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG-GGTTSCEEEEEEE
T ss_pred EEecCCCcee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc-ccccceeeEEEee
Confidence 8888888887 45555 778888888888888763 4433 5678888888888764 2232 46666 888888
Q ss_pred CCCC--ccCCcccccC--------------------------CCCCcEEEcccCc-------CC----------------
Q 040185 179 FNSL--NGSVPKSIGN--------------------------LQQLLTLVISNNN-------YM---------------- 207 (458)
Q Consensus 179 ~~~i--~~~~~~~l~~--------------------------l~~L~~L~L~~~~-------~~---------------- 207 (458)
+|.+ .+..|..+.. +++|+.+++++|. +.
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 8877 4344443333 3334444443332 00
Q ss_pred -CCCCCcccCCccc---CCcCCCcEEEeecccCCCCccccc-----cCCC--------------------------CCCE
Q 040185 208 -SNNSLPGEIPDSI---GSLLSVRFLIFCNNHISGEVPPSL-----KNCS--------------------------MMES 252 (458)
Q Consensus 208 -~~~~~~~~~~~~~---~~l~~L~~L~l~~~~l~~~~~~~l-----~~l~--------------------------~L~~ 252 (458)
+.+.+.+..+..+ ...++|++|++++|.+++..|..+ ..++ +|+.
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSE
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeE
Confidence 0000000000000 001245555555555554444444 3444 4555
Q ss_pred EecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcc--cCchhhccCCCCceeeccc
Q 040185 253 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSG--FIPSCVGNFSRTEYVFYST 330 (458)
Q Consensus 253 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~~~~~ 330 (458)
|++++|.+. ..+. ...+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ..|..+. .
T Consensus 307 L~l~~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-----------~ 372 (520)
T 2z7x_B 307 FTVSGTRMV-HMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-----------Q 372 (520)
T ss_dssp EEEESSCCC-CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-----------T
T ss_pred EEcCCCccc-cccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-----------h
Confidence 555555544 2221 1347888888888888887777888888888888888888875 2333343 3
Q ss_pred ccccCEEEcccCcCCccCCh-hhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCee
Q 040185 331 LYLVNLMDLSSNNLSREMPV-ELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 409 (458)
Q Consensus 331 ~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 409 (458)
+++|+.|++++|.+.+.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 55899999999999874554 477889999999999999877776654 78999999999999 888888899999999
Q ss_pred ecccCcCCccCCC-CCCCCCCCCCccccCCCCCcCCCCCCCCCCCCC-CCC
Q 040185 410 NLSYNNLSGEIPK-VNQFQSLKDPSIYAGNLALCGDPLPKRCSEIDG-TSW 458 (458)
Q Consensus 410 ~l~~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~~~-~~w 458 (458)
++++|++++..+. +..++.|++++ +.+||+.|.|...|+ .+|
T Consensus 450 ~L~~N~l~~l~~~~~~~l~~L~~L~-------l~~N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 450 NVASNQLKSVPDGIFDRLTSLQKIW-------LHTNPWDCSCPRIDYLSRW 493 (520)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEE-------CCSSCBCCCHHHHHHHHHH
T ss_pred ECCCCcCCccCHHHhccCCcccEEE-------CcCCCCcccCCchHHHHHH
Confidence 9999999954433 56677777766 455677888887776 544
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-40 Score=336.96 Aligned_cols=347 Identities=19% Similarity=0.263 Sum_probs=300.3
Q ss_pred CCCCCCCCCcccEEEccCCCCCCC-----------------CCcccc--CCCCccEEEccCCCcccCCChhHHhhcccCc
Q 040185 44 LDSHWIPPFKLTFIKIRSCQPGPK-----------------FPTWLR--NQTELTTLVLNNARISDTIPNWFWQLDLALD 104 (458)
Q Consensus 44 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~l~--~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~ 104 (458)
+|..++.+++|++|+|++|.+.+. +|..++ ++++|++|+|++|.+.+.+|..+.++ ++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC-SSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC-CCCC
Confidence 677788899999999999999874 899999 99999999999999999999999988 9999
Q ss_pred EEecCCcc-ccc-CCCCCC-CC------CCCCEEECcCCcccCCCCC-----CCCCccEEeccCCcCcCcCchhhhcCCC
Q 040185 105 ELDVGSNE-LSG-RIPNSL-GF------RFPGTVDLRSNRYEGPLPL-----WSFNVTKLYLNNNLFSGPIPRDFGQKIP 170 (458)
Q Consensus 105 ~L~L~~~~-l~~-~~~~~~-~~------~~L~~L~l~~n~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 170 (458)
+|++++|+ +++ .+|..+ .+ ++|++|++++|+++ .+|. .+++|++|++++|.+++.+| .+. .++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCC
Confidence 99999998 886 566554 33 89999999999999 6665 36799999999999998888 554 599
Q ss_pred CCcEEEccCCCCccCCcccccCCCC-CcEEEcccCcCCCCCCCcccCCcccCCcC--CCcEEEeecccCCCCcccccc--
Q 040185 171 FLTDLDISFNSLNGSVPKSIGNLQQ-LLTLVISNNNYMSNNSLPGEIPDSIGSLL--SVRFLIFCNNHISGEVPPSLK-- 245 (458)
Q Consensus 171 ~L~~L~l~~~~i~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~l~-- 245 (458)
+|++|++++|.+. .+|..+..+++ |++|++++|. +. .+|..+.... +|++|++++|.+++..|..+.
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~------l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK------LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC------CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc------Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 9999999999998 78888999999 9999999999 44 5677776654 899999999999988888887
Q ss_pred -----CCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCcccc-CC-------CCCCEEEcCCCcCccc
Q 040185 246 -----NCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELC-KL-------SALHILDLSHNNLSGF 312 (458)
Q Consensus 246 -----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l-------~~L~~L~l~~n~l~~~ 312 (458)
.+++|++|++++|.+. .+|..++..+++|++|++++|.+. .+|.... .. ++|+.|++++|.++ .
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred ccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 7789999999999999 899888877999999999999998 5554333 22 38999999999998 5
Q ss_pred CchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeC------ccCcCCCcccccccCCCCCcEEe
Q 040185 313 IPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNL------SQNHLVGKIPTQIGKLEWLESLD 386 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l------~~n~~~~~~~~~l~~~~~L~~L~ 386 (458)
+|..+. ...+++|+.|++++|.+.+ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|+
T Consensus 503 lp~~~~---------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 503 LSDDFR---------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CCGGGS---------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred cChhhh---------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 555443 0135689999999999987 7888999999999999 56777888999999999999999
Q ss_pred CCCCcccccCCccccCCCCCCeeecccCcCCc
Q 040185 387 LSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 418 (458)
Q Consensus 387 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 418 (458)
+++|.+. .+|..+. ++|++|++++|++..
T Consensus 573 Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 573 IGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 9999994 7887765 899999999999874
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.9e-38 Score=326.13 Aligned_cols=398 Identities=19% Similarity=0.185 Sum_probs=204.9
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
+++++||+++|..... .+..+..+++|++|++++|.+.+..|.+++++++|++|+|++|.+++..+..|..+ +
T Consensus 25 ~~l~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL------PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-T 97 (680)
T ss_dssp TTCSEEECCSSCCCCC------CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-T
T ss_pred CCCcEEECCCCCCCCc------CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC-C
Confidence 4577777777654211 11235556677777777777776667777777777777777777765444456665 7
Q ss_pred cCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC---CCCccEEeccCCcCcCcCchhhh-cCCCCCcEEE
Q 040185 102 ALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRDFG-QKIPFLTDLD 176 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~-~~l~~L~~L~ 176 (458)
+|++|++++|.+.+..+..+ ++++|++|++++|.+.+..+.. +++|++|++++|.+++..+..+. ..+++|++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 77777777777764444444 6777777777777776655443 45677777777777644333332 1346677777
Q ss_pred ccCCCCccCCcccccCCC---------------------------CCcEEEcccCcCCCCCCCcccCCcccCCcCC--Cc
Q 040185 177 ISFNSLNGSVPKSIGNLQ---------------------------QLLTLVISNNNYMSNNSLPGEIPDSIGSLLS--VR 227 (458)
Q Consensus 177 l~~~~i~~~~~~~l~~l~---------------------------~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~--L~ 227 (458)
+++|.+.+..+..+..++ +|++|++++|. +.+..+..+..++. |+
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~------l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ------LSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC------CCEECTTTTGGGGGSCCC
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc------ccccChhHhhccCcCCCC
Confidence 777766655444444332 33344444443 33334444444332 55
Q ss_pred EEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC-----cCCc----cccCCCC
Q 040185 228 FLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-----AIPP----ELCKLSA 298 (458)
Q Consensus 228 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~----~l~~l~~ 298 (458)
+|++++|.+++..+..++.+++|++|++++|.+.+..+..+. .+++|+.|+++++...+ .+|. .+..+++
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 555555555544444555555555555555555532222222 24444444444332211 0111 2333444
Q ss_pred CCEEEcCCCcCcccCchhhccCCCCceee-----------------------------------------cccccccCEE
Q 040185 299 LHILDLSHNNLSGFIPSCVGNFSRTEYVF-----------------------------------------YSTLYLVNLM 337 (458)
Q Consensus 299 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~L~~L 337 (458)
|+.|++++|.+.+..+..+.+++.+..+. +..+++|+.|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 44444444444443333333333333222 2234455555
Q ss_pred EcccCcCCccCC-hhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccc--ccCCccccCCCCCCeeecccC
Q 040185 338 DLSSNNLSREMP-VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS--GSIPPSMVSLTFMNHLNLSYN 414 (458)
Q Consensus 338 ~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n 414 (458)
++++|.+.+..+ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence 555555543332 34445555555555555543322223333333333333333332 233444555555555555555
Q ss_pred cCCccCCC-CCCCCCCCCCc
Q 040185 415 NLSGEIPK-VNQFQSLKDPS 433 (458)
Q Consensus 415 ~l~~~~p~-~~~~~~l~~~~ 433 (458)
.+++..|. +..++.|++++
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~ 510 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILD 510 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCChhhhccccccCEEe
Confidence 55544333 23455555544
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-39 Score=336.03 Aligned_cols=350 Identities=20% Similarity=0.253 Sum_probs=238.2
Q ss_pred CCccccCCCCccEEEccCCCccc-----------------CCChhHH--hhcccCcEEecCCcccccCCCCCC-CCCCCC
Q 040185 68 FPTWLRNQTELTTLVLNNARISD-----------------TIPNWFW--QLDLALDELDVGSNELSGRIPNSL-GFRFPG 127 (458)
Q Consensus 68 ~~~~l~~~~~L~~L~L~~~~i~~-----------------~~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~ 127 (458)
+|..++++++|++|+|++|.+++ .+|..+. .+ ++|++|++++|.+.+.+|..+ ++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 66677777788888888777776 2666654 55 778888888777777777655 677788
Q ss_pred EEECcCCc-ccC-CCCC----------CCCCccEEeccCCcCcCcCch--hhhcCCCCCcEEEccCCCCccCCcccccCC
Q 040185 128 TVDLRSNR-YEG-PLPL----------WSFNVTKLYLNNNLFSGPIPR--DFGQKIPFLTDLDISFNSLNGSVPKSIGNL 193 (458)
Q Consensus 128 ~L~l~~n~-~~~-~~~~----------~l~~L~~L~L~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l 193 (458)
+|++++|+ +++ .+|. .+++|++|++++|.++ .+|. .+. .+++|++|++++|.+. .+| .+..+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCC
Confidence 88887776 665 3332 2347778888888777 6776 554 5777888888887777 666 67777
Q ss_pred CCCcEEEcccCcCCCCCCCcccCCcccCCcCC-CcEEEeecccCCCCccccccCCCC--CCEEecCCCcCCCCCchhh--
Q 040185 194 QQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS-VRFLIFCNNHISGEVPPSLKNCSM--MESLDLGDNQLSGNIPAWI-- 268 (458)
Q Consensus 194 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~-- 268 (458)
++|++|++++|. +. .+|..+..+++ |+.|++++|.++ .+|..+...+. |+.|++++|.+.+.+|...
T Consensus 595 ~~L~~L~Ls~N~------l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 595 VKLTDLKLDYNQ------IE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp SEESEEECCSSC------CS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred CcceEEECcCCc------cc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 778888887777 33 56666777777 888888887777 56666655543 7778888877765443211
Q ss_pred -hh-CCCCccEEEcccCcCCCcCCccc-cCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCC
Q 040185 269 -GE-SMPSLSILRLRSNYFNGAIPPEL-CKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLS 345 (458)
Q Consensus 269 -~~-~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 345 (458)
.. ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+. .+|..+.... ...+..+++|+.|++++|.+.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~---~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK---DGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT---TSCCTTGGGCCEEECCSSCCC
T ss_pred hccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc---cccccccCCccEEECCCCCCc
Confidence 10 1347778888887777 445443 46777888888887776 3333221110 001223457888888888876
Q ss_pred ccCChhhc--cccCCCeeeCccCcCCCcccccccCCCCCcEEeCCC------CcccccCCccccCCCCCCeeecccCcCC
Q 040185 346 REMPVELT--RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK------NKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 346 ~~~~~~l~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~------n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
.+|..+. .+++|++|++++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|++|++++|++
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 4566665 77888888888888774 677777888888888865 666667777788888888888888888
Q ss_pred ccCCCCCCCCCCCCCccccCCCC
Q 040185 418 GEIPKVNQFQSLKDPSIYAGNLA 440 (458)
Q Consensus 418 ~~~p~~~~~~~l~~~~~~~~~~~ 440 (458)
+.+|.. .++.|+.++ +.+|+.
T Consensus 819 ~~Ip~~-l~~~L~~Ld-Ls~N~l 839 (876)
T 4ecn_A 819 RKVDEK-LTPQLYILD-IADNPN 839 (876)
T ss_dssp CBCCSC-CCSSSCEEE-CCSCTT
T ss_pred CccCHh-hcCCCCEEE-CCCCCC
Confidence 566654 235777777 556643
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-38 Score=321.89 Aligned_cols=402 Identities=20% Similarity=0.168 Sum_probs=256.0
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
+++++||+++|.... ..+..+..+++|++|++++|.+.+..|.+|+++++|++|+|++|.+++..|..|..+ +
T Consensus 32 ~~l~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI------LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL-T 104 (606)
T ss_dssp TTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC-T
T ss_pred CCcCEEECCCCCcCE------eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc-c
Confidence 568888888876431 122356777888888888888886667788888888888888888887778888777 8
Q ss_pred cCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccC-CCCCC---CCCccEEeccCCcCcCcCchhhhcCCCC----C
Q 040185 102 ALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEG-PLPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPF----L 172 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~-~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~----L 172 (458)
+|++|++++|.+.+..+..+ ++++|++|++++|.+.+ .+|.. +++|++|++++|.+++..+..+. .+++ +
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l 183 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVN 183 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCTTCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh-hhhcccccc
Confidence 88888888888875544444 78888888888888875 34543 56888888888888754444443 2433 3
Q ss_pred cEEEccCCCCccCCcccccCCCCCcEEEcccCcCC---------------------------------------------
Q 040185 173 TDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYM--------------------------------------------- 207 (458)
Q Consensus 173 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~--------------------------------------------- 207 (458)
++|++++|.+....+..+. ..+|++|++++|.+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 4788888877744444333 337777777777531
Q ss_pred -------CCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchh-------------
Q 040185 208 -------SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAW------------- 267 (458)
Q Consensus 208 -------~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------------- 267 (458)
..+.+.+..+. +..+++|+.|+++++.+. .+| .+..+++|+.|++++|.+. .+|..
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESC
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCC
Confidence 22222333333 455566666666666665 333 5555666666666666663 55522
Q ss_pred ------hhhCCCCccEEEcccCcCCCc--CCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceee------------
Q 040185 268 ------IGESMPSLSILRLRSNYFNGA--IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVF------------ 327 (458)
Q Consensus 268 ------~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~------------ 327 (458)
....+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+ .|..+..++.+..+.
T Consensus 339 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp SSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred cCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccCh
Confidence 001244444555554444432 24445555666666666665543 233444444333222
Q ss_pred --cccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCC-cccccccCCCCCcEEeCCCCcccccCCccccCCC
Q 040185 328 --YSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVG-KIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLT 404 (458)
Q Consensus 328 --~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~ 404 (458)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 2345566777777777666666666777777777777777665 2566667777777777777777766666677777
Q ss_pred CCCeeecccCcCCccCCC-CCCCCCCCCCccccCC
Q 040185 405 FMNHLNLSYNNLSGEIPK-VNQFQSLKDPSIYAGN 438 (458)
Q Consensus 405 ~L~~L~l~~n~l~~~~p~-~~~~~~l~~~~~~~~~ 438 (458)
+|++|++++|++++.+|. ++.++.|++++ +.+|
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-l~~N 531 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLD-CSFN 531 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEE-CTTS
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEE-CCCC
Confidence 777777777777766443 35567777766 4444
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-39 Score=327.44 Aligned_cols=404 Identities=15% Similarity=0.143 Sum_probs=251.9
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
+++++||+++|.... ..+..+..+++|++|++++|.+.+..+.+++++++|++|++++|.+++..+..+..+ +
T Consensus 26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL-S 98 (549)
T ss_dssp TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC-T
T ss_pred CCccEEECcCCccCc------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC-C
Confidence 579999999987431 124467788899999999999987777889999999999999999987777778777 8
Q ss_pred cCcEEecCCcccccC-CCCCC-CCCCCCEEECcCCcccCCCC----CCCCCccEEeccCCcCcCcCchhhhcCCCCCcEE
Q 040185 102 ALDELDVGSNELSGR-IPNSL-GFRFPGTVDLRSNRYEGPLP----LWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDL 175 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 175 (458)
+|++|++++|.+++. .+..+ ++++|++|++++|.+.+.++ ..+++|++|++++|.+++..+..+. .+++|++|
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceE
Confidence 999999999999852 33444 78999999999998544433 2266889999999998876777665 47788888
Q ss_pred EccCCCCccCCccc-ccCCCCCcEEEcccCcCCCCCC---------------------Cccc----CCcccCCcCCCcEE
Q 040185 176 DISFNSLNGSVPKS-IGNLQQLLTLVISNNNYMSNNS---------------------LPGE----IPDSIGSLLSVRFL 229 (458)
Q Consensus 176 ~l~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~---------------------~~~~----~~~~~~~l~~L~~L 229 (458)
++++|.+. ..+.. +..+++|++|++++|.+..... +.+. .+..+..+++|+.+
T Consensus 178 ~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 178 TLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred ecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 88877765 33332 3457778888887777422100 0000 00001112223333
Q ss_pred EeecccCCCC-----------------------------------ccccccCCCCCCEEecCCCcCCCCCchhhhhCCCC
Q 040185 230 IFCNNHISGE-----------------------------------VPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPS 274 (458)
Q Consensus 230 ~l~~~~l~~~-----------------------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 274 (458)
++++|.+.+. .+..+...++|+.|++++|.+. .+|..++..+++
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~ 335 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTT
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcc
Confidence 3333322210 0000111234556666666655 566655444666
Q ss_pred ccEEEcccCcCCCcCC---ccccCCCCCCEEEcCCCcCcccCc--hhhccCCCCceee------------cccccccCEE
Q 040185 275 LSILRLRSNYFNGAIP---PELCKLSALHILDLSHNNLSGFIP--SCVGNFSRTEYVF------------YSTLYLVNLM 337 (458)
Q Consensus 275 L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~~~~~~------------~~~~~~L~~L 337 (458)
|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+ ..+..++.+..+. +..+++|++|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEE
Confidence 6666666666654332 224556666666666666653321 1222222111111 1123345555
Q ss_pred EcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 338 DLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 338 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
++++|.+.+. +..+ .++|++|++++|++++. ...+++|++|++++|+++ .+|. ...+++|++|++++|+++
T Consensus 416 ~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 416 NLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCcccc-cchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 5555554321 1111 13555555555555432 246788999999999888 6665 467889999999999999
Q ss_pred ccCCC-CCCCCCCCCCccccCCCCCcCCCCCCCCC
Q 040185 418 GEIPK-VNQFQSLKDPSIYAGNLALCGDPLPKRCS 451 (458)
Q Consensus 418 ~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~c~ 451 (458)
+.+|. +..++.|+.++ +.+| ||.|.|.
T Consensus 487 ~~~~~~~~~l~~L~~L~-l~~N------~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIW-LHTN------PWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEE-CCSS------CBCCCHH
T ss_pred CcCHHHHhcCcccCEEE-ecCC------CccCCCc
Confidence 87776 46788888777 4454 5566664
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-37 Score=308.08 Aligned_cols=356 Identities=17% Similarity=0.136 Sum_probs=295.0
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCC-ChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEE
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTI-PNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTV 129 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L 129 (458)
++|++|++++|.+.+..+..++++++|++|++++|.+.+.+ +..|..+ ++|++|++++|.+++..+..+ ++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc-ccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 68999999999998777889999999999999999987554 5567776 999999999999997767766 79999999
Q ss_pred ECcCCcccCCC-----CCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCC--CCCcEEEcc
Q 040185 130 DLRSNRYEGPL-----PLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNL--QQLLTLVIS 202 (458)
Q Consensus 130 ~l~~n~~~~~~-----~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l--~~L~~L~L~ 202 (458)
++++|++++.. ...+++|++|++++|.+++..|..++..+++|++|++++|.+.+..+..+..+ .+++.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998633 23367999999999999877677755679999999999999987777777766 789999999
Q ss_pred cCcCCCCCCCcccCCc--------ccCCcCCCcEEEeecccCCCCccccccCC---CCCCEEecCCCcCCCCCc------
Q 040185 203 NNNYMSNNSLPGEIPD--------SIGSLLSVRFLIFCNNHISGEVPPSLKNC---SMMESLDLGDNQLSGNIP------ 265 (458)
Q Consensus 203 ~~~~~~~~~~~~~~~~--------~~~~l~~L~~L~l~~~~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~------ 265 (458)
+|.+ ....+. .+..+++|++|++++|.+++..+..+... ++|+.|++++|...+...
T Consensus 189 ~n~l------~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 189 SITL------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp TCBC------TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cCcc------cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 9984 322222 23356789999999999987777665443 889999999886542210
Q ss_pred ----hhhh-hCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcc
Q 040185 266 ----AWIG-ESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLS 340 (458)
Q Consensus 266 ----~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 340 (458)
..+. -..++|+++++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.. +++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------l~~L~~L~Ls 331 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-----------LTHLLKLNLS 331 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----------CTTCCEEECC
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----------cccCCEEECC
Confidence 0111 01468999999999999888888999999999999999998777766654 4589999999
Q ss_pred cCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccC
Q 040185 341 SNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEI 420 (458)
Q Consensus 341 ~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 420 (458)
+|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 99998888888999999999999999999777888999999999999999999666667889999999999999999988
Q ss_pred CCCCC
Q 040185 421 PKVNQ 425 (458)
Q Consensus 421 p~~~~ 425 (458)
|....
T Consensus 412 ~~~~~ 416 (455)
T 3v47_A 412 PRIDY 416 (455)
T ss_dssp TTTHH
T ss_pred CcchH
Confidence 86543
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-38 Score=319.29 Aligned_cols=395 Identities=19% Similarity=0.167 Sum_probs=283.7
Q ss_pred hccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhh
Q 040185 20 ILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQL 99 (458)
Q Consensus 20 ~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~ 99 (458)
.+...+++|++++... .+|..+. +++++|++++|.+.+..+..++++++|++|+|++|.+++..|..|..+
T Consensus 29 ~~~~~~~l~ls~~~L~-------~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-------HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTSCCC-------SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCCCCc-------cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 3445578999988654 3454443 699999999999987777899999999999999999998888888887
Q ss_pred cccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCC-CCCC---CCCccEEeccCCcCcCcCchhhhcCCCCC--c
Q 040185 100 DLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGP-LPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFL--T 173 (458)
Q Consensus 100 ~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L--~ 173 (458)
++|++|++++|.++ .++.. .+++|++|++++|++.+. .|.. +++|++|++++|.+++. .+. .+++| +
T Consensus 100 -~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~-~l~~L~L~ 172 (562)
T 3a79_B 100 -QDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL-PVAHLHLS 172 (562)
T ss_dssp -TTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG-GGTTSCEE
T ss_pred -CCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh-hhhhceee
Confidence 89999999999998 56665 899999999999999863 3333 67999999999998743 222 35555 9
Q ss_pred EEEccCCCC--ccCCcccccC--------------------------CCCCcEEEcccCcCC------------------
Q 040185 174 DLDISFNSL--NGSVPKSIGN--------------------------LQQLLTLVISNNNYM------------------ 207 (458)
Q Consensus 174 ~L~l~~~~i--~~~~~~~l~~--------------------------l~~L~~L~L~~~~~~------------------ 207 (458)
+|++++|.+ .+..+..+.. +++|+.+++++|...
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999999988 5555554443 345566665554200
Q ss_pred ----CCCCCcc----cCCcccCCcCCCcEEEeecccCCCCccccc-----cCC--------------------------C
Q 040185 208 ----SNNSLPG----EIPDSIGSLLSVRFLIFCNNHISGEVPPSL-----KNC--------------------------S 248 (458)
Q Consensus 208 ----~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l-----~~l--------------------------~ 248 (458)
..+.+.+ ..+.. ....+|++|++++|.+++.+|..+ ..+ .
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 0000000 00000 012367777777777766555444 222 3
Q ss_pred CCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccC--chhhccCCCCcee
Q 040185 249 MMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFI--PSCVGNFSRTEYV 326 (458)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~ 326 (458)
+|+.|++++|.+. ..+ +...+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.. |..+.
T Consensus 332 ~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------- 400 (562)
T 3a79_B 332 NIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-------- 400 (562)
T ss_dssp CCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT--------
T ss_pred cceEEEccCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc--------
Confidence 4666666666665 222 1134788999999999998878888889999999999999887532 22233
Q ss_pred ecccccccCEEEcccCcCCccCC-hhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCC
Q 040185 327 FYSTLYLVNLMDLSSNNLSREMP-VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTF 405 (458)
Q Consensus 327 ~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 405 (458)
.+++|+.|++++|.+.+.++ ..+..+++|++|++++|++++.++..+. ++|+.|++++|+++ .+|..+..+++
T Consensus 401 ---~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 401 ---NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp ---TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred ---CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 45689999999999987444 4577889999999999999876665544 68999999999998 77877779999
Q ss_pred CCeeecccCcCCccCCC-CCCCCCCCCCccccCCCCCcCCCCCCCCCCCCC
Q 040185 406 MNHLNLSYNNLSGEIPK-VNQFQSLKDPSIYAGNLALCGDPLPKRCSEIDG 455 (458)
Q Consensus 406 L~~L~l~~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~~~ 455 (458)
|++|++++|++++..+. +..++.|+.++ + .+|||.|.|...|+
T Consensus 475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~-l------~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 475 LQELNVASNQLKSVPDGVFDRLTSLQYIW-L------HDNPWDCTCPGIRY 518 (562)
T ss_dssp CSEEECCSSCCCCCCTTSTTTCTTCCCEE-C------CSCCBCCCHHHHHH
T ss_pred CCEEECCCCCCCCCCHHHHhcCCCCCEEE-e------cCCCcCCCcchHHH
Confidence 99999999999954444 56777777766 4 44567777766555
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-37 Score=325.87 Aligned_cols=347 Identities=20% Similarity=0.241 Sum_probs=293.9
Q ss_pred CCCCCCCCCcccEEEccCCCCCC-----------------CCCcccc--CCCCccEEEccCCCcccCCChhHHhhcccCc
Q 040185 44 LDSHWIPPFKLTFIKIRSCQPGP-----------------KFPTWLR--NQTELTTLVLNNARISDTIPNWFWQLDLALD 104 (458)
Q Consensus 44 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~l~--~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~ 104 (458)
+|..+..+++|++|+|++|.+.+ .+|..++ ++++|++|+|++|.+.+.+|..+..+ ++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-SSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-CCCC
Confidence 67778889999999999999987 3888887 99999999999999999999999988 9999
Q ss_pred EEecCCcc-ccc-CCCCC--------CCCCCCCEEECcCCcccCCCCC-----CCCCccEEeccCCcCcCcCchhhhcCC
Q 040185 105 ELDVGSNE-LSG-RIPNS--------LGFRFPGTVDLRSNRYEGPLPL-----WSFNVTKLYLNNNLFSGPIPRDFGQKI 169 (458)
Q Consensus 105 ~L~L~~~~-l~~-~~~~~--------~~~~~L~~L~l~~n~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~~~~~~l 169 (458)
+|++++|+ +++ .+|.. ..+++|++|++++|.+. .+|. .+++|++|++++|.++ .+| .+. .+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc-CC
Confidence 99999998 876 45532 24679999999999999 5666 3679999999999998 888 554 69
Q ss_pred CCCcEEEccCCCCccCCcccccCCCC-CcEEEcccCcCCCCCCCcccCCcccCCcC--CCcEEEeecccCCCCcccc---
Q 040185 170 PFLTDLDISFNSLNGSVPKSIGNLQQ-LLTLVISNNNYMSNNSLPGEIPDSIGSLL--SVRFLIFCNNHISGEVPPS--- 243 (458)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~--- 243 (458)
++|++|++++|.+. .+|..+..+++ |++|++++|. +. .+|..+.... +|+.|++++|.+.+..|..
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~------L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK------LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC------CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCC------CC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 99999999999998 88888999999 9999999999 44 5677776654 4999999999998765532
Q ss_pred cc--CCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCC--------CCCCEEEcCCCcCcccC
Q 040185 244 LK--NCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKL--------SALHILDLSHNNLSGFI 313 (458)
Q Consensus 244 l~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--------~~L~~L~l~~n~l~~~~ 313 (458)
+. .+++|+.|++++|.+. .+|..++..+++|+.|++++|.+. .+|..+... ++|+.|++++|.+. .+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 22 3458999999999999 899988877999999999999998 555544332 38999999999998 55
Q ss_pred chhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCcc------CcCCCcccccccCCCCCcEEeC
Q 040185 314 PSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQ------NHLVGKIPTQIGKLEWLESLDL 387 (458)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~------n~~~~~~~~~l~~~~~L~~L~L 387 (458)
|..+. ...+++|+.|++++|.+.+ +|..+..+++|++|++++ |.+.+.+|..+..+++|+.|+|
T Consensus 744 p~~l~---------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 744 SDDFR---------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CGGGS---------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred hHHhh---------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 55443 0145689999999999987 688889999999999976 7777789999999999999999
Q ss_pred CCCcccccCCccccCCCCCCeeecccCcCCcc
Q 040185 388 SKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGE 419 (458)
Q Consensus 388 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 419 (458)
++|.+ +.+|..+. ++|+.|+|++|++...
T Consensus 814 s~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 814 GSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 99999 58888765 6999999999998753
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=308.67 Aligned_cols=368 Identities=19% Similarity=0.180 Sum_probs=296.9
Q ss_pred cEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCC-CCCC-CCCCCCEEECc
Q 040185 55 TFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRI-PNSL-GFRFPGTVDLR 132 (458)
Q Consensus 55 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~~-~~~~L~~L~l~ 132 (458)
+.++.+++.+. .+|. + .++|++|+|++|.+++..|..+..+ ++|++|++++|.+.+.+ +..+ ++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45666666665 5565 2 2799999999999998888888887 99999999999987554 3444 79999999999
Q ss_pred CCcccCCCCCC---CCCccEEeccCCcCcCcCchh-hhcCCCCCcEEEccCCCCccCCccc-ccCCCCCcEEEcccCcCC
Q 040185 133 SNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRD-FGQKIPFLTDLDISFNSLNGSVPKS-IGNLQQLLTLVISNNNYM 207 (458)
Q Consensus 133 ~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~~ 207 (458)
+|++.+..|.. +++|++|++++|.+++..+.. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-- 165 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-- 165 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC--
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc--
Confidence 99998776554 669999999999998644443 2346999999999999998776765 7899999999999999
Q ss_pred CCCCCcccCCcccCCc--CCCcEEEeecccCCCCcccc--------ccCCCCCCEEecCCCcCCCCCchhhhhC--CCCc
Q 040185 208 SNNSLPGEIPDSIGSL--LSVRFLIFCNNHISGEVPPS--------LKNCSMMESLDLGDNQLSGNIPAWIGES--MPSL 275 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L 275 (458)
+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... .+++
T Consensus 166 ----l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 166 ----VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp ----BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred ----ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 556666666665 68999999999988544332 3356889999999999987777666542 3889
Q ss_pred cEEEcccCcCCCcC----------Ccccc--CCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCc
Q 040185 276 SILRLRSNYFNGAI----------PPELC--KLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNN 343 (458)
Q Consensus 276 ~~L~l~~~~~~~~~----------~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 343 (458)
+.+++++|...+.. +..+. ..++|+.|++++|.+.+..+..+.. +++|+.|++++|.
T Consensus 242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-----------FTDLEQLTLAQNE 310 (455)
T ss_dssp EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------CTTCCEEECTTSC
T ss_pred eeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------CCCCCEEECCCCc
Confidence 99999988654321 11122 2368999999999999877766655 4589999999999
Q ss_pred CCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC
Q 040185 344 LSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV 423 (458)
Q Consensus 344 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 423 (458)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..
T Consensus 311 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence 99888889999999999999999998777888999999999999999999888999999999999999999999755543
Q ss_pred -CCCCCCCCCccccCCCCCcCCCCCCCCC
Q 040185 424 -NQFQSLKDPSIYAGNLALCGDPLPKRCS 451 (458)
Q Consensus 424 -~~~~~l~~~~~~~~~~~~~~~~~~~~c~ 451 (458)
..+++|+.++ +.+ +|+.|.|.
T Consensus 391 ~~~l~~L~~L~-l~~------N~l~~~~~ 412 (455)
T 3v47_A 391 FDRLTSLQKIW-LHT------NPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEE-CCS------SCBCCCTT
T ss_pred hccCCcccEEE-ccC------CCcccCCC
Confidence 5788888877 444 46666665
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=308.55 Aligned_cols=383 Identities=19% Similarity=0.165 Sum_probs=251.5
Q ss_pred HHHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCccc-CCChh
Q 040185 17 WKKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISD-TIPNW 95 (458)
Q Consensus 17 ~~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~-~~~~~ 95 (458)
....+++|++|++++|.... ..+..+..+++|++|++++|.+....+..++++++|++|++++|.+++ .+|..
