Query 040188
Match_columns 117
No_of_seqs 113 out of 1102
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 9.6E-23 2.1E-27 129.1 7.4 61 23-84 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.9 6.4E-22 1.4E-26 126.8 7.8 63 24-87 1-63 (64)
3 PHA00280 putative NHN endonucl 99.7 3.5E-17 7.5E-22 117.7 6.6 70 5-78 49-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.4 1.5E-12 3.3E-17 80.4 5.5 53 23-75 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 86.4 2.5 5.4E-05 24.8 4.7 39 35-73 1-42 (46)
6 PHA02601 int integrase; Provis 81.5 3 6.6E-05 32.7 4.6 45 27-72 2-46 (333)
7 PF08846 DUF1816: Domain of un 69.1 11 0.00024 24.6 4.0 40 35-75 9-48 (68)
8 cd00801 INT_P4 Bacteriophage P 68.3 12 0.00026 28.9 4.9 39 33-72 9-49 (357)
9 PF08471 Ribonuc_red_2_N: Clas 68.1 6.3 0.00014 27.4 2.8 21 52-72 70-90 (93)
10 PF05036 SPOR: Sporulation rel 65.5 4 8.8E-05 24.9 1.4 22 48-69 44-65 (76)
11 PF13356 DUF4102: Domain of un 61.0 22 0.00048 23.2 4.4 43 29-72 28-74 (89)
12 PF14112 DUF4284: Domain of un 56.1 6.4 0.00014 27.9 1.2 18 48-65 2-19 (122)
13 PRK09692 integrase; Provisiona 54.9 41 0.0009 27.5 5.9 44 29-72 34-82 (413)
14 PF09954 DUF2188: Uncharacteri 39.2 90 0.002 19.0 4.7 39 28-71 3-41 (62)
15 COG0197 RplP Ribosomal protein 36.5 57 0.0012 24.3 3.7 37 35-75 95-131 (146)
16 COG2185 Sbm Methylmalonyl-CoA 33.0 33 0.00071 25.4 1.9 18 48-65 42-59 (143)
17 PF10729 CedA: Cell division a 28.3 1.3E+02 0.0027 20.1 3.9 39 21-63 29-67 (80)
18 PF13773 DUF4170: Domain of un 28.0 59 0.0013 21.4 2.2 23 50-72 27-49 (69)
19 PF14032 PknH_C: PknH-like ext 25.0 1.4E+02 0.0031 21.4 4.2 24 51-74 86-109 (189)
20 PLN00062 TATA-box-binding prot 22.4 3.5E+02 0.0076 20.4 6.0 47 23-73 34-81 (179)
21 PF14882 GHL12: Hypothetical g 22.1 70 0.0015 19.6 1.7 12 54-65 39-50 (53)
22 PF07494 Reg_prop: Two compone 20.8 31 0.00068 17.4 -0.1 9 48-56 16-24 (24)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.88 E-value=9.6e-23 Score=129.10 Aligned_cols=61 Identities=61% Similarity=0.912 Sum_probs=56.8
Q ss_pred CceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 040188 23 NHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNF 84 (117)
Q Consensus 23 S~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~~NFp~~ 84 (117)
|+|+||+++++|+|+|+|+++. .|+++|||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999988999999999764 269999999999999999999999999999999999975
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.87 E-value=6.4e-22 Score=126.79 Aligned_cols=63 Identities=67% Similarity=0.935 Sum_probs=57.9
Q ss_pred ceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCCCCC
Q 040188 24 HSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRALLNFPNFGAP 87 (117)
Q Consensus 24 ~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~~NFp~~~~~ 87 (117)
+|+||+++++|+|+|+|+++. +|+.+|||+|+|+|||+.|||.++++++|.++.+|||.+.+.
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 589999888999999999864 469999999999999999999999999999999999987653
No 3
>PHA00280 putative NHN endonuclease
Probab=99.70 E-value=3.5e-17 Score=117.73 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=63.0
Q ss_pred CCCchhhhhhccCCCCCCCceeeeEECC-CCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCCCCc
Q 040188 5 ANFPVADAAALAVVPSKGNHSRGVRQTP-SGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGRRAL 78 (117)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~S~yrGV~~~~-~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~~A~ 78 (117)
..+..+|+.|.+..+.++|+|+||+|.+ .|||+|+|++ +||+++||.|+++|+|+.||+ ++.+|||+||.
