Query 040192
Match_columns 386
No_of_seqs 181 out of 2530
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.4E-23 7.4E-28 216.6 17.3 306 10-340 48-365 (968)
2 KOG4658 Apoptotic ATPase [Sign 99.9 1.4E-23 3.1E-28 210.5 12.2 363 13-382 479-883 (889)
3 PLN03210 Resistant to P. syrin 99.9 6.4E-22 1.4E-26 208.1 20.5 297 35-349 593-911 (1153)
4 PLN00113 leucine-rich repeat r 99.9 5.4E-22 1.2E-26 207.7 18.5 240 32-285 94-342 (968)
5 KOG4194 Membrane glycoprotein 99.9 7.9E-24 1.7E-28 193.9 1.8 296 33-350 80-434 (873)
6 KOG4194 Membrane glycoprotein 99.9 8E-23 1.7E-27 187.4 4.5 293 33-339 104-447 (873)
7 KOG0444 Cytoskeletal regulator 99.8 1.9E-22 4.1E-27 186.5 -2.6 193 32-230 33-234 (1255)
8 PLN03210 Resistant to P. syrin 99.8 1.9E-19 4.1E-24 189.5 19.4 293 32-346 612-945 (1153)
9 KOG0444 Cytoskeletal regulator 99.8 2.4E-20 5.1E-25 172.7 -1.5 300 33-353 57-384 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 1.2E-20 2.6E-25 166.1 -4.2 285 33-342 185-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 8.2E-20 1.8E-24 160.9 -9.1 261 55-364 46-308 (565)
12 KOG4237 Extracellular matrix p 99.7 8.8E-18 1.9E-22 147.9 2.1 275 21-318 36-357 (498)
13 PRK15387 E3 ubiquitin-protein 99.7 3E-15 6.5E-20 148.0 16.6 267 18-341 188-455 (788)
14 PRK15370 E3 ubiquitin-protein 99.6 2.5E-15 5.3E-20 149.3 12.8 257 18-341 165-425 (754)
15 KOG0618 Serine/threonine phosp 99.6 2E-16 4.2E-21 152.9 -1.3 242 55-319 220-488 (1081)
16 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.4E-21 125.6 -4.2 161 43-231 23-186 (264)
17 KOG0618 Serine/threonine phosp 99.5 2.1E-15 4.6E-20 145.9 0.9 270 55-355 46-333 (1081)
18 PRK15370 E3 ubiquitin-protein 99.5 1.7E-13 3.8E-18 136.3 11.3 230 55-352 179-408 (754)
19 PRK15387 E3 ubiquitin-protein 99.5 3.9E-13 8.5E-18 133.2 13.5 233 32-318 223-456 (788)
20 KOG0617 Ras suppressor protein 99.4 5.5E-15 1.2E-19 116.2 -3.8 150 33-188 35-188 (264)
21 KOG4237 Extracellular matrix p 99.4 9.1E-15 2E-19 129.1 -5.2 122 77-201 68-194 (498)
22 cd00116 LRR_RI Leucine-rich re 99.3 1.2E-12 2.5E-17 120.0 3.0 256 49-340 19-316 (319)
23 cd00116 LRR_RI Leucine-rich re 99.2 5.8E-12 1.3E-16 115.4 5.3 255 33-318 25-318 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.2 1.9E-11 4E-16 123.8 9.2 296 33-351 525-867 (889)
25 KOG4341 F-box protein containi 99.2 6.7E-13 1.4E-17 118.3 -2.6 278 55-346 139-441 (483)
26 PF14580 LRR_9: Leucine-rich r 99.2 1.8E-11 3.9E-16 100.0 5.2 138 41-183 7-150 (175)
27 KOG3207 Beta-tubulin folding c 99.1 7.9E-12 1.7E-16 112.1 0.9 205 51-284 119-335 (505)
28 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 95.5 5.8 123 32-157 20-149 (175)
29 KOG3207 Beta-tubulin folding c 99.1 2.1E-11 4.6E-16 109.4 0.3 205 73-317 118-336 (505)
30 KOG2120 SCF ubiquitin ligase, 99.1 3.3E-12 7.1E-17 109.2 -4.6 182 125-342 185-374 (419)
31 KOG4341 F-box protein containi 99.0 3.5E-11 7.5E-16 107.5 -1.1 282 76-371 138-444 (483)
32 KOG0532 Leucine-rich repeat (L 98.9 4.7E-11 1E-15 110.6 -3.4 194 33-268 52-249 (722)
33 COG4886 Leucine-rich repeat (L 98.9 2.1E-09 4.5E-14 101.6 6.5 189 59-286 98-288 (394)
34 KOG2120 SCF ubiquitin ligase, 98.9 1.1E-10 2.3E-15 100.1 -3.4 199 101-334 185-390 (419)
35 COG4886 Leucine-rich repeat (L 98.8 7.4E-09 1.6E-13 97.8 7.0 192 36-267 98-292 (394)
36 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.5E-14 94.0 1.1 127 148-318 284-410 (490)
37 KOG0532 Leucine-rich repeat (L 98.8 2.9E-10 6.2E-15 105.5 -3.4 212 59-317 55-270 (722)
38 KOG1259 Nischarin, modulator o 98.7 3.7E-09 8E-14 90.9 2.3 131 49-188 210-344 (490)
39 KOG1909 Ran GTPase-activating 98.7 2E-09 4.4E-14 94.3 0.7 237 49-317 26-308 (382)
40 KOG2982 Uncharacterized conser 98.6 2.9E-08 6.2E-13 85.5 2.4 212 78-325 47-267 (418)
41 PF13855 LRR_8: Leucine rich r 98.5 7.2E-08 1.6E-12 64.7 3.6 58 77-136 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.4 3.2E-07 6.9E-12 61.6 3.9 58 126-184 2-60 (61)
43 KOG1909 Ran GTPase-activating 98.4 4.5E-08 9.7E-13 86.0 -1.0 227 33-287 32-310 (382)
44 PLN03150 hypothetical protein; 98.3 1.9E-06 4E-11 85.8 9.4 103 78-183 420-525 (623)
45 KOG2982 Uncharacterized conser 98.3 3.1E-07 6.7E-12 79.2 2.9 206 122-364 68-287 (418)
46 KOG0531 Protein phosphatase 1, 98.3 1.5E-07 3.3E-12 89.3 0.1 130 55-191 73-204 (414)
47 PLN03150 hypothetical protein; 98.3 3.6E-06 7.7E-11 83.8 9.1 109 55-165 419-532 (623)
48 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.6E-12 88.9 -0.6 193 75-317 71-265 (414)
49 KOG4579 Leucine-rich repeat (L 98.1 6.7E-07 1.5E-11 68.4 -0.3 109 55-166 28-140 (177)
50 KOG1859 Leucine-rich repeat pr 98.0 1.2E-07 2.5E-12 91.0 -6.4 89 102-194 165-253 (1096)
51 KOG1947 Leucine rich repeat pr 98.0 1.5E-06 3.2E-11 84.3 -0.0 115 73-187 185-309 (482)
52 KOG1947 Leucine rich repeat pr 98.0 1.2E-06 2.6E-11 85.0 -0.8 137 98-262 185-331 (482)
53 PRK15386 type III secretion pr 98.0 7.2E-05 1.6E-09 69.1 10.6 32 251-284 155-186 (426)
54 PRK15386 type III secretion pr 97.9 6.8E-05 1.5E-09 69.3 10.1 13 218-230 156-168 (426)
55 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4.1E-10 64.6 5.5 101 55-157 43-149 (233)
56 KOG1859 Leucine-rich repeat pr 97.9 2.1E-07 4.5E-12 89.3 -7.1 125 55-185 165-291 (1096)
57 PF12799 LRR_4: Leucine Rich r 97.9 2.4E-05 5.2E-10 48.2 4.3 33 126-158 2-34 (44)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 49.0 3.4 40 101-141 1-40 (44)
59 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.4E-10 80.4 2.9 131 55-187 123-264 (699)
60 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4E-10 78.8 3.0 106 125-231 122-233 (699)
61 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 59.1 5.0 129 55-187 20-154 (233)
62 KOG4579 Leucine-rich repeat (L 97.5 1.2E-05 2.5E-10 61.7 -1.9 108 32-143 28-141 (177)
63 COG5238 RNA1 Ran GTPase-activa 97.0 0.00049 1.1E-08 59.2 2.8 82 75-158 29-130 (388)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00012 2.7E-09 62.4 -1.0 90 214-317 61-153 (260)
65 COG5238 RNA1 Ran GTPase-activa 97.0 0.00023 4.9E-09 61.2 0.6 114 73-188 89-229 (388)
66 KOG2123 Uncharacterized conser 97.0 7.9E-05 1.7E-09 64.1 -2.3 96 55-154 20-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00066 1.4E-08 58.1 2.7 82 55-138 44-129 (260)
68 KOG2123 Uncharacterized conser 96.7 9.5E-05 2.1E-09 63.6 -3.5 100 75-179 18-123 (388)
69 KOG3864 Uncharacterized conser 96.7 0.00022 4.7E-09 58.6 -1.6 65 250-321 123-190 (221)
70 KOG3864 Uncharacterized conser 96.7 0.00027 5.9E-09 58.0 -1.2 72 211-290 118-191 (221)
71 PF13306 LRR_5: Leucine rich r 96.3 0.016 3.5E-07 44.9 6.7 112 55-175 13-128 (129)
72 PF13306 LRR_5: Leucine rich r 95.7 0.03 6.4E-07 43.4 5.8 13 97-109 8-20 (129)
73 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3E-07 29.8 0.7 15 127-141 2-16 (22)
74 PF13504 LRR_7: Leucine rich r 93.7 0.045 9.9E-07 25.9 1.4 15 126-140 2-16 (17)
75 PF00560 LRR_1: Leucine Rich R 92.9 0.049 1.1E-06 27.7 0.8 19 103-122 2-20 (22)
76 smart00367 LRR_CC Leucine-rich 89.5 0.21 4.6E-06 26.5 1.3 17 330-346 1-17 (26)
77 smart00369 LRR_TYP Leucine-ric 87.6 0.65 1.4E-05 24.5 2.3 19 125-143 2-20 (26)
78 smart00370 LRR Leucine-rich re 87.6 0.65 1.4E-05 24.5 2.3 19 125-143 2-20 (26)
79 KOG0473 Leucine-rich repeat pr 78.7 0.046 9.9E-07 46.3 -6.7 85 49-137 38-123 (326)
80 KOG0473 Leucine-rich repeat pr 78.7 0.07 1.5E-06 45.2 -5.6 86 73-161 39-124 (326)
81 smart00364 LRR_BAC Leucine-ric 70.5 3 6.6E-05 22.1 1.3 17 126-142 3-19 (26)
82 KOG3763 mRNA export factor TAP 70.3 1.9 4.2E-05 41.4 0.9 80 250-337 216-307 (585)
83 smart00365 LRR_SD22 Leucine-ri 60.8 8.1 0.00018 20.5 1.8 15 125-139 2-16 (26)
84 PF13516 LRR_6: Leucine Rich r 60.0 5.9 0.00013 20.2 1.2 10 149-158 3-12 (24)
85 KOG3763 mRNA export factor TAP 56.6 2.5 5.3E-05 40.8 -1.1 90 216-314 216-308 (585)
86 smart00368 LRR_RI Leucine rich 49.6 15 0.00033 19.6 1.8 14 125-138 2-15 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=3.4e-23 Score=216.63 Aligned_cols=306 Identities=19% Similarity=0.215 Sum_probs=181.9
Q ss_pred ccCCCeeechhHHHhhhcccc-ccccEEEEcCCCCCCC--CcccccccCccEEEecCCcccc-cCCC--CCCCCCcEEec
Q 040192 10 VETWKCTKEAMLPRMSSDIEE-EKEEHLVYAGAGLSET--PDVRKWEKNVRRLSLMENQIEN-LSEV--PTCPYLRTLFL 83 (386)
Q Consensus 10 ~~~~~~~~~d~~~~~~~~~~~-~~~~~l~~~~~~l~~~--p~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~L~~L~l 83 (386)
+..|.- -.|.+.|.++.|.. .+...+++.+..+.+. +.+..++ +|+.|++++|.+.+ +|.. ..+++|++|++
T Consensus 48 ~~~w~~-~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~-~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L 125 (968)
T PLN00113 48 LSNWNS-SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125 (968)
T ss_pred CCCCCC-CCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCC-CCCEEECCCCccCCcCChHHhccCCCCCEEEC
Confidence 345753 25678888888863 2455667777766544 3477788 89999999998875 6654 47888888888
Q ss_pred ccCcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCccc
Q 040192 84 NNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRL 161 (386)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~ 161 (386)
++|...+.+|. +.+++|++|++++| .+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|...
T Consensus 126 s~n~l~~~~p~---~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 126 SNNNFTGSIPR---GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred cCCccccccCc---cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence 88733334442 45677777777777 444 55666777777777777777765 56666777777777777777555
Q ss_pred cccchhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhccc
Q 040192 162 TVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDY 238 (386)
Q Consensus 162 ~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 238 (386)
..+|.. ++.+.+|+.|++++|.+.+. ..+..+++|+.|. ..+...+..+..+..+++|+.|++++|+.....+ ..
T Consensus 202 ~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~ 279 (968)
T PLN00113 202 GQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PS 279 (968)
T ss_pred CcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hh
Confidence 556654 67777777777777766543 2344555555555 3333344445556666666666666665433221 22
Q ss_pred ccccccCccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192 239 KSVVQNTGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL 317 (386)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (386)
+. .+++|+.|++++|.....++ .+..+++|+.|++.+|. +..... ..+..+++|++|++++|
T Consensus 280 l~---------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~-------~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 280 IF---------SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN-FTGKIP-------VALTSLPRLQVLQLWSN 342 (968)
T ss_pred Hh---------hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc-cCCcCC-------hhHhcCCCCCEEECcCC
Confidence 22 45566666666653222222 24455566666665543 222111 13444555555555555
Q ss_pred cccccccCCCcCCCCccEEeecC
Q 040192 318 PNLKSIYRKPLPFPHLKEMKVIH 340 (386)
Q Consensus 318 ~~l~~~~~~~~~~~~L~~L~i~~ 340 (386)
.....++...+.+++|+.|++++
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCC
Confidence 32223333334445555555544
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-23 Score=210.48 Aligned_cols=363 Identities=36% Similarity=0.543 Sum_probs=270.0
Q ss_pred CCeeechhHH----HhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcC
Q 040192 13 WKCTKEAMLP----RMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAP 88 (386)
Q Consensus 13 ~~~~~~d~~~----~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 88 (386)
..|+|||+.. |.+.....+++..+.-.+.++.++|....+. .+|++++.++.+..++....++.|++|.+.++..
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~-~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWN-SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchh-heeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 6799998855 4555444445556666667888888888887 8999999999999888888888999999999842
Q ss_pred -CCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchh
Q 040192 89 -LRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRR 167 (386)
Q Consensus 89 -~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 167 (386)
+..++..+|..++.|++||+++|.....+|..++.+-+||+|+++++.+..+|..++++.+|.+|++..+.....++.
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~- 636 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG- 636 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-
Confidence 677888889999999999999998888999999999999999999999999999999999999999998866556644
Q ss_pred hhcCCCCCcEEEEeccCCccc-cCCCcCccccccc------c-------------------eee----cCCccccccccc
Q 040192 168 LISSFSSLHVLRIFGSGYSYS-DGMIGNGEFEQLC------G-------------------FRR----SKSLDVSALADL 217 (386)
Q Consensus 168 ~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~------~-------------------~~~----~~~~~~~~l~~~ 217 (386)
+...+.+|++|.+........ .....+.+|+.|. . ... ........+..+
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l 716 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL 716 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc
Confidence 467799999999988763222 1122222333332 0 001 011225566778
Q ss_pred cCCcEEEeeccCCccchhcccccccccCccccc-cCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCc
Q 040192 218 KRLNRLKIAECYGLAELKMDYKSVVQNTGQSFV-FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVP 296 (386)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~ 296 (386)
.+|+.|.+.+|...+. ...+....... . ++++.++.+.+|....++.+....|+|++|.+..|..+++++....
T Consensus 717 ~~L~~L~i~~~~~~e~-~~~~~~~~~~~----~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k 791 (889)
T KOG4658|consen 717 GNLEELSILDCGISEI-VIEWEESLIVL----LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLK 791 (889)
T ss_pred cCcceEEEEcCCCchh-hcccccccchh----hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHH
Confidence 8999999999987652 22332211111 3 6788889999998899999888899999999999999998876322
Q ss_pred ccc--cCCCCccccccee-eeccccccccccCCCcCCCCccEEeecCcccCcCCCCCccccc-C--cceEEEchHHHHhh
Q 040192 297 EVM--MGNLNPFAQFHFL-CFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAK-E--RKIVIRGSRERWEQ 370 (386)
Q Consensus 297 ~~~--~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~--~l~i~~~~~~~~~~ 370 (386)
... ......|++++.+ -+.+.+.+..+......++.|+.+.+..||++.++|....... . ...+...+.+|.+.