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~ 144 (570)
T 2z63_A 71 AYQSLSHLSTLILTGNPIQS------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (570)
T ss_dssp TTTTCTTCCEEECTTCCCCE------ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred cccCchhCCEEeCcCCcCCc------cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh
Confidence 34567889999999986431 112346677788888888888775444467888888888888888876 35777
Q ss_pred HHhhcccCcEEecCCcccccCCCCCC-CCCCC----CEEECcCCcccCCCCCCCC--CccEEeccCC-------------
Q 040185 96 FWQLDLALDELDVGSNELSGRIPNSL-GFRFP----GTVDLRSNRYEGPLPLWSF--NVTKLYLNNN------------- 155 (458)
Q Consensus 96 ~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L----~~L~l~~n~~~~~~~~~l~--~L~~L~L~~~------------- 155 (458)
+.++ ++|++|++++|.+++..+..+ .+++| +++++++|.+.+..+..+. +|++|++++|
T Consensus 145 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 223 (570)
T 2z63_A 145 FSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223 (570)
T ss_dssp GGGC-TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHT
T ss_pred hccc-CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcC
Confidence 7776 788888888888875544444 34455 6777777777655444332 4555555544
Q ss_pred ---------------------------------------------cCcCcCchhhhcCCCCCcEEEccCCCCccCCcccc
Q 040185 156 ---------------------------------------------LFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI 190 (458)
Q Consensus 156 ---------------------------------------------~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l 190 (458)
.+.+..+..+. .+++|++|++++|.+. .+|..+
T Consensus 224 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~ 301 (570)
T 2z63_A 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFS 301 (570)
T ss_dssp TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCC
T ss_pred ccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhh
Confidence 12222233332 3667777777777766 455556
Q ss_pred cCCCCCcEEEcccCcCCCC---------------CCCcccCCcccCCcCCCcEEEeecccCCCCc--cccccCCCCCCEE
Q 040185 191 GNLQQLLTLVISNNNYMSN---------------NSLPGEIPDSIGSLLSVRFLIFCNNHISGEV--PPSLKNCSMMESL 253 (458)
Q Consensus 191 ~~l~~L~~L~L~~~~~~~~---------------~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L 253 (458)
..+ +|++|++++|.+..- +......+. ..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 302 ~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp SCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred ccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence 655 677777766663100 001111111 33445555555555544321 3344455555555
Q ss_pred ecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCC-ccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeeccccc
Q 040185 254 DLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIP-PELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLY 332 (458)
Q Consensus 254 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
++++|.+. .++..+. .+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+ ..++
T Consensus 379 ~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~l~ 445 (570)
T 2z63_A 379 DLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-----------NGLS 445 (570)
T ss_dssp ECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT-----------TTCT
T ss_pred ECCCCccc-ccccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh-----------hcCC
Confidence 55555554 3333322 25555555555555554333 244555556666666665554444333 3456
Q ss_pred ccCEEEcccCcCC-ccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeec
Q 040185 333 LVNLMDLSSNNLS-REMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNL 411 (458)
Q Consensus 333 ~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 411 (458)
+|+.|++++|.+. +..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+.++++|++|++
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 8999999999997 467888999999999999999999777889999999999999999999777778999999999999
Q ss_pred ccCcCCccCCCCC
Q 040185 412 SYNNLSGEIPKVN 424 (458)
Q Consensus 412 ~~n~l~~~~p~~~ 424 (458)
++|++.+..|...
T Consensus 526 ~~N~~~~~~~~~~ 538 (570)
T 2z63_A 526 HTNPWDCSCPRID 538 (570)
T ss_dssp CSSCBCCCTTTTH
T ss_pred cCCcccCCCcchH
Confidence 9999998887653
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-36 Score=314.28 Aligned_cols=205 Identities=24% Similarity=0.260 Sum_probs=147.5
Q ss_pred cCCCCCCEEecCCCcCCC--CCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCc-hhhccCC
Q 040185 245 KNCSMMESLDLGDNQLSG--NIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIP-SCVGNFS 321 (458)
Q Consensus 245 ~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 321 (458)
..+++|+.++++.|.+.. ..+..... ..+++.+++..+.... .+..+..+++|+.++++++......+ ..+..+.
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccchhhccccccccccccchhh-hhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccc
Confidence 357889999999887752 23333333 6677777776665542 23345555566666665554443322 1222222
Q ss_pred CCcee-------------ecccccccCEEEcccCcCC-ccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeC
Q 040185 322 RTEYV-------------FYSTLYLVNLMDLSSNNLS-REMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDL 387 (458)
Q Consensus 322 ~~~~~-------------~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L 387 (458)
.+... .+...+.++.|++++|.+. ...|..+..+++|++|++++|++.+..|..+..+++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 22111 1334668999999999753 446778889999999999999999777889999999999999
Q ss_pred CCCcccccCCccccCCCCCCeeecccCcCCccCCCC-CCC-CCCCCCccccCCCCCcCCCCCCCCCCCCCCCC
Q 040185 388 SKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV-NQF-QSLKDPSIYAGNLALCGDPLPKRCSEIDGTSW 458 (458)
Q Consensus 388 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~-~~l~~~~~~~~~~~~~~~~~~~~c~~~~~~~w 458 (458)
++|++++..+..+..+++|++|++++|++++.+|.. ..+ ++|+.++ +.+|||.|+|...||.+|
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~-------L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN-------LTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE-------CTTCCBCCSGGGHHHHHH
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE-------eeCCCCcccCCcHHHHHH
Confidence 999999877888999999999999999999887764 334 5676665 566789999999998877
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=315.88 Aligned_cols=380 Identities=19% Similarity=0.130 Sum_probs=276.5
Q ss_pred CCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCC-ChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCC
Q 040185 50 PPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTI-PNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPG 127 (458)
Q Consensus 50 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~ 127 (458)
-++++++|+|++|.+.+..+..++++++|++|+|++|...+.+ |..|..+ ++|++|+|++|.+.+..+..+ ++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcccC
Confidence 3469999999999998777889999999999999999654444 7778877 999999999999997777777 799999
Q ss_pred EEECcCCcccCCCCC-----CCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCC--CCCcEEE
Q 040185 128 TVDLRSNRYEGPLPL-----WSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNL--QQLLTLV 200 (458)
Q Consensus 128 ~L~l~~n~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l--~~L~~L~ 200 (458)
+|++++|.+.+..+. .+++|++|++++|.+++..+...+.++++|++|++++|.+.+..+..+..+ ++|++|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999999999875433 367999999999999865554444579999999999999987788888777 8999999
Q ss_pred cccCcCCCCCCCcccCCcccCCc---------------------------------------------------------
Q 040185 201 ISNNNYMSNNSLPGEIPDSIGSL--------------------------------------------------------- 223 (458)
Q Consensus 201 L~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------------------- 223 (458)
+++|.+. +..+..+..+
T Consensus 181 L~~n~l~------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 181 LAANSLY------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp ECCSBSC------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred CCCCccc------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 9999842 2222221111
Q ss_pred -----------CCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCcc
Q 040185 224 -----------LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPE 292 (458)
Q Consensus 224 -----------~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 292 (458)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ .++++|++|++++|.+.+..+..
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCS
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHH
Confidence 456666666666665555666667777777777777763333333 33777777777777776666667
Q ss_pred ccCCCCCCEEEcCCCcCcccCchhhccCCCCceeeccc--------ccccCEEEcccCcCCccC----------------
Q 040185 293 LCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYST--------LYLVNLMDLSSNNLSREM---------------- 348 (458)
Q Consensus 293 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~l~~~~---------------- 348 (458)
+..+++|+.|++++|.+....+..+..++.+..+.+.. +++|+.+++++|.+....
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 77777777777777777666555566666555444332 335555555555543211
Q ss_pred -----ChhhccccCCCeeeCccCcCCCcccc-cccCCCCCcEEeCCCCcccc-----cCCccccCCCCCCeeecccCcCC
Q 040185 349 -----PVELTRLIHLGTLNLSQNHLVGKIPT-QIGKLEWLESLDLSKNKLSG-----SIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 349 -----~~~l~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~L~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 11133567788888888877643222 34556788888888887762 33456788999999999999999
Q ss_pred ccCCCC-CCCCCCCCCccccCC
Q 040185 418 GEIPKV-NQFQSLKDPSIYAGN 438 (458)
Q Consensus 418 ~~~p~~-~~~~~l~~~~~~~~~ 438 (458)
+.+|.. ..++.|++++ +.+|
T Consensus 494 ~~~~~~~~~l~~L~~L~-Ls~N 514 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLS-LNSN 514 (844)
T ss_dssp TCCTTSSSSCCSCSEEE-EESC
T ss_pred ccChhHccchhhhheeE-CCCC
Confidence 877764 6799999998 6666
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-36 Score=305.65 Aligned_cols=376 Identities=17% Similarity=0.179 Sum_probs=255.1
Q ss_pred HHHHhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccC-CCh
Q 040185 16 EWKKILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDT-IPN 94 (458)
Q Consensus 16 ~~~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~-~~~ 94 (458)
.....+++|++|++++|.... ..+..+..+++|++|++++|.+.+..+.+++++++|++|++++|.+++. .|.
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred hhhhcCCcccEEECCCCCcCc------cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 345678899999999987531 2234577889999999999999977777799999999999999999863 456
Q ss_pred hHHhhcccCcEEecCCcccccCCC-CCC-CCCCCCEEECcCCcccCCCCCC---CCCccEEeccCCcCcCcCchhhhcCC
Q 040185 95 WFWQLDLALDELDVGSNELSGRIP-NSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRDFGQKI 169 (458)
Q Consensus 95 ~~~~~~~~L~~L~L~~~~l~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l 169 (458)
.+..+ ++|++|++++|.+.+.++ ..+ ++++|++|++++|++.+..|.. +++|++|++++|.+. .++..+...+
T Consensus 118 ~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l 195 (549)
T 2z81_A 118 LFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL 195 (549)
T ss_dssp SCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHST
T ss_pred hhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhc
Confidence 67776 899999999998544554 334 7899999999999998766655 446778888888775 5566655567
Q ss_pred CCCcEEEccCCCCccCC--cc-c----------------------------ccCCCCCcEEEcccCcCCCCCC-------
Q 040185 170 PFLTDLDISFNSLNGSV--PK-S----------------------------IGNLQQLLTLVISNNNYMSNNS------- 211 (458)
Q Consensus 170 ~~L~~L~l~~~~i~~~~--~~-~----------------------------l~~l~~L~~L~L~~~~~~~~~~------- 211 (458)
++|++|++++|.+.+.. +. . +..+++|+.+++++|.+.....
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 88888888888776421 10 0 1122333333333333111000
Q ss_pred ----------------------------------------------CcccCCccc-CCcCCCcEEEeecccCCCCcc---
Q 040185 212 ----------------------------------------------LPGEIPDSI-GSLLSVRFLIFCNNHISGEVP--- 241 (458)
Q Consensus 212 ----------------------------------------------~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~--- 241 (458)
+. .+|..+ ..+++|++|++++|.+++..|
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 354 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccch
Confidence 10 122222 234555555555555554332
Q ss_pred ccccCCCCCCEEecCCCcCCCCCch--hhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhcc
Q 040185 242 PSLKNCSMMESLDLGDNQLSGNIPA--WIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGN 319 (458)
Q Consensus 242 ~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 319 (458)
..++.+++|++|++++|.+. .++. .....+++|++|++++|.+. .+|..+..+++|+.|++++|++... +..
T Consensus 355 ~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~--- 428 (549)
T 2z81_A 355 ACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTC--- 428 (549)
T ss_dssp TCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTT---
T ss_pred hhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cch---
Confidence 12444555555555555554 3321 12223555556666555555 3455555555566666665555421 111
Q ss_pred CCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCcc
Q 040185 320 FSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPS 399 (458)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~ 399 (458)
..++|+.|++++|.+++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..+..
T Consensus 429 ----------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 429 ----------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp ----------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred ----------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence 1258999999999997643 57889999999999998 6776 467899999999999999877888
Q ss_pred ccCCCCCCeeecccCcCCccCCC
Q 040185 400 MVSLTFMNHLNLSYNNLSGEIPK 422 (458)
Q Consensus 400 l~~l~~L~~L~l~~n~l~~~~p~ 422 (458)
+..+++|++|++++|++.+..|.
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHHH
T ss_pred HhcCcccCEEEecCCCccCCCcc
Confidence 99999999999999999877764
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=302.51 Aligned_cols=364 Identities=21% Similarity=0.198 Sum_probs=256.9
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
+++++||+++|..... .+..+..+++|++|++++|.+.+..|.+++++++|++|+|++|+++ .+|.. .+ +
T Consensus 21 ~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l-~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISEL------WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PT-V 90 (520)
T ss_dssp TTCSEEECCSSCCCCC------CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CC-C
T ss_pred ccccEEECCCCccccc------ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--cc-C
Confidence 6788888888764311 1224566778888888888888666788888888888888888887 45554 44 7
Q ss_pred cCcEEecCCccccc-CCCCCC-CCCCCCEEECcCCcccCCCCCCCCCc--cEEeccCCcC--cCcCchhhhc--------
Q 040185 102 ALDELDVGSNELSG-RIPNSL-GFRFPGTVDLRSNRYEGPLPLWSFNV--TKLYLNNNLF--SGPIPRDFGQ-------- 167 (458)
Q Consensus 102 ~L~~L~L~~~~l~~-~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~L--~~L~L~~~~~--~~~~~~~~~~-------- 167 (458)
+|++|++++|.+++ ..|..+ ++++|++|++++|++.+.....+++| ++|++++|.+ .+..|..+..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 88888888888875 345555 68888888888888776444445566 7888877776 4333333321
Q ss_pred -----------------CCCCCcE--------------------------------------------------------
Q 040185 168 -----------------KIPFLTD-------------------------------------------------------- 174 (458)
Q Consensus 168 -----------------~l~~L~~-------------------------------------------------------- 174 (458)
.+++|+.
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 1233333
Q ss_pred -EEccCCCCccCCcccc-----cCCCCCcEEEcccCcCCCCCCCcccCC-cccCCc---CCCcEEEeecccCCCCccccc
Q 040185 175 -LDISFNSLNGSVPKSI-----GNLQQLLTLVISNNNYMSNNSLPGEIP-DSIGSL---LSVRFLIFCNNHISGEVPPSL 244 (458)
Q Consensus 175 -L~l~~~~i~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~~~~~~~~-~~~~~l---~~L~~L~l~~~~l~~~~~~~l 244 (458)
|++++|.+.+.+|..+ ..+++|+.+++++|. + .+| ..+..+ .+|+.|++++|.+.... .+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~------~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~ 320 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV------F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CP 320 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC------C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccc------e--ecchhhhhcccccCceeEEEcCCCcccccc--ch
Confidence 3333333333333333 333444444444333 1 111 111111 34666666666654221 12
Q ss_pred cCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC--cCCccccCCCCCCEEEcCCCcCcccCchhhccCCC
Q 040185 245 KNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG--AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR 322 (458)
Q Consensus 245 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 322 (458)
..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+.+|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------ 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC------
T ss_pred hhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc------
Confidence 68899999999999999767777755 9999999999999986 45567899999999999999998645532
Q ss_pred CceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCcc-cc
Q 040185 323 TEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPS-MV 401 (458)
Q Consensus 323 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-l~ 401 (458)
.+..+++|+.|++++|.+++..+..+. ++|++|++++|++. .+|..+..+++|++|++++|+++ .+|.. +.
T Consensus 394 ----~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 465 (520)
T 2z7x_B 394 ----DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465 (520)
T ss_dssp ----SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ----hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhc
Confidence 122456899999999999877666554 79999999999999 88988889999999999999999 56665 88
Q ss_pred CCCCCCeeecccCcCCccC
Q 040185 402 SLTFMNHLNLSYNNLSGEI 420 (458)
Q Consensus 402 ~l~~L~~L~l~~n~l~~~~ 420 (458)
.+++|++|++++|++....
T Consensus 466 ~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCTTCCEEECCSSCBCCCH
T ss_pred cCCcccEEECcCCCCcccC
Confidence 9999999999999998643
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=290.01 Aligned_cols=301 Identities=21% Similarity=0.173 Sum_probs=205.5
Q ss_pred cccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEEC
Q 040185 53 KLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDL 131 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l 131 (458)
++++|+|++|.+.+..+..|+++++|++|+|++|.+++..|..|..+ ++|++|++++|.+++..+..+ ++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l-------- 103 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGL-------- 103 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCSCCTTSSTTC--------
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC-ccCCEEECCCCcCCccCcccccCC--------
Confidence 55555555555554444455555555555555555554445545444 555555555555542222222 23
Q ss_pred cCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCC
Q 040185 132 RSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNS 211 (458)
Q Consensus 132 ~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 211 (458)
++|++|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 104 -------------~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------ 163 (477)
T 2id5_A 104 -------------SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN------ 163 (477)
T ss_dssp -------------TTCCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC------
T ss_pred -------------CCCCEEECCCCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc------
Confidence 3455555555555433343443 58888999999888887777788888888999888887
Q ss_pred CcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCc
Q 040185 212 LPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPP 291 (458)
Q Consensus 212 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 291 (458)
+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++..... ..+|+.|++++|.+....+.
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHH
Confidence 44444556778888888888888888766667888888888888888777677766665 55888888888888854445
Q ss_pred cccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCc
Q 040185 292 ELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGK 371 (458)
Q Consensus 292 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~ 371 (458)
.+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.++..
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHE-----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTT-----------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred HhcCccccCeeECCCCcCCccChhhccc-----------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence 6788888888888888877555444433 44688888888888777777777788888888888887755
Q ss_pred ccccccCCCCCcEEeCCCCcccc
Q 040185 372 IPTQIGKLEWLESLDLSKNKLSG 394 (458)
Q Consensus 372 ~~~~l~~~~~L~~L~L~~n~~~~ 394 (458)
.+..+..+++|+.|++++|.+..
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSCEEC
T ss_pred CHhHcCCCcccCEEEccCCCccC
Confidence 55566777788888888887763
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-33 Score=280.25 Aligned_cols=345 Identities=24% Similarity=0.334 Sum_probs=275.9
Q ss_pred ccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhc
Q 040185 21 LISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLD 100 (458)
Q Consensus 21 ~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~ 100 (458)
+.+++.|+++++... .++ .+..+++|++|++++|.+.+. +. ++++++|++|++++|.+++..+ +..+
T Consensus 45 l~~l~~L~l~~~~i~-------~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l- 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-------SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANL- 111 (466)
T ss_dssp HHTCCEEECCSSCCC-------CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTC-
T ss_pred hccccEEecCCCCCc-------cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCC-
Confidence 567888888876532 223 366678999999999998754 44 8999999999999999986544 6666
Q ss_pred ccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCC-CCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccC
Q 040185 101 LALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLP-LWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISF 179 (458)
Q Consensus 101 ~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 179 (458)
++|++|++++|.+.+ .+...++++|++|++++|++.+... ..+++|++|+++ +.+. ..+ .+ ..+++|++|++++
T Consensus 112 ~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~-~~~-~~-~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 112 TNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVT-DLK-PL-ANLTTLERLDISS 186 (466)
T ss_dssp TTCCEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCC-CCG-GG-TTCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCC-ChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecC-Cccc-Cch-hh-ccCCCCCEEECcC
Confidence 899999999999884 4445589999999999998876432 236789999996 4444 222 24 3699999999999
Q ss_pred CCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCc
Q 040185 180 NSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQ 259 (458)
Q Consensus 180 ~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 259 (458)
|.+.. . ..+..+++|++|++++|. +.+..+ ++.+++|+.|++++|.+++. +.+..+++|+.|++++|.
T Consensus 187 n~l~~-~-~~l~~l~~L~~L~l~~n~------l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 187 NKVSD-I-SVLAKLTNLESLIATNNQ------ISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp SCCCC-C-GGGGGCTTCSEEECCSSC------CCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred CcCCC-C-hhhccCCCCCEEEecCCc------cccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc
Confidence 99874 3 347889999999999998 433333 67789999999999998843 368889999999999999
Q ss_pred CCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEc
Q 040185 260 LSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDL 339 (458)
Q Consensus 260 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 339 (458)
+. ..+. + ..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 255 l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-------------~~~l~~L~~L~L 316 (466)
T 1o6v_A 255 IS-NLAP-L-SGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP-------------ISNLKNLTYLTL 316 (466)
T ss_dssp CC-CCGG-G-TTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG-------------GGGCTTCSEEEC
T ss_pred cc-cchh-h-hcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh-------------hcCCCCCCEEEC
Confidence 98 4444 3 3489999999999998854 33 8889999999999999875432 335678999999
Q ss_pred ccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCcc
Q 040185 340 SSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGE 419 (458)
Q Consensus 340 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 419 (458)
++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|++++.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999987655 77899999999999999853 468899999999999999986665 88999999999999999874
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-34 Score=292.12 Aligned_cols=366 Identities=17% Similarity=0.156 Sum_probs=274.1
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
+++++||+++|.... ..+..+..+++|++|++++|.+.+..|++++++++|++|+|++|.++ .+|.. .+ +
T Consensus 52 ~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l-~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSISE------LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM-A 121 (562)
T ss_dssp TTCCEEECCSSCCCC------CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC-T
T ss_pred CCcCEEECCCCCccc------cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc-c
Confidence 679999999987531 12245778889999999999998777889999999999999999998 56655 44 8
Q ss_pred cCcEEecCCcccccC-CCCCC-CCCCCCEEECcCCcccCCCCCCCCCc--cEEeccCCcC--cCcCchhhhc--------
Q 040185 102 ALDELDVGSNELSGR-IPNSL-GFRFPGTVDLRSNRYEGPLPLWSFNV--TKLYLNNNLF--SGPIPRDFGQ-------- 167 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~L--~~L~L~~~~~--~~~~~~~~~~-------- 167 (458)
+|++|++++|.+++. .+..+ ++++|++|++++|++.+.....+.+| ++|++++|.+ ++..+..+..
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 999999999999852 33455 79999999999999987555555666 9999999887 5444443321
Q ss_pred -----------------CCCCCcEEEccCCCC----------------------------ccC----CcccccCCCCCcE
Q 040185 168 -----------------KIPFLTDLDISFNSL----------------------------NGS----VPKSIGNLQQLLT 198 (458)
Q Consensus 168 -----------------~l~~L~~L~l~~~~i----------------------------~~~----~~~~l~~l~~L~~ 198 (458)
.+++|+.+++++|.. .+. .+. ....++|++
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~~~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-FFWPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-HHTTSSEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-hhhcccccE
Confidence 234555555555531 000 000 011236777
Q ss_pred EEcccCcCCCCCCCcccCCccc-----CCc--------------------------CCCcEEEeecccCCCCccccccCC
Q 040185 199 LVISNNNYMSNNSLPGEIPDSI-----GSL--------------------------LSVRFLIFCNNHISGEVPPSLKNC 247 (458)
Q Consensus 199 L~L~~~~~~~~~~~~~~~~~~~-----~~l--------------------------~~L~~L~l~~~~l~~~~~~~l~~l 247 (458)
|++++|. +.+.+|..+ ..+ .+|++|++++|.+.... ....+
T Consensus 281 L~l~~n~------l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 281 LNIYNLT------ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp EEEEEEE------ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred EEEeccE------eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 7777776 343444433 212 34777777777765221 12678
Q ss_pred CCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCc--CCccccCCCCCCEEEcCCCcCcccCchhhccCCCCce
Q 040185 248 SMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGA--IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEY 325 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 325 (458)
++|++|++++|.+.+..|..+.. +++|+.|++++|.+.+. .|..+..+++|+.|++++|.+.+.+|..
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--------- 422 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR--------- 422 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---------
T ss_pred CCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---------
Confidence 99999999999999667776655 99999999999999853 2456889999999999999998644432
Q ss_pred eecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCcc-ccCCC
Q 040185 326 VFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPS-MVSLT 404 (458)
Q Consensus 326 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-l~~l~ 404 (458)
.+..+++|+.|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..++
T Consensus 423 -~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 497 (562)
T 3a79_B 423 -TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497 (562)
T ss_dssp -CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred -hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence 123456899999999999876655443 69999999999998 78888889999999999999999 56665 88999
Q ss_pred CCCeeecccCcCCccCC
Q 040185 405 FMNHLNLSYNNLSGEIP 421 (458)
Q Consensus 405 ~L~~L~l~~n~l~~~~p 421 (458)
+|+.|++++|++....|
T Consensus 498 ~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCCCEECCSCCBCCCHH
T ss_pred CCCEEEecCCCcCCCcc
Confidence 99999999999986544
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=285.22 Aligned_cols=344 Identities=20% Similarity=0.222 Sum_probs=280.1
Q ss_pred cEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC---CCCccEEeccC
Q 040185 79 TTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVTKLYLNN 154 (458)
Q Consensus 79 ~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L~L~~ 154 (458)
+.++.+++.++ .+|..+ ++++++|++++|.+++..+..+ ++++|++|++++|.+.+..+.. +++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 67888888886 566644 3689999999999997666666 7999999999999998766544 56899999999
Q ss_pred CcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecc
Q 040185 155 NLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNN 234 (458)
Q Consensus 155 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 234 (458)
|.++ .++...+.++++|++|++++|.+....+..+..+++|++|++++|. +....+..|..+++|++|++++|
T Consensus 90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND------LVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT------CCEECTTSSTTCTTCCEEEEESC
T ss_pred CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc------cceeChhhccCCCCCCEEECCCC
Confidence 9998 6666655579999999999999987778889999999999999998 56667778899999999999999
Q ss_pred cCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCc
Q 040185 235 HISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIP 314 (458)
Q Consensus 235 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 314 (458)
.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|...+.++.......+|+.|++++|.+....+
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 999777777899999999999999998 5555444558999999999988776777666667799999999999885443
Q ss_pred hhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccc
Q 040185 315 SCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 394 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 394 (458)
..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 242 ~~~~~-----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 242 LAVRH-----------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp HHHTT-----------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred HHhcC-----------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 44443 5589999999999988888888999999999999999997778889999999999999999996
Q ss_pred cCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCCCCCcCCCC
Q 040185 395 SIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNLALCGDPL 446 (458)
Q Consensus 395 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 446 (458)
..+..+..+++|++|++++|++...-+....+....... +.++...|..|.
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~-~~~~~~~C~~p~ 361 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN-FNRQQPTCATPE 361 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSC-CTTCCCBEEESG
T ss_pred eCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccc-cCccCceeCCch
Confidence 666678889999999999999875432211122233344 556666676553
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-33 Score=277.67 Aligned_cols=340 Identities=24% Similarity=0.312 Sum_probs=280.1
Q ss_pred CCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEE
Q 040185 51 PFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVD 130 (458)
Q Consensus 51 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~ 130 (458)
+.++++|+++++.+. .++. +..+++|++|++++|.+++..+ +..+ ++|++|++++|.+.+..+ ..++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhcc-ccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 358999999999987 4554 8899999999999999986544 6666 999999999999985443 55899999999
Q ss_pred CcCCcccCCCC-CCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCC
Q 040185 131 LRSNRYEGPLP-LWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSN 209 (458)
Q Consensus 131 l~~n~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~ 209 (458)
+++|.+.+..+ ..+++|++|++++|.+. .++ .+. .+++|++|++++ .+.+. ..+..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~-~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l--- 189 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTIS-DIS-ALS-GLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV--- 189 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEEC-CCG-GGT-TCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC---
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccC-CCh-hhc-cCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC---
Confidence 99999987643 33779999999999987 444 344 699999999974 44422 2388999999999999984
Q ss_pred CCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcC
Q 040185 210 NSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAI 289 (458)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 289 (458)
... ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+. .++ .+.. +++|+.|++++|.+.+..
T Consensus 190 ---~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~l~~-l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 190 ---SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLAS-LTNLTDLDLANNQISNLA 259 (466)
T ss_dssp ---CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGG-CTTCSEEECCSSCCCCCG
T ss_pred ---CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cch-hhhc-CCCCCEEECCCCccccch
Confidence 322 347889999999999999986554 778999999999999998 554 3443 999999999999998553
Q ss_pred CccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCC
Q 040185 290 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLV 369 (458)
Q Consensus 290 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 369 (458)
+ +..+++|+.|++++|.+.+..+ + ..+++|+.|++++|.+.+..+ +..+++|++|++++|++.
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~~~~--~-----------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISNISP--L-----------AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCCCGG--G-----------TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred h--hhcCCCCCEEECCCCccCcccc--c-----------cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCC
Confidence 3 8899999999999999885432 2 346689999999999976544 788999999999999998
Q ss_pred CcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCC
Q 040185 370 GKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGN 438 (458)
Q Consensus 370 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~ 438 (458)
+..| +..+++|+.|++++|.+.+. ..+..+++|++|++++|++.+.+| +..++.|+.++ +.+|
T Consensus 323 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~-l~~n 385 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLG-LNDQ 385 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEE-CCCE
T ss_pred Cchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEe-ccCC
Confidence 6555 78899999999999999854 568899999999999999998777 78888998877 5554
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-33 Score=286.91 Aligned_cols=374 Identities=21% Similarity=0.204 Sum_probs=249.1
Q ss_pred cccceeeccCCcchhhccccccCC-CCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLD-SHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLD 100 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~ 100 (458)
.++++||+++|... .++ ..+..+++|++|+|++|.+.+..+.+|+++++|++|+|++|++++..+..|..+
T Consensus 52 ~~~~~LdLs~N~i~-------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L- 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL- 123 (635)
T ss_dssp TTCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC-
T ss_pred cCCCEEEeeCCCCC-------CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC-
Confidence 35788899988753 222 346777889999999998876667788889999999999998886555667766
Q ss_pred ccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCC-CCCC---CCCccEEeccCCcCcCcCchhhhcCCCC----
Q 040185 101 LALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGP-LPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPF---- 171 (458)
Q Consensus 101 ~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~-~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~---- 171 (458)
++|++|++++|++++..+..+ ++++|++|++++|.+.+. .|.. +++|++|++++|++++..+..+.. +++
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~ 202 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLL 202 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhhh
Confidence 889999999998885444444 688899999998888653 3332 568888888888876433333221 111
Q ss_pred CcEEEccCCCCccCC-----------------------------------------------------------------
Q 040185 172 LTDLDISFNSLNGSV----------------------------------------------------------------- 186 (458)
Q Consensus 172 L~~L~l~~~~i~~~~----------------------------------------------------------------- 186 (458)
...++++.|.+....
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 112222222211000
Q ss_pred --------------------------------------cccccCCCCCcEEEcccCcCCCC---------------CCCc
Q 040185 187 --------------------------------------PKSIGNLQQLLTLVISNNNYMSN---------------NSLP 213 (458)
Q Consensus 187 --------------------------------------~~~l~~l~~L~~L~L~~~~~~~~---------------~~~~ 213 (458)
...+.....++.|++.+|.+... +..
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~- 361 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG- 361 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS-
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC-
Confidence 00112223455666665543110 000
Q ss_pred ccCCcccCCcCCCcEEEeecccCCC--Ccccc-----------------------ccCCCCCCEEecCCCcCCCCCchhh
Q 040185 214 GEIPDSIGSLLSVRFLIFCNNHISG--EVPPS-----------------------LKNCSMMESLDLGDNQLSGNIPAWI 268 (458)
Q Consensus 214 ~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~-----------------------l~~l~~L~~L~l~~n~l~~~~~~~~ 268 (458)
..+.....+++|+.|+++.|.+.. ..+.. +..+++|+.+++..+......+...
T Consensus 362 -~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 362 -GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp -CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred -CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence 011222346778888888777642 12222 3344455555555554443333333
Q ss_pred hhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcc-cCchhhccCCCCceeecccccccCEEEcccCcCCcc
Q 040185 269 GESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSG-FIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSRE 347 (458)
Q Consensus 269 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 347 (458)
+..+++++.++++.|.+....+..+..+++++.|++++|.+.. ..|.. +..+++|++|++++|.+.+.
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-----------~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----------FTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-----------CTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh-----------hhhccccCEEECCCCccCCc
Confidence 3345666666666666665555566666677777777665332 22332 33456899999999999999
Q ss_pred CChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCC-CCCCeeecccCcCC
Q 040185 348 MPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSL-TFMNHLNLSYNNLS 417 (458)
Q Consensus 348 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~ 417 (458)
.+..+.++++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..+ ++|++|++++|++.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999999999999999997777889999999999999999998888889888 68999999999986
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-33 Score=268.68 Aligned_cols=330 Identities=19% Similarity=0.195 Sum_probs=209.8
Q ss_pred CCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC---CCCccEE
Q 040185 75 QTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVTKL 150 (458)
Q Consensus 75 ~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L 150 (458)
++++++|+++++.++...+..+..+ ++|++|++++|.+.+..+..+ .+++|++|++++|++.+..+.. +++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4555666666665543222223333 566666666666554333333 4556666666666655544332 4466666
Q ss_pred eccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEE
Q 040185 151 YLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLI 230 (458)
Q Consensus 151 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 230 (458)
++++|.++ .++..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+ ... .+..+++|++|+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------THV---DLSLIPSLFHAN 192 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC------SBC---CGGGCTTCSEEE
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC------Ccc---ccccccccceee
Confidence 66666666 55555544577777777777777755566677777777777777773 222 244566777777
Q ss_pred eecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCc
Q 040185 231 FCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 231 l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 310 (458)
+++|.++ .+...++|+.|++++|.+. .++... .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 193 l~~n~l~-----~~~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 193 VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CCSSCCS-----EEECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ccccccc-----ccCCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 7777665 2334457777777777776 444432 56777788877777643 46677777888888888777
Q ss_pred ccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCC
Q 040185 311 GFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 390 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n 390 (458)
+..+..+.. +++|+.|++++|.+.+ .+..+..+++|++|++++|++. .+|..+..+++|++|++++|
T Consensus 262 ~~~~~~~~~-----------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 262 KIMYHPFVK-----------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp EEESGGGTT-----------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CcChhHccc-----------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCC
Confidence 665555544 3467778888877755 3444566788888888888887 66777778888899999988
Q ss_pred cccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCCCCCcCC
Q 040185 391 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNLALCGD 444 (458)
Q Consensus 391 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 444 (458)
.+... + +..+++|++|++++|++...- ....+..+.... +.++...|..
T Consensus 329 ~i~~~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~-~~~~~~~c~~ 377 (390)
T 3o6n_A 329 SIVTL-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPA-VDDADQHCKI 377 (390)
T ss_dssp CCCCC-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTT-BCCCCSCCCT
T ss_pred cccee-C--chhhccCCEEEcCCCCccchh-HHHHHHHHHhhc-ccccCceecc
Confidence 88733 3 667788889999998886431 111234444444 4445555543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.2e-33 Score=272.76 Aligned_cols=345 Identities=16% Similarity=0.138 Sum_probs=218.3
Q ss_pred HhccccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHh
Q 040185 19 KILISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQ 98 (458)
Q Consensus 19 ~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~ 98 (458)
..++++++||+++|... .+| .+..+++|++|++++|.+.+ ++ ++.+++|++|++++|.+++. + +..