T Consensus 49 ~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 49 LALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred hcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 3467899999999999999999999886 7999999994 589999999999999999997 67889999875
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.36 E-value=1.5e-12 Score=80.37 Aligned_cols=53 Identities=26% Similarity=0.378 Sum_probs=46.0
Q ss_pred CceeeeEECC-CCcEEEEEeCCCCCC--ceeccCCCCCHHHHHHHHHHHHHHhcCC
Q 040188 23 NHSRGVRQTP-SGKFAAEIRDPAKKG--ARCWLETFATAEQAALANVRAAFKFRGR 75 (117)
Q Consensus 23 S~yrGV~~~~-~GkW~A~I~~~~~~g--k~~~LGtF~t~EeAA~AYD~aa~~~~G~ 75 (117)
|+|+||++++ .++|+|+|++...+| ++++||.|+++|||+++++.+++.++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 6899999886 799999999843333 8999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=86.41 E-value=2.5 Score=24.83 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=28.9
Q ss_pred cEEEEEe-CCCCCC--ceeccCCCCCHHHHHHHHHHHHHHhc
Q 040188 35 KFAAEIR-DPAKKG--ARCWLETFATAEQAALANVRAAFKFR 73 (117)
Q Consensus 35 kW~A~I~-~~~~~g--k~~~LGtF~t~EeAA~AYD~aa~~~~ 73 (117)
+|...|. .....| ++++-+-|.|..||..+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5788883 333344 56778889999999999988777663
No 6
>PHA02601 int integrase; Provisional
Probab=81.47 E-value=3 Score=32.73 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=30.4
Q ss_pred eeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHh
Q 040188 27 GVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKF 72 (117)
Q Consensus 27 GV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~ 72 (117)
+|++.++|+|+++|......|+++. .+|.|..||....+.....+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 4666668999999985433466665 36999999876655544433
No 7
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=69.13 E-value=11 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.2
Q ss_pred cEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCC
Q 040188 35 KFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGR 75 (117)
Q Consensus 35 kW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~ 75 (117)
-|-++|.-..=+ -..|.|=|+|.+||..+..-....|..+
T Consensus 9 aWWveI~T~~P~-ctYyFGPF~s~~eA~~~~~gyieDL~~E 48 (68)
T PF08846_consen 9 AWWVEIETQNPN-CTYYFGPFDSREEAEAALPGYIEDLESE 48 (68)
T ss_pred cEEEEEEcCCCC-EEEEeCCcCCHHHHHHHhccHHHHHHhh
Confidence 366888744322 5678999999999999977776666543
No 8
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=68.34 E-value=12 Score=28.91 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=28.1
Q ss_pred CCcEEEEEeCCCCCCceeccCCCC--CHHHHHHHHHHHHHHh
Q 040188 33 SGKFAAEIRDPAKKGARCWLETFA--TAEQAALANVRAAFKF 72 (117)
Q Consensus 33 ~GkW~A~I~~~~~~gk~~~LGtF~--t~EeAA~AYD~aa~~~ 72 (117)
.+.|..++...++. +++.||+|+ +.++|....+.....+
T Consensus 9 ~~~~~~~~~~~g~~-~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 9 SKSWRFRYRLAGKR-KRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred CEEEEEEeccCCce-eEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 35699998876433 678899995 7778887776655555
No 9
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=68.08 E-value=6.3 Score=27.38 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 040188 52 LETFATAEQAALANVRAAFKF 72 (117)
Q Consensus 52 LGtF~t~EeAA~AYD~aa~~~ 72 (117)
-|+|+|+|+|..-||..+..|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 399999999999999877655
No 10
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=65.48 E-value=4 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=18.8
Q ss_pred ceeccCCCCCHHHHHHHHHHHH
Q 040188 48 ARCWLETFATAEQAALANVRAA 69 (117)
Q Consensus 48 k~~~LGtF~t~EeAA~AYD~aa 69 (117)
-+|.+|.|+|.+||..+.+...