T Consensus 792 ~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~ 871 (889)
T KOG4658|consen 792 ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEG 871 (889)
T ss_pred HhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceee
Confidence 221 1123455666666 4666666666666666788899999999999999999865554 2 33444444578899
Q ss_pred hhcccccccccc
Q 040192 371 LQWENQATKNAF 382 (386)
Q Consensus 371 ~~~~~~~~~~~~ 382 (386)
++|++.+.+..|
T Consensus 872 v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 872 VYWEDELTKLRF 883 (889)
T ss_pred EEehhhhhhhhc
Confidence 999999887765
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=6.4e-22 Score=208.06 Aligned_cols=297 Identities=22% Similarity=0.266 Sum_probs=152.8
Q ss_pred EEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcc
Q 040192 35 HLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113 (386)
Q Consensus 35 ~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 113 (386)
.+.+.+..+..+|...... +|+.|++.++.+..++.. ..+++|+.|+++++..+..+|. ++.+++|++|++.+|..
T Consensus 593 ~L~~~~~~l~~lP~~f~~~-~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 593 LLRWDKYPLRCMPSNFRPE-NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS 669 (1153)
T ss_pred EEEecCCCCCCCCCcCCcc-CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC
Confidence 3334444444444433334 555555555555554333 4555566666655544444443 44555666666655544
Q ss_pred ccccchhhcCCCccCEEEcCCC-CCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCC
Q 040192 114 LYSFPLGISKLISLQHLDLSNT-GIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMI 192 (386)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 192 (386)
+..+|..++++++|+.|++++| .+..+|..+ .+++|+.|++++|..+..+|.. ..+|+.|+++++.+.......
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccc
Confidence 5555555555666666666554 334555433 4555666666655444444431 235556666655544432222
Q ss_pred cCccccccccee-ec-------CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCC
Q 040192 193 GNGEFEQLCGFR-RS-------KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKE 264 (386)
Q Consensus 193 ~l~~L~~L~~~~-~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (386)
.+++|..|..+. .. ..........+++|+.|++++|.....++.. +. .+++|+.|++++|..
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~---------~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQ---------NLHKLEHLEIENCIN 814 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hh---------CCCCCCEEECCCCCC
Confidence 334444333110 00 0000011112346666666666554433222 22 566777777777666
Q ss_pred CCccccccCCCCCcEEeecCCCccchhhccCc----------ccc--cCCCCcccccceeeeccccccccccCCCcCCCC
Q 040192 265 LKDLTFLIFAPNLKSIEVDSCYALEEIVSDVP----------EVM--MGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPH 332 (386)
Q Consensus 265 l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~----------~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 332 (386)
++.+|....+++|+.|++++|..+..++.... ... ...+..+++|++|++++|..+..++.....+++
T Consensus 815 L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 815 LETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred cCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 66655444566666666666665544322000 000 013455667777777777777776666666777
Q ss_pred ccEEeecCcccCcCCCC
Q 040192 333 LKEMKVIHCLKLKKLPL 349 (386)
Q Consensus 333 L~~L~i~~c~~L~~l~~ 349 (386)
|+.+++++|++|+.++.
T Consensus 895 L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 895 LETVDFSDCGALTEASW 911 (1153)
T ss_pred CCeeecCCCcccccccC
Confidence 77777777777776554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=5.4e-22 Score=207.65 Aligned_cols=240 Identities=21% Similarity=0.242 Sum_probs=150.4
Q ss_pred cccEEEEcCCCCC-CCCc--ccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192 32 KEEHLVYAGAGLS-ETPD--VRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108 (386)
Q Consensus 32 ~~~~l~~~~~~l~-~~p~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 108 (386)
..+.+.+.++.+. .+|. +..+. +|++|++++|.+.+..+...+++|++|++++|...+.+|.. ++.+++|++|++
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L 171 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDL 171 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEEC
Confidence 3667778777765 4554 23666 88888888888876333466788888888888333345554 678888888888
Q ss_pred cCCccc-cccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192 109 SGAIRL-YSFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS 186 (386)
Q Consensus 109 ~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 186 (386)
++| .+ ..+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.....+|.. ++.+++|++|++++|.+.
T Consensus 172 ~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 172 GGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec
Confidence 887 44 356777788888888888888776 56777778888888888887665566665 777888888888877765
Q ss_pred cc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192 187 YS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK 263 (386)
Q Consensus 187 ~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (386)
+. ..+..+++|+.|. ..+...+..+..+..+++|++|++++|...... +.++. .+++|+.|++++|.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~---------~l~~L~~L~l~~n~ 319 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PELVI---------QLQNLEILHLFSNN 319 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-ChhHc---------CCCCCcEEECCCCc
Confidence 43 2344555555555 223333444555556666666666666443322 22222 34555555555543
Q ss_pred CCCcc-ccccCCCCCcEEeecCC
Q 040192 264 ELKDL-TFLIFAPNLKSIEVDSC 285 (386)
Q Consensus 264 ~l~~~-~~l~~l~~L~~L~l~~c 285 (386)
....+ ..+..+++|+.|++++|
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCC
Confidence 22222 22344444444444443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=7.9e-24 Score=193.91 Aligned_cols=296 Identities=18% Similarity=0.219 Sum_probs=179.6
Q ss_pred ccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 33 EEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
...++++++.+.++. .+..++ +|+.+++..|.++.+|.. .-..+|+.|++.+| .+..+..+.++.++.|+.||++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 345777777777663 357777 888888888888888888 44556888888888 7777776667788888888888
Q ss_pred CCccccccc-hhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
.| .+..++ ..|-.-.++++|++++|.|+.+. ..+..+.+|..|.|+.| .++.+|..+|++++.|+.|++..|.+..
T Consensus 158 rN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 158 RN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee
Confidence 88 777765 24444467888888888887654 34566778888888888 6677777777888888888888877665
Q ss_pred c--cCCCcCccccccc-ceeecCC------------------------ccccccccccCCcEEEeeccCCccchhccccc
Q 040192 188 S--DGMIGNGEFEQLC-GFRRSKS------------------------LDVSALADLKRLNRLKIAECYGLAELKMDYKS 240 (386)
Q Consensus 188 ~--~~~~~l~~L~~L~-~~~~~~~------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 240 (386)
. ..+.+++.|+.++ ..+.+.. .....+..++.|+.|++++|.+.+-....|-
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws- 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS- 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-
Confidence 5 2344555555555 1111111 1122233344444444444433322122221
Q ss_pred ccccCccccccCcccEEEecCCCCCCccc--------------------------cccCCCCCcEEeecCCCccchhhcc
Q 040192 241 VVQNTGQSFVFHSLKKFQISYCKELKDLT--------------------------FLIFAPNLKSIEVDSCYALEEIVSD 294 (386)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--------------------------~l~~l~~L~~L~l~~c~~~~~~~~~ 294 (386)
.+++|+.|+|+.| .++.++ .+..+++|++|+|+++. +.-.+++
T Consensus 315 ---------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IED 383 (873)
T KOG4194|consen 315 ---------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIED 383 (873)
T ss_pred ---------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEec
Confidence 3445555555554 233322 12234555555555522 3222222
Q ss_pred CcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCC
Q 040192 295 VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLD 350 (386)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~ 350 (386)
. . ..+.++++|+.|++.|+ .+++++. +...+++|+.|++.+ +-+.++...
T Consensus 384 a-a---~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~n 434 (873)
T KOG4194|consen 384 A-A---VAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD-NAIASIQPN 434 (873)
T ss_pred c-h---hhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC-Ccceeeccc
Confidence 1 1 24555677777777666 6666664 345577777777766 455555433
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=8e-23 Score=187.37 Aligned_cols=293 Identities=19% Similarity=0.263 Sum_probs=171.5
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
.+-+.+..+.+..+|.+.....+++.|++.+|.|+.+... ..++.|++|+++.| .+..++...|..-.++++|++++
T Consensus 104 Lq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 104 LQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLAS 182 (873)
T ss_pred ceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecc
Confidence 4455666667777777666664577777777777765444 66777777777776 66666654455566677777776
Q ss_pred Ccccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccccc------------------------
Q 040192 111 AIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVI------------------------ 164 (386)
Q Consensus 111 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~------------------------ 164 (386)
| .++.+ ...|..+.+|..|.+++|+++.+|. .+.++++|+.|+|..| .++.+
T Consensus 183 N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 183 N-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred c-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 6 66655 3345556666666666666666664 3334666666666555 22222
Q ss_pred chhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccc
Q 040192 165 PRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSV 241 (386)
Q Consensus 165 ~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (386)
..++|-.|.++++|++..|.+... +..-++..|+.|. +.+.+....+..+..+++|+.|++++|+..+ ++...+..
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~ 339 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRV 339 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHH
Confidence 222334444445555555444433 2233444444444 2233333345555556666666666665432 22222210
Q ss_pred ---cccC------------ccccccCcccEEEecCCCC---CCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCC
Q 040192 242 ---VQNT------------GQSFVFHSLKKFQISYCKE---LKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGN 302 (386)
Q Consensus 242 ---~~~~------------~~~~~~~~L~~L~l~~~~~---l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 302 (386)
++.. |.+..+++|+.|+|.+|.. +++- ....+++.|+.|++.+ ++++++... .
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr-------A 411 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR-------A 411 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchh-------h
Confidence 0000 0011567888888887732 2222 1245699999999999 669999884 8
Q ss_pred CCcccccceeeeccccccccccC-CCcCCCCccEEeec
Q 040192 303 LNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVI 339 (386)
Q Consensus 303 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~ 339 (386)
+.++++||.|+|.++ -+.++-. +...+ .|++|.+.
T Consensus 412 fsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hccCcccceecCCCC-cceeecccccccc-hhhhhhhc
Confidence 999999999999998 4555532 33444 66666553
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.9e-22 Score=186.46 Aligned_cols=193 Identities=22% Similarity=0.338 Sum_probs=138.4
Q ss_pred cccEEEEcCCCCCCCCc-ccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCC--cCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSETPD-VRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLR--RIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~ 107 (386)
+..++.+.+.++..+|. ++.+. +|++|++..|++..+-.. ..++.||.+.+..| .++ .+|+.+ -++..|.+|+
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lq-kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~di-F~l~dLt~lD 109 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQ-KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDI-FRLKDLTILD 109 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHh-hhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchh-cccccceeee
Confidence 36788899999999986 77777 999999999988875544 88888888888887 554 567774 4788888999
Q ss_pred ccCCccccccchhhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192 108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS 186 (386)
Q Consensus 108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 186 (386)
+++| .+.++|..+...+++-+|++++|.|..+|.. +.++..|-.|+++.| .+..+|+. +.++..|+.|.+++|++.
T Consensus 110 LShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 9888 8888888888888888888888888888844 457788888888888 67788876 788888888888888766
Q ss_pred cc--cCCCcCccccccc--ceeecCCccccccccccCCcEEEeeccCC
Q 040192 187 YS--DGMIGNGEFEQLC--GFRRSKSLDVSALADLKRLNRLKIAECYG 230 (386)
Q Consensus 187 ~~--~~~~~l~~L~~L~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 230 (386)
-. .....|..|+.|. +..+-....+.++..+.+|+.++++.|..
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 54 1222333333333 11111223345555555566666555533
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.9e-19 Score=189.53 Aligned_cols=293 Identities=20% Similarity=0.300 Sum_probs=188.7
Q ss_pred cccEEEEcCCCCCCCCc-ccccccCccEEEecCC-cccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 32 KEEHLVYAGAGLSETPD-VRKWEKNVRRLSLMEN-QIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
....+.+.+..+..++. +..++ +|+.|+++++ .+..+|....+++|++|++.+|..+..+|.. ++.+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~-~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLT-GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCccccccccccccCC-CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCC
Confidence 45667777777777654 55677 9999999987 4666887788999999999998777788877 7899999999999
Q ss_pred CCccccccchhhcCCCccCEEEcCCCCC-CcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 110 GAIRLYSFPLGISKLISLQHLDLSNTGI-AELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
+|..+..+|..+ ++++|+.|++++|.. ..+|.. ..+|+.|+++++ .+..+|.. ..+++|+.|++..+.....
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~--~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSN--LRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-cccccccc--ccccccccccccccchhhc
Confidence 987788888655 788999999998853 355532 467888888888 45667653 2456666665554221110
Q ss_pred ---------cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccc--------------ccc
Q 040192 189 ---------DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSV--------------VQN 244 (386)
Q Consensus 189 ---------~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------~~~ 244 (386)
......+.|+.|. ..+...+..+..+..+++|+.|++++|..+..++... .- ...
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 0001122333333 1111112234445556666666666655444332211 00 000
Q ss_pred CccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccc
Q 040192 245 TGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI 323 (386)
Q Consensus 245 ~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 323 (386)
++ ...+|+.|++++| .++.+| ++..+++|+.|+|.+|+.++.++. ....+++|+.+++++|.++.++
T Consensus 842 p~---~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 842 PD---ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cc---cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCcccccc
Confidence 00 2234555555554 344443 356789999999999999998765 5677899999999999988865
Q ss_pred cCCC-------------cCCCCccEEeecCcccCcC
Q 040192 324 YRKP-------------LPFPHLKEMKVIHCLKLKK 346 (386)
Q Consensus 324 ~~~~-------------~~~~~L~~L~i~~c~~L~~ 346 (386)
+... ..+|....+.+.+|.+|..
T Consensus 910 ~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 910 SWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred cCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 4321 1245556667788887765
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=2.4e-20 Score=172.73 Aligned_cols=300 Identities=20% Similarity=0.188 Sum_probs=201.5
Q ss_pred ccEEEEcCCCCCCC-CcccccccCccEEEecCCcccc--cCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192 33 EEHLVYAGAGLSET-PDVRKWEKNVRRLSLMENQIEN--LSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108 (386)
Q Consensus 33 ~~~l~~~~~~l~~~-p~~~~~~~~L~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 108 (386)
..++....+++..+ ..++.++ .||.+.+..|++.. +|.. .++..|+.|++++| .+...|.. +.+.+++-+|++
T Consensus 57 LEHLs~~HN~L~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 57 LEHLSMAHNQLISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhHhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchh-hhhhcCcEEEEc
Confidence 56677776677655 4577788 89999998887765 7766 88999999999998 88888887 678899999999
Q ss_pred cCCccccccch-hhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 109 SGAIRLYSFPL-GISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 109 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
++| .+..+|. .+.+++.|-+||+++|++..+|+.+..+..|++|.+++|+.. .+...-+..+.+|..|++++++-+-
T Consensus 134 S~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 134 SYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchh
Confidence 998 8888874 457889999999999999999999999999999999998542 2221125567788888888876554
Q ss_pred c---cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192 188 S---DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK 263 (386)
Q Consensus 188 ~---~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (386)
. ..+..+.+|..+. +++.+. ..++-+-.+++|+.|++++|+..+-..... .-.+|+.|+++.|
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~-----------~W~~lEtLNlSrN- 278 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEG-----------EWENLETLNLSRN- 278 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHH-----------HHhhhhhhccccc-
Confidence 4 2233444444443 222221 235556677889999999987655211111 3357788888887
Q ss_pred CCCccc-cccCCCCCcEEeecCCCccc-hhhccC-----------------cccccCCCCcccccceeeecccccccccc
Q 040192 264 ELKDLT-FLIFAPNLKSIEVDSCYALE-EIVSDV-----------------PEVMMGNLNPFAQFHFLCFSYLPNLKSIY 324 (386)
Q Consensus 264 ~l~~~~-~l~~l~~L~~L~l~~c~~~~-~~~~~~-----------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 324 (386)
.++.+| .++.++.|+.|++.++. ++ +-++.+ ..+ ...+..|++|+.|.|..+ .+-.+|
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~N-rLiTLP 355 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHN-RLITLP 355 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhccccccC-chhhhhhHHHHHhccccc-ceeech
Confidence 455554 35666777766666533 22 111100 000 124555667777777666 555666
Q ss_pred CCCcCCCCccEEeecCcccCcCCCCCccc
Q 040192 325 RKPLPFPHLKEMKVIHCLKLKKLPLDSNR 353 (386)
Q Consensus 325 ~~~~~~~~L~~L~i~~c~~L~~l~~~~~~ 353 (386)
.++--++.|+.|++...|+|..=|.....