T Consensus 39 ~~l~~L~~L~Ls~n~l~-------~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSIT-------DMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp HHHTTCCEEECCSSCCC-------CCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred hHcCCCCEEEccCCCcc-------cCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 34567777777776533 122 45666777777777777764 33 67777777777777777653 2 455
Q ss_pred hcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEcc
Q 040185 99 LDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDIS 178 (458)
Q Consensus 99 ~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 178 (458)
+ ++|++|++++|.+++ ++ ...+++|++|++++|++++.....+++|++|++++|...+.+ .+. .+++|++|+++
T Consensus 105 l-~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~-~l~~L~~L~ls 178 (457)
T 3bz5_A 105 L-TKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVT-PQTQLTTLDCS 178 (457)
T ss_dssp C-TTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCT-TCTTCCEEECC
T ss_pred C-CcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccc-cCCcCCEEECC
Confidence 4 777777777777774 33 336777777777777777654344667777777777544344 232 46777777777
Q ss_pred CCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCC
Q 040185 179 FNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDN 258 (458)
Q Consensus 179 ~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 258 (458)
+|.+++ ++ +..+++|++|++++|.+ .+. .+..+++|++|++++|.+++ +| +..+++|+.|++++|
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l------~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNI------TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCC------SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred CCccce-ec--cccCCCCCEEECcCCcC------Cee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 777764 33 66677777777777773 322 36667777777777777775 34 667777777777777
Q ss_pred cCCCCCchhhhhCCCCccEEEcccCcCC----------CcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeec
Q 040185 259 QLSGNIPAWIGESMPSLSILRLRSNYFN----------GAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY 328 (458)
Q Consensus 259 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 328 (458)
.+. .++.. .+++|+.++++.+.+. +.+| +..+++|+.|++++|...+.+|... ..+..+.+
T Consensus 244 ~l~-~~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L~~L~l 314 (457)
T 3bz5_A 244 PLT-ELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGITELDL 314 (457)
T ss_dssp CCS-CCCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCCSCCCC
T ss_pred cCC-CcCHH---HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---CcceEech
Confidence 776 34321 2445554444444332 2222 3456677777777776655555322 23333345
Q ss_pred ccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCe
Q 040185 329 STLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH 408 (458)
Q Consensus 329 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 408 (458)
..+++|+.|++++|.+++. .+..+++|++|++++|++.+ ++.|..|++++|.+.+. ..+..|..
T Consensus 315 ~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~ 378 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK 378 (457)
T ss_dssp TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence 5666777777777777653 25666777777777776653 13455556666666543 24467888
Q ss_pred eecccCcCCccCCCC
Q 040185 409 LNLSYNNLSGEIPKV 423 (458)
Q Consensus 409 L~l~~n~l~~~~p~~ 423 (458)
+++++|.++|.+|..
T Consensus 379 l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPD 393 (457)
T ss_dssp BCCBTTBEEEECCTT
T ss_pred cccccCcEEEEcChh
Confidence 999999999998863
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.2e-33 Score=262.24 Aligned_cols=259 Identities=34% Similarity=0.577 Sum_probs=190.4
Q ss_pred CCcEEEccCCCCcc--CCcccccCCCCCcEEEccc-CcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCC
Q 040185 171 FLTDLDISFNSLNG--SVPKSIGNLQQLLTLVISN-NNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNC 247 (458)
Q Consensus 171 ~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 247 (458)
++++|++++|.+.+ .+|..+..+++|++|++++ |. +.+..|..+..+++|++|++++|.+++..|..+..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 45555555555554 4555555666666666663 44 344555556666666666666666665556666666
Q ss_pred CCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCC-CCCEEEcCCCcCcccCchhhccCCCCcee
Q 040185 248 SMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLS-ALHILDLSHNNLSGFIPSCVGNFSRTEYV 326 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 326 (458)
++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+..|..+..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------ 197 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------ 197 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------
T ss_pred CCCCEEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC------
Confidence 66666666666666555555554 66667777766666666666666666 67777777777766666554432
Q ss_pred ecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCC
Q 040185 327 FYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFM 406 (458)
Q Consensus 327 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 406 (458)
. |+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++.+|..+..+++|
T Consensus 198 -----~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 198 -----N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp -----C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred -----c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 2 77777777777777778888899999999999998855554 7888999999999999998899999999999
Q ss_pred CeeecccCcCCccCCCCCCCCCCCCCccccCCCCCcCCCCCCCCC
Q 040185 407 NHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNLALCGDPLPKRCS 451 (458)
Q Consensus 407 ~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~c~ 451 (458)
++|++++|++++.+|....++.|+.++ +.+|+.+||.|+. .|.
T Consensus 271 ~~L~Ls~N~l~~~ip~~~~l~~L~~l~-l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSPLP-ACT 313 (313)
T ss_dssp CEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTTSS-CCC
T ss_pred CEEECcCCcccccCCCCccccccChHH-hcCCCCccCCCCC-CCC
Confidence 999999999999999998999999999 8999999999987 673
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-31 Score=254.85 Aligned_cols=305 Identities=22% Similarity=0.301 Sum_probs=190.5
Q ss_pred CCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEE
Q 040185 50 PPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTV 129 (458)
Q Consensus 50 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L 129 (458)
.+++|++|+++++.+. .++ .+..+++|++|++++|.+++..+ +..+ ++|++|++++|.++ .++...++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~L~~n~i~-~~~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTNKIT-DISALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCC-CCGGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcC-CcCCEEEccCCccc-CchHHcCCCcCCEE
Confidence 3457888888888776 344 37778888888888888875433 5555 78888888888776 34433356666666
Q ss_pred ECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCC
Q 040185 130 DLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSN 209 (458)
Q Consensus 130 ~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~ 209 (458)
++++|.+.+. +. + ..+++|++|++++|...... ..+..+++|++|++++|.+
T Consensus 116 ~l~~n~i~~~----------------------~~-~-~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~--- 167 (347)
T 4fmz_A 116 YLNEDNISDI----------------------SP-L-ANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKV--- 167 (347)
T ss_dssp ECTTSCCCCC----------------------GG-G-TTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCC---
T ss_pred ECcCCcccCc----------------------hh-h-ccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCc---
Confidence 6666655432 22 2 23555666666665433222 2355556666666666552
Q ss_pred CCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcC
Q 040185 210 NSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAI 289 (458)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 289 (458)
.... .+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+. ..+. +. .+++|++|++++|.+.+.
T Consensus 168 ---~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~~~~L~~L~l~~n~l~~~- 236 (347)
T 4fmz_A 168 ---KDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-VA-NMTRLNSLKIGNNKITDL- 236 (347)
T ss_dssp ---CCCG--GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCCC-
T ss_pred ---CCch--hhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-hh-cCCcCCEEEccCCccCCC-
Confidence 2111 14555666666666666553222 556666666666666665 3332 22 266666666666666633
Q ss_pred CccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCC
Q 040185 290 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLV 369 (458)
Q Consensus 290 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 369 (458)
+. +..+++|+.|++++|.+.+. .. +..+++|+.|++++|.+.+. ..+..+++|++|++++|++.
T Consensus 237 ~~-~~~l~~L~~L~l~~n~l~~~--~~-----------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 237 SP-LANLSQLTWLEIGTNQISDI--NA-----------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCC--GG-----------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cc-hhcCCCCCEEECCCCccCCC--hh-----------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence 22 66666777777777666532 11 22345677777777776553 34677888888888888888
Q ss_pred CcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 370 GKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 370 ~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
+..+..+..+++|++|++++|.+++..| +..+++|++|++++|+++
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 7777778888888888888888875444 778888888888888875
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=255.18 Aligned_cols=305 Identities=20% Similarity=0.356 Sum_probs=235.6
Q ss_pred ccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEe
Q 040185 72 LRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLY 151 (458)
Q Consensus 72 l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~ 151 (458)
+..+++|++|+++++.+.+ ++. +..+ ++|++|++++|.++ .++...++++|+ +|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~~-~~~~-~~L~~L~l~~n~i~-~~~~~~~l~~L~---------------------~L~ 94 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQG-IEYL-TNLEYLNLNGNQIT-DISPLSNLVKLT---------------------NLY 94 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CTT-GGGC-TTCCEEECCSSCCC-CCGGGTTCTTCC---------------------EEE
T ss_pred chhcccccEEEEeCCcccc-chh-hhhc-CCccEEEccCCccc-cchhhhcCCcCC---------------------EEE
Confidence 4456777777777777653 332 4444 67777777777666 222222444444 455
Q ss_pred ccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEe
Q 040185 152 LNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIF 231 (458)
Q Consensus 152 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 231 (458)
+++|.++ .++ .+ ..+++|++|++++|.+.+ .+. +..+++|++|++++|.. .. ....+..+++|++|++
T Consensus 95 L~~n~i~-~~~-~~-~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~------~~-~~~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 95 IGTNKIT-DIS-AL-QNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHN------LS-DLSPLSNMTGLNYLTV 162 (347)
T ss_dssp CCSSCCC-CCG-GG-TTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTT------CC-CCGGGTTCTTCCEEEC
T ss_pred ccCCccc-Cch-HH-cCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCC------cc-cccchhhCCCCcEEEe
Confidence 5555444 232 34 369999999999999984 443 88999999999999973 22 2344888999999999
Q ss_pred ecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcc
Q 040185 232 CNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSG 311 (458)
Q Consensus 232 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 311 (458)
++|.+.+..+ +..+++|++|++++|.+. .++. +. .+++|+.+++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCccc-cccc-cc-CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC
Confidence 9999985443 889999999999999998 5655 43 49999999999999885433 8889999999999999875
Q ss_pred cCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCc
Q 040185 312 FIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNK 391 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~ 391 (458)
..+ +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.
T Consensus 236 ~~~-------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 236 LSP-------------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CGG-------------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC
T ss_pred Ccc-------------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCc
Confidence 432 33566899999999999764 568889999999999999984 4 457889999999999999
Q ss_pred ccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCCC
Q 040185 392 LSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNL 439 (458)
Q Consensus 392 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~ 439 (458)
+.+..+..+..+++|++|++++|++++..| +..++.|++++ +.+|+
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~-l~~N~ 344 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD-FANQV 344 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES-SSCC-
T ss_pred CCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee-hhhhc
Confidence 998888889999999999999999987666 77899999988 55553
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.5e-32 Score=266.86 Aligned_cols=348 Identities=25% Similarity=0.321 Sum_probs=150.1
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCc-------------cEEEccCCCc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTEL-------------TTLVLNNARI 88 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------------~~L~L~~~~i 88 (458)
+.++++++++|.. ..+|..++.+++|++|++++|.+.+.+|..++++++| ++|++++|.+
T Consensus 11 ~~L~~L~l~~n~l-------~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-------TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccchhhhcccCch-------hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 4455555555542 1345555555556666665555555555555555443 5555555555
Q ss_pred ccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcC
Q 040185 89 SDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQK 168 (458)
Q Consensus 89 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 168 (458)
++ +|. .+++|++|++++|.+++ ++.. .++|++|++++|++++ ++...++|++|++++|.++ .+| .+. .
T Consensus 84 ~~-lp~----~~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~~-l~~~~~~L~~L~L~~n~l~-~lp-~~~-~ 151 (454)
T 1jl5_A 84 SS-LPE----LPPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLE-KLP-ELQ-N 151 (454)
T ss_dssp SC-CCS----CCTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCS-SCC-CCT-T
T ss_pred cc-CCC----CcCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccCc-ccCCCCCCCEEECcCCCCC-CCc-ccC-C
Confidence 43 222 12455555555555553 3322 2455555555555543 1222245555555555554 234 222 3
Q ss_pred CCCCcEEEccCCCCccCCcc-------------------cccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEE
Q 040185 169 IPFLTDLDISFNSLNGSVPK-------------------SIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFL 229 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~~~~~-------------------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 229 (458)
+++|++|++++|++++ +|. .+..+++|++|++++|.+ .+ +|.. .++|++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l------~~-l~~~---~~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL------KK-LPDL---PLSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC------SS-CCCC---CTTCCEE
T ss_pred CCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC------Cc-CCCC---cCcccEE
Confidence 5555555555555442 222 244444444444444442 11 1111 1245555
Q ss_pred EeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcC
Q 040185 230 IFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNL 309 (458)
Q Consensus 230 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 309 (458)
++++|.++ .+| .+..+++|++|++++|.+. .+|. .+++|++|++++|.+.+ +|.. .++|+.|++++|.+
T Consensus 221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 55555554 333 2555555555555555555 3332 13455566665555553 2321 25566666666666
Q ss_pred ccc--CchhhccC--CCCceeecccc-cccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcE
Q 040185 310 SGF--IPSCVGNF--SRTEYVFYSTL-YLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLES 384 (458)
Q Consensus 310 ~~~--~~~~~~~~--~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 384 (458)
.+. .|..+..+ ..-....+... ++|+.|++++|.+.+ +|.. +++|++|++++|.++ .+|. .+++|++
T Consensus 290 ~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~ 361 (454)
T 1jl5_A 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQ 361 (454)
T ss_dssp SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred CcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccE
Confidence 541 11111100 00000001112 356666666666654 3322 356777777777666 4554 3566777
Q ss_pred EeCCCCcccc--cCCccccCC-------------CCCCeeecccCcCCc
Q 040185 385 LDLSKNKLSG--SIPPSMVSL-------------TFMNHLNLSYNNLSG 418 (458)
Q Consensus 385 L~L~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~l~~ 418 (458)
|++++|++.+ .+|..+..+ ++|++|++++|++.+
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 7777777765 556666555 667777777777765
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-32 Score=277.30 Aligned_cols=330 Identities=19% Similarity=0.195 Sum_probs=232.5
Q ss_pred CCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC---CCCccEE
Q 040185 75 QTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVTKL 150 (458)
Q Consensus 75 ~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L 150 (458)
+++++.++++++.++...+..+..+ ++|++|++++|.+.+..+..+ .+++|++|++++|.+.+..+.. +++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4566777777777654433334444 677777777777765554444 5677777777777776655433 4577777
Q ss_pred eccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEE
Q 040185 151 YLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLI 230 (458)
Q Consensus 151 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 230 (458)
++++|.++ .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+ .+. .+..+++|+.|+
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l------~~~---~~~~l~~L~~L~ 198 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------THV---DLSLIPSLFHAN 198 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC------SBC---CGGGCTTCSEEE
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC------CCc---Chhhhhhhhhhh
Confidence 77777776 55665545688888888888888766676778888888888888873 332 245567788888
Q ss_pred eecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCc
Q 040185 231 FCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 231 l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 310 (458)
+++|.++ .+...++|+.|++++|.+. .++..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.
T Consensus 199 l~~n~l~-----~l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 199 VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp CCSSCCS-----EEECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred cccCccc-----cccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 8888776 2344567888888888877 554433 4678888888888775 356778888888888888888
Q ss_pred ccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCC
Q 040185 311 GFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 390 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n 390 (458)
+..|..+.. +++|+.|++++|.+.+ ++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 268 ~~~~~~~~~-----------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 268 KIMYHPFVK-----------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp EEESGGGTT-----------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CCCHHHhcC-----------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 776666554 3478888888888865 3555567889999999999888 67877888899999999999
Q ss_pred cccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCCCCCcCC
Q 040185 391 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNLALCGD 444 (458)
Q Consensus 391 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 444 (458)
.+.+. + +..+++|+.|++++|++.+... ...+..+.... +.++...|+.
T Consensus 335 ~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~-~~~~~~~C~~ 383 (597)
T 3oja_B 335 SIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPA-VDDADQHCKI 383 (597)
T ss_dssp CCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTT-BCCCCCCCCT
T ss_pred CCCCc-C--hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhc-cccccccCCc
Confidence 88743 3 6677899999999999875421 12244444444 5566666754
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.8e-31 Score=257.34 Aligned_cols=338 Identities=23% Similarity=0.314 Sum_probs=214.7
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcc
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDL 101 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 101 (458)
.++++|+++++... .+|. + +++|++|++++|.+.+ +|.. .++|++|++++|.+++ ++. .++
T Consensus 71 ~~l~~L~l~~~~l~-------~lp~-~--~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~ 131 (454)
T 1jl5_A 71 RQAHELELNNLGLS-------SLPE-L--PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPP 131 (454)
T ss_dssp HTCSEEECTTSCCS-------CCCS-C--CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCT
T ss_pred cCCCEEEecCCccc-------cCCC-C--cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCC
Confidence 34677888877532 1222 1 2589999999998885 6643 4789999999998875 332 226
Q ss_pred cCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCC
Q 040185 102 ALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNS 181 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 181 (458)
+|++|++++|.+++ +|...++++|++|++++|++++ +|..+.+|++|++++|.+++ +| .+. .+++|++|++++|.
T Consensus 132 ~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNS 206 (454)
T ss_dssp TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSC
T ss_pred CCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCc
Confidence 89999999999984 7755589999999999999886 56667799999999999984 66 454 69999999999999
Q ss_pred CccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCC
Q 040185 182 LNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 182 i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (458)
+.+ +|.. .++|++|++++|. +. .+| .+..+++|++|++++|.+++ +|. .+++|+.|++++|.+.
T Consensus 207 l~~-l~~~---~~~L~~L~l~~n~------l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 207 LKK-LPDL---PLSLESIVAGNNI------LE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT 270 (454)
T ss_dssp CSS-CCCC---CTTCCEEECCSSC------CS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred CCc-CCCC---cCcccEEECcCCc------CC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccc
Confidence 874 4432 2589999999988 43 445 47888999999999998874 443 2478888888888887
Q ss_pred CCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeec---------cccc
Q 040185 262 GNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY---------STLY 332 (458)
Q Consensus 262 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~---------~~~~ 332 (458)
.+|.. +++|+.|++++|.+.+. +. -.++|+.|++++|.+.+.. ... ..+..+.+ ..++
T Consensus 271 -~l~~~----~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~-~~~---~~L~~L~Ls~N~l~~lp~~~~ 337 (454)
T 1jl5_A 271 -DLPEL----PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC-DLP---PSLEELNVSNNKLIELPALPP 337 (454)
T ss_dssp -CCCCC----CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC-CCC---TTCCEEECCSSCCSCCCCCCT
T ss_pred -ccCcc----cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc-CCc---CcCCEEECCCCccccccccCC
Confidence 45542 46788888888877641 11 0134555555555554311 000 01111110 1246
Q ss_pred ccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCC--cccccccCC-------------CCCcEEeCCCCcccc--c
Q 040185 333 LVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVG--KIPTQIGKL-------------EWLESLDLSKNKLSG--S 395 (458)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~~-------------~~L~~L~L~~n~~~~--~ 395 (458)
+|+.|++++|.++. +|. .+++|++|++++|++.+ .+|..+..+ ++|++|++++|.+.+ .
T Consensus 338 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~ 413 (454)
T 1jl5_A 338 RLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413 (454)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------
T ss_pred cCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc
Confidence 89999999999975 444 46899999999999997 678888776 889999999999985 4
Q ss_pred CCccccCCCCCCeeecccCcCCccCCC
Q 040185 396 IPPSMVSLTFMNHLNLSYNNLSGEIPK 422 (458)
Q Consensus 396 ~~~~l~~l~~L~~L~l~~n~l~~~~p~ 422 (458)
+| ++++.|.+.+|.+.+.+|.
T Consensus 414 iP------~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 414 IP------ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ---------------------------
T ss_pred ch------hhHhheeCcCcccCCcccc
Confidence 45 3577888899988766554
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-32 Score=263.50 Aligned_cols=302 Identities=24% Similarity=0.249 Sum_probs=250.3
Q ss_pred ccCcEEecCCcccccCCCCC-C-CCCCCCEEECcCCcccCCCCC---CCCCccEEeccCCcCcCcCchhhhcCCCCCcEE
Q 040185 101 LALDELDVGSNELSGRIPNS-L-GFRFPGTVDLRSNRYEGPLPL---WSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDL 175 (458)
Q Consensus 101 ~~L~~L~L~~~~l~~~~~~~-~-~~~~L~~L~l~~n~~~~~~~~---~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 175 (458)
+++++|+++++.+. .++.. + .+++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCCEE
Confidence 79999999999998 45543 3 689999999999999876553 36799999999999985444445 469999999
Q ss_pred EccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEec
Q 040185 176 DISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDL 255 (458)
Q Consensus 176 ~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 255 (458)
++++|.+....+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++. .+..+++|+.+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN------LERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCc------cCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 999999985444456899999999999999 5666677889999999999999999854 3567899999999
Q ss_pred CCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccC
Q 040185 256 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVN 335 (458)
Q Consensus 256 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 335 (458)
++|.+. .++ ..++|++|++++|.+... +. ...++|+.|++++|.+.+. .. +..+++|+
T Consensus 194 ~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~-----------l~~l~~L~ 251 (390)
T 3o6n_A 194 SYNLLS-TLA-----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AW-----------LLNYPGLV 251 (390)
T ss_dssp CSSCCS-EEE-----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GG-----------GGGCTTCS
T ss_pred cccccc-ccC-----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HH-----------HcCCCCcc
Confidence 999887 432 267899999999998854 32 3357899999999998753 22 34567899
Q ss_pred EEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCc
Q 040185 336 LMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNN 415 (458)
Q Consensus 336 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 415 (458)
.|++++|.+.+..+..+..+++|++|++++|++. .++..+..+++|++|++++|.+. .+|..+..+++|++|++++|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 9999999999888999999999999999999998 57777788999999999999998 677778899999999999999
Q ss_pred CCccCCCCCCCCCCCCCccccCCCC
Q 040185 416 LSGEIPKVNQFQSLKDPSIYAGNLA 440 (458)
Q Consensus 416 l~~~~p~~~~~~~l~~~~~~~~~~~ 440 (458)
+++. | ...++.|+.++ +.+|+.
T Consensus 330 i~~~-~-~~~~~~L~~L~-l~~N~~ 351 (390)
T 3o6n_A 330 IVTL-K-LSTHHTLKNLT-LSHNDW 351 (390)
T ss_dssp CCCC-C-CCTTCCCSEEE-CCSSCE
T ss_pred ccee-C-chhhccCCEEE-cCCCCc
Confidence 9854 3 56788888877 555543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=2.7e-30 Score=254.39 Aligned_cols=326 Identities=18% Similarity=0.147 Sum_probs=229.4
Q ss_pred CCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCC
Q 040185 47 HWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFP 126 (458)
Q Consensus 47 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L 126 (458)
.+..+++|++|++++|.+.+ +| .++.+++|++|++++|.+++. + +..+ ++|++|++++|.+++ .+ ..++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l-~~L~~L~Ls~N~l~~-~~-~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQN-TNLTYLACDSNKLTN-LD-VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTC-TTCSEEECCSSCCSC-CC-CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccC-CCCCEEECcCCCCce-ee-cCCCCcC
Confidence 34556799999999999885 45 688999999999999999864 3 5665 899999999999985 33 4478999
Q ss_pred CEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcC
Q 040185 127 GTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNY 206 (458)
Q Consensus 127 ~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 206 (458)
++|++++|++++.....+++|++|++++|.+++ ++ +. .+++|++|++++|...+.+ .+..+++|++|++++|.
T Consensus 109 ~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~- 181 (457)
T 3bz5_A 109 TYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK- 181 (457)
T ss_dssp CEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-
T ss_pred CEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-
Confidence 999999999987544457789999999999884 33 33 5889999999999544344 47788999999999998
Q ss_pred CCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCC
Q 040185 207 MSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 286 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 286 (458)
+.+ ++ +..+++|+.|++++|.+++. .++.+++|+.|++++|++. .+| +. .+++|+.|++++|.+.
T Consensus 182 -----l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip--~~-~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 182 -----ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--VT-PLTQLTYFDCSVNPLT 246 (457)
T ss_dssp -----CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCS
T ss_pred -----cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-ccC--cc-ccCCCCEEEeeCCcCC
Confidence 443 33 77888999999999998854 3788899999999999998 566 33 4889999999999988
Q ss_pred CcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCCh--------hhccccCC
Q 040185 287 GAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPV--------ELTRLIHL 358 (458)
Q Consensus 287 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--------~l~~~~~L 358 (458)
+.. +..+++|+.|++++|.+.... +.............+++|+.|++++|...+.++. .+..+++|
T Consensus 247 ~~~---~~~l~~L~~L~l~~n~L~~L~---l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp CCC---CTTCTTCCEEECTTCCCSCCC---CTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CcC---HHHCCCCCEEeccCCCCCEEE---CCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 653 455667777777666554221 1111111222233455666666666654333221 24445666
Q ss_pred CeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCcc
Q 040185 359 GTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGE 419 (458)
Q Consensus 359 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 419 (458)
++|++++|++++ ++ +..+++|+.|++++|++++ ++.|..|++++|.+.|.
T Consensus 321 ~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 321 VYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp CEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred CEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence 666666666664 32 5666666666666666653 13455555666655543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-31 Score=271.72 Aligned_cols=304 Identities=23% Similarity=0.213 Sum_probs=252.1
Q ss_pred ccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCC---CCCccEEeccCCcCcCcCchhhhcCCCCCcEEE
Q 040185 101 LALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLD 176 (458)
Q Consensus 101 ~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 176 (458)
.+++.+++++|.+....+..+ ++++|++|++++|.+.+..+.. +++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCEEE
Confidence 789999999999984444334 6899999999999998766533 6689999999999985444444 4699999999
Q ss_pred ccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecC
Q 040185 177 ISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLG 256 (458)
Q Consensus 177 l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 256 (458)
+++|.+....+..|..+++|++|++++|. +.+..+..|..+++|++|++++|.+++.. +..+++|+.|+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNN------LERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCc------CCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 99999985555557899999999999999 66777788999999999999999998542 5678999999999
Q ss_pred CCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCE
Q 040185 257 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNL 336 (458)
Q Consensus 257 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 336 (458)
+|.+. .++ .+++|+.|++++|.+... +..+ .++|+.|++++|.+++. .. +..+++|+.
T Consensus 201 ~n~l~-~l~-----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~-----------l~~l~~L~~ 258 (597)
T 3oja_B 201 YNLLS-TLA-----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AW-----------LLNYPGLVE 258 (597)
T ss_dssp SSCCS-EEE-----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--GG-----------GGGCTTCSE
T ss_pred cCccc-ccc-----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--hh-----------hccCCCCCE
Confidence 99887 432 267899999999998743 3222 36899999999998853 22 345668999
Q ss_pred EEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcC
Q 040185 337 MDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 337 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 416 (458)
|++++|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|++
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 999999999988999999999999999999998 57777788999999999999998 6788888999999999999999
Q ss_pred CccCCCCCCCCCCCCCccccCCCCC
Q 040185 417 SGEIPKVNQFQSLKDPSIYAGNLAL 441 (458)
Q Consensus 417 ~~~~p~~~~~~~l~~~~~~~~~~~~ 441 (458)
++. | ...++.|+.++ +.+|+.-
T Consensus 337 ~~~-~-~~~~~~L~~L~-l~~N~~~ 358 (597)
T 3oja_B 337 VTL-K-LSTHHTLKNLT-LSHNDWD 358 (597)
T ss_dssp CCC-C-CCTTCCCSEEE-CCSSCEE
T ss_pred CCc-C-hhhcCCCCEEE-eeCCCCC
Confidence 854 3 56688888877 5555433
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.1e-34 Score=281.40 Aligned_cols=376 Identities=17% Similarity=0.132 Sum_probs=222.3
Q ss_pred cccceeeccCCcchhhccccccCCCCCCCCCcccEEEccCCCCCC----CCCccccCCCCccEEEccCCCcccCCChhHH
Q 040185 22 ISATRINKSDNSSVISEFSNLGLDSHWIPPFKLTFIKIRSCQPGP----KFPTWLRNQTELTTLVLNNARISDTIPNWFW 97 (458)
Q Consensus 22 ~~l~~l~~s~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~ 97 (458)
+++++||++++......... -+..+++|++|++++|.+.+ .++.++..+++|++|+|++|.+++..+..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~-----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAE-----LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHH-----HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHH-----HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 56788888887653222211 12334578888888888763 3456677788888888888888776666666
Q ss_pred hhcc----cCcEEecCCcccccC----CCCCC-CCCCCCEEECcCCcccCCCC--------CCCCCccEEeccCCcCcCc
Q 040185 98 QLDL----ALDELDVGSNELSGR----IPNSL-GFRFPGTVDLRSNRYEGPLP--------LWSFNVTKLYLNNNLFSGP 160 (458)
Q Consensus 98 ~~~~----~L~~L~L~~~~l~~~----~~~~~-~~~~L~~L~l~~n~~~~~~~--------~~l~~L~~L~L~~~~~~~~ 160 (458)
..++ +|++|++++|.+++. ++..+ .+++|++|++++|++.+..+ ...++|++|++++|.+++.
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 5444 688888888887742 23333 57788888888887754221 1133678888887777643
Q ss_pred C----chhhhcCCCCCcEEEccCCCCccCCccccc-----CCCCCcEEEcccCcCCCCCCCccc----CCcccCCcCCCc
Q 040185 161 I----PRDFGQKIPFLTDLDISFNSLNGSVPKSIG-----NLQQLLTLVISNNNYMSNNSLPGE----IPDSIGSLLSVR 227 (458)
Q Consensus 161 ~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-----~l~~L~~L~L~~~~~~~~~~~~~~----~~~~~~~l~~L~ 227 (458)
. +..+. .+++|++|++++|.+.+..+..+. ..++|++|++++|.+ ... ++..+..+++|+
T Consensus 158 ~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l------~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 158 SCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV------TSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp GHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC------BTTHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC------cHHHHHHHHHHHHhCCCcc
Confidence 3 22232 367778888877777643333332 245777777777763 221 244455567777
Q ss_pred EEEeecccCCCCc-----cccccCCCCCCEEecCCCcCCCC----CchhhhhCCCCccEEEcccCcCCCcCCcccc----
Q 040185 228 FLIFCNNHISGEV-----PPSLKNCSMMESLDLGDNQLSGN----IPAWIGESMPSLSILRLRSNYFNGAIPPELC---- 294 (458)
Q Consensus 228 ~L~l~~~~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~---- 294 (458)
+|++++|.+++.. +..+..+++|++|++++|.+++. ++..+.. +++|++|++++|.+.+..+..+.
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhc
Confidence 7777777765432 11223466777777777776632 3444443 67777777777766533222222
Q ss_pred -CCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhcc-----ccCCCeeeCccCcC
Q 040185 295 -KLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTR-----LIHLGTLNLSQNHL 368 (458)
Q Consensus 295 -~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~n~~ 368 (458)
..++|+.|++++|.+++.....+.. .+..+++|+.|++++|.+++..+..+.. .++|++|++++|.+
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~-------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSS-------VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHH-------HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred cCCccceeeEcCCCCCchHHHHHHHH-------HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 2256777777777666442221111 1223446777777777665543333332 45677777777766
Q ss_pred CC----cccccccCCCCCcEEeCCCCcccccCCcccc-----CCCCCCeeecccCcCC
Q 040185 369 VG----KIPTQIGKLEWLESLDLSKNKLSGSIPPSMV-----SLTFMNHLNLSYNNLS 417 (458)
Q Consensus 369 ~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~ 417 (458)
++ .++..+..+++|++|++++|.+++.....+. ....|+.|.+.++...
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 64 4555566666777777777766643221111 1234666666555543
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=7.5e-31 Score=246.04 Aligned_cols=250 Identities=30% Similarity=0.494 Sum_probs=218.5
Q ss_pred CCccEEeccCCcCcC--cCchhhhcCCCCCcEEEccC-CCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccC
Q 040185 145 FNVTKLYLNNNLFSG--PIPRDFGQKIPFLTDLDISF-NSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIG 221 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 221 (458)
.++++|++++|.+++ .+|..+. .+++|++|++++ |.+.+.+|..+..+++|++|++++|. +.+..|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~------l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN------VSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC------CEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe------eCCcCCHHHh
Confidence 468888888888887 7787776 599999999995 88887888889999999999999998 6667888899
Q ss_pred CcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCC-CccEEEcccCcCCCcCCccccCCCCCC
Q 040185 222 SLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMP-SLSILRLRSNYFNGAIPPELCKLSALH 300 (458)
Q Consensus 222 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~ 300 (458)
.+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+.. ++ +|++|++++|.+.+..|..+..+. |+
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 9999999999999998888888999999999999999998788888876 66 899999999999888888888887 99
Q ss_pred EEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCC
Q 040185 301 ILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE 380 (458)
Q Consensus 301 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 380 (458)
.|++++|.+.+..+..+.. +++|+.|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..++
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGS-----------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp EEECCSSEEEECCGGGCCT-----------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred EEECcCCcccCcCCHHHhc-----------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 9999999998777665554 45899999999999766555 77889999999999999988999999999
Q ss_pred CCcEEeCCCCcccccCCccccCCCCCCeeecccCcC
Q 040185 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 381 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 416 (458)
+|++|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred CCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 9999999999999888876 8899999999999984
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-33 Score=279.65 Aligned_cols=355 Identities=17% Similarity=0.135 Sum_probs=268.0
Q ss_pred CcccEEEccCCCCCCCC-CccccCCCCccEEEccCCCcccC----CChhHHhhcccCcEEecCCcccccCCCCCC--CCC
Q 040185 52 FKLTFIKIRSCQPGPKF-PTWLRNQTELTTLVLNNARISDT----IPNWFWQLDLALDELDVGSNELSGRIPNSL--GFR 124 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~~~i~~~----~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~--~~~ 124 (458)
++|++|+++++.+.... ...+..+++|++|++++|.+++. ++..+... ++|++|++++|.+.+..+..+ .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 58999999999886433 23377899999999999999754 34555555 899999999999875433222 344
Q ss_pred ----CCCEEECcCCcccCCC----C---CCCCCccEEeccCCcCcCcCchhhhc----CCCCCcEEEccCCCCccCC---
Q 040185 125 ----FPGTVDLRSNRYEGPL----P---LWSFNVTKLYLNNNLFSGPIPRDFGQ----KIPFLTDLDISFNSLNGSV--- 186 (458)
Q Consensus 125 ----~L~~L~l~~n~~~~~~----~---~~l~~L~~L~L~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~i~~~~--- 186 (458)
+|++|++++|++.... + ..+++|++|++++|.+++..+..+.. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999988421 2 34669999999999987554544433 3567999999999988543
Q ss_pred -cccccCCCCCcEEEcccCcCCCCCCCcccCCcccC-----CcCCCcEEEeecccCCCC----ccccccCCCCCCEEecC
Q 040185 187 -PKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIG-----SLLSVRFLIFCNNHISGE----VPPSLKNCSMMESLDLG 256 (458)
Q Consensus 187 -~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~ 256 (458)
+..+..+++|++|++++|. +....+..+. ..++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNND------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSB------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHhhCCCCCEEECcCCC------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 4556678999999999998 3333222222 255899999999999864 46677888999999999
Q ss_pred CCcCCCCCc----hhhhhCCCCccEEEcccCcCCCc----CCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeec
Q 040185 257 DNQLSGNIP----AWIGESMPSLSILRLRSNYFNGA----IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY 328 (458)
Q Consensus 257 ~n~l~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 328 (458)
+|.+.+... ..+...+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+...- .
