BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040186
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 193/434 (44%), Gaps = 70/434 (16%)
Query: 3 LEITLKETITVRPSELQAANIQTIELSGLDRISPAM-LYTIFFFKSQLKNDGENPIELER 61
++I +KE+ VRP+ Q + + S +D + P +++F++ N + +
Sbjct: 6 MKIEVKESTMVRPA--QETPGRNLWNSNVDLVVPNFHTPSVYFYR---PTGSSNFFDAKV 60
Query: 62 AKRALQRVLVSWYPAAGRFKFNETTGKLEIDCNNKGVTMITAVTESKLEEFGCLHEYKPC 121
K AL R LV +YP AGR K +E G++EI+CN +GV + A ++ +++FG ++ P
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDED-GRIEIECNGEGVLFVEAESDGVVDDFG---DFAPT 116
Query: 122 YE--KLVPKLSQSSDVSENPLVLVQITSFACGGISIGLGGSHALFDGVGAFKFLASWAHV 179
E +L+P + S +S L+++Q+T F CGG+S+G+G H DG F+ SW+ +
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDM 176
Query: 180 SSGKDESDLTFPNHSRDALLHAISSPN-------YACPDTSAASIYEQDHVAAIQDLYRI 232
+ G D+T P LL A P Y P A S
Sbjct: 177 ARGL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVS---------------- 217
Query: 233 PMQAMASDDRCWKTALSKFGQIDPQGEXXXXXXXXXXXXXDAWKGMAIESGNLTRCSTFD 292
A+ D +TA+S F Q A K + E GN S+++
Sbjct: 218 --PQTAASDSVPETAVSIFKLTREQ--------------ISALKAKSKEDGNTISYSSYE 261
Query: 293 VLCAHVWKARVMALKLHPRTNICLQFPVDSRSRLRPPLGENFTGNAFVLASVSCSVKDLL 352
+L HVW+ A L L D R+RLRP L + GN A+ DL
Sbjct: 262 MLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLE 321
Query: 353 KEPLHQTIQRIQEAKDVITDEYIKLYAKALEYSSDKFFPSMRELTI-----------ITD 401
+P+ +I +A + ++Y++ AL+Y + P ++ L IT
Sbjct: 322 FKPVWYAASKIHDALARMDNDYLR---SALDYL--ELQPDLKALVRGAHTFKXPNLGITS 376
Query: 402 WLRFPFHALDFGWG 415
W+R P H DFGWG
Sbjct: 377 WVRLPIHDADFGWG 390
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 193/433 (44%), Gaps = 68/433 (15%)
Query: 3 LEITLKETITVRPSELQAANIQTIELSGLDRISPAM-LYTIFFFKSQLKNDGENPIELER 61
++I +KE+ VRP+ Q + + S +D + P +++F++ N + +
Sbjct: 3 MKIEVKESTMVRPA--QETPGRNLWNSNVDLVVPNFHTPSVYFYR---PTGSSNFFDAKV 57
Query: 62 AKRALQRVLVSWYPAAGRFKFNETTGKLEIDCNNKGVTMITAVTESKLEEFGCLHEYKPC 121
K AL R LV +YP AGR K +E G++EI+CN +GV + A ++ +++FG ++ P
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDED-GRIEIECNGEGVLFVEAESDGVVDDFG---DFAPT 113
Query: 122 YE--KLVPKLSQSSDVSENPLVLVQITSFACGGISIGLGGSHALFDGVGAFKFLASWAHV 179
E +L+P + S +S L+++Q+T F CGG+S+G+G H DG F+ SW+ +
Sbjct: 114 LELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDM 173
Query: 180 SSGKDESDLTFPNHSRDALLHAISSPNYACPDTSAASIYEQDHVAAIQDLYRIPMQAM-- 237
+ G D+T P LL A P Q + P A+
Sbjct: 174 ARGL---DVTLPPFIDRTLLRARDPPQ-----------------PQFQHIEYQPPPALKV 213
Query: 238 ----ASDDRCWKTALSKFGQIDPQGEXXXXXXXXXXXXXDAWKGMAIESGNLTRCSTFDV 293
A D +TA+S F Q A K + E GN S++++
Sbjct: 214 SPQTAKSDSVPETAVSIFKLTREQ--------------ISALKAKSKEDGNTISYSSYEM 259
Query: 294 LCAHVWKARVMALKLHPRTNICLQFPVDSRSRLRPPLGENFTGNAFVLASVSCSVKDLLK 353
L HVW+ A L L D R+RLRP L + GN A+ DL
Sbjct: 260 LAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEF 319
Query: 354 EPLHQTIQRIQEAKDVITDEYIKLYAKALEYSSDKFFPSMRELTI-----------ITDW 402