T Consensus 44 yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 44 YRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 5788999999999998887665
No 11
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=60.98 E-value=22 Score=23.20 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=27.3
Q ss_pred EECCCC--cEEEEEeCCCCCCceeccCCCCC--HHHHHHHHHHHHHHh
Q 040188 29 RQTPSG--KFAAEIRDPAKKGARCWLETFAT--AEQAALANVRAAFKF 72 (117)
Q Consensus 29 ~~~~~G--kW~A~I~~~~~~gk~~~LGtF~t--~EeAA~AYD~aa~~~ 72 (117)
+..+.| .|..+.+...+ -+++.||.|+. .+||..........+
T Consensus 28 ~v~~~G~kt~~~r~~~~gk-~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 28 RVTPSGSKTFYFRYRINGK-RRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EE-TTS-EEEEEEEEETTE-EEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEEEEecce-EEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 344543 49888876533 36788999976 666666665555444
No 12
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=56.14 E-value=6.4 Score=27.93 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=13.7
Q ss_pred ceeccCCCCCHHHHHHHH
Q 040188 48 ARCWLETFATAEQAALAN 65 (117)
Q Consensus 48 k~~~LGtF~t~EeAA~AY 65 (117)
..||||+|.|.+|=-.=.
T Consensus 2 VsiWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYF 19 (122)
T ss_pred eEEEEecCCCHHHHHHHh
Confidence 469999999987755443
No 13
>PRK09692 integrase; Provisional
Probab=54.91 E-value=41 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=27.3
Q ss_pred EECCCC--cEEEEEeCC-CCCCceeccCCCC--CHHHHHHHHHHHHHHh
Q 040188 29 RQTPSG--KFAAEIRDP-AKKGARCWLETFA--TAEQAALANVRAAFKF 72 (117)
Q Consensus 29 ~~~~~G--kW~A~I~~~-~~~gk~~~LGtF~--t~EeAA~AYD~aa~~~ 72 (117)
+..+.| .|..+.+.+ ..+.+++.||.|+ |..||......+...+
T Consensus 34 ~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~~~~~ 82 (413)
T PRK09692 34 LIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAESRSLL 82 (413)
T ss_pred EEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 444555 399888643 2222447899999 7877766665544444
No 14
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=39.15 E-value=90 Score=19.01 Aligned_cols=39 Identities=26% Similarity=0.187 Sum_probs=25.7
Q ss_pred eEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHH
Q 040188 28 VRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFK 71 (117)
Q Consensus 28 V~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~ 71 (117)
|..+..+.|...... ..--+.+|+|-+||..+=...+..
T Consensus 3 V~p~~~~~W~v~~eg-----~~ra~~~~~Tk~eAi~~Ar~~a~~ 41 (62)
T PF09954_consen 3 VVPREDGGWAVKKEG-----AKRASKTFDTKAEAIEAARELAKN 41 (62)
T ss_pred EEecCCCCceEEeCC-----CcccccccCcHHHHHHHHHHHHHh
Confidence 344446889888763 233378999999998765554444
No 15
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=36.46 E-value=57 Score=24.32 Aligned_cols=37 Identities=27% Similarity=0.167 Sum_probs=30.3
Q ss_pred cEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhcCC
Q 040188 35 KFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFRGR 75 (117)
Q Consensus 35 kW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~G~ 75 (117)
-|.|+|.. |+.++-=..+++|.|.+|...|+.+|-..
T Consensus 95 gwaArVkp----G~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 95 GWAARVKP----GRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEEecC----CcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 49999984 57777777788999999999999888554
No 16
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.00 E-value=33 Score=25.44 Aligned_cols=18 Identities=33% Similarity=0.233 Sum_probs=15.2
Q ss_pred ceeccCCCCCHHHHHHHH
Q 040188 48 ARCWLETFATAEQAALAN 65 (117)
Q Consensus 48 k~~~LGtF~t~EeAA~AY 65 (117)
.=+++|.|.|+||++++-
T Consensus 42 eVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 42 EVINLGLFQTPEEAVRAA 59 (143)
T ss_pred eEEecCCcCCHHHHHHHH
Confidence 457899999999998874
No 17
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=28.34 E-value=1.3e+02 Score=20.13 Aligned_cols=39 Identities=26% Similarity=0.153 Sum_probs=23.9
Q ss_pred CCCceeeeEECCCCcEEEEEeCCCCCCceeccCCCCCHHHHHH
Q 040188 21 KGNHSRGVRQTPSGKFAAEIRDPAKKGARCWLETFATAEQAAL 63 (117)
Q Consensus 21 ~~S~yrGV~~~~~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~ 63 (117)
+--+|+-|+.. .|||+|.|.... .-.---.|..+|.|-+
T Consensus 29 k~dgfrdvw~l-rgkyvafvl~ge---~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 29 KMDGFRDVWQL-RGKYVAFVLMGE---HFRRSPAFSVPESAQR 67 (80)
T ss_dssp -TTTECCECCC-CCEEEEEEESSS----EEE---BSSHHHHHH
T ss_pred hcccccceeee-ccceEEEEEecc---hhccCCCcCCcHHHHH
Confidence 44578888654 499999998532 2233467888877654
No 18
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=27.98 E-value=59 Score=21.41 Aligned_cols=23 Identities=17% Similarity=-0.058 Sum_probs=19.3
Q ss_pred eccCCCCCHHHHHHHHHHHHHHh
Q 040188 50 CWLETFATAEQAALANVRAAFKF 72 (117)
Q Consensus 50 ~~LGtF~t~EeAA~AYD~aa~~~ 72 (117)
--+|.|++-++|..|+...+.+.