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l------~ 309 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL------L 309 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH------T
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh------c
Confidence 998874322 22333478999999999988853 456677789999999999998755444333210 1
Q ss_pred ccccccCEEEcccCcCCcc----CChhhccccCCCeeeCccCcCCCcccccccC-----CCCCcEEeCCCCcccc----c
Q 040185 329 STLYLVNLMDLSSNNLSRE----MPVELTRLIHLGTLNLSQNHLVGKIPTQIGK-----LEWLESLDLSKNKLSG----S 395 (458)
Q Consensus 329 ~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~-----~~~L~~L~L~~n~~~~----~ 395 (458)
...++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 1235899999999999765 4556677899999999999988655544432 6799999999999986 6
Q ss_pred CCccccCCCCCCeeecccCcCCcc
Q 040185 396 IPPSMVSLTFMNHLNLSYNNLSGE 419 (458)
Q Consensus 396 ~~~~l~~l~~L~~L~l~~n~l~~~ 419 (458)
++..+..+++|++|++++|++.+.
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHH
Confidence 778888899999999999999753
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.9e-29 Score=235.30 Aligned_cols=249 Identities=19% Similarity=0.215 Sum_probs=188.2
Q ss_pred cccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEEC
Q 040185 53 KLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDL 131 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l 131 (458)
++++++++++.+. .+|..+. +++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6778888877776 4554433 578888888888876666667666 788888888888876556555 6788888888
Q ss_pred cCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCcc--CCcccccCCCCCcEEEcccCcCCCC
Q 040185 132 RSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNG--SVPKSIGNLQQLLTLVISNNNYMSN 209 (458)
Q Consensus 132 ~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~L~~~~~~~~ 209 (458)
++|+++.......++|++|++++|.++ .++...+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~~l~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l--- 183 (330)
T 1xku_A 108 SKNQLKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--- 183 (330)
T ss_dssp CSSCCSBCCSSCCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC---
T ss_pred CCCcCCccChhhcccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc---
Confidence 888877544444578999999999888 4454444569999999999998863 5567788899999999999884
Q ss_pred CCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcC
Q 040185 210 NSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAI 289 (458)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 289 (458)
. .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+. .+
T Consensus 184 ---~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 184 ---T-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp ---C-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SC
T ss_pred ---c-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cC
Confidence 3 2344332 6899999999998877777888889999999999988833333444 3888999999999888 66
Q ss_pred CccccCCCCCCEEEcCCCcCcccCchhh
Q 040185 290 PPELCKLSALHILDLSHNNLSGFIPSCV 317 (458)
Q Consensus 290 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 317 (458)
|..+..+++|+.|++++|.+++..+..+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhc
Confidence 7778888889999999888876544443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-29 Score=238.41 Aligned_cols=249 Identities=21% Similarity=0.234 Sum_probs=186.2
Q ss_pred cccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEEC
Q 040185 53 KLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDL 131 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l 131 (458)
+++.++++++.+. .+|..+ .+++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6788888887776 556544 3678888888888876666677776 788888888888875555555 6788888888
Q ss_pred cCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCcc--CCcccccCCCCCcEEEcccCcCCCC
Q 040185 132 RSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNG--SVPKSIGNLQQLLTLVISNNNYMSN 209 (458)
Q Consensus 132 ~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~L~~~~~~~~ 209 (458)
++|++....+...++|++|++++|.++ .++...+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~~l~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l--- 184 (332)
T 2ft3_A 110 SKNHLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL--- 184 (332)
T ss_dssp CSSCCCSCCSSCCTTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC---
T ss_pred CCCcCCccCccccccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC---
Confidence 888877544444568888888888887 5555544568999999999998853 556667766 899999998883
Q ss_pred CCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcC
Q 040185 210 NSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAI 289 (458)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 289 (458)
.+ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+. .+
T Consensus 185 ---~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 185 ---TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp ---SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BC
T ss_pred ---Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ec
Confidence 32 444333 6888889999998877777888888999999999988843333444 4888999999988888 66
Q ss_pred CccccCCCCCCEEEcCCCcCcccCchhhc
Q 040185 290 PPELCKLSALHILDLSHNNLSGFIPSCVG 318 (458)
Q Consensus 290 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 318 (458)
|..+..+++|+.|++++|.+++..+..+.
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 77788888888888888888765544443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.5e-29 Score=236.28 Aligned_cols=287 Identities=20% Similarity=0.245 Sum_probs=162.2
Q ss_pred CccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCCCCCccEEeccCC
Q 040185 77 ELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNN 155 (458)
Q Consensus 77 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~ 155 (458)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..+ ++++|++|+ +++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~---------------------L~~n 88 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALV---------------------LVNN 88 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE---------------------CCSS
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEE---------------------CCCC
Confidence 4555555555554 334322 1455555555555553333222 344444444 4444
Q ss_pred cCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeeccc
Q 040185 156 LFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNH 235 (458)
Q Consensus 156 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 235 (458)
.+++..+..+. .+++|++|++++|.+. .+|..+. ++|++|++++|. +....+..+..+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 89 KISKIHEKAFS-PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR------IRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCCEECGGGST-TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC------CCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ccCccCHhHhh-CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc------cCccCHhHhCCCccCCEEECCCCc
Confidence 44422233333 3566666666666655 3343332 566666666665 333333445566666666666666
Q ss_pred CCC--CccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccC
Q 040185 236 ISG--EVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFI 313 (458)
Q Consensus 236 l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 313 (458)
++. ..+..+..+ +|++|++++|.+. .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred cccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 542 344455555 6666677776666 455443 356677777777766555566677777777777777766554
Q ss_pred chhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccC------CCCCcEEeC
Q 040185 314 PSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGK------LEWLESLDL 387 (458)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~------~~~L~~L~L 387 (458)
+..+.. +++|+.|++++|.+. .+|..+..+++|++|++++|++++..+..+.. .++|+.|++
T Consensus 234 ~~~~~~-----------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 234 NGSLSF-----------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp TTGGGG-----------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred hhHhhC-----------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 443333 346677777777665 45556677777777777777776444444433 356777788
Q ss_pred CCCccc--ccCCccccCCCCCCeeecccCc
Q 040185 388 SKNKLS--GSIPPSMVSLTFMNHLNLSYNN 415 (458)
Q Consensus 388 ~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 415 (458)
++|.+. +..+..+..+++|+.+++++|+
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 877766 3455667777777777777764
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2e-28 Score=231.71 Aligned_cols=247 Identities=23% Similarity=0.278 Sum_probs=143.1
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLL 224 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 224 (458)
+++++|++++|.+++..+..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+ . .+|..+. +
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------~-~l~~~~~--~ 121 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL------K-ELPEKMP--K 121 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC------S-BCCSSCC--T
T ss_pred CCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC------C-ccChhhc--c
Confidence 345555555555552222223 3466666666666666655556666666666666666662 2 2333222 4
Q ss_pred CCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCC--CCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEE
Q 040185 225 SVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSG--NIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHIL 302 (458)
Q Consensus 225 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 302 (458)
+|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+. .+++|++|++++|.+.. +|..+. ++|+.|
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L 197 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTEL 197 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence 66666666666665555556666666666666666642 2222333 36666666666666653 333332 566666
Q ss_pred EcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCC
Q 040185 303 DLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWL 382 (458)
Q Consensus 303 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 382 (458)
++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|..+..+++|
T Consensus 198 ~l~~n~l~~~~~~~~~~-----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 198 HLDGNKITKVDAASLKG-----------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp ECTTSCCCEECTGGGTT-----------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred ECCCCcCCccCHHHhcC-----------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 66666666554444433 335666666666666655556666667777777777666 566666666777
Q ss_pred cEEeCCCCcccccCCccccC------CCCCCeeecccCcCC
Q 040185 383 ESLDLSKNKLSGSIPPSMVS------LTFMNHLNLSYNNLS 417 (458)
Q Consensus 383 ~~L~L~~n~~~~~~~~~l~~------l~~L~~L~l~~n~l~ 417 (458)
++|++++|.+++..+..+.. .+.++.|++++|++.
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 77777777766444444432 256667777777664
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.7e-28 Score=236.72 Aligned_cols=246 Identities=22% Similarity=0.245 Sum_probs=149.3
Q ss_pred cEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCc
Q 040185 148 TKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVR 227 (458)
Q Consensus 148 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 227 (458)
..++..+..++ .+|..+ .++++.|++++|.+....+..|.++++|++|++++|. +....+..|..+++|+
T Consensus 46 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------IRTIEIGAFNGLANLN 115 (440)
T ss_dssp CEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC------CCEECGGGGTTCSSCC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc------CCccChhhccCCccCC
Confidence 44555555554 555444 2456666666666665555556666666666666666 3444445566666666
Q ss_pred EEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCc-CCCcCCccccCCCCCCEEEcCC
Q 040185 228 FLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY-FNGAIPPELCKLSALHILDLSH 306 (458)
Q Consensus 228 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~ 306 (458)
+|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|. +....+..+..+++|+.|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 6666666666444445666666666666666665 4544444446666666666633 3323333566666677777777
Q ss_pred CcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEe
Q 040185 307 NNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 386 (458)
Q Consensus 307 n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 386 (458)
|.++.. |. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 195 n~l~~~-~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 195 CNLREI-PN------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp SCCSSC-CC------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred CcCccc-cc------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 666522 21 22344566666666666666666666777777777777777655566666777777777
Q ss_pred CCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 387 LSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 387 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
|++|+++...+..+..+++|+.|++++|++.
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7777777555555666777777777777653
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1e-27 Score=236.67 Aligned_cols=246 Identities=20% Similarity=0.220 Sum_probs=145.5
Q ss_pred cEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCc
Q 040185 148 TKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVR 227 (458)
Q Consensus 148 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 227 (458)
..++.++..++ .+|..+ .+++++|++++|.+.+..+..|.++++|++|++++|. +.+..+..|..+++|+
T Consensus 57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGAFNGLASLN 126 (452)
T ss_dssp CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCC
T ss_pred cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc------cCCcChhhccCcccCC
Confidence 34455555544 445433 2456666666666665555556666666666666665 4444455566666666
Q ss_pred EEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccC-cCCCcCCccccCCCCCCEEEcCC
Q 040185 228 FLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSN-YFNGAIPPELCKLSALHILDLSH 306 (458)
Q Consensus 228 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~ 306 (458)
+|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++| .+....+..+..+++|+.|++++
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 6666666666544455666666666666666665 555444444666666666663 33322333456666667777766
Q ss_pred CcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEe
Q 040185 307 NNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 386 (458)
Q Consensus 307 n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 386 (458)
|.+.+. |. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 206 n~l~~~-~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 206 CNIKDM-PN------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp SCCSSC-CC------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred Cccccc-cc------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 666532 11 22344566666666666665666666666777777777766655556666666777777
Q ss_pred CCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 387 LSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 387 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
|++|++++..+..+..+++|++|++++|++.
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7777666444455666666777766666653
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.3e-28 Score=226.86 Aligned_cols=184 Identities=22% Similarity=0.291 Sum_probs=97.5
Q ss_pred CcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCch-hhhhCCCCccEEEcccCcCCCcCCccccCCCCCC
Q 040185 222 SLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPA-WIGESMPSLSILRLRSNYFNGAIPPELCKLSALH 300 (458)
Q Consensus 222 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 300 (458)
.+++|++|++++|.++ .++..+..+++|++|++++|.+. .++. .....+++|++|++++|.+.+..+..+..+++|+
T Consensus 76 ~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 3444445555444444 23334444555555555555554 2221 2222255555555555555544444455555555
Q ss_pred EEEcCCCcCcc-cCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCC
Q 040185 301 ILDLSHNNLSG-FIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKL 379 (458)
Q Consensus 301 ~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~ 379 (458)
.|++++|.+.+ ..|..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 154 ~L~l~~n~l~~~~~~~~~~-----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFT-----------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp EEECTTCEEGGGEECSCCT-----------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred EEECCCCccccccchhHHh-----------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 55555555543 2222222 23355555555555555555556666666666666666664444455666
Q ss_pred CCCcEEeCCCCcccccCCccccCCC-CCCeeecccCcCCc
Q 040185 380 EWLESLDLSKNKLSGSIPPSMVSLT-FMNHLNLSYNNLSG 418 (458)
Q Consensus 380 ~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~ 418 (458)
++|+.|++++|.+.+..+..+..++ +|++|++++|++..
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6666666666666655565666653 66666666666654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=227.88 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=180.2
Q ss_pred CCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcc
Q 040185 123 FRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVIS 202 (458)
Q Consensus 123 ~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~ 202 (458)
++.....+.+++.++.......++|++|++++|.++ .++...+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 334444555555555433333446677777777666 3343323357777777777777765556667777777777777
Q ss_pred cCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCcc-ccccCCCCCCEEecCCCc-CCCCCchhhhhCCCCccEEEc
Q 040185 203 NNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVP-PSLKNCSMMESLDLGDNQ-LSGNIPAWIGESMPSLSILRL 280 (458)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 280 (458)
+|. +.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +. .++...+..+++|++|++
T Consensus 109 ~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 109 YNY------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp SSC------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEE
T ss_pred CCc------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEEC
Confidence 776 333333336667777777777777764333 356677777777777774 44 444333334777777777
Q ss_pred ccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhc---cccC
Q 040185 281 RSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELT---RLIH 357 (458)
Q Consensus 281 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~ 357 (458)
++|.+.+..+..+..+++|+.|++++|.+....... +..+++|+.|++++|.+.+..+..+. ..+.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-----------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~ 250 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF-----------VDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH-----------HHHTTTEEEEEEESCBCTTCCCC------CCCC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccccchhhh-----------hhhcccccEEECCCCccccccccccccccccch
Confidence 777777666777777777777777777765322111 12245677777777777655433332 3456
Q ss_pred CCeeeCccCcCCC----cccccccCCCCCcEEeCCCCcccccCCcc-ccCCCCCCeeecccCcCCccCCC
Q 040185 358 LGTLNLSQNHLVG----KIPTQIGKLEWLESLDLSKNKLSGSIPPS-MVSLTFMNHLNLSYNNLSGEIPK 422 (458)
Q Consensus 358 L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~ 422 (458)
++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|.
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 7777777776654 36677788888999999999888 55555 57888899999999988876654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.3e-29 Score=254.66 Aligned_cols=390 Identities=10% Similarity=0.004 Sum_probs=222.6
Q ss_pred HHHhccccceeeccCCcchhhccccccCCCCCC------------CCCcccEEEccCCCCCCCCCccccC-CCC-ccEEE
Q 040185 17 WKKILISATRINKSDNSSVISEFSNLGLDSHWI------------PPFKLTFIKIRSCQPGPKFPTWLRN-QTE-LTTLV 82 (458)
Q Consensus 17 ~~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~~------------~~~~L~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~ 82 (458)
..+.++++++|+++++...... ..+|..|. .+++|++|+|++|.+.+..+.+++. +++ |++|+
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMF---NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGG---TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHhCCCCeEEEecCCcchhhc---ccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 3445667788888765432111 12333443 4567888888888776555555554 334 88888
Q ss_pred ccCCC-cccCCChhHHhhcccCcEEecCCcccccCCCC----CC-CCCCCCEEECcCCcccCCCC-------CCCCCccE
Q 040185 83 LNNAR-ISDTIPNWFWQLDLALDELDVGSNELSGRIPN----SL-GFRFPGTVDLRSNRYEGPLP-------LWSFNVTK 149 (458)
Q Consensus 83 L~~~~-i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~----~~-~~~~L~~L~l~~n~~~~~~~-------~~l~~L~~ 149 (458)
|++|. ++......+...+++|++|++++|.+++.... .. .+++|++|++++|.+.+... ..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 88775 33222222333347888888888877644322 11 56788888888777753211 12457888
Q ss_pred EeccCCcCcCcCchhhhcCCCCCcEEEccCCCCc---cCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCC
Q 040185 150 LYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLN---GSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSV 226 (458)
Q Consensus 150 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~---~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L 226 (458)
|++++|.+. .++..+. .+++|++|+++..... ......+..+++|+.|+++++. ....+..+..+++|
T Consensus 225 L~L~~~~~~-~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 225 VKVGDFEIL-ELVGFFK-AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-------PNEMPILFPFAAQI 295 (592)
T ss_dssp EECSSCBGG-GGHHHHH-HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-------TTTGGGGGGGGGGC
T ss_pred EeccCccHH-HHHHHHh-hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-------hhHHHHHHhhcCCC
Confidence 888887776 3554443 4777777777643221 1222334455556666555432 12334445556666
Q ss_pred cEEEeecccCCCCcc-ccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEccc-----------CcCCCc-CCccc
Q 040185 227 RFLIFCNNHISGEVP-PSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRS-----------NYFNGA-IPPEL 293 (458)
Q Consensus 227 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-----------~~~~~~-~~~~l 293 (458)
++|++++|.+++... ..+..+++|+.|+++ +.+.+.....+...+++|++|++++ +.+++. .....
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 666666666543222 224555666666665 3333222223333355666666652 233221 11112
Q ss_pred cCCCCCCEEEcCCCcCcccCchhhcc-CCCCceee----------------------cccccccCEEEcccCc--CCccC
Q 040185 294 CKLSALHILDLSHNNLSGFIPSCVGN-FSRTEYVF----------------------YSTLYLVNLMDLSSNN--LSREM 348 (458)
Q Consensus 294 ~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~~----------------------~~~~~~L~~L~l~~~~--l~~~~ 348 (458)
..+++|+.|+++.+.+++..+..+.. ++.+..+. +..+++|+.|++++|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 33555666666555554433333322 22222221 2346788888887543 55544
Q ss_pred Chhhc-cccCCCeeeCccCcCCC-cccccccCCCCCcEEeCCCCccccc-CCccccCCCCCCeeecccCcCCcc
Q 040185 349 PVELT-RLIHLGTLNLSQNHLVG-KIPTQIGKLEWLESLDLSKNKLSGS-IPPSMVSLTFMNHLNLSYNNLSGE 419 (458)
Q Consensus 349 ~~~l~-~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 419 (458)
...+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|++++.
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 44444 37889999999998875 3445567889999999999997654 334455789999999999998743
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=230.66 Aligned_cols=277 Identities=17% Similarity=0.186 Sum_probs=223.4
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|. +.+..+..|..+++
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGS 101 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTT
T ss_pred CCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCC
Confidence 3445788888888 7887663 589999999999986666689999999999999998 66667778999999
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCch-hhhhCCCCccEEEcccC-cCCCcCCccccCCCCCCEEE
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPA-WIGESMPSLSILRLRSN-YFNGAIPPELCKLSALHILD 303 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~ 303 (458)
|++|++++|.+++..+..++.+++|++|++++|.+. .++. ..+..+++|++|++++| .+....+..+..+++|+.|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 999999999999666666899999999999999998 7776 44445999999999999 46656677889999999999
Q ss_pred cCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccc---cCCC
Q 040185 304 LSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQI---GKLE 380 (458)
Q Consensus 304 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l---~~~~ 380 (458)
+++|.+.+..+..+.. +++|+.|++++|.+.......+..+++|++|++++|.+.+..+..+ ...+
T Consensus 181 l~~n~l~~~~~~~l~~-----------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 181 IDASDLQSYEPKSLKS-----------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp EEETTCCEECTTTTTT-----------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCCCcCccCHHHHhc-----------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 9999998777766654 4589999999999965544455568999999999999886444333 3466
Q ss_pred CCcEEeCCCCcccc----cCCccccCCCCCCeeecccCcCCccCCC-CCCCCCCCCCccccCCCCCcCCCCCCCCC
Q 040185 381 WLESLDLSKNKLSG----SIPPSMVSLTFMNHLNLSYNNLSGEIPK-VNQFQSLKDPSIYAGNLALCGDPLPKRCS 451 (458)
Q Consensus 381 ~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~c~ 451 (458)
.++.++++++.+.+ .+|+.+..+++|++|++++|++++..+. +..+++|+.++ +.+| |+.|.|.
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~-L~~N------~~~~~~~ 318 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW-LHTN------PWDCSCP 318 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSS------CBCCCHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE-eeCC------CccCcCC
Confidence 78899999988875 3677788999999999999999954443 36788888877 5555 5566663
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.1e-27 Score=219.06 Aligned_cols=258 Identities=20% Similarity=0.251 Sum_probs=162.0
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccC--CcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGS--VPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGS 222 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 222 (458)
+++++|++++|.++ .++..++.++++|++|++++|.+... .+..+..+++|++|++++|.+ . ..+..+..
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i------~-~l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV------I-TMSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE------E-EEEEEEET
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc------c-cChhhcCC
Confidence 45556666666555 44544444566666666666665522 134445566666666666662 2 23444556
Q ss_pred cCCCcEEEeecccCCCCcc-ccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC-cCCccccCCCCCC
Q 040185 223 LLSVRFLIFCNNHISGEVP-PSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-AIPPELCKLSALH 300 (458)
Q Consensus 223 l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~ 300 (458)
+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+ ..|..+..+++|+
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 6666666666666664333 3566666777777777766633333333 36677777777776664 3566677777777
Q ss_pred EEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCC
Q 040185 301 ILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE 380 (458)
Q Consensus 301 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 380 (458)
.|++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+..++
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNS-----------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp EEECTTSCCCEECTTTTTT-----------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred EEECCCCCcCCcCHHHhcC-----------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 7777777776655554443 34677777777777776666777888999999999988877777788874
Q ss_pred -CCcEEeCCCCcccccCC--ccccCCCCCCeeecccCcCCccCCC
Q 040185 381 -WLESLDLSKNKLSGSIP--PSMVSLTFMNHLNLSYNNLSGEIPK 422 (458)
Q Consensus 381 -~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~p~ 422 (458)
+|++|++++|.+..... ....-+...+.+.+..+.+.-..|.
T Consensus 248 ~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 89999999998874421 1122234455556666665544444
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.5e-26 Score=216.54 Aligned_cols=233 Identities=22% Similarity=0.258 Sum_probs=146.0
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
++++|++++|.++ .+|..++. +++|++|++++|.+. .+|..+..+++|++|++++|. +. .+|..+..+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~------l~-~lp~~l~~l~~ 151 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP------LR-ALPASIASLNR 151 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC------CC-CCCGGGGGCTT
T ss_pred ceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc------cc-cCcHHHhcCcC
Confidence 4555555555555 45554443 555555555555555 445555555555555555555 22 34444555555
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 305 (458)
|++|++++|.+.+..|..+.. ..+ +.. +..+++|++|++++|.+. .+|..+..+++|+.|+++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~------~~~---------~~~-~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLAS------TDA---------SGE-HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEE------EC----------CCC-EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE
T ss_pred CCEEECCCCCCccccChhHhh------ccc---------hhh-hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc
Confidence 555555555444444433322 000 000 112666666666666666 556666666677777777
Q ss_pred CCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEE
Q 040185 306 HNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESL 385 (458)
Q Consensus 306 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 385 (458)
+|.+.+ +|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 215 ~N~l~~-l~~~l~-----------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 215 NSPLSA-LGPAIH-----------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp SSCCCC-CCGGGG-----------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCc-Cchhhc-----------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 766663 222232 24467777777777667777778888888888888888877888888888889999
Q ss_pred eCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 386 DLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 386 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
+|++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99998888888888888888888888876553
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.2e-26 Score=215.02 Aligned_cols=223 Identities=22% Similarity=0.276 Sum_probs=154.9
Q ss_pred CCCCCEEECcCCcccCCCCCC---CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEE
Q 040185 123 FRFPGTVDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTL 199 (458)
Q Consensus 123 ~~~L~~L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 199 (458)
.++++.|++++|.+.. +|.. +++|++|++++|.++ .+|..+. .+++|++|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4689999999999984 4443 669999999999998 8888886 5999999999999998 788899999999999
Q ss_pred EcccCcCCCCCCCcccCCcccCC---------cCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhh
Q 040185 200 VISNNNYMSNNSLPGEIPDSIGS---------LLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGE 270 (458)
Q Consensus 200 ~L~~~~~~~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 270 (458)
++++|. ..+..|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..
T Consensus 156 ~L~~n~------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~ 227 (328)
T 4fcg_A 156 SIRACP------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227 (328)
T ss_dssp EEEEET------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred ECCCCC------CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence 999988 44566665543 555666666666555 44555555555555555555555 44444433
Q ss_pred CCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCCh
Q 040185 271 SMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPV 350 (458)
Q Consensus 271 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 350 (458)
+++|++|++++|.+.+.+|..+..+++|+.|++++| .+.+..|.
T Consensus 228 -l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-----------------------------------~~~~~~p~ 271 (328)
T 4fcg_A 228 -LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-----------------------------------SNLLTLPL 271 (328)
T ss_dssp -CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-----------------------------------TTCCBCCT
T ss_pred -CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC-----------------------------------Cchhhcch
Confidence 555555555555555455555555555555555554 44455555
Q ss_pred hhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccc
Q 040185 351 ELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 351 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 393 (458)
.+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6666777777777777766677777777777777777665443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.7e-26 Score=212.30 Aligned_cols=233 Identities=18% Similarity=0.168 Sum_probs=108.7
Q ss_pred CCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeeccc-CCCCccccccCCCC
Q 040185 171 FLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNH-ISGEVPPSLKNCSM 249 (458)
Q Consensus 171 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~ 249 (458)
+|++|++++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|++|++++|. +....+..+..+++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 44444444444443333334444444444444444 223333344444444444444443 33333344444444
Q ss_pred CCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecc
Q 040185 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYS 329 (458)
Q Consensus 250 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 329 (458)
|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 107 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------- 175 (285)
T 1ozn_A 107 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------- 175 (285)
T ss_dssp CCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred CCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC----------
Confidence 444444444444 222221222444555555554444333333444555555555555544332222222
Q ss_pred cccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCee
Q 040185 330 TLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 409 (458)
Q Consensus 330 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 409 (458)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+.. .-...++.+
T Consensus 176 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~ 253 (285)
T 1ozn_A 176 -LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF 253 (285)
T ss_dssp -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred -ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence 234555555555555555556666666666666666666444445666667777777777665332210 111223444
Q ss_pred ecccCcCCccCCC
Q 040185 410 NLSYNNLSGEIPK 422 (458)
Q Consensus 410 ~l~~n~l~~~~p~ 422 (458)
..+.+.+....|.
T Consensus 254 ~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 254 RGSSSEVPCSLPQ 266 (285)
T ss_dssp CSEECCCBEEESG
T ss_pred ccccCccccCCch
Confidence 4555555544444
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.3e-25 Score=217.95 Aligned_cols=229 Identities=24% Similarity=0.224 Sum_probs=137.8
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLL 224 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 224 (458)
.++++|++++|.++...+..+ .++++|++|++++|.+....+..|..+++|++|++++|. +....+..|..++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR------LTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC------CSSCCTTTSCSCS
T ss_pred CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc------CCeeCHhHhhccc
Confidence 355555555555552222333 346666666666666665555556666666666666666 3333444556666
Q ss_pred CCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEc
Q 040185 225 SVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDL 304 (458)
Q Consensus 225 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 304 (458)
+|++|++++|.++...+..+..+++|++|++++|...+.++...+..+++|++|++++|.+. .+| .+..+++|+.|++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEEC
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEEC
Confidence 66666666666664444456666666666666644333555544444666666666666666 333 3566666777777
Q ss_pred CCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcE
Q 040185 305 SHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLES 384 (458)
Q Consensus 305 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 384 (458)
++|.+.+..+..+.+ +++|+.|++++|.+.+..+..+..+++|++|++++|+++...+..+..+++|+.
T Consensus 215 s~N~l~~~~~~~~~~-----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQG-----------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TTSCCCEECTTTTTT-----------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCCccCccChhhhcc-----------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 776666555544443 335666777777666666666667777777777777776544555666777777
Q ss_pred EeCCCCccc
Q 040185 385 LDLSKNKLS 393 (458)
Q Consensus 385 L~L~~n~~~ 393 (458)
|+|++|.+.
T Consensus 284 L~L~~Np~~ 292 (440)
T 3zyj_A 284 IHLHHNPWN 292 (440)
T ss_dssp EECCSSCEE
T ss_pred EEcCCCCcc
Confidence 777777654
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.8e-25 Score=218.27 Aligned_cols=246 Identities=22% Similarity=0.167 Sum_probs=170.1
Q ss_pred EEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCC
Q 040185 128 TVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYM 207 (458)
Q Consensus 128 ~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~ 207 (458)
.++.++..++.......+++++|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-- 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-- 134 (452)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--
T ss_pred EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc--
Confidence 344444444332222234667777777766644344443 57778888888777776666677777778888887777
Q ss_pred CCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC
Q 040185 208 SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 287 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 287 (458)
+....+..|..+++|++|++++|.++...+..+..+++|+.|++++|...+.++...+..+++|+.|++++|.+.+
T Consensus 135 ----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 135 ----LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp ----CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred ----CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 4445555577777788888888877755555677777888888877544446666555557788888888887774
Q ss_pred cCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCc
Q 040185 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH 367 (458)
Q Consensus 288 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 367 (458)
. + .+..+++|+.|++++|.+.+..+..+.+ +++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG-----------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTT-----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccC-----------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 3 3 4677778888888888877666665544 3467888888888877777777888888888888888
Q ss_pred CCCcccccccCCCCCcEEeCCCCccc
Q 040185 368 LVGKIPTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 368 ~~~~~~~~l~~~~~L~~L~L~~n~~~ 393 (458)
++...+..+..+++|+.|+|++|.+.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCccChHHhccccCCCEEEccCCCcC
Confidence 87555566677888888888888765
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.6e-26 Score=208.64 Aligned_cols=269 Identities=21% Similarity=0.168 Sum_probs=207.1
Q ss_pred CEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcC
Q 040185 127 GTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNY 206 (458)
Q Consensus 127 ~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 206 (458)
++++.+++.++.......+++++|++++|.+++ ++...+..+++|++|++++|.+.+..+..+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 567888877775544456689999999999984 4444334689999999999999877788889999999999999862
Q ss_pred CCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCC
Q 040185 207 MSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 286 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 286 (458)
+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus 93 -----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 93 -----LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp -----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccc
Confidence 33344677888999999999999998777888889999999999999998 666554445899999999999988
Q ss_pred CcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccC
Q 040185 287 GAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQN 366 (458)
Q Consensus 287 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 366 (458)
+..+..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD-----------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----------CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccC-----------cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 666667888999999999999988776666554 447999999999998877777888999999999999
Q ss_pred cCCCcccccccCCCCCcEEeCCCCcccccCCccccC--CCCCCeeecccC
Q 040185 367 HLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVS--LTFMNHLNLSYN 414 (458)
Q Consensus 367 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~--l~~L~~L~l~~n 414 (458)
++....+. ......++.+..+.+.+....|+.+.+ +..++..++.+|
T Consensus 236 ~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 236 PWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 87643321 111223555556667666667776654 456666666666
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.9e-24 Score=219.00 Aligned_cols=264 Identities=23% Similarity=0.291 Sum_probs=135.4
Q ss_pred CccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCc
Q 040185 77 ELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNL 156 (458)
Q Consensus 77 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~ 156 (458)
++++|+++++.++ .+|..+. ++|++|++++|.++ .++. .+++|++|++++|++++ +|..+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCc
Confidence 4667777777765 4554332 56677777777666 4444 45666666666666653 33355566666666666
Q ss_pred CcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccC
Q 040185 157 FSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHI 236 (458)
Q Consensus 157 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 236 (458)
++ .++. .+++|+.|++++|.++ .+|.. +++|++|++++|.+ .+ +|. .+.+|+.|++++|.+
T Consensus 113 l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l------~~-l~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 113 LT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQL------AS-LPA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp CC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC------SC-CCC---CCTTCCEEECCSSCC
T ss_pred CC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcC------CC-cCC---ccCCCCEEECCCCCC
Confidence 65 3333 2456666666666655 23332 35566666666652 21 221 234555666666655
Q ss_pred CCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchh
Q 040185 237 SGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSC 316 (458)
Q Consensus 237 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 316 (458)
++ +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.+. .++. .+++|+.|++++|.+++ +|
T Consensus 174 ~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp-- 237 (622)
T 3g06_A 174 TS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP-- 237 (622)
T ss_dssp SC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC--
T ss_pred CC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC--
Confidence 52 33 23455566666666555 3432 1345555555555555 2222 12455555555555542 11
Q ss_pred hccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccC
Q 040185 317 VGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396 (458)
Q Consensus 317 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 396 (458)
..+++|+.|++++|.++. +|. .+++|++|++++|.++ .+|..+..+++|+.|+|++|.+++..
T Consensus 238 ------------~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 238 ------------VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp ------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred ------------CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 012345555555555532 222 3344555555555554 44444555555555555555554444
Q ss_pred Cccc
Q 040185 397 PPSM 400 (458)
Q Consensus 397 ~~~l 400 (458)
|..+
T Consensus 301 ~~~l 304 (622)
T 3g06_A 301 LQAL 304 (622)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.7e-24 Score=219.46 Aligned_cols=266 Identities=24% Similarity=0.297 Sum_probs=175.1
Q ss_pred cccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECc
Q 040185 53 KLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLR 132 (458)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~ 132 (458)
++++|+++++.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .++. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECc
Confidence 5777777777776 5565444 67777777777776 3444 2367777777777776 4444 56777777777
Q ss_pred CCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCC
Q 040185 133 SNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSL 212 (458)
Q Consensus 133 ~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 212 (458)
+|++++. |..+.+|++|++++|+++ .+|. .+++|++|++++|.++ .+|. .+.+|+.|++++|.+
T Consensus 110 ~N~l~~l-~~~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l------ 173 (622)
T 3g06_A 110 SNPLTHL-PALPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQL------ 173 (622)
T ss_dssp SCCCCCC-CCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC------
T ss_pred CCcCCCC-CCCCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCC------
Confidence 7777653 335667777777777776 4443 2467777777777776 3333 245677777777773
Q ss_pred cccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCcc
Q 040185 213 PGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPE 292 (458)
Q Consensus 213 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 292 (458)
.. +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+. .+|. .+++|+.|++++|.+++ +|
T Consensus 174 ~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp-- 237 (622)
T 3g06_A 174 TS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP-- 237 (622)
T ss_dssp SC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC--
T ss_pred CC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC--
Confidence 22 33 335677777777777763 332 2467777777777776 5553 25677777777777764 34
Q ss_pred ccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcc
Q 040185 293 LCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKI 372 (458)
Q Consensus 293 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 372 (458)
..+++|+.|++++|.++. +|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-lp~--------------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-LPM--------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC--------------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred -CCCCcCcEEECCCCCCCc-CCc--------------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 445677777777777763 222 2346777777777776 45666777777777777777777666
Q ss_pred cccccC
Q 040185 373 PTQIGK 378 (458)
Q Consensus 373 ~~~l~~ 378 (458)
+..+..