+P+ +I +A + ++Y++ AL+Y + P ++ L IT W
Sbjct: 320 KPVWYAASKIHDALARMDNDYLR---SALDYL--ELQPDLKALVRGAHTFKCPNLGITSW 374
Query: 403 LRFPFHALDFGWG 415
+R P H DFGWG
Sbjct: 375 VRLPIHDADFGWG 387
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/434 (27%), Positives = 192/434 (44%), Gaps = 70/434 (16%)
Query: 3 LEITLKETITVRPSELQAANIQTIELSGLDRISPAM-LYTIFFFKSQLKNDGENPIELER 61
++I +KE+ VRP+ Q + + S +D + P +++F++ N + +
Sbjct: 6 MKIEVKESTMVRPA--QETPGRNLWNSNVDLVVPNFHTPSVYFYR---PTGSSNFFDAKV 60
Query: 62 AKRALQRVLVSWYPAAGRFKFNETTGKLEIDCNNKGVTMITAVTESKLEEFGCLHEYKPC 121
K AL R LV +YP AGR K +E G++EI+CN +GV + A ++ +++FG ++ P
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDED-GRIEIECNGEGVLFVEAESDGVVDDFG---DFAPT 116
Query: 122 YE--KLVPKLSQSSDVSENPLVLVQITSFACGGISIGLGGSHALFDGVGAFKFLASWAHV 179
E +L+P + S +S L+++Q+T F GG+S+G+G H DG F+ SW+ +
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDM 176
Query: 180 SSGKDESDLTFPNHSRDALLHAISSPN-------YACPDTSAASIYEQDHVAAIQDLYRI 232
+ G D+T P LL A P Y P A S
Sbjct: 177 ARGL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVS---------------- 217
Query: 233 PMQAMASDDRCWKTALSKFGQIDPQGEXXXXXXXXXXXXXDAWKGMAIESGNLTRCSTFD 292
A+ D +TA+S F Q A K + E GN S+++
Sbjct: 218 --PQTAASDSVPETAVSIFKLTREQ--------------ISALKAKSKEDGNTISYSSYE 261
Query: 293 VLCAHVWKARVMALKLHPRTNICLQFPVDSRSRLRPPLGENFTGNAFVLASVSCSVKDLL 352
+L HVW+ A L L D R+RLRP L + GN A+ DL
Sbjct: 262 MLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLE 321
Query: 353 KEPLHQTIQRIQEAKDVITDEYIKLYAKALEYSSDKFFPSMRELTI-----------ITD 401
+P+ +I +A + ++Y++ AL+Y + P ++ L IT
Sbjct: 322 FKPVWYAASKIHDALARMDNDYLR---SALDYL--ELQPDLKALVRGAHTFKXPNLGITS 376
Query: 402 WLRFPFHALDFGWG 415
W+R P H DFGWG
Sbjct: 377 WVRLPIHDADFGWG 390
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 109/445 (24%), Positives = 178/445 (40%), Gaps = 83/445 (18%)
Query: 13 VRPSELQAANIQTIELSGLDRIS-PAMLYTIFFFKSQLKNDGENPIELERAKRALQRVLV 71
+ PS +++ ++S LD++ + I F+ + L ++ + + K++L +VL
Sbjct: 13 ILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLT 72
Query: 72 SWYPAAGRFKFNETTGKLEIDCNNKGVTMITAVTESKLE-------EFGCLHEYKPCYEK 124
+YP AGR N + +DCN+ GV + A +++L E L +Y P
Sbjct: 73 HFYPLAGRINVNSS-----VDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAY 127
Query: 125 LVPKLSQSSDVSENPLVLVQITSFACGGISIGLGGSHALFDGVGAFKFLASWAHVSSGKD 184
K+ + DV PL V+I+ F CGG +IG+ SH + D + FL +W G
Sbjct: 128 PGGKIEVNEDV---PLA-VKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRG-- 181
Query: 185 ESDLTFPNHSRDALLHAISSPNYACPDTSAASIYEQDHVAAIQDLYRIPMQAMASDDRCW 244
E+++ PN L A P +T + + ++V M+ D
Sbjct: 182 ETEIVLPNFD----LAARHFP--PVDNTPSPELVPDENVV---------MKRFVFDKE-- 224
Query: 245 KTALSKFGQIDPQGEXXXXXXXXXXXXXDAWKGMAIESGNLTRCSTFDVLCAHVWK--AR 302
K G + Q A E N +R ++ A++WK
Sbjct: 225 -----KIGALRAQASS------------------ASEEKNFSRVQ---LVVAYIWKHVID 258