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 66666777777777777777665554433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.2e-20 Score=166.08 Aligned_cols=285 Identities=22% Similarity=0.267 Sum_probs=190.2
Q ss_pred ccEEEEcCCCCCCCC-cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 33 EEHLVYAGAGLSETP-DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
..++++..+.+..+| .++.+. ++..|+++.|++..+|++.+|..|..|++..| .++-+|.+..++++++.+||+..|
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~-~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLE-SLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred HHhcccchhhhhcCChhhcchh-hhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc
Confidence 556777777777775 477777 88888888888888888888888888888888 788888887778888888888888
Q ss_pred ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhh-----------------------
Q 040192 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRL----------------------- 168 (386)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------------- 168 (386)
+++.+|..++.+.+|.+||+++|.++++|..++++ .|+.|.+.+|+. +.+..++
T Consensus 263 -klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 263 -KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred -ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 88888888888888888999888888888888888 788888877743 2221110
Q ss_pred ------------------hcCCCCCcEEEEeccCCcccc------------------------CCCcCccccccc----c
Q 040192 169 ------------------ISSFSSLHVLRIFGSGYSYSD------------------------GMIGNGEFEQLC----G 202 (386)
Q Consensus 169 ------------------l~~l~~L~~L~l~~~~~~~~~------------------------~~~~l~~L~~L~----~ 202 (386)
...+.+.+.|++++-+++... -...+..+..+. .
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 111223344444433222220 011111111111 2
Q ss_pred eeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEee
Q 040192 203 FRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEV 282 (386)
Q Consensus 203 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l 282 (386)
..+..++.+..+..+++|..|++++| .+.+++.+.+ .+..|+.|+++.| ....+|.....+...+..+
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~----------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMG----------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLL 487 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccc-hhhhcchhhh----------hhhhhheeccccc-ccccchHHHhhHHHHHHHH
Confidence 33334555666667777777777766 4445655554 4556777777777 3444443322222222333
Q ss_pred cCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcc
Q 040192 283 DSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCL 342 (386)
Q Consensus 283 ~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 342 (386)
....++..+++ ..+..+.+|.+|++.++ .+..+|...+++.+|+.|++++.|
T Consensus 488 as~nqi~~vd~-------~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 488 ASNNQIGSVDP-------SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hccccccccCh-------HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 33355666655 24778899999999888 888999999999999999998843
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=8.2e-20 Score=160.88 Aligned_cols=261 Identities=21% Similarity=0.292 Sum_probs=189.8
Q ss_pred CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 133 (386)
.++.+.++.|++..+... ..+..|.+|.++.| .....|++ ++.+..+..++.+++ ++..+|+.++.+.+++.++++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcc
Confidence 577888888888875544 88888899998888 77788877 678888888888888 888888888888899999999
Q ss_pred CCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192 134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA 213 (386)
Q Consensus 134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~ 213 (386)
+|.+.++|+.++.+..++.++...| .+..+|.. +..+.+|..+++.+|.+... +..
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l----------------------~~~ 178 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKAL----------------------PEN 178 (565)
T ss_pred ccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhhC----------------------CHH
Confidence 9988888888888888988888888 66777776 78888888888888877665 122
Q ss_pred cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhc
Q 040192 214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVS 293 (386)
Q Consensus 214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~ 293 (386)
.-.++.|++|+...|- ++.++.+.. .+.+|+.|++..| .+..+|.+.++..|++|++.. +.++.++.
T Consensus 179 ~i~m~~L~~ld~~~N~-L~tlP~~lg----------~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpa 245 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNL-LETLPPELG----------GLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPA 245 (565)
T ss_pred HHHHHHHHhcccchhh-hhcCChhhc----------chhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHH
Confidence 2235666666655542 222333332 5667777777777 466666777777777777776 44666666
Q ss_pred cCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCccccc-CcceEEEch
Q 040192 294 DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAK-ERKIVIRGS 364 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~~l~i~~~~ 364 (386)
+ ....+++|.+||++++ ++++.|.+...+.+|+.|++++ +.+..+|.....++ +.+.+...|
T Consensus 246 e-------~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 246 E-------HLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred H-------Hhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCCc
Confidence 3 5556777777777777 6777777777777777777777 57777777666664 444444444
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=8.8e-18 Score=147.86 Aligned_cols=275 Identities=17% Similarity=0.212 Sum_probs=206.3
Q ss_pred HHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhc
Q 040192 21 LPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQ 98 (386)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~ 98 (386)
+-..+|.|+..+...++|.+.++.++|. .+|+..+.+.+..|+|+.+|+. ..+++||.|++++| .++.+.+.+|.
T Consensus 36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~ 112 (498)
T KOG4237|consen 36 ACPAPCTCSDVEGGIVDCRGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFK 112 (498)
T ss_pred cCCCCcccCCCCCceEEccCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhh
Confidence 3356777776667889999999999986 6676889999999999999887 89999999999999 99999988899
Q ss_pred CCCcCceecccCCccccccch-hhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCc
Q 040192 99 SMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLH 176 (386)
Q Consensus 99 ~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 176 (386)
+++.+..|-+.++.+++.+|. .|+++..++.|.+.-|.+..++ ..+..++++..|.+.+| .+..++...+..+.+++
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~ 191 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIK 191 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccc
Confidence 999999998888449999974 6799999999999999888655 57789999999999999 77888876688889999
Q ss_pred EEEEeccCCccccC--------------CCcCccccccc----------------------ceeecCC-----ccccccc
Q 040192 177 VLRIFGSGYSYSDG--------------MIGNGEFEQLC----------------------GFRRSKS-----LDVSALA 215 (386)
Q Consensus 177 ~L~l~~~~~~~~~~--------------~~~l~~L~~L~----------------------~~~~~~~-----~~~~~l~ 215 (386)
.+++..+.+..... .+...-..... .....++ ....-+.
T Consensus 192 tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~ 271 (498)
T KOG4237|consen 192 TLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFK 271 (498)
T ss_pred hHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHh
Confidence 98887766332200 00000000000 0011111 1123356
Q ss_pred cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCCCccchhhc
Q 040192 216 DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSCYALEEIVS 293 (386)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~ 293 (386)
.+++|+.|++++|+... +...+|. ....++.|.+..| .+..+. .+.++..|+.|+|.+ ++|+.+.+
T Consensus 272 ~L~~L~~lnlsnN~i~~-i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~ 339 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITR-IEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP 339 (498)
T ss_pred hcccceEeccCCCccch-hhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec
Confidence 78889999999887655 5556665 6788888888888 566653 356788888899988 55777766
Q ss_pred cCcccccCCCCcccccceeeecccc
Q 040192 294 DVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
..+....+|.+|++-.+|
T Consensus 340 -------~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 340 -------GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -------ccccccceeeeeehccCc
Confidence 377777888888877543
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=3e-15 Score=148.00 Aligned_cols=267 Identities=19% Similarity=0.161 Sum_probs=180.1
Q ss_pred chhHHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhh
Q 040192 18 EAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFF 97 (386)
Q Consensus 18 ~d~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 97 (386)
+..+....+.|.......+++.+.++..+|.. ++.+++.|.+.+|.++.+|.. .++|++|++++| .+..+|..
T Consensus 188 r~~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~--l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l-- 260 (788)
T PRK15387 188 RAAVVQKMRACLNNGNAVLNVGESGLTTLPDC--LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSLPVL-- 260 (788)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCCCCCcCCcc--hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcccCc--
Confidence 34556666677776788999999999999872 223899999999999988764 689999999999 78777642
Q ss_pred cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcE
Q 040192 98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHV 177 (386)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 177 (386)
.++|+.|++.+| .+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++| .+..+|.. ..+|+.
T Consensus 261 --p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~ 326 (788)
T PRK15387 261 --PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCK 326 (788)
T ss_pred --ccccceeeccCC-chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccc
Confidence 467889999888 77777653 25678888999988888753 467899999888 45556541 235667
Q ss_pred EEEeccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccE
Q 040192 178 LRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKK 256 (386)
Q Consensus 178 L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 256 (386)
|++++|.+.... .....|+.|. +.+.+.+. +. ..++|+.|++++|+... ++ . ...+|+.
T Consensus 327 L~Ls~N~L~~LP--~lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~-LP--~-----------l~~~L~~ 386 (788)
T PRK15387 327 LWAYNNQLTSLP--TLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LP--A-----------LPSGLKE 386 (788)
T ss_pred cccccCcccccc--ccccccceEecCCCccCCC-CC---CCcccceehhhcccccc-Cc--c-----------cccccce
Confidence 777777766542 1223455444 22222211 11 13466777777664332 21 1 3357888
Q ss_pred EEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEE
Q 040192 257 FQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEM 336 (386)
Q Consensus 257 L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 336 (386)
|++++| .++.++.. .++|+.|+++++. +..++. .+.+|+.|+++++ .+..+|.....+++|+.|
T Consensus 387 LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 387 LIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTV 450 (788)
T ss_pred EEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccChHHhhccCCCeE
Confidence 888887 45655532 3678888888854 655432 1346778888887 677777767778888888
Q ss_pred eecCc
Q 040192 337 KVIHC 341 (386)
Q Consensus 337 ~i~~c 341 (386)
+++++
T Consensus 451 dLs~N 455 (788)
T PRK15387 451 NLEGN 455 (788)
T ss_pred ECCCC
Confidence 88774
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=2.5e-15 Score=149.31 Aligned_cols=257 Identities=20% Similarity=0.238 Sum_probs=169.7
Q ss_pred chhHHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhh
Q 040192 18 EAMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFF 97 (386)
Q Consensus 18 ~d~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 97 (386)
++.+.+....|.......+.+.+.++..+|.. ++.+++.|++++|.++.+|... +++|+.|++++| .+..+|..+
T Consensus 165 r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~--Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l- 239 (754)
T PRK15370 165 REEAVQRMRDCLKNNKTELRLKILGLTTIPAC--IPEQITTLILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATL- 239 (754)
T ss_pred HHHHHHHHHhhcccCceEEEeCCCCcCcCCcc--cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhh-
Confidence 55666666667766677788888888888752 2337899999999988877642 358999999988 777777653
Q ss_pred cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcE
Q 040192 98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHV 177 (386)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 177 (386)
...|+.|++++| .+..+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++| .+..+|.. +. ++|+.
T Consensus 240 --~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~ 308 (754)
T PRK15370 240 --PDTIQEMELSIN-RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITH 308 (754)
T ss_pred --hccccEEECcCC-ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHH
Confidence 246889999988 7888776553 478999999998888876553 58999999988 55666653 22 46888
Q ss_pred EEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEE
Q 040192 178 LRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKF 257 (386)
Q Consensus 178 L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 257 (386)
|++++|.+.... ..+ .++|+.|++++|.... ++ .. .+++|+.|
T Consensus 309 L~Ls~N~Lt~LP----------------------~~l--~~sL~~L~Ls~N~Lt~-LP-~~-----------l~~sL~~L 351 (754)
T PRK15370 309 LNVQSNSLTALP----------------------ETL--PPGLKTLEAGENALTS-LP-AS-----------LPPELQVL 351 (754)
T ss_pred HHhcCCccccCC----------------------ccc--cccceeccccCCcccc-CC-hh-----------hcCcccEE
Confidence 888887766541 111 2467777777764332 21 11 34677777
Q ss_pred EecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC----CcCCCCc
Q 040192 258 QISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK----PLPFPHL 333 (386)
Q Consensus 258 ~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~~L 333 (386)
++++| .++.++.. ..++|+.|+|++|. +..++.. ..++|+.|+++++ .+..+|.. ...++.+
T Consensus 352 ~Ls~N-~L~~LP~~-lp~~L~~LdLs~N~-Lt~LP~~----------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 352 DVSKN-QITVLPET-LPPTITTLDVSRNA-LTNLPEN----------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQP 417 (754)
T ss_pred ECCCC-CCCcCChh-hcCCcCEEECCCCc-CCCCCHh----------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCc
Confidence 77777 35544421 13577777777754 5555431 1235777777776 55555432 2234666
Q ss_pred cEEeecCc
Q 040192 334 KEMKVIHC 341 (386)
Q Consensus 334 ~~L~i~~c 341 (386)
..+++.+.
T Consensus 418 ~~L~L~~N 425 (754)
T PRK15370 418 TRIIVEYN 425 (754)
T ss_pred cEEEeeCC
Confidence 77777653
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=2e-16 Score=152.93 Aligned_cols=242 Identities=20% Similarity=0.267 Sum_probs=160.2
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
+++.|..+.|.+........-.+|++++++.+ .+..+| +.++.+.+|+.++..+| .+..+|..+...++|+.|++..
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchh-hhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence 67777777777765444456668888888888 777777 44778888888888888 7777787777888888888888
Q ss_pred CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCC-CcEEEEeccCCccc--cCCCcCccccccc-ceeecCCcc
Q 040192 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSS-LHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLD 210 (386)
Q Consensus 135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~ 210 (386)
|.+..+|+.....+.|++|++..| .+..+|...+..... |+.|+.+.+.+... .+...+.-|+.|. ..++..+..
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 888888877777888888888888 667777654554443 66666666655544 2333445555555 344455555
Q ss_pred ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc---------------------
Q 040192 211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--------------------- 269 (386)
Q Consensus 211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--------------------- 269 (386)
...+..+.+|+.|++++|+... ++...+. .++.|+.|+++|| +++.++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~-fpas~~~---------kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNS-FPASKLR---------KLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred hhhhccccceeeeeeccccccc-CCHHHHh---------chHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceee
Confidence 6777778888888888885443 3333333 5677777777776 344433
Q ss_pred --cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccc
Q 040192 270 --FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPN 319 (386)
Q Consensus 270 --~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 319 (386)
.+..++.|+.+|++. ++++.....+ . ..-|+|++||++|++.
T Consensus 445 fPe~~~l~qL~~lDlS~-N~L~~~~l~~------~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FPELAQLPQLKVLDLSC-NNLSEVTLPE------A-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred chhhhhcCcceEEeccc-chhhhhhhhh------h-CCCcccceeeccCCcc
Confidence 344566677777764 4455554421 1 1116777777777754
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-16 Score=125.63 Aligned_cols=161 Identities=24% Similarity=0.417 Sum_probs=139.9
Q ss_pred CCCCCcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh
Q 040192 43 LSETPDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI 121 (386)
Q Consensus 43 l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 121 (386)
..++|.+..+. +++.|.++.|+++.+|+. ..+.+|+.|.+++| .+.++|.+ ++.++.|+.|++.-+ ++..+|.+|
T Consensus 23 f~~~~gLf~~s-~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmn-rl~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMS-NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMN-RLNILPRGF 98 (264)
T ss_pred Hhhcccccchh-hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchh-hhhcCcccc
Confidence 34567777888 999999999999997766 89999999999999 88999988 789999999999988 888899999
Q ss_pred cCCCccCEEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccc
Q 040192 122 SKLISLQHLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQ 199 (386)
Q Consensus 122 ~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 199 (386)
+.++.|.+||+.+|.+. .+|..+..+..|+.|++++| ...-+|.. ++.+++|+.|.+++|.+...
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~l----------- 165 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLSL----------- 165 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhhC-----------
Confidence 99999999999999886 78888888999999999999 77888887 99999999999999876665
Q ss_pred ccceeecCCccccccccccCCcEEEeeccCCc
Q 040192 200 LCGFRRSKSLDVSALADLKRLNRLKIAECYGL 231 (386)
Q Consensus 200 L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 231 (386)
+..++.+..|++|.|++|+..
T Consensus 166 -----------pkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 166 -----------PKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred -----------cHHHHHHHHHHHHhcccceee
Confidence 445666778888888887543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=2.1e-15 Score=145.89 Aligned_cols=270 Identities=20% Similarity=0.182 Sum_probs=189.8
Q ss_pred CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 133 (386)
+|..|++++|.+..+|.- ..+++|+.|.++.| .+...|.+ ...+.+|+++++..+ ....+|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 688899999998888766 78889999999988 88888866 688999999999888 888889888899999999999
Q ss_pred CCCCCcccHhhhccCCCCEEEccCCccccccchh---------------hhcCCCCCcE-EEEeccCCccccCCCcCccc
Q 040192 134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRR---------------LISSFSSLHV-LRIFGSGYSYSDGMIGNGEF 197 (386)
Q Consensus 134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~l~~l~~L~~-L~l~~~~~~~~~~~~~l~~L 197 (386)
+|.+...|..+..+..++.+..++|..+..++.. +......+++ |++++|.+. ......+.+|
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~~l 201 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLANL 201 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhccch
Confidence 9988888877777777777777766333322221 1122233444 666666665 2233444444
Q ss_pred cccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCC
Q 040192 198 EQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPN 276 (386)
Q Consensus 198 ~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~ 276 (386)
+.+. .++.+.. ..-.-++|+.|+...|.... ..... ...+|+.++++.+....-..|++.+++
T Consensus 202 ~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l~~-~~~~p-----------~p~nl~~~dis~n~l~~lp~wi~~~~n 265 (1081)
T KOG0618|consen 202 EVLHCERNQLSE----LEISGPSLTALYADHNPLTT-LDVHP-----------VPLNLQYLDISHNNLSNLPEWIGACAN 265 (1081)
T ss_pred hhhhhhhcccce----EEecCcchheeeeccCccee-ecccc-----------ccccceeeecchhhhhcchHHHHhccc
Confidence 4443 1111110 01112577777777776552 22222 678999999999853333467889999
Q ss_pred CcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCccccc
Q 040192 277 LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAK 355 (386)
Q Consensus 277 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~ 355 (386)
|+.+...+ +.+..++. .+...++|+.|.+..| .++-++.....+.+|+.|++.. ++|..+|.....+.