T Consensus 301 ~~~l~~ 306 (622)
T 3g06_A 301 LQALRE 306 (622)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.8e-27 Score=243.24 Aligned_cols=384 Identities=13% Similarity=0.008 Sum_probs=268.8
Q ss_pred CCCcccEEEccCCCCC---CCCCcc------------ccCCCCccEEEccCCCcccCCChhHHhhccc-CcEEecCCcc-
Q 040185 50 PPFKLTFIKIRSCQPG---PKFPTW------------LRNQTELTTLVLNNARISDTIPNWFWQLDLA-LDELDVGSNE- 112 (458)
Q Consensus 50 ~~~~L~~L~l~~~~~~---~~~~~~------------l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~-L~~L~L~~~~- 112 (458)
..++|++|++++|... +.+|.. ...+++|++|+|++|.+++..+..+...+++ |++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 4568999999886431 122211 1278999999999999988777777774456 9999999986
Q ss_pred cccC-CCCCC-CCCCCCEEECcCCcccCCCC-------CCCCCccEEeccCCcCcCc---CchhhhcCCCCCcEEEccCC
Q 040185 113 LSGR-IPNSL-GFRFPGTVDLRSNRYEGPLP-------LWSFNVTKLYLNNNLFSGP---IPRDFGQKIPFLTDLDISFN 180 (458)
Q Consensus 113 l~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~-------~~l~~L~~L~L~~~~~~~~---~~~~~~~~l~~L~~L~l~~~ 180 (458)
++.. .+... ++++|++|++++|.+.+... ..+++|++|++++|.+++. ....+...+++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 2211 11112 68999999999999875532 2367999999999988621 12223346899999999999
Q ss_pred CCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcC
Q 040185 181 SLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQL 260 (458)
Q Consensus 181 ~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l 260 (458)
.+. .++..+..+++|++|+++++.... ........+..+++|+.|+++++... .++..+..+++|++|++++|.+
T Consensus 231 ~~~-~l~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 231 EIL-ELVGFFKAAANLEEFCGGSLNEDI---GMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp BGG-GGHHHHHHCTTCCEEEECBCCCCT---TCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCC
T ss_pred cHH-HHHHHHhhhhHHHhhccccccccc---chHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcC
Confidence 987 467788899999999998643110 11234456677889999999886544 6777788899999999999997
Q ss_pred CCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCC-----------CcCcccCchh-hccCCCCceeec
Q 040185 261 SGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSH-----------NNLSGFIPSC-VGNFSRTEYVFY 328 (458)
Q Consensus 261 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~-~~~~~~~~~~~~ 328 (458)
.+.....+...+++|++|+++++.....++.....+++|+.|++++ +.++...... ...++.+..+.+
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 7544444455699999999994432223333446789999999993 4555332222 233455544443
Q ss_pred --------------ccccccCEEEcc----cCcCCcc-----CChhhccccCCCeeeCccCc--CCCccccccc-CCCCC
Q 040185 329 --------------STLYLVNLMDLS----SNNLSRE-----MPVELTRLIHLGTLNLSQNH--LVGKIPTQIG-KLEWL 382 (458)
Q Consensus 329 --------------~~~~~L~~L~l~----~~~l~~~-----~~~~l~~~~~L~~L~l~~n~--~~~~~~~~l~-~~~~L 382 (458)
..+++|+.|++. .+.+++. ++..+..+++|++|+++.|. +++..+..+. .+++|
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 126778888886 5566543 22335668899999997654 5544444443 48899
Q ss_pred cEEeCCCCccccc-CCccccCCCCCCeeecccCcCCcc-CCCC-CCCCCCCCCccccCCC
Q 040185 383 ESLDLSKNKLSGS-IPPSMVSLTFMNHLNLSYNNLSGE-IPKV-NQFQSLKDPSIYAGNL 439 (458)
Q Consensus 383 ~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~-~p~~-~~~~~l~~~~~~~~~~ 439 (458)
+.|++++|.+++. ++..+..+++|++|++++|++++. ++.+ ..++.|+.++ +.+|.
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~-ls~n~ 524 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW-VQGYR 524 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE-EESCB
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE-CcCCc
Confidence 9999999998863 444567889999999999998643 3333 3578888888 66665
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.3e-27 Score=241.47 Aligned_cols=381 Identities=12% Similarity=0.048 Sum_probs=236.6
Q ss_pred HHhccccceeeccCCcchhhccccccCCCCC------------CCCCcccEEEccCCCCCCCCCcccc-CCCCccEEEcc
Q 040185 18 KKILISATRINKSDNSSVISEFSNLGLDSHW------------IPPFKLTFIKIRSCQPGPKFPTWLR-NQTELTTLVLN 84 (458)
Q Consensus 18 ~~~~~~l~~l~~s~~~~~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~ 84 (458)
.+.++++++|+++++....... -.|..| ...++|++|++++|.+.+..+..+. .+++|++|+|+
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFN---LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGT---CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HhhCCCceEEeccCCCchhhcc---cccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 4456788889988865432111 122233 2356899999999988765555565 68999999999
Q ss_pred CC-CcccCCChhHHhhcccCcEEecCCcccccCCCCCC-----CCCCCCEEECcCCc--ccCCC----CCCCCCccEEec
Q 040185 85 NA-RISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-----GFRFPGTVDLRSNR--YEGPL----PLWSFNVTKLYL 152 (458)
Q Consensus 85 ~~-~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-----~~~~L~~L~l~~n~--~~~~~----~~~l~~L~~L~L 152 (458)
+| .+++.....+...+++|++|++++|.+++..+..+ .+++|++|++++|. +.... ...+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 98 66654444455434899999999998775443322 57799999999886 22111 112478999999
Q ss_pred cCCcCcCcCchhhhcCCCCCcEEEccCCCC--------------------------c----cCCcccccCCCCCcEEEcc
Q 040185 153 NNNLFSGPIPRDFGQKIPFLTDLDISFNSL--------------------------N----GSVPKSIGNLQQLLTLVIS 202 (458)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i--------------------------~----~~~~~~l~~l~~L~~L~L~ 202 (458)
++|...+.++..+. .+++|++|+++.+.. . ..++..+..+++|++|+++
T Consensus 219 ~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 219 NRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp CTTSCHHHHHHHHH-HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred CCCCcHHHHHHHHh-cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence 98833223444443 578888888665521 1 0122222356778888888
Q ss_pred cCcCCCCCCCccc-CCcccCCcCCCcEEEeecccCCCC-ccccccCCCCCCEEecCC---------CcCCCCCchhhhhC
Q 040185 203 NNNYMSNNSLPGE-IPDSIGSLLSVRFLIFCNNHISGE-VPPSLKNCSMMESLDLGD---------NQLSGNIPAWIGES 271 (458)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~---------n~l~~~~~~~~~~~ 271 (458)
+|.+ ... ....+..+++|++|++++| +++. ++.....+++|++|++.+ +.+++.....+...
T Consensus 298 ~~~l------~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~ 370 (594)
T 2p1m_B 298 YATV------QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370 (594)
T ss_dssp TCCC------CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred CCCC------CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence 7772 211 2222456778888888877 3322 222233477788887733 34443333334444
Q ss_pred CCCccEEEcccCcCCCcCCcccc-CCCCCCEEEcC--C----CcCcccCc-hhhccCCCCceeecccccccCEEEcccCc
Q 040185 272 MPSLSILRLRSNYFNGAIPPELC-KLSALHILDLS--H----NNLSGFIP-SCVGNFSRTEYVFYSTLYLVNLMDLSSNN 343 (458)
Q Consensus 272 l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~--~----n~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 343 (458)
+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.... ..+.. .+..+++|+.|++++ .
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~-------l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA-------IVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH-------HHHHCTTCCEEECCS-S
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH-------HHhhCCCccEEeecC-c
Confidence 77888887777777654444443 47788888887 3 33331110 01100 133456788888866 5
Q ss_pred CCccCChhhcc-ccCCCeeeCccCcCCCcccccc-cCCCCCcEEeCCCCcccccCCc-cccCCCCCCeeecccCcCC
Q 040185 344 LSREMPVELTR-LIHLGTLNLSQNHLVGKIPTQI-GKLEWLESLDLSKNKLSGSIPP-SMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 344 l~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~ 417 (458)
+++.....+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|++|++++|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 65554455554 7888888888888776555444 5678888888888888644333 3445788888888888874
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-26 Score=217.33 Aligned_cols=216 Identities=18% Similarity=0.126 Sum_probs=109.5
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEEC
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDL 131 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l 131 (458)
++|++|++++|.+.+..+.+++++++|++|+|++|.+++..+ +..+ ++|++|++++|.++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~Ls~n~l~----------------- 93 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQ----------------- 93 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC-TTCCEEECCSSEEE-----------------
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc-CCCCEEECcCCccc-----------------
Confidence 345555555555544334445555555555555555543322 3333 44555555554444
Q ss_pred cCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCC
Q 040185 132 RSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNS 211 (458)
Q Consensus 132 ~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 211 (458)
+..+ .++|++|++++|.+++. +.. .+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 94 ------~l~~--~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~------ 155 (317)
T 3o53_A 94 ------ELLV--GPSIETLHAANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE------ 155 (317)
T ss_dssp ------EEEE--CTTCCEEECCSSCCSEE-EEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC------
T ss_pred ------cccC--CCCcCEEECCCCccCCc-Ccc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC------
Confidence 2211 13445555555544421 111 24455566666655554444455555566666666555
Q ss_pred CcccCCccc-CCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCC
Q 040185 212 LPGEIPDSI-GSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIP 290 (458)
Q Consensus 212 ~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 290 (458)
+.+..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+. .++..+.. +++|+.|++++|.+. .+|
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~L~~N~l~-~l~ 230 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIE 230 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCC-EEC
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcc-cCcccEEECcCCccc-chh
Confidence 333333333 2355566666666665532 2 1223566666666666665 45444433 666666666666666 345
Q ss_pred ccccCCCCCCEEEcCCCcCc
Q 040185 291 PELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 291 ~~l~~l~~L~~L~l~~n~l~ 310 (458)
..+..+++|+.|++++|.+.
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCB
T ss_pred hHhhcCCCCCEEEccCCCcc
Confidence 55566666666666666655
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.3e-26 Score=212.54 Aligned_cols=250 Identities=21% Similarity=0.193 Sum_probs=132.2
Q ss_pred CCCCEEECcCCcccCCCCCC-CCCccEEeccCCcCc-CcCchhhh------cCCCCCcEEEccCCCCccCCcccc--cCC
Q 040185 124 RFPGTVDLRSNRYEGPLPLW-SFNVTKLYLNNNLFS-GPIPRDFG------QKIPFLTDLDISFNSLNGSVPKSI--GNL 193 (458)
Q Consensus 124 ~~L~~L~l~~n~~~~~~~~~-l~~L~~L~L~~~~~~-~~~~~~~~------~~l~~L~~L~l~~~~i~~~~~~~l--~~l 193 (458)
++|+++++++|.+ .+|.. ...+++|++++|.+. ..++..+. ..+++|++|++++|.+++..|..+ ..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3555666666665 33332 223555666666552 23333332 025556666666665554455443 555
Q ss_pred CCCcEEEcccCcCCCCCCCcccCCcccCCc-----CCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhh
Q 040185 194 QQLLTLVISNNNYMSNNSLPGEIPDSIGSL-----LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWI 268 (458)
Q Consensus 194 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 268 (458)
++|++|++++|. +.+. |..+..+ ++|++|++++|.+++..+..++.+++|++|++++|.+.+..+
T Consensus 121 ~~L~~L~Ls~N~------l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 190 (312)
T 1wwl_A 121 PDLNILNLRNVS------WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--- 190 (312)
T ss_dssp CCCSEEEEESCB------CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---
T ss_pred CCccEEEccCCC------Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH---
Confidence 555555555555 3332 3334333 555555555555554444555555555555555555432210
Q ss_pred hhCCCCccEEEcccCcCCCcCCccc--cCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCc
Q 040185 269 GESMPSLSILRLRSNYFNGAIPPEL--CKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSR 346 (458)
Q Consensus 269 ~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 346 (458)
.+..+ ..+++|+.|++++|.+.+.... . ...+..+++|+.|++++|.+.+
T Consensus 191 --------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-------~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 191 --------------------LISALCPLKFPTLQVLALRNAGMETPSGV-C-------SALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp --------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHH-H-------HHHHHTTCCCSEEECTTSCCCS
T ss_pred --------------------HHHHHHhccCCCCCEEECCCCcCcchHHH-H-------HHHHhcCCCCCEEECCCCcCCc
Confidence 11111 3444555555555544411000 0 0001122345555555555544
Q ss_pred cCC-hhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCc
Q 040185 347 EMP-VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 418 (458)
Q Consensus 347 ~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 418 (458)
..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 442 23445677888888888777 6676665 6788888888888744 54 7778888888888888764
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4.1e-25 Score=207.52 Aligned_cols=265 Identities=22% Similarity=0.184 Sum_probs=199.0
Q ss_pred CCEEECcCCcccCCC---CCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcc
Q 040185 126 PGTVDLRSNRYEGPL---PLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVIS 202 (458)
Q Consensus 126 L~~L~l~~n~~~~~~---~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~ 202 (458)
++..+++.+.+.... ...+++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 334455555543221 22355899999999999854445554 69999999999999875443 8889999999999
Q ss_pred cCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEccc
Q 040185 203 NNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRS 282 (458)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 282 (458)
+|.+ .+. ...++|++|++++|.+++..+. .+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 89 ~n~l------~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 89 NNYV------QEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp SSEE------EEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTT
T ss_pred CCcc------ccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCC
Confidence 9983 322 2347899999999998855443 4678999999999998 44443333488999999999
Q ss_pred CcCCCcCCccc-cCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCee
Q 040185 283 NYFNGAIPPEL-CKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTL 361 (458)
Q Consensus 283 ~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 361 (458)
|.+.+..+..+ ..+++|+.|++++|.+++... ...+++|+.|++++|.+.+..+ .+..+++|++|
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L 219 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-------------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWI 219 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-------------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEE
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccccc-------------ccccccCCEEECCCCcCCcchh-hhcccCcccEE
Confidence 99887666665 468899999999998875411 1135689999999999976544 48888999999
Q ss_pred eCccCcCCCcccccccCCCCCcEEeCCCCccc-ccCCccccCCCCCCeeecccC-cCCccCCCC
Q 040185 362 NLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS-GSIPPSMVSLTFMNHLNLSYN-NLSGEIPKV 423 (458)
Q Consensus 362 ~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~~ 423 (458)
++++|.+. .+|..+..+++|+.|++++|.+. +..+..+..+++|+.++++++ .+.+..|..
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 99999988 67888888999999999999988 667778888999999999855 444444443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-25 Score=222.48 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=117.5
Q ss_pred CCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEE
Q 040185 51 PFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVD 130 (458)
Q Consensus 51 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~ 130 (458)
+++|++|+|++|.+.+..|.+++++++|++|+|++|.+++..| +..+ ++|++|++++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 3477777777777776666677777777777777777765444 5554 677777777777663221 25666666
Q ss_pred CcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCccccc-CCCCCcEEEcccCcCCCC
Q 040185 131 LRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIG-NLQQLLTLVISNNNYMSN 209 (458)
Q Consensus 131 l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~L~~~~~~~~ 209 (458)
+++|.+.+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~---- 180 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF---- 180 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC----
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc----
Confidence 666666554444445555555555555533333333 355555555555555543443333 44555555555554
Q ss_pred CCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcC
Q 040185 210 NSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAI 289 (458)
Q Consensus 210 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 289 (458)
+++. + ....+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+.+ +
T Consensus 181 --------------------------l~~~-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 181 --------------------------IYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp --------------------------CCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCCE-E
T ss_pred --------------------------cccc-c-ccccCCCCCEEECCCCCCC-CCCHhHcC-CCCccEEEecCCcCcc-c
Confidence 4422 1 1223444555555555554 33333332 4555555555555542 3
Q ss_pred CccccCCCCCCEEEcCCCcCc
Q 040185 290 PPELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 290 ~~~l~~l~~L~~L~l~~n~l~ 310 (458)
|..+..+++|+.|++++|.+.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 444455555555555555554
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=7.6e-27 Score=238.76 Aligned_cols=378 Identities=12% Similarity=0.041 Sum_probs=236.4
Q ss_pred CCCCcccEEEccCCCCCCCC---C------------ccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCc-c
Q 040185 49 IPPFKLTFIKIRSCQPGPKF---P------------TWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSN-E 112 (458)
Q Consensus 49 ~~~~~L~~L~l~~~~~~~~~---~------------~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~-~ 112 (458)
..+++|++|++++|.....+ | .....+++|++|+|++|.+++..+..+...+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 34568999999998632111 1 113468999999999999988888878744599999999998 5
Q ss_pred cccC-CCCCC-CCCCCCEEECcCCcccCCCC-------CCCCCccEEeccCCc--CcCcCchhhhcCCCCCcEEEccCCC
Q 040185 113 LSGR-IPNSL-GFRFPGTVDLRSNRYEGPLP-------LWSFNVTKLYLNNNL--FSGPIPRDFGQKIPFLTDLDISFNS 181 (458)
Q Consensus 113 l~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~-------~~l~~L~~L~L~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~ 181 (458)
+++. .+... ++++|++|++++|.+++..+ ..+++|++|++++|. +.......+...+++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 5432 23333 68999999999999765432 235699999999996 3323333444458999999999994
Q ss_pred CccCCcccccCCCCCcEEEcccCcC-CCCCC-------------------Cc----ccCCcccCCcCCCcEEEeecccCC
Q 040185 182 LNGSVPKSIGNLQQLLTLVISNNNY-MSNNS-------------------LP----GEIPDSIGSLLSVRFLIFCNNHIS 237 (458)
Q Consensus 182 i~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~-------------------~~----~~~~~~~~~l~~L~~L~l~~~~l~ 237 (458)
....++..+..+++|++|+++++.. ...+. +. ..++..+..+++|++|++++|.++
T Consensus 223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 3224666777889999998776531 00000 00 111122223456666666666654
Q ss_pred CCc-cccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEccc---------CcCCCcCCccc-cCCCCCCEEEcCC
Q 040185 238 GEV-PPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRS---------NYFNGAIPPEL-CKLSALHILDLSH 306 (458)
Q Consensus 238 ~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~---------~~~~~~~~~~l-~~l~~L~~L~l~~ 306 (458)
+.. ...+..+++|+.|++++| +.+.....+...+++|++|++.. +.+++.....+ ..+++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 321 122345566666666665 33222222333356666666632 22222111112 2356666666655
Q ss_pred CcCcccCchhhccCCCCceeecccccccCEEEcc--c----CcCCcc-----CChhhccccCCCeeeCccCcCCCccccc
Q 040185 307 NNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLS--S----NNLSRE-----MPVELTRLIHLGTLNLSQNHLVGKIPTQ 375 (458)
Q Consensus 307 n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~l~~~-----~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 375 (458)
+.++......+. ..+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+..
T Consensus 382 ~~l~~~~~~~l~----------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 382 RQMTNAALITIA----------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp SCCCHHHHHHHH----------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred CCcCHHHHHHHH----------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 555433222221 135689999998 3 445422 122356788999999987 666555555
Q ss_pred ccC-CCCCcEEeCCCCcccccCCccc-cCCCCCCeeecccCcCCccCC-CC-CCCCCCCCCccccCCC
Q 040185 376 IGK-LEWLESLDLSKNKLSGSIPPSM-VSLTFMNHLNLSYNNLSGEIP-KV-NQFQSLKDPSIYAGNL 439 (458)
Q Consensus 376 l~~-~~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p-~~-~~~~~l~~~~~~~~~~ 439 (458)
+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++... .+ ..+++|+.++ +.+|.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~-l~~~~ 517 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW-MSSCS 517 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE-EESSC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe-eeCCC
Confidence 554 8899999999999876655554 668999999999999964322 12 3478888888 55553
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.2e-25 Score=207.77 Aligned_cols=246 Identities=22% Similarity=0.266 Sum_probs=182.4
Q ss_pred CCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccC-------CcCCCcEEEeecccCCCCcc
Q 040185 169 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIG-------SLLSVRFLIFCNNHISGEVP 241 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~l~~~~~ 241 (458)
.++|+.+++++|.+ .+|..+... |++|++++|.+. ....+..+. .+++|++|++++|.+++..|
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVR-----AARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEE-----EEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCCceeEeeccccc--ccHHHHHHH--Hhhccccccccc-----CCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 45566666666666 444444332 666666666631 122333333 56778888888888877677
Q ss_pred ccc--cCCCCCCEEecCCCcCCCCCchhhhhCC-----CCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccC-
Q 040185 242 PSL--KNCSMMESLDLGDNQLSGNIPAWIGESM-----PSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFI- 313 (458)
Q Consensus 242 ~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~- 313 (458)
..+ ..+++|++|++++|.+.+ .|..+.. + ++|++|++++|.+.+..+..+..+++|+.|++++|++.+..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWAT-RDAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSS-SSSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcc-hhHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 665 778888888888888874 4655544 4 89999999999999877789999999999999999976542
Q ss_pred -chhhccCCCCceeecccccccCEEEcccCcCCcc---CChhhccccCCCeeeCccCcCCCccc-ccccCCCCCcEEeCC
Q 040185 314 -PSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSRE---MPVELTRLIHLGTLNLSQNHLVGKIP-TQIGKLEWLESLDLS 388 (458)
Q Consensus 314 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~L~ 388 (458)
+..+ .+..+++|+.|++++|.+.+. ....+..+++|++|++++|.+.+..| ..+..+++|++|+++
T Consensus 191 ~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 191 LISAL---------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp HHHHS---------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred HHHHH---------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 1111 123466899999999999732 22334577999999999999987664 455678999999999
Q ss_pred CCcccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCccccCCC
Q 040185 389 KNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYAGNL 439 (458)
Q Consensus 389 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~ 439 (458)
+|.++ .+|..+. ++|++|++++|++++. |.+..++.|++++ +.+|+
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~-L~~N~ 307 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLS-LKGNP 307 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEE-CTTCT
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEe-ccCCC
Confidence 99998 7787766 8999999999999876 7788899999888 66653
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1e-24 Score=216.45 Aligned_cols=236 Identities=23% Similarity=0.196 Sum_probs=138.2
Q ss_pred CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCc
Q 040185 144 SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSL 223 (458)
Q Consensus 144 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 223 (458)
+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+ +..+++|++|++++|. +.+. ...
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~------l~~l-----~~~ 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY------VQEL-----LVG 98 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE------EEEE-----EEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc------CCCC-----CCC
Confidence 33667777777776644344443 46777777777776664333 6666777777777666 2221 122
Q ss_pred CCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCcccc-CCCCCCEE
Q 040185 224 LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELC-KLSALHIL 302 (458)
Q Consensus 224 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L 302 (458)
++|++|++++|.+++..+. .+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+.+..|..+. .+++|+.|
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 5667777777766644332 3456666777777666333333433 66667777776666655555554 56666677
Q ss_pred EcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCC
Q 040185 303 DLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWL 382 (458)
Q Consensus 303 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 382 (458)
++++|.+++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 175 ~Ls~N~l~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L 239 (487)
T 3oja_A 175 NLQYNFIYDVKG-------------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (487)
T ss_dssp ECTTSCCCEEEC-------------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred ecCCCccccccc-------------cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCC
Confidence 776666654311 1124456666666666655333 3556666666666666666 455556666666
Q ss_pred cEEeCCCCccc-ccCCccccCCCCCCeeecc
Q 040185 383 ESLDLSKNKLS-GSIPPSMVSLTFMNHLNLS 412 (458)
Q Consensus 383 ~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~ 412 (458)
+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666666665 3445555556666666554
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.2e-22 Score=186.85 Aligned_cols=227 Identities=22% Similarity=0.223 Sum_probs=135.3
Q ss_pred EeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEE
Q 040185 150 LYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFL 229 (458)
Q Consensus 150 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 229 (458)
++..+..++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|++|
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEE
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCc------CCccCHHHccCCcCCCEE
Confidence 344444444 455544 2467777777777765555566677777777777776 444445556666777777
Q ss_pred EeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCc-CCccccCCCCCCEEEcCCCc
Q 040185 230 IFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGA-IPPELCKLSALHILDLSHNN 308 (458)
Q Consensus 230 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~ 308 (458)
++++|.+++..+..+..+++|++|++++|.+. .++......+++|++|++++|.+.+. +|..+..+++|+.|++++|.
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 77777766555556666666666666666665 33332222356666666666655542 35555555555555555555
Q ss_pred CcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCC----eeeCccCcCCCcccccccCCCCCcE
Q 040185 309 LSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLG----TLNLSQNHLVGKIPTQIGKLEWLES 384 (458)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~----~L~l~~n~~~~~~~~~l~~~~~L~~ 384 (458)
+. +..+..+..+++|+ +|++++|.+. .++.......+|+.
T Consensus 161 l~-----------------------------------~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 161 IQ-----------------------------------SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204 (276)
T ss_dssp CC-----------------------------------EECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCSCCEEE
T ss_pred CC-----------------------------------cCCHHHhhhhhhccccceeeecCCCccc-ccCccccCCCcccE
Confidence 54 33333444444444 6677777766 33333344446777
Q ss_pred EeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCC
Q 040185 385 LDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV 423 (458)
Q Consensus 385 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 423 (458)
|++++|.+++..+..+..+++|++|++++|++....|..
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 777777777544445667777777777777777655543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.8e-23 Score=191.21 Aligned_cols=203 Identities=23% Similarity=0.273 Sum_probs=149.9
Q ss_pred ccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhh
Q 040185 190 IGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIG 269 (458)
Q Consensus 190 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 269 (458)
+.+++++++++++++.+ . .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+. .++..
T Consensus 6 ~~~l~~l~~l~~~~~~l------~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL------T-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCC------S-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--
T ss_pred ccccCCccEEECCCCCC------C-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--
Confidence 56778889999888873 3 3444443 57888999999888777778888889999999998887 55543
Q ss_pred hCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCC
Q 040185 270 ESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMP 349 (458)
Q Consensus 270 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 349 (458)
..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|.. +++|+.|++++|.+.+..+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-----------l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-----------LGELQELYLKGNELKTLPP 141 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-----------CTTCCEEECTTSCCCCCCT
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-----------CCCCCEEECCCCCCCccCh
Confidence 34888888888888887 56777788888888888888887655444443 3467778888887776666
Q ss_pred hhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 350 VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 350 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
..+..+++|++|++++|+++...+..+..+++|+.|++++|++. .+|..+...++|+.+++++|++.
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66677777888888877777433344566777777888777777 66666667777777777777764
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.3e-22 Score=185.00 Aligned_cols=177 Identities=19% Similarity=0.216 Sum_probs=140.6
Q ss_pred EEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCC
Q 040185 128 TVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYM 207 (458)
Q Consensus 128 ~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~ 207 (458)
.++..+..+.........++++|++++|.+++..+..+. .+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-- 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-- 87 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc--
Confidence 344444444433223345899999999999844444554 69999999999999987667789999999999999999
Q ss_pred CCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCC-CCchhhhhCCCCccEEEcccCcCC
Q 040185 208 SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSG-NIPAWIGESMPSLSILRLRSNYFN 286 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~~~~~ 286 (458)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+.. +++|++|++++|.+.
T Consensus 88 ----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 88 ----IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ----CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCC
T ss_pred ----cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCCCC
Confidence 566677889999999999999999997766679999999999999999984 25777765 999999999999998
Q ss_pred CcCCccccCCCCCC----EEEcCCCcCccc
Q 040185 287 GAIPPELCKLSALH----ILDLSHNNLSGF 312 (458)
Q Consensus 287 ~~~~~~l~~l~~L~----~L~l~~n~l~~~ 312 (458)
+..+..+..+++|+ .|++++|.+.+.
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred cCCHHHhhhhhhccccceeeecCCCccccc
Confidence 76666666555555 777777777643
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.1e-21 Score=179.81 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=142.1
Q ss_pred CCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCC
Q 040185 170 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSM 249 (458)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 249 (458)
...+.++++++.++ .+|..+. +++++|++++|. +....+..|..+++|++|++++|.++...+..+..+++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNK------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSC------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCC------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 35778888888887 5565443 578888888887 44455557778888888888888887555556677888
Q ss_pred CCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecc
Q 040185 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYS 329 (458)
Q Consensus 250 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 329 (458)
|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 87 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------- 155 (270)
T 2o6q_A 87 LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK---------- 155 (270)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC----------
Confidence 888888888887 666555555788888888888887666666777888888888888776544333332
Q ss_pred cccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccc
Q 040185 330 TLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 330 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 393 (458)
+++|+.|++++|.+.+..+..+..+++|++|++++|++....+..+..+++|+.|++++|.+.
T Consensus 156 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 156 -LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 346777777777776655555666677777777777766444444566667777777777665
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.9e-21 Score=178.11 Aligned_cols=202 Identities=22% Similarity=0.243 Sum_probs=125.6
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
+.+.++++++.++ .+|..+ .+++++|++++|.+....+..|..+++|++|++++|. +....+..|..+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK------LQTLPAGIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC------CSCCCTTTTSSCTT
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc------cCeeChhhhcCCCC
Confidence 4566777776666 555544 2466777777777664444566667777777777666 33333444566667
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 305 (458)
|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 777777777766555555666677777777777666 4444433346677777777776665444456666777777777
Q ss_pred CCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCC
Q 040185 306 HNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLV 369 (458)
Q Consensus 306 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 369 (458)
+|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 166 ~n~l~~~~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 166 NNQLKRVPEGAFDK-----------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCCTTTTTT-----------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCcEeChhHhcc-----------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77666544433332 346677777777766555555666667777777776654
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.5e-21 Score=178.96 Aligned_cols=202 Identities=22% Similarity=0.205 Sum_probs=175.0
Q ss_pred cCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccC
Q 040185 167 QKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKN 246 (458)
Q Consensus 167 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 246 (458)
..++++++++++++.++ .+|..+. +++++|++++|. +.+..+..|..+++|++|++++|.+++. +. ...
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~ 75 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENL------LYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGT 75 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSC------CSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCc------CCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCC
Confidence 35889999999999998 5666554 789999999999 5666678899999999999999999844 33 378
Q ss_pred CCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCcee
Q 040185 247 CSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYV 326 (458)
Q Consensus 247 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 326 (458)
+++|++|++++|.+. .+|..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------- 146 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------- 146 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------
T ss_pred CCcCCEEECCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------
Confidence 899999999999998 88876654 999999999999999777778999999999999999998665554443
Q ss_pred ecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccc
Q 040185 327 FYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 327 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 393 (458)
+++|+.|++++|.++...+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 147 ----l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 147 ----TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ----CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ----ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 558999999999998777777788999999999999999 78988888999999999999886
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.6e-22 Score=181.85 Aligned_cols=202 Identities=22% Similarity=0.242 Sum_probs=110.6
Q ss_pred CCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCC
Q 040185 169 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCS 248 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 248 (458)
+++|+.|++++|.+. .. ..+..+++|++|++++|.+ .+ ...+..+++|++|++++|.+++..+..+..++
T Consensus 40 l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l------~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKL------HD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCC------CC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCC------CC--chhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 556666666666654 22 2355566666666666552 22 12445555555555555555544444455555
Q ss_pred CCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeec
Q 040185 249 MMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFY 328 (458)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 328 (458)
+|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 110 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------------- 168 (272)
T 3rfs_A 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-------------------- 168 (272)
T ss_dssp TCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------------------
T ss_pred CCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--------------------
Confidence 5555555555555 3333322235555555555555543333334444455555555444
Q ss_pred ccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCe
Q 040185 329 STLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH 408 (458)
Q Consensus 329 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 408 (458)
+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .++.|+.
T Consensus 169 ---------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~ 226 (272)
T 3rfs_A 169 ---------------LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY 226 (272)
T ss_dssp ---------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHH
T ss_pred ---------------cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHH
Confidence 444444445566666777777776665555556666777777777776552 2456677
Q ss_pred eecccCcCCccCCCC
Q 040185 409 LNLSYNNLSGEIPKV 423 (458)
Q Consensus 409 L~l~~n~l~~~~p~~ 423 (458)
+++..|.++|.+|..
T Consensus 227 l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 227 LSEWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHHHTGGGBBCT
T ss_pred HHHHHHhCCCcccCc
Confidence 777777777666653
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.2e-21 Score=179.53 Aligned_cols=166 Identities=24% Similarity=0.259 Sum_probs=108.4
Q ss_pred ccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCC
Q 040185 244 LKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRT 323 (458)
Q Consensus 244 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 323 (458)
+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 59 l~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---- 131 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK---- 131 (272)
T ss_dssp GGGCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----
T ss_pred cccCCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc----
Confidence 334444444444444443 222 122 2444555555555444333334455555555555555554333332222
Q ss_pred ceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCC
Q 040185 324 EYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSL 403 (458)
Q Consensus 324 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l 403 (458)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 132 -------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (272)
T 3rfs_A 132 -------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204 (272)
T ss_dssp -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence 2355666666666655556667888999999999999997666677899999999999999997777778999
Q ss_pred CCCCeeecccCcCCccCCCC
Q 040185 404 TFMNHLNLSYNNLSGEIPKV 423 (458)
Q Consensus 404 ~~L~~L~l~~n~l~~~~p~~ 423 (458)
++|++|++++|++.+..|.+
T Consensus 205 ~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 205 TSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp TTCCEEECCSSCBCCCTTTT
T ss_pred cCCCEEEccCCCccccCcHH
Confidence 99999999999998877754
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=203.21 Aligned_cols=251 Identities=16% Similarity=0.156 Sum_probs=147.1
Q ss_pred cCchhhhcCCCCCcEEEccCCCCccCCc----ccccCCCCCcEEEcccCcCCCCCCCcccCCccc-------CCcCCCcE
Q 040185 160 PIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSI-------GSLLSVRF 228 (458)
Q Consensus 160 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-------~~l~~L~~ 228 (458)
.++..+. .+++|++|++++|.+....+ ..+..+++|++|++++|.+- .+.+..|..+ ..+++|++
T Consensus 23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~---~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG---RVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT---SCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC---ccccchhHHHHHHHHHHhhCCcccE
Confidence 3444443 36667777777766654322 23556667777777665421 1223333333 45667777
Q ss_pred EEeecccCCC----CccccccCCCCCCEEecCCCcCCCCCchhhhhC---C---------CCccEEEcccCcCCC-cCC-
Q 040185 229 LIFCNNHISG----EVPPSLKNCSMMESLDLGDNQLSGNIPAWIGES---M---------PSLSILRLRSNYFNG-AIP- 290 (458)
Q Consensus 229 L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~---l---------~~L~~L~l~~~~~~~-~~~- 290 (458)
|++++|.+++ .++..+..+++|++|++++|.+.+..+..+... + ++|++|++++|.+.. ..+
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 7777777765 245566667777777777777653322222221 2 677777777777652 222
Q ss_pred --ccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCC----ccCChhhccccCCCeeeCc
Q 040185 291 --PELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLS----REMPVELTRLIHLGTLNLS 364 (458)
Q Consensus 291 --~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~----~~~~~~l~~~~~L~~L~l~ 364 (458)
..+..+++|+.|++++|.+.......+.. ..+..+++|+.|++++|.++ ..++..+..+++|++|+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHH------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHH------HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 24556677777777777665211000000 01223456777777777775 3355566677777777777
Q ss_pred cCcCCCc----cccccc--CCCCCcEEeCCCCcccc----cCCccc-cCCCCCCeeecccCcCCccC
Q 040185 365 QNHLVGK----IPTQIG--KLEWLESLDLSKNKLSG----SIPPSM-VSLTFMNHLNLSYNNLSGEI 420 (458)
Q Consensus 365 ~n~~~~~----~~~~l~--~~~~L~~L~L~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~ 420 (458)
+|.+++. ++..+. .+++|++|+|++|.++. .+|..+ .++++|++|++++|++++..