T Consensus 27 diVG~fp~y~~A~~aWrakAq~T 49 (69)
T PF13773_consen 27 DIVGIFPDYASAYAAWRAKAQRT 49 (69)
T ss_pred eEEecCCChHHHHHHHHHHHhCc
Confidence 34699999999999998877654
No 19
>PF14032 PknH_C: PknH-like extracellular domain
Probab=24.99 E-value=1.4e+02 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcC
Q 040188 51 WLETFATAEQAALANVRAAFKFRG 74 (117)
Q Consensus 51 ~LGtF~t~EeAA~AYD~aa~~~~G 74 (117)
-++.|.++++|..+|+..+..++.
T Consensus 86 aV~~fp~~~~A~~~f~~~~~~w~~ 109 (189)
T PF14032_consen 86 AVVVFPSAAAAQAFFARLADQWRA 109 (189)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHh
Confidence 368999999999999998877753
No 20
>PLN00062 TATA-box-binding protein; Provisional
Probab=22.38 E-value=3.5e+02 Score=20.44 Aligned_cols=47 Identities=17% Similarity=0.020 Sum_probs=33.9
Q ss_pred CceeeeEECC-CCcEEEEEeCCCCCCceeccCCCCCHHHHHHHHHHHHHHhc
Q 040188 23 NHSRGVRQTP-SGKFAAEIRDPAKKGARCWLETFATAEQAALANVRAAFKFR 73 (117)
Q Consensus 23 S~yrGV~~~~-~GkW~A~I~~~~~~gk~~~LGtF~t~EeAA~AYD~aa~~~~ 73 (117)
.+|-||..|- .-+-.+.|.. .||-+-.| ..|+|||..|.+..+..+.
T Consensus 34 e~fpgli~Rl~~Pk~t~lIF~---SGKiviTG-aks~e~a~~a~~~~~~~L~ 81 (179)
T PLN00062 34 KRFAAVIMRIREPKTTALIFA---SGKMVCTG-AKSEHDSKLAARKYARIIQ 81 (179)
T ss_pred ccCcEEEEEeCCCcEEEEEEC---CCeEEEEe-cCCHHHHHHHHHHHHHHHH
Confidence 4788986553 5667788884 46666555 4788999999998877773
No 21
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=22.15 E-value=70 Score=19.61 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHH
Q 040188 54 TFATAEQAALAN 65 (117)
Q Consensus 54 tF~t~EeAA~AY 65 (117)
.|.|.+||..|-
T Consensus 39 ~Y~t~~eA~~Aa 50 (53)
T PF14882_consen 39 FYPTYEEASKAA 50 (53)
T ss_pred ccCCHHHHHHHH
Confidence 378999998773
No 22
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.84 E-value=31 Score=17.44 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=6.9
Q ss_pred ceeccCCCC
Q 040188 48 ARCWLETFA 56 (117)
Q Consensus 48 k~~~LGtF~ 56 (117)
-.+|+||+.
T Consensus 16 G~lWigT~~ 24 (24)
T PF07494_consen 16 GNLWIGTYN 24 (24)
T ss_dssp SCEEEEETS
T ss_pred cCEEEEeCC
Confidence 479999874
Done!