T Consensus 266 le~l~~n~-N~l~~lp~--------ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 266 LEALNANH-NRLVALPL--------RISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVL 333 (1081)
T ss_pred ceEecccc-hhHHhhHH--------HHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccchHHHhhh
Confidence 99999998 44666665 4456688999999888 7888887777789999999977 68888887655443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.7e-13 Score=136.27 Aligned_cols=230 Identities=20% Similarity=0.266 Sum_probs=168.2
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
+.+.|.+++++++.+|.. -.++|+.|++++| .+..+|...+ .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 567888888888887764 1357899999998 7888887633 58999999988 7888876543 4789999999
Q ss_pred CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL 214 (386)
Q Consensus 135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l 214 (386)
|.+..+|..+. .+|+.|++++| .+..+|.. +. .+|+.|++++|.+.... ..+
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP----------------------~~l 302 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLP----------------------AHL 302 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCc----------------------ccc
Confidence 99998887654 58999999988 55677764 32 58999999988766541 111
Q ss_pred ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhcc
Q 040192 215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSD 294 (386)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~ 294 (386)
.++|+.|++++|+... ++ .. .+++|+.|++++| .++.++.. -+++|+.|++++|. ++.++.
T Consensus 303 --p~sL~~L~Ls~N~Lt~-LP-~~-----------l~~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~- 363 (754)
T PRK15370 303 --PSGITHLNVQSNSLTA-LP-ET-----------LPPGLKTLEAGEN-ALTSLPAS-LPPELQVLDVSKNQ-ITVLPE- 363 (754)
T ss_pred --hhhHHHHHhcCCcccc-CC-cc-----------ccccceeccccCC-ccccCChh-hcCcccEEECCCCC-CCcCCh-
Confidence 2468888888875542 22 11 4578999999999 56666531 23799999999965 665543
Q ss_pred CcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcc
Q 040192 295 VPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSN 352 (386)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~ 352 (386)
...++|++|+|++| .+..+|... .++|+.|++++ ++|+.+|....
T Consensus 364 ---------~lp~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~-N~L~~LP~sl~ 408 (754)
T PRK15370 364 ---------TLPPTITTLDVSRN-ALTNLPENL--PAALQIMQASR-NNLVRLPESLP 408 (754)
T ss_pred ---------hhcCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhcc-CCcccCchhHH
Confidence 12378999999999 677776543 24799999998 57888887543
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=3.9e-13 Score=133.17 Aligned_cols=233 Identities=24% Similarity=0.211 Sum_probs=170.3
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
....+.+.++.+..+|.. .+ +|++|++++|.++.+|.. .++|+.|++++| .+..++.. ...|+.|++.+|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~-~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N-~L~~Lp~l----p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PP-ELRTLEVSGNQLTSLPVL--PPGLLELSIFSN-PLTHLPAL----PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CC-CCcEEEecCCccCcccCc--ccccceeeccCC-chhhhhhc----hhhcCEEECcCC
Confidence 356788888889888863 34 999999999999988754 468999999998 67766642 356888999999
Q ss_pred ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM 191 (386)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 191 (386)
.+..+|.. .++|+.|++++|.++.+|.. ..+|+.|++++| .+..+|. + ..+|+.|++++|.+.....
T Consensus 293 -~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~- 359 (788)
T PRK15387 293 -QLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLASLPT- 359 (788)
T ss_pred -cccccccc---ccccceeECCCCccccCCCC---cccccccccccC-ccccccc--c--ccccceEecCCCccCCCCC-
Confidence 88888753 47899999999999988753 346888889888 5566664 1 2579999999998887522
Q ss_pred CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192 192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF 270 (386)
Q Consensus 192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 270 (386)
...+|..|. ..+.+.+ .+. .+.+|+.|++++|+... ++ . ..++|+.|++++| .++.++.
T Consensus 360 -lp~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~-LP--~-----------l~s~L~~LdLS~N-~LssIP~ 419 (788)
T PRK15387 360 -LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP--V-----------LPSELKELMVSGN-RLTSLPM 419 (788)
T ss_pred -CCcccceehhhcccccc-Ccc---cccccceEEecCCcccC-CC--C-----------cccCCCEEEccCC-cCCCCCc
Confidence 234555554 2222222 111 13579999999986542 21 1 3468999999999 5776664
Q ss_pred ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192 271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
. +.+|+.|++++ +.++.++. .+..+++|+.|+|++++
T Consensus 420 l--~~~L~~L~Ls~-NqLt~LP~--------sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 L--PSGLLSLSVYR-NQLTRLPE--------SLIHLSSETTVNLEGNP 456 (788)
T ss_pred c--hhhhhhhhhcc-CcccccCh--------HHhhccCCCeEECCCCC
Confidence 3 45789999998 44787754 56778999999999984
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=5.5e-15 Score=116.17 Aligned_cols=150 Identities=30% Similarity=0.459 Sum_probs=134.6
Q ss_pred ccEEEEcCCCCCCC-CcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSET-PDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~-p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...++++.+.+..+ |.++.+. +++.|++.+|+++++|.. +.+++|+.|.+.-| .+...|.+ |+.++.|++|++..
T Consensus 35 ITrLtLSHNKl~~vppnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCceeecCCcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhhhhhccc
Confidence 45677777788777 5689999 999999999999999887 99999999999988 88888988 89999999999998
Q ss_pred Ccccc--ccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLY--SFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
+ ++. .+|..|..++.|+-|.++.|.+.-+|..++.+++|+.|.+.+| .+-.+|.+ ++.+..|++|++.+|.++..
T Consensus 112 n-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 112 N-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred c-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceeeec
Confidence 8 665 4688888899999999999999999999999999999999999 66788887 99999999999999988775
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=9.1e-15 Score=129.09 Aligned_cols=122 Identities=25% Similarity=0.358 Sum_probs=100.3
Q ss_pred CCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCC-CCCCcccH-hhhccCCCCEE
Q 040192 77 YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSN-TGIAELPK-ELNALVNLTCL 153 (386)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~-~~i~~l~~-~~~~l~~L~~L 153 (386)
.-..+++..| .++.+|+++|+.+++|+.|++++| .++.+ |.+|..+.++..|-+.+ |+|+++|. .++.+..|+.|
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 5667889999 999999999999999999999999 99988 88999998877776666 89999984 67889999999
Q ss_pred EccCCccccccchhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc
Q 040192 154 NLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC 201 (386)
Q Consensus 154 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~ 201 (386)
.+..| .+.-++..++..+++|..|.+.+|.+... .....+..++.+.
T Consensus 146 llNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 146 LLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 99888 55667777799999999999999877665 2344444454443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=1.2e-12 Score=120.00 Aligned_cols=256 Identities=20% Similarity=0.122 Sum_probs=146.9
Q ss_pred ccccccCccEEEecCCcccc-----cCCC-CCCCCCcEEecccCcCCCcCC------hhhhcCCCcCceecccCCcccc-
Q 040192 49 VRKWEKNVRRLSLMENQIEN-----LSEV-PTCPYLRTLFLNNNAPLRRID------SGFFQSMPRLNVLNLSGAIRLY- 115 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~- 115 (386)
+..+. +++.+.+.++.++. ++.. ...++++.++++++ .++..+ ...+..+++|+.|+++++ .+.
T Consensus 19 ~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~ 95 (319)
T cd00116 19 LPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGP 95 (319)
T ss_pred HHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC-CCCh
Confidence 44555 68888888888744 2222 56677888888877 443211 123556778888888887 554
Q ss_pred ccchhhcCCC---ccCEEEcCCCCCCc-----ccHhhhcc-CCCCEEEccCCcccc----ccchhhhcCCCCCcEEEEec
Q 040192 116 SFPLGISKLI---SLQHLDLSNTGIAE-----LPKELNAL-VNLTCLNLEETWRLT----VIPRRLISSFSSLHVLRIFG 182 (386)
Q Consensus 116 ~~~~~~~~l~---~L~~L~l~~~~i~~-----l~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~ 182 (386)
..+..+..+. +|+.|++++|.++. +...+..+ ++|+.|++++|.... .+.. .+..+++|++|++++
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 174 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLAN 174 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcC
Confidence 3344444444 38888888887762 22344555 788888888885432 1222 256667788888888
Q ss_pred cCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchh---cccccccccCccccccCcccEEEe
Q 040192 183 SGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELK---MDYKSVVQNTGQSFVFHSLKKFQI 259 (386)
Q Consensus 183 ~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l 259 (386)
|.+.+.. .. . ....+..+++|++|++++|....... ...+. .+++|++|++
T Consensus 175 n~l~~~~-~~---~-------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~---------~~~~L~~L~l 228 (319)
T cd00116 175 NGIGDAG-IR---A-------------LAEGLKANCNLEVLDLNNNGLTDEGASALAETLA---------SLKSLEVLNL 228 (319)
T ss_pred CCCchHH-HH---H-------------HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc---------ccCCCCEEec
Confidence 7666430 00 0 01223345688888888875532111 11111 5678888888
Q ss_pred cCCCCCCcc--ccc-c----CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccccc-----CCC
Q 040192 260 SYCKELKDL--TFL-I----FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY-----RKP 327 (386)
Q Consensus 260 ~~~~~l~~~--~~l-~----~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~ 327 (386)
++| .+++. ..+ . ..+.|++|++.+|. +++...... ...+..+++|+.++++++ .+.+.. ...
T Consensus 229 s~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l---~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~ 302 (319)
T cd00116 229 GDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDL---AEVLAEKESLLELDLRGN-KFGEEGAQLLAESL 302 (319)
T ss_pred CCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHH---HHHHhcCCCccEEECCCC-CCcHHHHHHHHHHH
Confidence 888 45542 111 1 23688888888865 432111000 013344578888888887 343221 112
Q ss_pred cCC-CCccEEeecC
Q 040192 328 LPF-PHLKEMKVIH 340 (386)
Q Consensus 328 ~~~-~~L~~L~i~~ 340 (386)
..+ +.|++++|.+
T Consensus 303 ~~~~~~~~~~~~~~ 316 (319)
T cd00116 303 LEPGNELESLWVKD 316 (319)
T ss_pred hhcCCchhhcccCC
Confidence 223 6777777755
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=5.8e-12 Score=115.39 Aligned_cols=255 Identities=20% Similarity=0.182 Sum_probs=163.2
Q ss_pred ccEEEEcCCCCCC-----CCc-ccccccCccEEEecCCcccc-------cC-CCCCCCCCcEEecccCcCCCcCChhhhc
Q 040192 33 EEHLVYAGAGLSE-----TPD-VRKWEKNVRRLSLMENQIEN-------LS-EVPTCPYLRTLFLNNNAPLRRIDSGFFQ 98 (386)
Q Consensus 33 ~~~l~~~~~~l~~-----~p~-~~~~~~~L~~L~l~~~~~~~-------~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 98 (386)
...+.+.+..+.. ++. +...+ +++++.++++.+.. ++ ....+++|+.|++++| .+.......+.
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~ 102 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGVLE 102 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHHHH
Confidence 5566666666532 222 34445 79999999887762 11 1256889999999998 55433333244
Q ss_pred CCC---cCceecccCCccccc-----cchhhcCC-CccCEEEcCCCCCC-----cccHhhhccCCCCEEEccCCccccc-
Q 040192 99 SMP---RLNVLNLSGAIRLYS-----FPLGISKL-ISLQHLDLSNTGIA-----ELPKELNALVNLTCLNLEETWRLTV- 163 (386)
Q Consensus 99 ~l~---~L~~L~l~~~~~~~~-----~~~~~~~l-~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~- 163 (386)
.+. +|++|++++| .+.. +...+..+ ++|+.|++++|.++ .++..+..+.+|+.|++++|.....
T Consensus 103 ~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 444 4999999998 6652 23345566 89999999999887 3344566778999999999954322
Q ss_pred ---cchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhccccc
Q 040192 164 ---IPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKS 240 (386)
Q Consensus 164 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 240 (386)
++.. +..+++|++|++++|.+.+.. ... ....+..+++|++|++++|.... .....+.
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-~~~----------------l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~ 242 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLTDEG-ASA----------------LAETLASLKSLEVLNLGDNNLTD-AGAAALA 242 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccChHH-HHH----------------HHHHhcccCCCCEEecCCCcCch-HHHHHHH
Confidence 2222 556689999999999876541 000 12335567899999999986543 2222221
Q ss_pred ccccCccccccCcccEEEecCCCCCCcc------ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcc-cccceee
Q 040192 241 VVQNTGQSFVFHSLKKFQISYCKELKDL------TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPF-AQFHFLC 313 (386)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ 313 (386)
..... ..+.|++|++++| .+++. ..+..+++|+.++++++. +.+......+ .....+ +.|++|+
T Consensus 243 ~~~~~----~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~---~~~~~~~~~~~~~~ 313 (319)
T cd00116 243 SALLS----PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLA---ESLLEPGNELESLW 313 (319)
T ss_pred HHHhc----cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHH---HHHhhcCCchhhcc
Confidence 10000 2479999999999 45531 234556899999999965 5544221110 133444 6888888
Q ss_pred ecccc
Q 040192 314 FSYLP 318 (386)
Q Consensus 314 l~~~~ 318 (386)
+.+.+
T Consensus 314 ~~~~~ 318 (319)
T cd00116 314 VKDDS 318 (319)
T ss_pred cCCCC
Confidence 87653
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=1.9e-11 Score=123.82 Aligned_cols=296 Identities=22% Similarity=0.289 Sum_probs=185.9
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCc--ccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQ--IENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 108 (386)
..++.+.+.....++.-...+ ++++|-+..+. +..++. +..++.|+.|++++|..+..+|.. ++.+.+||+|++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L 602 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDL 602 (889)
T ss_pred eeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhcccc
Confidence 566777777777776666666 89999999986 555555 388999999999999778889988 799999999999
Q ss_pred cCCccccccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCc-cccccchhhhcCCCCCcEEEEeccCC-
Q 040192 109 SGAIRLYSFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETW-RLTVIPRRLISSFSSLHVLRIFGSGY- 185 (386)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~- 185 (386)
+++ .+..+|..++++..|.+|++..+... .+|.....+.+|++|.+.... ..+.....-+..+.+|+.+.......
T Consensus 603 ~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~ 681 (889)
T KOG4658|consen 603 SDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL 681 (889)
T ss_pred cCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence 999 99999999999999999999987644 445556669999999886653 11111111133444444444332211
Q ss_pred --------------------------ccccCCCcCccccccc-ceeecC-----Cccccccc-cccCCcEEEeeccCCcc
Q 040192 186 --------------------------SYSDGMIGNGEFEQLC-GFRRSK-----SLDVSALA-DLKRLNRLKIAECYGLA 232 (386)
Q Consensus 186 --------------------------~~~~~~~~l~~L~~L~-~~~~~~-----~~~~~~l~-~~~~L~~L~l~~~~~~~ 232 (386)
+.......+++|+.|. ...... ........ .++++..+.+.+|....
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc
Confidence 0012233444444444 111110 00001111 14456666666666555
Q ss_pred chhcccccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccchhh-ccCcccccCCCCcccccc
Q 040192 233 ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIV-SDVPEVMMGNLNPFAQFH 310 (386)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~-~~~~~~~~~~~~~~~~L~ 310 (386)
+. .|.. ..++|+.|.+..|..++++ +....+..++.+.+.. ....... . ...+.|+++.
T Consensus 762 ~l--~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~~-------~~l~~l~~i~ 822 (889)
T KOG4658|consen 762 DL--TWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRML-------CSLGGLPQLY 822 (889)
T ss_pred cc--chhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccceee-------ecCCCCceeE
Confidence 33 3322 6899999999999888875 4455555555544433 2233331 2 2445555555
Q ss_pred eeeeccccccccccCCC----cCCCCccEEeecCc-ccCcCCCCCc
Q 040192 311 FLCFSYLPNLKSIYRKP----LPFPHLKEMKVIHC-LKLKKLPLDS 351 (386)
Q Consensus 311 ~L~l~~~~~l~~~~~~~----~~~~~L~~L~i~~c-~~L~~l~~~~ 351 (386)
.+.+..- .+.++.... ..+|.+..+.+.+| +.+..+|...