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777644 344553 36777777777777775 356555 44677777777777777544
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=9.2e-23 Score=195.15 Aligned_cols=254 Identities=21% Similarity=0.213 Sum_probs=129.4
Q ss_pred EECcCCcccCCCCCC---CCCccEEeccCCcCcCcCc----hhhhcCCC-CCcEEEccCCCCccCCcccccCC-----CC
Q 040185 129 VDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGPIP----RDFGQKIP-FLTDLDISFNSLNGSVPKSIGNL-----QQ 195 (458)
Q Consensus 129 L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~~~----~~~~~~l~-~L~~L~l~~~~i~~~~~~~l~~l-----~~ 195 (458)
+.++.|.+++.+|.. ..+|++|++++|.+++..+ ..+. .++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 455666666544433 2347777777776664333 2332 455 67777777776665545444443 66
Q ss_pred CcEEEcccCcCCCCCCCcccCCcc----cCCc-CCCcEEEeecccCCCCccccc----cC-CCCCCEEecCCCcCCCCCc
Q 040185 196 LLTLVISNNNYMSNNSLPGEIPDS----IGSL-LSVRFLIFCNNHISGEVPPSL----KN-CSMMESLDLGDNQLSGNIP 265 (458)
Q Consensus 196 L~~L~L~~~~~~~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~ 265 (458)
|++|++++|. +.+..+.. +... ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+...
T Consensus 82 L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 82 VTSLNLSGNF------LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp CCEEECCSSC------GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred ccEEECcCCc------CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 7777777666 33333222 2223 566666776666664444332 22 2466666666666664333
Q ss_pred hhhh---hCCC-CccEEEcccCcCCCcCCc----cccCC-CCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCE
Q 040185 266 AWIG---ESMP-SLSILRLRSNYFNGAIPP----ELCKL-SALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNL 336 (458)
Q Consensus 266 ~~~~---~~l~-~L~~L~l~~~~~~~~~~~----~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 336 (458)
..+. ...+ +|++|++++|.+.+..+. .+... ++|+.|++++|.+.......+.. ......++|+.
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~------~l~~~~~~L~~ 229 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY------IFSSIPNHVVS 229 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH------HHHHSCTTCCE
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH------HHhcCCCCceE
Confidence 2221 1133 666666666666544332 22333 36666666666665432221111 00001235666
Q ss_pred EEcccCcCCccCCh----hhccccCCCeeeCccCcCCCc-------ccccccCCCCCcEEeCCCCccccc
Q 040185 337 MDLSSNNLSREMPV----ELTRLIHLGTLNLSQNHLVGK-------IPTQIGKLEWLESLDLSKNKLSGS 395 (458)
Q Consensus 337 L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~~~~~-------~~~~l~~~~~L~~L~L~~n~~~~~ 395 (458)
|++++|.+++..+. .+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+...
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 66666666554332 223445666666666652211 222344555566666666665543
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.6e-22 Score=191.49 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=174.2
Q ss_pred ccEEeccCCcCcCcCchhhhcCC--CCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCccc-CCcccCCc
Q 040185 147 VTKLYLNNNLFSGPIPRDFGQKI--PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGE-IPDSIGSL 223 (458)
Q Consensus 147 L~~L~L~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~l 223 (458)
++.++++++.+. +..+. .+ ++++.|++++|.+.+..+. +..+++|++|++++|. +... .+..+..+
T Consensus 49 ~~~l~l~~~~~~---~~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~------l~~~~~~~~~~~~ 117 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV------IEVSTLHGILSQC 117 (336)
T ss_dssp SSEEECTTCBCC---HHHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE------ECHHHHHHHHTTB
T ss_pred heeeccccccCC---HHHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC------cCHHHHHHHHhhC
Confidence 456666666554 22222 24 6788888888877754443 4567888888888877 3333 55566777
Q ss_pred CCCcEEEeecccCCCCccccccCCCCCCEEecCCC-cCCCC-CchhhhhCCCCccEEEcccC-cCCCc-CCccccCCC-C
Q 040185 224 LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDN-QLSGN-IPAWIGESMPSLSILRLRSN-YFNGA-IPPELCKLS-A 298 (458)
Q Consensus 224 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~ 298 (458)
++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.. +++|++|++++| .+++. .+..+..++ +
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 88888888888877667777778888888888888 56532 3433443 888888888888 77643 455567788 8
Q ss_pred CCEEEcCCCc--Cc-ccCchhhccCCCCceeecccccccCEEEcccCc-CCccCChhhccccCCCeeeCccCc-CCCccc
Q 040185 299 LHILDLSHNN--LS-GFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNN-LSREMPVELTRLIHLGTLNLSQNH-LVGKIP 373 (458)
Q Consensus 299 L~~L~l~~n~--l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~ 373 (458)
|+.|++++|. ++ ..++..+ ..+++|+.|++++|. +++..+..+..+++|++|++++|. +.+...
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~-----------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLV-----------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHH-----------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred CCEEEeCCCcccCCHHHHHHHH-----------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 8888888884 33 1222222 245678889998888 666677788889999999999994 443333
Q ss_pred ccccCCCCCcEEeCCCCcccccCCccccCC-CCCCeeecccCcCCccCCCC
Q 040185 374 TQIGKLEWLESLDLSKNKLSGSIPPSMVSL-TFMNHLNLSYNNLSGEIPKV 423 (458)
Q Consensus 374 ~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~ 423 (458)
..+..+++|++|++++| +... .+..+ ..+..|++++|++++..|..
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 46788999999999999 4432 23333 34778889999999887764
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.3e-22 Score=191.31 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=47.7
Q ss_pred EEccCCCCCCCCCccccCCCCccEEEccCCCcccCCC----hhHHhhcc-cCcEEecCCcccccCCCCCC-C-----CCC
Q 040185 57 IKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIP----NWFWQLDL-ALDELDVGSNELSGRIPNSL-G-----FRF 125 (458)
Q Consensus 57 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~----~~~~~~~~-~L~~L~L~~~~l~~~~~~~~-~-----~~~ 125 (458)
++++.+.+.+.+|..+...++|++|+|++|.+++..+ +.+... + +|++|++++|.+++..+..+ . .++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4566666666566666666667777777777766555 444444 4 67777777776664443332 1 155
Q ss_pred CCEEECcCCcccC
Q 040185 126 PGTVDLRSNRYEG 138 (458)
Q Consensus 126 L~~L~l~~n~~~~ 138 (458)
|++|++++|++.+
T Consensus 82 L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 82 VTSLNLSGNFLSY 94 (362)
T ss_dssp CCEEECCSSCGGG
T ss_pred ccEEECcCCcCCh
Confidence 5566665555543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=183.55 Aligned_cols=207 Identities=22% Similarity=0.221 Sum_probs=117.5
Q ss_pred CCCCcEEEccCCCCccCCcccc--cCCCCCcEEEcccCcCCCCCCCcccCC----cccCCcCCCcEEEeecccCCCCccc
Q 040185 169 IPFLTDLDISFNSLNGSVPKSI--GNLQQLLTLVISNNNYMSNNSLPGEIP----DSIGSLLSVRFLIFCNNHISGEVPP 242 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~~ 242 (458)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+ .+..+ ..+..+++|++|++++|.+.+..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSW------ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCC------SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccc------cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence 4567777777777766666655 6677777777777763 22222 2233466677777777766655556
Q ss_pred cccCCCCCCEEecCCCcCCCC--CchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccC
Q 040185 243 SLKNCSMMESLDLGDNQLSGN--IPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNF 320 (458)
Q Consensus 243 ~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 320 (458)
.++.+++|++|++++|++.+. ++.. ..+..+++|+.|++++|+++.. +....
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------------------~~~~~l~~L~~L~Ls~N~l~~l-~~~~~-- 217 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAA-----------------------LCPHKFPAIQNLALRNTGMETP-TGVCA-- 217 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTT-----------------------SCTTSSCCCCSCBCCSSCCCCH-HHHHH--
T ss_pred HhccCCCCCEEECCCCCCccchhhhHH-----------------------HhhhcCCCCCEEECCCCCCCch-HHHHH--
Confidence 666666666666666665421 1100 1112334444444444444311 10000
Q ss_pred CCCceeecccccccCEEEcccCcCCccCChhhccc---cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCC
Q 040185 321 SRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRL---IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIP 397 (458)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~ 397 (458)
..+..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |
T Consensus 218 -----~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 218 -----ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp -----HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred -----HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 001122345555555555544444444443 57778888888777 5666554 6788888888888732 3
Q ss_pred ccccCCCCCCeeecccCcCC
Q 040185 398 PSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 398 ~~l~~l~~L~~L~l~~n~l~ 417 (458)
. +..+++|++|++++|+++
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTS
T ss_pred h-hhhCCCccEEECcCCCCC
Confidence 3 566788888888888875
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.1e-22 Score=190.77 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=101.7
Q ss_pred cCcEEecCCcccccCCCCCCCC--CCCCEEECcCCcccCCCCCC--CCCccEEeccCCcCcCc-CchhhhcCCCCCcEEE
Q 040185 102 ALDELDVGSNELSGRIPNSLGF--RFPGTVDLRSNRYEGPLPLW--SFNVTKLYLNNNLFSGP-IPRDFGQKIPFLTDLD 176 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~--l~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~ 176 (458)
.++.++++++.+.+... ..+ ++++.+++++|.+.+..+.. +++|++|++++|.+++. ++..+ ..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~~~~--~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVT--GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCHHHH--HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSEEE
T ss_pred hheeeccccccCCHHHH--HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCEEe
Confidence 36777777766552111 122 56677777776666544433 34666666666665433 33323 3466666666
Q ss_pred ccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcc-cCCcccCCcCCCcEEEeecc-cCCCC-ccccccCCC-CCCE
Q 040185 177 ISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPG-EIPDSIGSLLSVRFLIFCNN-HISGE-VPPSLKNCS-MMES 252 (458)
Q Consensus 177 l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~-~L~~ 252 (458)
+++|.+++..+..+..+++|++|++++|.. +.+ ..+..+..+++|++|++++| .+++. .+..+..++ +|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~-----l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-----FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBS-----CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCC-----CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 666665544555555566666666666521 221 12333444555666666655 55432 334445555 5556
Q ss_pred EecCCC--cCC-CCCchhhhhCCCCccEEEcccCc-CCCcCCccccCCCCCCEEEcCCC
Q 040185 253 LDLGDN--QLS-GNIPAWIGESMPSLSILRLRSNY-FNGAIPPELCKLSALHILDLSHN 307 (458)
Q Consensus 253 L~l~~n--~l~-~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n 307 (458)
|++++| .++ +.++..+.. +++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 665555 232 123333322 5555555555555 44344444555555555555555
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=7.6e-21 Score=172.16 Aligned_cols=213 Identities=21% Similarity=0.207 Sum_probs=164.1
Q ss_pred CCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEE
Q 040185 224 LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILD 303 (458)
Q Consensus 224 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 303 (458)
...+.++++++.++ .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 35678999999998 5565443 68999999999998 45444444599999999999999987777889999999999
Q ss_pred cCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCc
Q 040185 304 LSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLE 383 (458)
Q Consensus 304 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 383 (458)
+++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 90 L~~n~l~~~~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 90 LANNQLASLPLGVFDH-----------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp CTTSCCCCCCTTTTTT-----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcccccChhHhcc-----------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 9999998665554444 55899999999999887777788999999999999999965555788999999
Q ss_pred EEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCCCCCCC------CCCCccccCCCCCcCCCCCCCCCCC
Q 040185 384 SLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQS------LKDPSIYAGNLALCGDPLPKRCSEI 453 (458)
Q Consensus 384 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~------l~~~~~~~~~~~~~~~~~~~~c~~~ 453 (458)
+|++++|.+.+..+..+..+++|++|++++|++.........+.. ....+ ..| ..+++.|....|...
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKD-GTG-QNLHESPDGVTCSDG 232 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC---------CCGGGCBBTTS
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceee-ccC-cccccCCCcCccCCC
Confidence 999999999977777889999999999999999865443322211 11111 122 346777777777543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=176.38 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=142.7
Q ss_pred CcccEEEccCCCCCCC-CCc--cccCCCCccEEEccCCCcccCCChhH--HhhcccCcEEecCCcccccCCCCC-----C
Q 040185 52 FKLTFIKIRSCQPGPK-FPT--WLRNQTELTTLVLNNARISDTIPNWF--WQLDLALDELDVGSNELSGRIPNS-----L 121 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~-~~~--~l~~~~~L~~L~L~~~~i~~~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~-----~ 121 (458)
.+++.+.+.++.+... +.. .+..+++|++|++++|.+++..|..+ ... ++|++|++++|.+++..+.. .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhh
Confidence 3567777777665421 011 01134567888888887777777666 444 77888888888777543311 1
Q ss_pred CCCCCCEEECcCCcccCCCCCC---CCCccEEeccCCcCcCc--Cc-hhhhcCCCCCcEEEccCCCCccCCcc----ccc
Q 040185 122 GFRFPGTVDLRSNRYEGPLPLW---SFNVTKLYLNNNLFSGP--IP-RDFGQKIPFLTDLDISFNSLNGSVPK----SIG 191 (458)
Q Consensus 122 ~~~~L~~L~l~~n~~~~~~~~~---l~~L~~L~L~~~~~~~~--~~-~~~~~~l~~L~~L~l~~~~i~~~~~~----~l~ 191 (458)
.+++|++|++++|++.+..+.. +++|++|++++|++.+. ++ ......+++|++|++++|.++ ..+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 4677888888888776655443 55778888888876431 11 122235777888888888775 2222 245
Q ss_pred CCCCCcEEEcccCcCCCCCCCcccCCcccCCc---CCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhh
Q 040185 192 NLQQLLTLVISNNNYMSNNSLPGEIPDSIGSL---LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWI 268 (458)
Q Consensus 192 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 268 (458)
.+++|++|++++|. +.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|+++ .+|. +
T Consensus 222 ~l~~L~~L~Ls~N~------l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~ 290 (310)
T 4glp_A 222 AGVQPHSLDLSHNS------LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ-P 290 (310)
T ss_dssp HTCCCSSEECTTSC------CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC-T
T ss_pred cCCCCCEEECCCCC------CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch-h
Confidence 66788888888887 444555555554 57888888888887 5555443 68888888888887 4444 2
Q ss_pred hhCCCCccEEEcccCcCCC
Q 040185 269 GESMPSLSILRLRSNYFNG 287 (458)
Q Consensus 269 ~~~l~~L~~L~l~~~~~~~ 287 (458)
..+++|+.|++++|.+++
T Consensus 291 -~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 -DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -TSCCCCSCEECSSTTTSC
T ss_pred -hhCCCccEEECcCCCCCC
Confidence 347888888888887763
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=167.98 Aligned_cols=86 Identities=17% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeec-ccCCCCccccccCCCC
Q 040185 171 FLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCN-NHISGEVPPSLKNCSM 249 (458)
Q Consensus 171 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~ 249 (458)
+|++|++++|.+++..+..+..+++|++|++++|.. +....+..|..+++|++|++++ |.+++..+..|..+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-----l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-----LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-----CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-----cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 444444444444433333444444444444444431 1112222344444444444444 4444333333444444
Q ss_pred CCEEecCCCcCC
Q 040185 250 MESLDLGDNQLS 261 (458)
Q Consensus 250 L~~L~l~~n~l~ 261 (458)
|++|++++|.+.
T Consensus 107 L~~L~l~~n~l~ 118 (239)
T 2xwt_C 107 LKFLGIFNTGLK 118 (239)
T ss_dssp CCEEEEEEECCC
T ss_pred CCEEeCCCCCCc
Confidence 444444444443
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.2e-22 Score=192.38 Aligned_cols=206 Identities=19% Similarity=0.189 Sum_probs=124.8
Q ss_pred cCCCCCcEEEcccCcCCCCCCCcc----cCCcccCCcCCCcEEEeecccCCCCcccc----ccCC---------CCCCEE
Q 040185 191 GNLQQLLTLVISNNNYMSNNSLPG----EIPDSIGSLLSVRFLIFCNNHISGEVPPS----LKNC---------SMMESL 253 (458)
Q Consensus 191 ~~l~~L~~L~L~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~----l~~l---------~~L~~L 253 (458)
..+++|++|++++|. +.. .++..+..+++|++|++++|.+++..+.. +..+ ++|++|
T Consensus 91 ~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNA------FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp TTCTTCCEEECCSCC------CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred hhCCcccEEECCCCc------CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 455566666666655 222 23334455566666666666654322222 2222 677777
Q ss_pred ecCCCcCCC-CCc---hhhhhCCCCccEEEcccCcCCC-----cCCccccCCCCCCEEEcCCCcCc----ccCchhhccC
Q 040185 254 DLGDNQLSG-NIP---AWIGESMPSLSILRLRSNYFNG-----AIPPELCKLSALHILDLSHNNLS----GFIPSCVGNF 320 (458)
Q Consensus 254 ~l~~n~l~~-~~~---~~~~~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~~ 320 (458)
++++|.+.+ .++ ..+.. +++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..++..+.
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-- 241 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-- 241 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHH-CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--
T ss_pred ECCCCCCCcHHHHHHHHHHHh-CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--
Confidence 777777652 223 12223 6677777777776652 12225667777778888777765 22333222
Q ss_pred CCCceeecccccccCEEEcccCcCCcc----CChhhcc--ccCCCeeeCccCcCCC----cccccc-cCCCCCcEEeCCC
Q 040185 321 SRTEYVFYSTLYLVNLMDLSSNNLSRE----MPVELTR--LIHLGTLNLSQNHLVG----KIPTQI-GKLEWLESLDLSK 389 (458)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~--~~~L~~L~l~~n~~~~----~~~~~l-~~~~~L~~L~L~~ 389 (458)
.+++|+.|++++|.+++. ++..+.. +++|++|++++|.+++ .+|..+ .++++|++|++++
T Consensus 242 ---------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 242 ---------SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp ---------GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ---------cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 345677888888877655 3445533 7889999999999886 377766 5579999999999
Q ss_pred CcccccCC--cccc-CCCCCCeeecccC
Q 040185 390 NKLSGSIP--PSMV-SLTFMNHLNLSYN 414 (458)
Q Consensus 390 n~~~~~~~--~~l~-~l~~L~~L~l~~n 414 (458)
|.+++..+ ..+. .++.++.+.+...
T Consensus 313 N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 313 NRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp SBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred CcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 99986653 3332 3566666666543
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9.3e-20 Score=170.06 Aligned_cols=209 Identities=18% Similarity=0.319 Sum_probs=134.7
Q ss_pred cEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCc
Q 040185 148 TKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVR 227 (458)
Q Consensus 148 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 227 (458)
..+.+..+.+++..... .+++|++|++++|.+. .++ .+..+++|++|++++|.+ .+. +. +..+++|+
T Consensus 22 ~~~~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i------~~~-~~-~~~l~~L~ 88 (308)
T 1h6u_A 22 IKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI------TDL-AP-LKNLTKIT 88 (308)
T ss_dssp HHHHTTCSSTTSEECHH---HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC------CCC-GG-GTTCCSCC
T ss_pred HHHHhCCCCcCceecHH---HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcC------CCC-hh-HccCCCCC
Confidence 33345555554322222 3678888888888876 344 577788888888888873 332 22 77778888
Q ss_pred EEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCC
Q 040185 228 FLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHN 307 (458)
Q Consensus 228 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 307 (458)
+|++++|.+++ .+ .+..+++|++|++++|.+. .++. +. .+++|++|++++|.+.+. +. +..+++|+.|++++|
T Consensus 89 ~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 89 ELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNA 161 (308)
T ss_dssp EEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSS
T ss_pred EEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCC-Cchh-hc-CCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCC
Confidence 88888888774 33 5777788888888888877 4543 33 377788888888777643 22 677777777777777
Q ss_pred cCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeC
Q 040185 308 NLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDL 387 (458)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L 387 (458)
.+.+..+ + ..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+. + .+..+++|+.|++
T Consensus 162 ~l~~~~~--l-----------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l 224 (308)
T 1h6u_A 162 QVSDLTP--L-----------ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTL 224 (308)
T ss_dssp CCCCCGG--G-----------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEE
T ss_pred cCCCChh--h-----------cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEc
Confidence 7664221 2 234467777777776654332 55666677777777766633 2 2566666777777
Q ss_pred CCCccc
Q 040185 388 SKNKLS 393 (458)
Q Consensus 388 ~~n~~~ 393 (458)
++|.++
T Consensus 225 ~~N~i~ 230 (308)
T 1h6u_A 225 TNQTIT 230 (308)
T ss_dssp EEEEEE
T ss_pred cCCeee
Confidence 776665
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=6.2e-20 Score=164.89 Aligned_cols=105 Identities=24% Similarity=0.306 Sum_probs=57.6
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCC-CccCCcccccCCCCCcEEEccc-CcCCCCCCCcccCCcccCC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNS-LNGSVPKSIGNLQQLLTLVISN-NNYMSNNSLPGEIPDSIGS 222 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~~~~ 222 (458)
.++++|++++|+++ .++...+..+++|++|++++|. ++...+..|..+++|++|++++ |. +....+..|..
T Consensus 31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~------l~~i~~~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN------LTYIDPDALKE 103 (239)
T ss_dssp TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT------CCEECTTSEEC
T ss_pred CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC------eeEcCHHHhCC
Confidence 35666666666665 3333323346666666666664 5544444566666666666665 55 33344445556
Q ss_pred cCCCcEEEeecccCCCCccccccCCCCCC---EEecCCC
Q 040185 223 LLSVRFLIFCNNHISGEVPPSLKNCSMME---SLDLGDN 258 (458)
Q Consensus 223 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~---~L~l~~n 258 (458)
+++|++|++++|.+++ +|. +..+++|+ +|++++|
T Consensus 104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence 6666666666666653 332 44444444 4444444
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.8e-19 Score=168.17 Aligned_cols=191 Identities=22% Similarity=0.286 Sum_probs=137.9
Q ss_pred CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCc
Q 040185 144 SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSL 223 (458)
Q Consensus 144 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 223 (458)
+++|++|++++|.++ .++ .+. .+++|++|++++|.+.+ .+. +..+++|++|++++|.+ .+. ..+..+
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l------~~~--~~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPL------KNV--SAIAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCC------SCC--GGGTTC
T ss_pred cCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcC------CCc--hhhcCC
Confidence 557888888888876 444 343 58888888888888874 333 77788888888888873 221 357778
Q ss_pred CCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEE
Q 040185 224 LSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILD 303 (458)
Q Consensus 224 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 303 (458)
++|++|++++|.+++. + .+..+++|++|++++|.+. .++. +. .+++|+.|++++|.+.+. +. +..+++|+.|+
T Consensus 107 ~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLK 179 (308)
T ss_dssp TTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEE
Confidence 8888888888888743 3 3778888888888888887 4544 33 378888888888887743 33 77888888888
Q ss_pred cCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCC
Q 040185 304 LSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLV 369 (458)
Q Consensus 304 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 369 (458)
+++|.+.+..+ +..+++|+.|++++|.+.+.. .+..+++|++|++++|+++
T Consensus 180 l~~n~l~~~~~-------------l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 180 ADDNKISDISP-------------LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCSSCCCCCGG-------------GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCCccCcChh-------------hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 88888764322 234567888888888886544 3677888888888888876
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=4.2e-19 Score=160.63 Aligned_cols=159 Identities=22% Similarity=0.252 Sum_probs=102.8
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLL 224 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 224 (458)
.++++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..|..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ------LASLPLGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCT
T ss_pred CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc------ccccChhHhcccC
Confidence 3555566666655533333333 46777777777777765555566677777777777776 4444455566677
Q ss_pred CCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEc
Q 040185 225 SVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDL 304 (458)
Q Consensus 225 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 304 (458)
+|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 7777777777777555555666777777777777776 555443334677777777777777555556667777777777
Q ss_pred CCCcCcc
Q 040185 305 SHNNLSG 311 (458)
Q Consensus 305 ~~n~l~~ 311 (458)
++|.+..
T Consensus 187 ~~N~~~c 193 (251)
T 3m19_A 187 FGNQFDC 193 (251)
T ss_dssp CSCCBCT
T ss_pred eCCceeC
Confidence 7777654
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1e-18 Score=166.20 Aligned_cols=240 Identities=19% Similarity=0.125 Sum_probs=145.0
Q ss_pred CEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCc-ccccCCCCCcE-EEcccC
Q 040185 127 GTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP-KSIGNLQQLLT-LVISNN 204 (458)
Q Consensus 127 ~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~-L~L~~~ 204 (458)
++++.++++++......+.++++|++++|+++ .++...+.++++|++|++++|.+.+.++ .+|.+++++++ +.+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45666666666432233457888888888877 6666544567888888888887654433 45667777654 444455
Q ss_pred cCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCC-CcCCCCCchhhhhCC-CCccEEEccc
Q 040185 205 NYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGD-NQLSGNIPAWIGESM-PSLSILRLRS 282 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l-~~L~~L~l~~ 282 (458)
. +....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+. .++...+..+ ..++.|++++
T Consensus 91 ~------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 91 N------LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp T------CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCS
T ss_pred c------ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccc
Confidence 5 4455566777778888888888877755554555555666777755 3444 5554433333 3567777777
Q ss_pred CcCCCcCCccccCCCCCCEEEcCC-CcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCee
Q 040185 283 NYFNGAIPPELCKLSALHILDLSH-NNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTL 361 (458)
Q Consensus 283 ~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 361 (458)
|.++. ++.......+|+.+++++ |.+....+..|. .+++|+.|++++|.++...+.. +.+|+.|
T Consensus 164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~-----------~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L 228 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFH-----------GASGPVILDISRTRIHSLPSYG---LENLKKL 228 (350)
T ss_dssp SCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTT-----------TEECCSEEECTTSCCCCCCSSS---CTTCCEE
T ss_pred ccccC-CChhhccccchhHHhhccCCcccCCCHHHhc-----------cCcccchhhcCCCCcCccChhh---hccchHh
Confidence 77773 344444556677777764 444432223333 3446777777777775543333 3455555
Q ss_pred eCccCcCCCcccccccCCCCCcEEeCCCC
Q 040185 362 NLSQNHLVGKIPTQIGKLEWLESLDLSKN 390 (458)
Q Consensus 362 ~l~~n~~~~~~~~~l~~~~~L~~L~L~~n 390 (458)
.+.++.....+|. +..+++|+.+++.++
T Consensus 229 ~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 229 RARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 5555533335553 566777777777654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.4e-19 Score=170.47 Aligned_cols=241 Identities=17% Similarity=0.164 Sum_probs=178.5
Q ss_pred ccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccC-CcccCCcCC
Q 040185 147 VTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEI-PDSIGSLLS 225 (458)
Q Consensus 147 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~~~l~~ 225 (458)
-++++.++++++ .+|..+ .+++++|++++|+|+...+.+|.++++|++|+|++|.+ .+.+ +..|..+++
T Consensus 11 ~~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i------~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 11 NRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV------LEVIEADVFSNLPK 80 (350)
T ss_dssp TTEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT------CCEECTTSBCSCTT
T ss_pred CCEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC------CCccChhHhhcchh
Confidence 357888888888 888776 46899999999999855556789999999999999984 3333 456778888
Q ss_pred CcE-EEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEccc-CcCCCcCCccccCCC-CCCEE
Q 040185 226 VRF-LIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRS-NYFNGAIPPELCKLS-ALHIL 302 (458)
Q Consensus 226 L~~-L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L 302 (458)
+++ +.+.+|.++...+..|..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+. .++.|
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 775 566778888777888999999999999999998 66554443366778888866 456544445566654 68889
Q ss_pred EcCCCcCcccCchhhccCCCCceeecccccccCEEEccc-CcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCC
Q 040185 303 DLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSS-NNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEW 381 (458)
Q Consensus 303 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 381 (458)
++++|+++...+..+. ..+|+.+++.+ |.++...+..+..+++|++|++++|+++ .+|. ..+.+
T Consensus 160 ~L~~N~i~~i~~~~f~------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~ 224 (350)
T 4ay9_X 160 WLNKNGIQEIHNSAFN------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLEN 224 (350)
T ss_dssp ECCSSCCCEECTTSST------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTT
T ss_pred ccccccccCCChhhcc------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhcc
Confidence 9999998854433221 23688888875 5665555566788899999999999988 5554 23556
Q ss_pred CcEEeCCCCcccccCCccccCCCCCCeeecccC
Q 040185 382 LESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 414 (458)
Q Consensus 382 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 414 (458)
|++|.+.++.-.+.+|. +..+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 77777777655556664 778888999888753
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=6.8e-19 Score=176.27 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=32.1
Q ss_pred CeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCC
Q 040185 359 GTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLT 404 (458)
Q Consensus 359 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~ 404 (458)
++|++++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77777777777 5677666677777778877777776666665543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.3e-18 Score=150.09 Aligned_cols=133 Identities=23% Similarity=0.269 Sum_probs=66.7
Q ss_pred CCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCC
Q 040185 170 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSM 249 (458)
Q Consensus 170 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 249 (458)
++|++|++++|.+.+..+..+..+++|++|++++|. +....+..|..+++|++|++++|.+++..+..+..+++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 355555555555553333344555555555555555 33333333445555555555555555443344455555
Q ss_pred CCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcC
Q 040185 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNL 309 (458)
Q Consensus 250 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 309 (458)
|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 102 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 102 LKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 555555555555 33333323355555555555555543333345555555555555543
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=8.3e-19 Score=155.19 Aligned_cols=132 Identities=23% Similarity=0.268 Sum_probs=61.6
Q ss_pred CccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhc
Q 040185 274 SLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELT 353 (458)
Q Consensus 274 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 353 (458)
+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.+ +++|+.|++++|.+....+..+.
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-----------l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----------LRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-----------CSSCCEEECCSSCCCCCCTTTTT
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----------CcCCCEEECCCCcCCccCHhHcc
Confidence 3444444444444333334444444444444444444333333222 12344444444444433333344
Q ss_pred cccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcC
Q 040185 354 RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 354 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 416 (458)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 455555555555555544444555555555555555555544444455555555555555554
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.6e-18 Score=149.91 Aligned_cols=178 Identities=21% Similarity=0.246 Sum_probs=113.4
Q ss_pred EEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCC
Q 040185 128 TVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYM 207 (458)
Q Consensus 128 ~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~ 207 (458)
.++.+++.++.......+++++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-- 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-- 87 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc--
Confidence 3444444444333333446666666666666 4444443457777777777777775444556677777777777777
Q ss_pred CCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCC
Q 040185 208 SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 287 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 287 (458)
+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus 88 ----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 88 ----LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp ----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred ----CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee-
Confidence 44444455667777777777777777555555677777777777777777 555554444777788887777554
Q ss_pred cCCccccCCCCCCEEEcCCCcCcccCchhhccC
Q 040185 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNF 320 (458)
Q Consensus 288 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 320 (458)
..+++|+.|+++.|.+++.+|..++.+
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 334567777777777776666555443
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=153.87 Aligned_cols=133 Identities=24% Similarity=0.213 Sum_probs=72.1
Q ss_pred ccEEEcccCcCCCcCC-ccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhc
Q 040185 275 LSILRLRSNYFNGAIP-PELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELT 353 (458)
Q Consensus 275 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 353 (458)
++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..|.. +++|+.|++++|.+.+..+..+.
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------ASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------CTTCCEEECCSSCCCCCCGGGGT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------CCCCCEEECCCCccCccCHhHhc
Confidence 3444444444443322 22344444555555555444333333322 22455555555555444455555
Q ss_pred cccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCc
Q 040185 354 RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 418 (458)
Q Consensus 354 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 418 (458)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++..
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 66666666666666665555666666666666666666665556666666666666666666653
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=2.8e-17 Score=164.63 Aligned_cols=187 Identities=26% Similarity=0.340 Sum_probs=110.1
Q ss_pred cCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCC
Q 040185 102 ALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNS 181 (458)
Q Consensus 102 ~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 181 (458)
+|++|++++|.+++ +|..+ +++|++|++++|.++. +|..+++|++|++++|.+++ +|. +. .+|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~~-ip~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALIS-LPELPASLEYLDACDNRLST-LPE-LP---ASLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSC
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCcc-cccccCCCCEEEccCCCCCC-cch-hh---cCCCEEECCCCc
Confidence 55666666665553 44322 2556666666666552 33445566666666666653 454 32 166666666666
Q ss_pred CccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCC
Q 040185 182 LNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 182 i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (458)
+++ +|. .+++|++|++++|. +.+ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~------l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQ------LTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSC------CSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCC-CCC---cCccccEEeCCCCc------cCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 663 443 45666666666666 322 332 34566777777776664 444 43 66777777777766
Q ss_pred CCCchhhhhCCCCc-------cEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccC
Q 040185 262 GNIPAWIGESMPSL-------SILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNF 320 (458)
Q Consensus 262 ~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 320 (458)
.+|. +. .+| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 194 -~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 -SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 6655 32 144 77777777777 456666667777777777777776666655543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=6e-17 Score=149.67 Aligned_cols=187 Identities=22% Similarity=0.331 Sum_probs=116.9
Q ss_pred cEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCE
Q 040185 173 TDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMES 252 (458)
Q Consensus 173 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 252 (458)
..+.+....+.+. ..+..+++|++|++++|.+ ... +.+..+++|++|++++|.+++..+ +..+++|++
T Consensus 27 ~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i------~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~ 94 (291)
T 1h6t_A 27 IKDNLKKKSVTDA--VTQNELNSIDQIIANNSDI------KSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94 (291)
T ss_dssp HHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCC------CCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HHHHhcCCCcccc--cchhhcCcccEEEccCCCc------ccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCE
Confidence 3344555554422 2345677888888888873 222 236667788888888888774433 777788888
Q ss_pred EecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeeccccc
Q 040185 253 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLY 332 (458)
Q Consensus 253 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
|++++|.+. .++. +. .+++|++|++++|.+.+. +.+..+++|+.|++++|.+.+. .. +..++
T Consensus 95 L~l~~n~l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~-----------l~~l~ 156 (291)
T 1h6t_A 95 LFLDENKVK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV-----------LSRLT 156 (291)
T ss_dssp EECCSSCCC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG-----------GGGCT
T ss_pred EECCCCcCC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh-----------hccCC
Confidence 888888776 4443 33 377777777777777643 4566777777777777776643 11 22344
Q ss_pred ccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccc
Q 040185 333 LVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 393 (458)
+|+.|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++.