Query: 303 VMALKLHPRTNICLQFPVDSRSRLRPPLGENFTGNAFVLASVSCSV---KDL--LKEPLH 357
V K + + V+ RSR+ PPL GN L + KD L PL
Sbjct: 259 VTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLR 318
Query: 358 QTIQRIQEAKDVITDEYIKLYAKALEYSSDKFFPSMRELTIITDWLRFPFHALDFGWGPR 417
++++ ++ + E +K E +EL T W R F+ LDFGWG
Sbjct: 319 TSLEKTEDDHN---HELLKGMTCLYELEP-------QELLSFTSWCRLGFYDLDFGWGKP 368
Query: 418 LSGAVLLATPVPE-TAFLMLDLEGG 441
LS T P+ A L++D G
Sbjct: 369 LSACT---TTFPKRNAALLMDTRSG 390
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 153/392 (39%), Gaps = 54/392 (13%)
Query: 42 IFFFKSQLKNDGENPIELERAKRALQRVLVSWYPAAGRFK-FNETTGKLEIDCNNKGVTM 100
+FF++ + + K +L L +YP G+ + T K EI C +G ++
Sbjct: 45 LFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEI-CYVEGDSV 103
Query: 101 ITAVTESKLE--EFGCLHEYKPC--YEKLVPKLSQS---SDVSENPLVLVQITSFACGGI 153
E L+ E H + C + LVP L +S SD + PL VQ+T F GI
Sbjct: 104 AVTFAECNLDLNELTGNHP-RNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGI 162
Query: 154 SIGLGGSHALFDGVGAFKFLASWAHVSSGKDESDLTFPNHSRDALLHAISSP--NYACPD 211
+IG+ H L D F FL +W ++ + + N +R I P + A
Sbjct: 163 AIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLK 222
Query: 212 TSAASIYEQDHVAAIQDLYRIPMQAMASDDRCWKTALSKFGQIDPQGEXXXXXXXXXXXX 271
+ + +D+V Q++A P +
Sbjct: 223 RAKVESFNEDYVT----------QSLAG----------------PSDKLRATFILTRAVI 256
Query: 272 XDAWKGMAIESGNLTRCSTFDVLCAHVW----KARVMALKLHPRTNICLQFPVDSRSRLR 327
+ + L S+F V CA++W K+R L+L FP+D R+R++
Sbjct: 257 NQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQL-------FGFPIDRRARMK 309
Query: 328 PPLGENFTGNAFVLASVSCSVKDLL--KEPLHQTIQRIQE-AKDVITDEYIKLYAKALEY 384
PP+ + GN V + + +LL KE + I E +TD + +E
Sbjct: 310 PPIPTAYFGNC-VGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDMES 368
Query: 385 SSDKFFPSM-RELTIITDWLRFPFHALDFGWG 415
+D M +T ++ + F+ +DFGWG
Sbjct: 369 FNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWG 400
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/400 (22%), Positives = 152/400 (38%), Gaps = 70/400 (17%)
Query: 42 IFFFKSQLKNDGENPIELERAKRALQRVLVSWYPAAGRFK-FNETTGKLEIDCNNKGVTM 100
+FF++ + + K +L L +YP G+ + T K EI C +G ++
Sbjct: 45 LFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEI-CYVEGDSV 103
Query: 101 ITAVTESKLE--EFGCLHEYKPC--YEKLVPKLSQS---SDVSENPLVLVQITSFACGGI 153
E L+ E H + C + LVP L +S SD + PL VQ+T F GI
Sbjct: 104 AVTFAECNLDLNELTGNHP-RNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGI 162
Query: 154 SIGLGGSHALFDGVGAFKFLASWAHVSSGKDESDLTFPNHSRDALLHAISSP--NYACPD 211
+IG+ H L D F FL +W ++ + + N +R I P + A
Sbjct: 163 AIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLK 222
Query: 212 TSAASIYEQDHVAAIQDLYRIPMQAMASDDRCWKTALSKFGQIDPQGEXXXXXXXXXXXX 271
+ + +D+V Q++A P +
Sbjct: 223 RAKVESFNEDYVT----------QSLAG----------------PSDKLRATFILTRAVI 256
Query: 272 XDAWKGMAIESGNLTRCSTFDVLCAHVW----KARVMALKLHPRTNICLQFPVDSRSRLR 327
+ + L S+F V CA++W K+R L+L FP+D R+R +