T Consensus 823 ~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 823 WLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred ecccCcc-chhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 5555544 244443332 45788888889887 8888888763
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=6.7e-13 Score=118.29 Aligned_cols=278 Identities=15% Similarity=0.166 Sum_probs=161.8
Q ss_pred CccEEEecCCcccccCCC----CCCCCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCCcccccc-ch-hhcCCCcc
Q 040192 55 NVRRLSLMENQIENLSEV----PTCPYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGAIRLYSF-PL-GISKLISL 127 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~-~~~~l~~L 127 (386)
.++.|++.|+.-....+. ..|++++.|.+.+|..+.+.. .++...|+.|+++++..|..++.. .. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 578899988854443333 789999999999986555433 234567899999999987666643 22 33568889
Q ss_pred CEEEcCCCC-CC--cccHhhhccCCCCEEEccCCccccccchhhh----cCCCCCcEEEEeccCCcccc----CCCcCcc
Q 040192 128 QHLDLSNTG-IA--ELPKELNALVNLTCLNLEETWRLTVIPRRLI----SSFSSLHVLRIFGSGYSYSD----GMIGNGE 196 (386)
Q Consensus 128 ~~L~l~~~~-i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~----~~~~l~~ 196 (386)
.+++++.+. ++ .+......+++++.+.+.+| ...+.+++ ..+..+.++++..|...... .......
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC---~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC---LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc---ccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 999998874 33 34444566777888877787 33333323 45556777776666443331 1123344
Q ss_pred ccccc--ceeecCCccccccc-cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--c-
Q 040192 197 FEQLC--GFRRSKSLDVSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--F- 270 (386)
Q Consensus 197 L~~L~--~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~- 270 (386)
|+.+. ++....+.....+. +..+|+.+.+.+|+...+......+. +++.|+.+++..|..+.+-. .
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--------n~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR--------NCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc--------CChhhhhhcccccceehhhhHhhh
Confidence 44444 22222222222222 35666667776666666555555554 56666666666665444431 1
Q ss_pred ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcccCcC
Q 040192 271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCLKLKK 346 (386)
Q Consensus 271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~ 346 (386)
...++.|+++.++.|..+++....... ....+...|+.+.+.+||.+.+-... ...+++|+.+++.+|..+.+
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~---~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLS---SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhh---hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 234566777777666666655221111 12234556666666666665543222 33466666666666655554
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.8e-11 Score=100.01 Aligned_cols=138 Identities=30% Similarity=0.370 Sum_probs=54.1
Q ss_pred CCCCCCCcccccccCccEEEecCCcccccCCCC-CCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch
Q 040192 41 AGLSETPDVRKWEKNVRRLSLMENQIENLSEVP-TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL 119 (386)
Q Consensus 41 ~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 119 (386)
..++.+|.+.... ++++|++++|.++.+...+ .+.+|+.|++++| .+..+.. +..++.|++|++++| .++.+..
T Consensus 7 ~~i~~~~~~~n~~-~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQYNNPV-KLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNN-RISSISE 81 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS----S-CH
T ss_pred ccccccccccccc-ccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCC-CCCcccc
Confidence 3445555555556 7899999999999987774 6899999999999 8887765 778999999999999 8888765
Q ss_pred hh-cCCCccCEEEcCCCCCCccc--HhhhccCCCCEEEccCCccccc--cchhhhcCCCCCcEEEEecc
Q 040192 120 GI-SKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTV--IPRRLISSFSSLHVLRIFGS 183 (386)
Q Consensus 120 ~~-~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 183 (386)
.+ ..+++|+.|++++|.+..+. ..+..+++|+.|++.+|+.... ....++..+|+|+.||-...
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 55 46899999999999887543 4567889999999999865433 22345678899998886553
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.9e-12 Score=112.13 Aligned_cols=205 Identities=22% Similarity=0.250 Sum_probs=108.1
Q ss_pred ccccCccEEEecCCcccccCC--C-CCCCCCcEEecccCcCCCcCC--hhhhcCCCcCceecccCCccccccch--hhcC
Q 040192 51 KWEKNVRRLSLMENQIENLSE--V-PTCPYLRTLFLNNNAPLRRID--SGFFQSMPRLNVLNLSGAIRLYSFPL--GISK 123 (386)
Q Consensus 51 ~~~~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~ 123 (386)
++. +|+.+++.++.+...+. . ..|++++.|+++.| .+..+. ..+...+|+|+.|+++.| ++..... .-..
T Consensus 119 n~k-kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLK-KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLL 195 (505)
T ss_pred hHH-hhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhh
Confidence 344 67777777776665442 2 66777777777776 443321 234556777777777766 5443211 1134
Q ss_pred CCccCEEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc
Q 040192 124 LISLQHLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC 201 (386)
Q Consensus 124 l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 201 (386)
+++|+.|.++.|+++ .+......+++|+.|++.+|..+...... ..-+..|+.|++++|++.....
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~----------- 263 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ----------- 263 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc-----------
Confidence 566777777777665 33334455677777777766321111111 3445567777777776665411
Q ss_pred ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc---cccCCCCCc
Q 040192 202 GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT---FLIFAPNLK 278 (386)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l~~L~ 278 (386)
......++.|+.|+++.+...+-..+..-. .+-.+.+++|+.|++..|+ +.+++ .+..+++|+
T Consensus 264 ---------~~~~~~l~~L~~Lnls~tgi~si~~~d~~s----~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 264 ---------GYKVGTLPGLNQLNLSSTGIASIAEPDVES----LDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLK 329 (505)
T ss_pred ---------ccccccccchhhhhccccCcchhcCCCccc----hhhhcccccceeeecccCc-cccccccchhhccchhh
Confidence 112233455666666655433311111100 0001156777777777773 43333 334456666
Q ss_pred EEeecC
Q 040192 279 SIEVDS 284 (386)
Q Consensus 279 ~L~l~~ 284 (386)
.|.+..
T Consensus 330 ~l~~~~ 335 (505)
T KOG3207|consen 330 HLRITL 335 (505)
T ss_pred hhhccc
Confidence 666544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=1.1e-10 Score=95.51 Aligned_cols=123 Identities=28% Similarity=0.381 Sum_probs=57.8
Q ss_pred cccEEEEcCCCCCCCCccc-ccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 32 KEEHLVYAGAGLSETPDVR-KWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
+...+.+.|..+..+..+. .+. +++.|++++|.+..++....+++|++|++++| .+..++..+...+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~-~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLD-KLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-T-T--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhc-CCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC
Confidence 4677888999998887776 466 89999999999999998899999999999999 88888766445799999999999
Q ss_pred Ccccccc--chhhcCCCccCEEEcCCCCCCccc----HhhhccCCCCEEEccC
Q 040192 111 AIRLYSF--PLGISKLISLQHLDLSNTGIAELP----KELNALVNLTCLNLEE 157 (386)
Q Consensus 111 ~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l~----~~~~~l~~L~~L~l~~ 157 (386)
| .+..+ -..+..+++|+.|++.+|+++..+ ..+..+++|+.||-..
T Consensus 98 N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 98 N-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp S----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred C-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9 88765 245678999999999999998555 3577899999998543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.1e-11 Score=109.44 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=102.9
Q ss_pred CCCCCCcEEecccCcCCCcCCh-hhhcCCCcCceecccCCcccccc---chhhcCCCccCEEEcCCCCCCcccH--hhhc
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDS-GFFQSMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDLSNTGIAELPK--ELNA 146 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l~~--~~~~ 146 (386)
.++.+|+.+.+.++ ..+..+. +....|++++.|++++| -+..+ ......+++|+.|+++.|.+..... .-..
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 55666666666665 4444432 33556777777777666 44432 2334556667777776665542211 1124
Q ss_pred cCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEee
Q 040192 147 LVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIA 226 (386)
Q Consensus 147 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~ 226 (386)
++.|+.|.++.|.....--..++..+|+|+.|++.+|..... ......-+..|+.|+++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---------------------~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---------------------KATSTKILQTLQELDLS 254 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---------------------ecchhhhhhHHhhcccc
Confidence 455666666666332221122345566666666666531111 01112223456666666
Q ss_pred ccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--------ccCCCCCcEEeecCCCccchhhccCccc
Q 040192 227 ECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--------LIFAPNLKSIEVDSCYALEEIVSDVPEV 298 (386)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------l~~l~~L~~L~l~~c~~~~~~~~~~~~~ 298 (386)
+|+.+..-.....+ .++.|+.|+++.| +++++.. ...+++|+.|++..++ +.++..-
T Consensus 255 ~N~li~~~~~~~~~---------~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl---- 319 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVG---------TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL---- 319 (505)
T ss_pred CCcccccccccccc---------cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-ccccccc----
Confidence 66555422112222 5666676766666 4544321 2345666666666633 5444332
Q ss_pred ccCCCCcccccceeeeccc
Q 040192 299 MMGNLNPFAQFHFLCFSYL 317 (386)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~~ 317 (386)
..+..+++|+.|.+-..
T Consensus 320 --~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 320 --NHLRTLENLKHLRITLN 336 (505)
T ss_pred --chhhccchhhhhhcccc
Confidence 23444555555554433
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.3e-12 Score=109.23 Aligned_cols=182 Identities=23% Similarity=0.226 Sum_probs=132.0
Q ss_pred CccCEEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC-ccccCCCcCccccccc
Q 040192 125 ISLQHLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY-SYSDGMIGNGEFEQLC 201 (386)
Q Consensus 125 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~ 201 (386)
..|+++|+++..++ .+-..+..|.+|+.|.+.+.+.-+.+... +..-.+|+.|+++++.- ++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n------------- 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTEN------------- 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccchh-------------
Confidence 35888999888776 44456678888999999888665666655 77888899999988632 222
Q ss_pred ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCC---CCccccc-cCCCCC
Q 040192 202 GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKE---LKDLTFL-IFAPNL 277 (386)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---l~~~~~l-~~l~~L 277 (386)
....-+.++..|.+|++++|....+.....+. |--++|.+|+|+||.. ..++..+ ..+|+|
T Consensus 251 -------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~--------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l 315 (419)
T KOG2120|consen 251 -------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA--------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL 315 (419)
T ss_pred -------HHHHHHHhhhhHhhcCchHhhccchhhhHHHh--------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence 01233567889999999999776654222222 1468999999999863 2234443 679999
Q ss_pred cEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccc-cccCCCcCCCCccEEeecCcc
Q 040192 278 KSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLK-SIYRKPLPFPHLKEMKVIHCL 342 (386)
Q Consensus 278 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c~ 342 (386)
.+|+|++|..++.-.. ..+-.|+.|++|.+++|..+. +-.......|+|.+|++.+|-
T Consensus 316 ~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccccccccCchHH-------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999999988887444 366778999999999998765 222356678999999998763
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=3.5e-11 Score=107.51 Aligned_cols=282 Identities=17% Similarity=0.167 Sum_probs=180.0
Q ss_pred CCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCCcccccc--chhhcCCCccCEEEcCCC-CCCc--ccHhhhccCC
Q 040192 76 PYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGAIRLYSF--PLGISKLISLQHLDLSNT-GIAE--LPKELNALVN 149 (386)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~-~i~~--l~~~~~~l~~ 149 (386)
.-|+.|.+.++....+-+ ..+...+++++.|++.+|.++++- -..-..+..|+++++..| .++. +......|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467777777775444333 233457888888888887555532 222346777888888775 3342 2223346778
Q ss_pred CCEEEccCCccccccc-hhhhcCCCCCcEEEEeccCCccc----cCCCcCccccccc--ceeecCCccccccc-cccCCc
Q 040192 150 LTCLNLEETWRLTVIP-RRLISSFSSLHVLRIFGSGYSYS----DGMIGNGEFEQLC--GFRRSKSLDVSALA-DLKRLN 221 (386)
Q Consensus 150 L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~--~~~~~~~~~~~~l~-~~~~L~ 221 (386)
|.+++++-|..+..-. .....++..++.+...||.-.+. ...+...++-.+. .+..+.+.....+. .+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888887775544311 11245566666666665533322 1112222222222 33333333322222 367889
Q ss_pred EEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--cc-cCCCCCcEEeecCCCccchhhccCccc
Q 040192 222 RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FL-IFAPNLKSIEVDSCYALEEIVSDVPEV 298 (386)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l-~~l~~L~~L~l~~c~~~~~~~~~~~~~ 298 (386)
.+..++|....+.....++. .+++|+.|.+++|...++.. .+ ..++.|+.+++..|..+.+....
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~--------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~---- 365 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQ--------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA---- 365 (483)
T ss_pred hhcccCCCCCchHHHHHHhc--------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh----
Confidence 99999998887766666655 78999999999998887753 33 45789999999999888776332
Q ss_pred ccCCCCcccccceeeeccccccccc-----cCCCcCCCCccEEeecCcccCcCCCCCccc---ccCcceEEEchHHHHhh
Q 040192 299 MMGNLNPFAQFHFLCFSYLPNLKSI-----YRKPLPFPHLKEMKVIHCLKLKKLPLDSNR---AKERKIVIRGSRERWEQ 370 (386)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~---~~~~l~i~~~~~~~~~~ 370 (386)
....++|.|++|.+++|..+.+. .....+...|+.+.+++||.+++--..... ..++++.++|..-..+.
T Consensus 366 --sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 366 --SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred --hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 35567999999999999776654 334566899999999999988874332221 22778888888655555
Q ss_pred h
Q 040192 371 L 371 (386)
Q Consensus 371 ~ 371 (386)
+
T Consensus 444 i 444 (483)
T KOG4341|consen 444 I 444 (483)
T ss_pred h
Confidence 4
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=4.7e-11 Score=110.57 Aligned_cols=194 Identities=24% Similarity=0.332 Sum_probs=143.0
Q ss_pred ccEEEEcCCCCCCCCcc---cccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192 33 EEHLVYAGAGLSETPDV---RKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~---~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 108 (386)
...+.+.+..+.+.|.- ..+. .....+++-|.+..+|.. ..|..|..+.++.| .+..++.. +..+..|.++++
T Consensus 52 sg~l~Ls~rrlk~fpr~a~~~~lt-dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~l 128 (722)
T KOG0532|consen 52 SGRLLLSGRRLKEFPRGAASYDLT-DTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDL 128 (722)
T ss_pred hcccccccchhhcCCCcccccccc-chhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhh
Confidence 44566677777666531 2233 455678888888888877 77888888888888 88888877 678999999999
Q ss_pred cCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 109 SGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
+.| .+..+|..++.|+ |+.|-+++|+++.+|..++....|..|+.+.| .+..+|.. ++.+.+|+.|.++.|.+...
T Consensus 129 s~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 129 SSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred ccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhhC
Confidence 998 8888888888887 89999999999999988888888999999998 66777776 88999999999988877665
Q ss_pred cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192 189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL 268 (386)
Q Consensus 189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 268 (386)
+..+..+ .|..|++++|+... ++..+. .+..|+.|-|.+|+ +..+
T Consensus 205 ----------------------p~El~~L-pLi~lDfScNkis~-iPv~fr----------~m~~Lq~l~LenNP-LqSP 249 (722)
T KOG0532|consen 205 ----------------------PEELCSL-PLIRLDFSCNKISY-LPVDFR----------KMRHLQVLQLENNP-LQSP 249 (722)
T ss_pred ----------------------CHHHhCC-ceeeeecccCceee-cchhhh----------hhhhheeeeeccCC-CCCC
Confidence 1222222 36666666665543 444443 56666666666664 4443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=2.1e-09 Score=101.56 Aligned_cols=189 Identities=26% Similarity=0.355 Sum_probs=103.3
Q ss_pred EEecCCcc-cccCCCCCCCCCcEEecccCcCCCcCChhhhcCCC-cCceecccCCccccccchhhcCCCccCEEEcCCCC
Q 040192 59 LSLMENQI-ENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMP-RLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG 136 (386)
Q Consensus 59 L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 136 (386)
+....+.+ .........+.++.|++.++ .+.++++. ..... +|+.|+++++ .+..+|..++.+++|+.|++++|.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 44444444 22223344456666666666 55555554 33342 6666666666 666655555666666666666666
Q ss_pred CCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccccc
Q 040192 137 IAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALAD 216 (386)
Q Consensus 137 i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~ 216 (386)
++.+|...+..++|+.|+++++ .+..+|.. +.....|+.|.+..|..... +..+..
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~~~----------------------~~~~~~ 230 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNSIIEL----------------------LSSLSN 230 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCcceec----------------------chhhhh
Confidence 6666655545666666666666 55566653 34444566666666532221 222333
Q ss_pred ccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192 217 LKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~ 286 (386)
+.++..+.+.+++.... ..... .+++++.|++++| .+++++.++.+.+|+.|++++..