T Consensus 157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 56666666666654333 5566666666666666652 33 2556666666666666665
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3.1e-17 Score=151.55 Aligned_cols=190 Identities=23% Similarity=0.343 Sum_probs=141.6
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
++..+.+....+++..+.. .+++|+.|++++|.+.. ++ .+..+++|++|++++|. +.+.. . +..+++
T Consensus 25 ~~~~~~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~------l~~~~-~-l~~l~~ 91 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK------LTDIK-P-LANLKN 91 (291)
T ss_dssp HHHHHHTTCSCTTSEECHH---HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC------CCCCG-G-GTTCTT
T ss_pred HHHHHHhcCCCcccccchh---hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCc------cCCCc-c-cccCCC
Confidence 3444456666555332222 37789999999998873 33 47788999999999988 43332 2 788889
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 305 (458)
|++|++++|.+++ ++ .+..+++|++|++++|.+. .++ .+.. +++|+.|++++|.+.+. ..+..+++|+.|+++
T Consensus 92 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 92 LGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 164 (291)
T ss_dssp CCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence 9999999998874 33 4888899999999999887 553 3443 88999999999988854 578888999999999
Q ss_pred CCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCC
Q 040185 306 HNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVG 370 (458)
Q Consensus 306 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 370 (458)
+|.+.+..+ + ..+++|+.|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 165 ~N~l~~~~~--l-----------~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 165 DNQISDIVP--L-----------AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCCCGG--G-----------TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccccchh--h-----------cCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 998875433 2 3456899999999988664 3 47888899999999998774
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1e-16 Score=142.66 Aligned_cols=85 Identities=27% Similarity=0.363 Sum_probs=42.5
Q ss_pred ccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecc
Q 040185 333 LVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLS 412 (458)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 412 (458)
+|+.|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 3444444444444433344444555555555555555 445455555555555555555553333344555555555555
Q ss_pred cCcCCc
Q 040185 413 YNNLSG 418 (458)
Q Consensus 413 ~n~l~~ 418 (458)
+|++..
T Consensus 168 ~N~~~c 173 (229)
T 3e6j_A 168 GNPWDC 173 (229)
T ss_dssp TSCBCT
T ss_pred CCCccC
Confidence 555543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=3.8e-17 Score=155.97 Aligned_cols=157 Identities=26% Similarity=0.281 Sum_probs=91.2
Q ss_pred CccEEeccCCcCcCcCchhhhc-CCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLL 224 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 224 (458)
.+++|++++|.++ .++...+. .+++|++|++++|.+....+..|..+++|++|++++|. +....+..|..++
T Consensus 40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH------LHTLDEFLFSDLQ 112 (361)
T ss_dssp TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCT
T ss_pred CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc------CCcCCHHHhCCCc
Confidence 4555555555555 23333222 46666666666666665445556666666666666666 3444444566666
Q ss_pred CCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhh---hCCCCccEEEcccCcCCCcCCccccCCCC--C
Q 040185 225 SVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIG---ESMPSLSILRLRSNYFNGAIPPELCKLSA--L 299 (458)
Q Consensus 225 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L 299 (458)
+|++|++++|.+++..+..|..+++|+.|++++|.+. .+|...+ ..+++|+.|++++|.+....+..+..++. +
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 6666666666666555556666666666666666666 5555543 23666666666666666443344555554 3
Q ss_pred CEEEcCCCcCc
Q 040185 300 HILDLSHNNLS 310 (458)
Q Consensus 300 ~~L~l~~n~l~ 310 (458)
+.|++++|.+.
T Consensus 192 ~~l~l~~N~~~ 202 (361)
T 2xot_A 192 NGLYLHNNPLE 202 (361)
T ss_dssp TTEECCSSCEE
T ss_pred ceEEecCCCcc
Confidence 56666666654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.3e-16 Score=161.37 Aligned_cols=189 Identities=24% Similarity=0.356 Sum_probs=111.7
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
++..+.+..+.+.+..+. . .+++|+.|++++|.+. .++ .+..+++|+.|+|++|. +.+..+ +..+++
T Consensus 22 ~l~~l~l~~~~i~~~~~~--~-~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~------l~~~~~--l~~l~~ 88 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ--N-ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNK------LTDIKP--LTNLKN 88 (605)
T ss_dssp HHHHHHTTCSCTTSEECH--H-HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSC------CCCCGG--GGGCTT
T ss_pred HHHHHhccCCCcccccch--h-cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCC------CCCChh--hccCCC
Confidence 455556666666533332 1 3677777888877776 333 46777777777777777 333222 666777
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 305 (458)
|+.|++++|.+.+ ++ .+..+++|+.|++++|.+. .++ .+.. +++|+.|++++|.+.+. ..+..+++|+.|+++
T Consensus 89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 7777777777763 33 5666777777777777776 443 2333 66777777777766643 456666666666666
Q ss_pred CCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCC
Q 040185 306 HNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLV 369 (458)
Q Consensus 306 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 369 (458)
+|.+.+..| + ..+++|+.|+|++|.+.+. ..+..+++|+.|++++|++.
T Consensus 162 ~N~l~~~~~--l-----------~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 162 DNQISDIVP--L-----------AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SSCCCCCGG--G-----------TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCcCCCchh--h-----------ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 666654322 1 1233555555555555432 23444555555555555544
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=4e-16 Score=138.83 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=119.7
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
..+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|. +....+..|..+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQ 89 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTT
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCC
Confidence 4556777777766 666654 3678888888888886667778888888888888888 44444456777888
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 305 (458)
|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+.. +++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 888888888888666666788888888888888888 78877755 8888888888888886655667888888888888
Q ss_pred CCcCccc
Q 040185 306 HNNLSGF 312 (458)
Q Consensus 306 ~n~l~~~ 312 (458)
+|.+...
T Consensus 168 ~N~~~c~ 174 (229)
T 3e6j_A 168 GNPWDCE 174 (229)
T ss_dssp TSCBCTT
T ss_pred CCCccCC
Confidence 8887643
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=140.30 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=96.6
Q ss_pred cEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCc-ccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCC
Q 040185 148 TKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP-KSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSV 226 (458)
Q Consensus 148 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L 226 (458)
+.++++++.++ .+|..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|. +.+..+..|..+++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCC
Confidence 35555555554 445433 2345666666666654322 335666666666666666 444445566666677
Q ss_pred cEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCC
Q 040185 227 RFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSH 306 (458)
Q Consensus 227 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 306 (458)
++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..|..+..+++|+.|++++
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 7777777777665566667777777777777777633333333 377777777777777766667777777788888887
Q ss_pred CcCccc
Q 040185 307 NNLSGF 312 (458)
Q Consensus 307 n~l~~~ 312 (458)
|.+...
T Consensus 163 N~l~c~ 168 (220)
T 2v70_A 163 NPFNCN 168 (220)
T ss_dssp CCEECS
T ss_pred cCCcCC
Confidence 777643
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=2.5e-16 Score=139.23 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=98.0
Q ss_pred cEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCc
Q 040185 148 TKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVR 227 (458)
Q Consensus 148 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 227 (458)
+.++++++.++ .+|..+ .+++++|++++|.+....+..|..+++|++|++++|. +.+..+..|..+++|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLN 83 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC------CCEECTTTTTTCSSCC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc------CCCcCHHHhhCCcCCC
Confidence 45566666655 555544 2466777777777665555566667777777777776 4455566666777777
Q ss_pred EEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCC
Q 040185 228 FLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHN 307 (458)
Q Consensus 228 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 307 (458)
+|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 7777777776554455666777777777777776 333333333677777777777777555556677777777777777
Q ss_pred cCc
Q 040185 308 NLS 310 (458)
Q Consensus 308 ~l~ 310 (458)
.+.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 665
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1e-16 Score=139.29 Aligned_cols=152 Identities=16% Similarity=0.301 Sum_probs=86.1
Q ss_pred CcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCE
Q 040185 222 SLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHI 301 (458)
Q Consensus 222 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 301 (458)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++ .+.. +++|++|++++|.+.+..+..+..+++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~--- 113 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PISG-LSNLERLRIMGKDVTSDKIPNLSGLTS--- 113 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGTT-CTTCCEEEEECTTCBGGGSCCCTTCTT---
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhhc-CCCCCEEEeECCccCcccChhhcCCCC---
Confidence 3445555555555554 333 3445555555555555443 222 2222 444444544444444333344444444
Q ss_pred EEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCc-CCCcccccccCCC
Q 040185 302 LDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH-LVGKIPTQIGKLE 380 (458)
Q Consensus 302 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~ 380 (458)
|+.|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..++
T Consensus 114 --------------------------------L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~ 159 (197)
T 4ezg_A 114 --------------------------------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP 159 (197)
T ss_dssp --------------------------------CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS
T ss_pred --------------------------------CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC
Confidence 5555555555544455566677777888888776 55 444 567778
Q ss_pred CCcEEeCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 381 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
+|++|++++|.+.+ ++ .+..+++|++|++++|++.
T Consensus 160 ~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 160 ELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 88888888888773 33 5777888888888888764
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=2.1e-16 Score=159.96 Aligned_cols=191 Identities=23% Similarity=0.310 Sum_probs=148.1
Q ss_pred CCEEECcCCcccCCCCC-CCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccC
Q 040185 126 PGTVDLRSNRYEGPLPL-WSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNN 204 (458)
Q Consensus 126 L~~L~l~~n~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~ 204 (458)
+..+.++.+.+....+. .+.+|++|++++|.+. .++ .+. .+++|+.|++++|.+.+..+ +..+++|+.|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCT-TGG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CCh-HHc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 33445555555543332 2678999999999987 444 444 59999999999999985433 889999999999999
Q ss_pred cCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCc
Q 040185 205 NYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY 284 (458)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~ 284 (458)
.+ .. ++.+..+++|+.|++++|.+.+ + +.+..+++|+.|++++|.+. .+ ..+. .+++|+.|++++|.
T Consensus 98 ~l------~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~l~-~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 98 KI------KD--LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQ 164 (605)
T ss_dssp CC------CC--CTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GGGG-SCTTCSEEECCSSC
T ss_pred CC------CC--ChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccC-Cc-hhhc-ccCCCCEEECcCCc
Confidence 84 32 2468889999999999999985 3 35888999999999999998 55 3344 49999999999999
Q ss_pred CCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCC
Q 040185 285 FNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMP 349 (458)
Q Consensus 285 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 349 (458)
+.+..+ +..+++|+.|++++|.+.+. + . +..+++|+.|++++|.+.+...
T Consensus 165 l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~-----------l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 165 ISDIVP--LAGLTKLQNLYLSKNHISDL-R-A-----------LAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBC-G-G-----------GTTCTTCSEEECCSEEEECCCC
T ss_pred CCCchh--hccCCCCCEEECcCCCCCCC-h-H-----------HccCCCCCEEEccCCcCcCCcc
Confidence 986544 89999999999999998753 2 2 3346689999999999866533
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1e-16 Score=152.93 Aligned_cols=176 Identities=26% Similarity=0.224 Sum_probs=100.3
Q ss_pred cEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCcccccc-CCCCCCEEecCCCcCCCCCchhhhhCCCCc
Q 040185 197 LTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLK-NCSMMESLDLGDNQLSGNIPAWIGESMPSL 275 (458)
Q Consensus 197 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 275 (458)
++++++++.+ . .+|..+. ..++.|++++|.+++..+..+. .+++|+.|++++|.+. .++...+..+++|
T Consensus 21 ~~l~c~~~~l------~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQL------P-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCC------S-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTC
T ss_pred CEEEeCCCCc------C-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCC
Confidence 5666666662 2 2444332 3466777777777655555555 6677777777777776 4444333346677
Q ss_pred cEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhh---
Q 040185 276 SILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVEL--- 352 (458)
Q Consensus 276 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l--- 352 (458)
+.|++++|.+....+..+..+++|+.|++++|.+....+..|.+ +++|+.|++++|.+.+..+..+
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-----------l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----------MAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----------CTTCCEEECCSSCCCSCCGGGTC--
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-----------cccCCEEECCCCcCCeeCHHHhcCc
Confidence 77777777666555555666667777777776666544444333 3356666666666654333333
Q ss_pred ccccCCCeeeCccCcCCCcccccccCCCC--CcEEeCCCCccc
Q 040185 353 TRLIHLGTLNLSQNHLVGKIPTQIGKLEW--LESLDLSKNKLS 393 (458)
Q Consensus 353 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~L~~n~~~ 393 (458)
..+++|++|++++|.+....+..+..++. ++.|++++|.+.
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 34566666666666665333334444444 355666666554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.9e-16 Score=136.40 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=92.9
Q ss_pred ccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhh
Q 040185 190 IGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIG 269 (458)
Q Consensus 190 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 269 (458)
...+++|++|++++|.+ . .++ .+..+++|++|++++|.++ .. ..+..+++|++|++++|.+.+..+..+.
T Consensus 40 ~~~l~~L~~L~l~~n~i------~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 40 EAQMNSLTYITLANINV------T-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHHTCCEEEEESSCC------S-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhhcCCccEEeccCCCc------c-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhc
Confidence 46789999999999984 3 334 5788999999999999876 33 4788999999999999999865666666
Q ss_pred hCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCc-Cc
Q 040185 270 ESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNN-LS 310 (458)
Q Consensus 270 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~ 310 (458)
. +++|++|++++|.+.+..+..+..+++|+.|++++|. +.
T Consensus 110 ~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~ 150 (197)
T 4ezg_A 110 G-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150 (197)
T ss_dssp T-CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC
T ss_pred C-CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc
Confidence 5 9999999999999997777888999999999999987 44
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.7e-16 Score=144.31 Aligned_cols=168 Identities=20% Similarity=0.257 Sum_probs=86.5
Q ss_pred CCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCC
Q 040185 193 LQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESM 272 (458)
Q Consensus 193 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 272 (458)
+.++..++++++. +.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++. +. .+
T Consensus 18 l~~l~~l~l~~~~------i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l 84 (263)
T 1xeu_A 18 LANAVKQNLGKQS------VTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DL 84 (263)
T ss_dssp HHHHHHHHHTCSC------TTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TC
T ss_pred HHHHHHHHhcCCC------cccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hc-cC
Confidence 4445555666555 2221 1 3455666666666666665 333 4556666666666666665 4443 32 36
Q ss_pred CCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhh
Q 040185 273 PSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVEL 352 (458)
Q Consensus 273 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 352 (458)
++|++|++++|.+.+ ++. +.. ++|+.|++++|.+.+. + . +..+++|+.|++++|.+++. ..+
T Consensus 85 ~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~-----------l~~l~~L~~L~Ls~N~i~~~--~~l 146 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-S-----------LIHLKNLEILSIRNNKLKSI--VML 146 (263)
T ss_dssp SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-G-----------GTTCTTCCEEECTTSCCCBC--GGG
T ss_pred CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-h-----------hcCcccccEEECCCCcCCCC--hHH
Confidence 666666666666653 222 222 5566666666655532 1 1 12233555555555555432 134
Q ss_pred ccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCccc
Q 040185 353 TRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 393 (458)
Q Consensus 353 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 393 (458)
..+++|++|++++|++.+. ..+..+++|+.|++++|.+.
T Consensus 147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 4455555555555555432 33445555555555555554
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=8.8e-19 Score=176.29 Aligned_cols=203 Identities=17% Similarity=0.170 Sum_probs=124.6
Q ss_pred cCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcc-------------cccCCCCCC-CCCCCCEEE-CcCCccc
Q 040185 73 RNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNE-------------LSGRIPNSL-GFRFPGTVD-LRSNRYE 137 (458)
Q Consensus 73 ~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~-------------l~~~~~~~~-~~~~L~~L~-l~~n~~~ 137 (458)
..+++|+.|+|++|+++ .+|..+..+ ++|++|++++|. ..+..+..+ .+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 56778888888888886 678888877 788888886664 222222222 344555555 3333221
Q ss_pred CCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCC
Q 040185 138 GPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIP 217 (458)
Q Consensus 138 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 217 (458)
+|+.+.+.+|.++ .++ ...|+.|++++|.+++ +|. +..+++|++|++++|. +. .+|
T Consensus 424 --------~L~~l~l~~n~i~-~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~------l~-~lp 479 (567)
T 1dce_A 424 --------DLRSKFLLENSVL-KME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR------LR-ALP 479 (567)
T ss_dssp --------HHHHHHHHHHHHH-HHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC------CC-CCC
T ss_pred --------hhhhhhhhccccc-ccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc------cc-ccc
Confidence 3334444444433 111 1246777777777763 454 6777777777777777 33 456
Q ss_pred cccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCC-chhhhhCCCCccEEEcccCcCCCcCCc---cc
Q 040185 218 DSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNI-PAWIGESMPSLSILRLRSNYFNGAIPP---EL 293 (458)
Q Consensus 218 ~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l 293 (458)
..++.+++|+.|++++|.+++ +| .++.+++|+.|++++|.+.+.. |..+.. +++|+.|++++|.+.+..+. .+
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc-CCCCCEEEecCCcCCCCccHHHHHH
Confidence 667777777777777777774 45 6777777777777777777332 555554 77777777777777644321 12
Q ss_pred cCCCCCCEEEc
Q 040185 294 CKLSALHILDL 304 (458)
Q Consensus 294 ~~l~~L~~L~l 304 (458)
..+++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 33677777653
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=5.7e-16 Score=140.79 Aligned_cols=148 Identities=22% Similarity=0.237 Sum_probs=84.9
Q ss_pred CCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEE
Q 040185 51 PFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVD 130 (458)
Q Consensus 51 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~ 130 (458)
+++|++|++++|.+. .++ .++.+++|++|++++|.+++..+ +..+ ++|++|++++|+++
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l-~~L~~L~L~~N~l~---------------- 98 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDL-TKLEELSVNRNRLK---------------- 98 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC-SSCCEEECCSSCCS----------------
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccC-CCCCEEECCCCccC----------------
Confidence 345555555555554 233 34555555555555555543322 3333 45555555555544
Q ss_pred CcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCC
Q 040185 131 LRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNN 210 (458)
Q Consensus 131 l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 210 (458)
+..+....+|++|++++|.++ .++ .+. .+++|++|++++|++++. + .+..+++|++|++++|.+
T Consensus 99 -------~l~~~~~~~L~~L~L~~N~l~-~~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i---- 162 (263)
T 1xeu_A 99 -------NLNGIPSACLSRLFLDNNELR-DTD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI---- 162 (263)
T ss_dssp -------CCTTCCCSSCCEEECCSSCCS-BSG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC----
T ss_pred -------CcCccccCcccEEEccCCccC-CCh-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC----
Confidence 321111145666666666665 232 333 577888888888887743 3 577778888888888773
Q ss_pred CCcccCCcccCCcCCCcEEEeecccCCCC
Q 040185 211 SLPGEIPDSIGSLLSVRFLIFCNNHISGE 239 (458)
Q Consensus 211 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 239 (458)
.+. ..+..+++|+.|++++|.++..
T Consensus 163 --~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 --TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --cch--HHhccCCCCCEEeCCCCcccCC
Confidence 333 4566777778888877777643
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.1e-16 Score=150.76 Aligned_cols=218 Identities=13% Similarity=0.071 Sum_probs=121.0
Q ss_pred CCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeeccc----CCCCccccc
Q 040185 169 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNH----ISGEVPPSL 244 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----l~~~~~~~l 244 (458)
+++|+.+++.. .++.....+|.++++|+.+++++|. +....+..|....++..+...... ........|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~------i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT------APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS------CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC------ccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 66677777766 5554555566666777777776665 333444555555555444433311 111122234
Q ss_pred cCCCCCC-EEecCCCcCCCCCchhhhhC---CCCccEEEcccCcCCCcCCccc-cCCCCCCEEEcCCCcCcccCchhhcc
Q 040185 245 KNCSMME-SLDLGDNQLSGNIPAWIGES---MPSLSILRLRSNYFNGAIPPEL-CKLSALHILDLSHNNLSGFIPSCVGN 319 (458)
Q Consensus 245 ~~l~~L~-~L~l~~n~l~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~ 319 (458)
..+..|+ .+.+... +.++..++.. ..++..+.+.+.-.. .....+ ..+++|+.+++++|.++.+...+|.+
T Consensus 173 ~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 173 IEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp EESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred ccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 4444554 3333322 1333333221 334455555443111 111111 12566777777766666444444443
Q ss_pred CCCCceeecccccccCEEEcccCcCCccCChhhccccCCC-eeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCc
Q 040185 320 FSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLG-TLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPP 398 (458)
Q Consensus 320 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 398 (458)
+.+|+.+++.++ +..+....|.+|++|+ ++.+.+ .++...+..|..|++|+.+++++|.+....+.
T Consensus 249 -----------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 249 -----------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp -----------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred -----------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 335666666665 5555666777788888 888877 56544456777888888888888888766666
Q ss_pred cccCCCCCCeee
Q 040185 399 SMVSLTFMNHLN 410 (458)
Q Consensus 399 ~l~~l~~L~~L~ 410 (458)
.|.++++|+.+.
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 788888888775
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.1e-16 Score=146.86 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=130.3
Q ss_pred CCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCc
Q 040185 144 SFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSL 223 (458)
Q Consensus 144 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 223 (458)
+.+|++|++.+ .++ .++...+.++++|+.++++.|.+....+.+|..+.++.++......... .........|..+
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~--~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR--FKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH--TSTTTTTSCEEES
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh--ccccccccccccc
Confidence 56777777777 665 5566655678888888888888776667777777777777665422100 0111122334444
Q ss_pred CCCc-EEEeecccCCCCccccc----cCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCC
Q 040185 224 LSVR-FLIFCNNHISGEVPPSL----KNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSA 298 (458)
Q Consensus 224 ~~L~-~L~l~~~~l~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 298 (458)
..|+ .+.+.... .++..+ ....++..+.+.++-.. .....+...+++|+.+++++|.++......|.++.+
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 4555 33332221 111111 12344555555543211 112222223667777777777666555556777777
Q ss_pred CCEEEcCCCcCcccCchhhccCCCCceeecccccccC-EEEcccCcCCccCChhhccccCCCeeeCccCcCCCccccccc
Q 040185 299 LHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVN-LMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIG 377 (458)
Q Consensus 299 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 377 (458)
|+.+++.+| +..+.+.+|.+ +.+|+ .+++.+ .+..+.+..|.+|++|++++++++.+....+..|.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~-----------~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSN-----------CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTT-----------CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred CCEEECCcc-cceehHHHhhC-----------ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 777777766 55444444444 33566 677766 56556667788888888888888887755556777
Q ss_pred CCCCCcEEeC
Q 040185 378 KLEWLESLDL 387 (458)
Q Consensus 378 ~~~~L~~L~L 387 (458)
.+++|+.+..
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 8888887763
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=8.1e-18 Score=169.26 Aligned_cols=106 Identities=25% Similarity=0.371 Sum_probs=69.6
Q ss_pred CCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCC
Q 040185 195 QLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPS 274 (458)
Q Consensus 195 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 274 (458)
.|++|++++|. +.+ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .+| .+.. +++
T Consensus 442 ~L~~L~Ls~n~------l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~-l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKD------LTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVAN-LPR 509 (567)
T ss_dssp TCSEEECTTSC------CSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTT-CSS
T ss_pred CceEEEecCCC------CCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCC-CCC
Confidence 46677777766 332 343 666677777777777776 55666777777777777777776 455 4433 677
Q ss_pred ccEEEcccCcCCCcC-CccccCCCCCCEEEcCCCcCccc
Q 040185 275 LSILRLRSNYFNGAI-PPELCKLSALHILDLSHNNLSGF 312 (458)
Q Consensus 275 L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~ 312 (458)
|+.|++++|.+.+.. |..+..+++|+.|++++|.+++.
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 777777777776554 66677777777777777766644
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=131.81 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=77.3
Q ss_pred cEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccc
Q 040185 276 SILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRL 355 (458)
Q Consensus 276 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 355 (458)
+.++++++.+. .+|..+. ++++.|++++|.+. .+|..+. .+++|+.|++++|.+++..+..+..+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~-----------~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELS-----------NYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGG-----------GCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhh-----------cccCCCEEECCCCcCCEeCHhHccCC
Confidence 45677777666 4454332 46777777777765 3333332 23456666666666666555566666
Q ss_pred cCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCC
Q 040185 356 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 356 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 417 (458)
++|++|++++|.++...+..+..+++|++|+|++|.+....+..+..+++|+.|++++|++.
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666666666666544555666666666666666666444444666666666666666654
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=1.5e-15 Score=131.21 Aligned_cols=131 Identities=24% Similarity=0.292 Sum_probs=104.8
Q ss_pred CEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCc-cccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecc
Q 040185 251 ESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPP-ELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYS 329 (458)
Q Consensus 251 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 329 (458)
+.++++++.+. .+|..+ ..++++|++++|.+.+..+. .+..+++|+.|++++|.+++..|..+.++
T Consensus 11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA--------- 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC---------
T ss_pred CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc---------
Confidence 68899999887 888765 34889999999988865553 47888899999999998887766665543
Q ss_pred cccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccC
Q 040185 330 TLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 396 (458)
Q Consensus 330 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 396 (458)
++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus 78 --~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 78 --SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp --TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred --ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 47888888888888877777888888888888888888777778888888888888888887543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=9.3e-15 Score=123.33 Aligned_cols=134 Identities=24% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCCccEEEcccCcCC-CcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCCh
Q 040185 272 MPSLSILRLRSNYFN-GAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPV 350 (458)
Q Consensus 272 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 350 (458)
++++++|++++|.+. +.+|..+..+++|+.|++++|.+.+. .. +..+++|+.|++++|.+.+..+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~-----------~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN-----------LPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS-----------CCCCSSCCEEEEESCCCCSCCCH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh-----------hccCCCCCEEECcCCcCchHHHH
Confidence 345566666666554 34455555566666666666665532 11 22344666667777766665666
Q ss_pred hhccccCCCeeeCccCcCCCc-ccccccCCCCCcEEeCCCCcccccCC---ccccCCCCCCeeecccCcCCc
Q 040185 351 ELTRLIHLGTLNLSQNHLVGK-IPTQIGKLEWLESLDLSKNKLSGSIP---PSMVSLTFMNHLNLSYNNLSG 418 (458)
Q Consensus 351 ~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~ 418 (458)
.+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++..
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 667788899999999988742 22678888999999999999885444 368889999999999998764
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=2.5e-14 Score=123.50 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=87.7
Q ss_pred CEEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcC
Q 040185 127 GTVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNY 206 (458)
Q Consensus 127 ~~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 206 (458)
++++++++++.........++++|++++|.+++..+..++..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~- 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK- 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-
Confidence 3445555444322222233666666666666533333333457788888888888776667777777888888888777
Q ss_pred CCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCc
Q 040185 207 MSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIP 265 (458)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 265 (458)
+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 90 -----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 -----IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp -----CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred -----CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 555566667777788888888888776667777777778888888877765443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1.7e-14 Score=121.76 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=83.4
Q ss_pred CCCCcEEEccCCCCc-cCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCC
Q 040185 169 IPFLTDLDISFNSLN-GSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNC 247 (458)
Q Consensus 169 l~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 247 (458)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+ .+. ..+..+++|++|++++|.+++..|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l------~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL------ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC------CCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC------CCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 456777777777765 45565566677777777777763 222 456666777777777777765556556566
Q ss_pred CCCCEEecCCCcCCCCCc--hhhhhCCCCccEEEcccCcCCCcCC---ccccCCCCCCEEEcCCCcCc
Q 040185 248 SMMESLDLGDNQLSGNIP--AWIGESMPSLSILRLRSNYFNGAIP---PELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~l~ 310 (458)
++|++|++++|.+. .++ ..+. .+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 95 ~~L~~L~Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 PNLTHLNLSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTCCEEECBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCEEeccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777777777766 443 2333 36667777777776664333 25666667777776666654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=2e-14 Score=118.73 Aligned_cols=129 Identities=22% Similarity=0.201 Sum_probs=88.4
Q ss_pred CCCccEEEcccCcCC-CcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCCh
Q 040185 272 MPSLSILRLRSNYFN-GAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPV 350 (458)
Q Consensus 272 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 350 (458)
.++++.|++++|.+. +.+|..+..+++|+.|++++|.+.+. .. +..+++|+.|++++|.+.+..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-----------~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN-----------LPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT-----------CCCCTTCCEEECCSSCCCSCTHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh-----------hhcCCCCCEEECCCCcccchHHH
Confidence 345666666666665 45555666667777777777766543 11 22345677777777777665666
Q ss_pred hhccccCCCeeeCccCcCCCc-ccccccCCCCCcEEeCCCCcccccCC---ccccCCCCCCeeeccc
Q 040185 351 ELTRLIHLGTLNLSQNHLVGK-IPTQIGKLEWLESLDLSKNKLSGSIP---PSMVSLTFMNHLNLSY 413 (458)
Q Consensus 351 ~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~ 413 (458)
.+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 666788888888888888742 23677888888888888888875544 3677788888888763
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=2.5e-15 Score=155.87 Aligned_cols=120 Identities=26% Similarity=0.286 Sum_probs=63.5
Q ss_pred cccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCch
Q 040185 187 PKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPA 266 (458)
Q Consensus 187 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 266 (458)
+..+..++.|+.|+|++|.+ . .++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l------~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQI------F-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSCC------S-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred hhhhccCCCCcEEECCCCCC------C-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 34445555555555555552 2 33334445555555555555555 44555555556666666666555 5555
Q ss_pred hhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhh
Q 040185 267 WIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCV 317 (458)
Q Consensus 267 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 317 (458)
.+.. +++|++|+|++|.+. .+|..+..+++|+.|++++|.+.+..|..+
T Consensus 288 ~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 288 ELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 5544 556666666666555 445555666666666666666655544443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.4e-14 Score=118.14 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCcEEEccCCCCc-cCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCC
Q 040185 170 PFLTDLDISFNSLN-GSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCS 248 (458)
Q Consensus 170 ~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~ 248 (458)
++|++|++++|.+. +.+|..+..+++|++|++++|.+ .+. ..+..+++|++|++++|.+++..|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL------TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC------CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC------CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 45666666666665 34555555666666666666652 222 4455556666666666666544555555566
Q ss_pred CCCEEecCCCcCCCCCc--hhhhhCCCCccEEEcccCcCCCcCC---ccccCCCCCCEEEcC
Q 040185 249 MMESLDLGDNQLSGNIP--AWIGESMPSLSILRLRSNYFNGAIP---PELCKLSALHILDLS 305 (458)
Q Consensus 249 ~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 305 (458)
+|++|++++|.+. .++ ..+.. +++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i~-~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIK-DLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCC-SHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCC-ChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666666655 322 23332 5566666666665554333 245555555555554
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=5.5e-15 Score=153.27 Aligned_cols=154 Identities=21% Similarity=0.233 Sum_probs=97.3
Q ss_pred cCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCcccc
Q 040185 215 EIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELC 294 (458)
Q Consensus 215 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 294 (458)
..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.+. .+|..+.. +++|+.|+|++|.+. .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN-LSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG-GTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC-CCCCCEEeCcCCcCC-ccChhhc
Confidence 34566777788888888888877 55556667788888888888887 77776655 888888888888877 6677788
Q ss_pred CCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhcccc-CCCeeeCccCcCCCccc
Q 040185 295 KLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLI-HLGTLNLSQNHLVGKIP 373 (458)
Q Consensus 295 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~ 373 (458)
.+++|+.|+|++|.+. .+|..|.. +++|+.|+|++|.+.+..|..+.... .+..+++++|.+.+.+|
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~-----------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGN-----------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTS-----------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhc-----------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 8888888888888776 44544443 44677788888887766666554432 12235677777765555
Q ss_pred ccccCCCCCcEEeCCCC
Q 040185 374 TQIGKLEWLESLDLSKN 390 (458)
Q Consensus 374 ~~l~~~~~L~~L~L~~n 390 (458)
. .|+.|+++.|
T Consensus 359 ~------~l~~l~l~~n 369 (727)
T 4b8c_D 359 H------ERRFIEINTD 369 (727)
T ss_dssp C------C---------
T ss_pred c------ccceeEeecc
Confidence 3 3555556555
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=2.8e-13 Score=116.86 Aligned_cols=126 Identities=29% Similarity=0.383 Sum_probs=67.7
Q ss_pred EEECcCCcccCCCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCC
Q 040185 128 TVDLRSNRYEGPLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYM 207 (458)
Q Consensus 128 ~L~l~~n~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~ 207 (458)
+++++++.+.........++++|++++|.++ .+|..+. .+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-- 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-- 89 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc--
Confidence 3444444443222222335555555555555 4454443 46666666666666664444555666666666666665
Q ss_pred CCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCC
Q 040185 208 SNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (458)
+....+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 90 ----l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 ----LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ----CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ----cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 34444445555666666666666665444444555556666666655554
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2.3e-13 Score=115.76 Aligned_cols=133 Identities=25% Similarity=0.248 Sum_probs=74.2
Q ss_pred CCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecc
Q 040185 250 MESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYS 329 (458)
Q Consensus 250 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 329 (458)
.+.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------- 67 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL----------------- 67 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-----------------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-----------------
Confidence 456667777666 566443 35667777777766654444556666666666666665533
Q ss_pred cccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCee
Q 040185 330 TLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 409 (458)
Q Consensus 330 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 409 (458)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 68 ------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 68 ------------------PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp ------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------------------ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 33334445555555555555553333344555556666666665553333334555566666
Q ss_pred ecccCcCCccCC
Q 040185 410 NLSYNNLSGEIP 421 (458)
Q Consensus 410 ~l~~n~l~~~~p 421 (458)
++++|++.+..|
T Consensus 130 ~l~~N~~~~~~~ 141 (177)
T 2o6r_A 130 WLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCeeccCc
Confidence 666665554443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.9e-13 Score=114.36 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=55.6
Q ss_pred CCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcC
Q 040185 145 FNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLL 224 (458)
Q Consensus 145 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~ 224 (458)
+++++|++++|+++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|. +.+..+..+..++
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~------l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK------LQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC------ccccCHHHhhCCc
Confidence 34555555555544 3333322345555555555555553333344555555555555555 3333333445555
Q ss_pred CCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCC
Q 040185 225 SVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSG 262 (458)
Q Consensus 225 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 262 (458)
+|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 55555555555554333344555555555555555543
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=6.7e-12 Score=120.74 Aligned_cols=239 Identities=8% Similarity=0.050 Sum_probs=110.4
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
+|+.+.+..+ ++ .+....+.+ .+|+.+.+.. .+......+|.++++|+.+++.+|. +.......|. ..+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~------l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK------ITKLPASTFV-YAG 204 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC------CSEECTTTTT-TCC
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc------ceEechhhEe-ecc
Confidence 4555555443 22 233332222 2466666654 3433444555666666666666555 2223333333 355
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 305 (458)
|+.+.+..+ ++.....+|..+++|+.+.+..+ +. .++...+.. .+|+.+.+.+ .+.......|.++++|+.+++.