Sbjct: 257 NQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQL-------FGFPIDRRARXK 309
Query: 328 PPLGENFTGNAF----VLASVS--------CSVKDLLKEPLHQTIQRIQEAKDVITDEYI 375
PP+ + GN +A + + L+ E LH+T+ ++ V+ D+
Sbjct: 310 PPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDG--VLKDD-- 365
Query: 376 KLYAKALEYSSDKFFPSMRELTIITDWLRFPFHALDFGWG 415
++ + P+ T LR F+ DFGWG
Sbjct: 366 ---XESFNDLVSEGXPTTXTWVSGTPKLR--FYDXDFGWG 400
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 124/329 (37%), Gaps = 62/329 (18%)
Query: 111 EFGCLHEYKPCYEK----LVPKLSQSSD---VSENPLVLVQITSFACGGISIGLGGSHAL 163
+F L Y P K VP+L++ D V P++ +Q+T F GISIG H
Sbjct: 108 DFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVA 167
Query: 164 FDGVGAFKFLASWAHVSS-GKDESDLT---FPNHSRDALLHAISSPNYACPDTSAASIYE 219
DG KF+ +WA ++ G DE L P + R + P+ SI+
Sbjct: 168 GDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKD---------PNGVGXSIWN 218
Query: 220 Q----DHVAAIQDLYRIPMQAMASDDRCWKTALSKFGQIDPQGEXXXXXXXXXXXXXDAW 275
+ H D+ P + + + G++
Sbjct: 219 EXKKYKHXXKXSDVVTPPDKVRGT----FIITRHDIGKL--------------------- 253
Query: 276 KGMAI-ESGNLTRCSTFDVLCAHVWKARV-----MALKLHPRTNICLQFPVDSRSRLRPP 329
K + + LT ++F V CA+VW + ++ D R++ PP
Sbjct: 254 KNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPP 313
Query: 330 LGENFTGNAFVLASVSCSVKDLL-KEPLHQTIQRIQEA--KDVITDEYIKLYAKALEYSS 386
L ++ GNA V DL KE ++ I EA K +E+I + EY
Sbjct: 314 LPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEY-- 371
Query: 387 DKFFPSMRELTIITDWLRFPFHALDFGWG 415
DK + R L++ + +A DFGWG
Sbjct: 372 DK-VDAKRSLSVAGS-PKLDLYAADFGWG 398
>pdb|1SO9|A Chain A, Solution Structure Of Apocox11, 30 Structures
pdb|1SP0|A Chain A, Solution Structure Of Apocox11
Length = 164
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 359 TIQRIQEAKDVITDEYIKL-----YAKALEYSSDKFFPSMRELTI-ITDWLRFPFHALDF 412
T QR+++A D+I DE IK+ A L + +F P R++ + I + ++ + A +
Sbjct: 17 TTQRVEQASDLILDEKIKVTFDANVAAGLPW---EFVPVQRDIDVRIGETVQIMYRAKNL 73
Query: 413 GWGPRLSGAVLLATPVPETAFL 434
P A TP+ A+
Sbjct: 74 ASTPTTGQATFNVTPMAAGAYF 95
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 188 LTFPNHSRDALLHAISSPNYACPDTSAASIYEQDHVAAIQDLYRIPMQAMASDDRCWKTA 247
+ F HS+ L + NY S SI +H + I DLYR M+ + + +
Sbjct: 93 VNFIGHSQGPLACRYVAANYPDSVASVTSINGVNHGSEIADLYRRIMRKDSIPEYIVEKV 152
Query: 248 LSKFGQI 254
L+ FG I
Sbjct: 153 LNAFGTI 159
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 58 ELERAKRALQRVLVSWYPAAGRFKFNETTGKLEIDCNNKGVTMITAVTESKLEEFGCLHE 117
+L KRAL+R L + A R + T LEID +GV T++T ++ EE C
Sbjct: 272 DLSGNKRALRR-LRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEEL-CSDL 329
Query: 118 YKPCYE 123
++ E
Sbjct: 330 FRSTLE 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,439,514
Number of Sequences: 62578
Number of extensions: 541799
Number of successful extensions: 1326
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 19
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)