T Consensus 231 ~~~l~~l~l~~n~~~~~--~~~~~---------~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 231 LKNLSGLELSNNKLEDL--PESIG---------NLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccccccCCceeeec--cchhc---------cccccceeccccc-cccccccccccCccCEEeccCcc
Confidence 44555555444443321 22222 4566777777776 46666556666777777776643
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-10 Score=100.06 Aligned_cols=199 Identities=19% Similarity=0.134 Sum_probs=137.3
Q ss_pred CcCceecccCCccccc--cchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccch-hhhcCCCCCc
Q 040192 101 PRLNVLNLSGAIRLYS--FPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIPR-RLISSFSSLH 176 (386)
Q Consensus 101 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~ 176 (386)
..|++||++.. .++. +...+..|..|+.|++.++.+. .+-..++.-.+|+.++++.|..++.... -++.+|+.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35888999877 6653 3345578889999999998877 4445677788999999999966655443 2467899999
Q ss_pred EEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc-cchhcccccccccCccccccCccc
Q 040192 177 VLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL-AELKMDYKSVVQNTGQSFVFHSLK 255 (386)
Q Consensus 177 ~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~ 255 (386)
.|+++.|.......- .....+ -++|..|+++++... .........+ .+|+|.
T Consensus 264 ~LNlsWc~l~~~~Vt-----------------v~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~--------rcp~l~ 316 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT-----------------VAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVR--------RCPNLV 316 (419)
T ss_pred hcCchHhhccchhhh-----------------HHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHH--------hCCcee
Confidence 999999977665100 001222 258899999887432 1112233322 799999
Q ss_pred EEEecCCCCCCc--cccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCc
Q 040192 256 KFQISYCKELKD--LTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHL 333 (386)
Q Consensus 256 ~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 333 (386)
+|+++.|..+++ +..+-.++.|++|.++.|..+.--.. .-+...|+|.+|++.+|-.-+........+|+|
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~-------~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~l 389 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL-------LELNSKPSLVYLDVFGCVSDTTMELLKEMLSHL 389 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe-------eeeccCcceEEEEeccccCchHHHHHHHhCccc
Confidence 999999988876 23466789999999999987765443 356788999999999985433332223334444
Q ss_pred c
Q 040192 334 K 334 (386)
Q Consensus 334 ~ 334 (386)
+
T Consensus 390 k 390 (419)
T KOG2120|consen 390 K 390 (419)
T ss_pred c
Confidence 3
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=7.4e-09 Score=97.78 Aligned_cols=192 Identities=22% Similarity=0.313 Sum_probs=145.6
Q ss_pred EEEcCCCC-CCCCcccccccCccEEEecCCcccccCCC-CCCC-CCcEEecccCcCCCcCChhhhcCCCcCceecccCCc
Q 040192 36 LVYAGAGL-SETPDVRKWEKNVRRLSLMENQIENLSEV-PTCP-YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112 (386)
Q Consensus 36 l~~~~~~l-~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (386)
+...+... .....+..+. .++.+.+.++.+..++.. .... +|+.|+++.| .+..++.. ++.++.|+.|++..|
T Consensus 98 l~~~~~~~~~~~~~~~~~~-~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N- 173 (394)
T COG4886 98 LDLNLNRLRSNISELLELT-NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeccccccccCchhhhccc-ceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCc-
Confidence 34444444 3334455556 799999999999999888 4553 9999999999 88887644 789999999999999
Q ss_pred cccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCC
Q 040192 113 RLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMI 192 (386)
Q Consensus 113 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 192 (386)
.+..+|...+..+.|+.|++++|.++.+|..+.....|+++.+++|+.+..... +..+.++..+.+..+.+...
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~---- 247 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDL---- 247 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeec----
Confidence 999998877789999999999999999998877778899999999954444333 78888888888777766552
Q ss_pred cCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192 193 GNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD 267 (386)
Q Consensus 193 ~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 267 (386)
+..+..+++++.|++++|.... +.. ++ ...+++.|+++++.....
T Consensus 248 ------------------~~~~~~l~~l~~L~~s~n~i~~-i~~--~~---------~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 ------------------PESIGNLSNLETLDLSNNQISS-ISS--LG---------SLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ------------------cchhccccccceeccccccccc-ccc--cc---------ccCccCEEeccCcccccc
Confidence 2334556778888888886654 222 32 678888888888754433
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.2e-09 Score=93.98 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=97.8
Q ss_pred CCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeec
Q 040192 148 VNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAE 227 (386)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~ 227 (386)
..|++++++.| .+..+..+ ..-++.++.|+++.|.+... ..++.+++|..|++++
T Consensus 284 q~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~~v-----------------------~nLa~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIRTV-----------------------QNLAELPQLQLLDLSG 338 (490)
T ss_pred hhhhhcccccc-chhhhhhh-hhhccceeEEeccccceeee-----------------------hhhhhcccceEeeccc
Confidence 45777888887 56666654 67778888888888877665 3466678999999999
Q ss_pred cCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCccc
Q 040192 228 CYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFA 307 (386)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~ 307 (386)
|...+. ..|-. .+.+++.|++++| .+++++.++.+-+|..|++++ ++|+.+..- ..++.+|
T Consensus 339 N~Ls~~--~Gwh~---------KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV------~~IG~LP 399 (490)
T KOG1259|consen 339 NLLAEC--VGWHL---------KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSS-NQIEELDEV------NHIGNLP 399 (490)
T ss_pred chhHhh--hhhHh---------hhcCEeeeehhhh-hHhhhhhhHhhhhheeccccc-cchhhHHHh------ccccccc
Confidence 865542 23322 6889999999999 688888888889999999998 558777553 5788899
Q ss_pred ccceeeecccc
Q 040192 308 QFHFLCFSYLP 318 (386)
Q Consensus 308 ~L~~L~l~~~~ 318 (386)
-|+.+.+.++|
T Consensus 400 CLE~l~L~~NP 410 (490)
T KOG1259|consen 400 CLETLRLTGNP 410 (490)
T ss_pred HHHHHhhcCCC
Confidence 99999999886
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=2.9e-10 Score=105.47 Aligned_cols=212 Identities=19% Similarity=0.196 Sum_probs=161.3
Q ss_pred EEecCCcccccCCC---CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCC
Q 040192 59 LSLMENQIENLSEV---PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNT 135 (386)
Q Consensus 59 L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 135 (386)
|.+++-.+..+|-. ..+..-...+++.| .+..+|.. +..+..|+.+.+..| .+..+|..++++..|.+++++.|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccc-ccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence 55666666665544 44555566888888 88888877 678889999999998 89999999999999999999999
Q ss_pred CCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccc
Q 040192 136 GIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALA 215 (386)
Q Consensus 136 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~ 215 (386)
+++.+|..+..++ |+.|-+++| .++.+|.. ++....|..|+.+.|.+... +..+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~sl----------------------psql~ 186 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQSL----------------------PSQLG 186 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhhc----------------------hHHhh
Confidence 9999998888776 889999988 77889987 88889999999999877665 34456
Q ss_pred cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCCccchhhcc
Q 040192 216 DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEEIVSD 294 (386)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~~~~~ 294 (386)
.+.+|+.|.+..|.... ++.+. ..=.|.+|+++.| ++..+| .+..++.|++|.|.+++ +++-+.+
T Consensus 187 ~l~slr~l~vrRn~l~~-lp~El-----------~~LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP-LqSPPAq 252 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLED-LPEEL-----------CSLPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP-LQSPPAQ 252 (722)
T ss_pred hHHHHHHHHHhhhhhhh-CCHHH-----------hCCceeeeecccC-ceeecchhhhhhhhheeeeeccCC-CCCChHH
Confidence 67788888888875543 54444 3457889999988 566655 47889999999999866 7665543
Q ss_pred CcccccCCCCcccccceeeeccc
Q 040192 295 VPEVMMGNLNPFAQFHFLCFSYL 317 (386)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~l~~~ 317 (386)
. +.-+...-.|+|++..|
T Consensus 253 I-----C~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 253 I-----CEKGKVHIFKYLSTQAC 270 (722)
T ss_pred H-----Hhccceeeeeeecchhc
Confidence 1 12223344667777666
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=3.7e-09 Score=90.95 Aligned_cols=131 Identities=19% Similarity=0.299 Sum_probs=74.3
Q ss_pred ccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCc-ccc--ccchhhcCC
Q 040192 49 VRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI-RLY--SFPLGISKL 124 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~l 124 (386)
+..+. ++..+.++.++-..+-.. ..-|.|+++.+... .+...+. +-.+.. .-+..+.. ... .....+-..
T Consensus 210 l~~f~-~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s-~~~~~~~--l~pe~~--~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 210 LNAFR-NLKTLKFSALSTENIVDIELLKPTLQTICVHNT-TIQDVPS--LLPETI--LADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred hHHhh-hhheeeeeccchhheeceeecCchhheeeeecc-ccccccc--ccchhh--hcCccCCCCCccCCceEEecchH
Confidence 55566 888888888866655444 55667888877664 3332221 111111 11111110 000 111112233
Q ss_pred CccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 125 ISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 125 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
..|..+|+++|.|+.+.+.+.-.+.++.|+++.| .+..+.. +..+++|.+|++++|.++..
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhh
Confidence 5567777777777777666666777777777777 4444544 67777777777777766554
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.75 E-value=2e-09 Score=94.29 Aligned_cols=237 Identities=16% Similarity=0.147 Sum_probs=124.4
Q ss_pred ccccccCccEEEecCCcccc-----cCC-CCCCCCCcEEecccCcCCC----cCCh------hhhcCCCcCceecccCCc
Q 040192 49 VRKWEKNVRRLSLMENQIEN-----LSE-VPTCPYLRTLFLNNNAPLR----RIDS------GFFQSMPRLNVLNLSGAI 112 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~----~~~~------~~~~~l~~L~~L~l~~~~ 112 (386)
..... .++.+++++|.+.. +.. ...-+.|+..+++.. ..+ .+|. ..+..+++|++++|+.|
T Consensus 26 ~~~~~-s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN- 102 (382)
T KOG1909|consen 26 LEPMD-SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN- 102 (382)
T ss_pred hcccC-ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-
Confidence 34445 67778888877664 111 145557777776654 222 1221 11344566666666666
Q ss_pred ccc-ccc----hhhcCCCccCEEEcCCCCCCcc--------------cHhhhccCCCCEEEccCCccccccch----hhh
Q 040192 113 RLY-SFP----LGISKLISLQHLDLSNTGIAEL--------------PKELNALVNLTCLNLEETWRLTVIPR----RLI 169 (386)
Q Consensus 113 ~~~-~~~----~~~~~l~~L~~L~l~~~~i~~l--------------~~~~~~l~~L~~L~l~~~~~~~~~~~----~~l 169 (386)
-++ ..+ .-+..+..|++|.+.+|.+... ...++.-++|+.+....| .+.+.+. .++
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAF 181 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHH
Confidence 444 112 2234456666666666655311 112234455666666555 3333221 124
Q ss_pred cCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcccc
Q 040192 170 SSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSF 249 (386)
Q Consensus 170 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (386)
...+.|+.++++.|.+...+.. .....+..+++|+.|++.+|.....-...... .-+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~-----------------al~eal~~~~~LevLdl~DNtft~egs~~Lak--aL~---- 238 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVT-----------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAK--ALS---- 238 (382)
T ss_pred HhccccceEEEecccccCchhH-----------------HHHHHHHhCCcceeeecccchhhhHHHHHHHH--Hhc----
Confidence 4556666666666555443110 01345667788888888887655432111110 111
Q ss_pred ccCcccEEEecCCCCCCccc-------cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192 250 VFHSLKKFQISYCKELKDLT-------FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL 317 (386)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~-------~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (386)
..++|+.|+++.| .+++-. .....|.|++|.+.+|. ++.-...... ......|.|+.|+|++|
T Consensus 239 s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la---~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 239 SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALA---ACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHH---HHHhcchhhHHhcCCcc
Confidence 5677888888888 455421 12347888888888855 4432221100 13334678888888887
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=2.9e-08 Score=85.45 Aligned_cols=212 Identities=19% Similarity=0.154 Sum_probs=125.9
Q ss_pred CcEEecccCcCCCcCCh--hhhcCCCcCceecccCCcccccc---chhhcCCCccCEEEcCCCCCCcccHhh-hccCCCC
Q 040192 78 LRTLFLNNNAPLRRIDS--GFFQSMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDLSNTGIAELPKEL-NALVNLT 151 (386)
Q Consensus 78 L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l~~~~-~~l~~L~ 151 (386)
+..+-+.++ .+..... .+...+..++.+++.+| .++.. ...+.++|+|++|+++.|.+....... ....+|+
T Consensus 47 ~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 334455555 5544432 22346788889999888 77754 334578899999999998776433222 3567888
Q ss_pred EEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc
Q 040192 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL 231 (386)
Q Consensus 152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 231 (386)
.|-+.+...-..-..+.+..++.+++|+++.|.....- +++...+.+ -+-++++....|...
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n----------------~Dd~c~e~~--s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN----------------LDDNCIEDW--STEVLTLHQLPCLEQ 186 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhc----------------ccccccccc--chhhhhhhcCCcHHH
Confidence 88888875433322334677888888888887443320 000000111 123455555555333
Q ss_pred cchhcccccccccCccccccCcccEEEecCCCCCCccc---cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccc
Q 040192 232 AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT---FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQ 308 (386)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~ 308 (386)
.........+ .+|++..+-+..|+ +++.. ....+|.+-.|.|.. +++.++..- ..+.+||.
T Consensus 187 ~w~~~~~l~r--------~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasv------D~Ln~f~~ 250 (418)
T KOG2982|consen 187 LWLNKNKLSR--------IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV------DALNGFPQ 250 (418)
T ss_pred HHHHHHhHHh--------hcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHH------HHHcCCch
Confidence 2222222222 57888888888885 44433 234567777777776 457766543 36777888
Q ss_pred cceeeeccccccccccC
Q 040192 309 FHFLCFSYLPNLKSIYR 325 (386)
Q Consensus 309 L~~L~l~~~~~l~~~~~ 325 (386)
|..|.+++.|-++.+..
T Consensus 251 l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 251 LVDLRVSENPLSDPLRG 267 (418)
T ss_pred hheeeccCCcccccccC
Confidence 88888888876665543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=7.2e-08 Score=64.73 Aligned_cols=58 Identities=41% Similarity=0.553 Sum_probs=32.7
Q ss_pred CCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCC
Q 040192 77 YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTG 136 (386)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 136 (386)
+|++|++++| .+..++...|.++++|++|++++| .+..++ ..|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555 555555555556666666666655 555543 345555666666655554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=3.2e-07 Score=61.56 Aligned_cols=58 Identities=34% Similarity=0.556 Sum_probs=30.1
Q ss_pred ccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccC
Q 040192 126 SLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSG 184 (386)
Q Consensus 126 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 184 (386)
+|+.|++++|.++.+|. .+..+++|+.|++++| .+..++..++..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555542 3445555555555555 3344444445555555555555553
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=4.5e-08 Score=86.03 Aligned_cols=227 Identities=15% Similarity=0.148 Sum_probs=150.3
Q ss_pred ccEEEEcCCCCCCC------CcccccccCccEEEecCCccc----ccCC--------CCCCCCCcEEecccCcCCCcCC-
Q 040192 33 EEHLVYAGAGLSET------PDVRKWEKNVRRLSLMENQIE----NLSE--------VPTCPYLRTLFLNNNAPLRRID- 93 (386)
Q Consensus 33 ~~~l~~~~~~l~~~------p~~~~~~~~L~~L~l~~~~~~----~~~~--------~~~~~~L~~L~l~~~~~~~~~~- 93 (386)
..-+.++|+.+..= +.+++.+ +|+..+++...-. .+|. ...+++|++|+++.|......+
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 45566777766421 3466666 7888888754211 1222 2678899999999994333333
Q ss_pred --hhhhcCCCcCceecccCCccccccc--------------hhhcCCCccCEEEcCCCCCCccc-----HhhhccCCCCE
Q 040192 94 --SGFFQSMPRLNVLNLSGAIRLYSFP--------------LGISKLISLQHLDLSNTGIAELP-----KELNALVNLTC 152 (386)
Q Consensus 94 --~~~~~~l~~L~~L~l~~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~i~~l~-----~~~~~l~~L~~ 152 (386)
..++..+..|+.|.+.+| .++... .....-+.|+++..++|++..-+ ..+...+.|+.
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 234677999999999988 766321 11234478999999999886443 45667789999
Q ss_pred EEccCCccccc---cchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccC
Q 040192 153 LNLEETWRLTV---IPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECY 229 (386)
Q Consensus 153 L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 229 (386)
+.++.|.+-.. +-...+.++++|++|++++|.++..++... ...+..+++|+.|++++|.
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L-----------------akaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL-----------------AKALSSWPHLRELNLGDCL 252 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-----------------HHHhcccchheeecccccc
Confidence 99998843211 112237899999999999998887632221 2345567889999999985
Q ss_pred Cccch---hcccccccccCccccccCcccEEEecCCCCCCc-c-----ccccCCCCCcEEeecCCCc
Q 040192 230 GLAEL---KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD-L-----TFLIFAPNLKSIEVDSCYA 287 (386)
Q Consensus 230 ~~~~~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~-----~~l~~l~~L~~L~l~~c~~ 287 (386)
.-+.- ....+.. ..|+|+.|.+.+|. ++. - ..+...|.|+.|+|.+|..