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEE
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeC
Confidence 666666533 33344445566666666666553 33 444444442 5566666633 2333444555666666666665
Q ss_pred CCcCc-----ccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCC
Q 040185 306 HNNLS-----GFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE 380 (458)
Q Consensus 306 ~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 380 (458)
++.+. .....+| ..+++|+.+++.. .+..+....|.+|.+|+.+.+..+ +.......|..+
T Consensus 280 ~~~~~~~~~~~I~~~aF-----------~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~- 345 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCL-----------EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT- 345 (401)
T ss_dssp SSCCCCCTTCEECTTTT-----------TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-
T ss_pred CccccCCcccEECHHHh-----------hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-
Confidence 55432 1111112 2233444444442 233333444445555555555333 332223344444
Q ss_pred CCcEEeCCCCcccccCCccccCCC-CCCeeecccC
Q 040185 381 WLESLDLSKNKLSGSIPPSMVSLT-FMNHLNLSYN 414 (458)
Q Consensus 381 ~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n 414 (458)
+|+.+++.+|.........+.+++ .++.|.+..+
T Consensus 346 ~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 555555555544433333344442 3444444433
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=8e-12 Score=120.20 Aligned_cols=262 Identities=10% Similarity=0.080 Sum_probs=130.7
Q ss_pred CCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCCC---CCCCCCccEEe
Q 040185 75 QTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGPL---PLWSFNVTKLY 151 (458)
Q Consensus 75 ~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~L~~L~ 151 (458)
+..++.+.+.+ .++.....+|.. .+|+.+.+..+ +..-....+.-.+|+.+.+.. .+.... ...+.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~--~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRN--SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhccc--CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34555555543 233333333443 24555555544 332223333223455555543 222111 12234566666
Q ss_pred ccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEe
Q 040185 152 LNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIF 231 (458)
Q Consensus 152 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 231 (458)
+.+|.++ .++...+. ..+|+.+.+..+ +......+|.++++|+.+.+..+ +.......|.. .+|+.+.+
T Consensus 187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-------l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-------VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp CTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-------CCEECTTTTTT-CCCSEEEE
T ss_pred cCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-------ccCcccccccc-CCccEEEe
Confidence 6665555 44444443 456666666533 44344455666666666666543 12223334444 45666666
Q ss_pred ecccCCCCccccccCCCCCCEEecCCCcCC----CCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCC
Q 040185 232 CNNHISGEVPPSLKNCSMMESLDLGDNQLS----GNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHN 307 (458)
Q Consensus 232 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 307 (458)
. +.++.....+|..+++|+.+.+.++.+. ..++...+.++++|+.+.+.+ .+.......|.++.+|+.+.+..+
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 3 2333344455666666666666555432 124445555566666666663 244344455666666666666443
Q ss_pred cCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhcccc-CCCeeeCccCc
Q 040185 308 NLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLI-HLGTLNLSQNH 367 (458)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~n~ 367 (458)
++.....+|. .+ +|+.+++.++.+.......+.+++ +++.|.+..+.
T Consensus 334 -l~~I~~~aF~-----------~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 334 -VTQINFSAFN-----------NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -CCEECTTSSS-----------SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -ccEEcHHhCC-----------CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3323222222 23 566666666666555555555553 56666666554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=4.1e-13 Score=114.07 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=77.7
Q ss_pred ccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCC
Q 040185 244 LKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRT 323 (458)
Q Consensus 244 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 323 (458)
+..+++|+.|++++|.+. .++. +....++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~------------- 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC------------- 77 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-------------
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-------------
Confidence 345556666666666665 4433 222133566666666655532 34455555555555555444
Q ss_pred ceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccc--cccCCCCCcEEeCCCCcccccCCcc--
Q 040185 324 EYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPT--QIGKLEWLESLDLSKNKLSGSIPPS-- 399 (458)
Q Consensus 324 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L~L~~n~~~~~~~~~-- 399 (458)
+..+..+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+. .+|..
T Consensus 78 ----------------------~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~ 133 (176)
T 1a9n_A 78 ----------------------RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRL 133 (176)
T ss_dssp ----------------------EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHH
T ss_pred ----------------------ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHH
Confidence 333333456667777777777765 4454 5666777777777777776 44443
Q ss_pred --ccCCCCCCeeecccCcCC
Q 040185 400 --MVSLTFMNHLNLSYNNLS 417 (458)
Q Consensus 400 --l~~l~~L~~L~l~~n~l~ 417 (458)
+..+++|++|++++|+..
T Consensus 134 ~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHHCTTCSEETTEECCHH
T ss_pred HHHHHCCccceeCCCcCCHH
Confidence 666777777777777654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=4.9e-13 Score=113.62 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCCCcEEEccCCCCccCCcccccCC-CCCcEEEcccCcCCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCC
Q 040185 169 IPFLTDLDISFNSLNGSVPKSIGNL-QQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNC 247 (458)
Q Consensus 169 l~~L~~L~l~~~~i~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l 247 (458)
+++|++|++++|.+. .++. +..+ ++|++|++++|. +.+. ..+..+++|++|++++|.+++..+..+..+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~------l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNE------IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSC------CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCC------CCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 555666666666655 2332 3222 356666666665 2222 345555566666666666653333333556
Q ss_pred CCCCEEecCCCcCCCCCch--hhhhCCCCccEEEcccCcCCCcCCc----cccCCCCCCEEEcCCCcC
Q 040185 248 SMMESLDLGDNQLSGNIPA--WIGESMPSLSILRLRSNYFNGAIPP----ELCKLSALHILDLSHNNL 309 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~n~l 309 (458)
++|++|++++|.+. .+|. .+.. +++|+.|++++|.+. ..+. .+..+++|+.|++++|..
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666666664 4443 3332 556666666666555 2333 255556666666655544
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=1.6e-11 Score=118.43 Aligned_cols=310 Identities=7% Similarity=-0.031 Sum_probs=156.1
Q ss_pred CccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCC-CCCCCCEEECcCCcccCCCCCCCC--
Q 040185 69 PTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSL-GFRFPGTVDLRSNRYEGPLPLWSF-- 145 (458)
Q Consensus 69 ~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~-- 145 (458)
..+|.+|++|+++.|.+ .++.....+|..+ .+|+.+++..+ ++.-....+ ++..|+.+.+..+ +.......+.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 34566666677776653 3444444555554 66666666543 221222222 4555555544322 1111111111
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
.+..+..... .. .+....+..+++|+.+.+..+... ....+|.++.+|+.+.+..+- .......|.....
T Consensus 140 ~~~~~~~~~~-~~-~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~~-------~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 140 DFKEITIPEG-VT-VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRNL-------KIIRDYCFAECIL 209 (394)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTTC-------CEECTTTTTTCTT
T ss_pred cccccccCcc-cc-ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCCc-------eEeCchhhccccc
Confidence 1222222111 11 222223335667777777654322 344556666777777665432 1223344555556
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLS 305 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 305 (458)
|+.+.+..+... .........+|+.+.+... +. .+....+..+..++.+.+..+... .....+..+..++.+...
T Consensus 210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred cceeecCCCceE--eehhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence 665555443321 1122223456666666543 22 333334444666777766655332 344456666666666655
Q ss_pred CCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEE
Q 040185 306 HNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESL 385 (458)
Q Consensus 306 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 385 (458)
...+. ... +..+.+|+.+.+..+ +..+....|.+|.+|+.+.+..+ ++......|..|.+|+.+
T Consensus 285 ~~~i~---~~~-----------F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 285 SVIVP---EKT-----------FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp SSEEC---TTT-----------TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred ceeec---ccc-----------ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 44321 111 223445666665443 43444556677777777777644 443334566777777777
Q ss_pred eCCCCcccccCCccccCCCCCCeeecccC
Q 040185 386 DLSKNKLSGSIPPSMVSLTFMNHLNLSYN 414 (458)
Q Consensus 386 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 414 (458)
.+..+ +......+|.+|++|+.+++..+
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 77665 55445566777777777777544
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.36 E-value=3.9e-11 Score=115.66 Aligned_cols=325 Identities=14% Similarity=0.024 Sum_probs=215.9
Q ss_pred CCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCC
Q 040185 48 WIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPG 127 (458)
Q Consensus 48 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~ 127 (458)
+..+.+|+++.|..+ +...-..+|.+|++|+.+++.++ ++.....+|... .+|+.+.+..+- .......+....+.
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c-~~L~~i~~p~~l-~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGC-YALKSILLPLML-KSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC-TTCCCCCCCTTC-CEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhccc-ccchhhcccCce-eeecceeeeccccc
Confidence 456789999999754 44333567999999999999765 554555566665 888888776542 22233333222333
Q ss_pred EEECc-CCcccC-CCCCCCCCccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCc
Q 040185 128 TVDLR-SNRYEG-PLPLWSFNVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 205 (458)
Q Consensus 128 ~L~l~-~n~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 205 (458)
..... .....+ .......+|+.+.+.++.. .+....+.++++|+.+.+..+ +......++.++..|+.+.+..+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 33332 222111 1223356899999976543 455666667999999999876 443556778889999988887654
Q ss_pred CCCCCCCcccCCcccCCcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcC
Q 040185 206 YMSNNSLPGEIPDSIGSLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 285 (458)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~ 285 (458)
. ..........+|+.+.+.... +......+..+..++.+.+..+.. .+....+..+..++.+......+
T Consensus 220 ~--------~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 220 Y--------YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp C--------EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE
T ss_pred e--------EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee
Confidence 2 222333445678888876543 323445677888999999887643 34444555588899888876543
Q ss_pred CCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCcc
Q 040185 286 NGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQ 365 (458)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 365 (458)
. ...+..+.+|+.+.+..+ +..+...+|.+ +.+|+.+++..+ +..+....|.+|.+|+++.+..
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~-----------c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VKFIGEEAFES-----------CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CCEECTTTTTT-----------CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred c---cccccccccccccccccc-cceechhhhcC-----------CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 3 346788899999998764 44444444444 457888888643 5556677889999999999987
Q ss_pred CcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCee
Q 040185 366 NHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 409 (458)
Q Consensus 366 n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 409 (458)
+ +.......|..|++|+.+++..+ +. .+...+..+++|+.+
T Consensus 353 ~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 S-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp T-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred c-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6 55455678889999999999765 22 234568888888765
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=2.8e-14 Score=123.83 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=87.2
Q ss_pred hhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCc
Q 040185 267 WIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSR 346 (458)
Q Consensus 267 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 346 (458)
.+.. +++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.+
T Consensus 43 ~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-----------~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 43 TLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-----------AVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-----------HHHHHCSEEEEEEEECCC
T ss_pred HHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-----------hcCCcCCEEECcCCcCCc
Confidence 4444 6667777776666664 44 5666667777777777665 223222 123567777777777755
Q ss_pred cCChhhccccCCCeeeCccCcCCCccc-ccccCCCCCcEEeCCCCcccccCCc----------cccCCCCCCeeecccCc
Q 040185 347 EMPVELTRLIHLGTLNLSQNHLVGKIP-TQIGKLEWLESLDLSKNKLSGSIPP----------SMVSLTFMNHLNLSYNN 415 (458)
Q Consensus 347 ~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~ 415 (458)
. + .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ +++
T Consensus 108 l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 108 L-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp H-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred C-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 3 3 56777888888888888873222 3677888888888888888755443 267788888876 666
Q ss_pred CC
Q 040185 416 LS 417 (458)
Q Consensus 416 l~ 417 (458)
++
T Consensus 184 i~ 185 (198)
T 1ds9_A 184 VD 185 (198)
T ss_dssp GT
T ss_pred cC
Confidence 65
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=5.4e-14 Score=134.05 Aligned_cols=146 Identities=20% Similarity=0.110 Sum_probs=72.0
Q ss_pred CCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccc-----cCCCCCCEEEcCCCcCcccCchhhccCCC
Q 040185 248 SMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPEL-----CKLSALHILDLSHNNLSGFIPSCVGNFSR 322 (458)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 322 (458)
++|++|++++|.+.+.....+...+++|+.|++++|.+.+.....+ ...++|+.|++++|.++......+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~--- 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME--- 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH---
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH---
Confidence 4555566665555433333333334455666666665543222222 23455666666666554322111110
Q ss_pred CceeecccccccCEEEcccCcCCccC----ChhhccccCCCeeeCccCcCCCcc----cccccCCCCCcEEeCCCCcccc
Q 040185 323 TEYVFYSTLYLVNLMDLSSNNLSREM----PVELTRLIHLGTLNLSQNHLVGKI----PTQIGKLEWLESLDLSKNKLSG 394 (458)
Q Consensus 323 ~~~~~~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~L~~n~~~~ 394 (458)
.+...++|++|++++|.+++.. +..+..+++|++|++++|.+++.. ...+..+++|++|+|++|.+++
T Consensus 178 ----~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 178 ----GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ----HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ----HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 0112345666666666654332 334455566777777777665422 2233345667777777777665
Q ss_pred cCCccc
Q 040185 395 SIPPSM 400 (458)
Q Consensus 395 ~~~~~l 400 (458)
.....+
T Consensus 254 ~g~~~L 259 (372)
T 3un9_A 254 EGRQVL 259 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=2.4e-14 Score=124.27 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=92.1
Q ss_pred ccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCC
Q 040185 242 PSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFS 321 (458)
Q Consensus 242 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 321 (458)
..+..+++|++|++++|.+. .+| .+.. +++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+. | .
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~----- 110 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-G----- 110 (198)
T ss_dssp HHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-H-----
T ss_pred HHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-c-----
Confidence 36667777777777777776 466 4443 777777777777776 4555566667777888877777642 2 1
Q ss_pred CCceeecccccccCEEEcccCcCCccCC-hhhccccCCCeeeCccCcCCCcccc----------cccCCCCCcEEeCCCC
Q 040185 322 RTEYVFYSTLYLVNLMDLSSNNLSREMP-VELTRLIHLGTLNLSQNHLVGKIPT----------QIGKLEWLESLDLSKN 390 (458)
Q Consensus 322 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~----------~l~~~~~L~~L~L~~n 390 (458)
+..+++|+.|++++|.+.+... ..+..+++|++|++++|++.+..|. .+..+++|+.|+ ++
T Consensus 111 ------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~ 182 (198)
T 1ds9_A 111 ------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GM 182 (198)
T ss_dssp ------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CG
T ss_pred ------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cc
Confidence 2345578888888888765332 4677788899999998887654443 267788999887 66
Q ss_pred cccc
Q 040185 391 KLSG 394 (458)
Q Consensus 391 ~~~~ 394 (458)
.++.
T Consensus 183 ~i~~ 186 (198)
T 1ds9_A 183 PVDV 186 (198)
T ss_dssp GGTT
T ss_pred ccCH
Confidence 6653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=3.2e-12 Score=108.19 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=88.8
Q ss_pred CCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccC
Q 040185 299 LHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGK 378 (458)
Q Consensus 299 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 378 (458)
-+.++++++++. .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..+..
T Consensus 14 ~~~l~~~~n~l~-~iP~~~-------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI-------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcEEEeCCCCCC-ccCCCc-------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 478999999886 444322 247999999999998888888999999999999999998544455688
Q ss_pred CCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCC
Q 040185 379 LEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIP 421 (458)
Q Consensus 379 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 421 (458)
+++|++|+|++|.+.+..+..+..+++|++|++++|++....+
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9999999999999985555568889999999999999875443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=1.8e-11 Score=103.15 Aligned_cols=84 Identities=25% Similarity=0.297 Sum_probs=38.2
Q ss_pred cCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeeccc
Q 040185 334 VNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSY 413 (458)
Q Consensus 334 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 413 (458)
|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|+|++|++.+..+..+..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 44444444444443344444444455555555544433333334444555555555554433333344445555555555
Q ss_pred CcCC
Q 040185 414 NNLS 417 (458)
Q Consensus 414 n~l~ 417 (458)
|++.
T Consensus 112 N~~~ 115 (170)
T 3g39_A 112 NPWD 115 (170)
T ss_dssp SCBC
T ss_pred CCCC
Confidence 5444
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=3.6e-11 Score=101.29 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=69.0
Q ss_pred ccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCC
Q 040185 147 VTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSV 226 (458)
Q Consensus 147 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L 226 (458)
.++++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|. +.+..+..|..+++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ------LTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC------cCccChhhccCCCCC
Confidence 456666666665 555544 3567777777777765556666677777777777776 444444556667777
Q ss_pred cEEEeecccCCCCccccccCCCCCCEEecCCCcCC
Q 040185 227 RFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 227 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (458)
++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77777777776555555667777777777777665
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=8.7e-11 Score=99.25 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=64.2
Q ss_pred cEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCCCc
Q 040185 148 TKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLSVR 227 (458)
Q Consensus 148 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 227 (458)
+.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|. +.+..+..|..+++|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK------LTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCC
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC------CCccChhHhCCcchhh
Confidence 45666666664 555544 2566677777776665555666666667777776666 3433334456666666
Q ss_pred EEEeecccCCCCccccccCCCCCCEEecCCCcCC
Q 040185 228 FLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLS 261 (458)
Q Consensus 228 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (458)
+|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6777666666444444666666666666666665
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=1.5e-13 Score=130.96 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=18.3
Q ss_pred CCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccc
Q 040185 76 TELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELS 114 (458)
Q Consensus 76 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~ 114 (458)
++|++|+|++|.+++.....+...+++|++|+|++|.++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 455555555555544333333333344555555555443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=3e-11 Score=114.40 Aligned_cols=84 Identities=23% Similarity=0.171 Sum_probs=52.2
Q ss_pred ccCEEEccc-CcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeec
Q 040185 333 LVNLMDLSS-NNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNL 411 (458)
Q Consensus 333 ~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 411 (458)
+|+.|+|++ |.+.+..+..|..+++|++|+|++|.+.+..|..|..+++|+.|+|++|++.+..+..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 566666664 666665556666666666666666666655555666666666666666666633333344443 666666
Q ss_pred ccCcCC
Q 040185 412 SYNNLS 417 (458)
Q Consensus 412 ~~n~l~ 417 (458)
.+|++.
T Consensus 111 ~~N~~~ 116 (347)
T 2ifg_A 111 SGNPLH 116 (347)
T ss_dssp CSSCCC
T ss_pred eCCCcc
Confidence 666654
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=5.3e-08 Score=93.63 Aligned_cols=130 Identities=8% Similarity=0.118 Sum_probs=60.1
Q ss_pred hhhhCCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCc
Q 040185 267 WIGESMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSR 346 (458)
Q Consensus 267 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 346 (458)
..+..+..|+.+.+...... .....+..+.+|+.+.+.. .+......+|.+ +.+|+.+++..+ +..
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~-----------c~~L~~i~lp~~-v~~ 324 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAG-----------CISLKSIDIPEG-ITQ 324 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTT-----------CTTCCEEECCTT-CCE
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecC-----------CCCcCEEEeCCc-ccE
Confidence 33344566666666544322 3334556666666666642 233222222222 334555555432 333
Q ss_pred cCChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccC
Q 040185 347 EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 414 (458)
Q Consensus 347 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 414 (458)
+....|.+|.+|+++.+..+ ++......|..|++|+.+++.++.... ..+..+..|+.+.+..+
T Consensus 325 I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred ehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 34445666666666666443 332334456666666666666654321 23445556666655544
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.97 E-value=9.1e-08 Score=91.98 Aligned_cols=129 Identities=9% Similarity=0.103 Sum_probs=88.2
Q ss_pred cCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCc
Q 040185 288 AIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH 367 (458)
Q Consensus 288 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 367 (458)
.....|..+..|+.+.+..+.. ......|. .+..|+.+.+. +.+..+....|.+|.+|+++.+..+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~-----------~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFM-----------NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTT-----------TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred cccceeeecccccEEecccccc-eecCcccc-----------cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence 3345678889999998876532 23333333 45578888875 3455556678889999999999865
Q ss_pred CCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccCcCCccCCCCCCCCCCCCCc
Q 040185 368 LVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPS 433 (458)
Q Consensus 368 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~ 433 (458)
++......|..|.+|+.+.|..+ ++.....+|.+|++|+.+++.++... +..+.....|+.+.
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLP 384 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEE
Confidence 55344567889999999999765 55455678999999999999988653 22334455566555
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=4.9e-09 Score=99.05 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=87.3
Q ss_pred cEEeccCC-cCcCcCchhhhcCCCCCcEEEccC-CCCccCCcccccCCCCCcEEEcccCcCCCCCCCcccCCcccCCcCC
Q 040185 148 TKLYLNNN-LFSGPIPRDFGQKIPFLTDLDISF-NSLNGSVPKSIGNLQQLLTLVISNNNYMSNNSLPGEIPDSIGSLLS 225 (458)
Q Consensus 148 ~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 225 (458)
..++.+++ .++ .+|. +. .+++|++|++++ |.+.+..+..|..+++|++|+|++|. +.+..+..|..+++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~------l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG------LRFVAPDAFHFTPR 81 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC------CCEECTTGGGSCSC
T ss_pred CEEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc------cceeCHHHhcCCcC
Confidence 45688887 787 6887 54 688999999996 99987666789999999999999998 67777888899999
Q ss_pred CcEEEeecccCCCCccccccCCCCCCEEecCCCcCCC
Q 040185 226 VRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSG 262 (458)
Q Consensus 226 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 262 (458)
|++|++++|.+++..+..+..++ |+.|++.+|.+..
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999999999866666666655 9999999998874
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=6e-10 Score=105.18 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=43.9
Q ss_pred ccccCEEEcccCcCCccCChhhc---cccCCCeeeCccCcCCCcc----cccccCCCCCcEEeCCCCcccccCCccccC-
Q 040185 331 LYLVNLMDLSSNNLSREMPVELT---RLIHLGTLNLSQNHLVGKI----PTQIGKLEWLESLDLSKNKLSGSIPPSMVS- 402 (458)
Q Consensus 331 ~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~- 402 (458)
+++|+.|++.+|.+++..+..+. .+++|++|+|+.|.+.+.. +..+.++++|++|++++|.+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 44555566555555432222222 3566777777776665432 223344567777777777766443333332
Q ss_pred CCCCCeeecccCc
Q 040185 403 LTFMNHLNLSYNN 415 (458)
Q Consensus 403 l~~L~~L~l~~n~ 415 (458)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456666554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=8.7e-09 Score=97.23 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=86.9
Q ss_pred CCCCccEEEcccCcCCCcCCccccCCCCCCEEEcCCCcCcccCchhhccCCCCceeecccccccCEEEccc--CcC-Ccc
Q 040185 271 SMPSLSILRLRSNYFNGAIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSS--NNL-SRE 347 (458)
Q Consensus 271 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~l-~~~ 347 (458)
.+|+|+.|.++++.-. ..+. + .+++|+.|++..+.+.......+. ...+++|+.|+|.. +.. .+.
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~---------~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL---------GSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH---------HSBCTTCCEEEEECBCGGGTCCS
T ss_pred cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH---------HccCCCCcEEEEeccccccccch
Confidence 3778888888776311 2222 3 267788888877766533222221 11356777777742 111 111
Q ss_pred ----CChhh--ccccCCCeeeCccCcCCCccccccc---CCCCCcEEeCCCCccccc----CCccccCCCCCCeeecccC
Q 040185 348 ----MPVEL--TRLIHLGTLNLSQNHLVGKIPTQIG---KLEWLESLDLSKNKLSGS----IPPSMVSLTFMNHLNLSYN 414 (458)
Q Consensus 348 ----~~~~l--~~~~~L~~L~l~~n~~~~~~~~~l~---~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n 414 (458)
+...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11122 2478999999999988754443332 578999999999999864 3444566899999999999
Q ss_pred cCCc
Q 040185 415 NLSG 418 (458)
Q Consensus 415 ~l~~ 418 (458)
.++.
T Consensus 318 ~i~d 321 (362)
T 2ra8_A 318 YLSD 321 (362)
T ss_dssp BCCH
T ss_pred cCCH
Confidence 8863
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=1.1e-06 Score=83.86 Aligned_cols=76 Identities=5% Similarity=-0.067 Sum_probs=37.8
Q ss_pred CcccEEEccCCCCCCCCCccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEEC
Q 040185 52 FKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDL 131 (458)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l 131 (458)
.+|+.+.+... +...-..+|.+|++|+.+.|.++ ++.....+|... +|+.+.+..+ +..-....+...+|+.+.+
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~~-l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT--KLQSYTGMER-VKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC--CCCEEEECTT-CCEECTTTTTTCCCSEEEC
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC--CCceEECCce-eeEeccceeccCCcccccC
Confidence 46777766543 22122455677777777777543 444444445442 5666655433 2212222233335555555
Q ss_pred c
Q 040185 132 R 132 (458)
Q Consensus 132 ~ 132 (458)
.
T Consensus 121 p 121 (379)
T 4h09_A 121 P 121 (379)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.76 E-value=1.9e-06 Score=82.30 Aligned_cols=310 Identities=9% Similarity=0.023 Sum_probs=169.1
Q ss_pred ccccCCCCccEEEccCCCcccCCChhHHhhcccCcEEecCCcccccCCCCCCCCCCCCEEECcCCcccCC--CCCCCCCc
Q 040185 70 TWLRNQTELTTLVLNNARISDTIPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLRSNRYEGP--LPLWSFNV 147 (458)
Q Consensus 70 ~~l~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l~~L 147 (458)
.|+....+|+.+.+.. .++.+...+|..+ .+|+.+.+..+ ++.-....+.-.+|+.+.+..+ +... ..-...+|
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C-~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~~L 115 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSC-YNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGTDL 115 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTCCC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCC-CCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceeccCCc
Confidence 4566667777777753 4554555566665 77787777654 3323333443335666665432 2211 11112367
Q ss_pred cEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCCccCCcccccCCCCCcEEEcccCcCCC--CCC----CcccCCcccC
Q 040185 148 TKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNYMS--NNS----LPGEIPDSIG 221 (458)
Q Consensus 148 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~----~~~~~~~~~~ 221 (458)
+.+.+..+-. .+....+. ..+++.+.+..+ ++.....++..+..++.+.+....... .+. ........+.
T Consensus 116 ~~i~lp~~~~--~i~~~~F~-~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 116 DDFEFPGATT--EIGNYIFY-NSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp SEEECCTTCC--EECTTTTT-TCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred ccccCCCccc--cccccccc-cceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 7777765422 22223332 234555555443 222334455666666666665433100 000 0001111223
Q ss_pred CcCCCcEEEeecccCCCCccccccCCCCCCEEecCCCcCCCCCchhhhhCCCCccEEEcccCcCCCcCCccccCCCCCCE
Q 040185 222 SLLSVRFLIFCNNHISGEVPPSLKNCSMMESLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGAIPPELCKLSALHI 301 (458)
Q Consensus 222 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 301 (458)
....+....+...... .....+....+++.+.+..+ +. .+....+..+..|+.+.+..+ ++......+..+.+|+.
T Consensus 192 ~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccceeE-Eeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 3344444444333221 23344556677777777654 33 444444445778888887665 44344556777788888
Q ss_pred EEcCCCcCcccCchhhccCCCCceeecccccccCEEEcccCcCCccCChhhccccCCCeeeCccCcCCCcccccccCCCC
Q 040185 302 LDLSHNNLSGFIPSCVGNFSRTEYVFYSTLYLVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEW 381 (458)
Q Consensus 302 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 381 (458)
+.+..+ +.......| ..+.+|+.+.+.++.+..+....|.+|.+|+++.+..+ ++......|..|++
T Consensus 268 i~l~~~-i~~i~~~aF-----------~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLC-----------SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp EEECCC-CSEECTTTT-----------TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccccc-ceecccccc-----------ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 877543 332222333 34557888888777776666778888889999988654 44344567788889
Q ss_pred CcEEeCCCCcccccCCccccCCCC
Q 040185 382 LESLDLSKNKLSGSIPPSMVSLTF 405 (458)
Q Consensus 382 L~~L~L~~n~~~~~~~~~l~~l~~ 405 (458)
|+.+.+..+ ++.....+|.+++.
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSSC
T ss_pred CCEEEECCc-cCEEchhHhhCCCC
Confidence 998888765 54445556766643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1.7e-08 Score=85.94 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=20.4
Q ss_pred CCCccEEEcccC-cCCCc----CCccccCCCCCCEEEcCCCcCc
Q 040185 272 MPSLSILRLRSN-YFNGA----IPPELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 272 l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 310 (458)
.++|++|++++| .+... +...+...++|++|++++|.+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 555666666665 55421 2233444555666666665554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=3.8e-08 Score=81.75 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=51.3
Q ss_pred ccCEEEcccCcCCccCChhhccccCCCeeeCccCc-CCCcccccccCC----CCCcEEeCCCC-cccccCCccccCCCCC
Q 040185 333 LVNLMDLSSNNLSREMPVELTRLIHLGTLNLSQNH-LVGKIPTQIGKL----EWLESLDLSKN-KLSGSIPPSMVSLTFM 406 (458)
Q Consensus 333 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~----~~L~~L~L~~n-~~~~~~~~~l~~l~~L 406 (458)
.|+.||++++.+++.....+..+++|++|+|++|. +++.....+..+ ++|++|+|++| .+++.....+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666666555555555666677777777763 555444445443 35777777776 3665545556666777
Q ss_pred CeeecccCcC
Q 040185 407 NHLNLSYNNL 416 (458)
Q Consensus 407 ~~L~l~~n~l 416 (458)
++|++++|+-
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 7777777753
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=7.4e-08 Score=81.97 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=32.5
Q ss_pred cccCCCCCCEEecCCC-cCCCCCchhhh---hCCCCccEEEcccCcCCCc----CCccccCCCCCCEEEcCCCcCc
Q 040185 243 SLKNCSMMESLDLGDN-QLSGNIPAWIG---ESMPSLSILRLRSNYFNGA----IPPELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 243 ~l~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 310 (458)
.+...++|++|++++| .+.+.....+. ...++|++|++++|.+.+. +...+...++|+.|++++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445566666666666 55532222111 1245566666666655432 1222333345555555555544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=6e-08 Score=80.55 Aligned_cols=93 Identities=15% Similarity=0.042 Sum_probs=68.5
Q ss_pred cCCCCCCCCCcccEEEccCCCCCCCCCccccCCCCccEEEccCC-CcccCCChhHHhh---cccCcEEecCCcc-cccCC
Q 040185 43 GLDSHWIPPFKLTFIKIRSCQPGPKFPTWLRNQTELTTLVLNNA-RISDTIPNWFWQL---DLALDELDVGSNE-LSGRI 117 (458)
Q Consensus 43 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~-~i~~~~~~~~~~~---~~~L~~L~L~~~~-l~~~~ 117 (458)
.+|..-.+..+|++|++++|.+.+.-...++++++|++|+|++| .+++.....+... +++|++|++++|. +++..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 34544445568999999999987655566789999999999999 5998887778763 3589999999984 77543
Q ss_pred CCCC-CCCCCCEEECcCCc
Q 040185 118 PNSL-GFRFPGTVDLRSNR 135 (458)
Q Consensus 118 ~~~~-~~~~L~~L~l~~n~ 135 (458)
...+ .+++|++|++++|+
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 3333 46666666666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=4.2e-07 Score=81.34 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=31.3
Q ss_pred ccCCCeeeCccCcCCC--cccccccCCCCCcEEeCCCCcccccCCccccCCC--CCCeeecccCcCCccCC
Q 040185 355 LIHLGTLNLSQNHLVG--KIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLT--FMNHLNLSYNNLSGEIP 421 (458)
Q Consensus 355 ~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~p 421 (458)
+++|++|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4455555555555543 2223334455555555555555532 1222222 55555555555554444
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=5.7e-06 Score=74.00 Aligned_cols=78 Identities=27% Similarity=0.292 Sum_probs=53.3
Q ss_pred ccccCEEEcccCcCCcc--CChhhccccCCCeeeCccCcCCCcccccccCCC--CCcEEeCCCCcccccCC-------cc
Q 040185 331 LYLVNLMDLSSNNLSRE--MPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE--WLESLDLSKNKLSGSIP-------PS 399 (458)
Q Consensus 331 ~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~L~~n~~~~~~~-------~~ 399 (458)
+++|+.|+|++|.+.+. ++..+..+++|+.|+|++|.+.+. ..+..+. +|+.|+|++|.+.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 45677777777776552 345566788888888888888743 2233333 88899999998886554 23
Q ss_pred ccCCCCCCeee
Q 040185 400 MVSLTFMNHLN 410 (458)
Q Consensus 400 l~~l~~L~~L~ 410 (458)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56678888775
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=2.8e-05 Score=61.53 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=19.0
Q ss_pred CCcEEeCCCCcccccCCccccCCCCCCeeecccCcC
Q 040185 381 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 416 (458)
Q Consensus 381 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 416 (458)
+|++|+|++|.++..-+..|..+++|++|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555533333455555555555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.51 E-value=3.1e-05 Score=65.44 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=19.7
Q ss_pred CCCccEEEcccC-cCCCc----CCccccCCCCCCEEEcCCCcCc
Q 040185 272 MPSLSILRLRSN-YFNGA----IPPELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 272 l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 310 (458)
-+.|+.|+++++ .+... +.+.+..-..|+.|+|++|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 455666666653 44321 2233444455666666665554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00011 Score=62.20 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=29.5
Q ss_pred cCCCCCCEEecCCC-cCCCCCchhhh---hCCCCccEEEcccCcCCCc----CCccccCCCCCCEEEcCCCcCc
Q 040185 245 KNCSMMESLDLGDN-QLSGNIPAWIG---ESMPSLSILRLRSNYFNGA----IPPELCKLSALHILDLSHNNLS 310 (458)
Q Consensus 245 ~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 310 (458)
..-+.|++|+++++ .+.+.....+. ..-..|+.|+|++|.+.+. +.+.+..-..|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666553 44422211111 1234566666666655432 1222333344555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.08 E-value=0.015 Score=45.64 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=17.5
Q ss_pred CccEEeccCCcCcCcCchhhhcCCCCCcEEEccCCCC
Q 040185 146 NVTKLYLNNNLFSGPIPRDFGQKIPFLTDLDISFNSL 182 (458)
Q Consensus 146 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 182 (458)
++++|+|++|+++ .++...+..+++|+.|++++|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 4555555555554 44444444455555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.09 E-value=42 Score=24.15 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=20.8
Q ss_pred CChhhccccCCCeeeCccCcCCCcccccccCCCCCcEEeCCC
Q 040185 348 MPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 389 (458)
Q Consensus 348 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~ 389 (458)
....|.+|.+|+++.|-.+ ++......|..|.+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344555566666655544 2223334455555565555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.06 E-value=31 Score=24.88 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=36.5
Q ss_pred cCCCcccccccCCCCCcEEeCCCCcccccCCccccCCCCCCeeecccC
Q 040185 367 HLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 414 (458)
Q Consensus 367 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 414 (458)
.++......|..|.+|+.+.|-.+ ++.+....|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445445567888999999999886 34356678999999999999764
Done!