T Consensus 253 l~~~Ga~a~~~al~~--------~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKE--------SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhc--------cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 54321 1122222 67899999999994 443 1 2244578999999999663
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=1.9e-06 Score=85.79 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=54.8
Q ss_pred CcEEecccCcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEc
Q 040192 78 LRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNL 155 (386)
Q Consensus 78 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l 155 (386)
++.|++++|...+.+|.. +..+++|+.|++++| .+. .+|..++.+++|+.|++++|.++ .+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 445555555222334443 455666666666665 443 44555556666666666666555 45555556666666666
Q ss_pred cCCccccccchhhhcC-CCCCcEEEEecc
Q 040192 156 EETWRLTVIPRRLISS-FSSLHVLRIFGS 183 (386)
Q Consensus 156 ~~~~~~~~~~~~~l~~-l~~L~~L~l~~~ 183 (386)
++|.....+|.. ++. ..++..+++.+|
T Consensus 498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChH-HhhccccCceEEecCC
Confidence 666554555554 322 234445555544
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=3.1e-07 Score=79.23 Aligned_cols=206 Identities=23% Similarity=0.230 Sum_probs=136.2
Q ss_pred cCCCccCEEEcCCCCCC---cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccc
Q 040192 122 SKLISLQHLDLSNTGIA---ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFE 198 (386)
Q Consensus 122 ~~l~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 198 (386)
..+++++.+|+..|.++ ++-..+.+++.|++|+++.|.....+... -....+|+.|-+.++.+.....-.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s------ 140 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTS------ 140 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhhhhh------
Confidence 46789999999999887 45566778999999999999654444431 134568999999998777662222
Q ss_pred cccceeecCCccccccccccCCcEEEeeccCCccc-hhcccccccccCccccccCcccEEEecCCCCCCccc---cccCC
Q 040192 199 QLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAE-LKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT---FLIFA 274 (386)
Q Consensus 199 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~l~~l 274 (386)
.+..+|+++.|.++.|....- ........ .-+.+.+|+...|.-..... ....|
T Consensus 141 --------------~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--------~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 141 --------------SLDDLPKVTELHMSDNSLRQLNLDDNCIED--------WSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred --------------hhhcchhhhhhhhccchhhhhccccccccc--------cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 233456666666665521100 00111110 34678888888885322211 12458
Q ss_pred CCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC--CCcCCCCccEEeecCcccCcCCCCCcc
Q 040192 275 PNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR--KPLPFPHLKEMKVIHCLKLKKLPLDSN 352 (386)
Q Consensus 275 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~i~~c~~L~~l~~~~~ 352 (386)
|++..+.+..|+ +++...+ .....+|.+--|+++.. ++.+|.. +...|+.|.-|.+.+.|-+..+.-+..
T Consensus 199 pnv~sv~v~e~P-lK~~s~e------k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 199 PNVNSVFVCEGP-LKTESSE------KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred ccchheeeecCc-ccchhhc------ccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcc
Confidence 999999999988 6665554 36677888889999887 6666543 567799999999999888877765543
Q ss_pred ccc-----CcceEEEch
Q 040192 353 RAK-----ERKIVIRGS 364 (386)
Q Consensus 353 ~~~-----~~l~i~~~~ 364 (386)
... .++++....
T Consensus 271 r~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 271 RFLLIARLTKVQVLNGS 287 (418)
T ss_pred eEEEEeeccceEEecCc
Confidence 322 555555544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.5e-07 Score=89.27 Aligned_cols=130 Identities=28% Similarity=0.423 Sum_probs=86.4
Q ss_pred CccEEEecCCccccc-CCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 133 (386)
.+..+.+..|.+..+ .....+.+|+.|++..| .+..+... +..+++|++|++++| .++.+. .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheec
Confidence 566666777766663 33477777888888777 66655543 456778888888877 777653 35566668888888
Q ss_pred CCCCCcccHhhhccCCCCEEEccCCccccccch-hhhcCCCCCcEEEEeccCCccccCC
Q 040192 134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSGYSYSDGM 191 (386)
Q Consensus 134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~ 191 (386)
+|.++.+. .+..+++|+.+++++| .+..+.. . ...+.+++.+++.++.+......
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccch
Confidence 88777664 3445777788888877 4444444 2 36677777778877776665333
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=3.6e-06 Score=83.79 Aligned_cols=109 Identities=23% Similarity=0.348 Sum_probs=88.6
Q ss_pred CccEEEecCCcccc-cCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEE
Q 040192 55 NVRRLSLMENQIEN-LSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLD 131 (386)
Q Consensus 55 ~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~ 131 (386)
.++.|+++++.+.+ +|.. ..+++|+.|++++|...+.+|.. ++.+++|+.|++++| .+. .+|..++++++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEE
Confidence 37889999999987 5555 88999999999999433467766 799999999999999 665 6788999999999999
Q ss_pred cCCCCCC-cccHhhhcc-CCCCEEEccCCccccccc
Q 040192 132 LSNTGIA-ELPKELNAL-VNLTCLNLEETWRLTVIP 165 (386)
Q Consensus 132 l~~~~i~-~l~~~~~~l-~~L~~L~l~~~~~~~~~~ 165 (386)
+++|.++ .+|..++.. .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999987 788777653 467788888885544433
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=1.7e-07 Score=88.94 Aligned_cols=193 Identities=21% Similarity=0.210 Sum_probs=98.4
Q ss_pred CCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEE
Q 040192 75 CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLN 154 (386)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 154 (386)
+..+..+.+..+ .+..+... ...+..|+.+++.++ .+..+...+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchh-hhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 344444444444 33331111 345555555555555 55544333445555555555555555442 234444455555
Q ss_pred ccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccch
Q 040192 155 LEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAEL 234 (386)
Q Consensus 155 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 234 (386)
+.+| .+..+.. +..+.+|+.+++.+|.+...... . +..+.+++.+.+.++....
T Consensus 147 l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~--------------------~-~~~~~~l~~l~l~~n~i~~-- 200 (414)
T KOG0531|consen 147 LSGN-LISDISG--LESLKSLKLLDLSYNRIVDIEND--------------------E-LSELISLEELDLGGNSIRE-- 200 (414)
T ss_pred eccC-cchhccC--CccchhhhcccCCcchhhhhhhh--------------------h-hhhccchHHHhccCCchhc--
Confidence 5555 3444443 44455555555555544443100 1 3445677777777775543
Q ss_pred hcccccccccCccccccCcccEEEecCCCCCCccccccCCCC--CcEEeecCCCccchhhccCcccccCCCCccccccee
Q 040192 235 KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPN--LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFL 312 (386)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~--L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L 312 (386)
..+.. ....+..+++..+ .++.+..+..++. |+.+++.+.. +..... .+..+..++.|
T Consensus 201 -i~~~~---------~~~~l~~~~l~~n-~i~~~~~l~~~~~~~L~~l~l~~n~-i~~~~~--------~~~~~~~l~~l 260 (414)
T KOG0531|consen 201 -IEGLD---------LLKKLVLLSLLDN-KISKLEGLNELVMLHLRELYLSGNR-ISRSPE--------GLENLKNLPVL 260 (414)
T ss_pred -ccchH---------HHHHHHHhhcccc-cceeccCcccchhHHHHHHhcccCc-cccccc--------ccccccccccc
Confidence 22222 3444545556655 3444444444444 7788888744 554421 44566777777
Q ss_pred eeccc
Q 040192 313 CFSYL 317 (386)
Q Consensus 313 ~l~~~ 317 (386)
++.+.
T Consensus 261 ~~~~n 265 (414)
T KOG0531|consen 261 DLSSN 265 (414)
T ss_pred chhhc
Confidence 77765
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=6.7e-07 Score=68.38 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=86.6
Q ss_pred CccEEEecCCcccccCCC----CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEE
Q 040192 55 NVRRLSLMENQIENLSEV----PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHL 130 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 130 (386)
.+..+++++|++..++.. .+..+|+..++++| .++++|+.+-..++-++.+++++| .+.++|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 456677777776654333 67778888889988 888888886667788899999988 888998888899999999
Q ss_pred EcCCCCCCcccHhhhccCCCCEEEccCCccccccch
Q 040192 131 DLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPR 166 (386)
Q Consensus 131 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 166 (386)
++++|.+...|..+..+.++..|+..++ -...++.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~ 140 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDV 140 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence 9999999988888888888888888877 3445554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.2e-07 Score=90.96 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=57.9
Q ss_pred cCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192 102 RLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF 181 (386)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 181 (386)
.|.+.+.+.| .+..+-..+.-++.++.|++++|+++.+. .+..|+.|++|++++| .++.+|.-.... +.|..|.++
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~g-c~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVG-CKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhh-hhheeeeec
Confidence 4455555555 55544445566678888888888887664 6777888888888888 556666521223 348888888
Q ss_pred ccCCccccCCCcC
Q 040192 182 GSGYSYSDGMIGN 194 (386)
Q Consensus 182 ~~~~~~~~~~~~l 194 (386)
+|.++...++..+
T Consensus 241 nN~l~tL~gie~L 253 (1096)
T KOG1859|consen 241 NNALTTLRGIENL 253 (1096)
T ss_pred ccHHHhhhhHHhh
Confidence 8877665333333
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.97 E-value=1.5e-06 Score=84.31 Aligned_cols=115 Identities=26% Similarity=0.297 Sum_probs=74.8
Q ss_pred CCCCCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCC-cccccc----chhhcCCCccCEEEcCCCC-CCc--ccHh
Q 040192 73 PTCPYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGA-IRLYSF----PLGISKLISLQHLDLSNTG-IAE--LPKE 143 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-i~~--l~~~ 143 (386)
..+++|+.+.+.++..+.+.. ..+...+++|+.|++.++ ...... ......+.+|+.|+++.+. ++. +...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 457888888888876555533 233668899999998762 122211 1223456888899998887 552 2222
Q ss_pred hhccCCCCEEEccCCccccccc-hhhhcCCCCCcEEEEeccCCcc
Q 040192 144 LNALVNLTCLNLEETWRLTVIP-RRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 144 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
...|++|+.|.+..|..+++.. ..+...+++|++|+++++....
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 2348899999988885443322 2335678889999999876653
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.97 E-value=1.2e-06 Score=84.99 Aligned_cols=137 Identities=23% Similarity=0.225 Sum_probs=73.2
Q ss_pred cCCCcCceecccCCccccc--cchhhcCCCccCEEEcCCC--CCCcc----cHhhhccCCCCEEEccCCccccccchhhh
Q 040192 98 QSMPRLNVLNLSGAIRLYS--FPLGISKLISLQHLDLSNT--GIAEL----PKELNALVNLTCLNLEETWRLTVIPRRLI 169 (386)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~--~i~~l----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 169 (386)
..++.|+.+.+.++..+.. +-.....+++|+.|+++++ .+... ......+.+|+.++++.+..+.+..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3467777777766644443 2234456677777777652 11111 12334556777777777654444332223
Q ss_pred c-CCCCCcEEEEeccC-CccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcc
Q 040192 170 S-SFSSLHVLRIFGSG-YSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQ 247 (386)
Q Consensus 170 ~-~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 247 (386)
. .+++|+.|.+..+. +++. + .......+++|++|++++|..+.+........
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~-g-------------------l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~------ 318 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDE-G-------------------LVSIAERCPSLRELDLSGCHGLTDSGLEALLK------ 318 (482)
T ss_pred HhhCCCcceEccCCCCccchh-H-------------------HHHHHHhcCcccEEeeecCccchHHHHHHHHH------
Confidence 2 36677777766554 2322 0 11223346778888888887765433333222
Q ss_pred ccccCcccEEEecCC
Q 040192 248 SFVFHSLKKFQISYC 262 (386)
Q Consensus 248 ~~~~~~L~~L~l~~~ 262 (386)
.+++|+.|.+..+
T Consensus 319 --~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 319 --NCPNLRELKLLSL 331 (482)
T ss_pred --hCcchhhhhhhhc
Confidence 5666666554443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=7.2e-05 Score=69.11 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=17.0
Q ss_pred cCcccEEEecCCCCCCccccccCCCCCcEEeecC
Q 040192 251 FHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDS 284 (386)
Q Consensus 251 ~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~ 284 (386)
+++|+.|.+++|..+..++. -..+|+.|+++.
T Consensus 155 PsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~ 186 (426)
T PRK15386 155 SPSLKTLSLTGCSNIILPEK--LPESLQSITLHI 186 (426)
T ss_pred CCcccEEEecCCCcccCccc--ccccCcEEEecc
Confidence 45677777776653321111 124666666655
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=6.8e-05 Score=69.27 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=7.3
Q ss_pred cCCcEEEeeccCC
Q 040192 218 KRLNRLKIAECYG 230 (386)
Q Consensus 218 ~~L~~L~l~~~~~ 230 (386)
++|+.|.+++|..
T Consensus 156 sSLk~L~Is~c~~ 168 (426)
T PRK15386 156 PSLKTLSLTGCSN 168 (426)
T ss_pred CcccEEEecCCCc
Confidence 4566666665543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.9e-05 Score=64.64 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=61.4
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc--hhhcCCCccCEEEc
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP--LGISKLISLQHLDL 132 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l 132 (386)
+...+++++|++..++.+..++.|.+|.+.+| .+..+.+.+...+++|..|.+.+| .+.++. ..+..|+.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 45566777777776666677777777777777 666666665555666777777766 555441 23455666666666
Q ss_pred CCCCCCcccH----hhhccCCCCEEEccC
Q 040192 133 SNTGIAELPK----ELNALVNLTCLNLEE 157 (386)
Q Consensus 133 ~~~~i~~l~~----~~~~l~~L~~L~l~~ 157 (386)
-+|.++.-.. .+..+++|+.|++..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666553321 234455555555544
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=2.1e-07 Score=89.28 Aligned_cols=125 Identities=27% Similarity=0.308 Sum_probs=77.2
Q ss_pred CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 133 (386)
.|...++++|.+..++.. .-++.|+.|++++| .+.+.. .+..|++|++||++.| .+..+|..--.-.+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeec
Confidence 455556666666655544 66777777777777 444443 2667777777777777 666665322111237777777
Q ss_pred CCCCCcccHhhhccCCCCEEEccCCcccccc-chhhhcCCCCCcEEEEeccCC
Q 040192 134 NTGIAELPKELNALVNLTCLNLEETWRLTVI-PRRLISSFSSLHVLRIFGSGY 185 (386)
Q Consensus 134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 185 (386)
+|.++.+ ..+.++.+|+.|++++| .+... .-..++.+..|+.|++.||++
T Consensus 241 nN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7777666 35667777777777777 33222 122256667777777777654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=2.4e-05 Score=48.18 Aligned_cols=33 Identities=52% Similarity=0.752 Sum_probs=17.4
Q ss_pred ccCEEEcCCCCCCcccHhhhccCCCCEEEccCC
Q 040192 126 SLQHLDLSNTGIAELPKELNALVNLTCLNLEET 158 (386)
Q Consensus 126 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~ 158 (386)
+|++|++++|.++.+|..++.+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555554555555555555555
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.6e-05 Score=49.02 Aligned_cols=40 Identities=33% Similarity=0.536 Sum_probs=26.9
Q ss_pred CcCceecccCCccccccchhhcCCCccCEEEcCCCCCCccc
Q 040192 101 PRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELP 141 (386)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~ 141 (386)
++|++|++++| .+..+|+.++++++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35677777777 77777666777777777777777776654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=1.1e-05 Score=80.36 Aligned_cols=131 Identities=22% Similarity=0.267 Sum_probs=60.8
Q ss_pred CccEEEecCCccc-c-cCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEE
Q 040192 55 NVRRLSLMENQIE-N-LSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHL 130 (386)
Q Consensus 55 ~L~~L~l~~~~~~-~-~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 130 (386)
+|++|+++|...- . ++.. ..+|.|++|.+.+-....+--......+++|..||++++ .++.+ .+++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHH
Confidence 4555555554211 1 2222 445666666655542111111122445566666666665 55554 455556666666
Q ss_pred EcCCCCCCccc--HhhhccCCCCEEEccCCcccccc--ch---hhhcCCCCCcEEEEeccCCcc
Q 040192 131 DLSNTGIAELP--KELNALVNLTCLNLEETWRLTVI--PR---RLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 131 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~--~~---~~l~~l~~L~~L~l~~~~~~~ 187 (386)
.+.+-.+..-. ..+..+++|+.||+|..+....- .. +.-..+|+|+.|+.+++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 55554443221 23445666666666554322111 00 011335566666666554443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.9e-05 Score=78.81 Aligned_cols=106 Identities=27% Similarity=0.303 Sum_probs=64.0
Q ss_pred CccCEEEcCCCCCC--cccHhhh-ccCCCCEEEccCCccc-cccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccc
Q 040192 125 ISLQHLDLSNTGIA--ELPKELN-ALVNLTCLNLEETWRL-TVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQL 200 (386)
Q Consensus 125 ~~L~~L~l~~~~i~--~l~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 200 (386)
.+|++|++++...- .=|..++ .+|+|+.|.+++-... +++.. ...++++|..||+++++++...+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 56777777664321 1122333 4677787777764332 22333 356778888888888877777777777777777
Q ss_pred c-ceeecCC-ccccccccccCCcEEEeeccCCc
Q 040192 201 C-GFRRSKS-LDVSALADLKRLNRLKIAECYGL 231 (386)
Q Consensus 201 ~-~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~ 231 (386)
. ..+.... .....+..+++|+.|+++..+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 6 3333322 33455666777888888765443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00018 Score=59.08 Aligned_cols=129 Identities=24% Similarity=0.271 Sum_probs=90.3
Q ss_pred CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh-cCCCccCEEEc
Q 040192 55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI-SKLISLQHLDL 132 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l 132 (386)
+=+++++.+.++..+... .-......++++.| .+..++. +.+++.|.+|.+..| ++..+.+.+ ..+++|+.|.+
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccccchhhccccccccceeccccc-chhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEe
Confidence 345666777766665444 44557777888888 6666655 778999999999888 888875445 45678999999
Q ss_pred CCCCCCccc--HhhhccCCCCEEEccCCccccc--cchhhhcCCCCCcEEEEeccCCcc
Q 040192 133 SNTGIAELP--KELNALVNLTCLNLEETWRLTV--IPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 133 ~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
.+|.+.++- ..+..|++|+.|.+-+|+.... .-..++..+++|+.|++.+-...+
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 999887553 3466788999998877743221 122346788899999988754333
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=1.2e-05 Score=61.74 Aligned_cols=108 Identities=27% Similarity=0.317 Sum_probs=88.5
Q ss_pred cccEEEEcCCCCCCCCc----ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCce
Q 040192 32 KEEHLVYAGAGLSETPD----VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNV 105 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~----~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 105 (386)
+..+++++...+..+++ +.+.. .++..++++|.+.++|.. .+++-+++|.+.+| .++++|.+ +..++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~-el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGY-ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCc-eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhh
Confidence 44556666666655543 33334 677789999999998877 78889999999999 99999999 789999999
Q ss_pred ecccCCccccccchhhcCCCccCEEEcCCCCCCcccHh
Q 040192 106 LNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKE 143 (386)
Q Consensus 106 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~ 143 (386)
|+++.| .+...|..+..+.++-+|+..++....+|..
T Consensus 105 lNl~~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFN-PLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccccC-ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 999999 8888888888899999999999988888755
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.00 E-value=0.00049 Score=59.18 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=40.6
Q ss_pred CCCCcEEecccCcCCCc-CC---hhhhcCCCcCceecccCCccccc-----------cchhhcCCCccCEEEcCCCCCC-
Q 040192 75 CPYLRTLFLNNNAPLRR-ID---SGFFQSMPRLNVLNLSGAIRLYS-----------FPLGISKLISLQHLDLSNTGIA- 138 (386)
Q Consensus 75 ~~~L~~L~l~~~~~~~~-~~---~~~~~~l~~L~~L~l~~~~~~~~-----------~~~~~~~l~~L~~L~l~~~~i~- 138 (386)
...+..+++++| .++. .. ...+..-.+|++.+++.- ..+. +.+++-+|++|+..++|.|.+.
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 556667777777 4442 11 122344556666665543 2221 1223445566666666666554
Q ss_pred cccH----hhhccCCCCEEEccCC
Q 040192 139 ELPK----ELNALVNLTCLNLEET 158 (386)
Q Consensus 139 ~l~~----~~~~l~~L~~L~l~~~ 158 (386)
..|+ .+.+-+.|.+|.+++|
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC
Confidence 3332 2344455555555555
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00012 Score=62.42 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=47.8
Q ss_pred cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc---ccccCCCCCcEEeecCCCccch
Q 040192 214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL---TFLIFAPNLKSIEVDSCYALEE 290 (386)
Q Consensus 214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~l~~l~~L~~L~l~~c~~~~~ 290 (386)
+..+++|+.|.++.|.......+..... .+|+|++|++++| +++++ ..+..+++|..|++.+|....
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--------~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~- 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAE--------KAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTN- 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhh--------hCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccc-
Confidence 3445667777777662222122222221 4577777777777 34443 334556677777777766333
Q ss_pred hhccCcccccCCCCcccccceeeeccc
Q 040192 291 IVSDVPEVMMGNLNPFAQFHFLCFSYL 317 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (386)
... +.. ..+.-+|+|++|+-.+.
T Consensus 131 l~d--yre--~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 131 LDD--YRE--KVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccc--HHH--HHHHHhhhhcccccccc
Confidence 111 000 24455667777665554
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.98 E-value=0.00023 Score=61.18 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCCCCCcEEecccCcCCCcCCh---hhhcCCCcCceecccCCccccccch-----h---------hcCCCccCEEEcCCC
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDS---GFFQSMPRLNVLNLSGAIRLYSFPL-----G---------ISKLISLQHLDLSNT 135 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~-----~---------~~~l~~L~~L~l~~~ 135 (386)
.+||+|+..+++.|......++ .+++.-..|..|.+++| .++.+.. + ..+-|.|+......|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 6777777777777743334443 23556677777777777 5553311 1 123366777777777
Q ss_pred CCCcccH-----hhhccCCCCEEEccCCcccccc-----chhhhcCCCCCcEEEEeccCCccc
Q 040192 136 GIAELPK-----ELNALVNLTCLNLEETWRLTVI-----PRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 136 ~i~~l~~-----~~~~l~~L~~L~l~~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
++...+. .+..-.+|..+.+..|. ++.- ...-+..+.+|+.|++++|.++-.
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 7654442 12223467777776662 2211 111134567777777777766544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=7.9e-05 Score=64.09 Aligned_cols=96 Identities=28% Similarity=0.315 Sum_probs=51.3
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc--hhhcCCCccCEEEc
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP--LGISKLISLQHLDL 132 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l 132 (386)
+++.|+.-||.+.++.-..+++.|+.|.++-| .++.+.+ +.+|++|++|+|..| .+..+- .-+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 45555555665555544455666666666665 5554444 456666666666655 555442 23355666666666
Q ss_pred CCCCCC-ccc-----HhhhccCCCCEEE
Q 040192 133 SNTGIA-ELP-----KELNALVNLTCLN 154 (386)
Q Consensus 133 ~~~~i~-~l~-----~~~~~l~~L~~L~ 154 (386)
..|.-. .-+ ..+.-+++|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 555432 111 2344555565554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00066 Score=58.09 Aligned_cols=82 Identities=28% Similarity=0.425 Sum_probs=39.4
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCc--CCCcCChhhhcCCCcCceecccCCcccccc--chhhcCCCccCEE
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNA--PLRRIDSGFFQSMPRLNVLNLSGAIRLYSF--PLGISKLISLQHL 130 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L 130 (386)
.++.+++.+..++.+.....+++|+.|.++.|+ ....+..- ...+++|+++++++| ++..+ ......+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchhhh
Confidence 555666666666555555556666666666552 11122222 233455555555555 44432 1123344444455
Q ss_pred EcCCCCCC
Q 040192 131 DLSNTGIA 138 (386)
Q Consensus 131 ~l~~~~i~ 138 (386)
++.+|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 55444433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=9.5e-05 Score=63.62 Aligned_cols=100 Identities=24% Similarity=0.262 Sum_probs=56.6
Q ss_pred CCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCccc--HhhhccCCCCE
Q 040192 75 CPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTC 152 (386)
Q Consensus 75 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~ 152 (386)
+.+.+.|++.+| .+.++.- ..+|+.|++|.|+-| .++.+. .+..|++|+.|.+..|.|.++. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 445556666666 5555533 556777777777666 565542 2456666666666666666543 23456666666
Q ss_pred EEccCCccccccch----hhhcCCCCCcEEE
Q 040192 153 LNLEETWRLTVIPR----RLISSFSSLHVLR 179 (386)
Q Consensus 153 L~l~~~~~~~~~~~----~~l~~l~~L~~L~ 179 (386)
|.|..|+-....+. .++..+++|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66655544333322 2345556666554
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00022 Score=58.59 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=34.7
Q ss_pred ccCcccEEEecCCCCCCcc--cccc-CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccc
Q 040192 250 VFHSLKKFQISYCKELKDL--TFLI-FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLK 321 (386)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~--~~l~-~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 321 (386)
.++.++.|.+.+|....+. ..++ ..++|+.|+|++|+.|++-.. ..+..+++|+.|.|.+.+.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------HHHHHhhhhHHHHhcCchhhh
Confidence 4555555666666555442 2222 235666666666666665544 255555666666665554443
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00027 Score=58.02 Aligned_cols=72 Identities=21% Similarity=0.363 Sum_probs=60.2
Q ss_pred ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc--cccccCCCCCcEEeecCCCcc
Q 040192 211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD--LTFLIFAPNLKSIEVDSCYAL 288 (386)
Q Consensus 211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~c~~~ 288 (386)
...+..++.++.|.+.+|+...+.....++. ..++|+.|+|++|+.+++ +.++..+++|+.|.|.+.+.+
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 3455667889999999999999888888775 689999999999999998 567889999999999986654
Q ss_pred ch
Q 040192 289 EE 290 (386)
Q Consensus 289 ~~ 290 (386)
..
T Consensus 190 ~~ 191 (221)
T KOG3864|consen 190 AN 191 (221)
T ss_pred hc
Confidence 43
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.26 E-value=0.016 Score=44.93 Aligned_cols=112 Identities=21% Similarity=0.397 Sum_probs=39.8
Q ss_pred CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEE
Q 040192 55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLD 131 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 131 (386)
+++.+.+.. .+..+... ..+++|+.+.+..+ +..++...|..++.++.+.+..+ +..+ ...+..+++|+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 455555553 33333333 45556666665542 44455555556655666665432 2222 23444555666666
Q ss_pred cCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCC
Q 040192 132 LSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSL 175 (386)
Q Consensus 132 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 175 (386)
+..+ +..++. .+..+ +|+.+.+..+ +..++..++.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 5443 333322 23333 5555555432 334444445555444
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.69 E-value=0.03 Score=43.43 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=4.6
Q ss_pred hcCCCcCceeccc
Q 040192 97 FQSMPRLNVLNLS 109 (386)
Q Consensus 97 ~~~l~~L~~L~l~ 109 (386)
|.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 4444444444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.64 E-value=0.014 Score=29.78 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=6.2
Q ss_pred cCEEEcCCCCCCccc
Q 040192 127 LQHLDLSNTGIAELP 141 (386)
Q Consensus 127 L~~L~l~~~~i~~l~ 141 (386)
|++|++++|.++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 344444444444333
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.74 E-value=0.045 Score=25.87 Aligned_cols=15 Identities=47% Similarity=0.709 Sum_probs=6.1
Q ss_pred ccCEEEcCCCCCCcc
Q 040192 126 SLQHLDLSNTGIAEL 140 (386)
Q Consensus 126 ~L~~L~l~~~~i~~l 140 (386)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555554444
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.92 E-value=0.049 Score=27.72 Aligned_cols=19 Identities=47% Similarity=0.653 Sum_probs=10.3
Q ss_pred CceecccCCccccccchhhc
Q 040192 103 LNVLNLSGAIRLYSFPLGIS 122 (386)
Q Consensus 103 L~~L~l~~~~~~~~~~~~~~ 122 (386)
|++|++++| .++.+|+.|+
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 555666665 5555554443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.54 E-value=0.21 Score=26.48 Aligned_cols=17 Identities=24% Similarity=0.679 Sum_probs=12.5
Q ss_pred CCCccEEeecCcccCcC
Q 040192 330 FPHLKEMKVIHCLKLKK 346 (386)
Q Consensus 330 ~~~L~~L~i~~c~~L~~ 346 (386)
+++|+.|+|++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777888888877665
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.55 E-value=0.65 Score=24.48 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=11.6
Q ss_pred CccCEEEcCCCCCCcccHh
Q 040192 125 ISLQHLDLSNTGIAELPKE 143 (386)
Q Consensus 125 ~~L~~L~l~~~~i~~l~~~ 143 (386)
++|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.55 E-value=0.65 Score=24.48 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=11.6
Q ss_pred CccCEEEcCCCCCCcccHh
Q 040192 125 ISLQHLDLSNTGIAELPKE 143 (386)
Q Consensus 125 ~~L~~L~l~~~~i~~l~~~ 143 (386)
++|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.70 E-value=0.046 Score=46.35 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=46.9
Q ss_pred ccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCcc
Q 040192 49 VRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISL 127 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 127 (386)
+..+. +++.|+++.|.+..+-.. ..+..|..|+++.+ .+...|.. ++....+..+++..| .....|..++..+++
T Consensus 38 i~~~k-r~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFK-RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHP 113 (326)
T ss_pred hhccc-eeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCc
Confidence 34444 566666666655543222 44455555566655 44545544 455555556666555 555556666666666
Q ss_pred CEEEcCCCCC
Q 040192 128 QHLDLSNTGI 137 (386)
Q Consensus 128 ~~L~l~~~~i 137 (386)
++++...+.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6666655554
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.67 E-value=0.07 Score=45.25 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCE
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTC 152 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 152 (386)
..+...+.|+++.| .+-..... ++-+..+..|+++.+ .+..+|..++....++++++..|..+..|...+..+.++.
T Consensus 39 ~~~kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 55666677777766 44444444 455666667777766 6666777777777777777777777777766777777777
Q ss_pred EEccCCccc
Q 040192 153 LNLEETWRL 161 (386)
Q Consensus 153 L~l~~~~~~ 161 (386)
++..++...
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777666443
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.48 E-value=3 Score=22.12 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=12.3
Q ss_pred ccCEEEcCCCCCCcccH
Q 040192 126 SLQHLDLSNTGIAELPK 142 (386)
Q Consensus 126 ~L~~L~l~~~~i~~l~~ 142 (386)
+|+.|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777764
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.34 E-value=1.9 Score=41.44 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=47.0
Q ss_pred ccCcccEEEecCCCCCCcccc---c-cCCCCCcEEeecCCC-ccchhhccCcccccCCCCcccccceeeecccccccccc
Q 040192 250 VFHSLKKFQISYCKELKDLTF---L-IFAPNLKSIEVDSCY-ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY 324 (386)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~---l-~~l~~L~~L~l~~c~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 324 (386)
..+.+..+++++| .+.++.. + ...|+|+.|+|+++. .+.+..+ ..--....|++|-+.|+|-.++..
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-------l~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-------LDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhh-------hhhhcCCCHHHeeecCCccccchh
Confidence 5778888888887 4555433 2 345888888888752 1222111 122334568888888876555443
Q ss_pred CC-------CcCCCCccEEe
Q 040192 325 RK-------PLPFPHLKEMK 337 (386)
Q Consensus 325 ~~-------~~~~~~L~~L~ 337 (386)
.. ...||+|..|+
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 31 22377777665
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.77 E-value=8.1 Score=20.51 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=8.4
Q ss_pred CccCEEEcCCCCCCc
Q 040192 125 ISLQHLDLSNTGIAE 139 (386)
Q Consensus 125 ~~L~~L~l~~~~i~~ 139 (386)
++|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.97 E-value=5.9 Score=20.19 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=3.7
Q ss_pred CCCEEEccCC
Q 040192 149 NLTCLNLEET 158 (386)
Q Consensus 149 ~L~~L~l~~~ 158 (386)
+|+.|++++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 4444444444
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.59 E-value=2.5 Score=40.77 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=51.6
Q ss_pred cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCC-CCccccccC--CCCCcEEeecCCCccchhh
Q 040192 216 DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKE-LKDLTFLIF--APNLKSIEVDSCYALEEIV 292 (386)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~l~~--l~~L~~L~l~~c~~~~~~~ 292 (386)
+.+.+..+.+++|+...--....+.. ..|+|..|+|++|.. +....++.. ...|++|.+.+++..+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 35677778888876654222222222 678999999998832 222233322 3458888888877655543
Q ss_pred ccCcccccCCCCcccccceeee
Q 040192 293 SDVPEVMMGNLNPFAQFHFLCF 314 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~l 314 (386)
....-.. .....||+|..||=
T Consensus 288 ~~s~yv~-~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 288 DRSEYVS-AIRELFPKLLRLDG 308 (585)
T ss_pred hhHHHHH-HHHHhcchheeecC
Confidence 3211110 23346888887763
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.61 E-value=15 Score=19.65 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=8.9
Q ss_pred CccCEEEcCCCCCC
Q 040192 125 ISLQHLDLSNTGIA 138 (386)
Q Consensus 125 ~~L~~L~l~~~~i~ 138 (386)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777766654
Done!